Query 042777
Match_columns 482
No_of_seqs 129 out of 134
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 16:21:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042777.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042777hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 23.0 1.5E+02 0.011 22.4 8.1 30 263-292 74-103 (107)
2 d1pcfa_ d.18.1.1 (A:) Transcri 8.1 1.6E+02 0.011 21.0 3.5 23 351-373 40-62 (66)
3 d1fxka_ a.2.5.1 (A:) Prefoldin 6.9 4.5E+02 0.032 19.4 6.7 40 4-43 4-43 (107)
4 d2odka1 d.306.1.1 (A:1-51) Hyp 6.1 1.3E+02 0.0091 20.3 2.0 16 350-365 34-49 (51)
5 d1vcsa1 a.47.2.1 (A:8-96) Vesi 6.1 4.8E+02 0.035 19.0 7.5 25 200-224 31-55 (89)
6 d2azeb1 e.63.1.2 (B:201-301) T 5.8 5.3E+02 0.038 19.3 6.0 38 263-300 3-40 (101)
7 d2a6qa1 d.306.1.1 (A:10-92) An 5.4 1.2E+02 0.0088 22.3 1.7 20 350-369 35-54 (83)
8 d1gcva_ a.1.1.2 (A:) Hemoglobi 5.4 62 0.0045 25.7 -0.1 15 464-478 91-105 (140)
9 d2nrha1 c.55.1.13 (A:1-82) Typ 4.5 94 0.0068 23.4 0.4 21 455-475 52-72 (82)
10 d1io1a_ e.32.1.1 (A:) Phase 1 4.5 8.6E+02 0.063 19.9 8.9 39 119-157 6-44 (395)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.01 E-value=1.5e+02 Score=22.42 Aligned_cols=30 Identities=7% Similarity=0.275 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 263 IESMETELHQLKLEVKNANEEMDSLKSNAE 292 (482)
Q Consensus 263 v~sL~~EL~~~~~Ele~ar~~~~~l~~~l~ 292 (482)
++.|..+|..+..-++..+.++.++...++
T Consensus 74 ~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~ 103 (107)
T d1fxka_ 74 LETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554443
No 2
>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.08 E-value=1.6e+02 Score=21.04 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=20.0
Q ss_pred CceeecHHHHHHHHhHHHHHHHh
Q 042777 351 AFVVISAEEYDLLVKKAVKADEV 373 (482)
Q Consensus 351 ~~ITiS~eEYe~Ls~ka~eaEe~ 373 (482)
.+|+||.+.|..|.....+.++.
T Consensus 40 KGIsL~~~qw~~l~~~~~~i~~a 62 (66)
T d1pcfa_ 40 KGISLNPEQWSQLKEQISDIDDA 62 (66)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHH
T ss_pred CeEEECHHHHHHHHHHHHHHHHH
Confidence 68999999999999988886654
No 3
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=6.92 E-value=4.5e+02 Score=19.37 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 4 EGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELST 43 (482)
Q Consensus 4 ~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~ 43 (482)
...-..+..+..++......+.+...++..+..++++|..
T Consensus 4 qe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~ 43 (107)
T d1fxka_ 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSR 43 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445566777788888889999999999999999999874
No 4
>d2odka1 d.306.1.1 (A:1-51) Hypothetical protein NE2111 {Nitrosomonas europaea [TaxId: 915]}
Probab=6.11 E-value=1.3e+02 Score=20.31 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=13.3
Q ss_pred CCceeecHHHHHHHHh
Q 042777 350 GAFVVISAEEYDLLVK 365 (482)
Q Consensus 350 ~~~ITiS~eEYe~Ls~ 365 (482)
+.-|-||.++|+.|..
T Consensus 34 p~avlis~e~y~~L~~ 49 (51)
T d2odka1 34 EEAVLVPIGEWRRLQA 49 (51)
T ss_dssp EEEEEEEHHHHHHHHH
T ss_pred eeEEEeeHHHHHHHhc
Confidence 3568899999999975
No 5
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.09 E-value=4.8e+02 Score=18.96 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 042777 200 EMIQELEIELLEKSIVSDLLRLELE 224 (482)
Q Consensus 200 e~~k~LE~KL~ets~~i~~Lq~EL~ 224 (482)
...++++..|+++...|..+.-|..
T Consensus 31 ~~l~~ie~~leEA~ell~qMelEvr 55 (89)
T d1vcsa1 31 QMVANVEKQLEEARELLEQMDLEVR 55 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544444
No 6
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.76 E-value=5.3e+02 Score=19.32 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 263 IESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQR 300 (482)
Q Consensus 263 v~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~e~ 300 (482)
+..|+.||..+..+-....+....+...+..++...+.
T Consensus 3 ~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lted~~n 40 (101)
T d2azeb1 3 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDS 40 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Confidence 34677777777777666666666666666666654443
No 7
>d2a6qa1 d.306.1.1 (A:10-92) Antitoxin YefM {Escherichia coli [TaxId: 562]}
Probab=5.43 E-value=1.2e+02 Score=22.29 Aligned_cols=20 Identities=40% Similarity=0.454 Sum_probs=15.4
Q ss_pred CCceeecHHHHHHHHhHHHH
Q 042777 350 GAFVVISAEEYDLLVKKAVK 369 (482)
Q Consensus 350 ~~~ITiS~eEYe~Ls~ka~e 369 (482)
+.-|-||.++|++|-.-.+-
T Consensus 35 ~~~VliS~~d~~sl~ETl~l 54 (83)
T d2a6qa1 35 EACVLMSLEEYNSLEETAYL 54 (83)
T ss_dssp CEEEEEEHHHHHHHHHHHHH
T ss_pred CCeEEeCHHHHHHHHHHHHH
Confidence 35799999999998665543
No 8
>d1gcva_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}
Probab=5.42 E-value=62 Score=25.73 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=11.0
Q ss_pred ccCCCcccccchhhc
Q 042777 464 YEKIPATYQPLGKVL 478 (482)
Q Consensus 464 ~~~~~~~~~~~~~~~ 478 (482)
|+=.|..|+++|.+|
T Consensus 91 ~gV~p~~F~~~~~~l 105 (140)
T d1gcva_ 91 LLVDPQNFPMLSECI 105 (140)
T ss_dssp TCCCGGGHHHHHHHH
T ss_pred cCCChHHHHHHHHHH
Confidence 566677888888765
No 9
>d2nrha1 c.55.1.13 (A:1-82) Type III pantothenate kinase, CoaX {Campylobacter jejuni [TaxId: 197]}
Probab=4.54 E-value=94 Score=23.40 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=17.6
Q ss_pred CCCCCCcccccCCCcccccch
Q 042777 455 EPKPMNFPTYEKIPATYQPLG 475 (482)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~ 475 (482)
.|.-+|...|-+.++.||-||
T Consensus 52 ~~~~inL~~~~~~~T~Y~GLG 72 (82)
T d2nrha1 52 QKNFINLEPYFLFDTIYQGLG 72 (82)
T ss_dssp CSSCEECGGGCCCCCSCBTCC
T ss_pred CcceEehhHeEEeeeeeeccC
Confidence 345678888999999999999
No 10
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=4.45 E-value=8.6e+02 Score=19.94 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhH
Q 042777 119 LKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAE 157 (482)
Q Consensus 119 ~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~ 157 (482)
+.|.+.+.++++..+...-.+.+.+.=|.+|+|.-.++.
T Consensus 6 ~qa~~N~~d~~s~lqtae~al~~~~~iL~r~reLavqaa 44 (395)
T d1io1a_ 6 TQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSA 44 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468889999999999999999999999999999665554
Done!