Query 042778
Match_columns 311
No_of_seqs 284 out of 2672
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 16:22:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 9E-41 3.1E-45 282.8 7.7 130 5-134 22-183 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 1.7E-38 5.9E-43 264.6 7.4 119 13-131 3-152 (176)
3 2a5y_B CED-4; apoptosis; HET: 99.9 2.7E-24 9.1E-29 211.1 17.1 155 148-309 131-319 (549)
4 3h16_A TIR protein; bacteria T 99.9 6.4E-26 2.2E-30 186.7 3.8 86 13-99 15-101 (154)
5 3ub2_A TOLL/interleukin-1 rece 99.9 1.4E-23 4.8E-28 170.8 -0.3 86 13-100 5-93 (146)
6 1fyx_A TOLL-like receptor 2; b 99.8 1.3E-21 4.6E-26 159.8 1.4 82 15-98 2-87 (149)
7 2j67_A TOLL like receptor 10; 99.8 4.1E-21 1.4E-25 161.1 3.5 85 12-98 29-117 (178)
8 2js7_A Myeloid differentiation 99.8 5.7E-21 2E-25 157.8 3.6 85 13-99 11-99 (160)
9 3sfz_A APAF-1, apoptotic pepti 99.8 2.6E-19 8.8E-24 189.4 14.7 150 144-298 123-302 (1249)
10 1t3g_A X-linked interleukin-1 99.8 1.5E-20 5.1E-25 155.1 4.0 82 17-98 1-95 (159)
11 1vt4_I APAF-1 related killer D 99.8 4.7E-19 1.6E-23 180.9 11.8 145 146-297 129-312 (1221)
12 1z6t_A APAF-1, apoptotic prote 99.7 1.2E-17 4.1E-22 164.7 12.3 148 144-297 123-301 (591)
13 3j0a_A TOLL-like receptor 5; m 99.4 9.3E-14 3.2E-18 142.5 6.2 83 14-98 666-755 (844)
14 2qby_B CDC6 homolog 3, cell di 99.2 3.2E-10 1.1E-14 105.2 15.1 147 144-295 19-210 (384)
15 1w5s_A Origin recognition comp 99.2 2.5E-10 8.7E-15 106.8 14.2 146 144-294 21-227 (412)
16 2v1u_A Cell division control p 99.1 2.5E-09 8.7E-14 98.8 15.0 147 144-295 18-214 (387)
17 2qby_A CDC6 homolog 1, cell di 99.0 7.7E-10 2.6E-14 102.2 9.4 147 144-295 19-210 (386)
18 1fnn_A CDC6P, cell division co 98.9 3.6E-08 1.2E-12 91.2 15.3 147 144-295 16-206 (389)
19 2fna_A Conserved hypothetical 98.8 2.1E-08 7.1E-13 91.5 12.1 51 144-203 12-62 (357)
20 2qen_A Walker-type ATPase; unk 98.8 5.2E-09 1.8E-13 95.4 8.0 141 144-294 11-215 (350)
21 1njg_A DNA polymerase III subu 98.8 5.8E-08 2E-12 83.1 12.3 141 144-297 22-200 (250)
22 2chg_A Replication factor C sm 98.8 6.8E-08 2.3E-12 81.7 11.7 136 144-297 16-176 (226)
23 3te6_A Regulatory protein SIR3 98.7 1.5E-07 5.2E-12 85.5 11.9 145 146-295 21-211 (318)
24 1jbk_A CLPB protein; beta barr 98.6 2.3E-07 8E-12 76.4 9.0 48 144-193 21-68 (195)
25 1sxj_B Activator 1 37 kDa subu 98.5 3.4E-07 1.2E-11 82.4 10.7 134 145-296 21-180 (323)
26 3h4m_A Proteasome-activating n 98.5 6.2E-07 2.1E-11 79.7 10.4 146 144-309 16-216 (285)
27 2p65_A Hypothetical protein PF 98.4 5.5E-07 1.9E-11 74.0 7.9 49 144-194 21-69 (187)
28 1iqp_A RFCS; clamp loader, ext 98.3 1.4E-06 4.7E-11 78.5 8.4 136 144-297 24-184 (327)
29 2chq_A Replication factor C sm 98.3 5.2E-06 1.8E-10 74.4 11.1 135 144-297 16-176 (319)
30 3pvs_A Replication-associated 98.2 5E-06 1.7E-10 79.1 10.1 130 144-297 25-180 (447)
31 2qz4_A Paraplegin; AAA+, SPG7, 98.2 1.5E-05 5.1E-10 69.5 12.5 52 144-195 5-66 (262)
32 1sxj_A Activator 1 95 kDa subu 98.2 5.6E-06 1.9E-10 80.2 10.3 144 144-297 38-224 (516)
33 1jr3_A DNA polymerase III subu 98.1 2.8E-05 9.6E-10 71.3 13.5 141 144-295 15-191 (373)
34 3cf0_A Transitional endoplasmi 98.1 5.7E-05 2E-09 67.8 15.2 50 144-193 14-74 (301)
35 3syl_A Protein CBBX; photosynt 98.1 1.3E-05 4.6E-10 71.7 10.7 49 146-194 32-93 (309)
36 2w58_A DNAI, primosome compone 98.1 8.4E-06 2.9E-10 68.5 8.7 59 145-203 25-89 (202)
37 3eie_A Vacuolar protein sortin 98.1 1.4E-05 4.7E-10 72.5 9.9 52 144-195 17-78 (322)
38 1hqc_A RUVB; extended AAA-ATPa 98.1 2.3E-05 7.8E-10 70.6 10.7 51 144-194 11-64 (324)
39 3d8b_A Fidgetin-like protein 1 98.0 4.2E-05 1.4E-09 70.4 12.6 51 144-194 83-143 (357)
40 1xwi_A SKD1 protein; VPS4B, AA 98.0 9.1E-05 3.1E-09 67.2 14.4 49 144-192 11-69 (322)
41 3uk6_A RUVB-like 2; hexameric 98.0 7.9E-05 2.7E-09 68.3 13.0 52 144-195 43-97 (368)
42 1l8q_A Chromosomal replication 97.9 7.3E-05 2.5E-09 67.6 12.1 136 144-297 10-181 (324)
43 2z4s_A Chromosomal replication 97.9 1.5E-05 5E-10 75.7 7.4 113 168-296 130-277 (440)
44 1sxj_D Activator 1 41 kDa subu 97.9 3.7E-05 1.3E-09 69.9 9.8 145 144-297 36-207 (353)
45 1qvr_A CLPB protein; coiled co 97.9 9.1E-05 3.1E-09 76.0 12.8 48 144-193 169-216 (854)
46 2zan_A Vacuolar protein sortin 97.9 7.3E-05 2.5E-09 71.0 11.1 49 144-192 133-191 (444)
47 4b4t_J 26S protease regulatory 97.8 0.0004 1.4E-08 64.8 15.3 146 145-310 148-348 (405)
48 1d2n_A N-ethylmaleimide-sensit 97.8 5.1E-05 1.7E-09 66.8 8.9 51 144-194 32-90 (272)
49 3vfd_A Spastin; ATPase, microt 97.8 0.0001 3.5E-09 68.6 11.0 51 144-194 114-174 (389)
50 3b9p_A CG5977-PA, isoform A; A 97.8 6.8E-05 2.3E-09 66.8 9.4 52 144-195 20-81 (297)
51 2qp9_X Vacuolar protein sortin 97.8 6.6E-05 2.3E-09 69.1 9.3 52 144-195 50-111 (355)
52 4b4t_L 26S protease subunit RP 97.8 0.00043 1.5E-08 65.3 15.0 147 144-310 180-381 (437)
53 3u61_B DNA polymerase accessor 97.8 0.00016 5.3E-09 65.3 11.6 124 144-289 25-172 (324)
54 3ec2_A DNA replication protein 97.8 7.6E-05 2.6E-09 61.4 8.5 43 151-193 20-63 (180)
55 4b4t_H 26S protease regulatory 97.8 0.00063 2.2E-08 64.4 15.6 146 145-310 209-409 (467)
56 3hu3_A Transitional endoplasmi 97.8 0.00024 8E-09 68.3 12.8 51 144-194 203-264 (489)
57 3bos_A Putative DNA replicatio 97.8 1.4E-05 4.9E-10 68.3 3.8 58 144-203 27-87 (242)
58 1r6b_X CLPA protein; AAA+, N-t 97.7 0.00022 7.4E-09 72.1 12.8 48 144-193 185-232 (758)
59 1sxj_E Activator 1 40 kDa subu 97.7 0.00014 4.9E-09 66.2 10.4 47 144-192 13-60 (354)
60 3co5_A Putative two-component 97.7 1.4E-05 4.9E-10 63.6 3.1 48 146-193 5-52 (143)
61 3pxg_A Negative regulator of g 97.7 0.00021 7E-09 68.3 10.9 49 144-194 179-227 (468)
62 1ixz_A ATP-dependent metallopr 97.6 0.0004 1.4E-08 60.3 10.9 50 144-193 15-74 (254)
63 2ce7_A Cell division protein F 97.6 0.00077 2.6E-08 64.4 13.5 52 144-195 15-76 (476)
64 4b4t_M 26S protease regulatory 97.6 0.00033 1.1E-08 66.1 10.6 53 144-196 180-243 (434)
65 1lv7_A FTSH; alpha/beta domain 97.6 0.00014 4.7E-09 63.4 7.4 52 144-195 11-72 (257)
66 3cf2_A TER ATPase, transitiona 97.5 0.00059 2E-08 69.1 12.5 147 144-310 203-401 (806)
67 3n70_A Transport activator; si 97.5 5E-05 1.7E-09 60.5 3.7 47 146-192 2-48 (145)
68 1iy2_A ATP-dependent metallopr 97.5 0.0007 2.4E-08 59.7 11.1 50 144-193 39-98 (278)
69 1sxj_C Activator 1 40 kDa subu 97.5 0.00055 1.9E-08 62.3 10.7 134 145-295 25-182 (340)
70 4b4t_I 26S protease regulatory 97.5 0.00097 3.3E-08 62.6 12.1 53 144-196 181-244 (437)
71 4fcw_A Chaperone protein CLPB; 97.5 0.00022 7.6E-09 63.6 7.6 51 145-195 17-74 (311)
72 2x8a_A Nuclear valosin-contain 97.4 0.01 3.6E-07 52.2 17.7 51 144-194 9-70 (274)
73 3pfi_A Holliday junction ATP-d 97.4 9.2E-05 3.2E-09 67.1 4.1 53 144-196 28-83 (338)
74 3pxi_A Negative regulator of g 97.4 0.00076 2.6E-08 68.2 11.2 48 144-193 179-226 (758)
75 3t15_A Ribulose bisphosphate c 97.4 0.00022 7.5E-09 63.7 5.9 30 167-196 35-64 (293)
76 2c9o_A RUVB-like 1; hexameric 97.3 0.00054 1.8E-08 65.1 8.9 52 144-195 36-90 (456)
77 2dhr_A FTSH; AAA+ protein, hex 97.3 0.0026 8.9E-08 61.1 13.6 51 143-193 29-89 (499)
78 2qgz_A Helicase loader, putati 97.3 0.00058 2E-08 61.5 8.0 51 153-203 136-188 (308)
79 2gno_A DNA polymerase III, gam 97.3 0.0028 9.7E-08 56.9 12.0 127 149-295 1-152 (305)
80 1a5t_A Delta prime, HOLB; zinc 97.2 0.0046 1.6E-07 56.0 13.2 43 151-194 8-50 (334)
81 1ypw_A Transitional endoplasmi 97.1 0.00052 1.8E-08 69.9 6.2 53 144-196 203-266 (806)
82 2cvh_A DNA repair and recombin 97.1 0.0028 9.5E-08 53.2 9.8 33 168-203 20-52 (220)
83 1in4_A RUVB, holliday junction 97.1 0.00034 1.2E-08 63.7 4.1 51 145-195 25-78 (334)
84 2r62_A Cell division protease 97.1 0.00024 8.2E-09 62.2 2.9 53 144-196 10-72 (268)
85 1ofh_A ATP-dependent HSL prote 97.1 0.00034 1.2E-08 62.2 3.9 51 144-194 14-76 (310)
86 2bjv_A PSP operon transcriptio 97.0 0.0006 2E-08 59.6 5.0 49 145-193 6-54 (265)
87 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.00073 2.5E-08 61.2 5.6 24 168-191 123-146 (331)
88 1eiw_A Hypothetical protein MT 97.0 0.00039 1.3E-08 52.9 2.9 62 17-97 3-64 (111)
89 1qhx_A CPT, protein (chloramph 96.9 0.00045 1.5E-08 56.4 3.2 26 169-194 4-29 (178)
90 1rz3_A Hypothetical protein rb 96.9 0.0011 3.9E-08 55.5 5.3 44 150-193 3-47 (201)
91 3c8u_A Fructokinase; YP_612366 96.8 0.0011 3.8E-08 55.8 5.1 41 153-193 7-47 (208)
92 3kb2_A SPBC2 prophage-derived 96.8 0.00061 2.1E-08 55.0 3.3 25 169-193 2-26 (173)
93 4b4t_K 26S protease regulatory 96.8 0.0009 3.1E-08 63.0 4.7 53 144-196 171-234 (428)
94 3hws_A ATP-dependent CLP prote 96.8 0.0011 3.7E-08 60.9 4.8 47 146-192 16-75 (363)
95 3lw7_A Adenylate kinase relate 96.8 0.00061 2.1E-08 54.9 2.8 23 169-192 2-24 (179)
96 2ga8_A Hypothetical 39.9 kDa p 96.7 0.0011 3.6E-08 60.9 4.5 49 148-196 2-52 (359)
97 3trf_A Shikimate kinase, SK; a 96.7 0.00081 2.8E-08 55.2 3.2 26 168-193 5-30 (185)
98 3vaa_A Shikimate kinase, SK; s 96.7 0.00082 2.8E-08 56.2 3.2 26 168-193 25-50 (199)
99 3hr8_A Protein RECA; alpha and 96.7 0.014 4.8E-07 53.5 11.6 50 154-203 46-96 (356)
100 1ojl_A Transcriptional regulat 96.7 0.00094 3.2E-08 60.0 3.6 48 145-192 2-49 (304)
101 2r44_A Uncharacterized protein 96.7 0.0016 5.6E-08 58.7 5.1 49 144-196 26-74 (331)
102 2zr9_A Protein RECA, recombina 96.7 0.011 3.8E-07 54.1 10.7 50 154-203 46-96 (349)
103 1xp8_A RECA protein, recombina 96.6 0.017 5.7E-07 53.2 11.7 50 154-203 59-109 (366)
104 1odf_A YGR205W, hypothetical 3 96.6 0.0024 8.1E-08 57.0 5.5 29 165-193 28-56 (290)
105 1ly1_A Polynucleotide kinase; 96.5 0.0015 5.1E-08 53.1 3.4 22 169-190 3-24 (181)
106 1zuh_A Shikimate kinase; alpha 96.5 0.0014 4.8E-08 52.9 3.2 26 168-193 7-32 (168)
107 1kag_A SKI, shikimate kinase I 96.5 0.0011 3.8E-08 53.7 2.6 25 169-193 5-29 (173)
108 1zp6_A Hypothetical protein AT 96.5 0.0014 4.9E-08 53.9 3.1 24 168-191 9-32 (191)
109 4eun_A Thermoresistant glucoki 96.5 0.0022 7.5E-08 53.5 4.2 25 168-192 29-53 (200)
110 3iij_A Coilin-interacting nucl 96.4 0.0012 4E-08 54.1 2.3 25 168-192 11-35 (180)
111 1nks_A Adenylate kinase; therm 96.4 0.0018 6.1E-08 53.2 3.4 26 169-194 2-27 (194)
112 1v5w_A DMC1, meiotic recombina 96.4 0.016 5.4E-07 52.8 10.0 48 156-203 110-163 (343)
113 1um8_A ATP-dependent CLP prote 96.4 0.0026 9E-08 58.5 4.8 51 144-194 20-98 (376)
114 2rhm_A Putative kinase; P-loop 96.4 0.0021 7E-08 52.9 3.6 25 168-192 5-29 (193)
115 2jaq_A Deoxyguanosine kinase; 96.4 0.0017 5.9E-08 53.8 3.1 24 170-193 2-25 (205)
116 3tlx_A Adenylate kinase 2; str 96.4 0.0037 1.3E-07 54.0 5.2 41 152-192 13-53 (243)
117 2iyv_A Shikimate kinase, SK; t 96.3 0.0014 5E-08 53.7 2.4 25 169-193 3-27 (184)
118 3uie_A Adenylyl-sulfate kinase 96.3 0.0022 7.4E-08 53.6 3.5 27 167-193 24-50 (200)
119 3m6a_A ATP-dependent protease 96.3 0.0038 1.3E-07 60.6 5.7 53 144-196 80-136 (543)
120 1kht_A Adenylate kinase; phosp 96.3 0.0017 6E-08 53.2 2.8 25 169-193 4-28 (192)
121 3t61_A Gluconokinase; PSI-biol 96.3 0.0017 6E-08 54.1 2.8 25 168-192 18-42 (202)
122 2ze6_A Isopentenyl transferase 96.3 0.0023 7.8E-08 55.8 3.6 25 169-193 2-26 (253)
123 1via_A Shikimate kinase; struc 96.3 0.0018 6.3E-08 52.7 2.9 24 170-193 6-29 (175)
124 1kgd_A CASK, peripheral plasma 96.3 0.0018 6.2E-08 53.2 2.8 26 168-193 5-30 (180)
125 1knq_A Gluconate kinase; ALFA/ 96.3 0.0024 8E-08 51.9 3.5 25 168-192 8-32 (175)
126 2yvu_A Probable adenylyl-sulfa 96.3 0.0037 1.3E-07 51.3 4.6 27 168-194 13-39 (186)
127 2vli_A Antibiotic resistance p 96.3 0.0017 5.8E-08 53.0 2.4 26 168-193 5-30 (183)
128 1ukz_A Uridylate kinase; trans 96.3 0.003 1E-07 52.6 3.9 27 166-192 13-39 (203)
129 1uf9_A TT1252 protein; P-loop, 96.3 0.0027 9.3E-08 52.6 3.6 26 166-191 6-31 (203)
130 1uj2_A Uridine-cytidine kinase 96.2 0.0028 9.6E-08 55.0 3.8 28 166-193 20-47 (252)
131 1y63_A LMAJ004144AAA protein; 96.2 0.0024 8.1E-08 52.6 3.1 24 168-191 10-33 (184)
132 1tev_A UMP-CMP kinase; ploop, 96.2 0.0028 9.5E-08 52.1 3.5 25 168-192 3-27 (196)
133 3cm0_A Adenylate kinase; ATP-b 96.2 0.0027 9.2E-08 52.0 3.3 25 168-192 4-28 (186)
134 2pt5_A Shikimate kinase, SK; a 96.2 0.0028 9.7E-08 50.9 3.4 24 170-193 2-25 (168)
135 1e6c_A Shikimate kinase; phosp 96.2 0.0019 6.6E-08 52.2 2.4 25 169-193 3-27 (173)
136 2bdt_A BH3686; alpha-beta prot 96.2 0.0028 9.7E-08 52.2 3.4 23 169-191 3-25 (189)
137 2kjq_A DNAA-related protein; s 96.2 0.0037 1.3E-07 49.9 4.0 37 167-203 35-71 (149)
138 2c95_A Adenylate kinase 1; tra 96.2 0.0023 7.9E-08 52.7 2.8 25 168-192 9-33 (196)
139 1sky_E F1-ATPase, F1-ATP synth 96.2 0.0066 2.3E-07 57.6 6.2 34 170-203 153-187 (473)
140 2plr_A DTMP kinase, probable t 96.2 0.0051 1.8E-07 51.2 5.0 28 168-195 4-31 (213)
141 3a00_A Guanylate kinase, GMP k 96.1 0.0026 8.8E-08 52.5 2.9 28 169-196 2-29 (186)
142 2bwj_A Adenylate kinase 5; pho 96.1 0.0025 8.6E-08 52.7 2.8 26 168-193 12-37 (199)
143 2if2_A Dephospho-COA kinase; a 96.1 0.0028 9.5E-08 52.8 3.1 22 169-190 2-23 (204)
144 3ice_A Transcription terminati 96.1 0.0018 6.2E-08 60.0 2.0 27 168-194 174-200 (422)
145 2qt1_A Nicotinamide riboside k 96.1 0.0034 1.2E-07 52.5 3.6 26 167-192 20-45 (207)
146 3dm5_A SRP54, signal recogniti 96.1 0.054 1.9E-06 51.0 12.1 27 168-194 100-126 (443)
147 1fx0_B ATP synthase beta chain 96.1 0.013 4.5E-07 55.8 7.9 88 168-259 165-279 (498)
148 1g8p_A Magnesium-chelatase 38 96.1 0.0032 1.1E-07 56.9 3.5 48 144-193 23-70 (350)
149 1qf9_A UMP/CMP kinase, protein 96.1 0.0035 1.2E-07 51.4 3.4 26 168-193 6-31 (194)
150 1cke_A CK, MSSA, protein (cyti 96.1 0.0032 1.1E-07 53.3 3.3 24 169-192 6-29 (227)
151 2qor_A Guanylate kinase; phosp 96.1 0.0025 8.4E-08 53.4 2.5 26 168-193 12-37 (204)
152 2cdn_A Adenylate kinase; phosp 96.0 0.0036 1.2E-07 52.1 3.4 26 168-193 20-45 (201)
