Query 042777
Match_columns 482
No_of_seqs 129 out of 134
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 16:21:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.6 0.044 1.5E-06 50.6 43.2 53 3-55 1-53 (284)
2 1c1g_A Tropomyosin; contractIl 97.4 0.079 2.7E-06 48.9 41.5 41 5-45 17-57 (284)
3 1i84_S Smooth muscle myosin he 97.1 0.0014 4.7E-08 76.6 10.5 50 2-51 858-907 (1184)
4 3ol1_A Vimentin; structural ge 94.2 1.5 5.2E-05 38.0 14.5 87 7-112 19-107 (119)
5 3swk_A Vimentin; cytoskeleton, 92.5 1.4 4.7E-05 36.3 10.8 84 9-109 1-84 (86)
6 3vkg_A Dynein heavy chain, cyt 90.3 20 0.00067 46.4 22.6 149 3-156 1936-2096(3245)
7 2v71_A Nuclear distribution pr 90.3 12 0.00041 35.1 22.0 74 178-253 107-181 (189)
8 3na7_A HP0958; flagellar bioge 89.3 16 0.00054 35.1 23.4 16 350-365 203-218 (256)
9 3na7_A HP0958; flagellar bioge 87.6 21 0.0007 34.3 20.9 9 202-210 170-178 (256)
10 2v66_B Nuclear distribution pr 81.7 25 0.00084 30.3 14.0 88 137-224 10-101 (111)
11 2dfs_A Myosin-5A; myosin-V, in 79.2 63 0.0022 37.5 18.3 65 90-157 979-1043(1080)
12 3vkg_A Dynein heavy chain, cyt 74.4 2.2E+02 0.0074 37.2 28.4 29 86-114 1918-1946(3245)
13 3u59_A Tropomyosin beta chain; 68.7 49 0.0017 27.4 11.1 67 4-70 19-85 (101)
14 2dfs_A Myosin-5A; myosin-V, in 68.7 1.8E+02 0.0061 33.8 20.5 92 189-295 959-1050(1080)
15 2v71_A Nuclear distribution pr 65.8 87 0.003 29.2 22.1 42 5-46 7-48 (189)
16 1ic2_A Tropomyosin alpha chain 62.9 54 0.0019 26.1 9.3 41 30-70 14-54 (81)
17 3u1c_A Tropomyosin alpha-1 cha 60.5 73 0.0025 26.5 11.1 64 4-67 19-82 (101)
18 2eqb_B RAB guanine nucleotide 52.9 1E+02 0.0035 25.9 11.3 27 2-28 6-32 (97)
19 3tnu_A Keratin, type I cytoske 51.6 1.2E+02 0.004 26.2 11.5 34 87-120 83-116 (131)
20 3nmd_A CGMP dependent protein 50.1 46 0.0016 26.5 6.6 39 188-226 28-66 (72)
21 3tnu_B Keratin, type II cytosk 49.8 1.2E+02 0.0042 25.9 12.4 34 87-120 81-114 (129)
22 2e7s_A RAB guanine nucleotide 49.6 1.1E+02 0.0037 27.2 9.6 118 54-227 12-130 (135)
23 2ocy_A RAB guanine nucleotide 48.7 1.5E+02 0.0053 26.7 16.8 28 201-228 116-143 (154)
24 3s4r_A Vimentin; alpha-helix, 47.1 41 0.0014 27.7 6.2 39 7-45 55-93 (93)
25 3qwe_A GMIP, GEM-interacting p 44.8 2.4E+02 0.0081 27.7 12.4 93 15-110 119-213 (279)
26 2efr_A General control protein 44.7 1.8E+02 0.0061 26.3 20.6 64 6-69 26-89 (155)
27 3oja_B Anopheles plasmodium-re 38.9 3.5E+02 0.012 28.0 17.3 44 263-306 532-575 (597)
28 3ol1_A Vimentin; structural ge 37.8 1.9E+02 0.0065 24.6 14.5 32 86-117 53-84 (119)
29 1txp_A HnRNP C, heterogeneous 37.2 27 0.00091 23.0 2.7 21 97-117 1-21 (28)
30 2fxo_A Myosin heavy chain, car 33.6 2.3E+02 0.0078 24.3 17.4 74 2-75 14-87 (129)
31 3swk_A Vimentin; cytoskeleton, 32.6 2E+02 0.0067 23.2 10.6 33 86-118 33-65 (86)
32 3u59_A Tropomyosin beta chain; 31.9 2.1E+02 0.0073 23.4 14.7 57 98-154 5-61 (101)
33 2ocy_A RAB guanine nucleotide 31.0 3E+02 0.01 24.8 13.3 67 7-73 57-124 (154)
34 3hnw_A Uncharacterized protein 29.8 1.7E+02 0.0058 25.7 7.7 50 2-51 83-132 (138)
35 2w83_C C-JUN-amino-terminal ki 26.4 2.5E+02 0.0087 22.5 7.5 45 95-163 19-63 (77)
36 2efr_A General control protein 26.0 3.6E+02 0.012 24.2 16.5 82 16-107 57-138 (155)
37 3tnu_B Keratin, type II cytosk 25.2 3.2E+02 0.011 23.3 12.4 16 96-111 30-45 (129)
