Query 042778
Match_columns 311
No_of_seqs 284 out of 2672
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 09:21:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 6.7E-63 1.4E-67 521.0 30.8 296 15-310 9-379 (1153)
2 PLN03194 putative disease resi 100.0 2.5E-36 5.3E-41 250.5 11.9 123 10-132 18-157 (187)
3 KOG4658 Apoptotic ATPase [Sign 99.9 1.1E-24 2.5E-29 222.3 13.4 156 148-310 161-346 (889)
4 PF00931 NB-ARC: NB-ARC domain 99.9 7.1E-24 1.5E-28 192.5 11.2 145 150-299 1-174 (287)
5 PF01582 TIR: TIR domain; Int 99.7 1.6E-17 3.5E-22 135.5 2.6 80 21-100 1-83 (141)
6 smart00255 TIR Toll - interleu 99.6 1.2E-15 2.6E-20 123.8 9.0 82 18-100 1-83 (140)
7 PF13676 TIR_2: TIR domain; PD 99.5 7.6E-15 1.7E-19 112.8 0.8 74 21-96 1-74 (102)
8 COG2256 MGS1 ATPase related to 99.0 3.4E-09 7.4E-14 97.9 10.6 107 165-294 45-175 (436)
9 PRK00411 cdc6 cell division co 98.9 2.2E-08 4.8E-13 95.1 14.9 147 144-295 29-220 (394)
10 TIGR02928 orc1/cdc6 family rep 98.9 5.6E-08 1.2E-12 91.4 15.5 147 144-295 14-212 (365)
11 PF05729 NACHT: NACHT domain 98.8 4.1E-08 8.8E-13 81.1 10.6 122 169-294 1-162 (166)
12 TIGR03015 pepcterm_ATPase puta 98.7 3.7E-07 7.9E-12 82.0 13.4 122 168-295 43-205 (269)
13 PF13191 AAA_16: AAA ATPase do 98.6 6.6E-08 1.4E-12 81.5 6.2 50 146-195 1-51 (185)
14 PF01637 Arch_ATPase: Archaeal 98.6 1.2E-07 2.7E-12 82.5 7.2 55 147-203 1-55 (234)
15 PRK13342 recombination factor 98.6 4E-07 8.7E-12 87.2 11.1 128 144-295 11-164 (413)
16 TIGR00635 ruvB Holliday juncti 98.5 2.9E-07 6.2E-12 84.5 8.5 143 145-296 4-173 (305)
17 KOG2028 ATPase related to the 98.5 6.2E-07 1.4E-11 82.1 10.1 112 165-294 159-293 (554)
18 cd01128 rho_factor Transcripti 98.5 3.5E-07 7.6E-12 81.4 7.9 88 168-258 16-115 (249)
19 PRK09376 rho transcription ter 98.5 2.8E-07 6.1E-12 86.2 7.3 90 168-260 169-270 (416)
20 PF05496 RuvB_N: Holliday junc 98.5 7.4E-07 1.6E-11 77.3 8.3 54 144-197 23-79 (233)
21 PF13401 AAA_22: AAA domain; P 98.5 4.1E-07 8.8E-12 72.4 6.3 86 168-258 4-99 (131)
22 PTZ00202 tuzin; Provisional 98.4 2.3E-06 5E-11 80.9 10.4 138 144-293 261-432 (550)
23 PRK13341 recombination factor 98.4 2.6E-06 5.6E-11 86.5 11.3 126 145-295 28-181 (725)
24 PRK00080 ruvB Holliday junctio 98.4 6.5E-07 1.4E-11 83.1 6.5 145 144-297 24-195 (328)
25 TIGR01242 26Sp45 26S proteasom 98.3 3.9E-06 8.4E-11 79.1 11.1 147 144-310 121-322 (364)
26 cd00009 AAA The AAA+ (ATPases 98.3 4.5E-06 9.8E-11 66.6 9.8 54 148-203 1-54 (151)
27 PTZ00112 origin recognition co 98.3 6.9E-06 1.5E-10 83.4 12.3 147 144-296 754-950 (1164)
28 TIGR00767 rho transcription te 98.3 2.4E-06 5.2E-11 80.3 8.4 89 168-259 168-268 (415)
29 COG1474 CDC6 Cdc6-related prot 98.3 5.4E-06 1.2E-10 77.9 10.4 109 144-257 16-134 (366)
30 PRK06893 DNA replication initi 98.2 7.9E-06 1.7E-10 72.0 10.2 106 168-299 39-178 (229)
31 KOG3678 SARM protein (with ste 98.2 1.9E-06 4.1E-11 81.0 6.4 70 14-85 608-678 (832)
32 PF13173 AAA_14: AAA domain 98.2 7.7E-06 1.7E-10 65.2 8.5 77 169-264 3-79 (128)
33 PRK03992 proteasome-activating 98.1 4.5E-05 9.7E-10 72.5 12.6 51 145-195 131-192 (389)
34 PRK08727 hypothetical protein; 98.1 3E-05 6.5E-10 68.5 10.7 35 169-203 42-76 (233)
35 PRK04195 replication factor C 98.1 8E-06 1.7E-10 79.8 7.7 134 145-297 14-175 (482)
36 KOG2543 Origin recognition com 98.1 2.3E-05 4.9E-10 72.4 9.8 111 144-262 5-131 (438)
37 TIGR03420 DnaA_homol_Hda DnaA 98.1 2.4E-05 5.3E-10 68.3 9.5 52 150-203 22-73 (226)
38 PRK14949 DNA polymerase III su 98.0 6E-05 1.3E-09 77.3 12.8 136 144-295 15-191 (944)
39 PRK04841 transcriptional regul 98.0 8.9E-05 1.9E-09 77.7 14.8 138 144-294 13-198 (903)
40 TIGR02639 ClpA ATP-dependent C 98.0 3.4E-05 7.4E-10 79.1 11.2 48 144-193 181-228 (731)
41 TIGR03689 pup_AAA proteasome A 98.0 2.3E-05 5E-10 76.4 9.4 52 144-195 181-243 (512)
42 PRK07003 DNA polymerase III su 98.0 5.3E-05 1.2E-09 76.3 11.7 49 144-193 15-63 (830)
43 PRK14963 DNA polymerase III su 98.0 0.00011 2.4E-09 72.0 13.2 145 145-298 14-191 (504)
44 PRK14962 DNA polymerase III su 98.0 0.00012 2.6E-09 71.2 12.8 49 144-193 13-61 (472)
45 TIGR03345 VI_ClpV1 type VI sec 97.9 5.8E-05 1.3E-09 78.4 11.0 49 144-194 186-234 (852)
46 PRK14957 DNA polymerase III su 97.9 0.00015 3.1E-09 71.6 13.1 50 144-194 15-64 (546)
47 TIGR02881 spore_V_K stage V sp 97.9 7.7E-05 1.7E-09 67.0 10.3 47 146-192 7-66 (261)
48 PLN03025 replication factor C 97.9 8.2E-05 1.8E-09 68.8 10.6 136 145-296 13-172 (319)
49 PRK14961 DNA polymerase III su 97.9 0.00029 6.3E-09 66.4 13.8 49 144-193 15-63 (363)
50 PRK06645 DNA polymerase III su 97.9 0.00024 5.2E-09 69.5 13.3 50 144-194 20-69 (507)
51 PRK05642 DNA replication initi 97.9 0.0001 2.3E-09 65.1 9.9 104 168-297 45-181 (234)
52 PRK11331 5-methylcytosine-spec 97.8 4.4E-05 9.6E-10 72.9 7.5 102 145-257 175-283 (459)
53 PRK12323 DNA polymerase III su 97.8 0.00014 3.1E-09 72.3 11.1 50 144-194 15-64 (700)
54 PRK14956 DNA polymerase III su 97.8 0.00027 5.8E-09 68.3 12.3 50 144-194 17-66 (484)
55 PRK12402 replication factor C 97.8 0.00029 6.3E-09 65.2 12.3 48 145-194 15-62 (337)
56 PF04665 Pox_A32: Poxvirus A32 97.8 6.3E-05 1.4E-09 66.4 7.3 35 169-203 14-48 (241)
57 PF00004 AAA: ATPase family as 97.8 6.7E-05 1.4E-09 59.3 6.8 24 171-194 1-24 (132)
58 PF08937 DUF1863: MTH538 TIR-l 97.8 2.9E-05 6.3E-10 62.2 4.6 79 19-98 1-97 (130)
59 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00018 4E-09 75.0 11.6 49 144-194 172-220 (852)
60 PRK14960 DNA polymerase III su 97.8 0.00031 6.8E-09 70.1 12.4 50 144-194 14-63 (702)
61 PRK14951 DNA polymerase III su 97.8 0.00038 8.3E-09 69.5 13.1 49 144-193 15-63 (618)
62 PF05621 TniB: Bacterial TniB 97.8 0.0002 4.3E-09 64.9 10.1 109 144-257 33-156 (302)
63 smart00382 AAA ATPases associa 97.8 0.00011 2.4E-09 57.8 7.5 35 169-203 3-37 (148)
64 PRK07994 DNA polymerase III su 97.8 0.00034 7.3E-09 70.2 12.3 141 144-295 15-191 (647)
65 PHA00729 NTP-binding motif con 97.7 7.4E-05 1.6E-09 65.2 6.7 101 167-297 16-142 (226)
66 cd01133 F1-ATPase_beta F1 ATP 97.7 9E-05 1.9E-09 66.6 7.3 89 168-259 69-176 (274)
67 PRK10865 protein disaggregatio 97.7 0.00011 2.3E-09 76.6 8.9 49 144-194 177-225 (857)
68 PRK00440 rfc replication facto 97.7 0.00035 7.6E-09 64.1 11.5 48 145-194 17-64 (319)
69 PRK08118 topology modulation p 97.7 2.8E-05 6E-10 65.1 3.4 34 170-203 3-39 (167)
70 PF00308 Bac_DnaA: Bacterial d 97.7 0.00027 5.8E-09 61.8 9.6 113 168-297 34-181 (219)
71 PTZ00454 26S protease regulato 97.7 0.00044 9.6E-09 65.8 11.4 52 145-196 145-207 (398)
72 PRK08691 DNA polymerase III su 97.7 0.00051 1.1E-08 69.0 11.9 49 144-193 15-63 (709)
73 PRK05564 DNA polymerase III su 97.6 0.00045 9.7E-09 63.7 10.8 132 145-294 4-164 (313)
74 PRK14964 DNA polymerase III su 97.6 0.00069 1.5E-08 66.0 12.4 49 144-193 12-60 (491)
75 CHL00095 clpC Clp protease ATP 97.6 0.00015 3.2E-09 75.4 8.1 48 144-193 178-225 (821)
76 PRK08084 DNA replication initi 97.6 0.0004 8.7E-09 61.4 9.7 36 168-203 45-80 (235)
77 PRK09087 hypothetical protein; 97.6 0.00015 3.2E-09 63.8 6.8 25 168-192 44-68 (226)
78 PRK12377 putative replication 97.6 0.00018 4E-09 64.0 7.4 36 168-203 101-136 (248)
79 PRK07940 DNA polymerase III su 97.6 0.0012 2.7E-08 62.7 13.4 50 145-194 5-62 (394)
80 PRK14958 DNA polymerase III su 97.6 0.00046 1E-08 67.8 10.6 49 144-193 15-63 (509)
81 PF08357 SEFIR: SEFIR domain; 97.6 7.6E-05 1.7E-09 61.1 4.4 65 20-84 2-71 (150)
82 CHL00176 ftsH cell division pr 97.6 0.00034 7.4E-09 70.4 9.8 51 144-194 182-242 (638)
83 PTZ00361 26 proteosome regulat 97.6 0.00043 9.4E-09 66.5 9.8 52 145-196 183-245 (438)
84 TIGR02880 cbbX_cfxQ probable R 97.6 0.00068 1.5E-08 61.7 10.7 47 146-192 23-82 (284)
85 PRK08116 hypothetical protein; 97.6 0.00016 3.5E-09 65.2 6.4 74 169-256 115-188 (268)
86 PRK00149 dnaA chromosomal repl 97.6 0.00072 1.6E-08 65.6 11.4 113 168-297 148-295 (450)
87 PRK07261 topology modulation p 97.6 0.00026 5.6E-09 59.5 7.2 34 170-203 2-38 (171)
88 PRK12422 chromosomal replicati 97.6 0.00057 1.2E-08 66.0 10.4 113 168-297 141-286 (445)
89 PRK14087 dnaA chromosomal repl 97.5 0.00081 1.8E-08 65.1 11.1 114 168-296 141-289 (450)
90 TIGR02903 spore_lon_C ATP-depe 97.5 0.00072 1.5E-08 68.0 11.0 47 144-192 153-199 (615)
91 PRK07952 DNA replication prote 97.5 0.00035 7.5E-09 62.1 7.8 50 154-203 85-134 (244)
92 TIGR02397 dnaX_nterm DNA polym 97.5 0.0017 3.7E-08 60.6 13.0 49 144-193 13-61 (355)
93 COG1222 RPT1 ATP-dependent 26S 97.5 0.002 4.3E-08 59.5 12.7 146 145-310 151-351 (406)
94 PHA02544 44 clamp loader, smal 97.5 0.0015 3.2E-08 60.1 12.3 49 144-193 20-68 (316)
95 TIGR01241 FtsH_fam ATP-depende 97.5 0.00085 1.8E-08 65.9 10.8 52 144-195 54-115 (495)
96 PRK14969 DNA polymerase III su 97.5 0.00099 2.2E-08 65.8 11.2 50 144-194 15-64 (527)
97 PRK14970 DNA polymerase III su 97.5 0.0018 3.9E-08 61.0 12.5 137 144-298 16-183 (367)
98 PF13207 AAA_17: AAA domain; P 97.5 9.3E-05 2E-09 57.9 3.2 23 170-192 1-23 (121)
99 PRK14955 DNA polymerase III su 97.5 0.00051 1.1E-08 65.5 8.8 50 144-194 15-64 (397)
100 PRK09112 DNA polymerase III su 97.5 0.00082 1.8E-08 63.0 10.0 143 144-295 22-213 (351)
101 PRK14088 dnaA chromosomal repl 97.5 0.0011 2.4E-08 64.1 11.0 113 168-296 130-277 (440)
102 PRK05896 DNA polymerase III su 97.4 0.0013 2.7E-08 65.4 11.4 49 144-193 15-63 (605)
103 PRK12608 transcription termina 97.4 0.00073 1.6E-08 63.3 9.2 98 157-259 123-233 (380)
104 PRK14952 DNA polymerase III su 97.4 0.0024 5.3E-08 63.6 13.3 50 144-194 12-61 (584)
105 COG3903 Predicted ATPase [Gene 97.4 0.00017 3.7E-09 67.5 4.8 124 167-296 13-156 (414)
106 PRK11034 clpA ATP-dependent Cl 97.4 0.00088 1.9E-08 68.7 10.3 47 144-192 185-231 (758)
107 PRK07764 DNA polymerase III su 97.4 0.0019 4.2E-08 66.8 12.8 50 144-194 14-63 (824)
108 TIGR00678 holB DNA polymerase 97.4 0.0049 1.1E-07 52.3 13.3 26 168-193 14-39 (188)
109 PRK14959 DNA polymerase III su 97.4 0.0015 3.3E-08 65.2 11.3 50 144-194 15-64 (624)
110 PRK06696 uridine kinase; Valid 97.4 0.00027 5.8E-09 61.9 5.1 46 149-194 2-48 (223)
111 PRK08903 DnaA regulatory inact 97.4 0.00067 1.4E-08 59.4 7.6 58 145-203 18-77 (227)
112 PRK06620 hypothetical protein; 97.3 0.00033 7.1E-09 61.1 5.3 25 169-193 45-69 (214)
113 CHL00181 cbbX CbbX; Provisiona 97.3 0.003 6.5E-08 57.6 11.7 48 145-192 23-83 (287)
114 PRK09111 DNA polymerase III su 97.3 0.0026 5.6E-08 63.7 11.8 51 144-195 23-73 (598)
115 PRK14954 DNA polymerase III su 97.3 0.0022 4.7E-08 64.4 11.3 50 144-194 15-64 (620)
116 TIGR00362 DnaA chromosomal rep 97.3 0.0023 4.9E-08 61.2 11.1 113 168-297 136-283 (405)
117 PRK07667 uridine kinase; Provi 97.3 0.00056 1.2E-08 58.6 6.2 40 154-193 3-42 (193)
118 PLN00020 ribulose bisphosphate 97.3 0.00021 4.5E-09 66.6 3.6 30 167-196 147-176 (413)
119 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.0014 3.1E-08 57.5 8.8 47 157-203 8-60 (235)
120 TIGR01243 CDC48 AAA family ATP 97.3 0.0046 1E-07 63.7 13.7 53 144-196 452-515 (733)
121 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00028 6E-09 65.8 4.2 51 144-194 50-104 (361)
122 PRK14953 DNA polymerase III su 97.3 0.0068 1.5E-07 59.3 14.0 49 144-193 15-63 (486)
123 TIGR02639 ClpA ATP-dependent C 97.3 0.0042 9.1E-08 63.9 13.1 50 144-193 453-509 (731)
124 COG1484 DnaC DNA replication p 97.2 0.001 2.2E-08 59.6 7.4 37 167-203 104-140 (254)
125 cd01131 PilT Pilus retraction 97.2 0.00096 2.1E-08 57.4 6.8 89 169-264 2-92 (198)
126 PRK14950 DNA polymerase III su 97.2 0.0044 9.5E-08 62.1 12.3 49 144-193 15-63 (585)
127 PRK07471 DNA polymerase III su 97.2 0.0097 2.1E-07 56.1 13.7 48 144-192 18-65 (365)
128 PF07728 AAA_5: AAA domain (dy 97.2 0.00025 5.5E-09 57.0 2.6 22 171-192 2-23 (139)
129 COG2255 RuvB Holliday junction 97.2 0.00037 7.9E-09 62.3 3.6 54 144-197 25-81 (332)
130 PRK06921 hypothetical protein; 97.2 0.00058 1.3E-08 61.5 5.0 36 168-203 117-153 (266)
131 PRK06835 DNA replication prote 97.1 0.0012 2.7E-08 61.2 7.2 35 169-203 184-218 (329)
132 PRK08181 transposase; Validate 97.1 0.0016 3.5E-08 58.7 7.8 35 169-203 107-141 (269)
133 KOG0744 AAA+-type ATPase [Post 97.1 0.0011 2.3E-08 60.4 6.3 78 168-258 177-262 (423)
134 COG3899 Predicted ATPase [Gene 97.1 0.0086 1.9E-07 62.5 13.8 50 146-195 1-51 (849)
135 PRK06305 DNA polymerase III su 97.1 0.0097 2.1E-07 57.7 13.3 49 144-193 16-64 (451)
136 KOG0991 Replication factor C, 97.1 0.0021 4.5E-08 56.1 7.6 97 144-258 26-125 (333)
137 PRK09361 radB DNA repair and r 97.1 0.0026 5.7E-08 55.6 8.4 48 156-203 11-58 (225)
138 COG1618 Predicted nucleotide k 97.1 0.00056 1.2E-08 56.2 3.7 39 168-206 5-45 (179)
139 PF05673 DUF815: Protein of un 97.1 0.0017 3.6E-08 57.3 6.9 52 144-195 26-79 (249)
140 PF01695 IstB_IS21: IstB-like 97.1 0.00071 1.5E-08 57.2 4.5 36 168-203 47-82 (178)
141 PRK08451 DNA polymerase III su 97.1 0.011 2.5E-07 58.1 13.4 48 144-192 13-60 (535)
142 cd01393 recA_like RecA is a b 97.1 0.0041 9E-08 54.2 9.4 48 156-203 7-60 (226)
143 PRK05541 adenylylsulfate kinas 97.1 0.0007 1.5E-08 56.9 4.3 36 168-203 7-42 (176)
144 PRK09183 transposase/IS protei 97.1 0.0024 5.1E-08 57.4 7.9 25 168-192 102-126 (259)
145 TIGR03346 chaperone_ClpB ATP-d 97.0 0.0038 8.2E-08 65.3 10.5 112 144-265 564-688 (852)
146 cd01394 radB RadB. The archaea 97.0 0.0052 1.1E-07 53.4 9.9 49 155-203 6-54 (218)
147 PRK06647 DNA polymerase III su 97.0 0.012 2.6E-07 58.6 13.5 49 144-193 15-63 (563)
148 PF13238 AAA_18: AAA domain; P 97.0 0.00049 1.1E-08 54.0 3.0 22 171-192 1-22 (129)
149 PRK06526 transposase; Provisio 97.0 0.00063 1.4E-08 60.8 3.9 26 168-193 98-123 (254)
150 PRK14086 dnaA chromosomal repl 97.0 0.0066 1.4E-07 60.5 11.3 112 169-297 315-461 (617)
151 PF00485 PRK: Phosphoribulokin 97.0 0.00062 1.3E-08 58.3 3.4 25 170-194 1-25 (194)
152 TIGR02237 recomb_radB DNA repa 97.0 0.0026 5.7E-08 54.8 7.4 44 160-203 4-47 (209)
153 PRK07133 DNA polymerase III su 97.0 0.013 2.8E-07 59.5 13.2 48 145-193 18-65 (725)
154 KOG0733 Nuclear AAA ATPase (VC 97.0 0.0011 2.4E-08 64.9 5.2 53 144-196 189-251 (802)
155 CHL00095 clpC Clp protease ATP 97.0 0.0045 9.8E-08 64.5 10.1 112 144-265 508-632 (821)
156 PRK10865 protein disaggregatio 96.9 0.0054 1.2E-07 64.1 10.5 112 144-265 567-691 (857)
157 PRK06217 hypothetical protein; 96.9 0.0048 1E-07 52.2 8.5 34 170-203 3-39 (183)
158 PRK14948 DNA polymerase III su 96.9 0.016 3.5E-07 58.4 13.5 50 144-194 15-64 (620)
159 TIGR01243 CDC48 AAA family ATP 96.9 0.0028 6.1E-08 65.2 8.3 52 144-195 177-239 (733)
160 KOG2227 Pre-initiation complex 96.9 0.0035 7.6E-08 59.7 8.0 147 144-295 149-338 (529)
161 CHL00195 ycf46 Ycf46; Provisio 96.9 0.0068 1.5E-07 59.2 10.1 51 145-195 228-286 (489)
162 PRK08939 primosomal protein Dn 96.9 0.0073 1.6E-07 55.5 9.8 55 149-203 135-191 (306)
163 cd01120 RecA-like_NTPases RecA 96.9 0.0061 1.3E-07 49.5 8.4 34 170-203 1-34 (165)
164 PRK10787 DNA-binding ATP-depen 96.9 0.0024 5.3E-08 65.9 7.2 53 144-196 321-377 (784)
165 PRK05480 uridine/cytidine kina 96.9 0.001 2.2E-08 57.5 3.8 27 166-192 4-30 (209)
166 COG0542 clpA ATP-binding subun 96.8 0.0071 1.5E-07 61.6 9.8 111 144-265 490-614 (786)
167 PRK08233 hypothetical protein; 96.8 0.001 2.3E-08 55.8 3.5 26 168-193 3-28 (182)
168 COG1373 Predicted ATPase (AAA+ 96.8 0.013 2.8E-07 55.9 11.2 99 170-289 39-161 (398)
169 PRK14971 DNA polymerase III su 96.8 0.018 4E-07 57.9 12.7 49 144-193 16-64 (614)
170 PRK03839 putative kinase; Prov 96.8 0.001 2.2E-08 56.1 3.3 26 170-195 2-27 (180)
171 PRK05563 DNA polymerase III su 96.8 0.03 6.6E-07 55.8 14.1 49 144-193 15-63 (559)
172 PRK06762 hypothetical protein; 96.8 0.0011 2.4E-08 55.0 3.4 25 168-192 2-26 (166)
173 PRK14965 DNA polymerase III su 96.8 0.014 3.1E-07 58.3 11.5 49 144-193 15-63 (576)
174 PTZ00301 uridine kinase; Provi 96.8 0.0012 2.5E-08 57.4 3.3 27 168-194 3-29 (210)
175 TIGR00602 rad24 checkpoint pro 96.7 0.0017 3.6E-08 65.2 4.7 50 144-193 83-135 (637)
176 COG2909 MalT ATP-dependent tra 96.7 0.014 3E-07 59.4 11.1 103 144-256 18-139 (894)
177 PRK00131 aroK shikimate kinase 96.7 0.0013 2.8E-08 54.6 3.4 26 168-193 4-29 (175)
178 cd01121 Sms Sms (bacterial rad 96.7 0.011 2.4E-07 55.8 9.9 94 155-256 69-168 (372)
179 TIGR03345 VI_ClpV1 type VI sec 96.7 0.0087 1.9E-07 62.5 9.9 51 144-194 565-622 (852)
180 PF13671 AAA_33: AAA domain; P 96.7 0.0013 2.9E-08 52.8 3.2 24 170-193 1-24 (143)
181 cd00983 recA RecA is a bacter 96.7 0.0049 1.1E-07 57.0 7.2 48 156-203 42-90 (325)
182 KOG0733 Nuclear AAA ATPase (VC 96.7 0.011 2.3E-07 58.2 9.7 123 168-310 545-710 (802)
183 PF00448 SRP54: SRP54-type pro 96.7 0.003 6.5E-08 54.3 5.4 36 168-203 1-36 (196)
184 PRK04040 adenylate kinase; Pro 96.7 0.0017 3.7E-08 55.4 3.8 25 169-193 3-27 (188)
185 KOG0735 AAA+-type ATPase [Post 96.7 0.0051 1.1E-07 61.4 7.4 73 168-256 431-504 (952)
186 PF01583 APS_kinase: Adenylyls 96.7 0.0023 4.9E-08 52.8 4.3 35 169-203 3-37 (156)
187 TIGR00235 udk uridine kinase. 96.7 0.0017 3.8E-08 56.1 3.8 27 167-193 5-31 (207)
188 COG0572 Udk Uridine kinase [Nu 96.7 0.0022 4.8E-08 55.6 4.4 30 166-195 6-35 (218)
189 PRK15455 PrkA family serine pr 96.7 0.002 4.4E-08 63.4 4.5 52 144-195 75-130 (644)
190 COG0466 Lon ATP-dependent Lon 96.7 0.0023 5E-08 63.8 4.9 137 144-296 322-509 (782)
191 PRK00625 shikimate kinase; Pro 96.7 0.0015 3.3E-08 55.0 3.1 26 170-195 2-27 (173)
192 PRK09354 recA recombinase A; P 96.6 0.0067 1.5E-07 56.5 7.5 48 156-203 47-95 (349)
193 KOG0730 AAA+-type ATPase [Post 96.6 0.032 7E-07 55.4 12.4 154 145-310 434-631 (693)
194 PF08423 Rad51: Rad51; InterP 96.6 0.004 8.6E-08 55.8 5.8 64 156-225 26-95 (256)
195 cd01135 V_A-ATPase_B V/A-type 96.6 0.0073 1.6E-07 54.4 7.3 88 168-259 69-179 (276)
196 PRK13947 shikimate kinase; Pro 96.6 0.0017 3.6E-08 54.1 3.1 27 170-196 3-29 (171)
197 PRK08972 fliI flagellum-specif 96.6 0.0052 1.1E-07 58.9 6.7 86 168-259 162-265 (444)
198 KOG1969 DNA replication checkp 96.6 0.0073 1.6E-07 60.4 7.8 72 167-257 325-398 (877)
199 cd02019 NK Nucleoside/nucleoti 96.6 0.0018 3.9E-08 45.7 2.7 23 170-192 1-23 (69)
200 PF14516 AAA_35: AAA-like doma 96.6 0.046 9.9E-07 50.9 12.7 148 144-296 10-215 (331)
201 cd03115 SRP The signal recogni 96.6 0.008 1.7E-07 50.2 7.0 26 170-195 2-27 (173)
202 PF07726 AAA_3: ATPase family 96.5 0.0018 3.9E-08 51.5 2.7 28 171-198 2-29 (131)
203 TIGR02012 tigrfam_recA protein 96.5 0.0092 2E-07 55.1 7.8 48 156-203 42-90 (321)
204 PRK04301 radA DNA repair and r 96.5 0.023 5E-07 52.5 10.6 59 156-219 90-154 (317)
205 TIGR01360 aden_kin_iso1 adenyl 96.5 0.0021 4.5E-08 54.2 3.3 26 167-192 2-27 (188)
206 TIGR03574 selen_PSTK L-seryl-t 96.5 0.0074 1.6E-07 53.7 7.0 25 170-194 1-25 (249)
207 PRK11034 clpA ATP-dependent Cl 96.5 0.0089 1.9E-07 61.5 8.3 50 144-193 457-513 (758)
208 PRK06547 hypothetical protein; 96.5 0.0026 5.5E-08 53.5 3.7 27 166-192 13-39 (172)
209 PF00006 ATP-synt_ab: ATP synt 96.5 0.0045 9.7E-08 53.9 5.3 83 169-259 16-118 (215)
210 PRK08356 hypothetical protein; 96.5 0.0086 1.9E-07 51.2 7.0 22 168-189 5-26 (195)
211 TIGR01420 pilT_fam pilus retra 96.5 0.0094 2E-07 55.7 7.7 88 168-263 122-212 (343)
212 TIGR00416 sms DNA repair prote 96.5 0.017 3.8E-07 56.0 9.5 52 152-203 78-129 (454)
213 COG0470 HolB ATPase involved i 96.5 0.019 4.2E-07 52.6 9.5 49 146-194 2-50 (325)
214 COG0593 DnaA ATPase involved i 96.5 0.01 2.2E-07 56.3 7.7 115 168-298 113-260 (408)
215 KOG0741 AAA+-type ATPase [Post 96.4 0.012 2.6E-07 57.0 8.0 113 167-299 537-691 (744)
216 PRK09270 nucleoside triphospha 96.4 0.0051 1.1E-07 54.1 5.2 29 166-194 31-59 (229)
217 PRK10733 hflB ATP-dependent me 96.4 0.028 6.2E-07 57.0 11.2 52 145-196 152-213 (644)
218 COG4608 AppF ABC-type oligopep 96.4 0.011 2.3E-07 52.9 7.0 86 168-256 39-137 (268)
219 cd00227 CPT Chloramphenicol (C 96.4 0.0029 6.4E-08 53.1 3.4 25 169-193 3-27 (175)
220 PRK12597 F0F1 ATP synthase sub 96.4 0.01 2.3E-07 57.3 7.2 87 168-258 143-249 (461)
221 PRK00771 signal recognition pa 96.4 0.026 5.7E-07 54.4 10.0 29 167-195 94-122 (437)
222 PRK14722 flhF flagellar biosyn 96.3 0.017 3.8E-07 54.4 8.5 36 168-203 137-174 (374)
223 COG0468 RecA RecA/RadA recombi 96.3 0.038 8.2E-07 50.0 10.3 95 157-257 49-152 (279)
224 PRK03846 adenylylsulfate kinas 96.3 0.0057 1.2E-07 52.5 4.8 37 166-202 22-58 (198)
225 cd02028 UMPK_like Uridine mono 96.3 0.0043 9.2E-08 52.5 4.0 24 170-193 1-24 (179)
226 cd00464 SK Shikimate kinase (S 96.3 0.0032 7E-08 51.2 3.1 24 171-194 2-25 (154)
227 cd02020 CMPK Cytidine monophos 96.3 0.003 6.4E-08 50.9 2.9 24 170-193 1-24 (147)
228 PRK00889 adenylylsulfate kinas 96.3 0.005 1.1E-07 51.6 4.3 27 168-194 4-30 (175)
229 cd02023 UMPK Uridine monophosp 96.3 0.0026 5.6E-08 54.5 2.6 23 170-192 1-23 (198)
230 PF00910 RNA_helicase: RNA hel 96.3 0.0022 4.8E-08 49.4 1.9 26 171-196 1-26 (107)
231 PF08433 KTI12: Chromatin asso 96.3 0.006 1.3E-07 55.1 4.9 26 169-194 2-27 (270)
232 cd02024 NRK1 Nicotinamide ribo 96.3 0.0029 6.2E-08 53.9 2.6 23 170-192 1-23 (187)
233 PRK08927 fliI flagellum-specif 96.3 0.014 3E-07 56.1 7.4 85 168-258 158-260 (442)
234 TIGR03499 FlhF flagellar biosy 96.3 0.03 6.5E-07 50.9 9.4 36 168-203 194-231 (282)
235 KOG2004 Mitochondrial ATP-depe 96.3 0.0055 1.2E-07 61.2 4.8 54 144-197 410-467 (906)
236 TIGR01359 UMP_CMP_kin_fam UMP- 96.3 0.003 6.5E-08 53.2 2.7 23 170-192 1-23 (183)
237 PRK13946 shikimate kinase; Pro 96.2 0.0036 7.9E-08 53.1 3.1 28 168-195 10-37 (184)
238 PLN03187 meiotic recombination 96.2 0.023 4.9E-07 53.1 8.6 60 156-220 114-179 (344)
239 TIGR02238 recomb_DMC1 meiotic 96.2 0.026 5.6E-07 52.1 8.9 61 155-220 83-149 (313)
240 PRK07399 DNA polymerase III su 96.2 0.11 2.4E-06 48.0 13.0 145 145-295 4-195 (314)
241 PRK13949 shikimate kinase; Pro 96.2 0.0039 8.4E-08 52.2 3.1 26 170-195 3-28 (169)
242 COG1428 Deoxynucleoside kinase 96.2 0.0038 8.2E-08 53.6 3.0 26 168-193 4-29 (216)
243 PRK09280 F0F1 ATP synthase sub 96.2 0.014 3.1E-07 56.3 7.2 88 168-259 144-251 (463)
244 KOG0726 26S proteasome regulat 96.2 0.021 4.6E-07 51.5 7.7 51 145-195 185-246 (440)
245 cd02025 PanK Pantothenate kina 96.2 0.0032 6.9E-08 55.1 2.6 24 170-193 1-24 (220)
246 TIGR03305 alt_F1F0_F1_bet alte 96.2 0.011 2.3E-07 57.0 6.3 88 168-259 138-245 (449)
247 PRK08149 ATP synthase SpaL; Va 96.2 0.018 3.9E-07 55.2 7.7 86 168-259 151-254 (428)
248 PRK13531 regulatory ATPase Rav 96.2 0.0064 1.4E-07 58.9 4.6 46 144-193 19-64 (498)
249 KOG0989 Replication factor C, 96.2 0.021 4.5E-07 51.9 7.5 139 144-299 35-205 (346)
250 COG0003 ArsA Predicted ATPase 96.1 0.0092 2E-07 55.1 5.5 35 168-202 2-36 (322)
251 PRK12724 flagellar biosynthesi 96.1 0.022 4.7E-07 54.4 8.0 25 168-192 223-247 (432)
252 PF00158 Sigma54_activat: Sigm 96.1 0.022 4.7E-07 47.7 7.1 47 147-193 1-47 (168)
253 cd02021 GntK Gluconate kinase 96.1 0.004 8.7E-08 50.7 2.6 23 170-192 1-23 (150)
254 PRK11823 DNA repair protein Ra 96.1 0.043 9.3E-07 53.2 10.1 95 154-256 66-166 (446)
255 TIGR02322 phosphon_PhnN phosph 96.1 0.0048 1E-07 51.8 3.1 25 169-193 2-26 (179)
256 PRK13948 shikimate kinase; Pro 96.1 0.005 1.1E-07 52.2 3.2 29 167-195 9-37 (182)
257 PF03205 MobB: Molybdopterin g 96.1 0.0086 1.9E-07 48.6 4.4 35 169-203 1-36 (140)
258 COG0464 SpoVK ATPases of the A 96.1 0.024 5.1E-07 55.7 8.2 123 167-309 275-440 (494)
259 PRK08058 DNA polymerase III su 96.1 0.11 2.4E-06 48.2 12.3 46 146-192 6-52 (329)
260 PLN03186 DNA repair protein RA 96.1 0.032 6.8E-07 52.1 8.6 61 154-219 109-175 (342)
261 TIGR00064 ftsY signal recognit 96.0 0.016 3.6E-07 52.3 6.5 38 166-203 70-107 (272)
262 PRK04182 cytidylate kinase; Pr 96.0 0.0058 1.2E-07 51.1 3.3 24 170-193 2-25 (180)
263 TIGR00150 HI0065_YjeE ATPase, 96.0 0.01 2.3E-07 47.6 4.5 25 168-192 22-46 (133)
264 TIGR01039 atpD ATP synthase, F 96.0 0.023 4.9E-07 54.8 7.6 88 168-259 143-250 (461)
265 PRK13975 thymidylate kinase; P 96.0 0.0065 1.4E-07 51.7 3.5 26 169-194 3-28 (196)
266 PTZ00035 Rad51 protein; Provis 96.0 0.047 1E-06 50.9 9.5 38 154-191 104-141 (337)
267 cd01130 VirB11-like_ATPase Typ 96.0 0.0045 9.7E-08 52.6 2.4 88 168-264 25-118 (186)
268 PRK05057 aroK shikimate kinase 96.0 0.0065 1.4E-07 51.0 3.3 26 168-193 4-29 (172)
269 PRK14974 cell division protein 96.0 0.067 1.4E-06 49.8 10.2 28 167-194 139-166 (336)
270 PRK06936 type III secretion sy 96.0 0.021 4.6E-07 54.8 7.1 86 168-259 162-265 (439)
271 PRK03731 aroL shikimate kinase 95.9 0.0062 1.4E-07 50.7 3.1 25 170-194 4-28 (171)
272 TIGR00763 lon ATP-dependent pr 95.9 0.0095 2.1E-07 61.7 5.0 53 144-196 319-375 (775)
273 cd00071 GMPK Guanosine monopho 95.9 0.0057 1.2E-07 49.3 2.7 27 170-196 1-27 (137)
274 PRK10463 hydrogenase nickel in 95.9 0.056 1.2E-06 49.1 9.3 33 166-198 102-134 (290)
275 TIGR03263 guanyl_kin guanylate 95.9 0.0058 1.2E-07 51.3 2.7 24 169-192 2-25 (180)
276 COG0467 RAD55 RecA-superfamily 95.9 0.028 6E-07 50.3 7.3 45 159-203 14-58 (260)
277 PRK05703 flhF flagellar biosyn 95.9 0.057 1.2E-06 52.0 9.8 36 168-203 221-258 (424)
278 cd01132 F1_ATPase_alpha F1 ATP 95.9 0.028 6.1E-07 50.6 7.1 92 168-264 69-180 (274)
279 TIGR01313 therm_gnt_kin carboh 95.9 0.0052 1.1E-07 50.8 2.4 22 171-192 1-22 (163)
280 PRK14530 adenylate kinase; Pro 95.9 0.0066 1.4E-07 52.8 3.1 23 170-192 5-27 (215)
281 PRK05922 type III secretion sy 95.9 0.036 7.8E-07 53.2 8.3 86 168-259 157-260 (434)
282 PRK05707 DNA polymerase III su 95.9 0.25 5.3E-06 46.0 13.7 27 168-194 22-48 (328)
283 COG2607 Predicted ATPase (AAA+ 95.9 0.032 6.9E-07 49.0 7.2 55 144-198 59-115 (287)
284 PRK13765 ATP-dependent proteas 95.9 0.016 3.6E-07 58.3 6.2 74 144-227 30-104 (637)
285 COG0703 AroK Shikimate kinase 95.9 0.0072 1.6E-07 50.5 3.1 84 169-253 3-102 (172)
286 PRK12339 2-phosphoglycerate ki 95.9 0.008 1.7E-07 51.7 3.5 25 168-192 3-27 (197)
287 PRK05201 hslU ATP-dependent pr 95.9 0.013 2.8E-07 55.8 5.2 53 144-196 14-78 (443)
288 TIGR00390 hslU ATP-dependent p 95.9 0.012 2.5E-07 56.1 4.8 53 144-196 11-75 (441)
289 PRK12723 flagellar biosynthesi 95.9 0.064 1.4E-06 50.9 9.8 27 167-193 173-199 (388)
290 PRK11889 flhF flagellar biosyn 95.9 0.018 3.9E-07 54.5 6.0 27 167-193 240-266 (436)
291 PLN02318 phosphoribulokinase/u 95.8 0.01 2.2E-07 58.7 4.6 35 158-192 55-89 (656)
292 PRK12727 flagellar biosynthesi 95.8 0.055 1.2E-06 53.1 9.5 27 168-194 350-376 (559)
293 TIGR02239 recomb_RAD51 DNA rep 95.8 0.036 7.9E-07 51.2 8.0 50 154-203 82-137 (316)
294 TIGR00764 lon_rel lon-related 95.8 0.023 4.9E-07 57.2 7.0 58 144-205 17-75 (608)
295 PTZ00088 adenylate kinase 1; P 95.8 0.012 2.6E-07 51.8 4.5 23 170-192 8-30 (229)
296 KOG0652 26S proteasome regulat 95.8 0.088 1.9E-06 46.9 9.7 50 145-194 171-231 (424)
297 PRK14738 gmk guanylate kinase; 95.8 0.0086 1.9E-07 51.8 3.5 31 161-191 6-36 (206)
298 cd01129 PulE-GspE PulE/GspE Th 95.8 0.07 1.5E-06 48.0 9.5 87 168-264 80-167 (264)
299 PRK10751 molybdopterin-guanine 95.8 0.011 2.3E-07 49.8 3.9 28 167-194 5-32 (173)
300 PRK05439 pantothenate kinase; 95.8 0.015 3.2E-07 53.5 5.1 28 166-193 84-111 (311)
301 PF12775 AAA_7: P-loop contain 95.8 0.01 2.2E-07 53.6 4.1 37 154-193 22-58 (272)
302 cd01136 ATPase_flagellum-secre 95.8 0.033 7.2E-07 51.6 7.4 86 168-259 69-172 (326)
303 COG1936 Predicted nucleotide k 95.8 0.0063 1.4E-07 50.7 2.4 20 170-189 2-21 (180)
304 PRK06002 fliI flagellum-specif 95.8 0.022 4.7E-07 54.9 6.4 86 168-259 165-267 (450)
305 PF03308 ArgK: ArgK protein; 95.8 0.015 3.4E-07 51.6 4.9 42 153-194 14-55 (266)
306 PRK00300 gmk guanylate kinase; 95.8 0.0077 1.7E-07 51.7 3.0 26 168-193 5-30 (205)
307 TIGR03324 alt_F1F0_F1_al alter 95.8 0.033 7.1E-07 54.2 7.5 86 168-259 162-267 (497)
308 PF00625 Guanylate_kin: Guanyl 95.8 0.011 2.4E-07 50.0 3.9 36 168-203 2-37 (183)
309 PRK10078 ribose 1,5-bisphospho 95.7 0.0074 1.6E-07 51.2 2.8 25 169-193 3-27 (186)
310 TIGR02173 cyt_kin_arch cytidyl 95.7 0.0092 2E-07 49.4 3.3 23 170-192 2-24 (171)
311 PRK12678 transcription termina 95.7 0.023 5E-07 56.0 6.4 90 168-260 416-517 (672)
312 KOG1514 Origin recognition com 95.7 0.054 1.2E-06 54.2 8.9 108 144-257 395-519 (767)
313 TIGR02640 gas_vesic_GvpN gas v 95.7 0.01 2.2E-07 53.3 3.6 24 170-193 23-46 (262)
314 COG2812 DnaX DNA polymerase II 95.7 0.038 8.3E-07 54.1 7.8 141 144-295 15-191 (515)
315 COG3267 ExeA Type II secretory 95.7 0.18 4E-06 44.7 11.2 124 165-294 48-212 (269)
316 PRK04296 thymidine kinase; Pro 95.7 0.013 2.9E-07 49.9 4.1 34 169-202 3-36 (190)
317 cd01672 TMPK Thymidine monopho 95.7 0.026 5.7E-07 47.7 5.9 25 170-194 2-26 (200)
318 COG1102 Cmk Cytidylate kinase 95.7 0.0093 2E-07 49.1 2.9 26 170-195 2-27 (179)
319 cd01983 Fer4_NifH The Fer4_Nif 95.6 0.0085 1.8E-07 44.1 2.5 25 170-194 1-25 (99)
320 PRK15453 phosphoribulokinase; 95.6 0.017 3.7E-07 52.2 4.8 28 166-193 3-30 (290)
321 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.6 0.029 6.3E-07 45.5 5.8 35 168-203 26-60 (144)
322 PRK09435 membrane ATPase/prote 95.6 0.018 4E-07 53.4 5.1 40 155-194 43-82 (332)
323 COG3640 CooC CO dehydrogenase 95.6 0.022 4.8E-07 49.8 5.2 24 170-193 2-25 (255)
324 PRK14493 putative bifunctional 95.6 0.015 3.3E-07 52.6 4.4 34 169-203 2-35 (274)
325 COG1419 FlhF Flagellar GTP-bin 95.6 0.063 1.4E-06 50.7 8.6 36 168-203 203-240 (407)
326 TIGR00554 panK_bact pantothena 95.6 0.017 3.7E-07 52.6 4.8 27 166-192 60-86 (290)
327 PF03266 NTPase_1: NTPase; In 95.6 0.0091 2E-07 50.0 2.7 24 171-194 2-25 (168)
328 COG1124 DppF ABC-type dipeptid 95.6 0.013 2.8E-07 51.4 3.7 23 168-190 33-55 (252)
329 COG0563 Adk Adenylate kinase a 95.6 0.01 2.3E-07 50.1 2.9 22 170-191 2-23 (178)
330 COG2842 Uncharacterized ATPase 95.5 0.047 1E-06 49.3 7.1 145 144-298 71-226 (297)
331 TIGR03878 thermo_KaiC_2 KaiC d 95.5 0.021 4.6E-07 51.2 5.1 36 168-203 36-71 (259)
332 TIGR00176 mobB molybdopterin-g 95.5 0.0097 2.1E-07 49.1 2.6 26 170-195 1-26 (155)
333 TIGR03496 FliI_clade1 flagella 95.5 0.039 8.4E-07 52.8 7.0 85 168-258 137-239 (411)