153 1ex7_A Guanylate kinase; subst 96.0 0.0023 8E-08 53.2 2.2 29 169-197 2-30 (186)
154 3tr0_A Guanylate kinase, GMP k 96.0 0.0034 1.2E-07 52.2 3.2 25 168-192 7-31 (205)
155 1jjv_A Dephospho-COA kinase; P 96.0 0.0034 1.2E-07 52.4 3.2 22 169-190 3-24 (206)
156 3tau_A Guanylate kinase, GMP k 96.0 0.0035 1.2E-07 52.7 3.3 27 168-194 8-34 (208)
157 2pbr_A DTMP kinase, thymidylat 96.0 0.0037 1.3E-07 51.3 3.3 24 170-193 2-25 (195)
158 2j41_A Guanylate kinase; GMP, 96.0 0.0035 1.2E-07 52.1 3.2 25 168-192 6-30 (207)
159 1g41_A Heat shock protein HSLU 96.0 0.0053 1.8E-07 58.0 4.6 53 144-196 14-78 (444)
160 1aky_A Adenylate kinase; ATP:A 96.0 0.0036 1.2E-07 53.0 3.1 26 168-193 4-29 (220)
161 1nn5_A Similar to deoxythymidy 96.0 0.0052 1.8E-07 51.4 4.1 28 168-195 9-36 (215)
162 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0041 1.4E-07 54.3 3.5 25 168-192 4-28 (260)
163 2p5t_B PEZT; postsegregational 96.0 0.0074 2.5E-07 52.4 5.1 26 168-193 32-57 (253)
164 2grj_A Dephospho-COA kinase; T 95.9 0.0045 1.5E-07 51.7 3.5 26 167-192 11-36 (192)
165 1gvn_B Zeta; postsegregational 95.9 0.007 2.4E-07 53.8 5.0 26 167-192 32-57 (287)
166 3asz_A Uridine kinase; cytidin 95.9 0.0045 1.6E-07 51.8 3.5 27 167-193 5-31 (211)
167 1xjc_A MOBB protein homolog; s 95.9 0.0064 2.2E-07 49.8 4.2 29 167-195 3-31 (169)
168 4gp7_A Metallophosphoesterase; 95.9 0.0034 1.2E-07 51.2 2.6 22 168-189 9-30 (171)
169 2ck3_D ATP synthase subunit be 95.9 0.019 6.4E-07 54.5 7.8 88 168-259 153-266 (482)
170 2bbw_A Adenylate kinase 4, AK4 95.9 0.0044 1.5E-07 53.5 3.3 25 168-192 27-51 (246)
171 3fwy_A Light-independent proto 95.9 0.0046 1.6E-07 55.8 3.5 29 166-194 46-74 (314)
172 3nbx_X ATPase RAVA; AAA+ ATPas 95.9 0.0053 1.8E-07 59.0 4.1 45 145-193 22-66 (500)
173 2wwf_A Thymidilate kinase, put 95.9 0.0039 1.3E-07 52.1 2.9 27 168-194 10-36 (212)
174 4e22_A Cytidylate kinase; P-lo 95.9 0.0043 1.5E-07 53.9 3.2 25 168-192 27-51 (252)
175 1ye8_A Protein THEP1, hypothet 95.8 0.0047 1.6E-07 50.9 3.0 24 170-193 2-25 (178)
176 1gtv_A TMK, thymidylate kinase 95.8 0.0034 1.1E-07 52.6 2.0 24 170-193 2-25 (214)
177 3nwj_A ATSK2; P loop, shikimat 95.7 0.0039 1.3E-07 54.4 2.3 25 169-193 49-73 (250)
178 2z0h_A DTMP kinase, thymidylat 95.7 0.0057 1.9E-07 50.4 3.3 24 170-193 2-25 (197)
179 3ake_A Cytidylate kinase; CMP 95.7 0.006 2.1E-07 50.7 3.4 24 170-193 4-27 (208)
180 1zd8_A GTP:AMP phosphotransfer 95.7 0.0051 1.7E-07 52.3 3.0 25 168-192 7-31 (227)
181 3fb4_A Adenylate kinase; psych 95.7 0.0057 2E-07 51.4 3.3 23 170-192 2-24 (216)
182 3p32_A Probable GTPase RV1496/ 95.7 0.02 6.7E-07 52.4 7.1 39 154-192 65-103 (355)
183 2pez_A Bifunctional 3'-phospho 95.7 0.0067 2.3E-07 49.4 3.5 25 168-192 5-29 (179)
184 2v54_A DTMP kinase, thymidylat 95.7 0.0056 1.9E-07 50.8 3.0 25 168-192 4-28 (204)
185 3tqc_A Pantothenate kinase; bi 95.7 0.01 3.6E-07 53.6 4.9 28 166-193 90-117 (321)
186 4a74_A DNA repair and recombin 95.7 0.014 4.9E-07 49.1 5.6 36 168-203 25-66 (231)
187 3dl0_A Adenylate kinase; phosp 95.7 0.0063 2.1E-07 51.2 3.3 23 170-192 2-24 (216)
188 1zu4_A FTSY; GTPase, signal re 95.7 0.018 6.2E-07 52.0 6.5 28 167-194 104-131 (320)
189 1m7g_A Adenylylsulfate kinase; 95.6 0.0071 2.4E-07 50.8 3.5 26 168-193 25-50 (211)
190 3e70_C DPA, signal recognition 95.6 0.018 6.3E-07 52.1 6.4 28 167-194 128-155 (328)
191 3kl4_A SRP54, signal recogniti 95.6 0.04 1.4E-06 51.9 8.9 26 168-193 97-122 (433)
192 3k1j_A LON protease, ATP-depen 95.6 0.011 3.7E-07 58.1 5.1 49 144-196 40-88 (604)
193 3vr4_D V-type sodium ATPase su 95.6 0.0082 2.8E-07 56.7 4.0 85 170-258 153-260 (465)
194 3ney_A 55 kDa erythrocyte memb 95.6 0.0069 2.4E-07 50.8 3.2 27 168-194 19-45 (197)
195 3bh0_A DNAB-like replicative h 95.5 0.033 1.1E-06 50.0 7.9 36 168-203 68-103 (315)
196 1lvg_A Guanylate kinase, GMP k 95.5 0.0054 1.8E-07 51.2 2.4 24 169-192 5-28 (198)
197 1n0w_A DNA repair protein RAD5 95.5 0.028 9.7E-07 47.6 7.1 48 156-203 12-65 (243)
198 1vma_A Cell division protein F 95.5 0.022 7.5E-07 51.1 6.5 29 167-195 103-131 (306)
199 2f6r_A COA synthase, bifunctio 95.5 0.0078 2.7E-07 53.2 3.6 24 167-190 74-97 (281)
200 1zak_A Adenylate kinase; ATP:A 95.5 0.0063 2.2E-07 51.5 2.8 26 168-193 5-30 (222)
201 1znw_A Guanylate kinase, GMP k 95.5 0.007 2.4E-07 50.7 3.1 25 168-192 20-44 (207)
202 1vht_A Dephospho-COA kinase; s 95.5 0.0079 2.7E-07 50.7 3.4 23 168-190 4-26 (218)
203 3pxi_A Negative regulator of g 95.5 0.018 6E-07 58.1 6.4 51 144-194 490-547 (758)
204 2jeo_A Uridine-cytidine kinase 95.5 0.0092 3.2E-07 51.4 3.7 26 167-192 24-49 (245)
205 3zvl_A Bifunctional polynucleo 95.5 0.042 1.4E-06 51.3 8.5 26 167-192 257-282 (416)
206 3aez_A Pantothenate kinase; tr 95.5 0.0086 2.9E-07 53.9 3.6 28 166-193 88-115 (312)
207 2hf9_A Probable hydrogenase ni 95.4 0.014 4.8E-07 49.1 4.7 38 153-192 25-62 (226)
208 1tue_A Replication protein E1; 95.4 0.014 4.9E-07 49.2 4.6 41 153-194 44-84 (212)
209 2wsm_A Hydrogenase expression/ 95.4 0.018 6.3E-07 48.2 5.4 45 149-195 13-57 (221)
210 2px0_A Flagellar biosynthesis 95.4 0.0095 3.3E-07 53.2 3.7 27 167-193 104-130 (296)
211 1j8m_F SRP54, signal recogniti 95.4 0.024 8.2E-07 50.6 6.2 27 168-194 98-124 (297)
212 3be4_A Adenylate kinase; malar 95.3 0.0084 2.9E-07 50.6 3.0 24 169-192 6-29 (217)
213 3d3q_A TRNA delta(2)-isopenten 95.3 0.01 3.5E-07 54.0 3.6 25 169-193 8-32 (340)
214 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.014 4.7E-07 49.1 4.2 36 168-203 23-58 (235)
215 1ak2_A Adenylate kinase isoenz 95.3 0.0094 3.2E-07 50.9 3.1 26 168-193 16-41 (233)
216 3r20_A Cytidylate kinase; stru 95.3 0.0096 3.3E-07 51.3 3.1 26 168-193 9-34 (233)
217 3umf_A Adenylate kinase; rossm 95.3 0.012 4.2E-07 50.1 3.8 27 166-192 27-53 (217)
218 3jvv_A Twitching mobility prot 95.3 0.0036 1.2E-07 57.5 0.5 27 168-194 123-149 (356)
219 1e4v_A Adenylate kinase; trans 95.3 0.011 3.6E-07 49.8 3.3 23 170-192 2-24 (214)
220 1rj9_A FTSY, signal recognitio 95.2 0.016 5.4E-07 52.0 4.6 28 167-194 101-128 (304)
221 3io5_A Recombination and repai 95.2 0.098 3.4E-06 47.1 9.7 34 170-203 30-65 (333)
222 1htw_A HI0065; nucleotide-bind 95.2 0.018 6.3E-07 46.3 4.6 26 167-192 32-57 (158)
223 1z6g_A Guanylate kinase; struc 95.2 0.0084 2.9E-07 50.9 2.6 25 168-192 23-47 (218)
224 2ehv_A Hypothetical protein PH 95.2 0.0097 3.3E-07 50.8 3.1 24 168-191 30-53 (251)
225 2xb4_A Adenylate kinase; ATP-b 95.2 0.011 3.7E-07 50.3 3.2 23 170-192 2-24 (223)
226 1svm_A Large T antigen; AAA+ f 95.2 0.019 6.4E-07 53.1 5.0 37 156-192 157-193 (377)
227 2xxa_A Signal recognition part 95.2 0.018 6.3E-07 54.2 5.0 28 167-194 99-126 (433)
228 2f1r_A Molybdopterin-guanine d 95.1 0.0086 3E-07 49.0 2.3 26 169-194 3-28 (171)
229 3crm_A TRNA delta(2)-isopenten 95.1 0.01 3.6E-07 53.6 3.1 26 168-193 5-30 (323)
230 1ltq_A Polynucleotide kinase; 95.1 0.012 4.2E-07 52.0 3.5 23 169-191 3-25 (301)
231 3l0o_A Transcription terminati 95.1 0.061 2.1E-06 49.8 8.1 37 157-194 165-201 (427)
232 2eyu_A Twitching motility prot 95.1 0.016 5.5E-07 50.7 4.2 36 167-202 24-59 (261)
233 1r6b_X CLPA protein; AAA+, N-t 95.1 0.014 4.7E-07 58.9 4.2 50 144-193 457-513 (758)
234 2dr3_A UPF0273 protein PH0284; 95.1 0.017 6E-07 49.1 4.3 36 168-203 23-58 (247)
235 1a7j_A Phosphoribulokinase; tr 95.1 0.0075 2.6E-07 53.7 1.9 27 167-193 4-30 (290)
236 1u94_A RECA protein, recombina 95.0 0.033 1.1E-06 51.0 6.2 50 154-203 48-98 (356)
237 3a8t_A Adenylate isopentenyltr 95.0 0.011 3.7E-07 53.8 2.8 26 168-193 40-65 (339)
238 1sq5_A Pantothenate kinase; P- 95.0 0.014 4.9E-07 52.2 3.7 28 166-193 78-105 (308)
239 2i3b_A HCR-ntpase, human cance 95.0 0.011 3.6E-07 49.3 2.6 23 170-192 3-25 (189)
240 1q3t_A Cytidylate kinase; nucl 95.0 0.013 4.5E-07 50.1 3.3 26 167-192 15-40 (236)
241 3lnc_A Guanylate kinase, GMP k 95.0 0.0084 2.9E-07 51.1 2.0 25 168-192 27-52 (231)
242 1s96_A Guanylate kinase, GMP k 95.0 0.012 4.2E-07 50.1 3.0 26 168-193 16-41 (219)
243 3b9q_A Chloroplast SRP recepto 94.9 0.023 7.8E-07 50.9 4.7 26 168-193 100-125 (302)
244 2yhs_A FTSY, cell division pro 94.8 0.039 1.3E-06 52.7 6.2 35 168-203 293-327 (503)
245 1np6_A Molybdopterin-guanine d 94.8 0.015 5.3E-07 47.6 3.0 26 168-193 6-31 (174)
246 2c61_A A-type ATP synthase non 94.8 0.016 5.6E-07 54.8 3.5 86 169-258 153-261 (469)
247 3b85_A Phosphate starvation-in 94.8 0.013 4.5E-07 49.5 2.6 23 169-191 23-45 (208)
248 4eaq_A DTMP kinase, thymidylat 94.8 0.039 1.3E-06 47.1 5.6 28 167-194 25-52 (229)
249 2z43_A DNA repair and recombin 94.8 0.056 1.9E-06 48.6 7.0 96 156-257 95-214 (324)
250 2onk_A Molybdate/tungstate ABC 94.7 0.016 5.4E-07 50.1 3.1 25 166-191 23-47 (240)
251 1cr0_A DNA primase/helicase; R 94.7 0.024 8.2E-07 50.1 4.3 36 168-203 35-71 (296)
252 3tif_A Uncharacterized ABC tra 94.7 0.015 5.3E-07 50.0 2.9 24 168-191 31-54 (235)
253 2pcj_A ABC transporter, lipopr 94.7 0.013 4.5E-07 50.0 2.4 24 168-191 30-53 (224)
254 1yrb_A ATP(GTP)binding protein 94.7 0.033 1.1E-06 48.0 5.0 26 168-193 14-39 (262)
255 2v3c_C SRP54, signal recogniti 94.7 0.02 6.9E-07 53.9 3.8 26 168-193 99-124 (432)
256 1ls1_A Signal recognition part 94.7 0.029 9.9E-07 50.0 4.7 28 167-194 97-124 (295)
257 1ypw_A Transitional endoplasmi 94.6 0.013 4.4E-07 59.6 2.6 53 144-196 476-539 (806)
258 1cp2_A CP2, nitrogenase iron p 94.6 0.033 1.1E-06 48.3 4.9 27 169-195 2-28 (269)
259 3hjn_A DTMP kinase, thymidylat 94.6 0.078 2.7E-06 44.2 6.9 34 170-203 2-35 (197)
260 2og2_A Putative signal recogni 94.6 0.031 1E-06 51.3 4.7 26 168-193 157-182 (359)
261 2d2e_A SUFC protein; ABC-ATPas 94.6 0.019 6.3E-07 49.9 3.1 23 169-191 30-52 (250)
262 2qi9_C Vitamin B12 import ATP- 94.5 0.019 6.6E-07 49.9 3.1 25 169-193 27-51 (249)
263 2cbz_A Multidrug resistance-as 94.5 0.016 5.4E-07 50.0 2.5 25 168-192 31-55 (237)
264 3end_A Light-independent proto 94.5 0.034 1.2E-06 49.4 4.8 28 167-194 40-67 (307)
265 2p67_A LAO/AO transport system 94.5 0.054 1.8E-06 49.2 6.2 29 164-192 52-80 (341)
266 3exa_A TRNA delta(2)-isopenten 94.5 0.022 7.7E-07 51.2 3.5 25 168-192 3-27 (322)
267 1b0u_A Histidine permease; ABC 94.5 0.016 5.6E-07 50.7 2.5 24 168-191 32-55 (262)
268 4a1f_A DNAB helicase, replicat 94.5 0.086 2.9E-06 47.9 7.4 51 168-225 46-96 (338)
269 3gqb_B V-type ATP synthase bet 94.5 0.027 9.4E-07 53.1 4.2 25 169-193 148-172 (464)
270 2dyk_A GTP-binding protein; GT 94.5 0.024 8.3E-07 44.4 3.3 23 169-191 2-24 (161)
271 2zu0_C Probable ATP-dependent 94.4 0.02 6.9E-07 50.2 3.1 24 168-191 46-69 (267)
272 3oaa_A ATP synthase subunit al 94.4 0.055 1.9E-06 51.6 6.2 84 169-258 163-266 (513)
273 1g8f_A Sulfate adenylyltransfe 94.4 0.034 1.2E-06 53.4 4.9 46 149-194 376-421 (511)
274 1g5t_A COB(I)alamin adenosyltr 94.4 0.056 1.9E-06 45.2 5.6 121 168-309 28-171 (196)
275 1ji0_A ABC transporter; ATP bi 94.4 0.017 5.9E-07 49.8 2.5 24 168-191 32-55 (240)
276 1g6h_A High-affinity branched- 94.4 0.017 5.9E-07 50.3 2.5 24 168-191 33-56 (257)
277 3gfo_A Cobalt import ATP-bindi 94.4 0.02 6.7E-07 50.6 2.9 23 169-191 35-57 (275)
278 2h92_A Cytidylate kinase; ross 94.4 0.018 6.2E-07 48.3 2.6 24 169-192 4-27 (219)
279 3sr0_A Adenylate kinase; phosp 94.4 0.024 8.2E-07 47.8 3.3 23 170-192 2-24 (206)
280 2qe7_A ATP synthase subunit al 94.4 0.045 1.5E-06 52.2 5.5 84 169-258 163-266 (502)
281 2ocp_A DGK, deoxyguanosine kin 94.4 0.026 8.9E-07 48.3 3.6 26 168-193 2-27 (241)
282 1oix_A RAS-related protein RAB 94.4 0.023 7.8E-07 46.7 3.1 24 168-191 29-52 (191)
283 3hyn_A Putative signal transdu 94.4 0.08 2.7E-06 43.4 6.1 64 34-97 33-105 (189)
284 2j37_W Signal recognition part 94.4 0.04 1.4E-06 52.9 5.2 27 167-193 100-126 (504)
285 3fdi_A Uncharacterized protein 94.4 0.025 8.7E-07 47.3 3.4 28 168-195 6-33 (201)
286 4g1u_C Hemin import ATP-bindin 94.4 0.02 6.9E-07 50.2 2.8 24 168-191 37-60 (266)
287 4edh_A DTMP kinase, thymidylat 94.3 0.08 2.7E-06 44.7 6.5 31 168-198 6-37 (213)
288 2pze_A Cystic fibrosis transme 94.3 0.019 6.4E-07 49.2 2.5 25 168-192 34-58 (229)
289 2ck3_A ATP synthase subunit al 94.3 0.037 1.3E-06 52.9 4.7 86 169-258 163-274 (510)
290 2olj_A Amino acid ABC transpor 94.3 0.019 6.4E-07 50.4 2.5 24 168-191 50-73 (263)
291 1mv5_A LMRA, multidrug resista 94.3 0.021 7.1E-07 49.3 2.8 24 168-191 28-51 (243)
292 1u0j_A DNA replication protein 94.3 0.044 1.5E-06 48.1 4.8 37 155-191 91-127 (267)
293 2ff7_A Alpha-hemolysin translo 94.3 0.02 6.8E-07 49.7 2.5 24 168-191 35-58 (247)
294 3foz_A TRNA delta(2)-isopenten 94.2 0.028 9.5E-07 50.5 3.5 25 168-192 10-34 (316)
295 1sgw_A Putative ABC transporte 94.2 0.017 5.7E-07 49.1 2.0 23 169-191 36-58 (214)
296 2r9v_A ATP synthase subunit al 94.2 0.044 1.5E-06 52.3 5.0 84 169-258 176-279 (515)
297 3cmu_A Protein RECA, recombina 94.2 0.085 2.9E-06 58.3 7.8 48 156-203 1414-1462(2050)
298 1vpl_A ABC transporter, ATP-bi 94.2 0.02 7E-07 49.9 2.5 24 168-191 41-64 (256)
299 2r6a_A DNAB helicase, replicat 94.2 0.089 3.1E-06 49.6 7.2 54 149-203 185-239 (454)
300 2ghi_A Transport protein; mult 94.2 0.021 7.1E-07 49.9 2.5 25 168-192 46-70 (260)
301 1qvr_A CLPB protein; coiled co 94.2 0.056 1.9E-06 55.3 6.1 50 145-194 558-614 (854)
302 3cr8_A Sulfate adenylyltranfer 94.1 0.043 1.5E-06 53.3 4.9 27 168-194 369-395 (552)
303 2ixe_A Antigen peptide transpo 94.1 0.021 7.4E-07 50.2 2.5 24 168-191 45-68 (271)
304 1puj_A YLQF, conserved hypothe 94.1 0.19 6.3E-06 44.4 8.7 117 61-191 13-143 (282)
305 2yz2_A Putative ABC transporte 94.1 0.022 7.4E-07 50.0 2.5 24 168-191 33-56 (266)
306 2afh_E Nitrogenase iron protei 94.1 0.043 1.5E-06 48.3 4.5 27 168-194 2-28 (289)
307 2f9l_A RAB11B, member RAS onco 94.1 0.029 1E-06 46.2 3.2 24 168-191 5-28 (199)
308 2wji_A Ferrous iron transport 94.1 0.028 9.7E-07 44.8 3.0 23 169-191 4-26 (165)