38 4e61_A Protein BIM1; EB1-like 24.2 1.6E+02 0.0054 25.1 6.1 38 262-299 5-42 (106)
39 3r4h_A Coiled coil helix CC-TE 24.2 78 0.0027 21.1 3.3 18 96-113 3-20 (34)
40 3oja_B Anopheles plasmodium-re 23.7 6.2E+02 0.021 26.1 15.1 33 86-118 514-546 (597)
41 3bas_A Myosin heavy chain, str 21.5 3.2E+02 0.011 21.9 9.3 48 181-228 12-63 (89)
42 2f1m_A Acriflavine resistance 21.3 3.3E+02 0.011 25.3 8.6 32 78-111 97-128 (277)
43 1zxa_A CGMP-dependent protein 20.8 1.5E+02 0.0051 23.2 4.9 40 189-228 14-53 (67)
44 1ic2_A Tropomyosin alpha chain 20.5 3.1E+02 0.011 21.5 9.9 18 104-121 8-25 (81)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.60 E-value=0.044 Score=50.59 Aligned_cols=53 Identities=13% Similarity=0.077 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 042777 3 VEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKY 55 (482)
Q Consensus 3 l~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A 55 (482)
+|.+++.|..++.++.........+..+|...+..+..+...+......-...
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 53 (284)
T 1c1g_A 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKAT 53 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777766666666666666666666666655554433333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.40 E-value=0.079 Score=48.86 Aligned_cols=41 Identities=20% Similarity=0.094 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 5 GLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLL 45 (482)
Q Consensus 5 ~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kL 45 (482)
.+...+..+...+......-..+...+..++..+..+...+
T Consensus 17 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (284)
T 1c1g_A 17 NALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDEL 57 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.10 E-value=0.0014 Score=76.61 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=28.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 042777 2 DVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDE 51 (482)
Q Consensus 2 el~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~ 51 (482)
++..+++++..++..+...+.....+...+.....-+.++...|......
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~ 907 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777766666666655555555555555555555555444433
No 4
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.22 E-value=1.5 Score=37.99 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHH--HHHHHHHHH
Q 042777 7 LKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKE--MADQLAETA 84 (482)
Q Consensus 7 qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~--~~k~~Le~~ 84 (482)
...|..++.|+..+-..|+++..++++++..+++++.+.+.-..-+..+.-+....+ ..+.+ ..+..|+.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lr-------K~lD~~~l~r~dLE~- 90 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFR-------QDVDNASLARLDLER- 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-------hcccHHHHHHHHHHH-
Confidence 567999999999999999999999999999999999999875544333332222222 12222 34555665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 85 RLREQLLHVLNELKAAQEELLSMETELA 112 (482)
Q Consensus 85 ~areqya~~~~EL~svKqEL~klr~E~~ 112 (482)
.+.+.++||.=+++-|.