334 PRK05537 bifunctional sulfate 95.5 0.022 4.8E-07 56.8 5.5 51 144-194 368-418 (568)
335 COG1703 ArgK Putative periplas 95.5 0.017 3.6E-07 52.3 4.2 40 154-193 37-76 (323)
336 cd02027 APSK Adenosine 5'-phos 95.5 0.01 2.3E-07 48.5 2.7 24 170-193 1-24 (149)
337 PRK09519 recA DNA recombinatio 95.5 0.16 3.5E-06 52.2 11.7 93 154-256 45-148 (790)
338 KOG0734 AAA+-type ATPase conta 95.5 0.051 1.1E-06 52.9 7.5 47 144-190 303-359 (752)
339 PRK05342 clpX ATP-dependent pr 95.4 0.021 4.5E-07 54.7 5.0 50 144-193 70-133 (412)
340 PRK05688 fliI flagellum-specif 95.4 0.033 7.2E-07 53.7 6.3 86 168-259 168-271 (451)
341 PLN02924 thymidylate kinase 95.4 0.066 1.4E-06 46.8 7.7 28 168-195 16-43 (220)
342 PRK13768 GTPase; Provisional 95.4 0.021 4.4E-07 51.1 4.6 25 168-192 2-26 (253)
343 TIGR01287 nifH nitrogenase iro 95.4 0.011 2.4E-07 53.3 2.8 24 169-192 1-24 (275)
344 TIGR02782 TrbB_P P-type conjug 95.4 0.031 6.6E-07 51.3 5.7 87 169-264 133-222 (299)
345 PRK13695 putative NTPase; Prov 95.4 0.017 3.7E-07 48.3 3.8 24 170-193 2-25 (174)
346 PLN02200 adenylate kinase fami 95.4 0.014 3.1E-07 51.5 3.4 25 168-192 43-67 (234)
347 KOG1532 GTPase XAB1, interacts 95.4 0.018 3.8E-07 51.5 3.9 32 167-198 18-49 (366)
348 PRK10867 signal recognition pa 95.4 0.11 2.5E-06 50.0 9.7 29 167-195 99-127 (433)
349 KOG0727 26S proteasome regulat 95.4 0.02 4.3E-07 50.7 4.1 52 145-196 155-217 (408)
350 COG1066 Sms Predicted ATP-depe 95.4 0.12 2.7E-06 48.8 9.6 94 154-256 79-178 (456)
351 PRK06761 hypothetical protein; 95.4 0.015 3.2E-07 52.8 3.4 34 169-202 4-38 (282)
352 cd00561 CobA_CobO_BtuR ATP:cor 95.4 0.19 4.2E-06 41.6 9.8 24 169-192 3-26 (159)
353 COG0237 CoaE Dephospho-CoA kin 95.4 0.014 3.1E-07 50.2 3.2 23 168-190 2-24 (201)
354 cd01428 ADK Adenylate kinase ( 95.4 0.013 2.8E-07 49.6 2.9 22 171-192 2-23 (194)
355 PF13521 AAA_28: AAA domain; P 95.4 0.014 2.9E-07 48.3 3.0 21 171-191 2-22 (163)
356 PLN02348 phosphoribulokinase 95.4 0.023 4.9E-07 53.7 4.7 30 165-194 46-75 (395)
357 TIGR01425 SRP54_euk signal rec 95.4 0.073 1.6E-06 51.1 8.2 28 167-194 99-126 (429)
358 TIGR01041 ATP_syn_B_arch ATP s 95.3 0.049 1.1E-06 52.7 7.1 87 168-258 141-250 (458)
359 PRK12726 flagellar biosynthesi 95.3 0.073 1.6E-06 50.2 8.0 37 167-203 205-241 (407)
360 PRK14527 adenylate kinase; Pro 95.3 0.015 3.2E-07 49.5 3.2 26 167-192 5-30 (191)
361 TIGR03498 FliI_clade3 flagella 95.3 0.039 8.6E-07 52.8 6.3 86 168-259 140-243 (418)
362 PRK09825 idnK D-gluconate kina 95.3 0.016 3.4E-07 48.9 3.2 25 169-193 4-28 (176)
363 cd02022 DPCK Dephospho-coenzym 95.3 0.012 2.7E-07 49.5 2.6 21 170-190 1-21 (179)
364 TIGR03881 KaiC_arch_4 KaiC dom 95.3 0.038 8.2E-07 48.3 5.8 48 156-203 8-55 (229)
365 PF00437 T2SE: Type II/IV secr 95.3 0.017 3.8E-07 51.8 3.7 110 145-264 104-215 (270)
366 TIGR03877 thermo_KaiC_1 KaiC d 95.3 0.072 1.6E-06 47.0 7.5 49 155-203 8-56 (237)
367 PF14532 Sigma54_activ_2: Sigm 95.3 0.0092 2E-07 48.0 1.7 47 148-194 1-47 (138)
368 KOG0729 26S proteasome regulat 95.3 0.074 1.6E-06 47.5 7.3 92 145-256 177-280 (435)
369 PRK01184 hypothetical protein; 95.3 0.015 3.3E-07 49.0 3.0 22 169-191 2-23 (184)
370 PRK06067 flagellar accessory p 95.2 0.062 1.3E-06 47.2 7.0 47 156-203 13-60 (234)
371 PF08477 Miro: Miro-like prote 95.2 0.016 3.4E-07 44.8 2.9 21 171-191 2-22 (119)
372 cd01124 KaiC KaiC is a circadi 95.2 0.045 9.7E-07 46.0 5.8 33 171-203 2-34 (187)
373 PF03029 ATP_bind_1: Conserved 95.2 0.019 4.1E-07 50.9 3.7 23 173-195 1-23 (238)
374 PRK10416 signal recognition pa 95.2 0.037 8E-07 51.2 5.7 29 167-195 113-141 (318)
375 CHL00060 atpB ATP synthase CF1 95.2 0.055 1.2E-06 52.6 7.0 88 168-259 161-275 (494)
376 PRK15429 formate hydrogenlyase 95.2 0.062 1.3E-06 55.0 7.9 48 145-192 376-423 (686)
377 KOG0739 AAA+-type ATPase [Post 95.2 0.084 1.8E-06 47.9 7.6 51 145-195 133-193 (439)
378 PRK14532 adenylate kinase; Pro 95.2 0.016 3.4E-07 49.1 2.9 22 171-192 3-24 (188)
379 TIGR00041 DTMP_kinase thymidyl 95.2 0.054 1.2E-06 45.9 6.3 26 169-194 4-29 (195)
380 TIGR00073 hypB hydrogenase acc 95.2 0.02 4.3E-07 49.5 3.6 28 166-193 20-47 (207)
381 TIGR03596 GTPase_YlqF ribosome 95.2 0.13 2.7E-06 46.6 9.0 44 148-191 89-141 (276)
382 PRK08154 anaerobic benzoate ca 95.2 0.028 6.1E-07 51.8 4.8 28 166-193 131-158 (309)
383 COG0529 CysC Adenylylsulfate k 95.2 0.033 7.2E-07 46.6 4.6 36 167-202 22-57 (197)
384 PRK07594 type III secretion sy 95.2 0.037 8E-07 53.1 5.7 26 168-193 155-180 (433)
385 PRK14721 flhF flagellar biosyn 95.2 0.14 3.1E-06 49.0 9.6 25 167-191 190-214 (420)
386 cd02034 CooC The accessory pro 95.2 0.03 6.4E-07 43.9 4.2 25 171-195 2-26 (116)
387 cd04159 Arl10_like Arl10-like 95.1 0.097 2.1E-06 41.9 7.4 21 171-191 2-22 (159)
388 cd02117 NifH_like This family 95.1 0.016 3.5E-07 50.2 2.9 25 169-193 1-25 (212)
389 COG1100 GTPase SAR1 and relate 95.1 0.014 3.1E-07 50.3 2.5 23 169-191 6-28 (219)
390 PF13086 AAA_11: AAA domain; P 95.1 0.041 8.9E-07 47.5 5.4 50 170-224 19-75 (236)
391 TIGR00750 lao LAO/AO transport 95.1 0.03 6.4E-07 51.4 4.7 36 157-192 23-58 (300)
392 CHL00059 atpA ATP synthase CF1 95.1 0.053 1.1E-06 52.6 6.5 85 168-258 141-245 (485)
393 COG1763 MobB Molybdopterin-gua 95.1 0.018 3.9E-07 47.7 2.8 35 168-202 2-36 (161)
394 PHA02530 pseT polynucleotide k 95.1 0.019 4.2E-07 52.3 3.4 24 169-192 3-26 (300)
395 cd00820 PEPCK_HprK Phosphoenol 95.1 0.02 4.3E-07 44.1 2.9 22 168-189 15-36 (107)
396 PF10137 TIR-like: Predicted n 95.1 0.061 1.3E-06 42.7 5.7 59 21-82 2-61 (125)
397 PRK14531 adenylate kinase; Pro 95.1 0.022 4.7E-07 48.2 3.4 24 169-192 3-26 (183)
398 PRK08099 bifunctional DNA-bind 95.1 0.017 3.8E-07 55.0 3.1 26 167-192 218-243 (399)
399 TIGR00382 clpX endopeptidase C 95.0 0.038 8.1E-07 52.9 5.3 50 144-193 76-141 (413)
400 PRK07196 fliI flagellum-specif 95.0 0.059 1.3E-06 51.8 6.6 25 168-192 155-179 (434)
401 COG0542 clpA ATP-binding subun 95.0 0.029 6.4E-07 57.2 4.7 48 144-193 169-216 (786)
402 COG0194 Gmk Guanylate kinase [ 95.0 0.026 5.6E-07 47.7 3.6 25 168-192 4-28 (191)
403 KOG3347 Predicted nucleotide k 95.0 0.019 4.2E-07 46.7 2.8 24 168-191 7-30 (176)
404 PF00005 ABC_tran: ABC transpo 95.0 0.017 3.6E-07 46.1 2.4 25 169-193 12-36 (137)
405 cd01122 GP4d_helicase GP4d_hel 95.0 0.27 5.8E-06 44.0 10.6 53 168-227 30-83 (271)
406 PRK05800 cobU adenosylcobinami 95.0 0.14 3E-06 42.9 8.0 77 170-256 3-86 (170)
407 PF02374 ArsA_ATPase: Anion-tr 95.0 0.033 7E-07 51.3 4.6 23 169-191 2-24 (305)
408 PRK14737 gmk guanylate kinase; 95.0 0.024 5.1E-07 48.3 3.4 25 168-192 4-28 (186)
409 cd03116 MobB Molybdenum is an 95.0 0.038 8.3E-07 45.8 4.5 27 169-195 2-28 (159)
410 COG0055 AtpD F0F1-type ATP syn 95.0 0.048 1E-06 50.8 5.5 98 168-268 147-267 (468)
411 smart00072 GuKc Guanylate kina 95.0 0.023 5E-07 48.1 3.3 30 168-197 2-31 (184)
412 PLN02796 D-glycerate 3-kinase 94.9 0.022 4.7E-07 53.0 3.3 28 167-194 99-126 (347)
413 COG0714 MoxR-like ATPases [Gen 94.9 0.039 8.5E-07 51.2 5.1 50 145-198 24-73 (329)
414 PHA02244 ATPase-like protein 94.9 0.027 5.8E-07 52.9 3.9 26 170-195 121-146 (383)
415 COG1223 Predicted ATPase (AAA+ 94.9 0.032 6.9E-07 49.7 4.1 57 140-196 116-179 (368)
416 TIGR01040 V-ATPase_V1_B V-type 94.9 0.073 1.6E-06 51.3 6.9 26 168-193 141-166 (466)
417 PF06309 Torsin: Torsin; Inte 94.9 0.047 1E-06 43.2 4.7 48 144-191 24-76 (127)
418 PRK07721 fliI flagellum-specif 94.9 0.1 2.2E-06 50.4 7.9 27 167-193 157-183 (438)
419 PRK11608 pspF phage shock prot 94.9 0.026 5.6E-07 52.4 3.7 47 145-191 6-52 (326)
420 PRK08472 fliI flagellum-specif 94.9 0.06 1.3E-06 51.7 6.2 26 168-193 157-182 (434)
421 cd04139 RalA_RalB RalA/RalB su 94.9 0.02 4.4E-07 46.5 2.7 22 170-191 2-23 (164)
422 PRK00698 tmk thymidylate kinas 94.9 0.072 1.6E-06 45.4 6.3 25 169-193 4-28 (205)
423 KOG1970 Checkpoint RAD17-RFC c 94.9 0.067 1.5E-06 52.2 6.5 40 153-192 90-134 (634)
424 TIGR03497 FliI_clade2 flagella 94.9 0.079 1.7E-06 50.8 7.0 28 167-194 136-163 (413)
425 PRK12338 hypothetical protein; 94.9 0.025 5.4E-07 52.1 3.4 25 168-192 4-28 (319)
426 PRK13230 nitrogenase reductase 94.9 0.023 4.9E-07 51.4 3.1 24 169-192 2-25 (279)
427 TIGR02524 dot_icm_DotB Dot/Icm 94.9 0.05 1.1E-06 51.1 5.5 90 168-263 134-229 (358)
428 TIGR00017 cmk cytidylate kinas 94.8 0.026 5.6E-07 49.3 3.4 25 169-193 3-27 (217)
429 PRK14490 putative bifunctional 94.8 0.028 6.2E-07 53.1 3.9 29 168-196 5-33 (369)
430 TIGR02788 VirB11 P-type DNA tr 94.8 0.043 9.4E-07 50.5 5.0 92 168-264 144-236 (308)
431 TIGR02236 recomb_radA DNA repa 94.8 0.12 2.5E-06 47.6 7.8 59 156-219 83-147 (310)
432 PRK07960 fliI flagellum-specif 94.8 0.032 6.8E-07 53.8 4.1 26 168-193 175-200 (455)
433 TIGR00455 apsK adenylylsulfate 94.8 0.028 6.1E-07 47.4 3.4 27 167-193 17-43 (184)
434 COG2019 AdkA Archaeal adenylat 94.8 0.029 6.3E-07 46.5 3.3 25 168-192 4-28 (189)
435 cd03114 ArgK-like The function 94.8 0.035 7.6E-07 45.4 3.8 25 170-194 1-25 (148)
436 PF03215 Rad17: Rad17 cell cyc 94.8 0.044 9.4E-07 54.0 5.1 55 146-202 20-77 (519)
437 TIGR02902 spore_lonB ATP-depen 94.8 0.035 7.7E-07 55.0 4.5 45 145-191 65-109 (531)
438 cd00544 CobU Adenosylcobinamid 94.8 0.14 3.1E-06 42.8 7.5 77 171-256 2-83 (169)
439 PRK14529 adenylate kinase; Pro 94.8 0.14 3.1E-06 44.8 7.8 23 171-193 3-25 (223)
440 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.8 0.024 5.1E-07 49.2 2.9 25 168-192 30-54 (218)
441 PRK06820 type III secretion sy 94.7 0.11 2.5E-06 49.9 7.7 25 168-192 163-187 (440)
442 PF07693 KAP_NTPase: KAP famil 94.7 0.13 2.8E-06 47.2 8.0 44 152-195 3-47 (325)
443 PF06564 YhjQ: YhjQ protein; 94.7 0.024 5.1E-07 50.2 2.9 24 169-192 2-26 (243)
444 cd02029 PRK_like Phosphoribulo 94.7 0.034 7.4E-07 49.9 3.9 24 170-193 1-24 (277)
445 cd02040 NifH NifH gene encodes 94.7 0.024 5.2E-07 50.7 3.0 25 169-193 2-26 (270)
446 PRK06995 flhF flagellar biosyn 94.7 0.16 3.5E-06 49.5 8.7 25 168-192 256-280 (484)
447 PRK09099 type III secretion sy 94.7 0.062 1.3E-06 51.8 5.8 87 167-259 162-266 (441)
448 PRK02496 adk adenylate kinase; 94.7 0.03 6.6E-07 47.2 3.4 23 170-192 3-25 (184)
449 PF13614 AAA_31: AAA domain; P 94.7 0.048 1E-06 44.4 4.4 35 169-203 1-36 (157)
450 PF00154 RecA: recA bacterial 94.7 0.098 2.1E-06 48.3 6.8 94 155-258 39-143 (322)
451 TIGR01663 PNK-3'Pase polynucle 94.7 0.13 2.9E-06 50.7 8.2 26 166-191 367-392 (526)
452 PRK13232 nifH nitrogenase redu 94.7 0.024 5.2E-07 51.1 2.9 24 169-192 2-25 (273)
453 TIGR00962 atpA proton transloc 94.7 0.07 1.5E-06 52.3 6.2 85 168-258 161-265 (501)
454 PF00142 Fer4_NifH: 4Fe-4S iro 94.7 0.027 5.9E-07 50.2 3.0 27 169-195 1-27 (273)
455 cd03225 ABC_cobalt_CbiO_domain 94.7 0.026 5.6E-07 48.6 2.9 25 168-192 27-51 (211)
456 PRK00279 adk adenylate kinase; 94.6 0.029 6.4E-07 48.7 3.2 23 170-192 2-24 (215)
457 TIGR01351 adk adenylate kinase 94.6 0.027 5.8E-07 48.7 2.9 22 171-192 2-23 (210)
458 PLN02165 adenylate isopentenyl 94.6 0.03 6.5E-07 51.8 3.3 26 168-193 43-68 (334)
459 PRK04196 V-type ATP synthase s 94.6 0.069 1.5E-06 51.8 5.9 87 168-258 143-252 (460)
460 PF06068 TIP49: TIP49 C-termin 94.6 0.065 1.4E-06 50.1 5.5 56 144-199 23-81 (398)
461 PRK10536 hypothetical protein; 94.6 0.076 1.6E-06 47.4 5.7 53 145-201 55-109 (262)
462 PRK13900 type IV secretion sys 94.6 0.057 1.2E-06 50.3 5.1 92 168-264 160-253 (332)
463 PRK07429 phosphoribulokinase; 94.6 0.051 1.1E-06 50.4 4.8 30 166-195 6-35 (327)
464 PF01926 MMR_HSR1: 50S ribosom 94.6 0.028 6E-07 43.5 2.6 21 171-191 2-22 (116)
465 PTZ00185 ATPase alpha subunit; 94.6 0.1 2.2E-06 51.0 6.9 86 168-258 189-301 (574)
466 TIGR00960 3a0501s02 Type II (G 94.6 0.028 6E-07 48.7 2.9 25 168-192 29-53 (216)
467 cd01857 HSR1_MMR1 HSR1/MMR1. 94.6 0.082 1.8E-06 42.6 5.5 22 170-191 85-106 (141)
468 PRK14730 coaE dephospho-CoA ki 94.6 0.031 6.8E-07 47.9 3.1 23 169-191 2-24 (195)
469 PRK09281 F0F1 ATP synthase sub 94.6 0.089 1.9E-06 51.6 6.6 91 168-264 162-273 (502)
470 COG4088 Predicted nucleotide k 94.6 0.026 5.7E-07 48.5 2.5 27 169-195 2-28 (261)
471 TIGR01026 fliI_yscN ATPase Fli 94.6 0.094 2E-06 50.7 6.7 26 168-193 163-188 (440)
472 TIGR00959 ffh signal recogniti 94.6 0.65 1.4E-05 44.7 12.4 26 168-193 99-124 (428)
473 cd01858 NGP_1 NGP-1. Autoanti 94.5 0.054 1.2E-06 44.4 4.4 44 148-191 81-125 (157)
474 cd02026 PRK Phosphoribulokinas 94.5 0.025 5.4E-07 51.2 2.6 24 170-193 1-24 (273)
475 PRK13343 F0F1 ATP synthase sub 94.5 0.073 1.6E-06 52.0 5.9 85 168-258 162-266 (502)
476 cd01862 Rab7 Rab7 subfamily. 94.5 0.026 5.7E-07 46.3 2.5 22 170-191 2-23 (172)
477 PRK08533 flagellar accessory p 94.5 0.046 1E-06 48.1 4.2 45 158-203 14-59 (230)
478 TIGR01166 cbiO cobalt transpor 94.5 0.03 6.4E-07 47.5 2.9 25 168-192 18-42 (190)
479 cd03229 ABC_Class3 This class 94.5 0.031 6.6E-07 47.0 3.0 35 168-203 26-60 (178)
480 TIGR00101 ureG urease accessor 94.5 0.047 1E-06 47.0 4.1 28 169-196 2-29 (199)
481 PRK14723 flhF flagellar biosyn 94.5 0.19 4.2E-06 51.5 9.1 25 168-192 185-209 (767)
482 KOG0736 Peroxisome assembly fa 94.5 0.13 2.8E-06 52.2 7.5 93 145-257 672-775 (953)
483 TIGR02030 BchI-ChlI magnesium 94.5 0.057 1.2E-06 50.3 4.9 46 145-192 4-49 (337)
484 KOG0743 AAA+-type ATPase [Post 94.5 0.056 1.2E-06 51.5 4.8 25 169-193 236-260 (457)
485 cd04119 RJL RJL (RabJ-Like) su 94.5 0.03 6.5E-07 45.6 2.7 21 171-191 3-23 (168)
486 PRK13233 nifH nitrogenase redu 94.4 0.045 9.7E-07 49.3 4.0 26 169-194 3-28 (275)
487 PRK02118 V-type ATP synthase s 94.4 0.12 2.7E-06 49.5 7.1 86 168-259 140-244 (436)
488 PF01078 Mg_chelatase: Magnesi 94.4 0.064 1.4E-06 46.3 4.7 43 145-191 3-45 (206)
489 cd03269 ABC_putative_ATPase Th 94.4 0.032 6.9E-07 48.1 2.9 25 168-192 26-50 (210)
490 PRK07165 F0F1 ATP synthase sub 94.4 0.11 2.3E-06 50.8 6.7 86 168-258 143-245 (507)
491 TIGR02673 FtsE cell division A 94.4 0.032 6.9E-07 48.2 2.9 25 168-192 28-52 (214)
492 cd03261 ABC_Org_Solvent_Resist 94.4 0.032 6.8E-07 49.0 2.9 24 168-191 26-49 (235)
493 PF10662 PduV-EutP: Ethanolami 94.4 0.032 7E-07 45.3 2.6 23 169-191 2-24 (143)
494 TIGR01817 nifA Nif-specific re 94.4 0.062 1.3E-06 53.3 5.2 50 144-193 195-244 (534)
495 PRK14528 adenylate kinase; Pro 94.4 0.037 8.1E-07 47.0 3.2 24 169-192 2-25 (186)
496 cd03256 ABC_PhnC_transporter A 94.4 0.032 7E-07 49.1 2.9 24 168-191 27-50 (241)
497 cd03259 ABC_Carb_Solutes_like 94.4 0.033 7.2E-07 48.1 2.9 24 168-191 26-49 (213)
498 PF00406 ADK: Adenylate kinase 94.4 0.03 6.4E-07 45.7 2.5 20 173-192 1-20 (151)
499 KOG3354 Gluconate kinase [Carb 94.4 0.041 8.9E-07 45.1 3.2 29 168-196 12-40 (191)
500 PRK04220 2-phosphoglycerate ki 94.4 0.036 7.9E-07 50.6 3.2 25 168-192 92-116 (301)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.7e-63 Score=520.99 Aligned_cols=296 Identities=37% Similarity=0.602 Sum_probs=257.2
Q ss_pred CCCcccEEecCccccCCCChHHHHHHHHHhCCCcEEeeCCCCCCCcchHHHHHHHHhccceeeeeccCcccccchHHHHH
Q 042778 15 RNHKYDVFQSFRGEDNRDNFTGHLYSALSQKGIETFIDDQLNRGDEISQSLVDAIEASAISLIIFSEAYASSRWCLDELV 94 (311)
Q Consensus 15 ~~~~~dvFis~~g~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wcl~El~ 94 (311)
+.++|||||||||+|+|++|++||+++|.++||++|+|+++++|+.|.+++.+||++|+++|||||+|||+|.|||+||+
T Consensus 9 ~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~ 88 (1153)
T PLN03210 9 RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELL 88 (1153)
T ss_pred CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHH
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred HHHhhH-------------------------hHHHHhHhH-----HHHHHHHHHHHHHhhhcCCccCCCC-c--------
Q 042778 95 KILTRE-------------------------LEEMFKENS-----EKLQTWRNALKEAAGLSGFHSQNIR-L-------- 135 (311)
Q Consensus 95 ~i~e~~-------------------------~~~~~~~~~-----~~v~~w~~~l~~~~~~~g~~~~~~~-e-------- 135 (311)
+|++|+ ||++|.+|+ +++++||+||++++++.||++.... |
T Consensus 89 ~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv 168 (1153)
T PLN03210 89 EIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIA 168 (1153)
T ss_pred HHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHH
Confidence 999997 999999886 7899999999999999999887644 4
Q ss_pred ccccCCCC------CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecC--cc
Q 042778 136 AEVSPCSN------KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNV--RE 207 (311)
Q Consensus 136 ~~i~~~l~------~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~--~~ 207 (311)
++|..+++ .+++||++.++++|..+|..+.+++++||||||||+||||||+++|+++..+|++.+|+.+. ..
T Consensus 169 ~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 169 NDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred HHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 56666654 56899999999999999987777899999999999999999999999999999999998642 11
Q ss_pred c---cCC----C-CChHHHHHHHHHHHhcCCC-CCCCHHHHHHHhCCCeEEEEEecCCChHHHHHhhccCCC--------
Q 042778 208 E---SQR----P-GGLGFLQQKLLSKLLQDGI-VIPDIALSFRQLSRRKVLIVLDDVTCFRQIKSLIGMLRN-------- 270 (311)
Q Consensus 208 ~---s~~----~-~~~~~l~~~ll~~l~~~~~-~~~~~~~l~~~L~~kr~LlVLDdV~~~~~l~~l~~~~~~-------- 270 (311)
. ... . .....++++++.++..... .......++++|+++|+||||||||+.++|+.+.+...|
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEE
Confidence 1 000 0 1134677788888776544 444457789999999999999999999999999765443
Q ss_pred -----------cCCceEEEcCCCChHHHHHHHHHhhcCCCCCCCcHHHhhc
Q 042778 271 -----------CCVKEKYEMKELGDDHALELFSRHAFKQNNPHIGFEELSS 310 (311)
Q Consensus 271 -----------~~~~~~y~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~ 310 (311)
++.+.+|+|+.|++++||+||+++||++..|+++|+++++
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~ 379 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELAS 379 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 3467899999999999999999999998888888998875
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=250.47 Aligned_cols=123 Identities=27% Similarity=0.496 Sum_probs=108.8
Q ss_pred CCCCCCCCcccEEecCccccCCCChHHHHHHHHHhCCCcEEeeC-CCCCCCcchHHHHHHHHhccceeeeeccCcccccc
Q 042778 10 SPSSPRNHKYDVFQSFRGEDNRDNFTGHLYSALSQKGIETFIDD-QLNRGDEISQSLVDAIEASAISLIIFSEAYASSRW 88 (311)
Q Consensus 10 ~s~~~~~~~~dvFis~~g~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~w 88 (311)
+|+++...+|||||||||+|+|++|++||+++|+++||+||+|+ ++++|+.|.+.|.+||++|+++||||||||++|.|
T Consensus 18 ~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~W 97 (187)
T PLN03194 18 PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYF 97 (187)
T ss_pred ccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchh
Confidence 44555668899999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhH------h-H---HHHhH------hHHHHHHHHHHHHHHhhhcCCccCC
Q 042778 89 CLDELVKILTRE------L-E---EMFKE------NSEKLQTWRNALKEAAGLSGFHSQN 132 (311)
Q Consensus 89 cl~El~~i~e~~------~-~---~~~~~------~~~~v~~w~~~l~~~~~~~g~~~~~ 132 (311)
||+||++|++|+ | . ..... ..+++++||+||.+++++.|+.+..
T Consensus 98 CLdEL~~I~e~~~~ViPIFY~VdPsdVr~q~~~~~~~e~v~~Wr~AL~~va~l~G~~~~~ 157 (187)
T PLN03194 98 CLHELALIMESKKRVIPIFCDVKPSQLRVVDNGTCPDEEIRRFNWALEEAKYTVGLTFDS 157 (187)
T ss_pred HHHHHHHHHHcCCEEEEEEecCCHHHhhccccCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence 999999999987 1 1 11111 1178999999999999999987653
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.92 E-value=1.1e-24 Score=222.31 Aligned_cols=156 Identities=26% Similarity=0.360 Sum_probs=134.0
Q ss_pred cchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHh---hccCcCceEEEecCccccCCCCChHHHHHHHHH
Q 042778 148 VGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNK---ISSNFEGSCFLQNVREESQRPGGLGFLQQKLLS 224 (311)
Q Consensus 148 vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~---~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~ 224 (311)
||.+..++++.+.|..++. .++||+||||+||||||+.++|+ +..+|+..+||. +|+ .++...++.+|+.
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk-~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSK-EFTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Ecc-cccHHhHHHHHHH
Confidence 9999999999999986543 99999999999999999999996 678999999999 999 9999999999999
Q ss_pred HHhcCCCC--C---CCH-HHHHHHhCCCeEEEEEecCCChHHHHHhhccCC-----C---------------cCCceEEE
Q 042778 225 KLLQDGIV--I---PDI-ALSFRQLSRRKVLIVLDDVTCFRQIKSLIGMLR-----N---------------CCVKEKYE 278 (311)
Q Consensus 225 ~l~~~~~~--~---~~~-~~l~~~L~~kr~LlVLDdV~~~~~l~~l~~~~~-----~---------------~~~~~~y~ 278 (311)
.++..... . ... ..|.+.|.+||+||||||||+...|+.+..+.+ + +++...++
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 98875552 1 122 889999999999999999999999999964332 2 56678899
Q ss_pred cCCCChHHHHHHHHHhhcCCC-CCCCcHHHhhc
Q 042778 279 MKELGDDHALELFSRHAFKQN-NPHIGFEELSS 310 (311)
Q Consensus 279 v~~L~~~ea~~Lf~~~af~~~-~~~~~~~~l~~ 310 (311)
+++|+.+|||+||++.||... ...+++++++|
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak 346 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAK 346 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHH
Confidence 999999999999999999863 34445777775
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.90 E-value=7.1e-24 Score=192.50 Aligned_cols=145 Identities=29% Similarity=0.422 Sum_probs=113.7
Q ss_pred hhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHh--hccCcCceEEEecCccccCCCCChHHHHHHHHHHHh
Q 042778 150 VESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNK--ISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLL 227 (311)
Q Consensus 150 r~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~--~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~ 227 (311)
||.++++|.+.|....++.++|+|+||||+||||||+.++++ +..+|+.++|+. .+. ......++..|+..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~-~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSK-NPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES--SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----ccc-cccccccccccccccc
Confidence 688999999999876677999999999999999999999998 899999999999 666 7777999999999988
Q ss_pred cCCCCC---CCH----HHHHHHhCCCeEEEEEecCCChHHHHHhhccC-----CC---------------cCCceEEEcC
Q 042778 228 QDGIVI---PDI----ALSFRQLSRRKVLIVLDDVTCFRQIKSLIGML-----RN---------------CCVKEKYEMK 280 (311)
Q Consensus 228 ~~~~~~---~~~----~~l~~~L~~kr~LlVLDdV~~~~~l~~l~~~~-----~~---------------~~~~~~y~v~ 280 (311)
...... .+. ..+++.|.++++||||||||+...|+.+.... ++ ......|+|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 774322 222 88999999999999999999999997774321 11 1125789999
Q ss_pred CCChHHHHHHHHHhhcCCC
Q 042778 281 ELGDDHALELFSRHAFKQN 299 (311)
Q Consensus 281 ~L~~~ea~~Lf~~~af~~~ 299 (311)
+|+.+||++||++.++...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~ 174 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKE 174 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS
T ss_pred ccccccccccccccccccc
Confidence 9999999999999999755
No 5
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.67 E-value=1.6e-17 Score=135.45 Aligned_cols=80 Identities=36% Similarity=0.684 Sum_probs=72.9
Q ss_pred EEecCccccCCCChHHHHHHHHHhC--CCcEEeeC-CCCCCCcchHHHHHHHHhccceeeeeccCcccccchHHHHHHHH
Q 042778 21 VFQSFRGEDNRDNFTGHLYSALSQK--GIETFIDD-QLNRGDEISQSLVDAIEASAISLIIFSEAYASSRWCLDELVKIL 97 (311)
Q Consensus 21 vFis~~g~D~~~~f~~~L~~~L~~~--gi~~f~d~-~~~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wcl~El~~i~ 97 (311)
|||||++.+.+..|+++|..+|++. |+++|+++ |+.+|..+.+++.++|++|+++|+|||++|+.|.||+.||..++
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 7999999544567999999999999 99999998 99999999999999999999999999999999999999999988
Q ss_pred hhH
Q 042778 98 TRE 100 (311)
Q Consensus 98 e~~ 100 (311)
++.
T Consensus 81 ~~~ 83 (141)
T PF01582_consen 81 ERL 83 (141)
T ss_dssp HHH
T ss_pred hhc
Confidence 754
No 6
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.63 E-value=1.2e-15 Score=123.80 Aligned_cols=82 Identities=44% Similarity=0.783 Sum_probs=71.2
Q ss_pred cccEEecCcc-ccCCCChHHHHHHHHHhCCCcEEeeCCCCCCCcchHHHHHHHHhccceeeeeccCcccccchHHHHHHH
Q 042778 18 KYDVFQSFRG-EDNRDNFTGHLYSALSQKGIETFIDDQLNRGDEISQSLVDAIEASAISLIIFSEAYASSRWCLDELVKI 96 (311)
Q Consensus 18 ~~dvFis~~g-~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wcl~El~~i 96 (311)
.|||||||++ ++....|+.+|...|...|+.+|.|+....|... .+|.++|++|++.|+|+||+|..|.||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 4899999999 5666789999999999999999999844333334 3999999999999999999999999999999988
Q ss_pred HhhH
Q 042778 97 LTRE 100 (311)
Q Consensus 97 ~e~~ 100 (311)
+++.
T Consensus 80 ~~~~ 83 (140)
T smart00255 80 LENA 83 (140)
T ss_pred HHHH
Confidence 8753
No 7
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.47 E-value=7.6e-15 Score=112.77 Aligned_cols=74 Identities=32% Similarity=0.583 Sum_probs=65.0
Q ss_pred EEecCccccCCCChHHHHHHHHHhCCCcEEeeCCCCCCCcchHHHHHHHHhccceeeeeccCcccccchHHHHHHH
Q 042778 21 VFQSFRGEDNRDNFTGHLYSALSQKGIETFIDDQLNRGDEISQSLVDAIEASAISLIIFSEAYASSRWCLDELVKI 96 (311)
Q Consensus 21 vFis~~g~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wcl~El~~i 96 (311)
|||||+++|. .|+.+|...|+.+|+++|.|.++.+|+.+...|.++|++|+..|+++||+|..|.||..|+..+
T Consensus 1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a 74 (102)
T PF13676_consen 1 VFISYSSEDR--EFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAA 74 (102)
T ss_dssp EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHH
T ss_pred eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHH
Confidence 8999999994 5999999999999999999988899999999999999999999999999999999999998544
No 8
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.98 E-value=3.4e-09 Score=97.86 Aligned_cols=107 Identities=23% Similarity=0.381 Sum_probs=80.1
Q ss_pred CCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHH-HHHh
Q 042778 165 SKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALS-FRQL 243 (311)
Q Consensus 165 ~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l-~~~L 243 (311)
.+.+..+-+||++|+||||||+.+.......|... +....+..++...+ +.- +.+.
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~---------sAv~~gvkdlr~i~--------------e~a~~~~~ 101 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL---------SAVTSGVKDLREII--------------EEARKNRL 101 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe---------ccccccHHHHHHHH--------------HHHHHHHh
Confidence 34578889999999999999999999887777542 11134555554433 222 3444
Q ss_pred CCCeEEEEEecCC--ChHHHHHhhccCCC---------------------cCCceEEEcCCCChHHHHHHHHHh
Q 042778 244 SRRKVLIVLDDVT--CFRQIKSLIGMLRN---------------------CCVKEKYEMKELGDDHALELFSRH 294 (311)
Q Consensus 244 ~~kr~LlVLDdV~--~~~~l~~l~~~~~~---------------------~~~~~~y~v~~L~~~ea~~Lf~~~ 294 (311)
.+++.+|.+|.|+ +..|.+.|++.... .....+|++++|+.++-.+++.+-
T Consensus 102 ~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 102 LGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred cCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHH
Confidence 5899999999997 67788888764433 456789999999999999999983
No 9
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.94 E-value=2.2e-08 Score=95.06 Aligned_cols=147 Identities=14% Similarity=0.176 Sum_probs=98.9
Q ss_pred CCCccchhhhHHHHHHhhccc--CCCeEEEEEeccCcchhHHHHHHHHHhhccCcC--ceEEEecCccccCCCCChHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAE--SKDVYALGIWGIGGIDRTTIARAIFNKISSNFE--GSCFLQNVREESQRPGGLGFLQ 219 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~--~~~wv~~~~~~s~~~~~~~~l~ 219 (311)
++.++||+.++++|...|... ......+.|+|++|+|||++++.++++...... ..+++. ... ..+...+.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~-~~~~~~~~ 103 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQI-DRTRYAIF 103 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCc-CCCHHHHH
Confidence 678999999999999988543 233556789999999999999999998765442 234444 222 44567888
Q ss_pred HHHHHHHhcCCC-C-C---CCH-HHHHHHhC--CCeEEEEEecCCChH------HHHHhhcc----CCC-----------
Q 042778 220 QKLLSKLLQDGI-V-I---PDI-ALSFRQLS--RRKVLIVLDDVTCFR------QIKSLIGM----LRN----------- 270 (311)
Q Consensus 220 ~~ll~~l~~~~~-~-~---~~~-~~l~~~L~--~kr~LlVLDdV~~~~------~l~~l~~~----~~~----------- 270 (311)
..++.++.+... . . ... ..+.+.+. ++..+||||+++... .+..+... ...
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCc
Confidence 888888876322 1 1 112 55555554 456899999998643 34443211 110
Q ss_pred ------------cCCceEEEcCCCChHHHHHHHHHhh
Q 042778 271 ------------CCVKEKYEMKELGDDHALELFSRHA 295 (311)
Q Consensus 271 ------------~~~~~~y~v~~L~~~ea~~Lf~~~a 295 (311)
.-....+.+++++.++..+++..++
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~ 220 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV 220 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence 0012456899999999999998775
No 10
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.88 E-value=5.6e-08 Score=91.36 Aligned_cols=147 Identities=14% Similarity=0.268 Sum_probs=97.2
Q ss_pred CCCccchhhhHHHHHHhhccc--CCCeEEEEEeccCcchhHHHHHHHHHhhccCcC------ceEEEecCccccCCCCCh
Q 042778 144 KNQLVGVESRVEEIESLLGAE--SKDVYALGIWGIGGIDRTTIARAIFNKISSNFE------GSCFLQNVREESQRPGGL 215 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~------~~~wv~~~~~~s~~~~~~ 215 (311)
++.++||+.++++|...|... ......+.|+|++|+|||++++.+++++....+ ..+++. ... ..+.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~-~~~~ 88 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQI-LDTL 88 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCC-CCCH
Confidence 678999999999999988642 233567899999999999999999997643322 234554 222 3456
Q ss_pred HHHHHHHHHHHhc--CCC---CCC--CH-HHHHHHhC--CCeEEEEEecCCCh-----HHHHHhhcc-----CC-C----
Q 042778 216 GFLQQKLLSKLLQ--DGI---VIP--DI-ALSFRQLS--RRKVLIVLDDVTCF-----RQIKSLIGM-----LR-N---- 270 (311)
Q Consensus 216 ~~l~~~ll~~l~~--~~~---~~~--~~-~~l~~~L~--~kr~LlVLDdV~~~-----~~l~~l~~~-----~~-~---- 270 (311)
..+...|+.++.. ... ... +. ..+.+.+. +++++||||+++.. +.+..+... .. .