309 1nlf_A Regulatory protein REPA 94.1 0.025 8.7E-07 49.6 3.0 26 168-193 30-55 (279)
310 2axn_A 6-phosphofructo-2-kinas 94.1 0.045 1.5E-06 52.7 4.9 30 167-196 34-63 (520)
311 2ce2_X GTPase HRAS; signaling 94.1 0.026 9E-07 44.2 2.8 22 170-191 5-26 (166)
312 2i1q_A DNA repair and recombin 94.1 0.1 3.5E-06 46.7 7.0 37 155-191 85-121 (322)
313 2qm8_A GTPase/ATPase; G protei 94.1 0.08 2.8E-06 48.0 6.3 36 157-192 44-79 (337)
314 2v9p_A Replication protein E1; 94.1 0.028 9.7E-07 50.3 3.2 26 167-192 125-150 (305)
315 2ihy_A ABC transporter, ATP-bi 94.1 0.023 7.7E-07 50.3 2.5 24 168-191 47-70 (279)
316 1pzn_A RAD51, DNA repair and r 94.0 0.035 1.2E-06 50.7 3.9 47 157-203 120-172 (349)
317 2nq2_C Hypothetical ABC transp 94.0 0.024 8.1E-07 49.4 2.6 23 169-191 32-54 (253)
318 2q6t_A DNAB replication FORK h 94.0 0.096 3.3E-06 49.3 7.0 71 148-226 181-252 (444)
319 2vp4_A Deoxynucleoside kinase; 94.0 0.019 6.5E-07 49.0 1.9 25 167-191 19-43 (230)
320 2ged_A SR-beta, signal recogni 94.0 0.034 1.2E-06 45.3 3.3 25 167-191 47-71 (193)
321 2qmh_A HPR kinase/phosphorylas 94.0 0.032 1.1E-06 46.8 3.1 24 169-192 35-58 (205)
322 1tq4_A IIGP1, interferon-induc 93.9 0.032 1.1E-06 52.2 3.4 35 156-190 57-91 (413)
323 3mfy_A V-type ATP synthase alp 93.9 0.079 2.7E-06 51.1 6.2 49 168-222 227-275 (588)
324 1z2a_A RAS-related protein RAB 93.9 0.042 1.4E-06 43.3 3.7 24 168-191 5-28 (168)
325 3con_A GTPase NRAS; structural 93.9 0.03 1E-06 45.5 2.9 23 169-191 22-44 (190)
326 3ld9_A DTMP kinase, thymidylat 93.9 0.093 3.2E-06 44.7 6.0 34 167-200 20-55 (223)
327 3gmt_A Adenylate kinase; ssgci 93.9 0.032 1.1E-06 47.9 3.0 25 168-192 8-32 (230)
328 3kta_A Chromosome segregation 93.8 0.032 1.1E-06 45.3 3.0 23 169-191 27-49 (182)
329 2wjg_A FEOB, ferrous iron tran 93.8 0.036 1.2E-06 44.9 3.2 24 168-191 7-30 (188)
330 3sop_A Neuronal-specific septi 93.8 0.033 1.1E-06 49.0 3.1 22 170-191 4-25 (270)
331 2zej_A Dardarin, leucine-rich 93.8 0.031 1E-06 45.5 2.6 21 170-190 4-24 (184)
332 2r8r_A Sensor protein; KDPD, P 93.7 0.057 2E-06 46.2 4.4 30 169-198 7-37 (228)
333 3ea0_A ATPase, para family; al 93.7 0.075 2.5E-06 45.1 5.2 29 167-195 3-32 (245)
334 4dzz_A Plasmid partitioning pr 93.7 0.058 2E-06 44.5 4.3 26 169-194 2-28 (206)
335 3kjh_A CO dehydrogenase/acetyl 93.7 0.064 2.2E-06 45.5 4.7 25 171-195 3-27 (254)
336 3nh6_A ATP-binding cassette SU 93.7 0.031 1.1E-06 50.1 2.7 24 168-191 80-103 (306)
337 3eph_A TRNA isopentenyltransfe 93.6 0.04 1.4E-06 51.2 3.5 24 169-192 3-26 (409)
338 1u8z_A RAS-related protein RAL 93.6 0.037 1.3E-06 43.5 2.9 24 168-191 4-27 (168)
339 3bgw_A DNAB-like replicative h 93.6 0.11 3.6E-06 49.1 6.4 55 148-203 178-232 (444)
340 2ffh_A Protein (FFH); SRP54, s 93.6 0.067 2.3E-06 50.2 5.0 29 167-195 97-125 (425)
341 2pjz_A Hypothetical protein ST 93.6 0.031 1.1E-06 48.9 2.5 24 169-192 31-54 (263)
342 1fzq_A ADP-ribosylation factor 93.6 0.057 1.9E-06 43.7 4.0 26 166-191 14-39 (181)
343 3v9p_A DTMP kinase, thymidylat 93.5 0.084 2.9E-06 45.1 5.1 28 168-195 25-52 (227)
344 1bif_A 6-phosphofructo-2-kinas 93.5 0.059 2E-06 51.1 4.6 29 168-196 39-67 (469)
345 3t1o_A Gliding protein MGLA; G 93.5 0.043 1.5E-06 44.5 3.2 27 168-194 14-40 (198)
346 4hlc_A DTMP kinase, thymidylat 93.5 0.071 2.4E-06 44.8 4.6 30 169-198 3-32 (205)
347 1lw7_A Transcriptional regulat 93.5 0.044 1.5E-06 50.2 3.5 26 168-193 170-195 (365)
348 1c1y_A RAS-related protein RAP 93.4 0.043 1.5E-06 43.2 3.0 23 169-191 4-26 (167)
349 2nzj_A GTP-binding protein REM 93.4 0.051 1.8E-06 43.1 3.5 24 168-191 4-27 (175)
350 1nij_A Hypothetical protein YJ 93.4 0.044 1.5E-06 49.2 3.3 26 167-192 3-28 (318)
351 1p5z_B DCK, deoxycytidine kina 93.4 0.026 9E-07 49.0 1.7 27 167-193 23-49 (263)
352 3hdt_A Putative kinase; struct 93.4 0.047 1.6E-06 46.6 3.2 25 168-192 14-38 (223)
353 3fvq_A Fe(3+) IONS import ATP- 93.3 0.04 1.4E-06 50.5 3.0 24 168-191 30-53 (359)
354 1fx0_A ATP synthase alpha chai 93.3 0.058 2E-06 51.5 4.1 82 169-258 164-267 (507)
355 1z0j_A RAB-22, RAS-related pro 93.3 0.044 1.5E-06 43.3 2.9 24 168-191 6-29 (170)
356 2ewv_A Twitching motility prot 93.3 0.058 2E-06 49.7 4.0 28 168-195 136-163 (372)
357 1z08_A RAS-related protein RAB 93.3 0.043 1.5E-06 43.4 2.8 24 168-191 6-29 (170)
358 3lv8_A DTMP kinase, thymidylat 93.3 0.11 3.8E-06 44.6 5.6 36 168-203 27-63 (236)
359 1ek0_A Protein (GTP-binding pr 93.3 0.044 1.5E-06 43.1 2.9 22 170-191 5-26 (170)
360 3cf2_A TER ATPase, transitiona 93.3 0.038 1.3E-06 56.0 2.9 52 144-195 476-538 (806)
361 3tui_C Methionine import ATP-b 93.3 0.043 1.5E-06 50.4 3.1 24 168-191 54-77 (366)
362 2erx_A GTP-binding protein DI- 93.3 0.043 1.5E-06 43.3 2.7 23 169-191 4-26 (172)
363 1kao_A RAP2A; GTP-binding prot 93.3 0.047 1.6E-06 42.8 3.0 23 169-191 4-26 (167)
364 1nrj_B SR-beta, signal recogni 93.3 0.05 1.7E-06 45.3 3.2 25 167-191 11-35 (218)
365 4tmk_A Protein (thymidylate ki 93.2 0.12 4E-06 43.7 5.5 35 169-203 4-39 (213)
366 1m7b_A RND3/RHOE small GTP-bin 93.2 0.046 1.6E-06 44.3 2.9 24 168-191 7-30 (184)
367 2bbs_A Cystic fibrosis transme 93.2 0.037 1.3E-06 49.2 2.4 24 168-191 64-87 (290)
368 2fn4_A P23, RAS-related protei 93.2 0.068 2.3E-06 42.6 3.9 25 167-191 8-32 (181)
369 2lkc_A Translation initiation 93.1 0.055 1.9E-06 43.1 3.2 25 167-191 7-31 (178)
370 1z47_A CYSA, putative ABC-tran 93.1 0.047 1.6E-06 50.0 3.1 24 168-191 41-64 (355)
371 1m8p_A Sulfate adenylyltransfe 93.1 0.071 2.4E-06 52.0 4.5 26 168-193 396-421 (573)
372 1r8s_A ADP-ribosylation factor 93.1 0.054 1.8E-06 42.6 3.0 22 170-191 2-23 (164)
373 2orw_A Thymidine kinase; TMTK, 93.1 0.074 2.5E-06 43.8 4.0 24 169-192 4-27 (184)
374 2gj8_A MNME, tRNA modification 93.1 0.046 1.6E-06 44.0 2.6 23 169-191 5-27 (172)
375 3tw8_B RAS-related protein RAB 93.1 0.055 1.9E-06 43.1 3.1 26 166-191 7-32 (181)
376 3def_A T7I23.11 protein; chlor 93.1 0.1 3.4E-06 45.3 5.0 26 166-191 34-59 (262)
377 3d31_A Sulfate/molybdate ABC t 93.1 0.046 1.6E-06 49.9 2.9 24 168-191 26-49 (348)
378 3zq6_A Putative arsenical pump 93.0 0.13 4.3E-06 46.3 5.8 27 168-194 14-40 (324)
379 1z0f_A RAB14, member RAS oncog 93.0 0.051 1.7E-06 43.3 2.9 24 168-191 15-38 (179)
380 3q72_A GTP-binding protein RAD 93.0 0.046 1.6E-06 43.1 2.6 21 170-190 4-24 (166)
381 1svi_A GTP-binding protein YSX 93.0 0.05 1.7E-06 44.2 2.8 25 167-191 22-46 (195)
382 1ky3_A GTP-binding protein YPT 93.0 0.068 2.3E-06 42.6 3.6 25 167-191 7-31 (182)
383 3rlf_A Maltose/maltodextrin im 93.0 0.05 1.7E-06 50.3 3.1 24 168-191 29-52 (381)
384 2hxs_A RAB-26, RAS-related pro 93.0 0.055 1.9E-06 43.2 3.0 24 168-191 6-29 (178)
385 3q85_A GTP-binding protein REM 93.0 0.064 2.2E-06 42.4 3.4 22 169-190 3-24 (169)
386 1oxx_K GLCV, glucose, ABC tran 93.0 0.042 1.4E-06 50.3 2.5 24 168-191 31-54 (353)
387 3kkq_A RAS-related protein M-R 93.0 0.052 1.8E-06 43.7 2.9 24 168-191 18-41 (183)
388 2yyz_A Sugar ABC transporter, 93.0 0.051 1.7E-06 49.8 3.1 24 168-191 29-52 (359)
389 1f6b_A SAR1; gtpases, N-termin 93.0 0.084 2.9E-06 43.5 4.2 23 168-190 25-47 (198)
390 1h65_A Chloroplast outer envel 93.0 0.1 3.6E-06 45.4 5.0 26 166-191 37-62 (270)
391 1r2q_A RAS-related protein RAB 93.0 0.056 1.9E-06 42.5 3.0 24 168-191 6-29 (170)
392 1wms_A RAB-9, RAB9, RAS-relate 92.9 0.054 1.8E-06 43.2 2.9 24 168-191 7-30 (177)
393 2it1_A 362AA long hypothetical 92.9 0.052 1.8E-06 49.8 3.1 24 168-191 29-52 (362)
394 2gza_A Type IV secretion syste 92.9 0.077 2.6E-06 48.6 4.2 90 168-264 175-270 (361)
395 3fkq_A NTRC-like two-domain pr 92.9 0.086 2.9E-06 48.4 4.5 38 166-203 141-179 (373)
396 1q57_A DNA primase/helicase; d 92.9 0.17 5.7E-06 48.4 6.7 51 168-225 242-293 (503)
397 1g29_1 MALK, maltose transport 92.9 0.053 1.8E-06 50.0 3.1 24 168-191 29-52 (372)
398 2zts_A Putative uncharacterize 92.9 0.11 3.6E-06 44.1 4.8 36 168-203 30-66 (251)
399 2gks_A Bifunctional SAT/APS ki 92.9 0.11 3.7E-06 50.4 5.3 26 168-193 372-397 (546)
400 3c5c_A RAS-like protein 12; GD 92.9 0.055 1.9E-06 44.1 2.9 24 168-191 21-44 (187)
401 2iwr_A Centaurin gamma 1; ANK 92.8 0.053 1.8E-06 43.4 2.7 24 168-191 7-30 (178)
402 3ihw_A Centg3; RAS, centaurin, 92.8 0.057 2E-06 43.9 2.9 24 168-191 20-43 (184)
403 2a9k_A RAS-related protein RAL 92.8 0.057 1.9E-06 43.3 2.9 24 168-191 18-41 (187)
404 1v43_A Sugar-binding transport 92.8 0.055 1.9E-06 49.8 3.1 24 168-191 37-60 (372)
405 4dsu_A GTPase KRAS, isoform 2B 92.8 0.057 2E-06 43.5 2.9 23 169-191 5-27 (189)
406 1x6v_B Bifunctional 3'-phospho 92.8 0.062 2.1E-06 52.9 3.5 26 167-192 51-76 (630)
407 3lda_A DNA repair protein RAD5 92.8 0.057 2E-06 50.2 3.1 49 155-203 165-219 (400)
408 3cwq_A Para family chromosome 92.8 0.1 3.5E-06 43.7 4.5 33 170-203 2-35 (209)
409 2bme_A RAB4A, RAS-related prot 92.7 0.058 2E-06 43.4 2.8 24 168-191 10-33 (186)
410 1g16_A RAS-related protein SEC 92.7 0.078 2.7E-06 41.8 3.5 24 168-191 3-26 (170)
411 3bc1_A RAS-related protein RAB 92.7 0.063 2.2E-06 43.3 3.0 24 168-191 11-34 (195)
412 1upt_A ARL1, ADP-ribosylation 92.7 0.065 2.2E-06 42.4 3.0 24 168-191 7-30 (171)
413 3bwd_D RAC-like GTP-binding pr 92.7 0.062 2.1E-06 43.0 2.9 24 168-191 8-31 (182)
414 1m2o_B GTP-binding protein SAR 92.7 0.061 2.1E-06 44.0 2.9 24 168-191 23-46 (190)
415 1vg8_A RAS-related protein RAB 92.7 0.08 2.7E-06 43.5 3.6 25 167-191 7-31 (207)
416 3io3_A DEHA2D07832P; chaperone 92.6 0.15 5E-06 46.5 5.6 27 167-193 17-43 (348)
417 3ez2_A Plasmid partition prote 92.6 0.12 4.1E-06 47.7 5.2 28 166-193 106-134 (398)
418 1mh1_A RAC1; GTP-binding, GTPa 92.6 0.065 2.2E-06 43.0 3.0 24 168-191 5-28 (186)
419 3f9v_A Minichromosome maintena 92.6 0.035 1.2E-06 54.4 1.5 49 144-192 294-351 (595)
420 2efe_B Small GTP-binding prote 92.6 0.062 2.1E-06 43.0 2.8 24 168-191 12-35 (181)
421 3ch4_B Pmkase, phosphomevalona 92.6 0.075 2.6E-06 44.6 3.3 26 167-192 10-35 (202)
422 3pqc_A Probable GTP-binding pr 92.6 0.056 1.9E-06 43.7 2.6 24 168-191 23-46 (195)
423 2cxx_A Probable GTP-binding pr 92.6 0.055 1.9E-06 43.7 2.5 22 170-191 3-24 (190)
424 2oil_A CATX-8, RAS-related pro 92.6 0.066 2.2E-06 43.6 3.0 24 168-191 25-48 (193)
425 2atv_A RERG, RAS-like estrogen 92.6 0.064 2.2E-06 43.9 2.9 24 168-191 28-51 (196)
426 3t5g_A GTP-binding protein RHE 92.5 0.063 2.2E-06 43.0 2.8 24 168-191 6-29 (181)
427 1p9r_A General secretion pathw 92.5 0.12 4.3E-06 48.2 5.1 29 167-195 166-194 (418)
428 2bov_A RAla, RAS-related prote 92.5 0.066 2.3E-06 43.9 2.9 24 168-191 14-37 (206)
429 3clv_A RAB5 protein, putative; 92.5 0.067 2.3E-06 43.4 2.9 24 168-191 7-30 (208)
430 3ug7_A Arsenical pump-driving 92.5 0.21 7.3E-06 45.3 6.5 29 166-194 24-52 (349)
431 2y8e_A RAB-protein 6, GH09086P 92.5 0.066 2.3E-06 42.6 2.8 23 169-191 15-37 (179)
432 2yv5_A YJEQ protein; hydrolase 92.4 0.093 3.2E-06 46.8 4.0 33 154-192 156-188 (302)
433 1pui_A ENGB, probable GTP-bind 92.4 0.037 1.3E-06 45.8 1.2 24 167-190 25-48 (210)
434 2qnr_A Septin-2, protein NEDD5 92.4 0.057 1.9E-06 48.1 2.5 21 170-190 20-40 (301)
435 3gd7_A Fusion complex of cysti 92.4 0.065 2.2E-06 49.7 3.0 24 168-191 47-70 (390)
436 3dz8_A RAS-related protein RAB 92.4 0.071 2.4E-06 43.4 3.0 24 168-191 23-46 (191)
437 2www_A Methylmalonic aciduria 92.4 0.085 2.9E-06 48.1 3.7 25 167-191 73-97 (349)
438 3cbq_A GTP-binding protein REM 92.4 0.053 1.8E-06 44.7 2.1 23 167-189 22-44 (195)
439 2g6b_A RAS-related protein RAB 92.4 0.074 2.5E-06 42.5 3.0 24 168-191 10-33 (180)
440 2fg5_A RAB-22B, RAS-related pr 92.3 0.069 2.4E-06 43.6 2.7 24 168-191 23-46 (192)
441 3llu_A RAS-related GTP-binding 92.3 0.06 2.1E-06 44.1 2.4 24 168-191 20-43 (196)
442 3iqw_A Tail-anchored protein t 92.3 0.18 6.1E-06 45.7 5.7 28 167-194 15-42 (334)
443 3oes_A GTPase rhebl1; small GT 92.3 0.073 2.5E-06 43.7 2.9 24 168-191 24-47 (201)
444 1byi_A Dethiobiotin synthase; 92.3 0.08 2.7E-06 44.4 3.2 26 169-194 2-28 (224)
445 2obl_A ESCN; ATPase, hydrolase 92.3 0.074 2.5E-06 48.5 3.1 27 168-194 71-97 (347)
446 4gzl_A RAS-related C3 botulinu 92.2 0.089 3E-06 43.5 3.4 24 168-191 30-53 (204)
447 1jwy_B Dynamin A GTPase domain 92.2 0.081 2.8E-06 46.9 3.3 25 167-191 23-47 (315)
448 2gf0_A GTP-binding protein DI- 92.1 0.078 2.7E-06 43.2 2.9 24 168-191 8-31 (199)
449 2fh5_B SR-beta, signal recogni 92.1 0.079 2.7E-06 43.9 3.0 24 168-191 7-30 (214)
450 3tkl_A RAS-related protein RAB 92.1 0.096 3.3E-06 42.5 3.4 24 168-191 16-39 (196)
451 4dkx_A RAS-related protein RAB 92.1 0.35 1.2E-05 40.7 7.0 22 170-191 15-36 (216)
452 3lxx_A GTPase IMAP family memb 92.1 0.092 3.1E-06 44.7 3.4 25 167-191 28-52 (239)
453 1zd9_A ADP-ribosylation factor 92.1 0.082 2.8E-06 42.9 3.0 24 168-191 22-45 (188)
454 3reg_A RHO-like small GTPase; 92.1 0.082 2.8E-06 43.1 3.0 24 168-191 23-46 (194)
455 2gf9_A RAS-related protein RAB 92.1 0.08 2.7E-06 42.9 2.9 24 168-191 22-45 (189)
456 1zbd_A Rabphilin-3A; G protein 92.1 0.076 2.6E-06 43.6 2.7 24 168-191 8-31 (203)
457 1x3s_A RAS-related protein RAB 92.1 0.08 2.7E-06 42.9 2.9 24 168-191 15-38 (195)
458 2ew1_A RAS-related protein RAB 92.1 0.08 2.7E-06 43.9 2.9 24 168-191 26-49 (201)
459 2pt7_A CAG-ALFA; ATPase, prote 92.0 0.093 3.2E-06 47.4 3.5 86 169-264 172-258 (330)
460 1gwn_A RHO-related GTP-binding 92.0 0.11 3.6E-06 43.2 3.6 24 168-191 28-51 (205)
461 2p5s_A RAS and EF-hand domain 92.0 0.08 2.7E-06 43.4 2.8 25 167-191 27-51 (199)
462 2a5j_A RAS-related protein RAB 92.0 0.085 2.9E-06 42.9 3.0 24 168-191 21-44 (191)
463 3tqf_A HPR(Ser) kinase; transf 92.0 0.11 3.6E-06 42.7 3.4 23 169-191 17-39 (181)
464 2q3h_A RAS homolog gene family 92.0 0.075 2.6E-06 43.5 2.6 24 168-191 20-43 (201)
465 3cmw_A Protein RECA, recombina 91.9 0.22 7.6E-06 54.3 6.7 54 150-203 713-767 (1706)