T Consensus 91 -----------~iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 91 -----------KVESLQEEIAFLKKLHE 107 (119)
T ss_dssp -----------HHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHH
Confidence 67888888888887765
No 5
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=92.51 E-value=1.4 Score=36.26 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHH
Q 042777 9 DLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAETARLRE 88 (482)
Q Consensus 9 El~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~~~k~~Le~~~are 88 (482)
+|..++.|+..+-..|+++..++++++-.+++++.+.+.-..-+..+.-+.-..+.-+..+ -+++..|+.
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a-----~l~r~dLE~----- 70 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA-----SLARLDLER----- 70 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH-----HHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-----HHHHHHHHH-----
Confidence 3567899999999999999999999999999999999865544444433332222111110 146777775
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042777 89 QLLHVLNELKAAQEELLSMET 109 (482)
Q Consensus 89 qya~~~~EL~svKqEL~klr~ 109 (482)
.+++.++||.=+++
T Consensus 71 -------kvesL~eEl~fLkk 84 (86)
T 3swk_A 71 -------KVESLQEEIAFLKK 84 (86)
T ss_dssp -------HHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHHhh
Confidence 67778888776653
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.28 E-value=20 Score=46.42 Aligned_cols=149 Identities=13% Similarity=0.076 Sum_probs=88.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHH-------
Q 042777 3 VEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKE------- 75 (482)
Q Consensus 3 l~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~------- 75 (482)
++.+|++|...+.+++.+...-.+.+.++..-+..+++-+...+. .+..+....+.+..+..+.+...++
T Consensus 1936 V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~---~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pk 2012 (3245)
T 3vkg_A 1936 VKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARE---LQVQLDVRNKEIAVQKVKAYADLEKAEPTGPL 2012 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCC-------CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChH
Confidence 466777777777777766666666666666555555443322111 1111111111112222222222221
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHH
Q 042777 76 -----MADQLAETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELN 150 (482)
Q Consensus 76 -----~~k~~Le~~~areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lk 150 (482)
.+..+|.. +..+...+-..|..+.+.|..++.+|+.+..+|..-..+++.+.....-..+-+..|..|-.+=.
T Consensus 2013 r~~l~~ae~~l~~--~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~ 2090 (3245)
T 3vkg_A 2013 REEVEQLENAANE--LKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWE 2090 (3245)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHH
Confidence 12233333 66667777777778888888888889888888888888888888877777777777777777666
Q ss_pred HHHHHh
Q 042777 151 EALFKA 156 (482)
Q Consensus 151 Esl~~~ 156 (482)
+++...
T Consensus 2091 ~~~~~l 2096 (3245)
T 3vkg_A 2091 QQSENF 2096 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.25 E-value=12 Score=35.08 Aligned_cols=74 Identities=23% Similarity=0.307 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhcccchhHHHHHHHHHHHHHHHHH
Q 042777 178 LEVAKAKAAKAEEQFEDLKRQL-EMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDKSDVIKELKQVKEEMEVKE 253 (482)
Q Consensus 178 ~~~~~~~l~qae~el~~Lk~e~-e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s~k~~~~~EL~e~k~~le~k~ 253 (482)
...|-..|++....|+.-.+-. ++..|++++|......+..|..||.. ++.....+.- ++-|+.+++..|.+++
T Consensus 107 l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E-Ke~l~~~~QR-LkdE~rDLk~El~v~~ 181 (189)
T 2v71_A 107 LHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE-KESLLVSVQR-LKDEARDLRQELAVRE 181 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCC-------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 4456678888888888777775 89999999999999999999999985 4433222221 4446666666665444
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=89.34 E-value=16 Score=35.13 Aligned_cols=16 Identities=19% Similarity=0.538 Sum_probs=13.1
Q ss_pred CCceeecHHHHHHHHh
Q 042777 350 GAFVVISAEEYDLLVK 365 (482)
Q Consensus 350 ~~~ITiS~eEYe~Ls~ 365 (482)
|-+++||...|..+.+
T Consensus 203 GC~~~lppq~~~~i~~ 218 (256)
T 3na7_A 203 GCFIRLNDKIYTEVLT 218 (256)
T ss_dssp TTCCBCCHHHHHHHHH
T ss_pred CCCeeeCHHHHHHHHC
Confidence 3469999999998874
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.56 E-value=21 Score=34.31 Aligned_cols=9 Identities=11% Similarity=0.361 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 042777 202 IQELEIELL 210 (482)
Q Consensus 202 ~k~LE~KL~ 210 (482)
...+...|.