T Consensus 89 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 89 YQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEE
Confidence 7788888888852 111 111 11 44555553 56889999999865 123333211 00 0
Q ss_pred -------------------cCCceEEEcCCCChHHHHHHHHHhh
Q 042778 271 -------------------CCVKEKYEMKELGDDHALELFSRHA 295 (311)
Q Consensus 271 -------------------~~~~~~y~v~~L~~~ea~~Lf~~~a 295 (311)
.-....+.+++++.+|-.+++..++
T Consensus 169 I~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~ 212 (365)
T TIGR02928 169 IGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRA 212 (365)
T ss_pred EEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHH
Confidence 0012457899999999999999875
No 11
>PF05729 NACHT: NACHT domain
Probab=98.81 E-value=4.1e-08 Score=81.09 Aligned_cols=122 Identities=16% Similarity=0.229 Sum_probs=71.3
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCc------CceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHH-
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNF------EGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFR- 241 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F------~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~- 241 (311)
|++.|.|.+|+||||+++.++.++.... ...+|+. .+.... ......+...|..+......... ..+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~--~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISD-SNNSRSLADLLFDQLPESIAPIE--ELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhh-ccccchHHHHHHHhhccchhhhH--HHHHHH
Confidence 5789999999999999999998754443 3344443 333332 22222344433333322211111 11222
Q ss_pred HhCCCeEEEEEecCCChHH-------------HHHhhcc--CCC------------------cCCceEEEcCCCChHHHH
Q 042778 242 QLSRRKVLIVLDDVTCFRQ-------------IKSLIGM--LRN------------------CCVKEKYEMKELGDDHAL 288 (311)
Q Consensus 242 ~L~~kr~LlVLDdV~~~~~-------------l~~l~~~--~~~------------------~~~~~~y~v~~L~~~ea~ 288 (311)
....+++|||||++++... +..+... +.. ......++|++|++++..
T Consensus 77 ~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (166)
T PF05729_consen 77 LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIK 156 (166)
T ss_pred HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHH
Confidence 2257899999999985332 2233322 111 234468999999999999
Q ss_pred HHHHHh
Q 042778 289 ELFSRH 294 (311)
Q Consensus 289 ~Lf~~~ 294 (311)
+++.++
T Consensus 157 ~~~~~~ 162 (166)
T PF05729_consen 157 QYLRKY 162 (166)
T ss_pred HHHHHH
Confidence 988554
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.68 E-value=3.7e-07 Score=82.03 Aligned_cols=122 Identities=11% Similarity=0.077 Sum_probs=75.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCC--H-HHHHHH--
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPD--I-ALSFRQ-- 242 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~--~-~~l~~~-- 242 (311)
..++.|+|++|+|||||++.+++.....=-..+|+. .. ..+...++..++..++........ . ..+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~-~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NT-RVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CC-CCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 558899999999999999999998653211223333 12 345667777777766543222111 1 333332
Q ss_pred ---hCCCeEEEEEecCCChH--HHHHhh---ccC---CC-------------------------cCCceEEEcCCCChHH
Q 042778 243 ---LSRRKVLIVLDDVTCFR--QIKSLI---GML---RN-------------------------CCVKEKYEMKELGDDH 286 (311)
Q Consensus 243 ---L~~kr~LlVLDdV~~~~--~l~~l~---~~~---~~-------------------------~~~~~~y~v~~L~~~e 286 (311)
..+++++||+||++... .++.+. ... .. ......+++++|+.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 26788999999998643 444432 100 00 0123457899999999
Q ss_pred HHHHHHHhh
Q 042778 287 ALELFSRHA 295 (311)
Q Consensus 287 a~~Lf~~~a 295 (311)
..+++...+
T Consensus 197 ~~~~l~~~l 205 (269)
T TIGR03015 197 TREYIEHRL 205 (269)
T ss_pred HHHHHHHHH
Confidence 999888765
No 13
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.62 E-value=6.6e-08 Score=81.54 Aligned_cols=50 Identities=30% Similarity=0.502 Sum_probs=35.4
Q ss_pred CccchhhhHHHHHHhhcc-cCCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 146 QLVGVESRVEEIESLLGA-ESKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
.||||+.+++++...|.. .....+.+.|+|.+|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999952 33447999999999999999999999987666
No 14
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.59 E-value=1.2e-07 Score=82.53 Aligned_cols=55 Identities=16% Similarity=0.358 Sum_probs=40.3
Q ss_pred ccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 147 LVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 147 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
|+||+.++++|.+++..+ ..+.+.|+|..|+|||+|++.+.+.....-...+|+.
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~ 55 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYID 55 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEe
Confidence 689999999999988753 3567899999999999999999998744322344444
No 15
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.58 E-value=4e-07 Score=87.20 Aligned_cols=128 Identities=21% Similarity=0.396 Sum_probs=79.9
Q ss_pred CCCccchhhhHHH---HHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHH
Q 042778 144 KNQLVGVESRVEE---IESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQ 220 (311)
Q Consensus 144 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~ 220 (311)
.+++||.+..+.. +..++.. +....+.|+|++|+||||||+.+++.....|.. +.. . ..+...+ +
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a---~---~~~~~~i-r 78 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSA---V---TSGVKDL-R 78 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eec---c---cccHHHH-H
Confidence 3468888877655 6666653 346678889999999999999999987655432 110 0 1122222 1
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhCCCeEEEEEecCCC--hHHHHHhhccCCC---------------------cCCceEE
Q 042778 221 KLLSKLLQDGIVIPDIALSFRQLSRRKVLIVLDDVTC--FRQIKSLIGMLRN---------------------CCVKEKY 277 (311)
Q Consensus 221 ~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~~--~~~l~~l~~~~~~---------------------~~~~~~y 277 (311)
.++.... .....+++.+|+||+++. ..+.+.|...... .....++
T Consensus 79 ~ii~~~~------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~~~~ 146 (413)
T PRK13342 79 EVIEEAR------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVF 146 (413)
T ss_pred HHHHHHH------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccceee
Confidence 2222211 011235778999999985 3455555321110 2233678
Q ss_pred EcCCCChHHHHHHHHHhh
Q 042778 278 EMKELGDDHALELFSRHA 295 (311)
Q Consensus 278 ~v~~L~~~ea~~Lf~~~a 295 (311)
.+++|+.++..+++.+.+
T Consensus 147 ~~~~ls~e~i~~lL~~~l 164 (413)
T PRK13342 147 ELKPLSEEDIEQLLKRAL 164 (413)
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 999999999999998854
No 16
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.54 E-value=2.9e-07 Score=84.46 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=87.0
Q ss_pred CCccchhhhHHHHHHhhccc---CCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHH
Q 042778 145 NQLVGVESRVEEIESLLGAE---SKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQK 221 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ 221 (311)
.++||++..+++|..++... ......+.++|++|+|||+||+.+++.....+.. +. .... ..... ...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~---~~-~~~~----~~~~~-l~~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKI---TS-GPAL----EKPGD-LAA 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEE---ec-cchh----cCchh-HHH
Confidence 46899999999998888632 2235668899999999999999999987654321 11 1001 11111 122
Q ss_pred HHHHHhcCCC----CCCCH-----HHHHHHhCCCeEEEEEecCCChHHHHHhhccCCC---------------cCCceEE
Q 042778 222 LLSKLLQDGI----VIPDI-----ALSFRQLSRRKVLIVLDDVTCFRQIKSLIGMLRN---------------CCVKEKY 277 (311)
Q Consensus 222 ll~~l~~~~~----~~~~~-----~~l~~~L~~kr~LlVLDdV~~~~~l~~l~~~~~~---------------~~~~~~y 277 (311)
++..+..... ++..+ +.+...+.+.+..+|+|+..+..++....+.... ......+
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~ 154 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIIL 154 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEE
Confidence 2233322211 11111 4555666667777888877666555433221110 1124568
Q ss_pred EcCCCChHHHHHHHHHhhc
Q 042778 278 EMKELGDDHALELFSRHAF 296 (311)
Q Consensus 278 ~v~~L~~~ea~~Lf~~~af 296 (311)
++++++.++..+++.+.+-
T Consensus 155 ~l~~l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 155 RLEFYTVEELAEIVSRSAG 173 (305)
T ss_pred EeCCCCHHHHHHHHHHHHH
Confidence 9999999999999998764
No 17
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.52 E-value=6.2e-07 Score=82.11 Aligned_cols=112 Identities=16% Similarity=0.284 Sum_probs=76.8
Q ss_pred CCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhC
Q 042778 165 SKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLS 244 (311)
Q Consensus 165 ~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~ 244 (311)
.+.+..+.+||.+|+||||||+.+.+.-+.+- ..||. .|....+..+ .+.++.+... ...|.
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~d-vR~ife~aq~-----------~~~l~ 220 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTND-VRDIFEQAQN-----------EKSLT 220 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchHH-HHHHHHHHHH-----------HHhhh
Confidence 45688899999999999999999998755442 44565 3331222222 2233333221 13356
Q ss_pred CCeEEEEEecCC--ChHHHHHhhccCCC---------------------cCCceEEEcCCCChHHHHHHHHHh
Q 042778 245 RRKVLIVLDDVT--CFRQIKSLIGMLRN---------------------CCVKEKYEMKELGDDHALELFSRH 294 (311)
Q Consensus 245 ~kr~LlVLDdV~--~~~~l~~l~~~~~~---------------------~~~~~~y~v~~L~~~ea~~Lf~~~ 294 (311)
.+|.+|.+|.|. +..|.+.++|.... .....++.+++|+.++-..++.+-
T Consensus 221 krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 789999999997 56777777654333 455678999999999999988873
No 18
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.50 E-value=3.5e-07 Score=81.42 Aligned_cols=88 Identities=19% Similarity=0.157 Sum_probs=60.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc-CcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCH----------
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS-NFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDI---------- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~-~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~---------- 236 (311)
-..++|.|.+|+|||||++.+|+.+.. +|+..+|+..+++- ..++.++++.+...+.....+....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998543 79999999843321 3688898888833332221111110
Q ss_pred HHHHHH-hCCCeEEEEEecCCCh
Q 042778 237 ALSFRQ-LSRRKVLIVLDDVTCF 258 (311)
Q Consensus 237 ~~l~~~-L~~kr~LlVLDdV~~~ 258 (311)
...+.+ -.+++++|++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 222222 3479999999999754
No 19
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.50 E-value=2.8e-07 Score=86.15 Aligned_cols=90 Identities=18% Similarity=0.154 Sum_probs=60.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc-CcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCH----------
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS-NFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDI---------- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~-~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~---------- 236 (311)
-...+|+|.+|+||||||+.+|+.+.. +|+..+|+..+++- ...+.++++.++..+.....+....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER---~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc---hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 456889999999999999999998654 79999999944331 2377888888763322111111100
Q ss_pred HHHHHH-hCCCeEEEEEecCCChHH
Q 042778 237 ALSFRQ-LSRRKVLIVLDDVTCFRQ 260 (311)
Q Consensus 237 ~~l~~~-L~~kr~LlVLDdV~~~~~ 260 (311)
+..+.+ -.++++||++|++.....
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHHHH
Confidence 222222 367999999999975443
No 20
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.45 E-value=7.4e-07 Score=77.27 Aligned_cols=54 Identities=26% Similarity=0.464 Sum_probs=39.0
Q ss_pred CCCccchhhhHHHHHHhhcc---cCCCeEEEEEeccCcchhHHHHHHHHHhhccCcC
Q 042778 144 KNQLVGVESRVEEIESLLGA---ESKDVYALGIWGIGGIDRTTIARAIFNKISSNFE 197 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~ 197 (311)
-+++||.+..+..+.-++.. ..+....+-+||++|+||||||..+++.....|.
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 57899999988887766643 2234788999999999999999999999887774
No 21
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.45 E-value=4.1e-07 Score=72.42 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=59.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccC-----cCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCH----HH
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSN-----FEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDI----AL 238 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~-----F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~----~~ 238 (311)
-+.+.|+|.+|+|||++++.+.+..... -...+|+. ... ..+...+...++..+........+. +.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPS-SRTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHH-HSSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCC-CCCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 4678999999999999999999986542 23456777 555 5578999999999988665541222 56
Q ss_pred HHHHhCCC-eEEEEEecCCCh
Q 042778 239 SFRQLSRR-KVLIVLDDVTCF 258 (311)
Q Consensus 239 l~~~L~~k-r~LlVLDdV~~~ 258 (311)
+.+.+... ..+||+||++..
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHH
T ss_pred HHHHHHhcCCeEEEEeChHhc
Confidence 66666554 459999999765
No 22
>PTZ00202 tuzin; Provisional
Probab=98.39 E-value=2.3e-06 Score=80.87 Aligned_cols=138 Identities=12% Similarity=0.090 Sum_probs=89.5
Q ss_pred CCCccchhhhHHHHHHhhcccCC-CeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESK-DVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKL 222 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~-~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~l 222 (311)
..+|+||+.++..|...|...+. ..+++.|.|++|+|||||++.+..... ..+++.| ..+..+++..+
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vN-------prg~eElLr~L 329 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVD-------VRGTEDTLRSV 329 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEEC-------CCCHHHHHHHH
Confidence 67899999999999999974333 367999999999999999999997654 2244432 33678999999
Q ss_pred HHHHhcCCC-CCCCH-HHHHHHh-----C-CCeEEEEEecCCChHHHHHhhc-----cCCC-------------------
Q 042778 223 LSKLLQDGI-VIPDI-ALSFRQL-----S-RRKVLIVLDDVTCFRQIKSLIG-----MLRN------------------- 270 (311)
Q Consensus 223 l~~l~~~~~-~~~~~-~~l~~~L-----~-~kr~LlVLDdV~~~~~l~~l~~-----~~~~------------------- 270 (311)
+..++.+.. ...++ ..|.+.| . +++.+||+-= .+-+.+....+ .++.
T Consensus 330 L~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~ 408 (550)
T PTZ00202 330 VKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANT 408 (550)
T ss_pred HHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcc
Confidence 999986433 22233 3333332 3 5777777642 11111111100 0111
Q ss_pred -cCCceEEEcCCCChHHHHHHHHH
Q 042778 271 -CCVKEKYEMKELGDDHALELFSR 293 (311)
Q Consensus 271 -~~~~~~y~v~~L~~~ea~~Lf~~ 293 (311)
.+.-.-|-++.++.++|.+.-..
T Consensus 409 ~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 409 LLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred cCccceeEecCCCCHHHHHHHHhh
Confidence 34456789999999998876544
No 23
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.37 E-value=2.6e-06 Score=86.50 Aligned_cols=126 Identities=23% Similarity=0.375 Sum_probs=77.9
Q ss_pred CCccchhhhHH---HHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHH
Q 042778 145 NQLVGVESRVE---EIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQK 221 (311)
Q Consensus 145 ~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ 221 (311)
++++|.+..+. .+...+.. +....+.|+|++|+||||||+.+++.....|.. +..+ ..++..+ +.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~---lna~------~~~i~di-r~ 95 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFSS---LNAV------LAGVKDL-RA 95 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCccee---ehhh------hhhhHHH-HH
Confidence 46789887764 35455542 346677899999999999999999987665522 2100 1112221 11
Q ss_pred HHHHHhcCCCCCCCHHHHHHHh--CCCeEEEEEecCC--ChHHHHHhhccCCC---------------------cCCceE
Q 042778 222 LLSKLLQDGIVIPDIALSFRQL--SRRKVLIVLDDVT--CFRQIKSLIGMLRN---------------------CCVKEK 276 (311)
Q Consensus 222 ll~~l~~~~~~~~~~~~l~~~L--~~kr~LlVLDdV~--~~~~l~~l~~~~~~---------------------~~~~~~ 276 (311)
++. .....+ .+++.+||||||+ +..+.+.|.+.... .....+
T Consensus 96 ~i~-------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~v 162 (725)
T PRK13341 96 EVD-------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRL 162 (725)
T ss_pred HHH-------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhccccc
Confidence 111 111111 2467799999997 45556555431111 122467
Q ss_pred EEcCCCChHHHHHHHHHhh
Q 042778 277 YEMKELGDDHALELFSRHA 295 (311)
Q Consensus 277 y~v~~L~~~ea~~Lf~~~a 295 (311)
+.+++|+.++...++.+.+
T Consensus 163 ~~l~pLs~edi~~IL~~~l 181 (725)
T PRK13341 163 FRLKSLSDEDLHQLLKRAL 181 (725)
T ss_pred eecCCCCHHHHHHHHHHHH
Confidence 9999999999999998765
No 24
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.37 E-value=6.5e-07 Score=83.14 Aligned_cols=145 Identities=15% Similarity=0.207 Sum_probs=85.1
Q ss_pred CCCccchhhhHHHHHHhhccc---CCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAE---SKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQ 220 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~ 220 (311)
..+++|++..++.+..++... ......+.|+|++|+||||||+.+++.....+. ++. ...... .. -..
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~~~-~~----~l~ 94 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPALEK-PG----DLA 94 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccccC-hH----HHH
Confidence 467999999999998877531 233667889999999999999999998765432 111 110111 11 122
Q ss_pred HHHHHHhcCCC----CCCC----H-HHHHHHhCCCeEEEEEecCCChHHHHHhhccCC---------C------cCCceE
Q 042778 221 KLLSKLLQDGI----VIPD----I-ALSFRQLSRRKVLIVLDDVTCFRQIKSLIGMLR---------N------CCVKEK 276 (311)
Q Consensus 221 ~ll~~l~~~~~----~~~~----~-~~l~~~L~~kr~LlVLDdV~~~~~l~~l~~~~~---------~------~~~~~~ 276 (311)
.++..+..... ++.. . +.+...+.+.+..+|+|+..+..++....+... . ......
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~ 174 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIV 174 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCee
Confidence 33333322111 1111 1 444555556666677776555443321111100 0 112356
Q ss_pred EEcCCCChHHHHHHHHHhhcC
Q 042778 277 YEMKELGDDHALELFSRHAFK 297 (311)
Q Consensus 277 y~v~~L~~~ea~~Lf~~~af~ 297 (311)
+++++++.++..+++.+.+-.
T Consensus 175 ~~l~~~~~~e~~~il~~~~~~ 195 (328)
T PRK00080 175 QRLEFYTVEELEKIVKRSARI 195 (328)
T ss_pred eecCCCCHHHHHHHHHHHHHH
Confidence 899999999999999988654
No 25
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.34 E-value=3.9e-06 Score=79.08 Aligned_cols=147 Identities=17% Similarity=0.270 Sum_probs=86.0
Q ss_pred CCCccchhhhHHHHHHhhccc--C---------CCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCC
Q 042778 144 KNQLVGVESRVEEIESLLGAE--S---------KDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRP 212 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~--~---------~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~ 212 (311)
..++.|++..+++|.+.+... . ...+-+.|+|++|+|||+||+++++.....|-.. ..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v---------~~-- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV---------VG-- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec---------ch--
Confidence 457889999999998876421 1 1245689999999999999999999876554221 11
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCHHHHHHH-hCCCeEEEEEecCCChH----------------HHHHhh----cc--CC
Q 042778 213 GGLGFLQQKLLSKLLQDGIVIPDIALSFRQ-LSRRKVLIVLDDVTCFR----------------QIKSLI----GM--LR 269 (311)
Q Consensus 213 ~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~-L~~kr~LlVLDdV~~~~----------------~l~~l~----~~--~~ 269 (311)
..+.... .+... ..+..+.+. -.....+|+|||++... .+..+. +. .+
T Consensus 190 ---~~l~~~~----~g~~~--~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 190 ---SELVRKY----IGEGA--RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred ---HHHHHHh----hhHHH--HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 0111110 00000 000111111 12356799999987431 122221 10 00
Q ss_pred C--------------------cCCceEEEcCCCChHHHHHHHHHhhcCCCCCC-CcHHHhhc
Q 042778 270 N--------------------CCVKEKYEMKELGDDHALELFSRHAFKQNNPH-IGFEELSS 310 (311)
Q Consensus 270 ~--------------------~~~~~~y~v~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~ 310 (311)
. ...+..++++..+.++..++|+.++.+...+. .++.+|++
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~ 322 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAK 322 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHH
Confidence 1 12356889999999999999999987654332 45666653
No 26
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.33 E-value=4.5e-06 Score=66.60 Aligned_cols=54 Identities=30% Similarity=0.350 Sum_probs=40.2
Q ss_pred cchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 148 VGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 148 vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
+|++..+..+...+... ..+.+.|+|.+|+|||||++.+++.....-...+++.
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 47778888888877642 3567889999999999999999998753323344444
No 27
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.31 E-value=6.9e-06 Score=83.37 Aligned_cols=147 Identities=13% Similarity=0.168 Sum_probs=90.7
Q ss_pred CCCccchhhhHHHHHHhhcc---cCCCeEEEEEeccCcchhHHHHHHHHHhhcc-----CcCc--eEEEecCccccCCCC
Q 042778 144 KNQLVGVESRVEEIESLLGA---ESKDVYALGIWGIGGIDRTTIARAIFNKISS-----NFEG--SCFLQNVREESQRPG 213 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~-----~F~~--~~wv~~~~~~s~~~~ 213 (311)
++.++||+.++++|...|.. ++....++-|+|++|.|||++++.|.+++.. .... +++|.+. . -.
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm----~-Ls 828 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM----N-VV 828 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC----c-cC
Confidence 78899999999999998864 2222457789999999999999999887532 1221 3444411 1 24
Q ss_pred ChHHHHHHHHHHHhcCCC--CCCCH---HHHHHHhC---CCeEEEEEecCCChH-----HHHHhhcc---CCC-------
Q 042778 214 GLGFLQQKLLSKLLQDGI--VIPDI---ALSFRQLS---RRKVLIVLDDVTCFR-----QIKSLIGM---LRN------- 270 (311)
Q Consensus 214 ~~~~l~~~ll~~l~~~~~--~~~~~---~~l~~~L~---~kr~LlVLDdV~~~~-----~l~~l~~~---~~~------- 270 (311)
....+...|..++.+..+ ..... ..+...+. ....+||||+|+... .|-.|... ...
T Consensus 829 tp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGI 908 (1164)
T PTZ00112 829 HPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAI 908 (1164)
T ss_pred CHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEe
Confidence 566777778777755443 22222 33444332 224599999998532 12222110 000
Q ss_pred -----------------cCCceEEEcCCCChHHHHHHHHHhhc
Q 042778 271 -----------------CCVKEKYEMKELGDDHALELFSRHAF 296 (311)
Q Consensus 271 -----------------~~~~~~y~v~~L~~~ea~~Lf~~~af 296 (311)
++ ...+..++++.++-.+++..++-
T Consensus 909 SNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 909 SNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred cCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHH
Confidence 11 12245688888888888888764
No 28
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.30 E-value=2.4e-06 Score=80.28 Aligned_cols=89 Identities=18% Similarity=0.158 Sum_probs=62.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccC-cCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCH----------
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSN-FEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDI---------- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~-F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~---------- 236 (311)
-..++|+|.+|.|||||++.+++.+..+ |+..+|+..+++- ...+.++++.++..+.....+....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 4578999999999999999999986555 9999999944331 4688899998865543322211111
Q ss_pred HHHHHH-hCCCeEEEEEecCCChH
Q 042778 237 ALSFRQ-LSRRKVLIVLDDVTCFR 259 (311)
Q Consensus 237 ~~l~~~-L~~kr~LlVLDdV~~~~ 259 (311)
+..+.. -.+++++|++|++....
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHHH
Confidence 222222 35799999999997543
No 29
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=5.4e-06 Score=77.89 Aligned_cols=109 Identities=17% Similarity=0.269 Sum_probs=79.2
Q ss_pred CCCccchhhhHHHHHHhhccc--CCCeEEEEEeccCcchhHHHHHHHHHhhccCcCc--eEEEecCccccCCCCChHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAE--SKDVYALGIWGIGGIDRTTIARAIFNKISSNFEG--SCFLQNVREESQRPGGLGFLQ 219 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~--~~wv~~~~~~s~~~~~~~~l~ 219 (311)
++.+.+|+.+++++...|..- .+...-+.|+|..|.|||+.++.+.+++...... ++.|. ... ......+.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~-~~t~~~i~ 90 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLE-LRTPYQVL 90 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eee-CCCHHHHH
Confidence 566999999999999888642 2223448999999999999999999987665322 45565 222 56788889
Q ss_pred HHHHHHHhcCCC-CCCCH---HHHHHHhC--CCeEEEEEecCCC
Q 042778 220 QKLLSKLLQDGI-VIPDI---ALSFRQLS--RRKVLIVLDDVTC 257 (311)
Q Consensus 220 ~~ll~~l~~~~~-~~~~~---~~l~~~L~--~kr~LlVLDdV~~ 257 (311)
.+|+.++..... ..... +.+.+.+. ++.++||||+++.
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~ 134 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDA 134 (366)
T ss_pred HHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhh
Confidence 999998863333 22222 66666665 4889999999975
No 30
>PRK06893 DNA replication initiation factor; Validated
Probab=98.25 E-value=7.9e-06 Score=72.00 Aligned_cols=106 Identities=18% Similarity=0.335 Sum_probs=65.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLSRRK 247 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 247 (311)
.+.+.|||..|+|||+|++++++....+...+.|+. ... .......++ +.+. +.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~----~~~----~~~~~~~~~-----------------~~~~-~~ 92 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP----LSK----SQYFSPAVL-----------------ENLE-QQ 92 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee----HHH----hhhhhHHHH-----------------hhcc-cC
Confidence 467899999999999999999998655545556776 211 001111111 1111 22
Q ss_pred EEEEEecCCCh---HHHH----H----hhccCC-------------C----------cCCceEEEcCCCChHHHHHHHHH
Q 042778 248 VLIVLDDVTCF---RQIK----S----LIGMLR-------------N----------CCVKEKYEMKELGDDHALELFSR 293 (311)
Q Consensus 248 ~LlVLDdV~~~---~~l~----~----l~~~~~-------------~----------~~~~~~y~v~~L~~~ea~~Lf~~ 293 (311)
-+|||||++.. .+|+ . +..... | ...+.++++++++.++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 37888888752 2222 1 110000 0 23456899999999999999999
Q ss_pred hhcCCC
Q 042778 294 HAFKQN 299 (311)
Q Consensus 294 ~af~~~ 299 (311)
+++...
T Consensus 173 ~a~~~~ 178 (229)
T PRK06893 173 NAYQRG 178 (229)
T ss_pred HHHHcC
Confidence 998543
No 31
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.25 E-value=1.9e-06 Score=80.97 Aligned_cols=70 Identities=23% Similarity=0.387 Sum_probs=60.4
Q ss_pred CCCCcccEEecCccccCCCChHHHHHHHHHhCCCcEEeeC-CCCCCCcchHHHHHHHHhccceeeeeccCccc
Q 042778 14 PRNHKYDVFQSFRGEDNRDNFTGHLYSALSQKGIETFIDD-QLNRGDEISQSLVDAIEASAISLIIFSEAYAS 85 (311)
Q Consensus 14 ~~~~~~dvFis~~g~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~ 85 (311)
+.....|||||||..- ....++-|.-.|+-+|++||+|- .+..|. +.+.+.+.|..++.+|.|++||-.+
T Consensus 608 ~~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLD 678 (832)
T KOG3678|consen 608 MLSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLD 678 (832)
T ss_pred cccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHH
Confidence 3456789999999874 45699999999999999999998 888885 7789999999999999999999543
No 32
>PF13173 AAA_14: AAA domain
Probab=98.21 E-value=7.7e-06 Score=65.25 Aligned_cols=77 Identities=10% Similarity=0.108 Sum_probs=46.9
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCeE
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLSRRKV 248 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~ 248 (311)
+++.|.|+.|+|||||++.++++.. .-...+++. ... .......... -.+.+.+....++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~----~~~----~~~~~~~~~~----------~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN----FDD----PRDRRLADPD----------LLEYFLELIKPGKK 63 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec----cCC----HHHHHHhhhh----------hHHHHHHhhccCCc
Confidence 5889999999999999999998765 333445554 111 1111000000 00233333445788
Q ss_pred EEEEecCCChHHHHHh
Q 042778 249 LIVLDDVTCFRQIKSL 264 (311)
Q Consensus 249 LlVLDdV~~~~~l~~l 264 (311)
+|+||+|.....|...
T Consensus 64 ~i~iDEiq~~~~~~~~ 79 (128)
T PF13173_consen 64 YIFIDEIQYLPDWEDA 79 (128)
T ss_pred EEEEehhhhhccHHHH
Confidence 9999999877666554
No 33
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.10 E-value=4.5e-05 Score=72.52 Aligned_cols=51 Identities=16% Similarity=0.337 Sum_probs=39.8
Q ss_pred CCccchhhhHHHHHHhhccc-----------CCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 145 NQLVGVESRVEEIESLLGAE-----------SKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
+++.|++..+++|.+.+... -...+-|.++|.+|+|||+||++++++....
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence 45779999999998866321 1235668999999999999999999986544
No 34
>PRK08727 hypothetical protein; Validated
Probab=98.09 E-value=3e-05 Score=68.50 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=28.0
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
..+.|+|..|+|||.|++++++....+.....|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 45999999999999999999998655544456665
No 35
>PRK04195 replication factor C large subunit; Provisional
Probab=98.09 E-value=8e-06 Score=79.81 Aligned_cols=134 Identities=21% Similarity=0.292 Sum_probs=81.5
Q ss_pred CCccchhhhHHHHHHhhcccC--CCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHH
Q 042778 145 NQLVGVESRVEEIESLLGAES--KDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKL 222 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~--~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~l 222 (311)
.+++|.+..+.++..++.... ...+.+.|+|++|+||||+|+++++++. |+. +-+. .+. ..... ....+
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln----asd-~r~~~-~i~~~ 84 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN----ASD-QRTAD-VIERV 84 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc----ccc-cccHH-HHHHH
Confidence 468999999999999986422 2267899999999999999999999874 222 1122 122 22222 22222
Q ss_pred HHHHhcCCCCCCCHHHHHHHhCCCeEEEEEecCCChH------HHHHhh---ccCCC-----------------cCCceE
Q 042778 223 LSKLLQDGIVIPDIALSFRQLSRRKVLIVLDDVTCFR------QIKSLI---GMLRN-----------------CCVKEK 276 (311)
Q Consensus 223 l~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~~~~------~l~~l~---~~~~~-----------------~~~~~~ 276 (311)
+....... .....++-+||||+++... .+..|. ..... ......
T Consensus 85 i~~~~~~~----------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr~~~ 154 (482)
T PRK04195 85 AGEAATSG----------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNACLM 154 (482)
T ss_pred HHHhhccC----------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhccceE
Confidence 22221110 1111367799999998642 233332 11111 123466
Q ss_pred EEcCCCChHHHHHHHHHhhcC
Q 042778 277 YEMKELGDDHALELFSRHAFK 297 (311)
Q Consensus 277 y~v~~L~~~ea~~Lf~~~af~ 297 (311)
+++++++.++....+.+.+..
T Consensus 155 I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 155 IEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred EEecCCCHHHHHHHHHHHHHH
Confidence 788999999988888776644
No 36
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.09 E-value=2.3e-05 Score=72.44 Aligned_cols=111 Identities=22% Similarity=0.351 Sum_probs=79.9
Q ss_pred CCCccchhhhHHHHHHhhcccCCC-eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKD-VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKL 222 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~-~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~l 222 (311)
.+++.+|+.++..+..++...+.. ..+|-|+|-.|.|||.+.+.+++.... ..+|++ .-+ .+....+..+|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n----~~e-cft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLN----CVE-CFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeee----hHH-hccHHHHHHHH
Confidence 457889999999999999865554 556699999999999999999998733 346887 444 78899999999
Q ss_pred HHHHhcCCC---CCC----CH----HHHHH--HhC--CCeEEEEEecCCChHHHH
Q 042778 223 LSKLLQDGI---VIP----DI----ALSFR--QLS--RRKVLIVLDDVTCFRQIK 262 (311)
Q Consensus 223 l~~l~~~~~---~~~----~~----~~l~~--~L~--~kr~LlVLDdV~~~~~l~ 262 (311)
+.+.+..+. ... ++ ..+.+ -.. ++.++||||+++...+.+
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~ 131 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMD 131 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccc
Confidence 999852222 111 11 22222 122 468999999998655443
No 37
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.07 E-value=2.4e-05 Score=68.28 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=37.3
Q ss_pred hhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 150 VESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 150 r~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
.+..++.+..++.. .....+.|+|..|+|||+||+.++++........+++.
T Consensus 22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~ 73 (226)
T TIGR03420 22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP 73 (226)
T ss_pred cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Confidence 34466666666542 33668899999999999999999998654444445555
No 38
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=6e-05 Score=77.27 Aligned_cols=136 Identities=17% Similarity=0.236 Sum_probs=80.8
Q ss_pred CCCccchhhhHHHHHHhhcccCCC-eEEEEEeccCcchhHHHHHHHHHhhccCc--Cc-eEEEec------------Ccc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKD-VYALGIWGIGGIDRTTIARAIFNKISSNF--EG-SCFLQN------------VRE 207 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~-~~vi~I~GmgGiGKTtLA~~v~~~~~~~F--~~-~~wv~~------------~~~ 207 (311)
..++||.+..+..|.+.+..+ . ...+.++|..|+||||+|+.+++.+...- .. -|-.|+ +-+
T Consensus 15 FddIIGQe~Iv~~LknaI~~~--rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQ--RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 357899999999998888643 3 44568999999999999999999865431 10 011110 000
Q ss_pred --ccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCeEEEEEecCCC--hHHHHHhhccC----CC---------
Q 042778 208 --ESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLSRRKVLIVLDDVTC--FRQIKSLIGML----RN--------- 270 (311)
Q Consensus 208 --~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~~--~~~l~~l~~~~----~~--------- 270 (311)
... ..++..+ +.|+..+. ..-..+++-++|||+++. .+.++.|+... ..
T Consensus 93 idAas-~~kVDdI-ReLie~v~------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 93 VDAAS-RTKVDDT-RELLDNVQ------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred ecccc-ccCHHHH-HHHHHHHH------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 000 0111111 22222111 111235677999999985 45566654211 10
Q ss_pred --------cCCceEEEcCCCChHHHHHHHHHhh
Q 042778 271 --------CCVKEKYEMKELGDDHALELFSRHA 295 (311)
Q Consensus 271 --------~~~~~~y~v~~L~~~ea~~Lf~~~a 295 (311)
......|++++|+.++..+.+.+.+
T Consensus 159 ~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il 191 (944)
T PRK14949 159 PQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHIL 191 (944)
T ss_pred chhchHHHHHhheEEeCCCCCHHHHHHHHHHHH
Confidence 2335789999999999998887644
No 39
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.04 E-value=8.9e-05 Score=77.74 Aligned_cols=138 Identities=14% Similarity=0.157 Sum_probs=83.6
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLL 223 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll 223 (311)
..++|-|+...+ .|.. ....+++.|.|++|.||||++..+.++. +.++|+. ....+.+...+...|+
T Consensus 13 ~~~~~~R~rl~~----~l~~-~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~----l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 13 LHNTVVRERLLA----KLSG-ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS----LDESDNQPERFASYLI 79 (903)
T ss_pred ccccCcchHHHH----HHhc-ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe----cCcccCCHHHHHHHHH
Confidence 456666664444 3432 2358899999999999999999988643 3688997 4331456666767777
Q ss_pred HHHhcCCC-------------CCCCH----HHHHHHhC--CCeEEEEEecCCCh------HHHHHhhcc-CCC-------
Q 042778 224 SKLLQDGI-------------VIPDI----ALSFRQLS--RRKVLIVLDDVTCF------RQIKSLIGM-LRN------- 270 (311)
Q Consensus 224 ~~l~~~~~-------------~~~~~----~~l~~~L~--~kr~LlVLDdV~~~------~~l~~l~~~-~~~------- 270 (311)
..+..... ...+. ..+-..|. ..+++|||||+... +.+..+... +..
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 66642111 00122 22222222 67899999999753 234444321 111
Q ss_pred -----c------CCceEEEcC----CCChHHHHHHHHHh
Q 042778 271 -----C------CVKEKYEMK----ELGDDHALELFSRH 294 (311)
Q Consensus 271 -----~------~~~~~y~v~----~L~~~ea~~Lf~~~ 294 (311)
. ......++. +|+.+|+.+||...
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~ 198 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR 198 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc
Confidence 0 112344565 89999999999764
No 40
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.03 E-value=3.4e-05 Score=79.10 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=39.6
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-+.++||+.++..+...|.... ..-+.++|.+|+|||+||+.+++++.
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999886432 33467999999999999999999853
No 41
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.03 E-value=2.3e-05 Score=76.44 Aligned_cols=52 Identities=23% Similarity=0.394 Sum_probs=40.0
Q ss_pred CCCccchhhhHHHHHHhhcc-----------cCCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 144 KNQLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
-.++.|.+..++++.+.+.. +-...+-+.++|++|+|||++|+++++.+...
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 35678899999888876532 11225568999999999999999999987554
No 42
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=5.3e-05 Score=76.32 Aligned_cols=49 Identities=24% Similarity=0.271 Sum_probs=39.7
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+++||.+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+.+.
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3578999999999998887432 245567999999999999999998754
No 43
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00011 Score=71.96 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=83.0
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc--CcCceEEEecCcc-ccC-CCCChHHHHH
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS--NFEGSCFLQNVRE-ESQ-RPGGLGFLQQ 220 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~--~F~~~~wv~~~~~-~s~-~~~~~~~l~~ 220 (311)
++++|.+..+..|...+..+. -...+.++|+.|+||||+|+.+++.+.. .+...||.|..-. +.. ...++.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~---- 88 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL---- 88 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE----
Confidence 468999988888888877432 2456799999999999999999998642 2333445441000 000 000000
Q ss_pred HHHHHHhcCCC-CCCCHHHHHHHh-----CCCeEEEEEecCCCh--HHHHHhhcc----CCC-----------------c
Q 042778 221 KLLSKLLQDGI-VIPDIALSFRQL-----SRRKVLIVLDDVTCF--RQIKSLIGM----LRN-----------------C 271 (311)
Q Consensus 221 ~ll~~l~~~~~-~~~~~~~l~~~L-----~~kr~LlVLDdV~~~--~~l~~l~~~----~~~-----------------~ 271 (311)
.+..... .+..+..+++.+ ..++-+||||+++.. ..++.|+.. ... .
T Consensus 89 ----el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 89 ----EIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred ----EecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 0000000 111112222222 245568899999853 345555311 111 2
Q ss_pred CCceEEEcCCCChHHHHHHHHHhhcCC
Q 042778 272 CVKEKYEMKELGDDHALELFSRHAFKQ 298 (311)
Q Consensus 272 ~~~~~y~v~~L~~~ea~~Lf~~~af~~ 298 (311)
.....|++.+|+.++..+.+.+.+-+.
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~e 191 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAE 191 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 345689999999999999998876543
No 44
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00012 Score=71.19 Aligned_cols=49 Identities=24% Similarity=0.226 Sum_probs=38.2
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-+++||.+..+..|...+..+. -...+.++|++|+||||+|+.+++.+.
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3578999888787777776331 135688999999999999999998753
No 45
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.94 E-value=5.8e-05 Score=78.39 Aligned_cols=49 Identities=12% Similarity=0.267 Sum_probs=40.1
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
-+.++||+.++..+...|.... ..-+.++|.+|+||||||+.+++++..
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999886432 334569999999999999999998643
No 46
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00015 Score=71.56 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=39.9
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+..
T Consensus 15 f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357899999999888888643 22456789999999999999999987543
No 47
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.93 E-value=7.7e-05 Score=66.99 Aligned_cols=47 Identities=26% Similarity=0.344 Sum_probs=33.4
Q ss_pred CccchhhhHHHHHHh---hcc-------c---CCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 146 QLVGVESRVEEIESL---LGA-------E---SKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 146 ~~vGr~~~~~~l~~~---L~~-------~---~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.++|++...++|.++ +.. + ......+.++|.+|+||||+|+.+++.+
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 578888766665533 211 0 1235678899999999999999998864
No 48
>PLN03025 replication factor C subunit; Provisional
Probab=97.92 E-value=8.2e-05 Score=68.82 Aligned_cols=136 Identities=16% Similarity=0.236 Sum_probs=77.6
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc-CcCceEEEecCccccCCCCChHHHHHHHH
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS-NFEGSCFLQNVREESQRPGGLGFLQQKLL 223 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~-~F~~~~wv~~~~~~s~~~~~~~~l~~~ll 223 (311)
.+++|.+..+..|..++..+ ..+.+-++|.+|+||||+|+++++.+.. .|...+.-.| .+. ..+...+. .++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd-~~~~~~vr-~~i 85 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASD-DRGIDVVR-NKI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccc-cccHHHHH-HHH
Confidence 46789888888888776632 3455779999999999999999998633 3432211111 122 23333222 222
Q ss_pred HHHhcCCCCCCCHHHHHHHhCCCeEEEEEecCCCh--HHHHHhh---cc--CCC----------------cCCceEEEcC
Q 042778 224 SKLLQDGIVIPDIALSFRQLSRRKVLIVLDDVTCF--RQIKSLI---GM--LRN----------------CCVKEKYEMK 280 (311)
Q Consensus 224 ~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~~~--~~l~~l~---~~--~~~----------------~~~~~~y~v~ 280 (311)
......... .-.++.-++|||+++.. .....|. .. ... ......++++
T Consensus 86 ~~~~~~~~~---------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~ 156 (319)
T PLN03025 86 KMFAQKKVT---------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFS 156 (319)
T ss_pred HHHHhcccc---------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCC
Confidence 211110000 00134568999999853 2333332 11 000 1224578899
Q ss_pred CCChHHHHHHHHHhhc
Q 042778 281 ELGDDHALELFSRHAF 296 (311)
Q Consensus 281 ~L~~~ea~~Lf~~~af 296 (311)
++++++..+.+.+.+=
T Consensus 157 ~l~~~~l~~~L~~i~~ 172 (319)
T PLN03025 157 RLSDQEILGRLMKVVE 172 (319)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999998888877664
No 49
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00029 Score=66.38 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=40.1
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.++++|.+..++.+.+.+..+ .-...+.++|+.|+||||+|+.+++.+.
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 357899999999988888643 2245678999999999999999999864
No 50
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00024 Score=69.55 Aligned_cols=50 Identities=24% Similarity=0.251 Sum_probs=39.7
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+++|.+..+..|...+..+ .-...+.++|..|+||||+|+.+++.+..
T Consensus 20 f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 357899999888888766533 22467889999999999999999998543
No 51
>PRK05642 DNA replication initiation factor; Validated
Probab=97.87 E-value=0.0001 Score=65.09 Aligned_cols=104 Identities=18% Similarity=0.298 Sum_probs=62.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLSRRK 247 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 247 (311)
...+.|||..|+|||.|++++.+.....-..++|++ ... +.... ..+.+.+.+-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~----~~~-------~~~~~--------------~~~~~~~~~~d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP----LAE-------LLDRG--------------PELLDNLEQYE 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee----HHH-------HHhhh--------------HHHHHhhhhCC
Confidence 367899999999999999999987654334456666 111 11100 11222222222
Q ss_pred EEEEEecCCCh---HHHH----Hhhc---cCC-------------C----------cCCceEEEcCCCChHHHHHHHHHh
Q 042778 248 VLIVLDDVTCF---RQIK----SLIG---MLR-------------N----------CCVKEKYEMKELGDDHALELFSRH 294 (311)
Q Consensus 248 ~LlVLDdV~~~---~~l~----~l~~---~~~-------------~----------~~~~~~y~v~~L~~~ea~~Lf~~~ 294 (311)
+||+||+... .+|+ .+.. ..+ + .....++++++++.++-.+++.++
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6788998521 2222 2211 000 0 234578999999999999999977
Q ss_pred hcC
Q 042778 295 AFK 297 (311)
Q Consensus 295 af~ 297 (311)
+..