466 1z06_A RAS-related protein RAB 91.9 0.091 3.1E-06 42.6 3.0 24 168-191 20-43 (189)
467 1moz_A ARL1, ADP-ribosylation 91.8 0.13 4.4E-06 41.2 3.8 24 167-190 17-40 (183)
468 1ega_A Protein (GTP-binding pr 91.8 0.091 3.1E-06 46.8 3.1 24 168-191 8-31 (301)
469 2b8t_A Thymidine kinase; deoxy 91.8 0.16 5.6E-06 43.2 4.6 28 168-195 12-39 (223)
470 3q9l_A Septum site-determining 91.8 0.16 5.4E-06 43.5 4.6 26 169-194 3-29 (260)
471 2npi_A Protein CLP1; CLP1-PCF1 91.8 0.072 2.5E-06 50.5 2.5 24 168-191 138-161 (460)
472 3upu_A ATP-dependent DNA helic 91.8 0.2 7E-06 47.2 5.7 27 169-195 46-72 (459)
473 1yqt_A RNAse L inhibitor; ATP- 91.8 0.085 2.9E-06 51.0 3.1 24 169-192 313-336 (538)
474 2cjw_A GTP-binding protein GEM 91.7 0.095 3.2E-06 43.0 3.0 23 168-190 6-28 (192)
475 2o52_A RAS-related protein RAB 91.7 0.079 2.7E-06 43.6 2.5 24 168-191 25-48 (200)
476 2atx_A Small GTP binding prote 91.7 0.089 3.1E-06 42.8 2.8 24 168-191 18-41 (194)
477 3k53_A Ferrous iron transport 91.7 0.096 3.3E-06 45.6 3.1 24 168-191 3-26 (271)
478 1dek_A Deoxynucleoside monopho 91.7 0.11 3.9E-06 44.7 3.5 23 169-191 2-24 (241)
479 4bas_A ADP-ribosylation factor 91.6 0.1 3.6E-06 42.4 3.1 25 167-191 16-40 (199)
480 1zj6_A ADP-ribosylation factor 91.6 0.09 3.1E-06 42.5 2.7 26 166-191 14-39 (187)
481 2h17_A ADP-ribosylation factor 91.6 0.084 2.9E-06 42.5 2.5 24 168-191 21-44 (181)
482 1g3q_A MIND ATPase, cell divis 91.6 0.18 6E-06 42.6 4.6 35 169-203 3-38 (237)
483 2fv8_A H6, RHO-related GTP-bin 91.6 0.096 3.3E-06 43.3 2.9 24 168-191 25-48 (207)
484 2qu8_A Putative nucleolar GTP- 91.6 0.1 3.5E-06 43.9 3.1 25 167-191 28-52 (228)
485 3ozx_A RNAse L inhibitor; ATP 91.5 0.078 2.7E-06 51.3 2.5 23 169-191 295-317 (538)
486 3cmu_A Protein RECA, recombina 91.5 0.35 1.2E-05 53.5 7.8 57 147-203 361-418 (2050)
487 3tmk_A Thymidylate kinase; pho 91.5 0.11 3.8E-06 44.0 3.2 27 168-194 5-31 (216)
488 1f2t_A RAD50 ABC-ATPase; DNA d 91.5 0.12 4.3E-06 40.8 3.3 24 168-191 23-46 (149)
489 2bcg_Y Protein YP2, GTP-bindin 91.5 0.1 3.4E-06 43.0 2.9 24 168-191 8-31 (206)
490 2qag_B Septin-6, protein NEDD5 91.5 0.089 3E-06 49.3 2.8 24 168-191 42-65 (427)
491 2j0v_A RAC-like GTP-binding pr 91.5 0.1 3.5E-06 43.2 2.9 24 168-191 9-32 (212)
492 1wcv_1 SOJ, segregation protei 91.5 0.14 4.8E-06 44.1 3.9 28 167-194 5-33 (257)
493 2j1l_A RHO-related GTP-binding 91.4 0.087 3E-06 43.9 2.5 24 168-191 34-57 (214)
494 3k9g_A PF-32 protein; ssgcid, 91.4 0.2 6.9E-06 43.2 4.9 28 166-193 25-53 (267)
495 2x77_A ADP-ribosylation factor 91.4 0.13 4.4E-06 41.6 3.4 24 167-190 21-44 (189)
496 3cph_A RAS-related protein SEC 91.4 0.11 3.6E-06 42.9 3.0 24 168-191 20-43 (213)
497 4i1u_A Dephospho-COA kinase; s 91.4 0.11 3.9E-06 43.7 3.2 23 168-190 9-31 (210)
498 2b6h_A ADP-ribosylation factor 91.4 0.093 3.2E-06 42.9 2.6 23 168-190 29-51 (192)
499 1yqt_A RNAse L inhibitor; ATP- 91.4 0.098 3.3E-06 50.6 3.1 24 168-191 47-70 (538)
500 2gco_A H9, RHO-related GTP-bin 91.4 0.1 3.6E-06 42.8 2.9 24 168-191 25-48 (201)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=9e-41 Score=282.83 Aligned_cols=130 Identities=40% Similarity=0.721 Sum_probs=113.9
Q ss_pred CCCCCCCCCCCCCcccEEecCccccCCCChHHHHHHHHHhCCCcEEeeC-CCCCCCcchHHHHHHHHhccceeeeeccCc
Q 042778 5 SSSPSSPSSPRNHKYDVFQSFRGEDNRDNFTGHLYSALSQKGIETFIDD-QLNRGDEISQSLVDAIEASAISLIIFSEAY 83 (311)
Q Consensus 5 ~~~~~~s~~~~~~~~dvFis~~g~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~G~~~~~~i~~ai~~s~~~i~v~S~~y 83 (311)
|+|+++|++.+.++|||||||||+|+|++|++||+.+|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||+||
T Consensus 22 ~~s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nY 101 (204)
T 3ozi_A 22 SDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGY 101 (204)
T ss_dssp ------------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTG
T ss_pred ccCCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEccc
Confidence 3455666677789999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHhhH--------------------------hHHHHhHhH-----HHHHHHHHHHHHHhhhcCCccCC
Q 042778 84 ASSRWCLDELVKILTRE--------------------------LEEMFKENS-----EKLQTWRNALKEAAGLSGFHSQN 132 (311)
Q Consensus 84 ~~S~wcl~El~~i~e~~--------------------------~~~~~~~~~-----~~v~~w~~~l~~~~~~~g~~~~~ 132 (311)
++|.|||+||++|++|. ||++|.+|+ +++++||.||+++++++||++.+
T Consensus 102 a~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~ 181 (204)
T 3ozi_A 102 ADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGK 181 (204)
T ss_dssp GGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECT
T ss_pred ccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCC
Confidence 99999999999999985 999999988 68999999999999999999887
Q ss_pred CC
Q 042778 133 IR 134 (311)
Q Consensus 133 ~~ 134 (311)
..
T Consensus 182 ~~ 183 (204)
T 3ozi_A 182 ND 183 (204)
T ss_dssp TS
T ss_pred CC
Confidence 64
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.7e-38 Score=264.60 Aligned_cols=119 Identities=49% Similarity=0.787 Sum_probs=97.8
Q ss_pred CCCCCcccEEecCccccCCCChHHHHHHHHHhCCCcEEeeC-CCCCCCcchHHHHHHHHhccceeeeeccCcccccchHH
Q 042778 13 SPRNHKYDVFQSFRGEDNRDNFTGHLYSALSQKGIETFIDD-QLNRGDEISQSLVDAIEASAISLIIFSEAYASSRWCLD 91 (311)
Q Consensus 13 ~~~~~~~dvFis~~g~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wcl~ 91 (311)
++.+++|||||||||+|+|++|++||+.+|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||+||++|.||++
T Consensus 3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~ 82 (176)
T 3jrn_A 3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD 82 (176)
T ss_dssp ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence 34568999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHhhH-------------------------hHHHHhHhH-----HHHHHHHHHHHHHhhhcCCccC
Q 042778 92 ELVKILTRE-------------------------LEEMFKENS-----EKLQTWRNALKEAAGLSGFHSQ 131 (311)
Q Consensus 92 El~~i~e~~-------------------------~~~~~~~~~-----~~v~~w~~~l~~~~~~~g~~~~ 131 (311)
||++|++|. ||++|.+|+ +++++||.||+++++++||++.
T Consensus 83 EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 83 ELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp HHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred HHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC
Confidence 999999996 999999998 7899999999999999999874
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.92 E-value=2.7e-24 Score=211.08 Aligned_cols=155 Identities=20% Similarity=0.195 Sum_probs=123.1
Q ss_pred cchhhhHHHHHHhhccc-CCCeEEEEEeccCcchhHHHHHHHHH----hhccCcCceEEEecCccccCCCC--ChHHHHH
Q 042778 148 VGVESRVEEIESLLGAE-SKDVYALGIWGIGGIDRTTIARAIFN----KISSNFEGSCFLQNVREESQRPG--GLGFLQQ 220 (311)
Q Consensus 148 vGr~~~~~~l~~~L~~~-~~~~~vi~I~GmgGiGKTtLA~~v~~----~~~~~F~~~~wv~~~~~~s~~~~--~~~~l~~ 220 (311)
+||+.++++|.++|... ..++++|+|+||||+||||||+.+|+ +++.+|++++|++ +++ .. ++..++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~-~~~~~~~~~~~ 205 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSG-TAPKSTFDLFT 205 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCC-CSTTHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECC-CCCCCHHHHHH
Confidence 69999999999999755 34589999999999999999999997 6899999999997 665 53 7899999
Q ss_pred HHHHHHhcCCC-----CCCC-----H-HHHHHHhCCC-eEEEEEecCCChHHHHHhhccCCC--------------cC-C
Q 042778 221 KLLSKLLQDGI-----VIPD-----I-ALSFRQLSRR-KVLIVLDDVTCFRQIKSLIGMLRN--------------CC-V 273 (311)
Q Consensus 221 ~ll~~l~~~~~-----~~~~-----~-~~l~~~L~~k-r~LlVLDdV~~~~~l~~l~~~~~~--------------~~-~ 273 (311)
.|+.++..... .... + ..+++.|.++ ||||||||||+.+++ .+.+..++ ++ .
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHHHTTCEEEEEESBGGGGGGCCSC
T ss_pred HHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccccCCCEEEEEcCCHHHHHHcCCC
Confidence 99999986521 1211 2 7889999996 999999999999876 33222222 22 3
Q ss_pred ceEEEcCCCChHHHHHHHHHhhcCCCCCCCcHHHhh
Q 042778 274 KEKYEMKELGDDHALELFSRHAFKQNNPHIGFEELS 309 (311)
Q Consensus 274 ~~~y~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~ 309 (311)
..+|+|++|+.+|||+||+++||.... ++++++++
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~ 319 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVL 319 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHH
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHH
Confidence 468999999999999999999998643 35666554
No 4
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.91 E-value=6.4e-26 Score=186.69 Aligned_cols=86 Identities=24% Similarity=0.426 Sum_probs=79.4
Q ss_pred CCCCCcccEEecCccccCCCChHHHHHHHHHhCCCcEEeeC-CCCCCCcchHHHHHHHHhccceeeeeccCcccccchHH
Q 042778 13 SPRNHKYDVFQSFRGEDNRDNFTGHLYSALSQKGIETFIDD-QLNRGDEISQSLVDAIEASAISLIIFSEAYASSRWCLD 91 (311)
Q Consensus 13 ~~~~~~~dvFis~~g~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wcl~ 91 (311)
..+.++|||||||+++| +..|++||+.+|+++|+++|+|+ ++.+|+.|.++|.++|++|+++|+|+||||++|.||++
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 56789999999999999 56799999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 042778 92 ELVKILTR 99 (311)
Q Consensus 92 El~~i~e~ 99 (311)
||.++++|
T Consensus 94 El~~~~~~ 101 (154)
T 3h16_A 94 ELDGLFQL 101 (154)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHHH
Confidence 99888764
No 5
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.86 E-value=1.4e-23 Score=170.77 Aligned_cols=86 Identities=22% Similarity=0.388 Sum_probs=66.0
Q ss_pred CCCCCcccEEecCccccCCCChHHHHHHHHHh--CCCcEEeeC-CCCCCCcchHHHHHHHHhccceeeeeccCcccccch
Q 042778 13 SPRNHKYDVFQSFRGEDNRDNFTGHLYSALSQ--KGIETFIDD-QLNRGDEISQSLVDAIEASAISLIIFSEAYASSRWC 89 (311)
Q Consensus 13 ~~~~~~~dvFis~~g~D~~~~f~~~L~~~L~~--~gi~~f~d~-~~~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc 89 (311)
....+.|||||||+++|+ .|+.||+.+|++ +|+++|+++ ++.+|+.+.++|.+||++|+++|+||||||++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 455679999999999997 489999999998 699999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhH
Q 042778 90 LDELVKILTRE 100 (311)
Q Consensus 90 l~El~~i~e~~ 100 (311)
+.||..++.+.
T Consensus 83 ~~El~~al~~~ 93 (146)
T 3ub2_A 83 KYQMLQALTEA 93 (146)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHHH
Confidence 99999998763
No 6
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.82 E-value=1.3e-21 Score=159.81 Aligned_cols=82 Identities=24% Similarity=0.397 Sum_probs=76.5
Q ss_pred CCCcccEEecCccccCCCChHHH-HHHHHHhC--CCcEEeeC-CCCCCCcchHHHHHHHHhccceeeeeccCcccccchH
Q 042778 15 RNHKYDVFQSFRGEDNRDNFTGH-LYSALSQK--GIETFIDD-QLNRGDEISQSLVDAIEASAISLIIFSEAYASSRWCL 90 (311)
Q Consensus 15 ~~~~~dvFis~~g~D~~~~f~~~-L~~~L~~~--gi~~f~d~-~~~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wcl 90 (311)
.++.|||||||+++|+ .|+.+ |+.+|+++ |+++|+|+ ++.+|+.+.++|.++|++|+++|+|+||||++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3578999999999997 69997 99999987 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 042778 91 DELVKILT 98 (311)
Q Consensus 91 ~El~~i~e 98 (311)
.||..++.
T Consensus 80 ~El~~a~~ 87 (149)
T 1fyx_A 80 YELDFSHF 87 (149)
T ss_dssp HHSCCSCC
T ss_pred HHHHHHHH
Confidence 99977653
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.81 E-value=4.1e-21 Score=161.14 Aligned_cols=85 Identities=24% Similarity=0.420 Sum_probs=77.7
Q ss_pred CCCCCCcccEEecCccccCCCChHHH-HHHHHHh--CCCcEEeeC-CCCCCCcchHHHHHHHHhccceeeeeccCccccc
Q 042778 12 SSPRNHKYDVFQSFRGEDNRDNFTGH-LYSALSQ--KGIETFIDD-QLNRGDEISQSLVDAIEASAISLIIFSEAYASSR 87 (311)
Q Consensus 12 ~~~~~~~~dvFis~~g~D~~~~f~~~-L~~~L~~--~gi~~f~d~-~~~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~ 87 (311)
....++.|||||||+++|+ +|+.+ |+.+|++ +|+++|+|+ ++.+|+.+.++|.++|++|+++|+|+||||++|.
T Consensus 29 ~~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~ 106 (178)
T 2j67_A 29 QLKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNE 106 (178)
T ss_dssp -CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHT
T ss_pred ccCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccc
Confidence 3556789999999999996 79985 9999998 899999999 9999999999999999999999999999999999
Q ss_pred chHHHHHHHHh
Q 042778 88 WCLDELVKILT 98 (311)
Q Consensus 88 wcl~El~~i~e 98 (311)
||+.||..++.
T Consensus 107 wc~~El~~a~~ 117 (178)
T 2j67_A 107 WCHYEFYFAHH 117 (178)
T ss_dssp GGGTHHHHTTC
T ss_pred hHHHHHHHHHH
Confidence 99999987764
No 8
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.81 E-value=5.7e-21 Score=157.76 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=77.7
Q ss_pred CCCCCcccEEecCccccCCCChHHHHHHHHHhC--CCcEEeeC-CCCCCCcchHHHHHHHH-hccceeeeeccCcccccc
Q 042778 13 SPRNHKYDVFQSFRGEDNRDNFTGHLYSALSQK--GIETFIDD-QLNRGDEISQSLVDAIE-ASAISLIIFSEAYASSRW 88 (311)
Q Consensus 13 ~~~~~~~dvFis~~g~D~~~~f~~~L~~~L~~~--gi~~f~d~-~~~~G~~~~~~i~~ai~-~s~~~i~v~S~~y~~S~w 88 (311)
.+.++.|||||||+++|. +|+.+|+.+|+++ |+++|+|+ ++.+|+.+.++|.++|+ +|+++|+|+||||++|.|
T Consensus 11 ~~~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 344678999999999994 7999999999985 69999998 99999999999999999 799999999999999999
Q ss_pred hHHHHHHHHhh
Q 042778 89 CLDELVKILTR 99 (311)
Q Consensus 89 cl~El~~i~e~ 99 (311)
|+.||..++++
T Consensus 89 c~~El~~a~~~ 99 (160)
T 2js7_A 89 CDFQTKFALSL 99 (160)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887753
No 9
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.80 E-value=2.6e-19 Score=189.44 Aligned_cols=150 Identities=20% Similarity=0.219 Sum_probs=112.8
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHh---hccCcC-ceEEEecCccccCCCC--ChHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNK---ISSNFE-GSCFLQNVREESQRPG--GLGF 217 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~---~~~~F~-~~~wv~~~~~~s~~~~--~~~~ 217 (311)
+..||||+.++++|.++|....+++++|+|+||||+||||||+++|++ ...+|. .++|+. +++ .. ++..