T Consensus 170 ~~~i~~~lL 178 (256)
T 3na7_A 170 VEKTEPKIY 178 (256)
T ss_dssp HHTSCHHHH
T ss_pred HhcCCHHHH
Confidence 333333333
No 10
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=81.71 E-value=25 Score=30.31 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=60.6
Q ss_pred hhHhHHHHHHHHHHHHHHHhHHHH---HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 042777 137 DKSDMLSRHVSELNEALFKAELVA---IEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQL-EMIQELEIELLEK 212 (482)
Q Consensus 137 ~kveeLs~Ei~~lkEsl~~~~~A~---~eAeee~~~i~~e~~~~~~~~~~~l~qae~el~~Lk~e~-e~~k~LE~KL~et 212 (482)
.++.-|..|+...+.-+..++..| +-..+..+.-+.........|-..|+|....|+.-.+-. ++..|||+||..+
T Consensus 10 ~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~a 89 (111)
T 2v66_B 10 ADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQA 89 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445556666666666555554322 222222233333344455677788999999998877775 8999999999999
Q ss_pred HHHHHHHHHHHH
Q 042777 213 SIVSDLLRLELE 224 (482)
Q Consensus 213 s~~i~~Lq~EL~ 224 (482)
......|..||.
T Consensus 90 iErnalLE~El~ 101 (111)
T 2v66_B 90 IERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999998
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=79.19 E-value=63 Score=37.52 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhH
Q 042777 90 LLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAE 157 (482)
Q Consensus 90 ya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~ 157 (482)
....-..+....+|+..++.++..+..++............ .-.++|..|..+...|...+....
T Consensus 979 ~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 979 AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566777777777777777777777766555555543 333778888888888877666655
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.39 E-value=2.2e+02 Score=37.22 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 86 LREQLLHVLNELKAAQEELLSMETELAAA 114 (482)
Q Consensus 86 areqya~~~~EL~svKqEL~klr~E~~s~ 114 (482)
.+.+|..-+.-|..+......++.++...
T Consensus 1918 ~~~rl~~GL~KL~et~~~V~~l~~~L~~~ 1946 (3245)
T 3vkg_A 1918 EQLHLNIGLKKLRDTEAQVKDLQVSLAQK 1946 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777777776554
No 13
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=68.74 E-value=49 Score=27.40 Aligned_cols=67 Identities=12% Similarity=0.031 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHh
Q 042777 4 EGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLE 70 (482)
Q Consensus 4 ~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE 70 (482)
|........|..++..++....++..++...++-+.-|...++.++..-..+....+.+...+...|
T Consensus 19 e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE 85 (101)
T 3u59_A 19 ENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555666666666665555555555555554445444444444444333
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=68.73 E-value=1.8e+02 Score=33.83 Aligned_cols=92 Identities=18% Similarity=0.133 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhcccchhHHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHH
Q 042777 189 EEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDKSDVIKELKQVKEEMEVKERRNLVQAFRIESMET 268 (482)
Q Consensus 189 e~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s~k~~~~~EL~e~k~~le~k~e~~~~~~~sv~sL~~ 268 (482)
..++..|+.+++..+.++.++..+...+..|+.++....+ ++..+..+.+..++.. .- .-++|..
T Consensus 959 ~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~------------~~~~~~ke~~~lee~~--~~-~~~~L~~ 1023 (1080)
T 2dfs_A 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRK------------ELHQTQTEKKTIEEWA--DK-YKHETEQ 1023 (1080)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH--HH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH--HH-HHHHHHH
Confidence 3445555555544444555555555555555555554222 2222222221111110 00 1135555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 269 ELHQLKLEVKNANEEMDSLKSNAEMLT 295 (482)
Q Consensus 269 EL~~~~~Ele~ar~~~~~l~~~l~~l~ 295 (482)
.++.+++|...+++++.++...+....