T Consensus 179 a~~ 181 (234)
T PRK05642 179 ASR 181 (234)
T ss_pred HHH
Confidence 754
No 52
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.85 E-value=4.4e-05 Score=72.92 Aligned_cols=102 Identities=18% Similarity=0.156 Sum_probs=64.5
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc--CcCceEEEecCccccCCCCChHHHHHHH
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS--NFEGSCFLQNVREESQRPGGLGFLQQKL 222 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~--~F~~~~wv~~~~~~s~~~~~~~~l~~~l 222 (311)
.++++.+..++.+...|.. .+.+.++|++|+|||++|+.+++.+.. .|+.+.|++ +++ ..+...+...+
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHp-sySYeDFI~G~ 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQ-SYSYEDFIQGY 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecc-cccHHHHhccc
Confidence 4577788888888887763 346788999999999999999998643 456667777 555 55544433211
Q ss_pred HHHHhcCCCC-CCCH--HHHHHHhC--CCeEEEEEecCCC
Q 042778 223 LSKLLQDGIV-IPDI--ALSFRQLS--RRKVLIVLDDVTC 257 (311)
Q Consensus 223 l~~l~~~~~~-~~~~--~~l~~~L~--~kr~LlVLDdV~~ 257 (311)
.- .+.... .... +.++.... .++++||+|+++.
T Consensus 246 rP--~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 246 RP--NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred CC--CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 00 000001 1111 33443332 3689999999974
No 53
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00014 Score=72.30 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=40.5
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
.+++||.+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+.+..
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3578999999999998887432 2456789999999999999999997643
No 54
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00027 Score=68.31 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=40.2
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..++||.+..+..|..++..+. -...+.++|..|+||||+|+.+++.+..
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4578999999998888887432 1346889999999999999999998654
No 55
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.81 E-value=0.00029 Score=65.24 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=39.7
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
.+++|++..++.+..++..+ ..+.+.++|..|+||||+|+++.+.+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 56899999999998888643 3456789999999999999999998643
No 56
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.80 E-value=6.3e-05 Score=66.35 Aligned_cols=35 Identities=17% Similarity=0.425 Sum_probs=30.5
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
-.++|.|..|.|||||...+.......|.++..++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 36789999999999999999999999997776665
No 57
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.80 E-value=6.7e-05 Score=59.32 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.6
Q ss_pred EEEeccCcchhHHHHHHHHHhhcc
Q 042778 171 LGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
|.|+|..|+||||+|+.+++....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~ 24 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF 24 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc
Confidence 568999999999999999999753
No 58
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.79 E-value=2.9e-05 Score=62.19 Aligned_cols=79 Identities=19% Similarity=0.351 Sum_probs=41.9
Q ss_pred ccEEecCccccCCCChHHHHHHHHHhC-------CCcE----------EeeC-CCCCCCcchHHHHHHHHhccceeeeec
Q 042778 19 YDVFQSFRGEDNRDNFTGHLYSALSQK-------GIET----------FIDD-QLNRGDEISQSLVDAIEASAISLIIFS 80 (311)
Q Consensus 19 ~dvFis~~g~D~~~~f~~~L~~~L~~~-------gi~~----------f~d~-~~~~G~~~~~~i~~ai~~s~~~i~v~S 80 (311)
|.|||||.+.|.. .....|...+... .+.. +.+. +......|...|.++|..|.++||+.|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5799999999864 3666666666663 2221 1222 333445789999999999999999999
Q ss_pred cCcccccchHHHHHHHHh
Q 042778 81 EAYASSRWCLDELVKILT 98 (311)
Q Consensus 81 ~~y~~S~wcl~El~~i~e 98 (311)
++-..|.|+-.|+...++
T Consensus 80 ~~T~~s~wV~~EI~~A~~ 97 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK 97 (130)
T ss_dssp TT----HHHHHHHHHHTT
T ss_pred CCcccCcHHHHHHHHHHH
Confidence 999999999999876554
No 59
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.79 E-value=0.00018 Score=74.97 Aligned_cols=49 Identities=14% Similarity=0.299 Sum_probs=39.9
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
-+.++||+.++..+...|.... ..-+.++|.+|+|||+||+.+.+++..
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3568999999999999887532 334558999999999999999998644
No 60
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00031 Score=70.08 Aligned_cols=50 Identities=28% Similarity=0.274 Sum_probs=40.9
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..++||.+..++.|..++..+. -...+.++|..|+||||+|+.+++.+..
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3578999999999998887432 2567899999999999999999988643
No 61
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00038 Score=69.55 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=39.7
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.+.
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3578999988888888887432 246678999999999999999988754
No 62
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.77 E-value=0.0002 Score=64.92 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=75.5
Q ss_pred CCCccchh---hhHHHHHHhhccc-CCCeEEEEEeccCcchhHHHHHHHHHhhccCcC------ceEEEecCccccCCCC
Q 042778 144 KNQLVGVE---SRVEEIESLLGAE-SKDVYALGIWGIGGIDRTTIARAIFNKISSNFE------GSCFLQNVREESQRPG 213 (311)
Q Consensus 144 ~~~~vGr~---~~~~~l~~~L~~~-~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~------~~~wv~~~~~~s~~~~ 213 (311)
.+..||.. ..++.|.++|... ....+-+.|+|-+|+|||+|++.+.+.....++ .++.+. +.. .+
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~-~p 107 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPP-EP 107 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCC-CC
Confidence 45666654 3455666667643 234678999999999999999999987544443 234444 566 89
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCH----HHHHHHhCCC-eEEEEEecCCC
Q 042778 214 GLGFLQQKLLSKLLQDGIVIPDI----ALSFRQLSRR-KVLIVLDDVTC 257 (311)
Q Consensus 214 ~~~~l~~~ll~~l~~~~~~~~~~----~~l~~~L~~k-r~LlVLDdV~~ 257 (311)
+...+...||..++......... ......|+.- -=+||+|++.+
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 99999999999998776522232 3344555553 34899999986
No 63
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.76 E-value=0.00011 Score=57.76 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=27.7
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
..+.|+|.+|+||||+|+.+...........+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 47899999999999999999998766553344444
No 64
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00034 Score=70.19 Aligned_cols=141 Identities=15% Similarity=0.132 Sum_probs=80.3
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLL 223 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll 223 (311)
..++||.+..+..|...+..+. -...+.++|..|+||||+|+.+++.+...... ... .++.....+.|.
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~---------~~~-pCg~C~~C~~i~ 83 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI---------TAT-PCGECDNCREIE 83 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC---------CCC-CCCCCHHHHHHH
Confidence 4578999999998888887432 14556899999999999999999876443110 000 111111111111
Q ss_pred HH-------HhcCC-CCCCCHHHHHHH-----hCCCeEEEEEecCCC--hHHHHHhhc----cCCC--------------
Q 042778 224 SK-------LLQDG-IVIPDIALSFRQ-----LSRRKVLIVLDDVTC--FRQIKSLIG----MLRN-------------- 270 (311)
Q Consensus 224 ~~-------l~~~~-~~~~~~~~l~~~-----L~~kr~LlVLDdV~~--~~~l~~l~~----~~~~-------------- 270 (311)
.. +.... ..++++..+.+. ..+++-++|+|+|+. ....+.|+. .+..
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 00000 001111111111 235666899999984 445665531 1111
Q ss_pred ---cCCceEEEcCCCChHHHHHHHHHhh
Q 042778 271 ---CCVKEKYEMKELGDDHALELFSRHA 295 (311)
Q Consensus 271 ---~~~~~~y~v~~L~~~ea~~Lf~~~a 295 (311)
......|++++|+.++..+.+.+.+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHH
Confidence 2335789999999999988887654
No 65
>PHA00729 NTP-binding motif containing protein
Probab=97.75 E-value=7.4e-05 Score=65.24 Aligned_cols=101 Identities=14% Similarity=0.164 Sum_probs=59.8
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccCc-------------CceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCC
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSNF-------------EGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVI 233 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F-------------~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~ 233 (311)
+...|.|.|.+|+||||||.++.+++..++ ..+.+++ ...+...|-.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid-----------~~~Ll~~L~~--------- 75 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFE-----------LPDALEKIQD--------- 75 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEE-----------HHHHHHHHHH---------
Confidence 455789999999999999999999854211 1122222 3333333321
Q ss_pred CCHHHHHHHhCC-Ce-EEEEEecC--CChH-HHH--------HhhccCCCcCCceEEEcCCCChHHHHHHHHHhhcC
Q 042778 234 PDIALSFRQLSR-RK-VLIVLDDV--TCFR-QIK--------SLIGMLRNCCVKEKYEMKELGDDHALELFSRHAFK 297 (311)
Q Consensus 234 ~~~~~l~~~L~~-kr-~LlVLDdV--~~~~-~l~--------~l~~~~~~~~~~~~y~v~~L~~~ea~~Lf~~~af~ 297 (311)
...+ .+ =|||+||+ |-.. .|. .+.+.. ......+.+.+++.++..+++..+.+.
T Consensus 76 --------a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aL--rSR~~l~il~~ls~edL~~~Lr~Rg~~ 142 (226)
T PHA00729 76 --------AIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALI--RTRVSAVIFTTPSPEDLAFYLREKGWY 142 (226)
T ss_pred --------HHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHH--HhhCcEEEEecCCHHHHHHHHHhCCCc
Confidence 1111 11 28999993 3221 111 111111 123466889999999999999998774
No 66
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.74 E-value=9e-05 Score=66.63 Aligned_cols=89 Identities=16% Similarity=0.239 Sum_probs=58.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC-H-----
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD-I----- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~-~----- 236 (311)
-..++|.|-.|.|||||++.++++++.+|+..+++..+++- ......+...+...-..... ..++ .
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer---~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER---TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 45789999999999999999999998888777777655442 34555555555432111100 1111 0
Q ss_pred -----HHHHHHh---CCCeEEEEEecCCChH
Q 042778 237 -----ALSFRQL---SRRKVLIVLDDVTCFR 259 (311)
Q Consensus 237 -----~~l~~~L---~~kr~LlVLDdV~~~~ 259 (311)
-.+.+++ .++++||++||+....
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a 176 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRFT 176 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHHH
Confidence 3344444 3799999999997543
No 67
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.74 E-value=0.00011 Score=76.63 Aligned_cols=49 Identities=14% Similarity=0.284 Sum_probs=40.2
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
-+.++||+.++..+++.|.... ..-+.++|.+|+||||||+.+..++..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 4578999999999999887432 334568999999999999999998643
No 68
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.74 E-value=0.00035 Score=64.14 Aligned_cols=48 Identities=27% Similarity=0.351 Sum_probs=39.6
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
.+++|++..++.+..++..+ ..+.+.|+|..|+||||+|+.+.+....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 56889999999999888643 3445799999999999999999998543
No 69
>PRK08118 topology modulation protein; Reviewed
Probab=97.71 E-value=2.8e-05 Score=65.13 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=28.1
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc---cCcCceEEEe
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS---SNFEGSCFLQ 203 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~---~~F~~~~wv~ 203 (311)
.|.|+|++|+||||||+.+++... .+||..+|-.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~ 39 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP 39 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 588999999999999999999854 3577777654
No 70
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.70 E-value=0.00027 Score=61.84 Aligned_cols=113 Identities=18% Similarity=0.266 Sum_probs=66.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCc--eEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEG--SCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLSR 245 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~--~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~ 245 (311)
...+-|||..|+|||.|.+++++.+...... +++++ ...+...+...+.. .....+++.++.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~~~~~~~~-----~~~~~~~~~~~~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIREFADALRD-----GEIEEFKDRLRS 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHHHHHHHHT-----TSHHHHHHHHCT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHHHHHHHHc-----ccchhhhhhhhc
Confidence 4567899999999999999999986654332 34444 23344444443332 122445555653
Q ss_pred CeEEEEEecCCCh---HHHH-Hhh---------c---------cCC-C----------cCCceEEEcCCCChHHHHHHHH
Q 042778 246 RKVLIVLDDVTCF---RQIK-SLI---------G---------MLR-N----------CCVKEKYEMKELGDDHALELFS 292 (311)
Q Consensus 246 kr~LlVLDdV~~~---~~l~-~l~---------~---------~~~-~----------~~~~~~y~v~~L~~~ea~~Lf~ 292 (311)
- =+|+||||+.. ..|+ .+. + .+. . ....-++++++++.++-.+++.
T Consensus 98 ~-DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~ 176 (219)
T PF00308_consen 98 A-DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQ 176 (219)
T ss_dssp S-SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHH
T ss_pred C-CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHH
Confidence 3 36788998642 2121 121 0 000 0 3456789999999999999999
Q ss_pred HhhcC
Q 042778 293 RHAFK 297 (311)
Q Consensus 293 ~~af~ 297 (311)
++|-.
T Consensus 177 ~~a~~ 181 (219)
T PF00308_consen 177 KKAKE 181 (219)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 71
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.67 E-value=0.00044 Score=65.82 Aligned_cols=52 Identities=17% Similarity=0.340 Sum_probs=39.6
Q ss_pred CCccchhhhHHHHHHhhcc-----------cCCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 145 NQLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
.++.|.+..+++|.+.+.. +-...+-+.++|.+|+|||+||+++++.....|
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f 207 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF 207 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 4678999888888776531 112356789999999999999999999865543
No 72
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.00051 Score=69.02 Aligned_cols=49 Identities=29% Similarity=0.342 Sum_probs=40.2
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..++||.+..++.|..++..+. -...+.++|..|+||||+|+.+.+.+.
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3578999999999999887432 245789999999999999999988753
No 73
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00045 Score=63.71 Aligned_cols=132 Identities=14% Similarity=0.169 Sum_probs=77.4
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc------cCcCceEEEecCccccCCCCChHHH
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS------SNFEGSCFLQNVREESQRPGGLGFL 218 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~------~~F~~~~wv~~~~~~s~~~~~~~~l 218 (311)
.+++|.+..++.+...+..+ .-.....++|+.|+||||+|+.+++.+. .+.|...|...- .. ......+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~---~~-~i~v~~i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN---KK-SIGVDDI 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc---CC-CCCHHHH
Confidence 46789988889898888643 2256778999999999999999999742 234444443310 11 2333332
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHhCCCeEEEEEecCC--ChHHHHHhhc----cCC-C----------------cCCce
Q 042778 219 QQKLLSKLLQDGIVIPDIALSFRQLSRRKVLIVLDDVT--CFRQIKSLIG----MLR-N----------------CCVKE 275 (311)
Q Consensus 219 ~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~--~~~~l~~l~~----~~~-~----------------~~~~~ 275 (311)
. .+...+... -...++| ++|+|+++ +...++.|+. +++ . .....
T Consensus 79 r-~~~~~~~~~-----------p~~~~~k-v~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 79 R-NIIEEVNKK-----------PYEGDKK-VIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred H-HHHHHHhcC-----------cccCCce-EEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 2 232322111 0112344 44555543 4555555541 111 1 23357
Q ss_pred EEEcCCCChHHHHHHHHHh
Q 042778 276 KYEMKELGDDHALELFSRH 294 (311)
Q Consensus 276 ~y~v~~L~~~ea~~Lf~~~ 294 (311)
.+++++++.++..+.+.+.
T Consensus 146 ~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred eeeCCCcCHHHHHHHHHHH
Confidence 8899999999988877654
No 74
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.00069 Score=65.95 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=38.9
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..++||.+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+.
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHc
Confidence 4578999988888887776432 145788999999999999999988653
No 75
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.63 E-value=0.00015 Score=75.44 Aligned_cols=48 Identities=23% Similarity=0.410 Sum_probs=39.7
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-+.++||+.+++.+.+.|.... ..-+.++|.+|+|||+||+.++.++.
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999997432 23456999999999999999999854
No 76
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.63 E-value=0.0004 Score=61.41 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=27.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
.+.+.|+|+.|+|||+|++++++.....-..+.++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~ 80 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP 80 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 467899999999999999999998654433345554
No 77
>PRK09087 hypothetical protein; Validated
Probab=97.62 E-value=0.00015 Score=63.81 Aligned_cols=25 Identities=20% Similarity=0.078 Sum_probs=22.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.+.+.|||..|+|||+|++++++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc
Confidence 4568999999999999999988764
No 78
>PRK12377 putative replication protein; Provisional
Probab=97.62 E-value=0.00018 Score=64.00 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=29.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
...+.|+|..|+|||+||.++.+.+......+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 457899999999999999999999766544556665
No 79
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.0012 Score=62.71 Aligned_cols=50 Identities=28% Similarity=0.274 Sum_probs=40.3
Q ss_pred CCccchhhhHHHHHHhhcccCC--------CeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 145 NQLVGVESRVEEIESLLGAESK--------DVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
++++|.+..++.|...+..+.+ -...+.++|+.|+||||+|+.+++.+-.
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4688999999999998875431 2567889999999999999999887543
No 80
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.00046 Score=67.79 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=40.0
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..++||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+.+.
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3578999999999999886431 245678999999999999999999754
No 81
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.60 E-value=7.6e-05 Score=61.12 Aligned_cols=65 Identities=25% Similarity=0.392 Sum_probs=55.8
Q ss_pred cEEecCccccC-CCChHHHHHHHHHhC-CCcEEeeC-CCCC--CCcchHHHHHHHHhccceeeeeccCcc
Q 042778 20 DVFQSFRGEDN-RDNFTGHLYSALSQK-GIETFIDD-QLNR--GDEISQSLVDAIEASAISLIIFSEAYA 84 (311)
Q Consensus 20 dvFis~~g~D~-~~~f~~~L~~~L~~~-gi~~f~d~-~~~~--G~~~~~~i~~ai~~s~~~i~v~S~~y~ 84 (311)
-|||||+.... ...+|-.|+..|++. |+.|.+|. +... +..+...+.+.|++++..|+|+||.|.
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~~ 71 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGYK 71 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccchh
Confidence 49999999543 346799999999999 99999998 6644 678889999999999999999998763
No 82
>CHL00176 ftsH cell division protein; Validated
Probab=97.59 E-value=0.00034 Score=70.35 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=37.4
Q ss_pred CCCccchhhhHHHHHHhhcc---c-------CCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGA---E-------SKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+++|.+...+++.+++.. . ..-.+-+.++|.+|+|||+||++++.....
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~ 242 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV 242 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56788998777776665422 1 111456899999999999999999987543
No 83
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.58 E-value=0.00043 Score=66.53 Aligned_cols=52 Identities=25% Similarity=0.424 Sum_probs=40.0
Q ss_pred CCccchhhhHHHHHHhhccc-----------CCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 145 NQLVGVESRVEEIESLLGAE-----------SKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
.++.|++..+++|.+.+... -...+-+.++|.+|+|||+||+++++.....|
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f 245 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF 245 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 35678999999888866421 12345688999999999999999999876655
No 84
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.57 E-value=0.00068 Score=61.71 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=31.6
Q ss_pred CccchhhhHHHHHHhhc---c-------c--CC-CeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 146 QLVGVESRVEEIESLLG---A-------E--SK-DVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 146 ~~vGr~~~~~~l~~~L~---~-------~--~~-~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.++|.+...++|.++.. . + .. ...-+.++|.+|.||||+|+.+++.+
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 57787766666554321 1 0 01 12358899999999999998888764
No 85
>PRK08116 hypothetical protein; Validated
Probab=97.57 E-value=0.00016 Score=65.24 Aligned_cols=74 Identities=26% Similarity=0.356 Sum_probs=44.6
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCeE
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLSRRKV 248 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~ 248 (311)
.-+.|+|..|+|||.||.++++.+..+-..++++. ...+...+........ ......+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~~--~~~~~~~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSSG--KEDENEIIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhccc--cccHHHHHHHhcCCC-
Confidence 35889999999999999999999765533445554 2223333332222111 111233444455444
Q ss_pred EEEEecCC
Q 042778 249 LIVLDDVT 256 (311)
Q Consensus 249 LlVLDdV~ 256 (311)
||||||+.
T Consensus 181 lLviDDlg 188 (268)
T PRK08116 181 LLILDDLG 188 (268)
T ss_pred EEEEeccc
Confidence 89999993
No 86
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.56 E-value=0.00072 Score=65.57 Aligned_cols=113 Identities=12% Similarity=0.138 Sum_probs=67.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCc--eEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEG--SCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLSR 245 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~--~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~ 245 (311)
...+.|+|..|+|||+|++++.+.+...+.. +.++. ...+...+...+... ....+.+.++.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTNDFVNALRNN-----TMEEFKEKYRS 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHcC-----cHHHHHHHHhc
Confidence 4568999999999999999999997766533 33444 122233333333211 11334444443
Q ss_pred CeEEEEEecCCCh---H-HHHHh-------hccCCC----------------------cCCceEEEcCCCChHHHHHHHH
Q 042778 246 RKVLIVLDDVTCF---R-QIKSL-------IGMLRN----------------------CCVKEKYEMKELGDDHALELFS 292 (311)
Q Consensus 246 kr~LlVLDdV~~~---~-~l~~l-------~~~~~~----------------------~~~~~~y~v~~L~~~ea~~Lf~ 292 (311)
--+||||||... + ..+.+ ...... .....++++++++.++-.+++.
T Consensus 212 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 212 -VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 337888999531 1 11111 100000 3344678999999999999999
Q ss_pred HhhcC
Q 042778 293 RHAFK 297 (311)
Q Consensus 293 ~~af~ 297 (311)
+++-.
T Consensus 291 ~~~~~ 295 (450)
T PRK00149 291 KKAEE 295 (450)
T ss_pred HHHHH
Confidence 98753
No 87
>PRK07261 topology modulation protein; Provisional
Probab=97.56 E-value=0.00026 Score=59.47 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=25.8
Q ss_pred EEEEeccCcchhHHHHHHHHHhhcc---CcCceEEEe
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISS---NFEGSCFLQ 203 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~---~F~~~~wv~ 203 (311)
.|.|+|++|+||||||+.+...... +.|...|-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~ 38 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP 38 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc
Confidence 4899999999999999999876422 345555543
No 88
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.55 E-value=0.00057 Score=66.03 Aligned_cols=113 Identities=10% Similarity=0.114 Sum_probs=66.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLSRRK 247 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 247 (311)
..-+.|+|..|+|||+|++++.+.+...-..+.++. ...+...+...+... ....++..++. .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~-----~~~~f~~~~~~-~ 203 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG-----EMQRFRQFYRN-V 203 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc-----hHHHHHHHccc-C
Confidence 356889999999999999999998754433344554 122333333333211 11334444433 3
Q ss_pred EEEEEecCCChH-------HHHHh----hccCCC----------------------cCCceEEEcCCCChHHHHHHHHHh
Q 042778 248 VLIVLDDVTCFR-------QIKSL----IGMLRN----------------------CCVKEKYEMKELGDDHALELFSRH 294 (311)
Q Consensus 248 ~LlVLDdV~~~~-------~l~~l----~~~~~~----------------------~~~~~~y~v~~L~~~ea~~Lf~~~ 294 (311)
-+|++||+.... .+-.+ ...... ...+.++++++++.++-..++.++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 477789985321 11111 100000 334578899999999999999887
Q ss_pred hcC
Q 042778 295 AFK 297 (311)
Q Consensus 295 af~ 297 (311)
+=.
T Consensus 284 ~~~ 286 (445)
T PRK12422 284 AEA 286 (445)
T ss_pred HHH
Confidence 743
No 89
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.53 E-value=0.00081 Score=65.14 Aligned_cols=114 Identities=17% Similarity=0.255 Sum_probs=68.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcC--ceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFE--GSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLSR 245 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~--~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~ 245 (311)
..-+.|+|..|+|||+|++++.+.+..... .++++. ...+...+...+.... ..++.+++.++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~---~~~~~~~~~~~~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH---KEIEQFKNEICQ 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh---hHHHHHHHHhcc
Confidence 356889999999999999999997654322 223443 2344555554443211 112334444443
Q ss_pred CeEEEEEecCCCh----HHHHHhh-------ccCCC----------------------cCCceEEEcCCCChHHHHHHHH
Q 042778 246 RKVLIVLDDVTCF----RQIKSLI-------GMLRN----------------------CCVKEKYEMKELGDDHALELFS 292 (311)
Q Consensus 246 kr~LlVLDdV~~~----~~l~~l~-------~~~~~----------------------~~~~~~y~v~~L~~~ea~~Lf~ 292 (311)
.-+|||||+... ...+.+. ..... ...+-+.++++++.++-.+++.
T Consensus 207 -~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 207 -NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred -CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 347888999632 1122221 00000 3345678899999999999999
Q ss_pred Hhhc
Q 042778 293 RHAF 296 (311)
Q Consensus 293 ~~af 296 (311)
+++=
T Consensus 286 ~~~~ 289 (450)
T PRK14087 286 KEIK 289 (450)
T ss_pred HHHH
Confidence 8874
No 90
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.52 E-value=0.00072 Score=68.02 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=38.5
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.++++|.+..+..+.+.+.. .....+.|+|.+|+||||||+.+++..
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred HHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999988888777643 235579999999999999999998864
No 91
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.52 E-value=0.00035 Score=62.08 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=33.8
Q ss_pred HHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 154 VEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 154 ~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
+..+.+....-......+.++|.+|+|||+||.++.+.+...-..++++.
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34444444322223457889999999999999999998655444555655
No 92
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.52 E-value=0.0017 Score=60.64 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=39.8
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-.+++|.+..++.+.+.+..+. -...+-++|..|+||||+|+.+.+.+.
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3568999999999998886432 245778999999999999999998753
No 93
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.002 Score=59.47 Aligned_cols=146 Identities=18% Similarity=0.323 Sum_probs=89.6
Q ss_pred CCccchhhhHHHHHHhhccc-----------CCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCC
Q 042778 145 NQLVGVESRVEEIESLLGAE-----------SKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPG 213 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~ 213 (311)
.++=|.+..+++|.+-.... -+..+=|.+||++|.|||-||++|+++....| +. +..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Ir----vvg--- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IR----VVG--- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EE----ecc---
Confidence 34558899999988866431 12356788999999999999999999986654 43 222
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCHHHHHHHhC-CCeEEEEEecCCC-------------hH----HHHHhh---c--cCCC
Q 042778 214 GLGFLQQKLLSKLLQDGIVIPDIALSFRQLS-RRKVLIVLDDVTC-------------FR----QIKSLI---G--MLRN 270 (311)
Q Consensus 214 ~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~-~kr~LlVLDdV~~-------------~~----~l~~l~---~--~~~~ 270 (311)
.+|.....++...+ +..+.+.-+ +..++|.+|.++. .+ .++-|. | ..++
T Consensus 219 ------SElVqKYiGEGaRl--VRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 219 ------SELVQKYIGEGARL--VRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred ------HHHHHHHhccchHH--HHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 12333333332200 022222222 4678999999873 11 111111 1 0111
Q ss_pred --------------------cCCceEEEcCCCChHHHHHHHHHhhcCCC-CCCCcHHHhhc
Q 042778 271 --------------------CCVKEKYEMKELGDDHALELFSRHAFKQN-NPHIGFEELSS 310 (311)
Q Consensus 271 --------------------~~~~~~y~v~~L~~~ea~~Lf~~~af~~~-~~~~~~~~l~~ 310 (311)
...++.++++.-+.+.-.++|.=|+-+=+ ...-+|+.|++
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~ 351 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLAR 351 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHH
Confidence 34678899998888888889988876533 44567877764
No 94
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.51 E-value=0.0015 Score=60.13 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=40.0
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+++|.+...+.+..++..+ .-..++.++|.+|+||||+|+++++...
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 357899999999998888742 2256777799999999999999998764
No 95
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.49 E-value=0.00085 Score=65.89 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=37.2
Q ss_pred CCCccchhhhHHHHHHhhcc----------cCCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 144 KNQLVGVESRVEEIESLLGA----------ESKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
-++++|.+...+++.+++.. +....+-+.++|++|+|||+||+++++.....
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~ 115 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 115 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 56788988777666654431 11224458899999999999999999875443
No 96
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.00099 Score=65.79 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=39.8
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+++|.+..++.+...+..+. -...+.++|..|+||||+|+.+.+.+..
T Consensus 15 f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3568999999998888887432 1456789999999999999999987643
No 97
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.0018 Score=61.04 Aligned_cols=137 Identities=15% Similarity=0.217 Sum_probs=79.9
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccC--------cCceEEEecCccccCCCCCh
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSN--------FEGSCFLQNVREESQRPGGL 215 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~--------F~~~~wv~~~~~~s~~~~~~ 215 (311)
-++++|.+..++.+.+.+..+ .-.+.+-++|+.|+||||+|+.+.+.+... |...+.-.+ ... ..+.
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~---~~~-~~~~ 90 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD---AAS-NNSV 90 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec---ccc-CCCH
Confidence 356899999999998888643 225688899999999999999998875431 222111110 011 1222
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCeEEEEEecCCCh--HHHHHhh----ccCCC-----------------cC
Q 042778 216 GFLQQKLLSKLLQDGIVIPDIALSFRQLSRRKVLIVLDDVTCF--RQIKSLI----GMLRN-----------------CC 272 (311)
Q Consensus 216 ~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~~~--~~l~~l~----~~~~~-----------------~~ 272 (311)
..+. .++..+... -..+++-+||+|+++.. ..++.+. ..+.. ..
T Consensus 91 ~~i~-~l~~~~~~~------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 91 DDIR-NLIDQVRIP------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHH-HHHHHHhhc------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 2222 222221100 01234457899988643 2344442 11111 12
Q ss_pred CceEEEcCCCChHHHHHHHHHhhcCC
Q 042778 273 VKEKYEMKELGDDHALELFSRHAFKQ 298 (311)
Q Consensus 273 ~~~~y~v~~L~~~ea~~Lf~~~af~~ 298 (311)
....++.++++.++....+...+-..
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~ 183 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKE 183 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHc
Confidence 34578999999999888888766543
No 98
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.47 E-value=9.3e-05 Score=57.95 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=21.5
Q ss_pred EEEEeccCcchhHHHHHHHHHhh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
+|+|.|++|+||||+|+.+.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999975
No 99
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.00051 Score=65.50 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=39.8
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+..
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4578999988888888886431 1445889999999999999999998644
No 100
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.00082 Score=62.95 Aligned_cols=143 Identities=17% Similarity=0.139 Sum_probs=84.2
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccC----cCceEEEecCccccCCCCChHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSN----FEGSCFLQNVREESQRPGGLGFLQ 219 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~----F~~~~wv~~~~~~s~~~~~~~~l~ 219 (311)
...++|.+.....+...+..+ .-...+.|+|..|+||||+|..+.+.+-.+ +..... .. ..+-....
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~-------~~-~~~~c~~c 92 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL-------AD-PDPASPVW 92 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc-------CC-CCCCCHHH
Confidence 467899999999998888743 225578999999999999999999986442 111100 00 11111122
Q ss_pred HHHHHH-------HhcC---CC-------CCCCHHHHHHHhC-----CCeEEEEEecCCC--hHHHHHhh----ccCCC-
Q 042778 220 QKLLSK-------LLQD---GI-------VIPDIALSFRQLS-----RRKVLIVLDDVTC--FRQIKSLI----GMLRN- 270 (311)
Q Consensus 220 ~~ll~~-------l~~~---~~-------~~~~~~~l~~~L~-----~kr~LlVLDdV~~--~~~l~~l~----~~~~~- 270 (311)
+.+... +... .. .++++..+.+++. +++-++|+|+++. ....+.|+ ..+..
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 222111 1000 00 0111234444443 4566899999985 33444443 11111
Q ss_pred ----------------cCCceEEEcCCCChHHHHHHHHHhh
Q 042778 271 ----------------CCVKEKYEMKELGDDHALELFSRHA 295 (311)
Q Consensus 271 ----------------~~~~~~y~v~~L~~~ea~~Lf~~~a 295 (311)
......+.+.+|+.++..+++...+
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~ 213 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLG 213 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhh
Confidence 2344689999999999999998754
No 101
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.45 E-value=0.0011 Score=64.05 Aligned_cols=113 Identities=11% Similarity=0.135 Sum_probs=66.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcC--ceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFE--GSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLSR 245 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~--~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~ 245 (311)
..-+.|||..|+|||+|++++++.+..... .+.|+. ...+...+...+... ....+++.++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~~~~~~~~-----~~~~f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEG-----KLNEFREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHhcc-----cHHHHHHHHHh
Confidence 445999999999999999999998765543 234544 122333443333211 12233333333
Q ss_pred CeEEEEEecCCCh---H----HHHHhh----ccCCC----------------------cCCceEEEcCCCChHHHHHHHH
Q 042778 246 RKVLIVLDDVTCF---R----QIKSLI----GMLRN----------------------CCVKEKYEMKELGDDHALELFS 292 (311)
Q Consensus 246 kr~LlVLDdV~~~---~----~l~~l~----~~~~~----------------------~~~~~~y~v~~L~~~ea~~Lf~ 292 (311)
+.-+|+|||+... . .+-.+. ..... ...+.+.++++.+.+.-..++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 3447778888632 1 111111 00000 2344678899999999999998
Q ss_pred Hhhc
Q 042778 293 RHAF 296 (311)
Q Consensus 293 ~~af 296 (311)
+.+-
T Consensus 274 ~~~~ 277 (440)
T PRK14088 274 KMLE 277 (440)
T ss_pred HHHH
Confidence 8874
No 102
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.45 E-value=0.0013 Score=65.43 Aligned_cols=49 Identities=24% Similarity=0.219 Sum_probs=39.9
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+.
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 357899999999888887643 2246788999999999999999999864
No 103
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.44 E-value=0.00073 Score=63.28 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=62.1
Q ss_pred HHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCc-Cce-EEEecCccccCCCCChHHHHHHHHHHHhcCCCCCC
Q 042778 157 IESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNF-EGS-CFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIP 234 (311)
Q Consensus 157 l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F-~~~-~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~ 234 (311)
+++++..-. .-..++|+|..|+|||||++.+++.+..+. +.. +|+. +.++.....++.+.++..+.....+..
T Consensus 123 vID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~l----IgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 123 VVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLL----IDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEE----ecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 666665322 234569999999999999999999876544 443 4444 333366778888888776554322111
Q ss_pred C---H------HHHHHHh--CCCeEEEEEecCCChH
Q 042778 235 D---I------ALSFRQL--SRRKVLIVLDDVTCFR 259 (311)
Q Consensus 235 ~---~------~~l~~~L--~~kr~LlVLDdV~~~~ 259 (311)
. . ..+-+++ .+++++||+|++....
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHH
Confidence 1 1 1122222 4799999999997543
No 104
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0024 Score=63.57 Aligned_cols=50 Identities=26% Similarity=0.250 Sum_probs=40.2
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..++||.+..++.|...+..+ .-...+.++|..|+||||+|+.+++.+..
T Consensus 12 f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357899999999999888743 12445789999999999999999987653
No 105
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.43 E-value=0.00017 Score=67.47 Aligned_cols=124 Identities=20% Similarity=0.243 Sum_probs=83.0
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-CCCCH-HHHHHHhC
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-VIPDI-ALSFRQLS 244 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-~~~~~-~~l~~~L~ 244 (311)
..+.+.++|.|||||||++-.+.. +...|....|+.+..+++. ..+.--++....+-.. .-++. ..+..++.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD-----~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITD-----PALVFPTLAGALGLHVQPGDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCc-----hhHhHHHHHhhcccccccchHHHHHHHHHHh
Confidence 478999999999999999999999 8888987777776666555 2222222222122111 21222 57788889
Q ss_pred CCeEEEEEecCCChHH-----HHHhhccCCC------------cCCceEEEcCCCChH-HHHHHHHHhhc
Q 042778 245 RRKVLIVLDDVTCFRQ-----IKSLIGMLRN------------CCVKEKYEMKELGDD-HALELFSRHAF 296 (311)
Q Consensus 245 ~kr~LlVLDdV~~~~~-----l~~l~~~~~~------------~~~~~~y~v~~L~~~-ea~~Lf~~~af 296 (311)
++|.++|+||..+... +..+.+.+.. ...+..+.++.|+.. ++.++|.-.|-
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~ 156 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAV 156 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHH
Confidence 9999999999865321 2233333222 445677888988877 79999887764
No 106
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.42 E-value=0.00088 Score=68.68 Aligned_cols=47 Identities=23% Similarity=0.303 Sum_probs=38.7
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-+.++||+.++.++.+.|.... ..-+.++|.+|+|||+||+.+++++
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999887532 2234579999999999999999874
No 107
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.42 E-value=0.0019 Score=66.79 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=39.9
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..++||.+..++.|...|..+. -...+.++|..|+||||+|+.+.+.+.+
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 3468999988888888887432 1356789999999999999999998643
No 108
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.41 E-value=0.0049 Score=52.30 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=23.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...+.++|..|+||||+|+.+.+.+.
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 46789999999999999999998854
No 109
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.0015 Score=65.16 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=39.4
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+++|.+..++.|...+..+ .-...+.++|..|+||||+|+.+.+.+..
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 356789888888888877633 12567889999999999999999988643
No 110
>PRK06696 uridine kinase; Validated
Probab=97.36 E-value=0.00027 Score=61.93 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=36.4
Q ss_pred chhhhHHHHHHhhcc-cCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 149 GVESRVEEIESLLGA-ESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 149 Gr~~~~~~l~~~L~~-~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
.|+..+++|.+.+.. ......+|+|.|.+|.||||||+.+.+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356677777777653 3445889999999999999999999987643
No 111
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.36 E-value=0.00067 Score=59.44 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=35.1
Q ss_pred CCcc-chhh-hHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 145 NQLV-GVES-RVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 145 ~~~v-Gr~~-~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
++++ |... .+..+.++.. .....+.+.|+|..|+|||+||+++++.....=....+++
T Consensus 18 d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 18 DNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred cccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3444 4433 3333444433 2233567889999999999999999997533222334444
No 112
>PRK06620 hypothetical protein; Validated
Probab=97.34 E-value=0.00033 Score=61.09 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.9
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
+.+-|||..|+|||+|++++.+...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 6789999999999999999877653
No 113
>CHL00181 cbbX CbbX; Provisional
Probab=97.33 E-value=0.003 Score=57.55 Aligned_cols=48 Identities=21% Similarity=0.262 Sum_probs=32.4
Q ss_pred CCccchhhhHHHHHHhh---cc-------c---CCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 145 NQLVGVESRVEEIESLL---GA-------E---SKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L---~~-------~---~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.+++|.+...++|.++. .. + .+....+.++|.+|+||||+|+.+++..
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45788776666554432 11 0 1123357889999999999999998864
No 114
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.31 E-value=0.0026 Score=63.67 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=41.5
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
..+++|.+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+...
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 4578999999999999887432 25578899999999999999999986543
No 115
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0022 Score=64.37 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=39.7
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..++||.+..+..|...+..+ .-...+.++|+.|+||||+|+.+.+.+..
T Consensus 15 f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357899998888888877632 12455889999999999999999988644
No 116
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.30 E-value=0.0023 Score=61.21 Aligned_cols=113 Identities=14% Similarity=0.173 Sum_probs=66.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCc--eEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEG--SCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLSR 245 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~--~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~ 245 (311)
...+.|+|..|+|||+|++++++.+...... ++++. ...+...+...+... ....+.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTNDFVNALRNN-----KMEEFKEKYRS 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHHHHHHHHHcC-----CHHHHHHHHHh
Confidence 3568899999999999999999987655432 34443 122333344333221 12334444433
Q ss_pred CeEEEEEecCCCh---HH-HHHhh-------ccCCC----------------------cCCceEEEcCCCChHHHHHHHH
Q 042778 246 RKVLIVLDDVTCF---RQ-IKSLI-------GMLRN----------------------CCVKEKYEMKELGDDHALELFS 292 (311)
Q Consensus 246 kr~LlVLDdV~~~---~~-l~~l~-------~~~~~----------------------~~~~~~y~v~~L~~~ea~~Lf~ 292 (311)
.-+|||||+... +. .+.+. ..... .....++++++.+.++-..++.
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 237888999632 11 11111 00000 2234578899999999999999
Q ss_pred HhhcC
Q 042778 293 RHAFK 297 (311)
Q Consensus 293 ~~af~ 297 (311)
+++-.
T Consensus 279 ~~~~~ 283 (405)
T TIGR00362 279 KKAEE 283 (405)
T ss_pred HHHHH
Confidence 88754
No 117
>PRK07667 uridine kinase; Provisional
Probab=97.29 E-value=0.00056 Score=58.55 Aligned_cols=40 Identities=18% Similarity=0.368 Sum_probs=31.7
Q ss_pred HHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 154 VEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 154 ~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
+..+.+.|........+|||.|.+|.||||+|+.+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455666655455578999999999999999999998754
No 118
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.29 E-value=0.00021 Score=66.60 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=26.8
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
-.+.++|||++|+|||.+|++++++....|
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 378999999999999999999999976654
No 119
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.28 E-value=0.0014 Score=57.52 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=33.2
Q ss_pred HHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccC------cCceEEEe
Q 042778 157 IESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSN------FEGSCFLQ 203 (311)
Q Consensus 157 l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~------F~~~~wv~ 203 (311)
|..+|..+-..-.++.|+|.+|+||||||..++-..... -..++|++
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 444554333446799999999999999999887543221 25778887
No 120
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.27 E-value=0.0046 Score=63.68 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=38.9
Q ss_pred CCCccchhhhHHHHHHhhcc-----------cCCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 144 KNQLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
-.++.|.+...++|.+.+.. +-...+-+.++|.+|+|||+||+++++.....|
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f 515 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF 515 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 35677888887777775532 111245688999999999999999999876544
No 121
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.27 E-value=0.00028 Score=65.75 Aligned_cols=51 Identities=12% Similarity=0.253 Sum_probs=42.4
Q ss_pred CCCccchhhhHHHHHHhhccc----CCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAE----SKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+++|.+..++++.+.+... ....++++|+|++|.||||||+++.+.+..
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 448999999999999988642 223689999999999999999999987543
No 122
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.0068 Score=59.29 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=39.4
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+++|.+..+..+.+.+..+. -.....++|..|+||||+|+.++..+.
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3568899999999998886432 245667899999999999999998754
No 123
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.25 E-value=0.0042 Score=63.94 Aligned_cols=50 Identities=16% Similarity=0.335 Sum_probs=39.6
Q ss_pred CCCccchhhhHHHHHHhhccc------CCC-eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAE------SKD-VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~------~~~-~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...++|.+..++.+...+... ++. ..++.++|+.|+|||+||+.++..+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 567889999888888877531 122 45688999999999999999998773
No 124
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.24 E-value=0.001 Score=59.57 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=29.4
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
+..-+.++|.+|+|||.||.++.+++...=-.+.|++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4567899999999999999999999773323456666
No 125
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.22 E-value=0.00096 Score=57.37 Aligned_cols=89 Identities=13% Similarity=0.114 Sum_probs=51.6
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCcCceEEE-ecCccccCCCCChHHHHHHHHHHHhcCCCCCCCH-HHHHHHhCCC
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNFEGSCFL-QNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDI-ALSFRQLSRR 246 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv-~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~-~~l~~~L~~k 246 (311)
.+|.|+|..|.||||++.++...+.......++. .+-.+... .+. ..++.+... ..+.... +.++..|+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~--~~~----~~~i~q~~v-g~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH--ESK----RSLINQREV-GLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccc--cCc----cceeeeccc-CCCccCHHHHHHHHhcCC
Confidence 4789999999999999999888876554444433 21111000 000 001100000 0012223 6777778777
Q ss_pred eEEEEEecCCChHHHHHh
Q 042778 247 KVLIVLDDVTCFRQIKSL 264 (311)
Q Consensus 247 r~LlVLDdV~~~~~l~~l 264 (311)
.=+|++|++.+.+.+...