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~----~~~-~~~~~~~~ 197 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS----IGK-QDKSGLLM 197 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE----CCS-CCHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE----ECC-cCchHHHH
Confidence 567999999999999999766667999999999999999999999997 455565 455777 444 32 2344
Q ss_pred HHHHHHHHHhcCCC----CCCCH----HHHHHHhCCC--eEEEEEecCCChHHHHHhhccCCC-------------cCCc
Q 042778 218 LQQKLLSKLLQDGI----VIPDI----ALSFRQLSRR--KVLIVLDDVTCFRQIKSLIGMLRN-------------CCVK 274 (311)
Q Consensus 218 l~~~ll~~l~~~~~----~~~~~----~~l~~~L~~k--r~LlVLDdV~~~~~l~~l~~~~~~-------------~~~~ 274 (311)
.+..++..+..... ...+. ..++..|.++ |+||||||||+.++|+.+.+...- .+..
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~ 277 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPK 277 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCB
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCc
Confidence 45566666655432 11222 6677777766 999999999999999987432211 3456
Q ss_pred eEEEcCC-CChHHHHHHHHHhhcCC
Q 042778 275 EKYEMKE-LGDDHALELFSRHAFKQ 298 (311)
Q Consensus 275 ~~y~v~~-L~~~ea~~Lf~~~af~~ 298 (311)
..|++++ |+.+||++||+++++..
T Consensus 278 ~~~~~~~~l~~~~a~~l~~~~~~~~ 302 (1249)
T 3sfz_A 278 HVVPVESGLGREKGLEILSLFVNMK 302 (1249)
T ss_dssp CCEECCSSCCHHHHHHHHHHHHTSC
T ss_pred eEEEecCCCCHHHHHHHHHHhhCCC
Confidence 7899996 99999999999999654
No 10
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.80 E-value=1.5e-20 Score=155.11 Aligned_cols=82 Identities=22% Similarity=0.416 Sum_probs=73.9
Q ss_pred CcccEEecCccccC---------CCChHHHHHH-HHH-hCCCcEEeeC-CCCCCCcchHHHHHHHHhccceeeeeccCcc
Q 042778 17 HKYDVFQSFRGEDN---------RDNFTGHLYS-ALS-QKGIETFIDD-QLNRGDEISQSLVDAIEASAISLIIFSEAYA 84 (311)
Q Consensus 17 ~~~dvFis~~g~D~---------~~~f~~~L~~-~L~-~~gi~~f~d~-~~~~G~~~~~~i~~ai~~s~~~i~v~S~~y~ 84 (311)
+.|||||||+++|+ +.+|+.+|.. .|+ ++|+++|+|+ |+.+|+.+.++|.++|++|+++|+|+||||+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 46999999999997 3579999665 699 7999999998 9999999999999999999999999999997
Q ss_pred -cccchHHHHHHHHh
Q 042778 85 -SSRWCLDELVKILT 98 (311)
Q Consensus 85 -~S~wcl~El~~i~e 98 (311)
.|.||+.|+..++.
T Consensus 81 ~~S~wc~~El~~a~~ 95 (159)
T 1t3g_A 81 VRRGWSIFELETRLR 95 (159)
T ss_dssp HTTTTHHHHHSHHHH
T ss_pred hcChHHHHHHHHHHH
Confidence 99999999987765
No 11
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.78 E-value=4.7e-19 Score=180.90 Aligned_cols=145 Identities=15% Similarity=0.056 Sum_probs=109.7
Q ss_pred CccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHh--hccCcCc-eEEEecCccccCCCCChHHHHHHH
Q 042778 146 QLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNK--ISSNFEG-SCFLQNVREESQRPGGLGFLQQKL 222 (311)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~--~~~~F~~-~~wv~~~~~~s~~~~~~~~l~~~l 222 (311)
..|||+..+++|.++|... +++++|+|+||||+||||||+.+|++ ++.+|+. ++|++ +++ .++...++..|
T Consensus 129 ~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~-~~d~~~IL~~L 202 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKN-CNSPETVLEML 202 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCC-SSSHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCC-CCCHHHHHHHH
Confidence 3599999999999999743 34899999999999999999999974 7889997 78888 666 77787877777
Q ss_pred HHHHhcCC---C-CCC---C-------H-HHHHHHh---CCCeEEEEEecCCChHHHHHhhccCCC------------cC
Q 042778 223 LSKLLQDG---I-VIP---D-------I-ALSFRQL---SRRKVLIVLDDVTCFRQIKSLIGMLRN------------CC 272 (311)
Q Consensus 223 l~~l~~~~---~-~~~---~-------~-~~l~~~L---~~kr~LlVLDdV~~~~~l~~l~~~~~~------------~~ 272 (311)
+..+.... . ... + + ..+++.| .++|+||||||||+.++|+.+.+.... +.
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHH
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcC
Confidence 66543211 1 111 1 1 4566655 689999999999999999988532211 12
Q ss_pred CceEEEcC------CCChHHHHHHHHHhhcC
Q 042778 273 VKEKYEMK------ELGDDHALELFSRHAFK 297 (311)
Q Consensus 273 ~~~~y~v~------~L~~~ea~~Lf~~~af~ 297 (311)
...+|+|+ +|+.+||++||+++ |.
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g 312 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKY-LD 312 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHH-HC
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHH-cC
Confidence 22367777 99999999999998 44
No 12
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=164.69 Aligned_cols=148 Identities=21% Similarity=0.219 Sum_probs=106.4
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh---ccCcC-ceEEEecCccccCCCCChHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI---SSNFE-GSCFLQNVREESQRPGGLGFLQ 219 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~---~~~F~-~~~wv~~~~~~s~~~~~~~~l~ 219 (311)
+..+|||+.++.+|.++|....++.++|+|+||||+||||||+.+|++. ..+|+ +++|+. ++. . +...+.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~----~~~-~-~~~~~~ 196 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS----VGK-Q-DKSGLL 196 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE----EES-C-CHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE----CCC-C-chHHHH
Confidence 6789999999999999998655568999999999999999999999864 77895 688887 444 3 233333
Q ss_pred HHH---HHHHhcCCC----CCCCH----HHHHHHhCC--CeEEEEEecCCChHHHHHhhccCCC-----------cCCce
Q 042778 220 QKL---LSKLLQDGI----VIPDI----ALSFRQLSR--RKVLIVLDDVTCFRQIKSLIGMLRN-----------CCVKE 275 (311)
Q Consensus 220 ~~l---l~~l~~~~~----~~~~~----~~l~~~L~~--kr~LlVLDdV~~~~~l~~l~~~~~~-----------~~~~~ 275 (311)
..+ +..+..... ...+. ..++..|.+ +++||||||||+..+++.+.+.... .....
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~~ 276 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGP 276 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCSC
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCCC
Confidence 333 333332111 22232 556666655 7899999999999998876322111 11245
Q ss_pred EEEc---CCCChHHHHHHHHHhhcC
Q 042778 276 KYEM---KELGDDHALELFSRHAFK 297 (311)
Q Consensus 276 ~y~v---~~L~~~ea~~Lf~~~af~ 297 (311)
.|++ ++|+.+||++||+..++.
T Consensus 277 ~~~v~~l~~L~~~ea~~L~~~~~~~ 301 (591)
T 1z6t_A 277 KYVVPVESSLGKEKGLEILSLFVNM 301 (591)
T ss_dssp EEEEECCSSCCHHHHHHHHHHHHTS
T ss_pred ceEeecCCCCCHHHHHHHHHHHhCC
Confidence 6666 489999999999999986
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.42 E-value=9.3e-14 Score=142.54 Aligned_cols=83 Identities=20% Similarity=0.396 Sum_probs=75.5
Q ss_pred CCCCcccEEecCccccCCCChH-HHHHHHHHh-----CCCcEEeeC-CCCCCCcchHHHHHHHHhccceeeeeccCcccc
Q 042778 14 PRNHKYDVFQSFRGEDNRDNFT-GHLYSALSQ-----KGIETFIDD-QLNRGDEISQSLVDAIEASAISLIIFSEAYASS 86 (311)
Q Consensus 14 ~~~~~~dvFis~~g~D~~~~f~-~~L~~~L~~-----~gi~~f~d~-~~~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S 86 (311)
...+.|||||||+++|. .|+ .+|...|++ +|+++++++ |+.+|+.+.++|.++|++||.+|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 45689999999999996 588 779999984 689999999 999999999999999999999999999999999
Q ss_pred cchHHHHHHHHh
Q 042778 87 RWCLDELVKILT 98 (311)
Q Consensus 87 ~wcl~El~~i~e 98 (311)
.||..|+..++.
T Consensus 744 ~wc~~e~~~a~~ 755 (844)
T 3j0a_A 744 GWCLEAFSYAQG 755 (844)
T ss_dssp TSTTHHHHHHHS
T ss_pred hHHHHHHHHHHH
Confidence 999999876543
No 14
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.19 E-value=3.2e-10 Score=105.24 Aligned_cols=147 Identities=14% Similarity=0.158 Sum_probs=102.2
Q ss_pred CCCccchhhhHHHHHHhhcc--cCCCeEEEEEeccCcchhHHHHHHHHHhhccC------c--CceEEEecCccccCCCC
Q 042778 144 KNQLVGVESRVEEIESLLGA--ESKDVYALGIWGIGGIDRTTIARAIFNKISSN------F--EGSCFLQNVREESQRPG 213 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~------F--~~~~wv~~~~~~s~~~~ 213 (311)
+..++||+..++++..+|.. .....+.+.|+|++|+||||||+.+++..... + ...+|+. ... ..
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~-~~ 93 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CRE-VG 93 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHH-HC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----Ccc-CC
Confidence 67899999999999988864 23346789999999999999999999986433 2 2335554 222 33
Q ss_pred -ChHHHHHHHHHHHhcCCC---C--CCCH-HHHHHHhCCCeEEEEEecCCChH------H-HHHhhccCCC---------
Q 042778 214 -GLGFLQQKLLSKLLQDGI---V--IPDI-ALSFRQLSRRKVLIVLDDVTCFR------Q-IKSLIGMLRN--------- 270 (311)
Q Consensus 214 -~~~~l~~~ll~~l~~~~~---~--~~~~-~~l~~~L~~kr~LlVLDdV~~~~------~-l~~l~~~~~~--------- 270 (311)
+...+...++..+.+... . .... ..+.+.+..++.+|||||++... . +..+......
T Consensus 94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~ 173 (384)
T 2qby_B 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISND 173 (384)
T ss_dssp SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSS
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECC
Confidence 677788888888754332 1 1122 66777787777799999997643 2 3344322111
Q ss_pred ------------cCCceEEEcCCCChHHHHHHHHHhh
Q 042778 271 ------------CCVKEKYEMKELGDDHALELFSRHA 295 (311)
Q Consensus 271 ------------~~~~~~y~v~~L~~~ea~~Lf~~~a 295 (311)
......+++++++.++..++|..++
T Consensus 174 ~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~ 210 (384)
T 2qby_B 174 INVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYA 210 (384)
T ss_dssp TTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 1112489999999999999999873
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.18 E-value=2.5e-10 Score=106.79 Aligned_cols=146 Identities=12% Similarity=0.142 Sum_probs=97.5
Q ss_pred CCCccchhhhHHHHHHhh-ccc--C--CCeEEEEE--eccCcchhHHHHHHHHHhhccC-----cCc-eEEEecCccccC
Q 042778 144 KNQLVGVESRVEEIESLL-GAE--S--KDVYALGI--WGIGGIDRTTIARAIFNKISSN-----FEG-SCFLQNVREESQ 210 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L-~~~--~--~~~~vi~I--~GmgGiGKTtLA~~v~~~~~~~-----F~~-~~wv~~~~~~s~ 210 (311)
+..++||+.++++|...| ... . ...+.+.| +|++|+||||||+.+++..... +.. .+|+. ...
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 96 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AFN 96 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GGG
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----CCC
Confidence 578999999999999988 421 1 23445555 9999999999999999986542 222 35665 334
Q ss_pred CCCChHHHHHHHHHHHhcCCCC-CCCH----HHHHHHhC--CCeEEEEEecCCCh--------HHHHHhh----ccC--C
Q 042778 211 RPGGLGFLQQKLLSKLLQDGIV-IPDI----ALSFRQLS--RRKVLIVLDDVTCF--------RQIKSLI----GML--R 269 (311)
Q Consensus 211 ~~~~~~~l~~~ll~~l~~~~~~-~~~~----~~l~~~L~--~kr~LlVLDdV~~~--------~~l~~l~----~~~--~ 269 (311)
..+...+...++..+...... ..+. ..+.+.|. +++++|||||++.. +.+..+. ... +
T Consensus 97 -~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 97 -APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp -CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred -CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 567788888988888654321 1112 55555554 67999999999763 3333321 111 1
Q ss_pred --C-------c------------------CCceEEEcCCCChHHHHHHHHHh
Q 042778 270 --N-------C------------------CVKEKYEMKELGDDHALELFSRH 294 (311)
Q Consensus 270 --~-------~------------------~~~~~y~v~~L~~~ea~~Lf~~~ 294 (311)
. . .....+++++|+.++++++|..+
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~ 227 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQR 227 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHH
Confidence 1 0 01233899999999999999754
No 16
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.06 E-value=2.5e-09 Score=98.81 Aligned_cols=147 Identities=10% Similarity=0.151 Sum_probs=99.6
Q ss_pred CCCccchhhhHHHHHHhhccc--CCCeEEEEEeccCcchhHHHHHHHHHhhccCc-----C-ceEEEecCccccCCCCCh
Q 042778 144 KNQLVGVESRVEEIESLLGAE--SKDVYALGIWGIGGIDRTTIARAIFNKISSNF-----E-GSCFLQNVREESQRPGGL 215 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F-----~-~~~wv~~~~~~s~~~~~~ 215 (311)
+..++||+..++++..+|... ....+.+.|+|++|+||||||+.+++.....+ . ..+++. ... ..+.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~-~~~~ 92 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARH-RETP 92 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTT-SCSH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCc-CCCH
Confidence 578999999999999988543 34467899999999999999999999864431 2 234554 333 5567
Q ss_pred HHHHHHHHHHHhcCCCC-CCCH----HHHHHHh--CCCeEEEEEecCCChH----H---HHHhhc-------cCCC----
Q 042778 216 GFLQQKLLSKLLQDGIV-IPDI----ALSFRQL--SRRKVLIVLDDVTCFR----Q---IKSLIG-------MLRN---- 270 (311)
Q Consensus 216 ~~l~~~ll~~l~~~~~~-~~~~----~~l~~~L--~~kr~LlVLDdV~~~~----~---l~~l~~-------~~~~---- 270 (311)
..+...++..+...... ..+. ..+...+ .+++++|||||++... . +..+.. ....
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 77888888887543331 1112 4555565 3468999999998643 1 222221 1111
Q ss_pred ----------------cCCc-eEEEcCCCChHHHHHHHHHhh
Q 042778 271 ----------------CCVK-EKYEMKELGDDHALELFSRHA 295 (311)
Q Consensus 271 ----------------~~~~-~~y~v~~L~~~ea~~Lf~~~a 295 (311)
.... ..+.+++++.++..+++..++
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~ 214 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRA 214 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHH
Confidence 0111 578999999999999999873
No 17
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.01 E-value=7.7e-10 Score=102.19 Aligned_cols=147 Identities=17% Similarity=0.250 Sum_probs=96.1
Q ss_pred CCCccchhhhHHHHHHhhccc--CCCeEEEEEeccCcchhHHHHHHHHHhhccCcC---ceEEEecCccccCCCCChHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAE--SKDVYALGIWGIGGIDRTTIARAIFNKISSNFE---GSCFLQNVREESQRPGGLGFL 218 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~---~~~wv~~~~~~s~~~~~~~~l 218 (311)
+..++||+.+++.+.++|... ....+.+.|+|++|+||||||+.+++.....+. ..+|+. ... ......+
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~-~~~~~~~ 93 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQ-IDTPYRV 93 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHH-HCSHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCC-CCCHHHH
Confidence 678999999999999988742 344678999999999999999999998765542 345554 222 3455566
Q ss_pred HHHHHHHHhcCCC-CCCCH----HHHHHHhC--CCeEEEEEecCCCh------HHHHHhhc------cCCC---------
Q 042778 219 QQKLLSKLLQDGI-VIPDI----ALSFRQLS--RRKVLIVLDDVTCF------RQIKSLIG------MLRN--------- 270 (311)
Q Consensus 219 ~~~ll~~l~~~~~-~~~~~----~~l~~~L~--~kr~LlVLDdV~~~------~~l~~l~~------~~~~--------- 270 (311)
...++..+..... ...+. ..+.+.+. +++.+||||+++.. +.+..+.. ..+.
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 6666655533221 11112 44444543 45899999999653 23333321 1111
Q ss_pred ------------cCCceEEEcCCCChHHHHHHHHHhh
Q 042778 271 ------------CCVKEKYEMKELGDDHALELFSRHA 295 (311)
Q Consensus 271 ------------~~~~~~y~v~~L~~~ea~~Lf~~~a 295 (311)
.-....+.+++|+.++..+++..++
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 0012589999999999999999863
No 18
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.88 E-value=3.6e-08 Score=91.22 Aligned_cols=147 Identities=15% Similarity=0.141 Sum_probs=98.1
Q ss_pred CCCccchhhhHHHHHHhhccc----CCCeEEEEEeccCcchhHHHHHHHHHhhccCc-CceEEEecCccccCCCCChHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAE----SKDVYALGIWGIGGIDRTTIARAIFNKISSNF-EGSCFLQNVREESQRPGGLGFL 218 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F-~~~~wv~~~~~~s~~~~~~~~l 218 (311)
++.++||+..++++...|... ....+.+.|+|.+|+||||||+.+++...... ...+++. .+. ......+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~-~~~~~~~ 90 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFI-YRNFTAI 90 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTT-CCSHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----Ccc-CCCHHHH
Confidence 578999999999999988642 12234899999999999999999999876542 2345554 233 4556777
Q ss_pred HHHHHHHHhcCCCC-CCCH----HHHHHHhC--CCeEEEEEecCCC--hHHHHHhhcc---------CCC------c---
Q 042778 219 QQKLLSKLLQDGIV-IPDI----ALSFRQLS--RRKVLIVLDDVTC--FRQIKSLIGM---------LRN------C--- 271 (311)
Q Consensus 219 ~~~ll~~l~~~~~~-~~~~----~~l~~~L~--~kr~LlVLDdV~~--~~~l~~l~~~---------~~~------~--- 271 (311)
...++..+...... .... ..+...+. +++.+|||||++. .+.+..|... .+. .
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 88887777543221 1122 34444443 5688999999975 3444444211 111 0
Q ss_pred ------------CCceEEEcCCCChHHHHHHHHHhh
Q 042778 272 ------------CVKEKYEMKELGDDHALELFSRHA 295 (311)
Q Consensus 272 ------------~~~~~y~v~~L~~~ea~~Lf~~~a 295 (311)
-....+.+++++.++..+++...+
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~ 206 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA 206 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence 012368999999999999998874
No 19
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.84 E-value=2.1e-08 Score=91.50 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=43.0
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
+..++||+.+++.|.+ +.. +++.|+|++|+|||||++.+.++.... .+|+.
T Consensus 12 ~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~ 62 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD 62 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE
T ss_pred HHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE
Confidence 5679999999999999 763 599999999999999999999886532 46665
No 20
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.84 E-value=5.2e-09 Score=95.36 Aligned_cols=141 Identities=13% Similarity=0.145 Sum_probs=87.1
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCcccc--CCCCChHHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREES--QRPGGLGFLQQK 221 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s--~~~~~~~~l~~~ 221 (311)
+..++||+.+++.|.+++..+ +++.|+|++|+|||||++.++++.. .+|+.. .... ........+...