T Consensus 1024 kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 1024 LVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666664444433
No 15
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=65.85 E-value=87 Score=29.22 Aligned_cols=42 Identities=21% Similarity=0.117 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 5 GLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLK 46 (482)
Q Consensus 5 ~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe 46 (482)
.+..++.-||......-..-.++-.||..-+-.-.+|..-|+
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE 48 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELE 48 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777777777777666666
No 16
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=62.86 E-value=54 Score=26.06 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHh
Q 042777 30 KLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLE 70 (482)
Q Consensus 30 ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE 70 (482)
+++.|.--++.+..+|+.+......+..+....+.++..+|
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE 54 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTE 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444443
No 17
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=60.54 E-value=73 Score=26.49 Aligned_cols=64 Identities=16% Similarity=0.017 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHH
Q 042777 4 EGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCID 67 (482)
Q Consensus 4 ~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~ 67 (482)
|........|..++..++....++..|+...++-+.-|...|+.++..-..+....+.......
T Consensus 19 e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 19 ENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555555555555555444444444444443333
No 18
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.88 E-value=1e+02 Score=25.87 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=14.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 2 DVEGLLKDLANCKLQLEAKDSAQKQAL 28 (482)
Q Consensus 2 el~~~qkEl~k~K~qle~aE~~K~qal 28 (482)
+++.++.+|..+..++...+....+..
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~ 32 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLR 32 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 355555555555555555554444444
No 19
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.58 E-value=1.2e+02 Score=26.17 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 87 REQLLHVLNELKAAQEELLSMETELAAARGLQLK 120 (482)
Q Consensus 87 reqya~~~~EL~svKqEL~klr~E~~s~~e~k~~ 120 (482)
+..-...=.+|..++.++...-++|..+++-|..
T Consensus 83 q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~ 116 (131)
T 3tnu_A 83 QEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTR 116 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444457778888888999999999988854
No 20
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=50.10 E-value=46 Score=26.53 Aligned_cols=39 Identities=33% Similarity=0.537 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 042777 188 AEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQS 226 (482)
Q Consensus 188 ae~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~~~ 226 (482)
.+++.+.|+..-+.+++|+..|.+...+|..||.+|-.+
T Consensus 28 L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 28 LQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777889999999999999999999999765
No 21
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.82 E-value=1.2e+02 Score=25.92 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 87 REQLLHVLNELKAAQEELLSMETELAAARGLQLK 120 (482)
Q Consensus 87 reqya~~~~EL~svKqEL~klr~E~~s~~e~k~~ 120 (482)
+..-...=.+|..++.++...-++|..+++-|..
T Consensus 81 q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~ 114 (129)
T 3tnu_B 81 RNKLAELEEALQKAKQDMARLLREYQELMNTKLA 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444456778889999999999999988854
No 22
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.58 E-value=1.1e+02 Score=27.18 Aligned_cols=118 Identities=19% Similarity=0.266 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042777 54 KYVEECTEARTCIDVLESKLKEMADQLAETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAG 133 (482)
Q Consensus 54 ~A~qd~E~ak~r~~elE~~~~~~~k~~Le~~~areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~ 133 (482)
.+.......+.++++++. .+.+|.....+|..+..|+.++..++..-...| ..|...-.