T Consensus 75 pd~ii~gEird~e~~~~~ 92 (198)
T cd01131 75 PDVILVGEMRDLETIRLA 92 (198)
T ss_pred cCEEEEcCCCCHHHHHHH
Confidence 779999999887766554
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.20 E-value=0.0044 Score=62.12 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=39.7
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..++||.+..++.|...+..+. -...+.++|..|+||||+|+.+.+.+.
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4578999999998888886432 245678999999999999999998864
No 127
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.0097 Score=56.10 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=39.6
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+++|.+...+.+.+.+..+ .-...+.++|+.|+||+|+|..+.+.+
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999898888743 125568899999999999999999875
No 128
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.17 E-value=0.00025 Score=57.03 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.6
Q ss_pred EEEeccCcchhHHHHHHHHHhh
Q 042778 171 LGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~~ 192 (311)
|.|+|..|+|||+||+.+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999988
No 129
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.16 E-value=0.00037 Score=62.33 Aligned_cols=54 Identities=22% Similarity=0.433 Sum_probs=43.4
Q ss_pred CCCccchhhhHHHHHHhhccc---CCCeEEEEEeccCcchhHHHHHHHHHhhccCcC
Q 042778 144 KNQLVGVESRVEEIESLLGAE---SKDVYALGIWGIGGIDRTTIARAIFNKISSNFE 197 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~ 197 (311)
-.++||.+...++|.-.+... ...+-.+.++|++|.||||||..+++.+..++.
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k 81 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK 81 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE
Confidence 467999998888887766532 233778999999999999999999999876654
No 130
>PRK06921 hypothetical protein; Provisional
Probab=97.15 E-value=0.00058 Score=61.52 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=29.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccC-cCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSN-FEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~-F~~~~wv~ 203 (311)
..-+.++|..|+|||.||.++++.+..+ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 5678999999999999999999986654 34456666
No 131
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.15 E-value=0.0012 Score=61.21 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=28.1
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
.-+.++|..|+|||.||.++++.+...--.++|++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67999999999999999999998654433456665
No 132
>PRK08181 transposase; Validated
Probab=97.15 E-value=0.0016 Score=58.71 Aligned_cols=35 Identities=23% Similarity=0.132 Sum_probs=27.4
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
.-+.|+|.+|+|||.||.++.+......-.+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45899999999999999999998654433445555
No 133
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0011 Score=60.40 Aligned_cols=78 Identities=15% Similarity=0.301 Sum_probs=47.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh----ccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCC-CCCH-HHHHH
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI----SSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIV-IPDI-ALSFR 241 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~----~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~-~~~~-~~l~~ 241 (311)
-|+|.++|++|.|||+|++++++++ ...|....-+. +.. . .|+++-..+... ...+ ..+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----ins-----h----sLFSKWFsESgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----INS-----H----SLFSKWFSESGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----Eeh-----h----HHHHHHHhhhhhHHHHHHHHHHH
Confidence 4789999999999999999999973 33455444454 322 2 222222222221 1112 66667
Q ss_pred HhCCCe--EEEEEecCCCh
Q 042778 242 QLSRRK--VLIVLDDVTCF 258 (311)
Q Consensus 242 ~L~~kr--~LlVLDdV~~~ 258 (311)
.+.++. +++.+|.|...
T Consensus 244 Lv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHhCCCcEEEEEeHHHHHH
Confidence 776655 46678888643
No 134
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.11 E-value=0.0086 Score=62.49 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=42.0
Q ss_pred CccchhhhHHHHHHhhcccC-CCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 146 QLVGVESRVEEIESLLGAES-KDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
.++||+.+++.|...+..-. ....++.+.|..|||||+|+++|...+...
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~ 51 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ 51 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc
Confidence 37899999999998886543 347799999999999999999999976554
No 135
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.11 E-value=0.0097 Score=57.72 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=39.7
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-++++|.+..+..+...+..+. -...+.++|..|+||||+|+.+.+.+.
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4578999999998888886431 146688999999999999999998753
No 136
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.10 E-value=0.0021 Score=56.09 Aligned_cols=97 Identities=22% Similarity=0.307 Sum_probs=61.9
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc-cCc-CceEEEecCccccCCCCChHHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS-SNF-EGSCFLQNVREESQRPGGLGFLQQK 221 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~-~~F-~~~~wv~~~~~~s~~~~~~~~l~~~ 221 (311)
-.++||-++.++.+.-... +.+.+-+.|.||+|+||||-+..+++.+- ..| +++.=+. .|. ..++.-+..+
T Consensus 26 l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN----ASd-eRGIDvVRn~ 98 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN----ASD-ERGIDVVRNK 98 (333)
T ss_pred HHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc----Ccc-ccccHHHHHH
Confidence 3578999988887765444 34588899999999999999999999843 334 3333333 444 6666665555
Q ss_pred HHHHHhcCCCCCCCHHHHHHHh-CCCeEEEEEecCCCh
Q 042778 222 LLSKLLQDGIVIPDIALSFRQL-SRRKVLIVLDDVTCF 258 (311)
Q Consensus 222 ll~~l~~~~~~~~~~~~l~~~L-~~kr~LlVLDdV~~~ 258 (311)
|-.-.... -.| .++.=+||||..++.
T Consensus 99 IK~FAQ~k-----------v~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 99 IKMFAQKK-----------VTLPPGRHKIIILDEADSM 125 (333)
T ss_pred HHHHHHhh-----------ccCCCCceeEEEeeccchh
Confidence 42211110 001 245558899999874
No 137
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.08 E-value=0.0026 Score=55.56 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=36.2
Q ss_pred HHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 156 EIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 156 ~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
.|.++|..+-..-.++.|+|.+|.||||||..++......-..++|++
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 455555544344679999999999999999999887655556678887
No 138
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.00056 Score=56.20 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=29.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccC-cCce-EEEecCc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSN-FEGS-CFLQNVR 206 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~-F~~~-~wv~~~~ 206 (311)
..-|+|.||+|+|||||++.+.+.++.. |... +|...++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 4568999999999999999999987665 6543 4444343
No 139
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.07 E-value=0.0017 Score=57.31 Aligned_cols=52 Identities=17% Similarity=0.435 Sum_probs=39.2
Q ss_pred CCCccchhhhHHHHHHhhcc--cCCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 144 KNQLVGVESRVEEIESLLGA--ESKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
.++++|.+...+.|.+=... ......-+.+||..|.|||+|++++.+.....
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 67899999988888752211 11235567889999999999999999986553
No 140
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.07 E-value=0.00071 Score=57.23 Aligned_cols=36 Identities=25% Similarity=0.220 Sum_probs=25.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
..-+.|+|..|+|||.||.++.+....+=..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 456899999999999999999998443323346666
No 141
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.07 E-value=0.011 Score=58.13 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=38.9
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-.+++|.+..++.|...+..+. -.....++|..|+||||+|+.+.+.+
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 3578999988898988886432 24566899999999999999998875
No 142
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.06 E-value=0.0041 Score=54.20 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=34.9
Q ss_pred HHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCc------CceEEEe
Q 042778 156 EIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNF------EGSCFLQ 203 (311)
Q Consensus 156 ~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F------~~~~wv~ 203 (311)
.|..+|..+-..-.++.|+|.+|+|||+||..+.......- ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 44455553434467999999999999999999877644443 5568887
No 143
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.06 E-value=0.0007 Score=56.86 Aligned_cols=36 Identities=28% Similarity=0.599 Sum_probs=31.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
..+|.|.|+.|.||||+|+.+++.+...+...+++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 568999999999999999999999887777777774
No 144
>PRK09183 transposase/IS protein; Provisional
Probab=97.06 E-value=0.0024 Score=57.37 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
...+.|+|..|+|||+||.++.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999998874
No 145
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.05 E-value=0.0038 Score=65.29 Aligned_cols=112 Identities=13% Similarity=0.182 Sum_probs=65.2
Q ss_pred CCCccchhhhHHHHHHhhccc------CCC-eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChH
Q 042778 144 KNQLVGVESRVEEIESLLGAE------SKD-VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLG 216 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~------~~~-~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~ 216 (311)
...++|.+..++.+...+... ++. ...+.++|..|+|||++|+.+.......-...+.+. .+. ... .
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d----~s~-~~~-~ 637 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID----MSE-YME-K 637 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe----chh-hcc-c
Confidence 467899999999999877542 122 457889999999999999999987654333333333 222 111 1
Q ss_pred HHHHHHHHHHhcCCC---CCCCHHHHHHHhCC-CeEEEEEecCCC--hHHHHHhh
Q 042778 217 FLQQKLLSKLLQDGI---VIPDIALSFRQLSR-RKVLIVLDDVTC--FRQIKSLI 265 (311)
Q Consensus 217 ~l~~~ll~~l~~~~~---~~~~~~~l~~~L~~-kr~LlVLDdV~~--~~~l~~l~ 265 (311)
. ....+.+..+ .......+.+.++. ...+|+||+|.. ++.+..|.
T Consensus 638 ~----~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll 688 (852)
T TIGR03346 638 H----SVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLL 688 (852)
T ss_pred c----hHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHH
Confidence 1 1122222222 11111334444433 345999999984 44555443
No 146
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.05 E-value=0.0052 Score=53.35 Aligned_cols=49 Identities=16% Similarity=0.290 Sum_probs=35.7
Q ss_pred HHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 155 EEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 155 ~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
..|..+|..+-..-.++.|.|.+|+||||||..++.....+=..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455566544344679999999999999999999887654434566776
No 147
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.05 E-value=0.012 Score=58.57 Aligned_cols=49 Identities=27% Similarity=0.268 Sum_probs=40.3
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-.+++|.+..+..|...+..+ .-...+.++|..|+||||+|+.+++.+-
T Consensus 15 f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 357899999999999888743 2255788999999999999999999854
No 148
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.03 E-value=0.00049 Score=54.03 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=20.3
Q ss_pred EEEeccCcchhHHHHHHHHHhh
Q 042778 171 LGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~~ 192 (311)
|+|.|+.|+||||||+.+.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999884
No 149
>PRK06526 transposase; Provisional
Probab=97.02 E-value=0.00063 Score=60.85 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=22.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..-+.|+|.+|+|||+||.++.+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH
Confidence 45689999999999999999988743
No 150
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.02 E-value=0.0066 Score=60.49 Aligned_cols=112 Identities=10% Similarity=0.137 Sum_probs=67.0
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCcC--ceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCC
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNFE--GSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLSRR 246 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F~--~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~k 246 (311)
..+.|||-.|+|||.|++++.+.....+. .+.++. ...+...+...+... ....+++.+++-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~-----~~~~f~~~y~~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG-----KGDSFRRRYREM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc-----cHHHHHHHhhcC
Confidence 45899999999999999999998765432 234444 223333443333211 112344444332
Q ss_pred eEEEEEecCCCh---HH----HHHhh----ccCCC----------------------cCCceEEEcCCCChHHHHHHHHH
Q 042778 247 KVLIVLDDVTCF---RQ----IKSLI----GMLRN----------------------CCVKEKYEMKELGDDHALELFSR 293 (311)
Q Consensus 247 r~LlVLDdV~~~---~~----l~~l~----~~~~~----------------------~~~~~~y~v~~L~~~ea~~Lf~~ 293 (311)
=||||||+... +. +-.+. ..... ....-+++|+..+.+.-..++.+
T Consensus 379 -DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 379 -DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred -CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 36788998532 11 11111 10000 44567899999999999999998
Q ss_pred hhcC
Q 042778 294 HAFK 297 (311)
Q Consensus 294 ~af~ 297 (311)
++-.
T Consensus 458 ka~~ 461 (617)
T PRK14086 458 KAVQ 461 (617)
T ss_pred HHHh
Confidence 8754
No 151
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.99 E-value=0.00062 Score=58.26 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.7
Q ss_pred EEEEeccCcchhHHHHHHHHHhhcc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
+|||.|.+|+||||+|+.+...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999998653
No 152
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.99 E-value=0.0026 Score=54.83 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=33.8
Q ss_pred hhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 160 LLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 160 ~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
+|..+-..-.++-|+|.+|.|||++|..+.......-..++|++
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34333334679999999999999999998887655556788887
No 153
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.98 E-value=0.013 Score=59.54 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=39.0
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+++|.+..++.|...+..+. -.....++|+.|+||||+|+.+++.+-
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 468899999999988886431 255678999999999999999998753
No 154
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0011 Score=64.92 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=41.8
Q ss_pred CCCccchhhhHHHHHHhhcccC----------CCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 144 KNQLVGVESRVEEIESLLGAES----------KDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~----------~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
..++=|++..+.+|.+++..-. .-.+=|.++|++|+|||.||++++++..-.|
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF 251 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce
Confidence 3567789999999988775421 1256688999999999999999999976655
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.96 E-value=0.0045 Score=64.51 Aligned_cols=112 Identities=11% Similarity=0.184 Sum_probs=65.6
Q ss_pred CCCccchhhhHHHHHHhhccc------CCC-eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChH
Q 042778 144 KNQLVGVESRVEEIESLLGAE------SKD-VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLG 216 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~------~~~-~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~ 216 (311)
...++|.+..++.|...+... .+. ...+.++|+.|+|||+||+.+++.+...-...+-+. ..+... .+...
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~-~~~~~ 585 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYME-KHTVS 585 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhccc-cccHH
Confidence 578899999999998877521 122 456778999999999999999987643322222232 222111 11111
Q ss_pred HHHHHHHHHHhcCCC---CCCCHHHHHHHhCCCe-EEEEEecCCC--hHHHHHhh
Q 042778 217 FLQQKLLSKLLQDGI---VIPDIALSFRQLSRRK-VLIVLDDVTC--FRQIKSLI 265 (311)
Q Consensus 217 ~l~~~ll~~l~~~~~---~~~~~~~l~~~L~~kr-~LlVLDdV~~--~~~l~~l~ 265 (311)
.+.+..+ .......|.+.++.+. .+|+||+++. ++.++.|.
T Consensus 586 --------~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Ll 632 (821)
T CHL00095 586 --------KLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLL 632 (821)
T ss_pred --------HhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHH
Confidence 1222211 1222244555665544 5999999984 45555554
No 156
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.94 E-value=0.0054 Score=64.13 Aligned_cols=112 Identities=15% Similarity=0.205 Sum_probs=64.9
Q ss_pred CCCccchhhhHHHHHHhhccc------CCC-eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChH
Q 042778 144 KNQLVGVESRVEEIESLLGAE------SKD-VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLG 216 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~------~~~-~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~ 216 (311)
...++|.+..++.|...+... ++. ...+.++|..|+|||+||+++++.....-...+.+. .+. - .
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id----~se-~-~-- 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID----MSE-F-M-- 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE----hHH-h-h--
Confidence 567899999999888877532 122 357889999999999999999987643333333333 211 1 0
Q ss_pred HHHHHHHHHHhcCCCC---CCCHHHHHHHhCC-CeEEEEEecCC--ChHHHHHhh
Q 042778 217 FLQQKLLSKLLQDGIV---IPDIALSFRQLSR-RKVLIVLDDVT--CFRQIKSLI 265 (311)
Q Consensus 217 ~l~~~ll~~l~~~~~~---~~~~~~l~~~L~~-kr~LlVLDdV~--~~~~l~~l~ 265 (311)
.......+.+..+. ......+.+.++. ..-+|+|||+. +++.+..|.
T Consensus 639 --~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll 691 (857)
T PRK10865 639 --EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILL 691 (857)
T ss_pred --hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHH
Confidence 01122233332221 1111234444433 33599999998 455555553
No 157
>PRK06217 hypothetical protein; Validated
Probab=96.94 E-value=0.0048 Score=52.21 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=25.8
Q ss_pred EEEEeccCcchhHHHHHHHHHhhccC-c--CceEEEe
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISSN-F--EGSCFLQ 203 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~~-F--~~~~wv~ 203 (311)
.|.|.|++|.||||||+.+.++..-. | |...|..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~ 39 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP 39 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc
Confidence 58999999999999999999985432 2 4445543
No 158
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.94 E-value=0.016 Score=58.36 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=40.6
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+++|.+..+..|..++..+. -...+.++|..|+||||+|+.+++.+..
T Consensus 15 f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 3578999999999988887432 2456789999999999999999998644
No 159
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.93 E-value=0.0028 Score=65.24 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=40.0
Q ss_pred CCCccchhhhHHHHHHhhccc-----------CCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 144 KNQLVGVESRVEEIESLLGAE-----------SKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
-+++.|++..++++.+++... -...+-+.++|.+|+||||||+++++.....
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~ 239 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY 239 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe
Confidence 456889999998888776321 1224668899999999999999999987544
No 160
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.92 E-value=0.0035 Score=59.69 Aligned_cols=147 Identities=16% Similarity=0.229 Sum_probs=95.6
Q ss_pred CCCccchhhhHHHHHHhhcc--cCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCc--eEEEecCccccCCCCChHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGA--ESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEG--SCFLQNVREESQRPGGLGFLQ 219 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~--~~wv~~~~~~s~~~~~~~~l~ 219 (311)
+..++||+.++..+.+++.. +.+..+.+-|.|-+|.|||.+...++.+....... ++.+... + -....++.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~---s--l~~~~aiF 223 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCT---S--LTEASAIF 223 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeec---c--ccchHHHH
Confidence 77899999999999998864 34557889999999999999999999986655433 2444321 1 13456677
Q ss_pred HHHHHHHhcCCC----CCCCHHHHHHHhCCC--eEEEEEecCCChH-----------HHHHhhccC-------CC-----
Q 042778 220 QKLLSKLLQDGI----VIPDIALSFRQLSRR--KVLIVLDDVTCFR-----------QIKSLIGML-------RN----- 270 (311)
Q Consensus 220 ~~ll~~l~~~~~----~~~~~~~l~~~L~~k--r~LlVLDdV~~~~-----------~l~~l~~~~-------~~----- 270 (311)
..|+..+..... ..+-.+.+..+.... -+|+|||..+... +|..+-+.. +.
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 777777633222 211125666666553 5899999987432 233221110 00
Q ss_pred ----------cCCceEEEcCCCChHHHHHHHHHhh
Q 042778 271 ----------CCVKEKYEMKELGDDHALELFSRHA 295 (311)
Q Consensus 271 ----------~~~~~~y~v~~L~~~ea~~Lf~~~a 295 (311)
.-......-++-+.++-.++|..+.
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 2234566678888888888888774
No 161
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.89 E-value=0.0068 Score=59.23 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=35.5
Q ss_pred CCccchhhhHHHHHHhhc---c-----cCCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 145 NQLVGVESRVEEIESLLG---A-----ESKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~---~-----~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
.++.|.+...+.+..... . +-...+-|.++|++|+|||.+|+++++.....
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 456788766665554221 0 11235678899999999999999999986543
No 162
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.89 E-value=0.0073 Score=55.52 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=35.6
Q ss_pred chhhhHHHHHHhhcccC--CCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 149 GVESRVEEIESLLGAES--KDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 149 Gr~~~~~~l~~~L~~~~--~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
++........+++..-. ...+-+-|+|..|+|||.||.++++.....=..+.|+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 34444444444554211 13457889999999999999999999654433345665
No 163
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.88 E-value=0.0061 Score=49.49 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=27.1
Q ss_pred EEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
++.|+|.+|.||||++..+.......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999888655444566665
No 164
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.88 E-value=0.0024 Score=65.88 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=43.2
Q ss_pred CCCccchhhhHHHHHHhhccc----CCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 144 KNQLVGVESRVEEIESLLGAE----SKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
..+.+|.+...+.|.++|... .....++.++|.+|+||||+|+.+.......|
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 677999999999999888632 12356899999999999999999998766554
No 165
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.87 E-value=0.001 Score=57.51 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=24.4
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
....+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999999876
No 166
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0071 Score=61.59 Aligned_cols=111 Identities=16% Similarity=0.254 Sum_probs=74.4
Q ss_pred CCCccchhhhHHHHHHhhccc------CCC-eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChH
Q 042778 144 KNQLVGVESRVEEIESLLGAE------SKD-VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLG 216 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~------~~~-~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~ 216 (311)
...++|.+..+..+.+.+... ++. .......|+.|+|||.||++++..+...=+..+-+. +|+
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D----MSE------ 559 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID----MSE------ 559 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec----hHH------
Confidence 568899999999998877431 222 567778999999999999999988654333333333 332
Q ss_pred HHHHH-HHHHHhcCCC---CCCCHHHHHHHhCCCeE-EEEEecCC--ChHHHHHhh
Q 042778 217 FLQQK-LLSKLLQDGI---VIPDIALSFRQLSRRKV-LIVLDDVT--CFRQIKSLI 265 (311)
Q Consensus 217 ~l~~~-ll~~l~~~~~---~~~~~~~l~~~L~~kr~-LlVLDdV~--~~~~l~~l~ 265 (311)
.+.+ -.+.+.|..+ ..++-..|.+..+++.| +|.||+|. +++.++-|+
T Consensus 560 -y~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilL 614 (786)
T COG0542 560 -YMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLL 614 (786)
T ss_pred -HHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHH
Confidence 2222 2445555544 22222677777888877 89999997 567676665
No 167
>PRK08233 hypothetical protein; Provisional
Probab=96.82 E-value=0.001 Score=55.76 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=23.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+|+|.|.+|.||||||+.+...+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998754
No 168
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.82 E-value=0.013 Score=55.92 Aligned_cols=99 Identities=17% Similarity=0.152 Sum_probs=61.1
Q ss_pred EEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCeEE
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLSRRKVL 249 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~L 249 (311)
++.|.|+-++|||||++.+....... .+++...... .+-..+ .+.+. .+...-..++.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~----~~~~~l-~d~~~-------------~~~~~~~~~~~y 97 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLR----LDRIEL-LDLLR-------------AYIELKEREKSY 97 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchh----cchhhH-HHHHH-------------HHHHhhccCCce
Confidence 99999999999999997776665444 4444311111 111111 11111 111111127899
Q ss_pred EEEecCCChHHHHHhh------ccCCC------------------cCCceEEEcCCCChHHHHH
Q 042778 250 IVLDDVTCFRQIKSLI------GMLRN------------------CCVKEKYEMKELGDDHALE 289 (311)
Q Consensus 250 lVLDdV~~~~~l~~l~------~~~~~------------------~~~~~~y~v~~L~~~ea~~ 289 (311)
|+||.|.....|+... +..+- .|....+++-||+-.|-+.
T Consensus 98 ifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 98 IFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred EEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 9999999988877653 11101 4567789999999999876
No 169
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.018 Score=57.93 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=39.5
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.++++|.+..++.|...+..+. -...+.++|..|+||||+|+.+...+.
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999988886431 245688999999999999999888754
No 170
>PRK03839 putative kinase; Provisional
Probab=96.81 E-value=0.001 Score=56.09 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=22.6
Q ss_pred EEEEeccCcchhHHHHHHHHHhhccC
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
.|.|.||+|+||||+|+.++++..-.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~ 27 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYE 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 48899999999999999999986443
No 171
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.81 E-value=0.03 Score=55.80 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=39.9
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+++|.+..++.+.+.+..+. -...+.++|..|+||||+|+.+.+.+.
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4578999999999998887532 255677899999999999999988753
No 172
>PRK06762 hypothetical protein; Provisional
Probab=96.81 E-value=0.0011 Score=55.02 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+|.|+|+.|+||||+|+.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 173
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.77 E-value=0.014 Score=58.31 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=39.5
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+++|.+..++.|...+..+ .-...+.++|..|+||||+|+.+.+.+.
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 457899998888888888643 1245678999999999999999998754
No 174
>PTZ00301 uridine kinase; Provisional
Probab=96.76 E-value=0.0012 Score=57.40 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=23.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
+.+|||.|.+|.||||||+.+.+++..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 578999999999999999999877543
No 175
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.75 E-value=0.0017 Score=65.23 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=41.0
Q ss_pred CCCccchhhhHHHHHHhhcccC---CCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAES---KDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~---~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.++++|.+..++++..+|.... ...+++.|+|..|+||||+++.++..+.
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4678999999999998886532 2356899999999999999999998753
No 176
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.74 E-value=0.014 Score=59.41 Aligned_cols=103 Identities=16% Similarity=0.141 Sum_probs=67.8
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLL 223 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll 223 (311)
+.+.|-|.. +.+.|... .+.+.+.|..+.|.|||||+...... ...=..+.|+. ....+.+...+...++
T Consensus 18 ~~~~v~R~r----L~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~~-~~~~~~v~Wls----lde~dndp~rF~~yLi 87 (894)
T COG2909 18 PDNYVVRPR----LLDRLRRA-NDYRLILISAPAGFGKTTLLAQWREL-AADGAAVAWLS----LDESDNDPARFLSYLI 87 (894)
T ss_pred cccccccHH----HHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHHh-cCcccceeEee----cCCccCCHHHHHHHHH
Confidence 445555554 44555432 45899999999999999999998873 33335578998 4443778889999998
Q ss_pred HHHhcCCCC-------------CCCH----HHHHHHhC--CCeEEEEEecCC
Q 042778 224 SKLLQDGIV-------------IPDI----ALSFRQLS--RRKVLIVLDDVT 256 (311)
Q Consensus 224 ~~l~~~~~~-------------~~~~----~~l~~~L~--~kr~LlVLDdV~ 256 (311)
..+..-.+. ..++ ..+..-|. .+..+|||||-.
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyH 139 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYH 139 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEecccc
Confidence 888743221 1111 22222222 367899999975
No 177
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.74 E-value=0.0013 Score=54.65 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=23.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...|.|+|++|+||||+|+.++++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999864
No 178
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.74 E-value=0.011 Score=55.83 Aligned_cols=94 Identities=13% Similarity=0.184 Sum_probs=54.6
Q ss_pred HHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC---
Q 042778 155 EEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI--- 231 (311)
Q Consensus 155 ~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~--- 231 (311)
.++..+|..+-..-.++.|.|.+|+|||||+..++......-..++|+.. ......+... ...+.....
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~-------EEs~~qi~~R-a~rlg~~~~~l~ 140 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG-------EESPEQIKLR-ADRLGISTENLY 140 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEC-------CcCHHHHHHH-HHHcCCCcccEE
Confidence 44555565333345689999999999999999998876555445667761 1122222221 223322111
Q ss_pred --CCCCHHHHHHHhC-CCeEEEEEecCC
Q 042778 232 --VIPDIALSFRQLS-RRKVLIVLDDVT 256 (311)
Q Consensus 232 --~~~~~~~l~~~L~-~kr~LlVLDdV~ 256 (311)
...+++.+.+.+. .+.-+||+|.+.
T Consensus 141 l~~e~~le~I~~~i~~~~~~lVVIDSIq 168 (372)
T cd01121 141 LLAETNLEDILASIEELKPDLVIIDSIQ 168 (372)
T ss_pred EEccCcHHHHHHHHHhcCCcEEEEcchH
Confidence 1122344544443 356689999974
No 179
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.72 E-value=0.0087 Score=62.50 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=40.5
Q ss_pred CCCccchhhhHHHHHHhhccc------CCC-eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAE------SKD-VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~------~~~-~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
...++|.+..+..+.+.+... ++. ..++.++|+.|+|||.||++++..+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 568899999999998877421 122 557899999999999999999887643
No 180
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.72 E-value=0.0013 Score=52.79 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=21.2
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987654
No 181
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.71 E-value=0.0049 Score=56.98 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=34.7
Q ss_pred HHHHhhc-ccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 156 EIESLLG-AESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 156 ~l~~~L~-~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
.|..+|. .+=..-+++-|+|.+|+||||||..++......-..++|++
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3445554 33334678899999999999999988776554445678887
No 182
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.011 Score=58.22 Aligned_cols=123 Identities=15% Similarity=0.265 Sum_probs=72.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHH-HHHhCCC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALS-FRQLSRR 246 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l-~~~L~~k 246 (311)
..=|.+||++|+|||-||++|+|.-.-+|-. +- . -+||...-++.. ..+..+ ++.-..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFis---------VK--G-------PELlNkYVGESE--rAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFIS---------VK--G-------PELLNKYVGESE--RAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEe---------ec--C-------HHHHHHHhhhHH--HHHHHHHHHhhcCC
Confidence 4457899999999999999999998777643 11 1 123333222211 001112 2222347
Q ss_pred eEEEEEecCCCh-------------HHHHHhh----ccCCC----------------------cCCceEEEcCCCChHHH
Q 042778 247 KVLIVLDDVTCF-------------RQIKSLI----GMLRN----------------------CCVKEKYEMKELGDDHA 287 (311)
Q Consensus 247 r~LlVLDdV~~~-------------~~l~~l~----~~~~~----------------------~~~~~~y~v~~L~~~ea 287 (311)
.|+|.+|.++.. ..+..|+ |.... ...+.+.-|..-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 799999998631 1122222 11100 23466777999999999
Q ss_pred HHHHHHhhcCCC---CCCCcHHHhhc
Q 042778 288 LELFSRHAFKQN---NPHIGFEELSS 310 (311)
Q Consensus 288 ~~Lf~~~af~~~---~~~~~~~~l~~ 310 (311)
..+++...=... .+.-+|.+|++
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~ 710 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIAR 710 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhh
Confidence 999998875322 23356777764
No 183
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.70 E-value=0.003 Score=54.25 Aligned_cols=36 Identities=11% Similarity=0.202 Sum_probs=27.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
++++.++|+.|+||||.+..++.+...+=..+..++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 368999999999999999999887555433345555
No 184
>PRK04040 adenylate kinase; Provisional
Probab=96.69 E-value=0.0017 Score=55.40 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=23.0
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+|+|+|++|+||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999875
No 185
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0051 Score=61.40 Aligned_cols=73 Identities=21% Similarity=0.190 Sum_probs=48.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcC-ceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFE-GSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLSRR 246 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~-~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~k 246 (311)
.+-|-|.|..|+|||+||+++++.+...-. +..++.+- ... ...+..+|+.+- ..+...+...
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs--~l~-~~~~e~iQk~l~-------------~vfse~~~~~ 494 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCS--TLD-GSSLEKIQKFLN-------------NVFSEALWYA 494 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEech--hcc-chhHHHHHHHHH-------------HHHHHHHhhC
Confidence 457899999999999999999998764322 22333311 112 334566665542 2344556778
Q ss_pred eEEEEEecCC
Q 042778 247 KVLIVLDDVT 256 (311)
Q Consensus 247 r~LlVLDdV~ 256 (311)
.-+|||||++
T Consensus 495 PSiIvLDdld 504 (952)
T KOG0735|consen 495 PSIIVLDDLD 504 (952)
T ss_pred CcEEEEcchh
Confidence 8999999997
No 186
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.69 E-value=0.0023 Score=52.83 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=29.1
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
.+|-|.|++|.||||||+++.+++...-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 57889999999999999999999877666666664
No 187
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.68 E-value=0.0017 Score=56.07 Aligned_cols=27 Identities=33% Similarity=0.553 Sum_probs=23.9
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...+|+|.|.+|+||||||+.+.....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999999999988654
No 188
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.68 E-value=0.0022 Score=55.56 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=26.9
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
..+.+|||-|.+|.||||+|+.+++.+..+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 457899999999999999999999987755
No 189
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.67 E-value=0.002 Score=63.40 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=42.5
Q ss_pred CCCccchhhhHHHHHHhhc----ccCCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 144 KNQLVGVESRVEEIESLLG----AESKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~----~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
..+++|++..++.|.+.|. .....-+++.++|++|+||||||+.+.+-+...
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 4578999999999999883 223446899999999999999999998865443
No 190
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0023 Score=63.84 Aligned_cols=137 Identities=19% Similarity=0.256 Sum_probs=86.7
Q ss_pred CCCccchhhhHHHHHHhhccc----CCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAE----SKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQ 219 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~ 219 (311)
..+-.|.+...+.|.+.|.-. .-.-+++.++|++|+|||.|++.+++-+...|-. +=+-.+++.++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR-~sLGGvrDEAE--------- 391 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR-ISLGGVRDEAE--------- 391 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE-EecCccccHHH---------
Confidence 678899999999999988532 2235799999999999999999999998777643 22333444332
Q ss_pred HHHHHHHhcCCC-CCCCH--HHHH--HHhCCCeEEEEEecCCChH----------HHHHhhccCCC--------------
Q 042778 220 QKLLSKLLQDGI-VIPDI--ALSF--RQLSRRKVLIVLDDVTCFR----------QIKSLIGMLRN-------------- 270 (311)
Q Consensus 220 ~~ll~~l~~~~~-~~~~~--~~l~--~~L~~kr~LlVLDdV~~~~----------~l~~l~~~~~~-------------- 270 (311)
+-|... -+..+ ..++ ..-+.+.-|++||.|+... -|+-|-|..+.
T Consensus 392 ------IRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 392 ------IRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred ------hccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 111111 12222 2222 1224567799999997421 12222221111
Q ss_pred ------------------cCCceEEEcCCCChHHHHHHHHHhhc
Q 042778 271 ------------------CCVKEKYEMKELGDDHALELFSRHAF 296 (311)
Q Consensus 271 ------------------~~~~~~y~v~~L~~~ea~~Lf~~~af 296 (311)
.....++++.+-+++|-+++-++|-.
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 23446788888888998888777754
No 191
>PRK00625 shikimate kinase; Provisional
Probab=96.66 E-value=0.0015 Score=54.98 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=22.3
Q ss_pred EEEEeccCcchhHHHHHHHHHhhccC
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
.|.|+||+|+||||+++.+.++..-.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~ 27 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLP 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 47899999999999999999886443
No 192
>PRK09354 recA recombinase A; Provisional
Probab=96.62 E-value=0.0067 Score=56.55 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=35.1
Q ss_pred HHHHhhc-ccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 156 EIESLLG-AESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 156 ~l~~~L~-~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
.|..+|. .+=..-+++-|+|.+|+||||||..+.......=..++|+.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 4445565 33344678999999999999999987776544445678887
No 193
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.032 Score=55.35 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=83.8
Q ss_pred CCccchhhhHHHHHHhhcc-----------cCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCce-------EEEecCc
Q 042778 145 NQLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGS-------CFLQNVR 206 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~-------~wv~~~~ 206 (311)
+++=|.+....+|.+.... +-+..+-|..+|++|+||||+|+++++.-...|-.+ -|+-
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vG--- 510 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVG--- 510 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcC---
Confidence 4455688777777755432 123467889999999999999999999876666432 2322
Q ss_pred cccCCCCChHHHHHHHHHHHhcCCC------CCC-----------CH--HHHHHHh------CCCeEEEEEecCCChHHH
Q 042778 207 EESQRPGGLGFLQQKLLSKLLQDGI------VIP-----------DI--ALSFRQL------SRRKVLIVLDDVTCFRQI 261 (311)
Q Consensus 207 ~~s~~~~~~~~l~~~ll~~l~~~~~------~~~-----------~~--~~l~~~L------~~kr~LlVLDdV~~~~~l 261 (311)
.-....++++++.-...+ +++ +. ..|...| ..++-++|+=--+.++++
T Consensus 511 -------eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~I 583 (693)
T KOG0730|consen 511 -------ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMI 583 (693)
T ss_pred -------chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhc
Confidence 112233333333221111 000 00 1111111 123333343333334444
Q ss_pred HHhhccCCCcCCceEEEcCCCChHHHHHHHHHhhcCCCCC-CCcHHHhhc
Q 042778 262 KSLIGMLRNCCVKEKYEMKELGDDHALELFSRHAFKQNNP-HIGFEELSS 310 (311)
Q Consensus 262 ~~l~~~~~~~~~~~~y~v~~L~~~ea~~Lf~~~af~~~~~-~~~~~~l~~ 310 (311)
+.-+-.+ ...+.++.|+.-+.+--+++|+.++=+-+-+ .-++++|+.
T Consensus 584 D~ALlRP--GRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 584 DPALLRP--GRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred CHHHcCC--cccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 4322111 2356777888888888899999998654432 336777764
No 194
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.61 E-value=0.004 Score=55.80 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=39.5
Q ss_pred HHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHh--hccCc----CceEEEecCccccCCCCChHHHHHHHHHH
Q 042778 156 EIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNK--ISSNF----EGSCFLQNVREESQRPGGLGFLQQKLLSK 225 (311)
Q Consensus 156 ~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~--~~~~F----~~~~wv~~~~~~s~~~~~~~~l~~~ll~~ 225 (311)
.|.++|..+-..-.+.=|+|.+|+|||+||..++-. +.... ..++||+ ... .+...++.+ |+..
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid----Te~-~f~~~Rl~~-i~~~ 95 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID----TEG-TFSPERLQQ-IAER 95 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE----SSS-SS-HHHHHH-HHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe----CCC-CCCHHHHHH-Hhhc
Confidence 455666433223568899999999999999877654 33222 2368887 333 566666653 4443
No 195
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.61 E-value=0.0073 Score=54.37 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=55.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc----cCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC-H-
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS----SNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD-I- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~----~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~-~- 236 (311)
-..++|.|-.|+|||||+..+.++.. .+-+.++++- +.++.....++...+...-..... ..++ .
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~----IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~ 144 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA----MGITMEDARFFKDDFEETGALERVVLFLNLANDPTI 144 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE----eccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHH
Confidence 35689999999999999999888743 2235666666 444355666666666543211111 0111 0
Q ss_pred ---------HHHHHHhC---CCeEEEEEecCCChH
Q 042778 237 ---------ALSFRQLS---RRKVLIVLDDVTCFR 259 (311)
Q Consensus 237 ---------~~l~~~L~---~kr~LlVLDdV~~~~ 259 (311)
..+.++++ ++++|+++||+....
T Consensus 145 ~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A 179 (276)
T cd01135 145 ERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYA 179 (276)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHH
Confidence 34445543 689999999997644
No 196
>PRK13947 shikimate kinase; Provisional
Probab=96.60 E-value=0.0017 Score=54.11 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=23.3
Q ss_pred EEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
-|.|+||+|+||||+|+.+.+++.-.|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~ 29 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGF 29 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 488999999999999999999875543
No 197
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.60 E-value=0.0052 Score=58.86 Aligned_cols=86 Identities=9% Similarity=0.115 Sum_probs=50.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC-H-----
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD-I----- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~-~----- 236 (311)
-..++|.|..|+|||||++.+...... +..++.- +.++.....++...++..-..... ..++ .
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi~l----IGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVVGL----VGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCCC--CEEEEEE----EcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 457999999999999999998865433 4555543 333233445555554333111110 1111 0
Q ss_pred -----HHHHHHh--CCCeEEEEEecCCChH
Q 042778 237 -----ALSFRQL--SRRKVLIVLDDVTCFR 259 (311)
Q Consensus 237 -----~~l~~~L--~~kr~LlVLDdV~~~~ 259 (311)
..+.+++ +++++||++||+....
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR~A 265 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTRYA 265 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHHHH
Confidence 2234444 5799999999997543
No 198
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.59 E-value=0.0073 Score=60.43 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=47.1
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhC--
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLS-- 244 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~-- 244 (311)
.-+++.++|++|+||||||..++++-. |. ++=|. .|. ......+-..|...+.... .|.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG--Ys-VvEIN----ASD-eRt~~~v~~kI~~avq~~s-----------~l~ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG--YS-VVEIN----ASD-ERTAPMVKEKIENAVQNHS-----------VLDAD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC--ce-EEEec----ccc-cccHHHHHHHHHHHHhhcc-----------ccccC
Confidence 367999999999999999999998732 11 12222 344 5555666666655544332 121
Q ss_pred CCeEEEEEecCCC
Q 042778 245 RRKVLIVLDDVTC 257 (311)
Q Consensus 245 ~kr~LlVLDdV~~ 257 (311)
.+..-||+|.++-
T Consensus 386 srP~CLViDEIDG 398 (877)
T KOG1969|consen 386 SRPVCLVIDEIDG 398 (877)
T ss_pred CCcceEEEecccC
Confidence 4666789999984
No 199
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.58 E-value=0.0018 Score=45.70 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.9
Q ss_pred EEEEeccCcchhHHHHHHHHHhh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
+|+|.|..|.||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 200
>PF14516 AAA_35: AAA-like domain
Probab=96.57 E-value=0.046 Score=50.89 Aligned_cols=148 Identities=8% Similarity=0.080 Sum_probs=90.8
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc-CcCceEEEecCccccCC-CCChHHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS-NFEGSCFLQNVREESQR-PGGLGFLQQK 221 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~-~F~~~~wv~~~~~~s~~-~~~~~~l~~~ 221 (311)
.+..|.|...-+++.+.|.. .-..+.|.|.-.+|||+|...+.+.... .|.+ +++. +..+... ..+...+.+.
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~-v~id-~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRC-VYID-LQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEE-EEEE-eecCCCcccCCHHHHHHH
Confidence 45678888666667766653 1348899999999999999999888643 4444 3443 2222210 2456666666
Q ss_pred HHHHHhcCCC-----------CCCCH----HHHHHHh---CCCeEEEEEecCCChHH--------HHHhh-------ccC
Q 042778 222 LLSKLLQDGI-----------VIPDI----ALSFRQL---SRRKVLIVLDDVTCFRQ--------IKSLI-------GML 268 (311)
Q Consensus 222 ll~~l~~~~~-----------~~~~~----~~l~~~L---~~kr~LlVLDdV~~~~~--------l~~l~-------~~~ 268 (311)
++..+...-. ..... ..+.+.+ .+++.+|+||+|+..-. +..|+ ...
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 6655543221 11111 4444443 25899999999984221 11111 011
Q ss_pred CC-----------------------cCCceEEEcCCCChHHHHHHHHHhhc
Q 042778 269 RN-----------------------CCVKEKYEMKELGDDHALELFSRHAF 296 (311)
Q Consensus 269 ~~-----------------------~~~~~~y~v~~L~~~ea~~Lf~~~af 296 (311)
.| ..+...++|++++.+|...|..++-.
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~ 215 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGL 215 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhc
Confidence 12 23456788999999999999988743
No 201
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.56 E-value=0.008 Score=50.18 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.7
Q ss_pred EEEEeccCcchhHHHHHHHHHhhccC
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
++.+.|++|.||||++..++......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999876554
No 202
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.55 E-value=0.0018 Score=51.47 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=20.7
Q ss_pred EEEeccCcchhHHHHHHHHHhhccCcCc
Q 042778 171 LGIWGIGGIDRTTIARAIFNKISSNFEG 198 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~~~~~F~~ 198 (311)
|-|+|.+|+||||+|++++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999998888764
No 203
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.55 E-value=0.0092 Score=55.09 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=34.3
Q ss_pred HHHHhhc-ccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 156 EIESLLG-AESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 156 ~l~~~L~-~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
.|..+|. .+=..-+++-|+|.+|+||||||..+.......=..++|++
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 3445554 33344679999999999999999988776544445567886
No 204
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.54 E-value=0.023 Score=52.48 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=37.9
Q ss_pred HHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCc------CceEEEecCccccCCCCChHHHH
Q 042778 156 EIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNF------EGSCFLQNVREESQRPGGLGFLQ 219 (311)
Q Consensus 156 ~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F------~~~~wv~~~~~~s~~~~~~~~l~ 219 (311)
.+..+|..+-..-.++-|+|.+|+|||++|..++-...... ..++|++ ... .+....+.
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~----te~-~f~~~rl~ 154 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID----TEG-TFRPERIE 154 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe----CCC-CcCHHHHH
Confidence 34455543333467889999999999999998876532211 3678887 323 44555544
No 205
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.54 E-value=0.0021 Score=54.22 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=23.3
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
++.+|.|.|++|+||||+|+.+..+.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999998764
No 206
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.53 E-value=0.0074 Score=53.70 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=21.7
Q ss_pred EEEEeccCcchhHHHHHHHHHhhcc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
.|.++|++|+||||+|+.+......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987643
No 207
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.53 E-value=0.0089 Score=61.47 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=39.9
Q ss_pred CCCccchhhhHHHHHHhhccc------CCC-eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAE------SKD-VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~------~~~-~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...++|.+..++.|...+... .+. ...+.++|+.|+|||+||+.++....