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDC-RELYAERGHITREELIKE 80 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEH-HHHHHTTTCBCHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEe-ecccccccCCCHHHHHHH
Confidence 567999999999999988742 6899999999999999999998752 566652 1110 001134455555
Q ss_pred HHHHHhc----------------CCC--CCCCH----HHHHHHhCC-CeEEEEEecCCChH---------HHHHhh---c
Q 042778 222 LLSKLLQ----------------DGI--VIPDI----ALSFRQLSR-RKVLIVLDDVTCFR---------QIKSLI---G 266 (311)
Q Consensus 222 ll~~l~~----------------~~~--~~~~~----~~l~~~L~~-kr~LlVLDdV~~~~---------~l~~l~---~ 266 (311)
+...+.. ... ..... ..+.+.+.. ++++|||||++... .+..+. .
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 5443321 000 11233 334443332 48999999997632 122221 0
Q ss_pred c-CCC-------------------------c-CCceEEEcCCCChHHHHHHHHHh
Q 042778 267 M-LRN-------------------------C-CVKEKYEMKELGDDHALELFSRH 294 (311)
Q Consensus 267 ~-~~~-------------------------~-~~~~~y~v~~L~~~ea~~Lf~~~ 294 (311)
. .+. . .....+++.+|+.+|+.+++...
T Consensus 161 ~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~ 215 (350)
T 2qen_A 161 SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRG 215 (350)
T ss_dssp HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHH
T ss_pred hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHH
Confidence 0 000 0 11247899999999999999764
No 21
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.78 E-value=5.8e-08 Score=83.05 Aligned_cols=141 Identities=14% Similarity=0.090 Sum_probs=82.8
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEec---------------Cccc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQN---------------VREE 208 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~---------------~~~~ 208 (311)
..+++|++..++.+...+..+. ..+.+.|+|++|+||||||+.+++.....+......+. +...
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 100 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEE
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEe
Confidence 3568999999999999887532 23578999999999999999999986543321100000 0000
Q ss_pred cCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCeEEEEEecCCC--hHHHHHhhc---c-CCC------------
Q 042778 209 SQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLSRRKVLIVLDDVTC--FRQIKSLIG---M-LRN------------ 270 (311)
Q Consensus 209 s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~~--~~~l~~l~~---~-~~~------------ 270 (311)
.............++..+... ...+++.+|||||++. ...++.+.. . ...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 101 DAASRTKVEDTRDLLDNVQYA------------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp ETTCGGGHHHHHHHHHSCCCS------------CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred cCcccccHHHHHHHHHHhhhc------------hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 000000011111111111000 0134679999999964 445555431 1 111
Q ss_pred -----cCCceEEEcCCCChHHHHHHHHHhhcC
Q 042778 271 -----CCVKEKYEMKELGDDHALELFSRHAFK 297 (311)
Q Consensus 271 -----~~~~~~y~v~~L~~~ea~~Lf~~~af~ 297 (311)
......+++++|+.++..+++...+..
T Consensus 169 ~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 169 LPVTILSRCLQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence 122468999999999999999988764
No 22
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.75 E-value=6.8e-08 Score=81.65 Aligned_cols=136 Identities=13% Similarity=0.180 Sum_probs=83.7
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccC-cCce-EEEecCccccCCCCChHHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSN-FEGS-CFLQNVREESQRPGGLGFLQQK 221 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~-F~~~-~wv~~~~~~s~~~~~~~~l~~~ 221 (311)
..+++|++..++.+..++.... .+.+.|+|.+|+||||||+.+++.+... +... +.+. .+. ..+...+...
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~ 88 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN----ASD-ERGIDVVRHK 88 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE----TTC-TTCHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec----ccc-ccChHHHHHH
Confidence 3578999999999999887542 3348999999999999999999986433 3222 2222 112 2333333222
Q ss_pred HHHHHhcCCCCCCCHHHHHHHhCCCeEEEEEecCCCh--HHHHHhh---cc--CCC----------------cCCceEEE
Q 042778 222 LLSKLLQDGIVIPDIALSFRQLSRRKVLIVLDDVTCF--RQIKSLI---GM--LRN----------------CCVKEKYE 278 (311)
Q Consensus 222 ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~~~--~~l~~l~---~~--~~~----------------~~~~~~y~ 278 (311)
+ ........ ....++.+|||||++.. ..++.+. .. ... ......++
T Consensus 89 ~-~~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 89 I-KEFARTAP----------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp H-HHHHTSCC----------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred H-HHHhcccC----------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 2 22111100 01257889999999753 3333332 11 111 12234889
Q ss_pred cCCCChHHHHHHHHHhhcC
Q 042778 279 MKELGDDHALELFSRHAFK 297 (311)
Q Consensus 279 v~~L~~~ea~~Lf~~~af~ 297 (311)
+++++.++..+++.+.+..
T Consensus 158 ~~~~~~~~~~~~l~~~~~~ 176 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEK 176 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987653
No 23
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.5e-07 Score=85.49 Aligned_cols=145 Identities=8% Similarity=0.069 Sum_probs=94.3
Q ss_pred CccchhhhHHHHHHhhcc--cCCCeEEEEEeccCcchhHHHHHHHHHhhccCc-----Cc--eEEEecCccccCCCCChH
Q 042778 146 QLVGVESRVEEIESLLGA--ESKDVYALGIWGIGGIDRTTIARAIFNKISSNF-----EG--SCFLQNVREESQRPGGLG 216 (311)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F-----~~--~~wv~~~~~~s~~~~~~~ 216 (311)
.+.||+.++.+|...|.. .......+-|+|++|.|||++++.+++++.... .. .+.+.+. . -.+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~----~-~~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL----E-LAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT----C-CC--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc----c-cCCHH
Confidence 378999999999988864 234577889999999999999999999864321 11 2344421 1 34567
Q ss_pred HHHHHHHHHHhcCCCC-CCCHHHHHHH---h---CCCeEEEEEecCCCh---HHHHHhhc----cCCC------------
Q 042778 217 FLQQKLLSKLLQDGIV-IPDIALSFRQ---L---SRRKVLIVLDDVTCF---RQIKSLIG----MLRN------------ 270 (311)
Q Consensus 217 ~l~~~ll~~l~~~~~~-~~~~~~l~~~---L---~~kr~LlVLDdV~~~---~~l~~l~~----~~~~------------ 270 (311)
.+...|+.++.+.... ......+.+. + .++.++|+||+++.. +.+-.+.. ....
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 7888888888765432 1222333333 2 357899999999864 33333321 0000
Q ss_pred ----c------CC-ceEEEcCCCChHHHHHHHHHhh
Q 042778 271 ----C------CV-KEKYEMKELGDDHALELFSRHA 295 (311)
Q Consensus 271 ----~------~~-~~~y~v~~L~~~ea~~Lf~~~a 295 (311)
. .. ...+..++++.+|-.+++.+++
T Consensus 176 ~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 176 IREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred chhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 0 11 2568899999999999998875
No 24
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.55 E-value=2.3e-07 Score=76.41 Aligned_cols=48 Identities=15% Similarity=0.273 Sum_probs=40.5
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...++|++..++++.+.+... ..+.+.|+|.+|+||||||+.+++.+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999988753 345678999999999999999999854
No 25
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.55 E-value=3.4e-07 Score=82.43 Aligned_cols=134 Identities=14% Similarity=0.236 Sum_probs=83.8
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccC-cCc-eEEEecCccccCCCCChHHHHHHH
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSN-FEG-SCFLQNVREESQRPGGLGFLQQKL 222 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~-F~~-~~wv~~~~~~s~~~~~~~~l~~~l 222 (311)
.+++|++..++.+..++..+ ..+.+.|+|++|+||||+|+.+++.+... +.. .+.+. .+. ..+...+ +.+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~-~~~~~~i-~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASD-DRGIDVV-RNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTS-CCSHHHH-HTH
T ss_pred HHHHCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----Ccc-ccChHHH-HHH
Confidence 57899999999999988743 23338999999999999999999986432 222 23333 122 2233322 222
Q ss_pred HHHHhcCCCCCCCHHHHHHHh-CCCeEEEEEecCCC--hHHHHHhh-----ccCCC----------------cCCceEEE
Q 042778 223 LSKLLQDGIVIPDIALSFRQL-SRRKVLIVLDDVTC--FRQIKSLI-----GMLRN----------------CCVKEKYE 278 (311)
Q Consensus 223 l~~l~~~~~~~~~~~~l~~~L-~~kr~LlVLDdV~~--~~~l~~l~-----~~~~~----------------~~~~~~y~ 278 (311)
+..+.... ..+ .+++.+||+||++. ...++.|. +.... ......++
T Consensus 93 ~~~~~~~~----------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 93 IKHFAQKK----------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp HHHHHHBC----------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred HHHHHhcc----------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 22222100 011 34688999999975 33344332 11111 22345899
Q ss_pred cCCCChHHHHHHHHHhhc
Q 042778 279 MKELGDDHALELFSRHAF 296 (311)
Q Consensus 279 v~~L~~~ea~~Lf~~~af 296 (311)
+++++.++..+++...+.
T Consensus 163 ~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHH
Confidence 999999999999998764
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.48 E-value=6.2e-07 Score=79.66 Aligned_cols=146 Identities=17% Similarity=0.259 Sum_probs=86.4
Q ss_pred CCCccchhhhHHHHHHhhccc-----------CCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCC
Q 042778 144 KNQLVGVESRVEEIESLLGAE-----------SKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRP 212 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~ 212 (311)
.++++|++..+++|.+.+... ....+.+.|+|.+|+||||||+++++.....|-. +. ..+.....
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~---v~-~~~~~~~~ 91 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIR---VV-GSELVKKF 91 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE---EE-GGGGCCCS
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE---Ee-hHHHHHhc
Confidence 567899999999998877431 1235568999999999999999999986543321 22 11111101
Q ss_pred CC-hHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCeEEEEEecCCCh----------------HHHHHhhc------cCC
Q 042778 213 GG-LGFLQQKLLSKLLQDGIVIPDIALSFRQLSRRKVLIVLDDVTCF----------------RQIKSLIG------MLR 269 (311)
Q Consensus 213 ~~-~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~~~----------------~~l~~l~~------~~~ 269 (311)
.+ .......+ +......+..+|+|||++.. ..+..+.. ...
T Consensus 92 ~~~~~~~~~~~----------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 92 IGEGASLVKDI----------------FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp TTHHHHHHHHH----------------HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred cchHHHHHHHH----------------HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 11 11111111 12222345689999999653 11222211 100
Q ss_pred C------------------c--CCceEEEcCCCChHHHHHHHHHhhcCCC-CCCCcHHHhh
Q 042778 270 N------------------C--CVKEKYEMKELGDDHALELFSRHAFKQN-NPHIGFEELS 309 (311)
Q Consensus 270 ~------------------~--~~~~~y~v~~L~~~ea~~Lf~~~af~~~-~~~~~~~~l~ 309 (311)
. . .....+.++.++.++..++|..++.... .+..++..|+
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~ 216 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIA 216 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHH
Confidence 1 1 2345789999999999999998876533 2334555554
No 27
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.42 E-value=5.5e-07 Score=74.04 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=40.7
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+++|++..++.+.+.+... ..+.+.|+|.+|+||||||+.+++....
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 457899999999999988642 3456789999999999999999998643
No 28
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=1.4e-06 Score=78.55 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=81.3
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCc-Cc-eEEEecCccccCCCCChHHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNF-EG-SCFLQNVREESQRPGGLGFLQQK 221 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F-~~-~~wv~~~~~~s~~~~~~~~l~~~ 221 (311)
..+++|++..++.+..++..+ ..+.+.|+|++|+||||+|+.+++.+.... .. ...+. .+. ..+...+. .
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~----~~~-~~~~~~~~-~ 95 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN----ASD-ERGINVIR-E 95 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE----TTC-HHHHHTTH-H
T ss_pred HHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee----ccc-cCchHHHH-H
Confidence 457899999999999988754 333489999999999999999999864332 11 12222 111 00111111 1
Q ss_pred HHHHHhcCCCCCCCHHHHHHHhCCCeEEEEEecCCCh--HHHHHhh-----ccCCC----------------cCCceEEE
Q 042778 222 LLSKLLQDGIVIPDIALSFRQLSRRKVLIVLDDVTCF--RQIKSLI-----GMLRN----------------CCVKEKYE 278 (311)
Q Consensus 222 ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~~~--~~l~~l~-----~~~~~----------------~~~~~~y~ 278 (311)
.+....... .....++.+||+||++.. +.++.|. +.... ......++
T Consensus 96 ~~~~~~~~~----------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 165 (327)
T 1iqp_A 96 KVKEFARTK----------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFR 165 (327)
T ss_dssp HHHHHHHSC----------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEE
T ss_pred HHHHHHhhC----------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEE
Confidence 111111000 001256789999999753 4444443 11111 11234789
Q ss_pred cCCCChHHHHHHHHHhhcC
Q 042778 279 MKELGDDHALELFSRHAFK 297 (311)
Q Consensus 279 v~~L~~~ea~~Lf~~~af~ 297 (311)
+++++.++..+++...+-.
T Consensus 166 ~~~l~~~~~~~~l~~~~~~ 184 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAEN 184 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHHHHHHh
Confidence 9999999999999887654
No 29
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.26 E-value=5.2e-06 Score=74.39 Aligned_cols=135 Identities=12% Similarity=0.151 Sum_probs=80.6
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc-CcCc-eEEEecCccccCCCCChHHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS-NFEG-SCFLQNVREESQRPGGLGFLQQK 221 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~-~F~~-~~wv~~~~~~s~~~~~~~~l~~~ 221 (311)
..+++|++..++.+.+++..+ ..+.+.|+|.+|+||||+|+.+++.+.. .+.. .+.+. ...... ...+..+...
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~ 91 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERG-IDVVRHKIKE 91 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTC-TTTSSHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccC-hHHHHHHHHH
Confidence 356899999999999888753 3334899999999999999999998532 2221 12222 111000 1111111111
Q ss_pred HHHHHhcCCCCCCCHHHHHHHh-CCCeEEEEEecCCCh--HHHHHhhccCC----C-----------------cCCceEE
Q 042778 222 LLSKLLQDGIVIPDIALSFRQL-SRRKVLIVLDDVTCF--RQIKSLIGMLR----N-----------------CCVKEKY 277 (311)
Q Consensus 222 ll~~l~~~~~~~~~~~~l~~~L-~~kr~LlVLDdV~~~--~~l~~l~~~~~----~-----------------~~~~~~y 277 (311)
+... ..+ .+++.+||+||++.. +..+.|..... . ......+
T Consensus 92 ~~~~---------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i 156 (319)
T 2chq_A 92 FART---------------APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (319)
T ss_dssp HHHS---------------CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEE
T ss_pred HHhc---------------CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEE
Confidence 1100 001 256789999999753 34444432111 1 1234589
Q ss_pred EcCCCChHHHHHHHHHhhcC
Q 042778 278 EMKELGDDHALELFSRHAFK 297 (311)
Q Consensus 278 ~v~~L~~~ea~~Lf~~~af~ 297 (311)
++.+++.++..+++...+-.
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~ 176 (319)
T 2chq_A 157 RFKPVPKEAMKKRLLEICEK 176 (319)
T ss_dssp ECCCCCHHHHHHHHHHHHHT
T ss_pred EecCCCHHHHHHHHHHHHHH
Confidence 99999999999999877644
No 30
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.21 E-value=5e-06 Score=79.09 Aligned_cols=130 Identities=15% Similarity=0.312 Sum_probs=80.7
Q ss_pred CCCccchhhhH---HHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHH
Q 042778 144 KNQLVGVESRV---EEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQ 220 (311)
Q Consensus 144 ~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~ 220 (311)
..+++|.+..+ ..+...+..+ ....+.|||.+|+||||||+.+++.....|.. +. .. ..+...+..
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~-----a~-~~~~~~ir~ 93 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVER---IS-----AV-TSGVKEIRE 93 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EE-----TT-TCCHHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EE-----ec-cCCHHHHHH
Confidence 45789998777 6666666643 35789999999999999999999987554422 11 11 233333322
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhCCCeEEEEEecCCCh--HHHHHhhccC-------------CC--------cCCceEE
Q 042778 221 KLLSKLLQDGIVIPDIALSFRQLSRRKVLIVLDDVTCF--RQIKSLIGML-------------RN--------CCVKEKY 277 (311)
Q Consensus 221 ~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~~~--~~l~~l~~~~-------------~~--------~~~~~~y 277 (311)
++... .......++.+|+||+++.. .+.+.|++.. +. .....++
T Consensus 94 -~~~~a------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~v~ 160 (447)
T 3pvs_A 94 -AIERA------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY 160 (447)
T ss_dssp -HHHHH------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEEEE
T ss_pred -HHHHH------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCceeEE
Confidence 22211 11122467889999999853 3333332110 00 2334588
Q ss_pred EcCCCChHHHHHHHHHhhcC
Q 042778 278 EMKELGDDHALELFSRHAFK 297 (311)
Q Consensus 278 ~v~~L~~~ea~~Lf~~~af~ 297 (311)
.+++++.++..+++.+.+-.
T Consensus 161 ~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 161 LLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp ECCCCCHHHHHHHHHHHHHC
T ss_pred eeCCcCHHHHHHHHHHHHHH
Confidence 99999999999999887543
No 31
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.21 E-value=1.5e-05 Score=69.53 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=39.1
Q ss_pred CCCccchhhhHHHHHHhhccc----------CCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 144 KNQLVGVESRVEEIESLLGAE----------SKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
-.+++|.+..++.+.+++..- ....+-+.|+|.+|+|||+||+++++.....
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP 66 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 457899998888887765321 0224568899999999999999999986543
No 32
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=5.6e-06 Score=80.19 Aligned_cols=144 Identities=15% Similarity=0.153 Sum_probs=84.0
Q ss_pred CCCccchhhhHHHHHHhhcccC---------------CCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccc
Q 042778 144 KNQLVGVESRVEEIESLLGAES---------------KDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREE 208 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~---------------~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~ 208 (311)
..+++|++..++++..+|.... ...+.+.|+|++|+||||||+++++... +. .+.+. .
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in----~ 110 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN----A 110 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC----T
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe----C
Confidence 4578999999999999986410 1247899999999999999999999873 22 12222 1
Q ss_pred cCCCCChHHHHHHHHHHHhcCCCCCCCH-HHHHHH--hCCCeEEEEEecCCCh--------HHHHHhhccCCC-------
Q 042778 209 SQRPGGLGFLQQKLLSKLLQDGIVIPDI-ALSFRQ--LSRRKVLIVLDDVTCF--------RQIKSLIGMLRN------- 270 (311)
Q Consensus 209 s~~~~~~~~l~~~ll~~l~~~~~~~~~~-~~l~~~--L~~kr~LlVLDdV~~~--------~~l~~l~~~~~~------- 270 (311)
+. .... .+....+....... .+... ....+. ...++.+|+||+|+.. ..+..+......
T Consensus 111 s~-~~~~-~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~ 187 (516)
T 1sxj_A 111 SD-VRSK-TLLNAGVKNALDNM-SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICN 187 (516)
T ss_dssp TS-CCCH-HHHHHTGGGGTTBC-CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEES
T ss_pred CC-cchH-HHHHHHHHHHhccc-cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEc
Confidence 22 2222 22222222211111 11111 111111 2357789999999743 233333211111
Q ss_pred ----------cCCceEEEcCCCChHHHHHHHHHhhcC
Q 042778 271 ----------CCVKEKYEMKELGDDHALELFSRHAFK 297 (311)
Q Consensus 271 ----------~~~~~~y~v~~L~~~ea~~Lf~~~af~ 297 (311)
......+++++++.++..+++.+.+..
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 223457899999999999999887654
No 33
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.14 E-value=2.8e-05 Score=71.30 Aligned_cols=141 Identities=14% Similarity=0.138 Sum_probs=81.6
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLL 223 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll 223 (311)
..+++|++..++.+...+..+. -...+.|+|..|+||||+|+.+++.+....... .. ..+...-...+.