T Consensus 12 ~~r~~l~~~~~~~~~le~--------------l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R-------~~aE~~~~ 70 (135)
T 2e7s_A 12 KSLKTIASQKAAIENYNQ--------------LKEDYNTLKRELSDRDDEVKRLREDIAKENELR-------TKAEEEAD 70 (135)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHH-------HHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q ss_pred hhhhhHhHHHHHH-HHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042777 134 MEKDKSDMLSRHV-SELNEALFKAELVAIEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEK 212 (482)
Q Consensus 134 ~~~~kveeLs~Ei-~~lkEsl~~~~~A~~eAeee~~~i~~e~~~~~~~~~~~l~qae~el~~Lk~e~e~~k~LE~KL~et 212 (482)
....-+++||.-+ ...|.=+-.++..+...+ .....|+..|.++
T Consensus 71 ~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e-----------------------------------~r~~~L~~ql~e~ 115 (135)
T 2e7s_A 71 KLNKEVEDLTASLFDEANNLVADARMEKYAIE-----------------------------------ILNKRLTEQLREK 115 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-----------------------------------HHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhH
Q 042777 213 SIVSDLLRLELEQSI 227 (482)
Q Consensus 213 s~~i~~Lq~EL~~~k 227 (482)
...|+.||.+|...+
T Consensus 116 e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 116 DMLLDTLTLQLKNLK 130 (135)
T ss_dssp HHCC-----------
T ss_pred HHHHHHHHHHHHHHH
No 23
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.65 E-value=1.5e+02 Score=26.70 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q 042777 201 MIQELEIELLEKSIVSDLLRLELEQSIE 228 (482)
Q Consensus 201 ~~k~LE~KL~ets~~i~~Lq~EL~~~ke 228 (482)
....|+..|.++...|+.||.+|...+-
T Consensus 116 r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 116 LNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888899999999886644
No 24
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=47.12 E-value=41 Score=27.72 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 7 LKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLL 45 (482)
Q Consensus 7 qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kL 45 (482)
..+|..++.++..+-..|+++..|+++....+++++.+|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456777777888888888888888888777777777665
No 25
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=44.83 E-value=2.4e+02 Score=27.74 Aligned_cols=93 Identities=15% Similarity=0.044 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHH--HHHHHHHHHHHHHHHHHH
Q 042777 15 LQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLK--EMADQLAETARLREQLLH 92 (482)
Q Consensus 15 ~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~--~~~k~~Le~~~areqya~ 92 (482)
++...++..=..+..-|.+||..-.-+-..++++...-..+... -..+...+.++.... +.+.+..+. |...|..
T Consensus 119 e~w~r~eKk~~dae~~l~KAK~~Y~~r~ee~ekak~~~~~~e~~-q~~~~~~K~lek~r~~EEea~~K~ee--Ad~~Y~~ 195 (279)
T 3qwe_A 119 EQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAP-QASPGPSKQQERRRRSREEAQAKAQE--AEALYQA 195 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC--------------HHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc-cccccccchhhHHHhhHHHHHHHHHH--HHHHHHH
Confidence 33334444444445555555555555555555544322111100 001112233433332 135555555 8899999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042777 93 VLNELKAAQEELLSMETE 110 (482)
Q Consensus 93 ~~~EL~svKqEL~klr~E 110 (482)
-|.++...+++|...|-.
T Consensus 196 ~V~~a~~~r~eL~~tk~~ 213 (279)
T 3qwe_A 196 CVREANARQQDLEIAKQR 213 (279)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHH
Confidence 999999999999776544
No 26
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=44.67 E-value=1.8e+02 Score=26.26 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHH
Q 042777 6 LLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVL 69 (482)
Q Consensus 6 ~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~el 69 (482)
+..||.+.-++++.+++--.....+|..+-+.+..|...=+.++...............++++.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEA 89 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 89 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777766666666666655555555554444444444444444444444443
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.87 E-value=3.5e+02 Score=28.05 Aligned_cols=44 Identities=11% Similarity=0.192 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 263 IESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEMD 306 (482)
Q Consensus 263 v~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~e~Ak~~~~ 306 (482)
+.....++..++.+....+...+..+..+..+++|....+..+.
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666666666666666655555
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=37.75 E-value=1.9e+02 Score=24.59 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 86 LREQLLHVLNELKAAQEELLSMETELAAARGL 117 (482)
Q Consensus 86 areqya~~~~EL~svKqEL~klr~E~~s~~e~ 117 (482)
-|.+|..-+.--.++..++..+|++++.+.-.