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999998877531 122 45789999999999999999988874
No 208
>PRK06547 hypothetical protein; Provisional
Probab=96.51 E-value=0.0026 Score=53.52 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=24.3
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
....+|+|.|++|.||||+|+.+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999998874
No 209
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.51 E-value=0.0045 Score=53.93 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=50.5
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCCH-------
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPDI------- 236 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~~------- 236 (311)
..++|.|..|+|||+|+..+.+..... ..+++. +.++...+.++.+++...-..... ..++.
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~d--~~V~~~----iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDAD--VVVYAL----IGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTTT--EEEEEE----ESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccccc--ceeeee----ccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 468999999999999999998886432 335555 333134455555555333111110 11110
Q ss_pred --------HHHHHHhCCCeEEEEEecCCChH
Q 042778 237 --------ALSFRQLSRRKVLIVLDDVTCFR 259 (311)
Q Consensus 237 --------~~l~~~L~~kr~LlVLDdV~~~~ 259 (311)
+.+++ +++++||++||+....
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dsltr~a 118 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSLTRWA 118 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETHHHHH
T ss_pred hccchhhhHHHhh--cCCceeehhhhhHHHH
Confidence 33333 6899999999986543
No 210
>PRK08356 hypothetical protein; Provisional
Probab=96.50 E-value=0.0086 Score=51.22 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.6
Q ss_pred eEEEEEeccCcchhHHHHHHHH
Q 042778 168 VYALGIWGIGGIDRTTIARAIF 189 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~ 189 (311)
..+|+|+|++|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999983
No 211
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.49 E-value=0.0094 Score=55.73 Aligned_cols=88 Identities=11% Similarity=0.098 Sum_probs=52.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe-cCccccCCCCChHHHHHHHHHHHhcCCC-CCCCH-HHHHHHhC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ-NVREESQRPGGLGFLQQKLLSKLLQDGI-VIPDI-ALSFRQLS 244 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~-~~~~~s~~~~~~~~l~~~ll~~l~~~~~-~~~~~-~~l~~~L~ 244 (311)
-..+.|.|..|.||||+.+++.+.+.......++.. +--+... . +. ..++.+ .+.. ...+. ..++..|+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~-~-~~----~~~i~q--~evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH-R-NK----RSLINQ--REVGLDTLSFANALRAALR 193 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc-c-Cc----cceEEc--cccCCCCcCHHHHHHHhhc
Confidence 468999999999999999999988766555554432 1111000 0 00 000000 0000 11233 67777888
Q ss_pred CCeEEEEEecCCChHHHHH
Q 042778 245 RRKVLIVLDDVTCFRQIKS 263 (311)
Q Consensus 245 ~kr~LlVLDdV~~~~~l~~ 263 (311)
...=.|++|.+.+.+.+..
T Consensus 194 ~~pd~i~vgEird~~~~~~ 212 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVEL 212 (343)
T ss_pred cCCCEEEEeCCCCHHHHHH
Confidence 8888889999988776554
No 212
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.47 E-value=0.017 Score=56.00 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=36.7
Q ss_pred hhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 152 SRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 152 ~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
.-+.++..+|..+-..-.++.|.|.+|+|||||+..+.......=..++|+.
T Consensus 78 TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 78 SGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3445566666544344678999999999999999998777544323466776
No 213
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.46 E-value=0.019 Score=52.61 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=37.4
Q ss_pred CccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 146 QLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
.++|-+.....+..+.....+....+.++|+.|+||||+|.++.+.+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 4567777777777777643333446999999999999999999998654
No 214
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.46 E-value=0.01 Score=56.33 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=67.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLSRRK 247 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 247 (311)
-..+-|||..|.|||-|++++.+...........+. ++. ......++..+... ..+..++.. .-
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~~s-----e~f~~~~v~a~~~~-----~~~~Fk~~y--~~ 176 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----LTS-----EDFTNDFVKALRDN-----EMEKFKEKY--SL 176 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----ccH-----HHHHHHHHHHHHhh-----hHHHHHHhh--cc
Confidence 678999999999999999999999776665333333 111 22222333222221 113344444 22
Q ss_pred EEEEEecCCCh---HH-HHHh-------hcc------------CCC----------cCCceEEEcCCCChHHHHHHHHHh
Q 042778 248 VLIVLDDVTCF---RQ-IKSL-------IGM------------LRN----------CCVKEKYEMKELGDDHALELFSRH 294 (311)
Q Consensus 248 ~LlVLDdV~~~---~~-l~~l-------~~~------------~~~----------~~~~~~y~v~~L~~~ea~~Lf~~~ 294 (311)
=++++||++-. +. -+.+ ... ..+ ...+-++++.+++.+....++.++
T Consensus 177 dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 177 DLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred CeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHH
Confidence 36677776521 11 1111 100 000 344578999999999999999997
Q ss_pred hcCC
Q 042778 295 AFKQ 298 (311)
Q Consensus 295 af~~ 298 (311)
|-..
T Consensus 257 a~~~ 260 (408)
T COG0593 257 AEDR 260 (408)
T ss_pred HHhc
Confidence 7543
No 215
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.012 Score=56.98 Aligned_cols=113 Identities=16% Similarity=0.215 Sum_probs=64.0
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe--cCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhC
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ--NVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLS 244 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~--~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~ 244 (311)
....+.+.|.+|.|||+||..++.. ..|+.+=-+. +.-..++ .....++. ....+.-+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiSpe~miG~sE-saKc~~i~-----------------k~F~DAYk 596 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIISPEDMIGLSE-SAKCAHIK-----------------KIFEDAYK 596 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeChHHccCccH-HHHHHHHH-----------------HHHHHhhc
Confidence 4677889999999999999988854 4565322221 0000111 11111111 22233334
Q ss_pred CCeEEEEEecCCChHHHHHhhccCCC--------------------------------------cCCceEEEcCCCCh-H
Q 042778 245 RRKVLIVLDDVTCFRQIKSLIGMLRN--------------------------------------CCVKEKYEMKELGD-D 285 (311)
Q Consensus 245 ~kr~LlVLDdV~~~~~l~~l~~~~~~--------------------------------------~~~~~~y~v~~L~~-~ 285 (311)
..--.||+||+...-+|-.+.|...+ ..-...|.|+.|+. +
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence 55678899998755444433222111 23456788999887 7
Q ss_pred HHHHHHHHhh-cCCC
Q 042778 286 HALELFSRHA-FKQN 299 (311)
Q Consensus 286 ea~~Lf~~~a-f~~~ 299 (311)
+..+.++..- |...
T Consensus 677 ~~~~vl~~~n~fsd~ 691 (744)
T KOG0741|consen 677 QLLEVLEELNIFSDD 691 (744)
T ss_pred HHHHHHHHccCCCcc
Confidence 7788877754 5543
No 216
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.43 E-value=0.0051 Score=54.05 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=25.3
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
....++||.|..|.|||||++.+...+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45889999999999999999999886543
No 217
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.43 E-value=0.028 Score=56.98 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=34.7
Q ss_pred CCccchhhhHHHHHHhhcccC----------CCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 145 NQLVGVESRVEEIESLLGAES----------KDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~----------~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
.++.|.+...+.+.+.+.... .-.+-|.|+|.+|.||||+|+.+.++....|
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f 213 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF 213 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 355677666555555432110 1133488999999999999999998865544
No 218
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.41 E-value=0.011 Score=52.88 Aligned_cols=86 Identities=20% Similarity=0.146 Sum_probs=51.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEec--CccccCCCCChHHHHHHHHHHHhcCCC-------CCCC--H
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQN--VREESQRPGGLGFLQQKLLSKLLQDGI-------VIPD--I 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~--~~~~s~~~~~~~~l~~~ll~~l~~~~~-------~~~~--~ 236 (311)
-.++||+|..|+|||||++.+..-...... .+++.. +...+ .........++|..++.... ++.. .
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G-~i~f~g~~i~~~~--~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTSG-EILFEGKDITKLS--KEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCCc-eEEEcCcchhhcc--hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 458999999999999999999876544433 333331 11111 11233445556666553322 1111 1
Q ss_pred --HHHHHHhCCCeEEEEEecCC
Q 042778 237 --ALSFRQLSRRKVLIVLDDVT 256 (311)
Q Consensus 237 --~~l~~~L~~kr~LlVLDdV~ 256 (311)
-.+.+.|.-+.=|||.|.--
T Consensus 116 QRi~IARALal~P~liV~DEpv 137 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPV 137 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCch
Confidence 45667788888999999854
No 219
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.40 E-value=0.0029 Score=53.08 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.4
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
++|.+.|++|.||||+|+.+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999988754
No 220
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.36 E-value=0.01 Score=57.33 Aligned_cols=87 Identities=18% Similarity=0.220 Sum_probs=54.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc-CcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H---
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS-NFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I--- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~-~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~--- 236 (311)
-..++|.|-.|+|||||+..+.+.... +-+.++++. +.++......+...++..-..... ..+. .
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~l----iGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAG----VGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEc----CCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 457999999999999999988887653 445666665 333244555565555443211111 1111 0
Q ss_pred ------HHHHHHh---CCCeEEEEEecCCCh
Q 042778 237 ------ALSFRQL---SRRKVLIVLDDVTCF 258 (311)
Q Consensus 237 ------~~l~~~L---~~kr~LlVLDdV~~~ 258 (311)
..+.+++ .++++||++|++...
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 3445555 379999999999654
No 221
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.36 E-value=0.026 Score=54.36 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=25.0
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
...+|.++|.+|+||||+|..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46899999999999999999998876543
No 222
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.017 Score=54.39 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=27.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCc--CceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNF--EGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F--~~~~wv~ 203 (311)
-.+++++|..|+||||++..+..+....+ ..+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 56999999999999999999998754333 3445554
No 223
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.33 E-value=0.038 Score=50.02 Aligned_cols=95 Identities=17% Similarity=0.092 Sum_probs=57.0
Q ss_pred HHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHH-HhcCCC-CCC
Q 042778 157 IESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSK-LLQDGI-VIP 234 (311)
Q Consensus 157 l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~-l~~~~~-~~~ 234 (311)
|..+|..+-..-+++=|+|+.|.||||||..++-.....-..++||+ .-. .+++..+.. +... +..-.. ...
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID----tE~-~l~p~r~~~-l~~~~~d~l~v~~~~ 122 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID----TEH-ALDPERAKQ-LGVDLLDNLLVSQPD 122 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe----CCC-CCCHHHHHH-HHHhhhcceeEecCC
Confidence 34445433345789999999999999999987776555555789998 333 555555433 3333 211111 222
Q ss_pred CH-------HHHHHHhCCCeEEEEEecCCC
Q 042778 235 DI-------ALSFRQLSRRKVLIVLDDVTC 257 (311)
Q Consensus 235 ~~-------~~l~~~L~~kr~LlVLDdV~~ 257 (311)
+. ..+.+....+--|||+|.|-.
T Consensus 123 ~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 123 TGEQQLEIAEKLARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred CHHHHHHHHHHHHHhccCCCCEEEEecCcc
Confidence 22 333333333345999999863
No 224
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.33 E-value=0.0057 Score=52.47 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=28.0
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEE
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFL 202 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv 202 (311)
....+|+|+|++|.||||||+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3467999999999999999999998764332233444
No 225
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.33 E-value=0.0043 Score=52.48 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.6
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
+|+|.|..|.||||||+.+...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988754
No 226
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.32 E-value=0.0032 Score=51.24 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.2
Q ss_pred EEEeccCcchhHHHHHHHHHhhcc
Q 042778 171 LGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
|.|+|++|.||||+|+.+.....-
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~ 25 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 689999999999999999987643
No 227
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.32 E-value=0.003 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.6
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
+|.|.|+.|.||||+|+.+..+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998753
No 228
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.32 E-value=0.005 Score=51.58 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+|.|.|++|.||||+|+.+......
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999998643
No 229
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.32 E-value=0.0026 Score=54.47 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.9
Q ss_pred EEEEeccCcchhHHHHHHHHHhh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
+|||.|..|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 230
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.30 E-value=0.0022 Score=49.38 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=21.6
Q ss_pred EEEeccCcchhHHHHHHHHHhhccCc
Q 042778 171 LGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
|-|+|.+|+|||+||+.+...+..++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 45899999999999999988765443
No 231
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.29 E-value=0.006 Score=55.05 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=20.3
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
+.|.|+|.+|.||||+|+.+...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46889999999999999999887554
No 232
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.28 E-value=0.0029 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.2
Q ss_pred EEEEeccCcchhHHHHHHHHHhh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
+|+|.|.+|.||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 233
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.27 E-value=0.014 Score=56.14 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=49.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H----
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I---- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~---- 236 (311)
-..++|.|..|+|||||++.+.+.... +..++.. +.++......+....+..-..... ..++ .
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~~--d~~v~~~----iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNADA--DVSVIGL----IGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC--CEEEEEE----EecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 457899999999999999998876543 3445443 333233444444444332211100 1111 1
Q ss_pred -----HHHHHHh--CCCeEEEEEecCCCh
Q 042778 237 -----ALSFRQL--SRRKVLIVLDDVTCF 258 (311)
Q Consensus 237 -----~~l~~~L--~~kr~LlVLDdV~~~ 258 (311)
-.+.+++ .++++||++||+...
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 2334444 479999999999654
No 234
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.26 E-value=0.03 Score=50.90 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=27.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccC--cCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSN--FEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~--F~~~~wv~ 203 (311)
.++++|+|.+|+||||++..++...... -..++.++
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 5799999999999999999998875432 12345554
No 235
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.0055 Score=61.18 Aligned_cols=54 Identities=24% Similarity=0.320 Sum_probs=45.9
Q ss_pred CCCccchhhhHHHHHHhhcc----cCCCeEEEEEeccCcchhHHHHHHHHHhhccCcC
Q 042778 144 KNQLVGVESRVEEIESLLGA----ESKDVYALGIWGIGGIDRTTIARAIFNKISSNFE 197 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~ 197 (311)
.++-.|+++..+.|.+.|.- ++-+-+++..+|++|+|||.+|+.++.-+...|-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 67889999999999998853 3345789999999999999999999998777664
No 236
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.25 E-value=0.003 Score=53.17 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.9
Q ss_pred EEEEeccCcchhHHHHHHHHHhh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
+|.|.|++|+||||+|+.+..+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998876
No 237
>PRK13946 shikimate kinase; Provisional
Probab=96.25 E-value=0.0036 Score=53.06 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=24.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
.+.|.+.||.|+||||+++.+.+++.-.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~ 37 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLP 37 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4579999999999999999999987443
No 238
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.24 E-value=0.023 Score=53.07 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=38.7
Q ss_pred HHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHh--hccC----cCceEEEecCccccCCCCChHHHHH
Q 042778 156 EIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNK--ISSN----FEGSCFLQNVREESQRPGGLGFLQQ 220 (311)
Q Consensus 156 ~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~--~~~~----F~~~~wv~~~~~~s~~~~~~~~l~~ 220 (311)
.|-++|..+=..-.++-|+|.+|+|||+|+..++-. .... -..++||+ .-. .+...++.+
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId----TE~-tF~peRl~~ 179 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID----TEG-TFRPDRIVP 179 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE----cCC-CCCHHHHHH
Confidence 445556544344678889999999999999877543 2221 13568888 333 556666544
No 239
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.24 E-value=0.026 Score=52.12 Aligned_cols=61 Identities=7% Similarity=0.163 Sum_probs=38.9
Q ss_pred HHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHh--hcc----CcCceEEEecCccccCCCCChHHHHH
Q 042778 155 EEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNK--ISS----NFEGSCFLQNVREESQRPGGLGFLQQ 220 (311)
Q Consensus 155 ~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~--~~~----~F~~~~wv~~~~~~s~~~~~~~~l~~ 220 (311)
..|..+|..+=..-+++-|+|.+|+||||||..++-. ... .=..++|++ .-. .+...++.+
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId----tE~-~f~~eRi~~ 149 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID----TEG-TFRPDRIRA 149 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE----cCC-CCCHHHHHH
Confidence 3455566544344678999999999999999876542 221 113568887 333 455666543
No 240
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.23 E-value=0.11 Score=47.96 Aligned_cols=145 Identities=13% Similarity=0.125 Sum_probs=82.7
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccC---------------cCceEEEecCcccc
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSN---------------FEGSCFLQNVREES 209 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~---------------F~~~~wv~~~~~~s 209 (311)
.+++|.+..++.+...+..+ .-....-++|..|+||+++|.++.+.+-.. ++...|+.-.-...
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 46889999999888888643 115789999999999999999998874321 22334443110000
Q ss_pred CCCCChHHHHHHHHHHHhcCCC-----CCCCHHHHHHHhC-----CCeEEEEEecCCCh--HHHHHhh----ccCCC---
Q 042778 210 QRPGGLGFLQQKLLSKLLQDGI-----VIPDIALSFRQLS-----RRKVLIVLDDVTCF--RQIKSLI----GMLRN--- 270 (311)
Q Consensus 210 ~~~~~~~~l~~~ll~~l~~~~~-----~~~~~~~l~~~L~-----~kr~LlVLDdV~~~--~~l~~l~----~~~~~--- 270 (311)
. ... -..-+...+.... .++.++.+.+.+. +++=++|+|+++.. ....+|+ .++..
T Consensus 83 g--~~~---~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fI 157 (314)
T PRK07399 83 G--KLI---TASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLI 157 (314)
T ss_pred c--ccc---chhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 0 000 0000001110000 1111233444433 45568888988743 3344443 11122
Q ss_pred -------------cCCceEEEcCCCChHHHHHHHHHhh
Q 042778 271 -------------CCVKEKYEMKELGDDHALELFSRHA 295 (311)
Q Consensus 271 -------------~~~~~~y~v~~L~~~ea~~Lf~~~a 295 (311)
......+++++++.++..+.+.+..
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhh
Confidence 3456789999999999999999874
No 241
>PRK13949 shikimate kinase; Provisional
Probab=96.23 E-value=0.0039 Score=52.23 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=22.6
Q ss_pred EEEEeccCcchhHHHHHHHHHhhccC
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
.|.|+||.|.||||+++.+.+...-.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~ 28 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLS 28 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 58899999999999999999886433
No 242
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.22 E-value=0.0038 Score=53.64 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+|+|-||=|+||||||+.+.+++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999875
No 243
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.20 E-value=0.014 Score=56.34 Aligned_cols=88 Identities=17% Similarity=0.246 Sum_probs=53.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcC-ceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H---
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFE-GSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I--- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~-~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~--- 236 (311)
-..++|.|-.|+|||||+..+......+.. .++++- +.++......+.+.++..-..... ..+. .
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~l----iGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAG----VGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEE----eccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 457899999999999999998777554433 344443 333244556666666543211111 1111 0
Q ss_pred ------HHHHHHh---CCCeEEEEEecCCChH
Q 042778 237 ------ALSFRQL---SRRKVLIVLDDVTCFR 259 (311)
Q Consensus 237 ------~~l~~~L---~~kr~LlVLDdV~~~~ 259 (311)
..+.+++ +++++||++|++....
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A 251 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIFRFT 251 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchHHHH
Confidence 3455555 5799999999997543
No 244
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.021 Score=51.51 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=38.7
Q ss_pred CCccchhhhHHHHHHhhccc-----------CCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 145 NQLVGVESRVEEIESLLGAE-----------SKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
.++=|.++.+++|.+-.... -...+=|-+||.+|.|||-||++|+|+.+..
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT 246 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT 246 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh
Confidence 45668999999998865431 1225567899999999999999999975443
No 245
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.20 E-value=0.0032 Score=55.11 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.7
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
+|||.|..|.||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999988764
No 246
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.18 E-value=0.011 Score=56.96 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=54.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc-cCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H---
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS-SNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I--- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~-~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~--- 236 (311)
-..++|.|-.|+|||+|+..+.+... .+-+.++|+- +.++......+.+.++..-..... ..++ .
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~----iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCG----IGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEE----eccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 45789999999999999998877654 3336667765 433244555666665543111111 1111 0
Q ss_pred ------HHHHHHhC---CCeEEEEEecCCChH
Q 042778 237 ------ALSFRQLS---RRKVLIVLDDVTCFR 259 (311)
Q Consensus 237 ------~~l~~~L~---~kr~LlVLDdV~~~~ 259 (311)
..+.++++ ++++||++||+....
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslTR~A 245 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIFRFI 245 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChHHHH
Confidence 34555554 589999999997543
No 247
>PRK08149 ATP synthase SpaL; Validated
Probab=96.16 E-value=0.018 Score=55.17 Aligned_cols=86 Identities=10% Similarity=0.171 Sum_probs=51.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-------CCCC-----
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-------VIPD----- 235 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-------~~~~----- 235 (311)
-..++|.|..|+|||||+..+...... +..++.. +..+...+..+...++........ +...
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~--dv~v~g~----Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA--DVFVIGL----IGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC--CeEEEEE----EeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 457899999999999999988875432 2323322 222255666666666654221111 1110
Q ss_pred -H---HHHHHHh--CCCeEEEEEecCCChH
Q 042778 236 -I---ALSFRQL--SRRKVLIVLDDVTCFR 259 (311)
Q Consensus 236 -~---~~l~~~L--~~kr~LlVLDdV~~~~ 259 (311)
. ..+.+++ .+|++||++||+....
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr~A 254 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTRYA 254 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHHHH
Confidence 0 2333333 4799999999997543
No 248
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.16 E-value=0.0064 Score=58.91 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=37.7
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...++|++..++.+...+..+ .-|.|.|.+|+|||+||+.+.....
T Consensus 19 ~~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhc
Confidence 456899999999888766543 2488999999999999999998754
No 249
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.15 E-value=0.021 Score=51.85 Aligned_cols=139 Identities=19% Similarity=0.269 Sum_probs=85.3
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc--CcCceEEEecCccccCCCCChHHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS--NFEGSCFLQNVREESQRPGGLGFLQQK 221 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~--~F~~~~wv~~~~~~s~~~~~~~~l~~~ 221 (311)
.++++|.+..++-|.+.+.. ...+....+|++|.|||+-|.++...+.. -|.+++--.|. |. ..++.-+..+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna---Sd-erGisvvr~K 108 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA---SD-ERGISVVREK 108 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc---cc-cccccchhhh
Confidence 46789999988888887764 45889999999999999999999988544 35554332222 22 2332211111
Q ss_pred HHHHHhcCCCCCCCHHHHHHHhC------CCe-EEEEEecCCCh--HHHHHhhccCCC---------------------c
Q 042778 222 LLSKLLQDGIVIPDIALSFRQLS------RRK-VLIVLDDVTCF--RQIKSLIGMLRN---------------------C 271 (311)
Q Consensus 222 ll~~l~~~~~~~~~~~~l~~~L~------~kr-~LlVLDdV~~~--~~l~~l~~~~~~---------------------~ 271 (311)
+ .+...+...+. .+. =.+|||+++.. +.|.+|...... .
T Consensus 109 i-----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 109 I-----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred h-----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 1 11111111110 122 37899999864 457777532211 2
Q ss_pred CCceEEEcCCCChHHHHHHHHHhhcCCC
Q 042778 272 CVKEKYEMKELGDDHALELFSRHAFKQN 299 (311)
Q Consensus 272 ~~~~~y~v~~L~~~ea~~Lf~~~af~~~ 299 (311)
.....|.-++|.+++..+-+..-|=..+
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~ 205 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEG 205 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhC
Confidence 3345678888998888887777765443
No 250
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.15 E-value=0.0092 Score=55.11 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=26.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEE
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFL 202 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv 202 (311)
.+++.+.|.||+||||+|.+..-........+.-+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 47899999999999999999777655554434433
No 251
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.022 Score=54.42 Aligned_cols=25 Identities=20% Similarity=0.077 Sum_probs=22.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..++.++|.+|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998753
No 252
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.12 E-value=0.022 Score=47.71 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=34.5
Q ss_pred ccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 147 LVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 147 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
+||....++++.+.+..-.....-|-|+|..|.||+.+|+.+++...
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~ 47 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP 47 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh
Confidence 47888888888887765333334566999999999999999999643
No 253
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.11 E-value=0.004 Score=50.65 Aligned_cols=23 Identities=17% Similarity=0.553 Sum_probs=20.4
Q ss_pred EEEEeccCcchhHHHHHHHHHhh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
++.|+|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 46789999999999999998873
No 254
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.10 E-value=0.043 Score=53.18 Aligned_cols=95 Identities=13% Similarity=0.196 Sum_probs=54.5
Q ss_pred HHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC--
Q 042778 154 VEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-- 231 (311)
Q Consensus 154 ~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-- 231 (311)
+.++..+|..+-..-.++.|.|.+|+|||||+..+......+=..++|+. . ......+... ...++....
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs----~---Ees~~qi~~r-a~rlg~~~~~l 137 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS----G---EESASQIKLR-AERLGLPSDNL 137 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE----c---cccHHHHHHH-HHHcCCChhcE
Confidence 44566666544334568999999999999999999887654333456766 1 1223333222 223322111
Q ss_pred ---CCCCHHHHHHHhCC-CeEEEEEecCC
Q 042778 232 ---VIPDIALSFRQLSR-RKVLIVLDDVT 256 (311)
Q Consensus 232 ---~~~~~~~l~~~L~~-kr~LlVLDdV~ 256 (311)
...++..+.+.+.. +.-+||+|.+.
T Consensus 138 ~~~~e~~l~~i~~~i~~~~~~lVVIDSIq 166 (446)
T PRK11823 138 YLLAETNLEAILATIEEEKPDLVVIDSIQ 166 (446)
T ss_pred EEeCCCCHHHHHHHHHhhCCCEEEEechh
Confidence 11233444444433 45589999975
No 255
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.10 E-value=0.0048 Score=51.83 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=21.8
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.++.|.|+.|+|||||++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999988643
No 256
>PRK13948 shikimate kinase; Provisional
Probab=96.08 E-value=0.005 Score=52.22 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=24.8
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
..+.|.++||.|+||||+++.+.+++...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~ 37 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLH 37 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 35788999999999999999999986543
No 257
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.07 E-value=0.0086 Score=48.56 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=26.6
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc-cCcCceEEEe
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS-SNFEGSCFLQ 203 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~-~~F~~~~wv~ 203 (311)
++|.|+|..|+|||||++.+.+... ..+...+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 4799999999999999999999855 5565554554
No 258
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.024 Score=55.69 Aligned_cols=123 Identities=17% Similarity=0.183 Sum_probs=69.7
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCC-CChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRP-GGLGFLQQKLLSKLLQDGIVIPDIALSFRQLSR 245 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~ 245 (311)
..+.+-++|++|.|||+||+++++.....|-....-. ...+. .......+ .......+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~----l~sk~vGesek~ir----------------~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE----LLSKWVGESEKNIR----------------ELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH----HhccccchHHHHHH----------------HHHHHHHcC
Confidence 3668999999999999999999997666654321111 00000 00011111 222223345
Q ss_pred CeEEEEEecCCChH-------------HHHHhh----ccC-------------CC---------cCCceEEEcCCCChHH
Q 042778 246 RKVLIVLDDVTCFR-------------QIKSLI----GML-------------RN---------CCVKEKYEMKELGDDH 286 (311)
Q Consensus 246 kr~LlVLDdV~~~~-------------~l~~l~----~~~-------------~~---------~~~~~~y~v~~L~~~e 286 (311)
..+.|.+|+++... ....++ +.. .+ ...+..+.+++-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 67888888876311 111111 000 00 1346788899999999
Q ss_pred HHHHHHHhhcCCCCC---CCcHHHhh
Q 042778 287 ALELFSRHAFKQNNP---HIGFEELS 309 (311)
Q Consensus 287 a~~Lf~~~af~~~~~---~~~~~~l~ 309 (311)
..+.|..+.=+...+ ..++.+|+
T Consensus 415 r~~i~~~~~~~~~~~~~~~~~~~~l~ 440 (494)
T COG0464 415 RLEIFKIHLRDKKPPLAEDVDLEELA 440 (494)
T ss_pred HHHHHHHHhcccCCcchhhhhHHHHH
Confidence 999999987644332 34455544
No 259
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.06 E-value=0.11 Score=48.23 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=34.2
Q ss_pred Cccc-hhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 146 QLVG-VESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 146 ~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.++| .+..++.+...+..+ .-....-++|..|+||||+|+.+.+.+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3566 666667777776532 125667999999999999999998874
No 260
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.05 E-value=0.032 Score=52.13 Aligned_cols=61 Identities=10% Similarity=0.058 Sum_probs=39.0
Q ss_pred HHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc--cC---c-CceEEEecCccccCCCCChHHHH
Q 042778 154 VEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS--SN---F-EGSCFLQNVREESQRPGGLGFLQ 219 (311)
Q Consensus 154 ~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~--~~---F-~~~~wv~~~~~~s~~~~~~~~l~ 219 (311)
...|..+|..+-..-.++-|+|.+|+|||+||..++-... .. - ..++|++ .-. .+...++.
T Consensus 109 ~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId----tE~-~f~~eRl~ 175 (342)
T PLN03186 109 SRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID----TEG-TFRPQRLI 175 (342)
T ss_pred CHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE----CCC-CccHHHHH
Confidence 3455566654434467889999999999999987765321 11 1 2578888 333 45555543
No 261
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.04 E-value=0.016 Score=52.33 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=28.3
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
...+++.++|++|+||||++..++......=..+..+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34789999999999999999999877654422344443
No 262
>PRK04182 cytidylate kinase; Provisional
Probab=96.04 E-value=0.0058 Score=51.06 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=22.0
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
+|.|.|+.|.||||+|+.+.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998853
No 263
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.02 E-value=0.01 Score=47.59 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=22.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-.+|.+.|.-|.||||+++.+.+.+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999874
No 264
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.02 E-value=0.023 Score=54.84 Aligned_cols=88 Identities=17% Similarity=0.245 Sum_probs=53.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcC-ceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H---
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFE-GSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I--- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~-~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~--- 236 (311)
-..++|.|-.|+|||||+..+......+.. .++++- +.++.....++...++..-..... ..++ .
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~al----IGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAG----VGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEE----ecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 457899999999999999998887544333 344443 333244556666666432111110 1111 1
Q ss_pred ------HHHHHHh---CCCeEEEEEecCCChH
Q 042778 237 ------ALSFRQL---SRRKVLIVLDDVTCFR 259 (311)
Q Consensus 237 ------~~l~~~L---~~kr~LlVLDdV~~~~ 259 (311)
-.+.+++ +++++||++||+....
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A 250 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFRFT 250 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhHHH
Confidence 3445555 4589999999997643
No 265
>PRK13975 thymidylate kinase; Provisional
Probab=96.00 E-value=0.0065 Score=51.73 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.6
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..|.|.|+.|+||||+|+.+.+++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999998764
No 266
>PTZ00035 Rad51 protein; Provisional
Probab=96.00 E-value=0.047 Score=50.94 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=28.6
Q ss_pred HHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 154 VEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 154 ~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|..+|..+-..-.++.|+|..|.|||||+..++-.
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 34555666544445779999999999999999887654
No 267
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.98 E-value=0.0045 Score=52.61 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=52.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHh-cCC-C---CCCCH-HHHHH
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLL-QDG-I---VIPDI-ALSFR 241 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~-~~~-~---~~~~~-~~l~~ 241 (311)
-..++|.|..|.|||||++++...+... ...+-+.+..+... .. . ... ++. ... . ...+. +.++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~-~~-~-----~~~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQL-PH-P-----NWV-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCC-CC-C-----CEE-EEEEecCCCCCCCccCHHHHHHH
Confidence 4689999999999999999998876533 23333432222111 00 0 000 000 000 0 11122 66777
Q ss_pred HhCCCeEEEEEecCCChHHHHHh
Q 042778 242 QLSRRKVLIVLDDVTCFRQIKSL 264 (311)
Q Consensus 242 ~L~~kr~LlVLDdV~~~~~l~~l 264 (311)
.++...=.++++.+.+.+.++.+
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHH
Confidence 78888888999999998876654
No 268
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.98 E-value=0.0065 Score=51.00 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=22.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...|.|+|+.|.||||||+.+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34689999999999999999998754
No 269
>PRK14974 cell division protein FtsY; Provisional
Probab=95.96 E-value=0.067 Score=49.83 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=24.1
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
...+|+++|+.|+||||++..++..+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999888876544
No 270
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.95 E-value=0.021 Score=54.80 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=50.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H----
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I---- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~---- 236 (311)
-..++|.|..|+|||||.+.+++.... +.+++.. +.++.....++....+..-..... ..++ .
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~~--dv~V~~l----iGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAEV--DVTVLAL----IGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCCC--CEEEEEE----EccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 568999999999999999999987644 3445554 333233444444433322111100 1111 0
Q ss_pred -----HHHHHHh--CCCeEEEEEecCCChH
Q 042778 237 -----ALSFRQL--SRRKVLIVLDDVTCFR 259 (311)
Q Consensus 237 -----~~l~~~L--~~kr~LlVLDdV~~~~ 259 (311)
..+.+++ .++++||++||+....
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR~A 265 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTRFA 265 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHH
Confidence 2233343 4799999999997543
No 271
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.95 E-value=0.0062 Score=50.71 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.0
Q ss_pred EEEEeccCcchhHHHHHHHHHhhcc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
.|.|+|+.|.||||+|+.+.+++.-
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~ 28 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGY 28 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5788999999999999999988643
No 272
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.93 E-value=0.0095 Score=61.73 Aligned_cols=53 Identities=19% Similarity=0.304 Sum_probs=41.5
Q ss_pred CCCccchhhhHHHHHHhhcc----cCCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 144 KNQLVGVESRVEEIESLLGA----ESKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
..+.+|.+...+.|.+++.. ......++.++|.+|+|||++|+++++.+...|
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 45688999888888876642 122345899999999999999999999876554
No 273
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.93 E-value=0.0057 Score=49.35 Aligned_cols=27 Identities=19% Similarity=0.519 Sum_probs=22.6
Q ss_pred EEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
.+.|+|+.|+|||||++.+.......|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999998765443
No 274
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.92 E-value=0.056 Score=49.13 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=28.5
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhhccCcCc
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKISSNFEG 198 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~ 198 (311)
.++.++.|.|..|.|||||...+.+.+......
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~ 134 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPC 134 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCE
Confidence 458999999999999999999999987766543
No 275
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.91 E-value=0.0058 Score=51.29 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.7
Q ss_pred EEEEEeccCcchhHHHHHHHHHhh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
++++|+|+.|+||||||+.+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999999864
No 276
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.90 E-value=0.028 Score=50.35 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=36.6
Q ss_pred HhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 159 SLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 159 ~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
++|..+-..-+++.|+|.+|+|||++|..+..+...+...++||.
T Consensus 14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344433345789999999999999999999998777788899988
No 277
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.90 E-value=0.057 Score=51.98 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=26.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc--cCcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS--SNFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~--~~F~~~~wv~ 203 (311)
.+++.++|.+|+||||++..++.... ..-..+.+++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999998887654 2223345554
No 278
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.89 E-value=0.028 Score=50.63 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=51.0
Q ss_pred eEEEEEeccCcchhHHHH-HHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC------
Q 042778 168 VYALGIWGIGGIDRTTIA-RAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD------ 235 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA-~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~------ 235 (311)
-..++|.|-.|+|||+|| ..+.++. +-+..+.+..+++ +......+.+.+...-..... ..++
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGe---r~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQ---KASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEeccc---chHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 357899999999999996 5666653 2345433333333 234556666666543211100 0111
Q ss_pred --H---HHHHHHh--CCCeEEEEEecCCChH-HHHHh
Q 042778 236 --I---ALSFRQL--SRRKVLIVLDDVTCFR-QIKSL 264 (311)
Q Consensus 236 --~---~~l~~~L--~~kr~LlVLDdV~~~~-~l~~l 264 (311)
. -.+.+++ +++.+||++||+.... .+.++
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 0 1222222 4799999999997643 34444
No 279
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.88 E-value=0.0052 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.9
Q ss_pred EEEeccCcchhHHHHHHHHHhh
Q 042778 171 LGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~~ 192 (311)
|.|+|+.|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999886
No 280
>PRK14530 adenylate kinase; Provisional
Probab=95.88 E-value=0.0066 Score=52.75 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=21.2
Q ss_pred EEEEeccCcchhHHHHHHHHHhh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.|.|+|++|.||||+|+.+..+.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 281
>PRK05922 type III secretion system ATPase; Validated
Probab=95.88 E-value=0.036 Score=53.22 Aligned_cols=86 Identities=10% Similarity=0.114 Sum_probs=48.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H----
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I---- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~---- 236 (311)
-..++|.|..|+|||||.+.+...... +...+.. +++. ......+..+.......... ..++ .
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~~--d~gvi~l-iGer---g~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSKS--TINVIAL-IGER---GREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC--CceEEEE-eCCC---CchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 346899999999999999998876433 2233322 1111 22334444444433222111 1111 0
Q ss_pred -----HHHHHHh--CCCeEEEEEecCCChH
Q 042778 237 -----ALSFRQL--SRRKVLIVLDDVTCFR 259 (311)
Q Consensus 237 -----~~l~~~L--~~kr~LlVLDdV~~~~ 259 (311)
..+.+++ +++++||++||+....
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR~A 260 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSRWI 260 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHH
Confidence 2344444 4799999999997643
No 282
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.88 E-value=0.25 Score=45.97 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=23.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
...+.++|+.|+||||+|+.+++.+-.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 567889999999999999999987543
No 283
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.88 E-value=0.032 Score=49.04 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=40.6
Q ss_pred CCCccchhhhHHHHHHhhc-c-cCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCc
Q 042778 144 KNQLVGVESRVEEIESLLG-A-ESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEG 198 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~-~-~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~ 198 (311)
-..++|.|...+.+.+=-. . ..-..--|.+||--|.||+.|++++.+.+....-.
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 4578999988877765221 1 11124568899999999999999999998777655
No 284
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.88 E-value=0.016 Score=58.30 Aligned_cols=74 Identities=15% Similarity=0.138 Sum_probs=54.0
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc-CcCceEEEecCccccCCCCChHHHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS-NFEGSCFLQNVREESQRPGGLGFLQQKL 222 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~-~F~~~~wv~~~~~~s~~~~~~~~l~~~l 222 (311)
-+.++|.+..+..|...+... +.+.|+|.+|+||||+|+.+.+.+.. +++...|+.|- ......+.+.+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np------~~~~~~~~~~v 99 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNP------EDPNNPKIRTV 99 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCC------CcchHHHHHHH
Confidence 456889988888877766533 36889999999999999999988644 35777888852 34555666666
Q ss_pred HHHHh
Q 042778 223 LSKLL 227 (311)
Q Consensus 223 l~~l~ 227 (311)
+...+
T Consensus 100 ~~~~G 104 (637)
T PRK13765 100 PAGKG 104 (637)
T ss_pred HHhcC
Confidence 54443
No 285
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.87 E-value=0.0072 Score=50.52 Aligned_cols=84 Identities=21% Similarity=0.332 Sum_probs=50.8
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCcCc-eEEEe--------cCccccCCCCChHHHHHHHHHHHhcCCC---C-C-C
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNFEG-SCFLQ--------NVREESQRPGGLGFLQQKLLSKLLQDGI---V-I-P 234 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~-~~wv~--------~~~~~s~~~~~~~~l~~~ll~~l~~~~~---~-~-~ 234 (311)
+-|.++||.|.||||+.+.+++.+.-.|-. =-+|. .+-+... ......+-..++..+....+ . - .
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~G-E~~FR~~E~~vl~~l~~~~~~ViaTGGG 81 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEG-EEGFRRLETEVLKELLEEDNAVIATGGG 81 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHh-HHHHHHHHHHHHHHHhhcCCeEEECCCc
Confidence 347889999999999999999987776621 11221 0000111 33455555666666665543 1 1 1
Q ss_pred CH--HHHHHHhCCCeEEEEEe
Q 042778 235 DI--ALSFRQLSRRKVLIVLD 253 (311)
Q Consensus 235 ~~--~~l~~~L~~kr~LlVLD 253 (311)
.+ +.-+++|+++-..|.||
T Consensus 82 ~v~~~enr~~l~~~g~vv~L~ 102 (172)
T COG0703 82 AVLSEENRNLLKKRGIVVYLD 102 (172)
T ss_pred cccCHHHHHHHHhCCeEEEEe
Confidence 12 77778887777666665
No 286
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.87 E-value=0.008 Score=51.67 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=22.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+|.|.|++|+||||+|+.+..+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 287
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.87 E-value=0.013 Score=55.83 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=40.2
Q ss_pred CCCccchhhhHHHHHHhhccc--------C----CCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 144 KNQLVGVESRVEEIESLLGAE--------S----KDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~--------~----~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
...++|.+..++.+...+... . ...+.|.++|+.|+||||||+.+...+...|
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 456889998888887766421 0 1146789999999999999999999865544
No 288
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.86 E-value=0.012 Score=56.11 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=38.8
Q ss_pred CCCccchhhhHHHHHHhhccc------------CCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 144 KNQLVGVESRVEEIESLLGAE------------SKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
...++|.+..++.+.-.+... ....+-|.++|++|+||||||+.+...+...|
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 346788888777776544321 11246789999999999999999999876554
No 289
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.85 E-value=0.064 Score=50.92 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=23.5
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..++|.++|..|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999887654
No 290
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.85 E-value=0.018 Score=54.52 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.8
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
+.++|+|+|.+|+||||++..++....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 368999999999999999999987754
No 291
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.85 E-value=0.01 Score=58.74 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=28.1
Q ss_pred HHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 158 ESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 158 ~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.++|....+++.+|||.|..|.||||||+.+...+
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 34444444568999999999999999999998764
No 292
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.85 E-value=0.055 Score=53.14 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=23.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+++|+|.+|+||||++..+......
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999998876443
No 293
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.85 E-value=0.036 Score=51.20 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=34.3
Q ss_pred HHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc--cCc----CceEEEe
Q 042778 154 VEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS--SNF----EGSCFLQ 203 (311)
Q Consensus 154 ~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~--~~F----~~~~wv~ 203 (311)
...|..+|..+-..-.++.|+|.+|+||||||..++.... ... ..++|++
T Consensus 82 ~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyId 137 (316)
T TIGR02239 82 SKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYID 137 (316)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEE
Confidence 3455566654444578999999999999999998775321 111 2458887
No 294
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.83 E-value=0.023 Score=57.22 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=43.2
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccC-cCceEEEecC
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSN-FEGSCFLQNV 205 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~-F~~~~wv~~~ 205 (311)
.++++|.+..+..+...+... +.+.++|+.|+||||+|+++.+.+... |...+.+.|.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 467889998888777766643 255699999999999999999987654 4445555533
No 295
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.83 E-value=0.012 Score=51.80 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.9
Q ss_pred EEEEeccCcchhHHHHHHHHHhh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.|.|.|++|+||||+|+.+.+++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998875
No 296
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.088 Score=46.90 Aligned_cols=50 Identities=16% Similarity=0.301 Sum_probs=36.7
Q ss_pred CCccchhhhHHHHHHhhcccC-----------CCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 145 NQLVGVESRVEEIESLLGAES-----------KDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
+++=|.+..++++.+.+...- ...+=+..||++|.|||-+|++.+.+...