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---------~~-~~~~~~~~~~~~ 83 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---------AT-PCGVCDNCREIE 83 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---------SS-CCSSSHHHHHHH
T ss_pred hhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---------CC-CCcccHHHHHHh
Confidence 3569999999999999886432 245788999999999999999998764432110 00 000000000110
Q ss_pred HH-------HhcCC-CCCCCHHHHHHHh-----CCCeEEEEEecCCC--hHHHHHhh----ccCCC--------------
Q 042778 224 SK-------LLQDG-IVIPDIALSFRQL-----SRRKVLIVLDDVTC--FRQIKSLI----GMLRN-------------- 270 (311)
Q Consensus 224 ~~-------l~~~~-~~~~~~~~l~~~L-----~~kr~LlVLDdV~~--~~~l~~l~----~~~~~-------------- 270 (311)
.. +.... .....+..+.+.+ .+++.+||+||++. ...++.|. .....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 00000 0122233333333 24678999999974 33444442 11111
Q ss_pred ---cCCceEEEcCCCChHHHHHHHHHhh
Q 042778 271 ---CCVKEKYEMKELGDDHALELFSRHA 295 (311)
Q Consensus 271 ---~~~~~~y~v~~L~~~ea~~Lf~~~a 295 (311)
......+++.+++.++..+++...+
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHH
Confidence 2234688999999999999998765
No 34
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.14 E-value=5.7e-05 Score=67.79 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=40.0
Q ss_pred CCCccchhhhHHHHHHhhcc-----------cCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-.+++|.+..+++|.+.+.. +-...+.+.|+|.+|+||||||+++++...
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 45789999988888877642 113356789999999999999999999875
No 35
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.12 E-value=1.3e-05 Score=71.73 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=37.6
Q ss_pred CccchhhhHHHHHHhhccc-------------CCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 146 QLVGVESRVEEIESLLGAE-------------SKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
+++|.+..++.|.+++..- ......+.|+|.+|+|||+||+++++.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5889888888887665421 233557899999999999999999987543
No 36
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.12 E-value=8.4e-06 Score=68.49 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=39.0
Q ss_pred CCccchh----hhHHHHHHhhcccCCC--eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 145 NQLVGVE----SRVEEIESLLGAESKD--VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 145 ~~~vGr~----~~~~~l~~~L~~~~~~--~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
+++++.. ..++.+..++...... .+.+.|+|.+|+||||||+++++.........+++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4556543 2344445555433221 268899999999999999999998765544556665
No 37
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.08 E-value=1.4e-05 Score=72.53 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=40.6
Q ss_pred CCCccchhhhHHHHHHhhcc----------cCCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 144 KNQLVGVESRVEEIESLLGA----------ESKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
-.+++|.+..++.|.+.+.. .....+-+.|+|.+|+|||+||+++++.....
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 78 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST 78 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC
Confidence 45789999999999887721 11124578999999999999999999986543
No 38
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.05 E-value=2.3e-05 Score=70.61 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=41.0
Q ss_pred CCCccchhhhHHHHHHhhccc---CCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAE---SKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+++|++..+..+..++... ......+.|+|++|+||||||+++++....
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~ 64 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV 64 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999888877531 223467889999999999999999998753
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.05 E-value=4.2e-05 Score=70.42 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=40.6
Q ss_pred CCCccchhhhHHHHHHhhcc----------cCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGA----------ESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
-.+++|.+..++.|.+.+.. .....+.+.|+|.+|+|||+||+++++....
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~ 143 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA 143 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC
Confidence 45789999999999887742 1123567899999999999999999988643
No 40
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.03 E-value=9.1e-05 Score=67.21 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=38.5
Q ss_pred CCCccchhhhHHHHHHhhcc---------c-CCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 144 KNQLVGVESRVEEIESLLGA---------E-SKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-++++|.+..++.|.+.+.. + ....+-+.|+|++|+|||+||+++++..
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 45789999888888876531 1 1124678999999999999999999986
No 41
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.97 E-value=7.9e-05 Score=68.32 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=39.1
Q ss_pred CCCccchhhhHHHHHHh---hcccCCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 144 KNQLVGVESRVEEIESL---LGAESKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~---L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
.++++|++..++.+..+ +..+....+.+.|+|.+|+|||+||+++++.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 45799999887765443 33332224689999999999999999999987643
No 42
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.95 E-value=7.3e-05 Score=67.56 Aligned_cols=136 Identities=13% Similarity=0.101 Sum_probs=74.0
Q ss_pred CCCcc-chhh--hHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHH
Q 042778 144 KNQLV-GVES--RVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQ 220 (311)
Q Consensus 144 ~~~~v-Gr~~--~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~ 220 (311)
.++++ |... ....+..++.........+.|+|.+|+||||||+.+++.....-...+++. ...+..
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-----------~~~~~~ 78 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-----------ADDFAQ 78 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-----------HHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-----------HHHHHH
Confidence 34555 5332 233344444432223567899999999999999999998644311223443 122233
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhCCCeEEEEEecCCChH----HHHHhh-------ccCCC-------------------
Q 042778 221 KLLSKLLQDGIVIPDIALSFRQLSRRKVLIVLDDVTCFR----QIKSLI-------GMLRN------------------- 270 (311)
Q Consensus 221 ~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~~~~----~l~~l~-------~~~~~------------------- 270 (311)
.+...+... ....+...+. +..+|+|||+.... ..+.+. .....
T Consensus 79 ~~~~~~~~~-----~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L 152 (324)
T 1l8q_A 79 AMVEHLKKG-----TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRL 152 (324)
T ss_dssp HHHHHHHHT-----CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHH
T ss_pred HHHHHHHcC-----cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHh
Confidence 333333211 1122233332 35689999996432 112211 00000
Q ss_pred ---cCCceEEEcCCCChHHHHHHHHHhhcC
Q 042778 271 ---CCVKEKYEMKELGDDHALELFSRHAFK 297 (311)
Q Consensus 271 ---~~~~~~y~v~~L~~~ea~~Lf~~~af~ 297 (311)
.....++++++ +.++..+++.+++-.
T Consensus 153 ~sR~~~~~~i~l~~-~~~e~~~il~~~~~~ 181 (324)
T 1l8q_A 153 VSRFEGGILVEIEL-DNKTRFKIIKEKLKE 181 (324)
T ss_dssp HHHHHTSEEEECCC-CHHHHHHHHHHHHHH
T ss_pred hhcccCceEEEeCC-CHHHHHHHHHHHHHh
Confidence 12336789999 999999999988753
No 43
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.93 E-value=1.5e-05 Score=75.72 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=69.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCce--EEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGS--CFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDIALSFRQLSR 245 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~--~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~ 245 (311)
...+.|+|.+|+||||||+++++.+...+... +++. ...+...+...+... ....+...+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 193 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEG-----KLNEFREKYRK 193 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-----------HHHHHHHHHHHHHTT-----CHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHcc-----cHHHHHHHhcC
Confidence 66789999999999999999999876655332 3333 122333444333321 12344455554
Q ss_pred CeEEEEEecCCCh----HHHHHhhc------cCCC-----------------------cCCceEEEcCCCChHHHHHHHH
Q 042778 246 RKVLIVLDDVTCF----RQIKSLIG------MLRN-----------------------CCVKEKYEMKELGDDHALELFS 292 (311)
Q Consensus 246 kr~LlVLDdV~~~----~~l~~l~~------~~~~-----------------------~~~~~~y~v~~L~~~ea~~Lf~ 292 (311)
+.-+|+|||++.. ...+.+.. ..+. ...+.++.+++++.++-.+++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 6678999999632 12222210 0000 1123578899999999999998
Q ss_pred Hhhc
Q 042778 293 RHAF 296 (311)
Q Consensus 293 ~~af 296 (311)
+.+-
T Consensus 274 ~~~~ 277 (440)
T 2z4s_A 274 KMLE 277 (440)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 44
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=3.7e-05 Score=69.94 Aligned_cols=145 Identities=12% Similarity=0.128 Sum_probs=81.2
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc--CcCce-EEEecCccccCCCCChHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS--NFEGS-CFLQNVREESQRPGGLGFLQQ 220 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~--~F~~~-~wv~~~~~~s~~~~~~~~l~~ 220 (311)
..+++|++..++.+...+..+. ...+.|+|.+|+||||+|+.+++.+.. .+... ..+. .+. ..+...+..
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~----~~~-~~~~~~~~~ 108 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN----ASD-ERGISIVRE 108 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC----SSS-CCCHHHHTT
T ss_pred HHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc----ccc-ccchHHHHH
Confidence 4678999999999999887542 233899999999999999999988542 12222 1222 111 223333222
Q ss_pred HHHHHHhcCCC-CCCCHHHHHHHhCCCeEEEEEecCCC--hHHHHHhh---c--cCCC----------------cCCceE
Q 042778 221 KLLSKLLQDGI-VIPDIALSFRQLSRRKVLIVLDDVTC--FRQIKSLI---G--MLRN----------------CCVKEK 276 (311)
Q Consensus 221 ~ll~~l~~~~~-~~~~~~~l~~~L~~kr~LlVLDdV~~--~~~l~~l~---~--~~~~----------------~~~~~~ 276 (311)
.+........ .... ......-..+.-+|++|+++. ......|. . .... ......
T Consensus 109 -~~~~~~~~~~~~~~~-~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 109 -KVKNFARLTVSKPSK-HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp -HHHHHHHSCCCCCCT-THHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred -HHHHHhhhcccccch-hhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCce
Confidence 2222211100 0000 001111124557899999864 23333332 1 1110 112347
Q ss_pred EEcCCCChHHHHHHHHHhhcC
Q 042778 277 YEMKELGDDHALELFSRHAFK 297 (311)
Q Consensus 277 y~v~~L~~~ea~~Lf~~~af~ 297 (311)
+++++++.++..+.+...+-.
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~ 207 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQ 207 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHT
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 899999999999999887643
No 45
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.88 E-value=9.1e-05 Score=75.96 Aligned_cols=48 Identities=15% Similarity=0.298 Sum_probs=40.0
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+.++|++..+..+...|.... ...+.|+|.+|+||||||+.+++.+.
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999886432 33468999999999999999999863
No 46
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.87 E-value=7.3e-05 Score=70.96 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=39.2
Q ss_pred CCCccchhhhHHHHHHhhcc---------c-CCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 144 KNQLVGVESRVEEIESLLGA---------E-SKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-.+++|.+..++.|.+.+.. + ....+-+.|+|++|+|||+||+++++..
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999998888876631 1 1225678999999999999999999986
No 47
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.0004 Score=64.78 Aligned_cols=146 Identities=17% Similarity=0.255 Sum_probs=85.9
Q ss_pred CCccchhhhHHHHHHhhcc-----------cCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCC
Q 042778 145 NQLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPG 213 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~ 213 (311)
+++.|.+..+++|.+.+.. +-...+=|.++|++|.|||.||+++++.....|-. +. ..+...+..
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~---v~-~s~l~sk~v 223 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR---VS-GAELVQKYI 223 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE---EE-GGGGSCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE---EE-hHHhhcccc
Confidence 5678999988888875532 11235678899999999999999999987665421 22 111111011
Q ss_pred C-hHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCeEEEEEecCCChH----------------HHHHhh----ccCCC--
Q 042778 214 G-LGFLQQKLLSKLLQDGIVIPDIALSFRQLSRRKVLIVLDDVTCFR----------------QIKSLI----GMLRN-- 270 (311)
Q Consensus 214 ~-~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~~~~----------------~l~~l~----~~~~~-- 270 (311)
+ -....+.++... -....++|.+|+++..- .+..++ +....
T Consensus 224 Gese~~vr~lF~~A----------------r~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 224 GEGSRMVRELFVMA----------------REHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp THHHHHHHHHHHHH----------------HHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred chHHHHHHHHHHHH----------------HHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 1 112222222211 13467899999987310 111121 11110
Q ss_pred --------------------cCCceEEEcCCCChHHHHHHHHHhhcCCC-CCCCcHHHhhc
Q 042778 271 --------------------CCVKEKYEMKELGDDHALELFSRHAFKQN-NPHIGFEELSS 310 (311)
Q Consensus 271 --------------------~~~~~~y~v~~L~~~ea~~Lf~~~af~~~-~~~~~~~~l~~ 310 (311)
...+..++++..+.++-.++|..+.=+-+ .+..++.+|++
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~ 348 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAE 348 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHH
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHH
Confidence 24567899999999999999987753322 23346777664
No 48
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.84 E-value=5.1e-05 Score=66.84 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=37.5
Q ss_pred CCCccchhhhHHHHHH-------hhcc-cCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIES-------LLGA-ESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~-------~L~~-~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
...++|....++++.. .+.. .....+.+.|+|.+|+|||+||+++++....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~ 90 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF 90 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4567888777666665 2321 1334778999999999999999999998543
No 49
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.82 E-value=0.0001 Score=68.58 Aligned_cols=51 Identities=14% Similarity=0.247 Sum_probs=40.4
Q ss_pred CCCccchhhhHHHHHHhhccc----------CCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAE----------SKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
-.+++|.+..++.|..++... ....+-+.|+|..|+|||+||+++++....
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~ 174 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA 174 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC
Confidence 467899999999998877321 112467899999999999999999988643
No 50
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.82 E-value=6.8e-05 Score=66.76 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=40.9
Q ss_pred CCCccchhhhHHHHHHhhccc----------CCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 144 KNQLVGVESRVEEIESLLGAE----------SKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
-.+++|.+..++.+.+.+... ....+.+.|+|.+|+||||||+++++.....
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 457899999999998877421 1124678999999999999999999986543
No 51
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.81 E-value=6.6e-05 Score=69.11 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=39.9
Q ss_pred CCCccchhhhHHHHHHhhccc----------CCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 144 KNQLVGVESRVEEIESLLGAE----------SKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
-.+++|.+..++.|.+.+... ....+-|.|+|.+|+|||+||+++++.....
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~ 111 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST 111 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 457899999999998876311 1123468899999999999999999987543
No 52
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00043 Score=65.32 Aligned_cols=147 Identities=18% Similarity=0.296 Sum_probs=85.7
Q ss_pred CCCccchhhhHHHHHHhhcc-----------cCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCC
Q 042778 144 KNQLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRP 212 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~ 212 (311)
-+++.|.+..+++|.+.+.. +-.-.+=|.++|++|.|||+||+++++.....|- .+. ..++..+.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~---~v~-~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI---FSP-ASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE---EEE-GGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe-hhhhcccc
Confidence 35678999988888775532 1123577899999999999999999998765542 222 11111101
Q ss_pred CCh-HHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCeEEEEEecCCCh-------------H---HHHHhh----ccCC--
Q 042778 213 GGL-GFLQQKLLSKLLQDGIVIPDIALSFRQLSRRKVLIVLDDVTCF-------------R---QIKSLI----GMLR-- 269 (311)
Q Consensus 213 ~~~-~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~~~-------------~---~l~~l~----~~~~-- 269 (311)
.+- ....+.++.. .-....++|.+|+++.. . .+..|+ +...
T Consensus 256 ~Gese~~ir~~F~~----------------A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 256 IGESARIIREMFAY----------------AKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp SSHHHHHHHHHHHH----------------HHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred chHHHHHHHHHHHH----------------HHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 111 1122222111 11356789999998731 0 111121 1111
Q ss_pred C--------------------cCCceEEEcCCCChHHHHHHHHHhhcCCC-CCCCcHHHhhc
Q 042778 270 N--------------------CCVKEKYEMKELGDDHALELFSRHAFKQN-NPHIGFEELSS 310 (311)
Q Consensus 270 ~--------------------~~~~~~y~v~~L~~~ea~~Lf~~~af~~~-~~~~~~~~l~~ 310 (311)
. ...+..++++..+.++-.++|..+.-+-. .+..++..|++
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~ 381 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVK 381 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHH
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHH
Confidence 0 12467788999999999999987764432 34456777664
No 53
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.80 E-value=0.00016 Score=65.28 Aligned_cols=124 Identities=14% Similarity=0.155 Sum_probs=74.9
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHH
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLL 223 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll 223 (311)
.++++|.+..++.+..++..+. -..++.+.|.+|+||||+|+++.+.+... .+.+. . . ..+...+.. ++
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~----~-~-~~~~~~i~~-~~ 93 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN----G-S-DCKIDFVRG-PL 93 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE----T-T-TCCHHHHHT-HH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc----c-c-ccCHHHHHH-HH
Confidence 4678999999999999887432 24577888999999999999999887422 22232 1 1 233333322 22
Q ss_pred HHHhcCCCCCCCHHHHHHHhCCCeEEEEEecCCChH---HHHHhhc-----cCCC----------------cCCceEEEc
Q 042778 224 SKLLQDGIVIPDIALSFRQLSRRKVLIVLDDVTCFR---QIKSLIG-----MLRN----------------CCVKEKYEM 279 (311)
Q Consensus 224 ~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~~~~---~l~~l~~-----~~~~----------------~~~~~~y~v 279 (311)
....... .+.+++.+|+|||++... ..+.|.. .... .....++++
T Consensus 94 ~~~~~~~-----------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~ 162 (324)
T 3u61_B 94 TNFASAA-----------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITF 162 (324)
T ss_dssp HHHHHBC-----------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEEC
T ss_pred HHHHhhc-----------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEe
Confidence 2211110 012477899999998753 3444421 0011 112357899
Q ss_pred CCCChHHHHH
Q 042778 280 KELGDDHALE 289 (311)
Q Consensus 280 ~~L~~~ea~~ 289 (311)
++++.++-.+
T Consensus 163 ~~~~~~e~~~ 172 (324)
T 3u61_B 163 GQPTDEDKIE 172 (324)
T ss_dssp CCCCHHHHHH
T ss_pred CCCCHHHHHH
Confidence 9999887433
No 54
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.78 E-value=7.6e-05 Score=61.42 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=29.9
Q ss_pred hhhHHHHHHhhcccC-CCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 151 ESRVEEIESLLGAES-KDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 151 ~~~~~~l~~~L~~~~-~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...++.+.+++..-. .....+.|+|..|+||||||+++++.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334444444443211 2256899999999999999999999864
No 55
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.00063 Score=64.42 Aligned_cols=146 Identities=18% Similarity=0.257 Sum_probs=86.0
Q ss_pred CCccchhhhHHHHHHhhcc-----------cCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCC
Q 042778 145 NQLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPG 213 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~ 213 (311)
.++.|.+..+++|.+.+.. +-.-.+-|.++|++|.|||+||+++++.....|-. +. ..++..+..
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~---vs-~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIR---VI-GSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE---EE-GGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE---EE-hHHhhcccC
Confidence 5788999988888875432 11336778999999999999999999987655421 22 111111011
Q ss_pred Ch-HHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCeEEEEEecCCChH----------------H----HHHhhccCCC--
Q 042778 214 GL-GFLQQKLLSKLLQDGIVIPDIALSFRQLSRRKVLIVLDDVTCFR----------------Q----IKSLIGMLRN-- 270 (311)
Q Consensus 214 ~~-~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~~~~----------------~----l~~l~~~~~~-- 270 (311)
+- ....+.++.. .-....++|++|+++..- . +..+-+....
T Consensus 285 Gesek~ir~lF~~----------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 285 GEGARMVRELFEM----------------ARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp SHHHHHHHHHHHH----------------HHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred CHHHHHHHHHHHH----------------HHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 11 1222222221 123467899999987310 1 1111111110
Q ss_pred --------------------cCCceEEEcCCCChHHHHHHHHHhhcCCC-CCCCcHHHhhc
Q 042778 271 --------------------CCVKEKYEMKELGDDHALELFSRHAFKQN-NPHIGFEELSS 310 (311)
Q Consensus 271 --------------------~~~~~~y~v~~L~~~ea~~Lf~~~af~~~-~~~~~~~~l~~ 310 (311)
...+..++++..+.++-.++|..+.=+-. ...-++..|++
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~ 409 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISR 409 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHH
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 24577899999999999999987764322 23345666653
No 56
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.77 E-value=0.00024 Score=68.28 Aligned_cols=51 Identities=22% Similarity=0.370 Sum_probs=40.6
Q ss_pred CCCccchhhhHHHHHHhhccc-----------CCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAE-----------SKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+++|.+..+++|.+++... ....+-|.|+|.+|+|||+||+++++....
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~ 264 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC
Confidence 346899999999998877532 233556899999999999999999988643
No 57
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.76 E-value=1.4e-05 Score=68.30 Aligned_cols=58 Identities=16% Similarity=0.203 Sum_probs=38.8
Q ss_pred CCCccchh---hhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 144 KNQLVGVE---SRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 144 ~~~~vGr~---~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
.++++|.+ ..+..+..++... ..+.+.|+|.+|+||||||+.+++..........++.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 35677633 4455555555432 3567899999999999999999998655433445555
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.74 E-value=0.00022 Score=72.09 Aligned_cols=48 Identities=23% Similarity=0.289 Sum_probs=40.1
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+.++|++..++.+.+.|... ...-+.|+|.+|+||||||+.+++.+.