T Consensus 53 fk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~ 84 (119)
T 3ol1_A 53 LREKLQEEMLQREEAENTLQSFRQDVDNASLA 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhhcccHHHHH
Confidence 34455555555555556666666666544333
No 29
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=37.16 E-value=27 Score=22.96 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042777 97 LKAAQEELLSMETELAAARGL 117 (482)
Q Consensus 97 L~svKqEL~klr~E~~s~~e~ 117 (482)
|.+.|.||..+++..|++++.
T Consensus 1 lQ~IkkELtQIK~kvDsLLe~ 21 (28)
T 1txp_A 1 IQAIKKELTQIKQKVDSLLEN 21 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999874
No 30
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=33.63 E-value=2.3e+02 Score=24.28 Aligned_cols=74 Identities=19% Similarity=0.259 Sum_probs=47.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHH
Q 042777 2 DVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKE 75 (482)
Q Consensus 2 el~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~ 75 (482)
|+.+...++.+++..+...+..+...-......-.-..+|..+|..-...-.-+..-++....+-.+|+..+.+
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~e 87 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKE 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888888777666666666666677777655444444444444444444555555443
No 31
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=32.56 E-value=2e+02 Score=23.23 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 86 LREQLLHVLNELKAAQEELLSMETELAAARGLQ 118 (482)
Q Consensus 86 areqya~~~~EL~svKqEL~klr~E~~s~~e~k 118 (482)
-|..|..-+.--.++-.++..+|++++.+--.|
T Consensus 33 fk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r 65 (86)
T 3swk_A 33 LREKLQEEMLQREEAENTLQSFRQDVDNASLAR 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 355566666666666677777777776655444
No 32
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=31.90 E-value=2.1e+02 Score=23.43 Aligned_cols=57 Identities=9% Similarity=0.101 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHH
Q 042777 98 KAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALF 154 (482)
Q Consensus 98 ~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~ 154 (482)
+++|.=+..++.+.+.+.+--..+..+...+..........|..|.+.|..+...+.
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld 61 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVE 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544444444444444444444444444444444444333
No 33
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.99 E-value=3e+02 Score=24.82 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHhhhHHHHHHHHhhHHHHhHHH
Q 042777 7 LKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLL-KQSEDERGKYVEECTEARTCIDVLESKL 73 (482)
Q Consensus 7 qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kL-e~a~~~~~~A~qd~E~ak~r~~elE~~~ 73 (482)
..++.++...+......|..|..++.....-+++|+..| +.||.=...|+.....++.|...|+..+
T Consensus 57 ~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql 124 (154)
T 2ocy_A 57 DDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL 124 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555555555566666653 5666555566666666666666665543
No 34
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=29.80 E-value=1.7e+02 Score=25.71 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 042777 2 DVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDE 51 (482)
Q Consensus 2 el~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~ 51 (482)
+|+...+++..||..+..+...--.+..+++..++-+.+|..++-+.+.+
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 35
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=26.36 E-value=2.5e+02 Score=22.53 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHH
Q 042777 95 NELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEA 163 (482)
Q Consensus 95 ~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eA 163 (482)
.+|..+|.-|.-++.|+ -.+|++||.|-..+++++.++..+...-
T Consensus 19 ~eLl~TKNaLnvvk~DL------------------------I~rvdELt~E~e~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 19 TQLLETKNALNIVKNDL------------------------IAKVDELTCEKDVLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777666 3469999999999999999888665443
No 36
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=26.00 E-value=3.6e+02 Score=24.21 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 16 QLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAETARLREQLLHVLN 95 (482)
Q Consensus 16 qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~~~k~~Le~~~areqya~~~~ 95 (482)
.+..-+..=.++-.--+.....|..|+.+|+.+..-...|... +..||..+.+ ..-.|.. .+..|..+..