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a 231 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA 231 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc
Confidence 456688889999888654211 12456888999999999999998775433
No 297
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.81 E-value=0.0086 Score=51.78 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=25.2
Q ss_pred hcccCCCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 161 LGAESKDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 161 L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
+..+....+.+.|+|.+|+|||||++.+.+.
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3334456789999999999999999998764
No 298
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.81 E-value=0.07 Score=48.03 Aligned_cols=87 Identities=9% Similarity=0.021 Sum_probs=52.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCH-HHHHHHhCCC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDI-ALSFRQLSRR 246 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~-~~l~~~L~~k 246 (311)
-.++.|.|..|.||||+++++.+.+...-...+.+.+..+..- .+. .++.-....-.+. ..++..|+..
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~--~~~--------~q~~v~~~~~~~~~~~l~~~lR~~ 149 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI--PGI--------NQVQVNEKAGLTFARGLRAILRQD 149 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC--CCc--------eEEEeCCcCCcCHHHHHHHHhccC
Confidence 4589999999999999999988876542223344443222111 110 0000000001123 7788888888
Q ss_pred eEEEEEecCCChHHHHHh
Q 042778 247 KVLIVLDDVTCFRQIKSL 264 (311)
Q Consensus 247 r~LlVLDdV~~~~~l~~l 264 (311)
.=.|++++|.+.+....+
T Consensus 150 PD~i~vgEiR~~e~a~~~ 167 (264)
T cd01129 150 PDIIMVGEIRDAETAEIA 167 (264)
T ss_pred CCEEEeccCCCHHHHHHH
Confidence 889999999998765543
No 299
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.80 E-value=0.011 Score=49.77 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=24.6
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
...+++|+|..|+|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999987654
No 300
>PRK05439 pantothenate kinase; Provisional
Probab=95.80 E-value=0.015 Score=53.51 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=24.3
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...-+|||.|.+|+||||+|+.+...+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4478999999999999999998887654
No 301
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.80 E-value=0.01 Score=53.64 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=26.4
Q ss_pred HHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 154 VEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 154 ~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...+.+++.. .-+-+.++|..|+|||++++....+..
T Consensus 22 ~~~ll~~l~~---~~~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 22 YSYLLDLLLS---NGRPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp HHHHHHHHHH---CTEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred HHHHHHHHHH---cCCcEEEECCCCCchhHHHHhhhccCC
Confidence 3445554442 245678999999999999999887643
No 302
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.80 E-value=0.033 Score=51.56 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=49.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H----
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I---- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~---- 236 (311)
-..++|.|..|.|||||.+.+....... ..++.. +..+...+..+....+..-..... ..++ .
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~~~--~~vi~~----iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTTAD--VNVIAL----IGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCCC--EEEEEE----EecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 4578999999999999999888765432 223322 222134555555555443211100 0111 0
Q ss_pred -----HHHHHHh--CCCeEEEEEecCCChH
Q 042778 237 -----ALSFRQL--SRRKVLIVLDDVTCFR 259 (311)
Q Consensus 237 -----~~l~~~L--~~kr~LlVLDdV~~~~ 259 (311)
-.+.+++ ++|.+||++||+....
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr~a 172 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTRFA 172 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchHHH
Confidence 2233333 4799999999987643
No 303
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.79 E-value=0.0063 Score=50.67 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=18.6
Q ss_pred EEEEeccCcchhHHHHHHHH
Q 042778 170 ALGIWGIGGIDRTTIARAIF 189 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~ 189 (311)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 304
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.78 E-value=0.022 Score=54.87 Aligned_cols=86 Identities=15% Similarity=0.179 Sum_probs=48.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC----CCCC--H-----
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI----VIPD--I----- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~~--~----- 236 (311)
-..++|+|..|+|||||++.+...... ..+++++... . ...+..+....+.......- ..++ .
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~p-d~gvv~liGe----r-grev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~ 238 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADAF-DTVVIALVGE----R-GREVREFLEDTLADNLKKAVAVVATSDESPMMRRLA 238 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC-Ceeeeeeccc----C-CccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHH
Confidence 457999999999999999888765332 2233443210 1 34455554444443321110 1111 0
Q ss_pred ----HHHHHHh--CCCeEEEEEecCCChH
Q 042778 237 ----ALSFRQL--SRRKVLIVLDDVTCFR 259 (311)
Q Consensus 237 ----~~l~~~L--~~kr~LlVLDdV~~~~ 259 (311)
-.+.+++ +++++||++||+....
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~DslTr~A 267 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSVTRFA 267 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchHHHH
Confidence 2233333 4799999999997543
No 305
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.78 E-value=0.015 Score=51.62 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=30.0
Q ss_pred hHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 153 RVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 153 ~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
...++.+.|.....+..+|||.|.+|.||+||.-++...+..
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~ 55 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRE 55 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhh
Confidence 344555555555556889999999999999999988776443
No 306
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.76 E-value=0.0077 Score=51.70 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=23.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-.+|+|+|..|+||||||+.+.....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46899999999999999999998753
No 307
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=95.76 E-value=0.033 Score=54.25 Aligned_cols=86 Identities=23% Similarity=0.125 Sum_probs=51.5
Q ss_pred eEEEEEeccCcchhHHHH-HHHHHhhccCcCc-eEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC-H---
Q 042778 168 VYALGIWGIGGIDRTTIA-RAIFNKISSNFEG-SCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD-I--- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA-~~v~~~~~~~F~~-~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~-~--- 236 (311)
-..++|.|-.|+|||||| ..+.++.. -+. ++++. +.++......+.+.+...-..... ..++ .
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~q~~--~dv~~V~~~----IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r 235 (497)
T TIGR03324 162 GQRELILGDRQTGKTAIAIDTILNQKG--RNVLCIYCA----IGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQ 235 (497)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHHhcC--CCcEEEEEE----eccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHH
Confidence 457899999999999997 47777643 344 45554 444244556666665543211111 1111 0
Q ss_pred -------HHHHHHh--CCCeEEEEEecCCChH
Q 042778 237 -------ALSFRQL--SRRKVLIVLDDVTCFR 259 (311)
Q Consensus 237 -------~~l~~~L--~~kr~LlVLDdV~~~~ 259 (311)
..+-+++ +++++|||+||+....
T Consensus 236 ~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A 267 (497)
T TIGR03324 236 YIAPYAATSIGEHFMEQGRDVLIVYDDLTQHA 267 (497)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcChhHHH
Confidence 3344444 5799999999997543
No 308
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.76 E-value=0.011 Score=49.96 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=30.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
.+++.|+|+.|+|||||++.+..+....|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 468899999999999999999999988886555544
No 309
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.74 E-value=0.0074 Score=51.17 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=21.7
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.++.|+|+.|.|||||++.++....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3789999999999999999977643
No 310
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.74 E-value=0.0092 Score=49.41 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.3
Q ss_pred EEEEeccCcchhHHHHHHHHHhh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
+|+|.|+.|.||||+|+.+.++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 78999999999999999998875
No 311
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.73 E-value=0.023 Score=56.02 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=50.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCc-CceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCC--------H-H
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNF-EGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPD--------I-A 237 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F-~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~--------~-~ 237 (311)
-.-.+|+|.+|+|||||++.+.+.+.... ++.+++.-+.+- ...+..+.+.+-..+.....+... + -
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgER---peEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDER---PEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCc---hhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999875433 444455433332 222333333221111111111100 0 2
Q ss_pred HHHHHh--CCCeEEEEEecCCChHH
Q 042778 238 LSFRQL--SRRKVLIVLDDVTCFRQ 260 (311)
Q Consensus 238 ~l~~~L--~~kr~LlVLDdV~~~~~ 260 (311)
.+-++| .++.+||+||++.....
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR~Ar 517 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITRLGR 517 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchHHHH
Confidence 333444 57999999999975543
No 312
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.72 E-value=0.054 Score=54.17 Aligned_cols=108 Identities=15% Similarity=0.237 Sum_probs=77.4
Q ss_pred CCCccchhhhHHHHHHhhcc--cC-CCeEEEEEeccCcchhHHHHHHHHHhhc--------cCcCceEEEecCccccCCC
Q 042778 144 KNQLVGVESRVEEIESLLGA--ES-KDVYALGIWGIGGIDRTTIARAIFNKIS--------SNFEGSCFLQNVREESQRP 212 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~--~~-~~~~vi~I~GmgGiGKTtLA~~v~~~~~--------~~F~~~~wv~~~~~~s~~~ 212 (311)
+..+-+|+.+..+|...+.. .. ..-+.+-|.|.+|.|||..+..|.+.+. ..|+ .+.|...+ -
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~-----l 468 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLR-----L 468 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEccee-----e
Confidence 56788999999999998864 22 2245899999999999999999998533 1243 24454322 3
Q ss_pred CChHHHHHHHHHHHhcCCCC-CCCHHHHHHHhC-----CCeEEEEEecCCC
Q 042778 213 GGLGFLQQKLLSKLLQDGIV-IPDIALSFRQLS-----RRKVLIVLDDVTC 257 (311)
Q Consensus 213 ~~~~~l~~~ll~~l~~~~~~-~~~~~~l~~~L~-----~kr~LlVLDdV~~ 257 (311)
.....+...|+..+.++... ...++.|..++. .+.++|++|+++.
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~ 519 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDI 519 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHH
Confidence 45788899999998887662 223366776665 4668999999864
No 313
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.70 E-value=0.01 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.8
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+.|.|.+|+|||+||+++++...
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999998653
No 314
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.70 E-value=0.038 Score=54.07 Aligned_cols=141 Identities=16% Similarity=0.208 Sum_probs=81.7
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLL 223 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll 223 (311)
.+++||.+..+..|...|..+.- ...-...|.-|+||||+|+.++.-+...=.. ... .++-....+.|-
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri-~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~---------~~e-PC~~C~~Ck~I~ 83 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRI-AHAYLFSGPRGVGKTTIARILAKALNCENGP---------TAE-PCGKCISCKEIN 83 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcc-hhhhhhcCCCCcCchhHHHHHHHHhcCCCCC---------CCC-cchhhhhhHhhh
Confidence 35679999999999988875421 4455678999999999999999874332100 111 222222222221
Q ss_pred HH-------HhcCCC-CCCCHHHHHHHhCC-----CeEEEEEecCCC--hHHHHHhhcc----CCC--------------
Q 042778 224 SK-------LLQDGI-VIPDIALSFRQLSR-----RKVLIVLDDVTC--FRQIKSLIGM----LRN-------------- 270 (311)
Q Consensus 224 ~~-------l~~~~~-~~~~~~~l~~~L~~-----kr~LlVLDdV~~--~~~l~~l~~~----~~~-------------- 270 (311)
.. +....+ .+++++.|.+.... +-=+.|+|+|+- ...+.+|+.. +..
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 11 000000 22333555555432 333789999984 4567777522 111
Q ss_pred ---cCCceEEEcCCCChHHHHHHHHHhh
Q 042778 271 ---CCVKEKYEMKELGDDHALELFSRHA 295 (311)
Q Consensus 271 ---~~~~~~y~v~~L~~~ea~~Lf~~~a 295 (311)
......|..+.|+.++-...+..-+
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~ 191 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAIL 191 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHH
Confidence 4456789999999987666665544
No 315
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.69 E-value=0.18 Score=44.69 Aligned_cols=124 Identities=11% Similarity=0.117 Sum_probs=74.4
Q ss_pred CCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-CCCCH-----HH
Q 042778 165 SKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-VIPDI-----AL 238 (311)
Q Consensus 165 ~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-~~~~~-----~~ 238 (311)
.++-+++.++|.-|.|||++++++.....+.=-+.+.+. ........+...++..+..... ..... ..
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~------~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~ 121 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID------KPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRE 121 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec------CcchhHHHHHHHHHHHhccCccchhHHHHHHHHHH
Confidence 345679999999999999999966554443222222332 2145566677777777766222 33322 22
Q ss_pred HHHH-hCCCe-EEEEEecCCC--hHHHHHhh---cc------C-CC--------------------cCCceE-EEcCCCC
Q 042778 239 SFRQ-LSRRK-VLIVLDDVTC--FRQIKSLI---GM------L-RN--------------------CCVKEK-YEMKELG 283 (311)
Q Consensus 239 l~~~-L~~kr-~LlVLDdV~~--~~~l~~l~---~~------~-~~--------------------~~~~~~-y~v~~L~ 283 (311)
|... -+++| +.++.||..+ .+.++.+. +. + .. .....+ |+++|++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 2222 24677 9999999874 34555552 00 0 00 112233 9999999
Q ss_pred hHHHHHHHHHh
Q 042778 284 DDHALELFSRH 294 (311)
Q Consensus 284 ~~ea~~Lf~~~ 294 (311)
.++.-.++.++
T Consensus 202 ~~~t~~yl~~~ 212 (269)
T COG3267 202 EAETGLYLRHR 212 (269)
T ss_pred hHHHHHHHHHH
Confidence 99887777665
No 316
>PRK04296 thymidine kinase; Provisional
Probab=95.68 E-value=0.013 Score=49.90 Aligned_cols=34 Identities=9% Similarity=-0.152 Sum_probs=25.5
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCcCceEEE
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNFEGSCFL 202 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv 202 (311)
.++.|+|..|.||||+|..+..+...+-..++.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 4678899999999999999888865443333333
No 317
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.67 E-value=0.026 Score=47.67 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=22.5
Q ss_pred EEEEeccCcchhHHHHHHHHHhhcc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
+|.|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998643
No 318
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.66 E-value=0.0093 Score=49.15 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.7
Q ss_pred EEEEeccCcchhHHHHHHHHHhhccC
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
+|.|-|.+|+||||+|+.+++.+.-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~ 27 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK 27 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc
Confidence 68999999999999999999985443
No 319
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.65 E-value=0.0085 Score=44.08 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=21.6
Q ss_pred EEEEeccCcchhHHHHHHHHHhhcc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
++.+.|.+|+||||++..+...++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999988654
No 320
>PRK15453 phosphoribulokinase; Provisional
Probab=95.64 E-value=0.017 Score=52.16 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.1
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
....+|+|.|-+|.||||+|+.+.+.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999999987653
No 321
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.64 E-value=0.029 Score=45.53 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=26.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
-.+++|.|..|.|||||++.+...... ..+.+++.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~ 60 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWG 60 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEEC
Confidence 458999999999999999998875432 24444443
No 322
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.62 E-value=0.018 Score=53.42 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=30.0
Q ss_pred HHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 155 EEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 155 ~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+.+.+........+|+|.|.+|+|||||+..+...+..
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3455555433456889999999999999999988776543
No 323
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.62 E-value=0.022 Score=49.80 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=20.9
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.|+|+|-||+||||+|..+..++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~ 25 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL 25 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH
Confidence 689999999999999999777643
No 324
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.62 E-value=0.015 Score=52.58 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=28.2
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
++|+|+|.+|+|||||+..+...++... .++-+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999877665 455554
No 325
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.62 E-value=0.063 Score=50.72 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=26.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc--cCcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS--SNFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~--~~F~~~~wv~ 203 (311)
-++|.++|+.|+||||-...++.+.. ..=..+.+|+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 78999999999999987766666643 3334455665
No 326
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.62 E-value=0.017 Score=52.63 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=22.7
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
....+|||.|..|+||||+|+.+...+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 347899999999999999998775544
No 327
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.60 E-value=0.0091 Score=49.99 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEeccCcchhHHHHHHHHHhhcc
Q 042778 171 LGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
|.|.|..|+|||||.+.+.+.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999988643
No 328
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.59 E-value=0.013 Score=51.43 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHH
Q 042778 168 VYALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~ 190 (311)
-.++||+|..|+|||||++.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 45899999999999999999865
No 329
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.01 Score=50.11 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEeccCcchhHHHHHHHHHh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.|.|.|.+|.||||+|+.+.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999998
No 330
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.54 E-value=0.047 Score=49.34 Aligned_cols=145 Identities=14% Similarity=0.161 Sum_probs=86.5
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLL 223 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll 223 (311)
.+.++|-... +++...+......-+.+.|+|+.|+|||+-++.+++.. ...|+.. .+. .+....++..+.
T Consensus 71 ~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~-----p~~~l~~---~~p-~~~a~~~i~~i~ 140 (297)
T COG2842 71 APDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN-----PNALLIE---ADP-SYTALVLILIIC 140 (297)
T ss_pred cccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC-----ccceeec---CCh-hhHHHHHHHHHH
Confidence 4566766543 33444444333334488999999999999999888765 2344431 333 555666666666
Q ss_pred HHHhcCCC-CCCCH-HHHHHHhCCCeEEEEEecCCC--hHHHHHhhccCCC-------cCCceEEEcCCCChHHHHHHHH
Q 042778 224 SKLLQDGI-VIPDI-ALSFRQLSRRKVLIVLDDVTC--FRQIKSLIGMLRN-------CCVKEKYEMKELGDDHALELFS 292 (311)
Q Consensus 224 ~~l~~~~~-~~~~~-~~l~~~L~~kr~LlVLDdV~~--~~~l~~l~~~~~~-------~~~~~~y~v~~L~~~ea~~Lf~ 292 (311)
........ ...+. ..+..++++..=+|+.|+.+. ...++.+....+- .|.......-.=+..+..++|.
T Consensus 141 ~~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLvG~prL~~~l~~~~~~~~rl~s 220 (297)
T COG2842 141 AAAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIGVVLVGMPRLFKVLRRPEDELSRLYS 220 (297)
T ss_pred HHHhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCceEEEecChHHHhccccchHHHHHHHH
Confidence 66555443 33333 566666788888899998875 3455555432222 2222222222234567788888
Q ss_pred HhhcCC
Q 042778 293 RHAFKQ 298 (311)
Q Consensus 293 ~~af~~ 298 (311)
+.+|+.
T Consensus 221 rv~v~~ 226 (297)
T COG2842 221 RVRVGK 226 (297)
T ss_pred HhhhHh
Confidence 888864
No 331
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.53 E-value=0.021 Score=51.16 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=27.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
-.++.|.|.+|.||||+|..+.......=+.+++++
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 568999999999999999987665323324556666
No 332
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.53 E-value=0.0097 Score=49.10 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.9
Q ss_pred EEEEeccCcchhHHHHHHHHHhhccC
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
+++|+|..|+|||||+..+...++..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999986554
No 333
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.53 E-value=0.039 Score=52.81 Aligned_cols=85 Identities=13% Similarity=0.173 Sum_probs=47.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H----
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I---- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~---- 236 (311)
-..++|.|..|.|||||.+.+.+.... +..++.. +..+...+..+...++..-..... ..++ .
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~~--~~~vi~~----iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTEA--DVVVVGL----IGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEE----EecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 457999999999999999988876543 2333332 222123344444443322111000 1111 0
Q ss_pred -----HHHHHHh--CCCeEEEEEecCCCh
Q 042778 237 -----ALSFRQL--SRRKVLIVLDDVTCF 258 (311)
Q Consensus 237 -----~~l~~~L--~~kr~LlVLDdV~~~ 258 (311)
..+.+++ +++++||++||+...
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dsltr~ 239 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSLTRF 239 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChHHH
Confidence 2333443 479999999999654
No 334
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.51 E-value=0.022 Score=56.82 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=37.2
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
++..+-|.+-.+.|.++.......-.+|.|+|+.|.||||||+.++.++..
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 455566665556555554444444668999999999999999999998754
No 335
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.50 E-value=0.017 Score=52.30 Aligned_cols=40 Identities=20% Similarity=0.344 Sum_probs=32.2
Q ss_pred HHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 154 VEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 154 ~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-.++...|.....+..+|||.|.||+||+||.-++-.++.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~ 76 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELR 76 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHH
Confidence 3456666666667789999999999999999998877643
No 336
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.49 E-value=0.01 Score=48.47 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.3
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
++.|+|.+|.||||||+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 337
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.49 E-value=0.16 Score=52.23 Aligned_cols=93 Identities=15% Similarity=0.101 Sum_probs=53.2
Q ss_pred HHHHHHhhc-ccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-
Q 042778 154 VEEIESLLG-AESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI- 231 (311)
Q Consensus 154 ~~~l~~~L~-~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~- 231 (311)
+..|..+|. .+=..-+++-|+|..|+||||||..+.......=..++|+. ... ..+. ..+.+++....
T Consensus 45 i~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId----~E~-t~~~-----~~A~~lGvDl~~ 114 (790)
T PRK09519 45 SIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID----AEH-ALDP-----DYAKKLGVDTDS 114 (790)
T ss_pred cHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC----Ccc-chhH-----HHHHHcCCChhH
Confidence 345556665 33344678889999999999999876655333335568887 222 2332 23334432211
Q ss_pred ----CCCCH----HHHHHHhCC-CeEEEEEecCC
Q 042778 232 ----VIPDI----ALSFRQLSR-RKVLIVLDDVT 256 (311)
Q Consensus 232 ----~~~~~----~~l~~~L~~-kr~LlVLDdV~ 256 (311)
..... ..+...++. +--|||+|-|-
T Consensus 115 llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 115 LLVSQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred eEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 11121 344444444 45589999975
No 338
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.051 Score=52.90 Aligned_cols=47 Identities=26% Similarity=0.337 Sum_probs=33.8
Q ss_pred CCCccchhhh---HHHHHHhhcccC------CC-eEEEEEeccCcchhHHHHHHHHH
Q 042778 144 KNQLVGVESR---VEEIESLLGAES------KD-VYALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 144 ~~~~vGr~~~---~~~l~~~L~~~~------~~-~~vi~I~GmgGiGKTtLA~~v~~ 190 (311)
.++.-|.|+. +++|.+.|.... ++ .+=|.++|++|.|||-||++++-
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAG 359 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAG 359 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhc
Confidence 4567788764 555566665421 12 56788999999999999999854
No 339
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.45 E-value=0.021 Score=54.69 Aligned_cols=50 Identities=12% Similarity=0.168 Sum_probs=35.1
Q ss_pred CCCccchhhhHHHHHHhhc-------cc-C--C----CeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLG-------AE-S--K----DVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~-------~~-~--~----~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...++|.+..++.+...+. .. . + ..+.+.++|.+|+|||+||+.++....
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3467899888777754331 10 0 0 135689999999999999999987643
No 340
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.45 E-value=0.033 Score=53.66 Aligned_cols=86 Identities=13% Similarity=0.129 Sum_probs=48.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H----
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I---- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~---- 236 (311)
-..++|+|..|.|||||++.+..... .+..++.. +..+......+...++..-..... ..++ .
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~~--~dv~V~g~----Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFTE--ADIIVVGL----IGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC--CCEEEEEE----eCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 45799999999999999998876432 23333322 222134455555554433211111 1111 0
Q ss_pred -----HHHHHHh--CCCeEEEEEecCCChH
Q 042778 237 -----ALSFRQL--SRRKVLIVLDDVTCFR 259 (311)
Q Consensus 237 -----~~l~~~L--~~kr~LlVLDdV~~~~ 259 (311)
..+.+++ +++++||++||+....
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslTR~A 271 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLTRFA 271 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchhHHH
Confidence 2233444 5799999999997543
No 341
>PLN02924 thymidylate kinase
Probab=95.44 E-value=0.066 Score=46.85 Aligned_cols=28 Identities=7% Similarity=0.041 Sum_probs=24.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
-..|.|-|.-|.||||+|+.+.+.+...
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~ 43 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGL 43 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5689999999999999999999986554
No 342
>PRK13768 GTPase; Provisional
Probab=95.44 E-value=0.021 Score=51.11 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..++.|.|.||+||||++..+....
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 3578999999999999998877654
No 343
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.41 E-value=0.011 Score=53.32 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=20.9
Q ss_pred EEEEEeccCcchhHHHHHHHHHhh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
+.|+|+|=||+||||+|..++.-+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~L 24 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAAL 24 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHH
Confidence 478999999999999999887754
No 344
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.41 E-value=0.031 Score=51.28 Aligned_cols=87 Identities=20% Similarity=0.157 Sum_probs=53.4
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCc--CceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCH-HHHHHHhCC
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNF--EGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDI-ALSFRQLSR 245 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F--~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~-~~l~~~L~~ 245 (311)
+.+.|+|..|.||||+++++.+.+.... ...+-+.+..+..-...+... +. ......+. ..++..|+.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~--------~~-~~~~~~~~~~~l~~aLR~ 203 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ--------LR-TSDDAISMTRLLKATLRL 203 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE--------EE-ecCCCCCHHHHHHHHhcC
Confidence 4577999999999999999998876532 223334433332110001000 00 00112244 778888888
Q ss_pred CeEEEEEecCCChHHHHHh
Q 042778 246 RKVLIVLDDVTCFRQIKSL 264 (311)
Q Consensus 246 kr~LlVLDdV~~~~~l~~l 264 (311)
..=.||+..|.+.+.++.+
T Consensus 204 ~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 204 RPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred CCCEEEEeccCCHHHHHHH
Confidence 8888999999998876654
No 345
>PRK13695 putative NTPase; Provisional
Probab=95.41 E-value=0.017 Score=48.35 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.4
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.++|.|.+|+|||||++.+++...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988754
No 346
>PLN02200 adenylate kinase family protein
Probab=95.40 E-value=0.014 Score=51.52 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=22.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+|.|.|++|+||||+|+.+.++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998765
No 347
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.39 E-value=0.018 Score=51.50 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=27.0
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccCcCc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSNFEG 198 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~ 198 (311)
...+|.++||+|.||||..+.++..+...+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 46788899999999999999999887766653
No 348
>PRK10867 signal recognition particle protein; Provisional
Probab=95.38 E-value=0.11 Score=49.95 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=24.0
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
...+|.++|.+|+||||+|..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36899999999999999998887765444
No 349
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.02 Score=50.67 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=37.9
Q ss_pred CCccchhhhHHHHHHhhcc-----------cCCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 145 NQLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
.++=|.+-..+++.+.... +-+..+-|.++|++|.|||.||++|++.....|
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 3455777777777664432 123467789999999999999999999765544
No 350
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.12 Score=48.78 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=55.7
Q ss_pred HHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC--
Q 042778 154 VEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-- 231 (311)
Q Consensus 154 ~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-- 231 (311)
+.++...|-.+--.-.+|.|=|-+|||||||...+..++...- .+.+|+. ......+. --..+++....
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG-------EES~~Qik-lRA~RL~~~~~~l 149 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG-------EESLQQIK-LRADRLGLPTNNL 149 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC-------CcCHHHHH-HHHHHhCCCccce
Confidence 3445555543222346899999999999999999999987766 6677761 22222221 11233332112
Q ss_pred ---CCCCHHHHHHHhCC-CeEEEEEecCC
Q 042778 232 ---VIPDIALSFRQLSR-RKVLIVLDDVT 256 (311)
Q Consensus 232 ---~~~~~~~l~~~L~~-kr~LlVLDdV~ 256 (311)
...+++.+.+.+.. +.-|+|+|-+-
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 12233555555554 66799999874
No 351
>PRK06761 hypothetical protein; Provisional
Probab=95.37 E-value=0.015 Score=52.77 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=26.6
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccC-cCceEEE
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSN-FEGSCFL 202 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~-F~~~~wv 202 (311)
++|.|.|++|+||||+++.+++.+... ++..++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~ 38 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYL 38 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEe
Confidence 579999999999999999999986543 3433433
No 352
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.37 E-value=0.19 Score=41.56 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=20.4
Q ss_pred EEEEEeccCcchhHHHHHHHHHhh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..|-|++-.|-||||+|..+.-+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 467788888999999999888873
No 353
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.36 E-value=0.014 Score=50.25 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHH
Q 042778 168 VYALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~ 190 (311)
..+|||+|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999997765
No 354
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.36 E-value=0.013 Score=49.62 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=20.1
Q ss_pred EEEeccCcchhHHHHHHHHHhh
Q 042778 171 LGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~~ 192 (311)
|.|.|++|+||||+|+.+..+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998874
No 355
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.36 E-value=0.014 Score=48.32 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=17.9
Q ss_pred EEEeccCcchhHHHHHHHHHh
Q 042778 171 LGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~ 191 (311)
|+|.|-.|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 356
>PLN02348 phosphoribulokinase
Probab=95.35 E-value=0.023 Score=53.70 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=26.1
Q ss_pred CCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 165 SKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 165 ~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
.+...+|||.|.+|.||||+|+.+.+.+..
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345889999999999999999999987653
No 357
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.35 E-value=0.073 Score=51.11 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=23.7
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
...+|.++|..|+||||+|..++..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999988875443
No 358
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.34 E-value=0.049 Score=52.74 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=52.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc--Cc-C-ceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS--NF-E-GSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~--~F-~-~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~ 236 (311)
-..++|.|-.|+|||||+..+.+.... .+ + .++++. +.++......+...++..-..... ..++ .
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~----iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~ 216 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAA----MGITYEEANFFMKDFEETGALERAVVFLNLADDPAV 216 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEE----ccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHH
Confidence 357899999999999999999886432 11 1 334444 333245566666666533211111 0111 0
Q ss_pred ---------HHHHHHhC---CCeEEEEEecCCCh
Q 042778 237 ---------ALSFRQLS---RRKVLIVLDDVTCF 258 (311)
Q Consensus 237 ---------~~l~~~L~---~kr~LlVLDdV~~~ 258 (311)
..+.++++ ++++||++||+...
T Consensus 217 ~R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 217 ERIVTPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 34556665 68899999999754
No 359
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.34 E-value=0.073 Score=50.23 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=28.0
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
..+++.|+|..|+||||++..++.....+=..+.+++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3689999999999999999999876533323345555
No 360
>PRK14527 adenylate kinase; Provisional
Probab=95.31 E-value=0.015 Score=49.52 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=23.1
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
...+|.|.|.+|.||||+|+.+.++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998775
No 361
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.31 E-value=0.039 Score=52.81 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=48.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H----
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I---- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~---- 236 (311)
-..++|.|..|+|||||++.+....... ...+.+. .++...+.++....+..-..... ..++ .
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~~~-~gvi~~i-----Ger~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTDAD-VVVIALV-----GERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCCC-EEEEEEE-----eeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 4579999999999999999888765432 2222222 11133344444444332211111 1111 0
Q ss_pred -----HHHHHHh--CCCeEEEEEecCCChH
Q 042778 237 -----ALSFRQL--SRRKVLIVLDDVTCFR 259 (311)
Q Consensus 237 -----~~l~~~L--~~kr~LlVLDdV~~~~ 259 (311)
..+.+++ +++++||++||+....
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr~A 243 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTRFA 243 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHH
Confidence 2344444 4799999999997543
No 362
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.31 E-value=0.016 Score=48.92 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.3
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+++|+|..|.|||||++.+.....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998754
No 363
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.30 E-value=0.012 Score=49.54 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.4
Q ss_pred EEEEeccCcchhHHHHHHHHH
Q 042778 170 ALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~ 190 (311)
+|+|.|+.|+||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 364
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.29 E-value=0.038 Score=48.30 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=33.2
Q ss_pred HHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 156 EIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 156 ~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
.|.++|..+=..-..+.|.|.+|.||||||..+.......-+.++|+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 444555433334678999999999999999987665333335667776
No 365
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.28 E-value=0.017 Score=51.85 Aligned_cols=110 Identities=16% Similarity=0.123 Sum_probs=62.0
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHH
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLS 224 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~ 224 (311)
+++.-.....+.+.++|...-...+.|.|.|..|.||||++.++...+...-...+-+.+..+..-...+
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~---------- 173 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPN---------- 173 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSS----------
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccc----------
Confidence 3444344445566666654323467899999999999999999998876661222333322221000000
Q ss_pred HHhcCC-CCCCCH-HHHHHHhCCCeEEEEEecCCChHHHHHh
Q 042778 225 KLLQDG-IVIPDI-ALSFRQLSRRKVLIVLDDVTCFRQIKSL 264 (311)
Q Consensus 225 ~l~~~~-~~~~~~-~~l~~~L~~kr~LlVLDdV~~~~~l~~l 264 (311)
.+.... ....+. +.++..|+...=.||++++.+.+.+..+
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~ 215 (270)
T PF00437_consen 174 QIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAI 215 (270)
T ss_dssp EEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHH
T ss_pred eEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHH
Confidence 000000 011223 7788888887788999999988877664
No 366
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.28 E-value=0.072 Score=47.03 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=34.1
Q ss_pred HHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 155 EEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 155 ~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
..|-++|..+=..-.++.|.|.+|.|||+||..+...-...=+.++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3455566544445679999999999999999886655323345567776
No 367
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.27 E-value=0.0092 Score=48.01 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=33.1
Q ss_pred cchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 148 VGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 148 vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
||.-..++++.+.+..-......|.|+|..|.||+++|+.++..-..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~ 47 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR 47 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence 46666677777766543344556789999999999999999886443
No 368
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.074 Score=47.50 Aligned_cols=92 Identities=18% Similarity=0.385 Sum_probs=54.0
Q ss_pred CCccchhhhHHHHHHhhcc-----------cCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCC
Q 042778 145 NQLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPG 213 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~ 213 (311)
.+.=|-...+++|.+.... +-+..+=|.++|++|.|||-+|++|+|+.. .||+. +-.
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd-----acfir----vig--- 244 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIR----VIG--- 244 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC-----ceEEe----ehh---
Confidence 3445666677766654321 113356688999999999999999999874 35665 211
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC-CeEEEEEecCC
Q 042778 214 GLGFLQQKLLSKLLQDGIVIPDIALSFRQLSR-RKVLIVLDDVT 256 (311)
Q Consensus 214 ~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~-kr~LlVLDdV~ 256 (311)
- +|.....++.. .-+..|.+.-+. |-|+|.+|.|+
T Consensus 245 -s-----elvqkyvgega--rmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 245 -S-----ELVQKYVGEGA--RMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred -H-----HHHHHHhhhhH--HHHHHHHHHhcccceEEEEeeccc
Confidence 1 12222222211 001344444444 56899999886
No 369
>PRK01184 hypothetical protein; Provisional
Probab=95.25 E-value=0.015 Score=49.02 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=18.4
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.+|+|+|++|.||||+|+ ++.+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 479999999999999987 4443
No 370
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.25 E-value=0.062 Score=47.21 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=33.0
Q ss_pred HHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHh-hccCcCceEEEe
Q 042778 156 EIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNK-ISSNFEGSCFLQ 203 (311)
Q Consensus 156 ~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~-~~~~F~~~~wv~ 203 (311)
.|.++|..+-..-.++.|+|.+|.||||||..+... ... =..++|+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~ 60 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVIT 60 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEE
Confidence 445555544344678999999999999999998654 433 34566766
No 371
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.24 E-value=0.016 Score=44.82 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=19.4
Q ss_pred EEEeccCcchhHHHHHHHHHh
Q 042778 171 LGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~ 191 (311)
|.|+|..|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999875
No 372
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.23 E-value=0.045 Score=45.95 Aligned_cols=33 Identities=18% Similarity=0.080 Sum_probs=24.8
Q ss_pred EEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 171 LGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
+.|.|.+|+|||+||..+.......=..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 678999999999999988776433324456765
No 373
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.23 E-value=0.019 Score=50.86 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=19.1
Q ss_pred EeccCcchhHHHHHHHHHhhccC
Q 042778 173 IWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 173 I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
|+||+|.||||+++.+.+-....
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999875444
No 374
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.23 E-value=0.037 Score=51.19 Aligned_cols=29 Identities=17% Similarity=0.389 Sum_probs=24.9
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
...+++++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999998875543
No 375
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.23 E-value=0.055 Score=52.65 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=53.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccC-cCceEEEecCccccCCCCChHHHHHHHHHHHhc-CC-------C----CCC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSN-FEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQ-DG-------I----VIP 234 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~-F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~-~~-------~----~~~ 234 (311)
-..++|.|-.|+|||||+..+...+... =+.++++- +.++.....++...++..-.. .. . ..+
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~l----IGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd 236 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG----VGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMN 236 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEE----eccCchHHHHHHHHHHhcCccccCcccccceEEEEECCC
Confidence 4579999999999999999887764322 25566665 433244556666666552110 10 0 001
Q ss_pred -C-H---------HHHHHHhCC---CeEEEEEecCCChH
Q 042778 235 -D-I---------ALSFRQLSR---RKVLIVLDDVTCFR 259 (311)
Q Consensus 235 -~-~---------~~l~~~L~~---kr~LlVLDdV~~~~ 259 (311)
. . ..+.+++++ +++||++||+....
T Consensus 237 ~p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~A 275 (494)
T CHL00060 237 EPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFV 275 (494)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHHH
Confidence 1 0 446666643 49999999997543
No 376
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.22 E-value=0.062 Score=55.02 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=38.8
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..++|....++.+.+.+..-...-.-|.|+|..|+|||++|+++++.-
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 468999988888887776433344578899999999999999999864
No 377
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.084 Score=47.93 Aligned_cols=51 Identities=18% Similarity=0.301 Sum_probs=38.5
Q ss_pred CCccchhhhHHHHHHhhcc---------c-CCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 145 NQLVGVESRVEEIESLLGA---------E-SKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
++.-|.+...+.|.+.... + ....+-|.++|++|.||+.||++|+..-...
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST 193 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST 193 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc
Confidence 5678999888888764321 1 1227889999999999999999999875433
No 378
>PRK14532 adenylate kinase; Provisional
Probab=95.20 E-value=0.016 Score=49.11 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.9
Q ss_pred EEEeccCcchhHHHHHHHHHhh
Q 042778 171 LGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~~ 192 (311)
|.|.|++|.||||+|+.+.++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998765
No 379
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.19 E-value=0.054 Score=45.94 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=23.2
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..|.|.|..|+||||+|+.+.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999988654
No 380
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.19 E-value=0.02 Score=49.47 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=24.9
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.++++|+++|..|.|||||...+.+...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4699999999999999999999887743
No 381
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=95.19 E-value=0.13 Score=46.63 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=30.3
Q ss_pred cchhhhHHHHHHhhcccC---------CCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 148 VGVESRVEEIESLLGAES---------KDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 148 vGr~~~~~~l~~~L~~~~---------~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.|.+..++.+.+++.... .....++|+|++|+|||||...+.++
T Consensus 89 ~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~ 141 (276)
T TIGR03596 89 KGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGK 141 (276)
T ss_pred ccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 455655555655553221 12456899999999999999998764
No 382
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.18 E-value=0.028 Score=51.76 Aligned_cols=28 Identities=14% Similarity=0.401 Sum_probs=24.3
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
+.-..|+|+||.|.||||+++.+..++.
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg 158 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLG 158 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3466899999999999999999998763
No 383
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.17 E-value=0.033 Score=46.64 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=28.1
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEE
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFL 202 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv 202 (311)
...+|=+.|++|.||||||.+++.++...--.+.-+
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 356888889999999999999999976654444433
No 384
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.17 E-value=0.037 Score=53.14 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=22.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-..++|.|..|.|||||++.+.+...
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~~ 180 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAPD 180 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCCC
Confidence 45889999999999999998887643
No 385
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.16 E-value=0.14 Score=49.02 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.0
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.-.+++++|..|+||||+...+..+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999988765
No 386
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.16 E-value=0.03 Score=43.85 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.0
Q ss_pred EEEeccCcchhHHHHHHHHHhhccC
Q 042778 171 LGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
|.+.|.||+||||++..+.+.+...
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999999886553
No 387
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.15 E-value=0.097 Score=41.85 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=19.1
Q ss_pred EEEeccCcchhHHHHHHHHHh
Q 042778 171 LGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~ 191 (311)
|+|+|..|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999988775
No 388
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.14 E-value=0.016 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=21.1
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
++|+|.|-||+||||++..++.-+.
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la 25 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALA 25 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHH
Confidence 4789999999999999988877543
No 389
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.14 E-value=0.014 Score=50.32 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=21.0
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
..|+|+|++|+|||||+..+.+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 57899999999999999998876
No 390
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.12 E-value=0.041 Score=47.47 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=28.8
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc-------cCcCceEEEecCccccCCCCChHHHHHHHHH
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS-------SNFEGSCFLQNVREESQRPGGLGFLQQKLLS 224 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~-------~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~ 224 (311)
+..|+|++|.||||++..+...+. ..-...+-++ ... +..+..+...+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~----~~s-N~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVV----SPS-NAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEE----ESS-HHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceee----cCC-chhHHHHHHHHHh
Confidence 788999999999987777666651 2333334443 222 3445555555554
No 391
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.12 E-value=0.03 Score=51.37 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=27.2
Q ss_pred HHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 157 IESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 157 l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
+.+-+........+|+|.|.+|+|||||+..+....
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 333343333458899999999999999999987753
No 392
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=95.10 E-value=0.053 Score=52.62 Aligned_cols=85 Identities=16% Similarity=0.121 Sum_probs=48.9
Q ss_pred eEEEEEeccCcchhHHHHH-HHHHhhccCcCce-EEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H--
Q 042778 168 VYALGIWGIGGIDRTTIAR-AIFNKISSNFEGS-CFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I-- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~-~v~~~~~~~F~~~-~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~-- 236 (311)
-..++|.|-.|+||||||. .+.++. .-+.. +++. +.++......+.+.+...-..... ..++ .
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q~--~~dv~cV~~~----IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r 214 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQK--GQNVICVYVA----IGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQ 214 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhcc--cCCeEEEEEE----ecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHH
Confidence 3578999999999999965 566653 33444 4444 333245566666665543211111 1111 0
Q ss_pred -------HHHHHHh--CCCeEEEEEecCCCh
Q 042778 237 -------ALSFRQL--SRRKVLIVLDDVTCF 258 (311)
Q Consensus 237 -------~~l~~~L--~~kr~LlVLDdV~~~ 258 (311)
..+.+++ +++++|||+||+...
T Consensus 215 ~~ap~~a~aiAEyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 215 YLAPYTGAALAEYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHHHHhhHHHHHHHcCCCEEEEEcChhHH
Confidence 2233333 479999999999754
No 393
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.08 E-value=0.018 Score=47.75 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=27.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEE
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFL 202 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv 202 (311)
.++++|+|..|.|||||...+..+++.+--.++-|
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~i 36 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATV 36 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEE
Confidence 46899999999999999999988765543333333
No 394
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.08 E-value=0.019 Score=52.29 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.5
Q ss_pred EEEEEeccCcchhHHHHHHHHHhh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.+|.+.|.+|+||||+|+.+.++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578889999999999999998875
No 395
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.07 E-value=0.02 Score=44.13 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.0
Q ss_pred eEEEEEeccCcchhHHHHHHHH
Q 042778 168 VYALGIWGIGGIDRTTIARAIF 189 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~ 189 (311)
-..++|.|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 396
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=95.06 E-value=0.061 Score=42.66 Aligned_cols=59 Identities=24% Similarity=0.380 Sum_probs=50.8
Q ss_pred EEecCccccCCCChHHHHHHHHHhCCCcEEe-eCCCCCCCcchHHHHHHHHhccceeeeeccC
Q 042778 21 VFQSFRGEDNRDNFTGHLYSALSQKGIETFI-DDQLNRGDEISQSLVDAIEASAISLIIFSEA 82 (311)
Q Consensus 21 vFis~~g~D~~~~f~~~L~~~L~~~gi~~f~-d~~~~~G~~~~~~i~~ai~~s~~~i~v~S~~ 82 (311)
|||.|. .|. .....+..-|+..|+.+.+ .+....|..+...+.+.+.++..+|++++|+
T Consensus 2 VFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 2 VFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred EEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 899988 553 5888999999988988875 3466889999999999999999999999985
No 397
>PRK14531 adenylate kinase; Provisional
Probab=95.06 E-value=0.022 Score=48.19 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=21.4
Q ss_pred EEEEEeccCcchhHHHHHHHHHhh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
+.|.|+|++|.||||+|+.+.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998875
No 398
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.06 E-value=0.017 Score=55.05 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=23.5
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-++.|+|+|..|.|||||++++++..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999998764
No 399
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.04 E-value=0.038 Score=52.87 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=36.1
Q ss_pred CCCccchhhhHHHHHHhhc-------c---cC--CC----eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLG-------A---ES--KD----VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~-------~---~~--~~----~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
....+|.+..++.+...+. . .. ++ ...+.++|+.|+|||+||+.++..+.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 4567899988887754441 1 11 11 25789999999999999999987654
No 400
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.04 E-value=0.059 Score=51.82 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=21.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-..++|.|..|+|||||++.+....
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhccc
Confidence 5689999999999999999887754
No 401
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.029 Score=57.23 Aligned_cols=48 Identities=17% Similarity=0.346 Sum_probs=37.9
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-+.++||+.+++.+++.|.....+- -.++|-+|+|||+++.-++.++.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNN--PvLiGEpGVGKTAIvEGLA~rIv 216 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNN--PVLVGEPGVGKTAIVEGLAQRIV 216 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCC--CeEecCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999887543221 13568999999999999999843
No 402
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.03 E-value=0.026 Score=47.69 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=22.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-.++.|.|+.|+|||||+++++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578899999999999999999987
No 403
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.02 E-value=0.019 Score=46.67 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.+-|.|.|.+|+||||||..++..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH
Confidence 456889999999999999999865
No 404
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.02 E-value=0.017 Score=46.05 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.8
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+++|+|..|.|||||.+.+.....
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 4899999999999999999877543
No 405
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.01 E-value=0.27 Score=44.04 Aligned_cols=53 Identities=11% Similarity=-0.024 Sum_probs=36.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccC-cCceEEEecCccccCCCCChHHHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSN-FEGSCFLQNVREESQRPGGLGFLQQKLLSKLL 227 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~-F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~ 227 (311)
-.++.|.|.+|+||||++..+......+ =..++|+. . ......+...++..+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS----~---E~~~~~~~~r~~~~~~ 83 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS----L---EEPVVRTARRLLGQYA 83 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE----c---ccCHHHHHHHHHHHHh
Confidence 4588899999999999999988775433 24466766 2 2344556666655443
No 406
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.00 E-value=0.14 Score=42.91 Aligned_cols=77 Identities=8% Similarity=0.031 Sum_probs=43.8
Q ss_pred EEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCC------CCH-HHHHHH
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVI------PDI-ALSFRQ 242 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~------~~~-~~l~~~ 242 (311)
++.|.|.+|.||||+|..+..+... ...++. .. ...-.+.++.+-.+........ .++ +.+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~ia----t~--~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~ 73 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIA----TA--QPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD 73 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCc----CC--CCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh
Confidence 6889999999999999999876432 123333 11 2223445555544443322221 223 444443
Q ss_pred hCCCeEEEEEecCC
Q 042778 243 LSRRKVLIVLDDVT 256 (311)
Q Consensus 243 L~~kr~LlVLDdV~ 256 (311)
..+.. ++++|.+.
T Consensus 74 ~~~~~-~VlID~Lt 86 (170)
T PRK05800 74 AAPGR-CVLVDCLT 86 (170)
T ss_pred cCCCC-EEEehhHH
Confidence 43333 78888874
No 407
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.99 E-value=0.033 Score=51.26 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.0
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
+++-+.|-||+||||+|.+++-.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~ 24 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALA 24 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHH
Confidence 57889999999999999877664
No 408
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.98 E-value=0.024 Score=48.26 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.++|.|+|++|+|||||++.+..+.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 5789999999999999999998875
No 409
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.97 E-value=0.038 Score=45.78 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=23.8
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
++++|+|..|+|||||+..+.......
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999886544
No 410
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=94.97 E-value=0.048 Score=50.82 Aligned_cols=98 Identities=18% Similarity=0.338 Sum_probs=60.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC-------
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD------- 235 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~------- 235 (311)
-..||+.|-.|+|||-|.+++-+.+..+..+...+..+++- ...-.++..++...-..... ++.+
T Consensus 147 GgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGER---tREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~R 223 (468)
T COG0055 147 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER---TREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMR 223 (468)
T ss_pred CceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEecccc---ccchHHHHHHHHhcCCCCceeEEEeecCCCCcceee
Confidence 45799999999999999999999988777776555555553 33445566665544211111 1111
Q ss_pred --H--HHHHHHh---CCCeEEEEEecCCChHH----HHHhhccC
Q 042778 236 --I--ALSFRQL---SRRKVLIVLDDVTCFRQ----IKSLIGML 268 (311)
Q Consensus 236 --~--~~l~~~L---~~kr~LlVLDdV~~~~~----l~~l~~~~ 268 (311)
+ -.+.+++ .++.+|+.+||+...-| .-.|+|.-
T Consensus 224 ValtGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~ 267 (468)
T COG0055 224 VALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRM 267 (468)
T ss_pred ehhhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhccC
Confidence 0 1223333 36899999999976544 44555443
No 411
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.95 E-value=0.023 Score=48.08 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=25.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFE 197 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~ 197 (311)
.+.+.|+|+.|+||+||+..+.+.....|.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~ 31 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFE 31 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceE
Confidence 368999999999999999999888654443
No 412
>PLN02796 D-glycerate 3-kinase
Probab=94.94 E-value=0.022 Score=53.02 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=24.5
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..-+|||.|..|.|||||++.+...+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4678999999999999999999887644
No 413
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.94 E-value=0.039 Score=51.19 Aligned_cols=50 Identities=26% Similarity=0.218 Sum_probs=37.8
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCc
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEG 198 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~ 198 (311)
..++|.+..+..+...+..+ +.+-+.|.+|+|||+||+.+...+...|-.
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 34888877777666555432 357889999999999999999988755543
No 414
>PHA02244 ATPase-like protein
Probab=94.94 E-value=0.027 Score=52.86 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=22.0
Q ss_pred EEEEeccCcchhHHHHHHHHHhhccC
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
-|.|+|..|+|||+||+++++.....
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 46779999999999999999986443
No 415
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.94 E-value=0.032 Score=49.66 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=41.5
Q ss_pred CCCCCCCccchhhhHHH---HHHhhcc----cCCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 140 PCSNKNQLVGVESRVEE---IESLLGA----ESKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 140 ~~l~~~~~vGr~~~~~~---l~~~L~~----~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
+.+..++.||.+....+ |.+.|.. +....+-|..+|++|.|||.+|+++++..+..|
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~ 179 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL 179 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce
Confidence 33336788999876543 3445543 234488999999999999999999999865543
No 416
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.93 E-value=0.073 Score=51.34 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-..++|.|-.|+|||||+..+.++..
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~ 166 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAG 166 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhc
Confidence 45789999999999999999888753
No 417
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.92 E-value=0.047 Score=43.24 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=34.4
Q ss_pred CCCccchhhhHHHHHHhh----cc-cCCCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 144 KNQLVGVESRVEEIESLL----GA-ESKDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L----~~-~~~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
..+++|..-..+.|.+.| .. .+++.-|++.+|..|+|||.+++.+++.
T Consensus 24 ~~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 24 QRNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 346777765555555444 33 3455889999999999999988877775
No 418
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.91 E-value=0.1 Score=50.37 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.0
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.-..++|.|..|.|||||++.+.....
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~~ 183 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNTS 183 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 356899999999999999998887644
No 419
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.90 E-value=0.026 Score=52.42 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=38.6
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
..++|....++++.+.+..-...-.-|.|+|-.|+||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999999998887654444456889999999999999999865
No 420
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=94.90 E-value=0.06 Score=51.74 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-..++|.|..|+|||||++.+.....
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~~~ 182 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKGCL 182 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccC
Confidence 45889999999999999999987543
No 421
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.89 E-value=0.02 Score=46.49 Aligned_cols=22 Identities=14% Similarity=0.412 Sum_probs=19.4
Q ss_pred EEEEeccCcchhHHHHHHHHHh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.|+++|.+|+|||||...+.+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988764
No 422
>PRK00698 tmk thymidylate kinase; Validated
Probab=94.89 E-value=0.072 Score=45.44 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.7
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
++|.|.|+.|+||||+++.+.+.+.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998754
No 423
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.89 E-value=0.067 Score=52.17 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=30.4
Q ss_pred hHHHHHHhhc-----ccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 153 RVEEIESLLG-----AESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 153 ~~~~l~~~L~-----~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.+.++..||. ...-+.+++.|+|+.|+||||..+.+....
T Consensus 90 KI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 90 KISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred hHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 4556666766 222346799999999999999999888863
No 424
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.88 E-value=0.079 Score=50.75 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=23.2
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
.-..++|.|..|.|||||.+.+.+....
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~~ 163 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAKA 163 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3568999999999999999988876543
No 425
>PRK12338 hypothetical protein; Provisional
Probab=94.86 E-value=0.025 Score=52.10 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+|.|.|.+|+||||+|+.+..+.
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 5789999999999999999999874
No 426
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.85 E-value=0.023 Score=51.45 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.8
Q ss_pred EEEEEeccCcchhHHHHHHHHHhh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
++|+|+|=||+||||+|..++.-+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~L 25 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAAL 25 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 478899999999999999887754
No 427
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.85 E-value=0.05 Score=51.14 Aligned_cols=90 Identities=13% Similarity=0.055 Sum_probs=52.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcC---ceEEEecCccccCCCCChHHHHH--HHHHHHhcCCCCCCCH-HHHHH
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFE---GSCFLQNVREESQRPGGLGFLQQ--KLLSKLLQDGIVIPDI-ALSFR 241 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~---~~~wv~~~~~~s~~~~~~~~l~~--~ll~~l~~~~~~~~~~-~~l~~ 241 (311)
-..|.|+|..|.||||+++++.+.+....+ .++.+.+.-+.. +..+.. ..+.+... ..+..+. ..++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~-----~~~~~~~~~~v~Q~~v-~~~~~~~~~~l~~ 207 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFV-----YDEIETISASVCQSEI-PRHLNNFAAGVRN 207 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEe-----ccccccccceeeeeec-cccccCHHHHHHH
Confidence 479999999999999999999887754433 223333222111 111100 00001000 0012233 67777
Q ss_pred HhCCCeEEEEEecCCChHHHHH
Q 042778 242 QLSRRKVLIVLDDVTCFRQIKS 263 (311)
Q Consensus 242 ~L~~kr~LlVLDdV~~~~~l~~ 263 (311)
.|+...-.+++..+.+.+..+.
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~ 229 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISA 229 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHH
Confidence 8888888888999988876653
No 428
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=94.85 E-value=0.026 Score=49.27 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=22.5
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+|+|.|+.|.||||+|+.++.++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998754
No 429
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=94.84 E-value=0.028 Score=53.07 Aligned_cols=29 Identities=24% Similarity=0.553 Sum_probs=25.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
..+|+|+|..|.|||||+..+...++..+
T Consensus 5 ~~~i~i~G~~gsGKTTl~~~l~~~l~~~~ 33 (369)
T PRK14490 5 PFEIAFCGYSGSGKTTLITALVRRLSERF 33 (369)
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHhhCc
Confidence 56899999999999999999999876553
No 430
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.84 E-value=0.043 Score=50.48 Aligned_cols=92 Identities=16% Similarity=0.092 Sum_probs=53.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCH-HHHHHHhCCC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDI-ALSFRQLSRR 246 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~-~~l~~~L~~k 246 (311)
-..+.|.|..|.|||||++++...+.... ..+.+.+..+..-...+...+ ...-.......-+. +.++..|+..
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~Lr~~ 218 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHL----FYSKGGQGLAKVTPKDLLQSCLRMR 218 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEE----EecCCCCCcCccCHHHHHHHHhcCC
Confidence 46899999999999999999988764432 334444433322100010000 00000000011122 6777778888
Q ss_pred eEEEEEecCCChHHHHHh
Q 042778 247 KVLIVLDDVTCFRQIKSL 264 (311)
Q Consensus 247 r~LlVLDdV~~~~~l~~l 264 (311)
.=.||+|.+...+.++.+
T Consensus 219 pd~ii~gE~r~~e~~~~l 236 (308)
T TIGR02788 219 PDRIILGELRGDEAFDFI 236 (308)
T ss_pred CCeEEEeccCCHHHHHHH
Confidence 888999999987766544
No 431
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.82 E-value=0.12 Score=47.56 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=38.1
Q ss_pred HHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccC------cCceEEEecCccccCCCCChHHHH
Q 042778 156 EIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSN------FEGSCFLQNVREESQRPGGLGFLQ 219 (311)
Q Consensus 156 ~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~------F~~~~wv~~~~~~s~~~~~~~~l~ 219 (311)
.+..+|..+-..-.++-|+|.+|+||||||..++...... =..++||+ .-. .+...++.
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~----te~-~f~~~rl~ 147 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID----TEN-TFRPERIM 147 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE----CCC-CCCHHHHH
Confidence 3445555333346788999999999999999887664321 12678887 322 44555543
No 432
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=94.81 E-value=0.032 Score=53.77 Aligned_cols=26 Identities=8% Similarity=0.239 Sum_probs=22.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-..++|.|..|+|||||.+.+.....
T Consensus 175 Gqri~I~G~sG~GKTTLL~~Ia~~~~ 200 (455)
T PRK07960 175 GQRMGLFAGSGVGKSVLLGMMARYTQ 200 (455)
T ss_pred CcEEEEECCCCCCccHHHHHHhCCCC
Confidence 45799999999999999998887653
No 433
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.80 E-value=0.028 Score=47.45 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.9
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...++.|.|.+|.||||+|+.+.....
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998754
No 434
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.78 E-value=0.029 Score=46.54 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=21.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.+++.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999998776665
No 435
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.78 E-value=0.035 Score=45.38 Aligned_cols=25 Identities=24% Similarity=0.566 Sum_probs=21.3
Q ss_pred EEEEeccCcchhHHHHHHHHHhhcc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
++++.|.+|+||||++..+......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~ 25 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRA 25 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3789999999999999999887533
No 436
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.78 E-value=0.044 Score=54.04 Aligned_cols=55 Identities=25% Similarity=0.329 Sum_probs=40.1
Q ss_pred CccchhhhHHHHHHhhccc---CCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEE
Q 042778 146 QLVGVESRVEEIESLLGAE---SKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFL 202 (311)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv 202 (311)
+++--...++++..||... ....+++.+.|++|+||||.++.+++... |+..=|.
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 3444456788888888642 23367999999999999999999999752 3444454
No 437
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.77 E-value=0.035 Score=55.00 Aligned_cols=45 Identities=20% Similarity=0.457 Sum_probs=36.2
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
++++|.+..++.+...+... ....+-|+|..|+||||+|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999998888766432 2345678999999999999999875
No 438
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.76 E-value=0.14 Score=42.80 Aligned_cols=77 Identities=6% Similarity=-0.012 Sum_probs=44.0
Q ss_pred EEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCC---CCHHHHHHHhCC--
Q 042778 171 LGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVI---PDIALSFRQLSR-- 245 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~---~~~~~l~~~L~~-- 245 (311)
+.|.|..|.|||++|..+... .-...+++. ..+ ..+. .+++.+........... +....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a----t~~-~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIA----TAE-AFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEE----ccC-cCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC
Confidence 678999999999999988765 223455665 333 3433 35555544333222222 112445555522
Q ss_pred CeEEEEEecCC
Q 042778 246 RKVLIVLDDVT 256 (311)
Q Consensus 246 kr~LlVLDdV~ 256 (311)
+.-.|++|.+.
T Consensus 73 ~~~~VLIDclt 83 (169)
T cd00544 73 PGDVVLIDCLT 83 (169)
T ss_pred CCCEEEEEcHh
Confidence 23379999874
No 439
>PRK14529 adenylate kinase; Provisional
Probab=94.76 E-value=0.14 Score=44.83 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.7
Q ss_pred EEEeccCcchhHHHHHHHHHhhc
Q 042778 171 LGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
|.|.|++|+||||+|+.+..++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 77899999999999999988754
No 440
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.76 E-value=0.024 Score=49.17 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=22.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-.+++|.|..|.|||||++.++.-.
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 4589999999999999999998753
No 441
>PRK06820 type III secretion system ATPase; Validated
Probab=94.74 E-value=0.11 Score=49.94 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=21.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-..++|.|..|+|||||++.+....
T Consensus 163 Gqri~I~G~sG~GKStLl~~I~~~~ 187 (440)
T PRK06820 163 GQRIGIFAAAGVGKSTLLGMLCADS 187 (440)
T ss_pred CCEEEEECCCCCChHHHHHHHhccC
Confidence 3478999999999999999887754
No 442
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.74 E-value=0.13 Score=47.23 Aligned_cols=44 Identities=9% Similarity=0.371 Sum_probs=35.4
Q ss_pred hhHHHHHHhhcccC-CCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 152 SRVEEIESLLGAES-KDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 152 ~~~~~l~~~L~~~~-~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
.-.+.|.+.|...+ +...+|||.|.=|+||||+.+.+.+++...
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34566777776543 568999999999999999999999987666
No 443
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=94.74 E-value=0.024 Score=50.24 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.6
Q ss_pred EEEEEecc-CcchhHHHHHHHHHhh
Q 042778 169 YALGIWGI-GGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~Gm-gGiGKTtLA~~v~~~~ 192 (311)
++|+|+|+ ||+|||||+.++..-+
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL 26 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWAL 26 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHH
Confidence 47889988 8999999999988753
No 444
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.73 E-value=0.034 Score=49.90 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.3
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
+|+|.|-.|.||||+|+++.+.+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~ 24 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA 24 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999887654
No 445
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.73 E-value=0.024 Score=50.74 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=21.1
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
++|+|.|-||+||||+|..++.-+.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La 26 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALA 26 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHH
Confidence 4678889999999999998887644
No 446
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.71 E-value=0.16 Score=49.54 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=22.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+++++|..|+||||++..++...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4799999999999999999998865
No 447
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.71 E-value=0.062 Score=51.79 Aligned_cols=87 Identities=15% Similarity=0.179 Sum_probs=48.4
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H---
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I--- 236 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~--- 236 (311)
.-..++|.|..|.|||||++.+....... .+++... .++......+.+.++..-..... ..+. .
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d-~~vi~~i-----Ger~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~ 235 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD-VNVIALI-----GERGREVREFIELILGEDGMARSVVVCATSDRSSIERA 235 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC-eEEEEEE-----ccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHH
Confidence 35689999999999999999988754332 1233322 11133444444444332111000 0111 0
Q ss_pred ------HHHHHHh--CCCeEEEEEecCCChH
Q 042778 237 ------ALSFRQL--SRRKVLIVLDDVTCFR 259 (311)
Q Consensus 237 ------~~l~~~L--~~kr~LlVLDdV~~~~ 259 (311)
..+.+++ +++++||++||+....
T Consensus 236 ~a~~~a~tiAEyfrd~G~~VLl~~DslTr~A 266 (441)
T PRK09099 236 KAAYVATAIAEYFRDRGLRVLLMMDSLTRFA 266 (441)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhHHH
Confidence 2333444 4789999999997643
No 448
>PRK02496 adk adenylate kinase; Provisional
Probab=94.70 E-value=0.03 Score=47.18 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.7
Q ss_pred EEEEeccCcchhHHHHHHHHHhh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.+.|.|++|.||||+|+.+....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998875
No 449
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=94.69 E-value=0.048 Score=44.41 Aligned_cols=35 Identities=17% Similarity=0.440 Sum_probs=28.3
Q ss_pred EEEEEec-cCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 169 YALGIWG-IGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 169 ~vi~I~G-mgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
++|+||| .||+||||+|..++..+...-..++.++
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid 36 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLID 36 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 5899999 7899999999999998766654466665
No 450
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.69 E-value=0.098 Score=48.33 Aligned_cols=94 Identities=15% Similarity=0.085 Sum_probs=51.8
Q ss_pred HHHHHhhcc-cCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC--
Q 042778 155 EEIESLLGA-ESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-- 231 (311)
Q Consensus 155 ~~l~~~L~~-~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-- 231 (311)
..|...|.. +-..-+++-|+|..|+||||||..+.......-..++|++ ... ..+. ..+..++-..+
T Consensus 39 ~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID----~e~-~ld~-----~~a~~lGvdl~rl 108 (322)
T PF00154_consen 39 PALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID----AEH-ALDP-----EYAESLGVDLDRL 108 (322)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE----SSS----H-----HHHHHTT--GGGE
T ss_pred cccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec----Ccc-cchh-----hHHHhcCccccce
Confidence 344445542 2123569999999999999999988887655555678988 333 3332 33333332211
Q ss_pred ---CCCCH----HHHHHHhCC-CeEEEEEecCCCh
Q 042778 232 ---VIPDI----ALSFRQLSR-RKVLIVLDDVTCF 258 (311)
Q Consensus 232 ---~~~~~----~~l~~~L~~-kr~LlVLDdV~~~ 258 (311)
..+.. ..+...++. .--++|+|-|-..
T Consensus 109 lv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 109 LVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred EEecCCcHHHHHHHHHHHhhcccccEEEEecCccc
Confidence 11221 444444544 3459999998753
No 451
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=94.69 E-value=0.13 Score=50.70 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=23.4
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
....+|.++|.+|.||||+|+.++..
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~ 392 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQP 392 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998875
No 452
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=94.68 E-value=0.024 Score=51.09 Aligned_cols=24 Identities=25% Similarity=0.581 Sum_probs=20.5
Q ss_pred EEEEEeccCcchhHHHHHHHHHhh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
++|+|+|=||+||||+|..+..-+
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~L 25 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAAL 25 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 478888999999999998887754
No 453
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=94.68 E-value=0.07 Score=52.28 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=50.1
Q ss_pred eEEEEEeccCcchhHHHH-HHHHHhhccCcCce-EEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H--
Q 042778 168 VYALGIWGIGGIDRTTIA-RAIFNKISSNFEGS-CFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I-- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA-~~v~~~~~~~F~~~-~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~-- 236 (311)
-..++|.|-.|+|||||| ..+.++. ..+.. +++. +.++.....++.+.+...-..... ..++ .
T Consensus 161 GQr~~I~g~~g~GKt~Lal~~i~~~~--~~dv~~V~~~----IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r 234 (501)
T TIGR00962 161 GQRELIIGDRQTGKTAVAIDTIINQK--DSDVYCVYVA----IGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQ 234 (501)
T ss_pred CCEEEeecCCCCCccHHHHHHHHhhc--CCCeEEEEEE----ccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHH
Confidence 457899999999999996 5676664 33554 5554 333244556666665543211111 1111 0
Q ss_pred -------HHHHHHh--CCCeEEEEEecCCCh
Q 042778 237 -------ALSFRQL--SRRKVLIVLDDVTCF 258 (311)
Q Consensus 237 -------~~l~~~L--~~kr~LlVLDdV~~~ 258 (311)
..+.+++ +++++|||+||+...
T Consensus 235 ~~a~~~a~aiAEyfrd~G~~VLlv~Ddltr~ 265 (501)
T TIGR00962 235 YLAPYTGCTMAEYFRDNGKHALIIYDDLSKH 265 (501)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecchHHH
Confidence 2233333 369999999999754
No 454
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=94.67 E-value=0.027 Score=50.25 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=22.3
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
+.|+|+|-|||||+|.+..+.--+...
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~ 27 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEM 27 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhc
Confidence 568999999999999999887654443
No 455
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.66 E-value=0.026 Score=48.64 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=22.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-.+++|.|..|.|||||++.++...
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998753
No 456
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.64 E-value=0.029 Score=48.66 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=20.6
Q ss_pred EEEEeccCcchhHHHHHHHHHhh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.|.|.|++|+||||+|+.+..+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998775
No 457
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.64 E-value=0.027 Score=48.73 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEeccCcchhHHHHHHHHHhh
Q 042778 171 LGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~~ 192 (311)
|.|.|++|+||||+|+.+..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998764
No 458
>PLN02165 adenylate isopentenyltransferase
Probab=94.63 E-value=0.03 Score=51.85 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=23.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-.+++|+|+.|+||||||..++..+.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 55899999999999999999988754
No 459
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=94.63 E-value=0.069 Score=51.83 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=52.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccC---cC-ceEEEecCccccCCCCChHHHHHHHHHHHhcCCC----CCC-C--H
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSN---FE-GSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI----VIP-D--I 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~---F~-~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~-~--~ 236 (311)
-..++|.|-.|+|||||+..+.+....+ =+ .++++. +.++...+.++.+.++..-..... ... . .
T Consensus 143 GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~----iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~ 218 (460)
T PRK04196 143 GQKLPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAA----MGITFEEANFFMEDFEETGALERSVVFLNLADDPAI 218 (460)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHhhhhccCCCceEEEEEE----eccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHH
Confidence 3568999999999999999988874321 11 334444 333345566666666553211111 011 0 0
Q ss_pred ---------HHHHHHhC---CCeEEEEEecCCCh
Q 042778 237 ---------ALSFRQLS---RRKVLIVLDDVTCF 258 (311)
Q Consensus 237 ---------~~l~~~L~---~kr~LlVLDdV~~~ 258 (311)
..+.++++ ++++||++||+...
T Consensus 219 ~R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 219 ERILTPRMALTAAEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEEcChHHH
Confidence 45566665 49999999999653
No 460
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.61 E-value=0.065 Score=50.12 Aligned_cols=56 Identities=25% Similarity=0.246 Sum_probs=38.4
Q ss_pred CCCccchhhhHHH---HHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCce
Q 042778 144 KNQLVGVESRVEE---IESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGS 199 (311)
Q Consensus 144 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~ 199 (311)
...+||.....+. +.+++..+.-.-+.|.|.|++|.|||+||.++.+.+....+.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~ 81 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFV 81 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EE
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCee
Confidence 5689998765553 4455554433367889999999999999999999988766543
No 461
>PRK10536 hypothetical protein; Provisional
Probab=94.61 E-value=0.076 Score=47.42 Aligned_cols=53 Identities=9% Similarity=0.062 Sum_probs=38.0
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHh-h-ccCcCceEE
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNK-I-SSNFEGSCF 201 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~-~-~~~F~~~~w 201 (311)
..+.++......+...|.. ..++.+.|..|.|||+||.++..+ + ...|+..+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 3456677777777776653 248999999999999999998885 3 445554443
No 462
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.59 E-value=0.057 Score=50.26 Aligned_cols=92 Identities=18% Similarity=0.077 Sum_probs=53.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCC-CCChHHHHHHHHHHHhcCCCCCCCH-HHHHHHhCC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQR-PGGLGFLQQKLLSKLLQDGIVIPDI-ALSFRQLSR 245 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~-~~~~~~l~~~ll~~l~~~~~~~~~~-~~l~~~L~~ 245 (311)
.+.|.|+|..|.||||+.+++.+.+... +..+-+.+..+..-. .++... ++..-.+.....-+. ..++..|+.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~-~ri~tiEd~~El~l~~~~n~~~----~~~~~~~~~~~~~~~~~ll~~~LR~ 234 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAI-ERLITVEDAREIVLSNHPNRVH----LLASKGGQGRAKVTTQDLIEACLRL 234 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCC-CeEEEecCCCccccccCCCEEE----EEecCCCCCcCcCcHHHHHHHHhcc
Confidence 4579999999999999999998876553 223333332222110 011100 000000000011123 778888888
Q ss_pred CeEEEEEecCCChHHHHHh
Q 042778 246 RKVLIVLDDVTCFRQIKSL 264 (311)
Q Consensus 246 kr~LlVLDdV~~~~~l~~l 264 (311)
..=.||++.|.+.+.+..+
T Consensus 235 ~PD~IivGEiR~~ea~~~l 253 (332)
T PRK13900 235 RPDRIIVGELRGAEAFSFL 253 (332)
T ss_pred CCCeEEEEecCCHHHHHHH
Confidence 8889999999998877655
No 463
>PRK07429 phosphoribulokinase; Provisional
Probab=94.58 E-value=0.051 Score=50.43 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=25.5
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
..+.+|||.|..|.||||+++.+...+...
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~ 35 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEE 35 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccC
Confidence 457899999999999999999998775533
No 464
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.58 E-value=0.028 Score=43.46 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEeccCcchhHHHHHHHHHh
Q 042778 171 LGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~ 191 (311)
|+|.|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 465
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.58 E-value=0.1 Score=51.04 Aligned_cols=86 Identities=20% Similarity=0.132 Sum_probs=47.1
Q ss_pred eEEEEEeccCcchhHHHH-HHHHHhhc-------cCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC------CC
Q 042778 168 VYALGIWGIGGIDRTTIA-RAIFNKIS-------SNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI------VI 233 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA-~~v~~~~~-------~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~------~~ 233 (311)
-..++|.|-.|+|||||| -.+.++.. .+-+.++++. +.++......+.+. |.+-+.-+. ..
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~Vyva----IGeR~rEV~ei~~~-L~e~GaL~~TvVV~AtA 263 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVS----IGQRCSNVARIHRL-LRSYGALRYTTVMAATA 263 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEE----eccchHHHHHHHHH-HHhcCCccceEEEEECC
Confidence 356899999999999997 55666531 2334456665 44423333332222 222221001 11
Q ss_pred CC---H--------HHHHHHh--CCCeEEEEEecCCCh
Q 042778 234 PD---I--------ALSFRQL--SRRKVLIVLDDVTCF 258 (311)
Q Consensus 234 ~~---~--------~~l~~~L--~~kr~LlVLDdV~~~ 258 (311)
++ . ..+-+++ +++.+|||+||+...
T Consensus 264 dep~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 264 AEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 11 0 2333333 479999999999753
No 466
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.57 E-value=0.028 Score=48.71 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=22.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-.+++|.|..|.|||||++.+..-.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998753
No 467
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=94.57 E-value=0.082 Score=42.57 Aligned_cols=22 Identities=18% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEeccCcchhHHHHHHHHHh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.+.++|++|+|||||...+..+
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999888754
No 468
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=94.56 E-value=0.031 Score=47.89 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=20.7
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
++|+|+|+.|.||||+|+.+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~ 24 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQ 24 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999988775
No 469
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=94.56 E-value=0.089 Score=51.56 Aligned_cols=91 Identities=19% Similarity=0.127 Sum_probs=50.3
Q ss_pred eEEEEEeccCcchhHHHH-HHHHHhhccCcCce-EEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H--
Q 042778 168 VYALGIWGIGGIDRTTIA-RAIFNKISSNFEGS-CFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I-- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA-~~v~~~~~~~F~~~-~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~-- 236 (311)
-..++|.|-.|+|||||| ..+.++. .-+.. +++. +.++......+...+...-..... ..++ .
T Consensus 162 GQr~~Ifg~~g~GKt~lal~~i~~~~--~~dv~~V~~~----IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r 235 (502)
T PRK09281 162 GQRELIIGDRQTGKTAIAIDTIINQK--GKDVICIYVA----IGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQ 235 (502)
T ss_pred CcEEEeecCCCCCchHHHHHHHHHhc--CCCeEEEEEE----ecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHH
Confidence 457899999999999996 4555544 33443 4444 333234455555555443111111 1111 0
Q ss_pred -------HHHHHHh--CCCeEEEEEecCCChH-HHHHh
Q 042778 237 -------ALSFRQL--SRRKVLIVLDDVTCFR-QIKSL 264 (311)
Q Consensus 237 -------~~l~~~L--~~kr~LlVLDdV~~~~-~l~~l 264 (311)
..+.+++ +++++|||+||+.... .+..+
T Consensus 236 ~~a~~~a~tiAEyfrd~G~~VLli~DdlTr~A~A~REi 273 (502)
T PRK09281 236 YLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQL 273 (502)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHH
Confidence 2223333 3799999999997543 34443
No 470
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.56 E-value=0.026 Score=48.49 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=22.6
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
+.|-+.|.+|+||||+|+++.+.++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 467789999999999999999865543
No 471
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=94.55 E-value=0.094 Score=50.66 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-..++|.|..|.|||||.+.+.....
T Consensus 163 Gq~~~I~G~sG~GKStLl~~I~~~~~ 188 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTLLGMIARNTE 188 (440)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45789999999999999998887643
No 472
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.55 E-value=0.65 Score=44.74 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=23.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..++.++|.+|+||||+|..++....
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999999998888754
No 473
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.54 E-value=0.054 Score=44.42 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=30.8
Q ss_pred cchhhhHHHHHHhhcccC-CCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 148 VGVESRVEEIESLLGAES-KDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 148 vGr~~~~~~l~~~L~~~~-~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.|.+..++.+.+++.... .....|+++|++|+|||||...+..+
T Consensus 81 ~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 81 FGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred ccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcC
Confidence 456666666666553221 22456789999999999999998764
No 474
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.54 E-value=0.025 Score=51.16 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.3
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
+|||.|..|+|||||++.+...+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC
Confidence 589999999999999999987654
No 475
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=94.53 E-value=0.073 Score=52.04 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=49.0
Q ss_pred eEEEEEeccCcchhHHHH-HHHHHhhccCcCce-EEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC---H-
Q 042778 168 VYALGIWGIGGIDRTTIA-RAIFNKISSNFEGS-CFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD---I- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA-~~v~~~~~~~F~~~-~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~---~- 236 (311)
-..++|.|-.|+|||||| ..+.++. .-+.. +++. +.++......+...+...-..... ..++ .
T Consensus 162 GQR~~I~g~~g~GKt~Lal~~i~~~~--~~dv~~V~~~----IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r 235 (502)
T PRK13343 162 GQRELIIGDRQTGKTAIAIDAIINQK--DSDVICVYVA----IGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQ 235 (502)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHhhc--CCCEEEEEEE----eccChHHHHHHHHHHHhcCccceeEEEEecccccHHHH
Confidence 457899999999999996 5666653 23443 4444 333234455555555443211111 0111 0
Q ss_pred -------HHHHHHh--CCCeEEEEEecCCCh
Q 042778 237 -------ALSFRQL--SRRKVLIVLDDVTCF 258 (311)
Q Consensus 237 -------~~l~~~L--~~kr~LlVLDdV~~~ 258 (311)
..+-+++ +++++|||+||+...
T Consensus 236 ~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (502)
T PRK13343 236 YLAPFAGCAIAEYFRDQGQDALIVYDDLSKH 266 (502)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecchHHH
Confidence 2334444 479999999999754
No 476
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=94.53 E-value=0.026 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.5
Q ss_pred EEEEeccCcchhHHHHHHHHHh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988765
No 477
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.52 E-value=0.046 Score=48.11 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=28.8
Q ss_pred HHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh-ccCcCceEEEe
Q 042778 158 ESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI-SSNFEGSCFLQ 203 (311)
Q Consensus 158 ~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~-~~~F~~~~wv~ 203 (311)
.+.|..+-..-.++.|.|..|.||||||..+.... ... ..+++++
T Consensus 14 d~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~ 59 (230)
T PRK08533 14 HKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVS 59 (230)
T ss_pred ehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEe
Confidence 33443332335699999999999999986655543 333 3445555
No 478
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.52 E-value=0.03 Score=47.52 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-.+++|.|..|.|||||.+.+....
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999988753
No 479
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.52 E-value=0.031 Score=46.99 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=26.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
-.+++|.|..|.|||||++.+..... ...+.+.+.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~ 60 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEE-PDSGSILID 60 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEC
Confidence 45899999999999999999986532 234445443
No 480
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.52 E-value=0.047 Score=46.96 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=23.7
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
..|+|.|..|.|||||.+.+.+.+...+
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~ 29 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQKY 29 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 3689999999999999999998765543
No 481
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.51 E-value=0.19 Score=51.51 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.++++++|..|+||||++..+....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4799999999999999999888764
No 482
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.13 Score=52.17 Aligned_cols=93 Identities=23% Similarity=0.338 Sum_probs=56.9
Q ss_pred CCccchhhhHHHHHHhhccc-------CCC---eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCC
Q 042778 145 NQLVGVESRVEEIESLLGAE-------SKD---VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGG 214 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~-------~~~---~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~ 214 (311)
+++=|.+....+|.+-+... +.+ ..=|.+||++|.|||-||++|+...+-.| +. +- +
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lS----VK----G 738 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LS----VK----G 738 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----Ee----ec----C
Confidence 45667888888887765431 122 34578899999999999999998765443 33 21 1
Q ss_pred hHHHHHHHHHHHhcCCCCCCCHHHHHHHh-CCCeEEEEEecCCC
Q 042778 215 LGFLQQKLLSKLLQDGIVIPDIALSFRQL-SRRKVLIVLDDVTC 257 (311)
Q Consensus 215 ~~~l~~~ll~~l~~~~~~~~~~~~l~~~L-~~kr~LlVLDdV~~ 257 (311)
. +|+.-..|+. ..+++.+.++- ..+.|.|.||.+++
T Consensus 739 P-----ELLNMYVGqS--E~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 739 P-----ELLNMYVGQS--EENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred H-----HHHHHHhcch--HHHHHHHHHHhhccCCeEEEeccccc
Confidence 1 2333222221 12223333333 34889999999874
No 483
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.48 E-value=0.057 Score=50.34 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=34.3
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+||.+..+..+.-.+.. ....-+.|.|..|.|||||++.+..-+
T Consensus 4 ~~ivgq~~~~~al~~~~~~--~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVID--PKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcC--CCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4678998888776544432 224457799999999999999998754
No 484
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.056 Score=51.51 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=21.4
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
|=-.++|++|.|||++..+++|.+.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC
Confidence 4456899999999999999998763
No 485
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=94.46 E-value=0.03 Score=45.62 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=19.1
Q ss_pred EEEeccCcchhHHHHHHHHHh
Q 042778 171 LGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~ 191 (311)
|.++|.+|+|||||...+.++
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998775
No 486
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=94.44 E-value=0.045 Score=49.33 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=22.2
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
++|+|.|=||+||||+|..+..-+..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~ 28 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAY 28 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 68888899999999999988777653
No 487
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=94.44 E-value=0.12 Score=49.54 Aligned_cols=86 Identities=15% Similarity=0.177 Sum_probs=51.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H----
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I---- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~---- 236 (311)
-..++|.|-.|+|||+|+..+.++... +.++|.. +.++......+...+...-..... ..++ .
T Consensus 140 GQkigIF~gaGvgk~~L~~~ia~~~~~--~v~Vfa~----iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~ 213 (436)
T PRK02118 140 SQKIPIFSVSGEPYNALLARIALQAEA--DIIILGG----MGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLL 213 (436)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHhhCC--CeEEEEE----eccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 346899999999999999998877543 4456665 444234455555544433111110 1111 0
Q ss_pred -----HHHHHHh---CCCeEEEEEecCCChH
Q 042778 237 -----ALSFRQL---SRRKVLIVLDDVTCFR 259 (311)
Q Consensus 237 -----~~l~~~L---~~kr~LlVLDdV~~~~ 259 (311)
-.+.+++ .++++||++||+-...
T Consensus 214 ~~~~AltiAEyfrd~g~~~VLli~DdlTr~a 244 (436)
T PRK02118 214 VPDMALAVAEKFALEGKKKVLVLLTDMTNFA 244 (436)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEeccCchHHH
Confidence 2333444 3489999999997643
No 488
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.44 E-value=0.064 Score=46.26 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=30.0
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.+++|.+..+..+.-... +..-+.+.|..|+|||+||+.+-.-
T Consensus 3 ~dI~GQe~aKrAL~iAAa----G~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA----GGHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH----CC--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhcCcHHHHHHHHHHHc----CCCCeEEECCCCCCHHHHHHHHHHh
Confidence 467888876666554333 2357889999999999999998763
No 489
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.43 E-value=0.032 Score=48.08 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-.+++|.|..|.|||||++.+.-..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998753
No 490
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=94.43 E-value=0.11 Score=50.82 Aligned_cols=86 Identities=22% Similarity=0.194 Sum_probs=49.0
Q ss_pred eEEEEEeccCcchhHHHH-HHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCCH-----
Q 042778 168 VYALGIWGIGGIDRTTIA-RAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPDI----- 236 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA-~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~~----- 236 (311)
-..++|.|-.|+|||||| ..+.++....+. ++++. +.++......+.+.+...-..... ..+..
T Consensus 143 GQR~~Ifg~~gtGKT~lal~~I~~q~~~dv~-~V~~~----IGer~~ev~~~~~~l~~~gal~~tvvV~atsd~~~~r~~ 217 (507)
T PRK07165 143 GQRELIIGDRQTGKTHIALNTIINQKNTNVK-CIYVA----IGQKRENLSRIYETLKEHDALKNTIIIDAPSTSPYEQYL 217 (507)
T ss_pred CCEEEeecCCCCCccHHHHHHHHHhcCCCeE-EEEEE----ccCChHHHHHHHHHhhhcCceeeeEEEEeCCCCHHHHHH
Confidence 457899999999999996 467776443332 24554 333244556666666543111100 00110
Q ss_pred -----HHHHHHhC-CCeEEEEEecCCCh
Q 042778 237 -----ALSFRQLS-RRKVLIVLDDVTCF 258 (311)
Q Consensus 237 -----~~l~~~L~-~kr~LlVLDdV~~~ 258 (311)
..+.++++ .+.+|||+||+...
T Consensus 218 ap~~a~tiAEyfrd~~dVLlv~DdLTr~ 245 (507)
T PRK07165 218 APYVAMAHAENISYNDDVLIVFDDLTKH 245 (507)
T ss_pred HHHHHHHHHHHHHhcCceEEEEcChHHH
Confidence 22333332 18999999999754
No 491
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.42 E-value=0.032 Score=48.19 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-.+++|.|..|.|||||++.+..-.
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999987753
No 492
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.41 E-value=0.032 Score=49.05 Aligned_cols=24 Identities=29% Similarity=0.327 Sum_probs=21.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 493
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.39 E-value=0.032 Score=45.27 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.2
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
+.|-++|..|.|||||++++-..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 35788999999999999999775
No 494
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.38 E-value=0.062 Score=53.34 Aligned_cols=50 Identities=14% Similarity=0.233 Sum_probs=40.5
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...++|....++++.+.+..-...-..|.|+|..|+|||++|+.+++...
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 56789999999999888765433344677999999999999999998743
No 495
>PRK14528 adenylate kinase; Provisional
Probab=94.38 E-value=0.037 Score=46.96 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.1
Q ss_pred EEEEEeccCcchhHHHHHHHHHhh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
+.|.|.|++|.||||+|+.+....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998765
No 496
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.38 E-value=0.032 Score=49.08 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999764
No 497
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.37 E-value=0.033 Score=48.09 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=21.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|.|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 498
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.37 E-value=0.03 Score=45.67 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=18.5
Q ss_pred EeccCcchhHHHHHHHHHhh
Q 042778 173 IWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 173 I~GmgGiGKTtLA~~v~~~~ 192 (311)
|.|.+|+||||+|+.++++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999875
No 499
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=94.37 E-value=0.041 Score=45.10 Aligned_cols=29 Identities=24% Similarity=0.577 Sum_probs=25.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
-.++.|.|..|.||||+++++..+++..|
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F 40 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKF 40 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcc
Confidence 34889999999999999999999987766
No 500
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=94.36 E-value=0.036 Score=50.58 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=23.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.-+|.|.|.+|+||||+|..+++++
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999886
Done!