T Consensus 57 nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERs-------v~kLEk~id~-lEd~L~~--~Kek~~~i~~ 126 (155)
T 2efr_A 57 NLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERS-------VTKLEKSIDD-LEDELYA--QKLKYKAISE 126 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-HHHHHHH--HHHHHHHHHH
T ss_pred hhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-HHHHHHH--HHHHHHHHHH
Confidence 3333333334444444555566666666666655443333332 2333332221 1112333 5556666666
Q ss_pred HHHHHHHHHHHH
Q 042777 96 ELKAAQEELLSM 107 (482)
Q Consensus 96 EL~svKqEL~kl 107 (482)
+|+.+=.+|..+
T Consensus 127 eLd~tl~el~~~ 138 (155)
T 2efr_A 127 EMKQLEDKVEEL 138 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 666666666554
No 37
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.18 E-value=3.2e+02 Score=23.26 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 042777 96 ELKAAQEELLSMETEL 111 (482)
Q Consensus 96 EL~svKqEL~klr~E~ 111 (482)
+|..+|.|+..++..+
T Consensus 30 ~l~~~k~Ei~elrr~i 45 (129)
T 3tnu_B 30 DLRNTKHEISEMNRMI 45 (129)
T ss_dssp ----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666655443
No 38
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.25 E-value=1.6e+02 Score=25.10 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 262 RIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQ 299 (482)
Q Consensus 262 sv~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~e 299 (482)
|+.++..||...+.++.....++..++..++.+..|.+
T Consensus 5 s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 5 SLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888777777777777766655544
No 39
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=24.22 E-value=78 Score=21.09 Aligned_cols=18 Identities=50% Similarity=0.661 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042777 96 ELKAAQEELLSMETELAA 113 (482)
Q Consensus 96 EL~svKqEL~klr~E~~s 113 (482)
||-+.||||..+++++++
T Consensus 3 elaaikqelaaikkelaa 20 (34)
T 3r4h_A 3 ELAAIKQELAAIKKELAA 20 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 556666666666666644
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.67 E-value=6.2e+02 Score=26.12 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 86 LREQLLHVLNELKAAQEELLSMETELAAARGLQ 118 (482)
Q Consensus 86 areqya~~~~EL~svKqEL~klr~E~~s~~e~k 118 (482)
.+.+++....++...++.....+.+|..+-.++
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (597)
T 3oja_B 514 LKERQAFKLRETQARRTEADAKQKETEDLEQEN 546 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhh
Confidence 444555555555555555555555554433333
No 41
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=21.47 E-value=3.2e+02 Score=21.95 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q 042777 181 AKAKAAKAEEQFEDLKRQL----EMIQELEIELLEKSIVSDLLRLELEQSIE 228 (482)
Q Consensus 181 ~~~~l~qae~el~~Lk~e~----e~~k~LE~KL~ets~~i~~Lq~EL~~~ke 228 (482)
+..++...+.++..|+..+ ...++|+.+......+...|+.++..+-+
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe 63 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLED 63 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4456666777777777776 45667777777777777777777554444
No 42
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=21.34 E-value=3.3e+02 Score=25.26 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 78 DQLAETARLREQLLHVLNELKAAQEELLSMETEL 111 (482)
Q Consensus 78 k~~Le~~~areqya~~~~EL~svKqEL~klr~E~ 111 (482)
+.+++. ++.+|..+-+.|.+++.+|..++..+
T Consensus 97 ~~~~~~--a~~~~~~a~a~l~~a~a~l~~a~~~l 128 (277)
T 2f1m_A 97 KQEYDQ--ALADAQQANAAVTAAKAAVETARINL 128 (277)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444 55556666666666666665554443
No 43
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.79 E-value=1.5e+02 Score=23.22 Aligned_cols=40 Identities=30% Similarity=0.214 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q 042777 189 EEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSIE 228 (482)
Q Consensus 189 e~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~~~ke 228 (482)
+.-+..++..-+.+.+||..|.....+|..|+.+|..+..
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777789999999999999999999999987644
No 44
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=20.46 E-value=3.1e+02 Score=21.48 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042777 104 LLSMETELAAARGLQLKA 121 (482)
Q Consensus 104 L~klr~E~~s~~e~k~~A 121 (482)
+..++.+++.+.+.-..+
T Consensus 8 m~~lk~e~d~a~~~~~~~ 25 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQA 25 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344443333333333
Done!