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 467899999999999988743 234568999999999999999999753
No 59
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.74 E-value=0.00014 Score=66.21 Aligned_cols=47 Identities=26% Similarity=0.291 Sum_probs=37.8
Q ss_pred CCCccchhhhHHHHHHhh-cccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 144 KNQLVGVESRVEEIESLL-GAESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+++|.+..++.+.+.+ ..+ ....+.|+|..|+||||+|+.++..+
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~--~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPR--DLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTT--CCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHhhCC--CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999888888 433 22238999999999999999999864
No 60
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.73 E-value=1.4e-05 Score=63.64 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=35.0
Q ss_pred CccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 146 QLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
+++|.+..++++.+.+..-.....-|.|+|..|+|||++|+++++...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 578999888888887754222233477999999999999999988654
No 61
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.68 E-value=0.00021 Score=68.30 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=40.4
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
.+.+||++..++.+...|.... ..-+.|+|.+|+|||+||+.+++.+..
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4579999999999999886432 334579999999999999999998644
No 62
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.61 E-value=0.0004 Score=60.32 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=35.4
Q ss_pred CCCccchhhhHHHHHHhhccc-C---------CCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAE-S---------KDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~-~---------~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.++++|.+....++.++...- . .-.+-+.|+|..|+||||||++++....
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 457888887776666544310 0 0012389999999999999999998765
No 63
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.60 E-value=0.00077 Score=64.38 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=38.3
Q ss_pred CCCccchhhhHHHHHHhhcc--c--------CCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 144 KNQLVGVESRVEEIESLLGA--E--------SKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
..+++|.+..++++.+++.. . ..-.+-+.|+|++|+||||||++++++....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~ 76 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP 76 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 45789999888777775532 1 0113348899999999999999999986543
No 64
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00033 Score=66.09 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=40.8
Q ss_pred CCCccchhhhHHHHHHhhcc-----------cCCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 144 KNQLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
-.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....|
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f 243 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF 243 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE
Confidence 35778999998888875432 112366789999999999999999999876544
No 65
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.57 E-value=0.00014 Score=63.43 Aligned_cols=52 Identities=21% Similarity=0.235 Sum_probs=38.0
Q ss_pred CCCccchhhhHHHHHHhhcc---c-------CCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 144 KNQLVGVESRVEEIESLLGA---E-------SKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
-++++|.+..++++.+++.. . ..-.+-+.|+|..|+||||||+++++.....
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 72 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 72 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC
Confidence 45789999888777665432 1 0113458899999999999999999986443
No 66
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.55 E-value=0.00059 Score=69.10 Aligned_cols=147 Identities=16% Similarity=0.241 Sum_probs=85.1
Q ss_pred CCCccchhhhHHHHHHhhcc-----------cCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCC
Q 042778 144 KNQLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRP 212 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~ 212 (311)
-+++.|.+..+++|.+++.. +-...+-|.++|++|+|||+||++++++...+| +.+....-++. .
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~~~~l~sk-~ 278 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLINGPEIMSK-L 278 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEEHHHHHSS-C
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEEhHHhhcc-c
Confidence 45678999888888876532 112256799999999999999999999875543 22221000111 1
Q ss_pred CC-hHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCeEEEEEecCCChH-------------HHHHhh----c---cC---
Q 042778 213 GG-LGFLQQKLLSKLLQDGIVIPDIALSFRQLSRRKVLIVLDDVTCFR-------------QIKSLI----G---ML--- 268 (311)
Q Consensus 213 ~~-~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~~~~-------------~l~~l~----~---~~--- 268 (311)
.+ .....+. ..........++|+||+++..- .+..|+ + ..
T Consensus 279 ~gese~~lr~----------------lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 279 AGESESNLRK----------------AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp TTHHHHHHHH----------------HHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred chHHHHHHHH----------------HHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 11 1111111 1222234678899999986310 111111 0 00
Q ss_pred -----C---C--------cCCceEEEcCCCChHHHHHHHHHhhcCCC-CCCCcHHHhhc
Q 042778 269 -----R---N--------CCVKEKYEMKELGDDHALELFSRHAFKQN-NPHIGFEELSS 310 (311)
Q Consensus 269 -----~---~--------~~~~~~y~v~~L~~~ea~~Lf~~~af~~~-~~~~~~~~l~~ 310 (311)
+ . ...+..+++...+.++-.++|..+.-+.. ....++.+|++
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~ 401 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHH
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHH
Confidence 0 0 13567889999999999999987753322 23445666653
No 67
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.54 E-value=5e-05 Score=60.54 Aligned_cols=47 Identities=23% Similarity=0.250 Sum_probs=36.5
Q ss_pred CccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 146 QLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
+++|....++++.+.+..-.....-|.|+|..|+|||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999988775433333457899999999999999999874
No 68
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.50 E-value=0.0007 Score=59.71 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=36.5
Q ss_pred CCCccchhhhHHHHHHhhccc-C---------CCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAE-S---------KDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~-~---------~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.++++|.+..+.++.++...- . .-.+-+.|+|..|+||||||++++....
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 567899988777776654321 0 0012289999999999999999998865
No 69
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.50 E-value=0.00055 Score=62.25 Aligned_cols=134 Identities=13% Similarity=0.224 Sum_probs=76.0
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccC-cCceEEEecCccccCCCCChHHHHHHHH
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSN-FEGSCFLQNVREESQRPGGLGFLQQKLL 223 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~-F~~~~wv~~~~~~s~~~~~~~~l~~~ll 223 (311)
.+++|.+..++.|...+..+ ....+.++|..|+||||+|+.+++.+... +...+.-.+ .+. ..+...+.. ++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~---~~~-~~~~~~ir~-~i 97 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN---ASD-DRGIDVVRN-QI 97 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC---TTS-CCSHHHHHT-HH
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc---Ccc-cccHHHHHH-HH
Confidence 45788888888888777643 33348999999999999999999985432 221111111 122 233333322 22
Q ss_pred HHHhcCCCCCCCHHHHHHHhCCCeEEEEEecCCC--hHHHHHhhc---cC-CC-----------------cCCceEEEcC
Q 042778 224 SKLLQDGIVIPDIALSFRQLSRRKVLIVLDDVTC--FRQIKSLIG---ML-RN-----------------CCVKEKYEMK 280 (311)
Q Consensus 224 ~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~~--~~~l~~l~~---~~-~~-----------------~~~~~~y~v~ 280 (311)
........ .+...+-++|+|+++. .+..+.|.. .+ .. ......+.+.
T Consensus 98 ~~~~~~~~----------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~ 167 (340)
T 1sxj_C 98 KDFASTRQ----------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQ 167 (340)
T ss_dssp HHHHHBCC----------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred HHHHhhcc----------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEecc
Confidence 22211000 0123467888998864 233333321 10 00 1223478899
Q ss_pred CCChHHHHHHHHHhh
Q 042778 281 ELGDDHALELFSRHA 295 (311)
Q Consensus 281 ~L~~~ea~~Lf~~~a 295 (311)
+++.++..+.+...+
T Consensus 168 ~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 168 PLPQEAIERRIANVL 182 (340)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999888877655
No 70
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00097 Score=62.58 Aligned_cols=53 Identities=26% Similarity=0.428 Sum_probs=40.6
Q ss_pred CCCccchhhhHHHHHHhhcc-----------cCCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 144 KNQLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
-+++.|.+..+++|.+.+.. +-.-.+=|.++|++|.|||.||+++++.....|
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f 244 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF 244 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE
Confidence 35677899988888775532 112256799999999999999999999876554
No 71
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.48 E-value=0.00022 Score=63.63 Aligned_cols=51 Identities=12% Similarity=0.315 Sum_probs=39.8
Q ss_pred CCccchhhhHHHHHHhhcccC------CC-eEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 145 NQLVGVESRVEEIESLLGAES------KD-VYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~------~~-~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
..++|.+..++.+...+.... +. ...+.|+|..|+||||+|+.+++.....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 467899988888887775421 11 4689999999999999999999986443
No 72
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.43 E-value=0.01 Score=52.23 Aligned_cols=51 Identities=20% Similarity=0.155 Sum_probs=34.5
Q ss_pred CCCccchhhhHHHHHHhhcc--c--------C-CCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGA--E--------S-KDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~--~--------~-~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
-.++.|.+..+++|.+.+.. . + .-.+-++|+|.+|.||||||++++.....
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC
Confidence 35678888887777764321 0 0 11122999999999999999999987644
No 73
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.40 E-value=9.2e-05 Score=67.15 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=42.7
Q ss_pred CCCccchhhhHHHHHHhhccc---CCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 144 KNQLVGVESRVEEIESLLGAE---SKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
..+++|++..++.+..++... ......+.|+|.+|+|||+||+++++.....|
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~ 83 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI 83 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 457899999999999888642 23356789999999999999999998865443
No 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.40 E-value=0.00076 Score=68.16 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=40.1
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+.+||++..++.+...|.... ..-+.++|.+|+|||++|+.+++.+.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 4579999999999999886432 33478999999999999999999863
No 75
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.35 E-value=0.00022 Score=63.75 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=25.5
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
..+.+.++|++|+|||+||+++++.....|
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~ 64 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINP 64 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 356889999999999999999999875443
No 76
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.35 E-value=0.00054 Score=65.11 Aligned_cols=52 Identities=25% Similarity=0.274 Sum_probs=39.4
Q ss_pred CCCccchhhhHHHHHHhhc---ccCCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 144 KNQLVGVESRVEEIESLLG---AESKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
.++++|.+..++.+..++. .+....+-+.++|++|+|||+||+++++.....
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 4689999988776655443 222224568899999999999999999987643
No 77
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.34 E-value=0.0026 Score=61.08 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=37.8
Q ss_pred CCCCccchhhhHHHHHHhhcc--cC--------CCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 143 NKNQLVGVESRVEEIESLLGA--ES--------KDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~--~~--------~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...+++|.+..+.++.++... .. .-.+-+.|+|.+|+||||||++++....
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999887777765432 10 0123389999999999999999998865
No 78
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.29 E-value=0.00058 Score=61.50 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=33.9
Q ss_pred hHHHHHHhhcccCC-CeEEEEEeccCcchhHHHHHHHHHhhc-cCcCceEEEe
Q 042778 153 RVEEIESLLGAESK-DVYALGIWGIGGIDRTTIARAIFNKIS-SNFEGSCFLQ 203 (311)
Q Consensus 153 ~~~~l~~~L~~~~~-~~~vi~I~GmgGiGKTtLA~~v~~~~~-~~F~~~~wv~ 203 (311)
.+..+.+++..... ....+.|+|..|+|||+||.++++... ..-..+.++.
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34444455543222 246788999999999999999999865 4433344554
No 79
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.25 E-value=0.0028 Score=56.93 Aligned_cols=127 Identities=6% Similarity=0.033 Sum_probs=74.9
Q ss_pred chhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh---ccCcCceEEEecCccccCCCCChHHHHHHHHHH
Q 042778 149 GVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI---SSNFEGSCFLQNVREESQRPGGLGFLQQKLLSK 225 (311)
Q Consensus 149 Gr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~---~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~ 225 (311)
|.+..++.|...+..+. .+...++|+.|.||||+|+.+.+.. .........+. .+....++..+. .++..
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~----~~~~~~~id~ir-~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID----PEGENIGIDDIR-TIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC----CSSSCBCHHHHH-HHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc----CCcCCCCHHHHH-HHHHH
Confidence 44556677777776443 6789999999999999999998752 11122334443 111023333332 34433
Q ss_pred HhcCCCCCCCHHHHHHHhCCCeEEEEEecCCC--hHHHHHhh----ccCCC----------------cCCceEEEcCCCC
Q 042778 226 LLQDGIVIPDIALSFRQLSRRKVLIVLDDVTC--FRQIKSLI----GMLRN----------------CCVKEKYEMKELG 283 (311)
Q Consensus 226 l~~~~~~~~~~~~l~~~L~~kr~LlVLDdV~~--~~~l~~l~----~~~~~----------------~~~~~~y~v~~L~ 283 (311)
+.... ..+++-++|+|+++. ....+.|+ .++.. .... ++++++|+
T Consensus 74 ~~~~p------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~ 140 (305)
T 2gno_A 74 LNYSP------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNV 140 (305)
T ss_dssp HTSCC------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCC
T ss_pred Hhhcc------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCC
Confidence 32111 124566888999974 34455553 11111 1223 89999999
Q ss_pred hHHHHHHHHHhh
Q 042778 284 DDHALELFSRHA 295 (311)
Q Consensus 284 ~~ea~~Lf~~~a 295 (311)
+++..+.+.+.+
T Consensus 141 ~~~i~~~L~~~~ 152 (305)
T 2gno_A 141 PKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988775
No 80
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.22 E-value=0.0046 Score=56.05 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=30.6
Q ss_pred hhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 151 ESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 151 ~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
+...+.+...+..+ .-...+.++|..|+||||+|+.+.+.+..
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 34455555555432 22457899999999999999999998543
No 81
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.10 E-value=0.00052 Score=69.88 Aligned_cols=53 Identities=23% Similarity=0.372 Sum_probs=41.4
Q ss_pred CCCccchhhhHHHHHHhhcc-----------cCCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 144 KNQLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
-++++|.+..+++|.+++.. .-.....|.|+|.+|+||||||++++......|
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~ 266 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 266 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE
Confidence 46789999989888887753 112345799999999999999999998865443
No 82
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.09 E-value=0.0028 Score=53.23 Aligned_cols=33 Identities=12% Similarity=0.011 Sum_probs=25.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
-.++.|+|.+|+||||||..+.. . .-..++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 45899999999999999999887 2 123456666
No 83
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.07 E-value=0.00034 Score=63.67 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=39.0
Q ss_pred CCccchhhhHHHHHHhhccc---CCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 145 NQLVGVESRVEEIESLLGAE---SKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
..++|.+..++.+...+..+ ......+.|+|..|+||||||+.+++.+...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 46788887777777666532 2234679999999999999999999987543
No 84
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.07 E-value=0.00024 Score=62.17 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=39.2
Q ss_pred CCCccchhhhHHHHHHhhcc----------cCCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 144 KNQLVGVESRVEEIESLLGA----------ESKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
..+++|.+..++.+.+++.. +....+-+.|+|.+|+|||+||+++++.....|
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~ 72 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPF 72 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCC
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 46789999888888776542 111123477999999999999999999865443
No 85
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.06 E-value=0.00034 Score=62.20 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=39.5
Q ss_pred CCCccchhhhHHHHHHhhcc------------cCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGA------------ESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~------------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
...++|.+..++.+...+.. .......+.|+|.+|+|||+||+.+++....
T Consensus 14 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35689999999888877753 0122456789999999999999999998743
No 86
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.02 E-value=0.0006 Score=59.58 Aligned_cols=49 Identities=18% Similarity=0.134 Sum_probs=35.3
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
++++|.+..+..+.+.+..-......|.|+|..|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4688999888888876654222234677999999999999999998754
No 87
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.01 E-value=0.00073 Score=61.15 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=21.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-+++.|+|++|+||||||..+...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 356789999999999999999876
No 88
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=96.96 E-value=0.00039 Score=52.90 Aligned_cols=62 Identities=10% Similarity=0.010 Sum_probs=45.7
Q ss_pred CcccEEecCccccCCCChHHHHHHHHHhCCCcEEeeCCCCCCCcchHHHHHHHHhccceeeeeccCcccccchHHHHHHH
Q 042778 17 HKYDVFQSFRGEDNRDNFTGHLYSALSQKGIETFIDDQLNRGDEISQSLVDAIEASAISLIIFSEAYASSRWCLDELVKI 96 (311)
Q Consensus 17 ~~~dvFis~~g~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wcl~El~~i 96 (311)
..|.+||||..+|. .+.|...|.+.|+..- | +.|+.|.+.|++.+++-.+|.||..|+..+
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 57999999999993 3344444445555332 3 557889999999999999999999998544
Q ss_pred H
Q 042778 97 L 97 (311)
Q Consensus 97 ~ 97 (311)
.
T Consensus 64 ~ 64 (111)
T 1eiw_A 64 R 64 (111)
T ss_dssp T
T ss_pred H
Confidence 3
No 89
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.92 E-value=0.00045 Score=56.37 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=23.0
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
.+|.|.|++|+||||+|+.+.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 47899999999999999999987643
No 90
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.87 E-value=0.0011 Score=55.50 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=33.4
Q ss_pred hhhhHHHHHHhhccc-CCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 150 VESRVEEIESLLGAE-SKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 150 r~~~~~~l~~~L~~~-~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
++..++++.+.+... .....+|+|.|..|.|||||++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455667777666532 23468999999999999999999987653
No 91
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.84 E-value=0.0011 Score=55.78 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=30.5
Q ss_pred hHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 153 RVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 153 ~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+++|.+.+........+|+|.|..|.|||||++.+...+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44455555543334578999999999999999999887654
No 92
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.84 E-value=0.00061 Score=55.02 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=22.3
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+|.|.|+.|+||||+|+.+.++..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988764
No 93
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0009 Score=63.00 Aligned_cols=53 Identities=17% Similarity=0.294 Sum_probs=40.7
Q ss_pred CCCccchhhhHHHHHHhhcc-----------cCCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 144 KNQLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
-.++.|.+..+++|.+.+.. +-.-.+-|.++|++|+|||+||+++++.....|
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 35778999988888775532 112356789999999999999999999876544
No 94
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.78 E-value=0.0011 Score=60.91 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=35.8
Q ss_pred CccchhhhHHHHHHhhcc-------------cCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 146 QLVGVESRVEEIESLLGA-------------ESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.++|.+..++.+...+.. .......+.++|.+|+|||++|+++++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 468888888888776620 01124568999999999999999998865
No 95
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.77 E-value=0.00061 Score=54.86 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.1
Q ss_pred EEEEEeccCcchhHHHHHHHHHhh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.+|+|.|++|+||||+|+.+ .+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 543
No 96
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.75 E-value=0.0011 Score=60.86 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=36.8
Q ss_pred cchhhhHHHHHHhhcc--cCCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 148 VGVESRVEEIESLLGA--ESKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 148 vGr~~~~~~l~~~L~~--~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
|+.+..++++.+.|.. ..+....|.|+|+.|.||||+++.++..+...|
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 5556666777766643 234577899999999999999999998865554
No 97
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.72 E-value=0.00081 Score=55.23 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=22.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+.|.|+|+.|+||||+|+.+.++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998764
No 98
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.71 E-value=0.00082 Score=56.18 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+|.|+|+.|+||||+|+.+...+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998763
No 99
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.69 E-value=0.014 Score=53.52 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=34.8
Q ss_pred HHHHHHhhc-ccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 154 VEEIESLLG-AESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 154 ~~~l~~~L~-~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
...|..+|. .+-..-.++.|+|.+|+||||||..+.......=..++|+.
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 345555565 22233579999999999999999999887543323456776
No 100
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.68 E-value=0.00094 Score=59.96 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=38.1
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
+.++|....+.++.+.+..-......|.|+|..|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 468999999999988876433333457799999999999999999864
No 101
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.66 E-value=0.0016 Score=58.69 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=39.0
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
...++|++..+..+...+..+ .-+.++|.+|+|||+||+.+.+.....|
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 357899998888887776543 2588999999999999999999765443
No 102
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.66 E-value=0.011 Score=54.07 Aligned_cols=50 Identities=16% Similarity=0.176 Sum_probs=34.0
Q ss_pred HHHHHHhhc-ccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 154 VEEIESLLG-AESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 154 ~~~l~~~L~-~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
...|..+|. .+-..-.++.|+|.+|+||||||..+.......=..++|+.
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 334555554 22223568999999999999999998876543323567776
No 103
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.63 E-value=0.017 Score=53.23 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=33.8
Q ss_pred HHHHHHhhc-ccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 154 VEEIESLLG-AESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 154 ~~~l~~~L~-~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
...|..+|. .+-..-.++.|+|.+|+||||||..+.......=..++|+.
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 344555554 22122457888999999999999988877543334577887
No 104
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.58 E-value=0.0024 Score=57.03 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=24.8
Q ss_pred CCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 165 SKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 165 ~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.....+|+|.|..|+||||||+.+...+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34578999999999999999998887654
No 105
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.51 E-value=0.0015 Score=53.09 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=20.6
Q ss_pred EEEEEeccCcchhHHHHHHHHH
Q 042778 169 YALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~ 190 (311)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 106
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.50 E-value=0.0014 Score=52.94 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=22.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+|+|.|+.|+||||+|+.+.+++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998754
No 107
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.50 E-value=0.0011 Score=53.67 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.3
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998754
No 108
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.47 E-value=0.0014 Score=53.94 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=21.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|+.|.|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999876
No 109
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.45 E-value=0.0022 Score=53.55 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+|+|.|+.|.|||||++.+....
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999998876
No 110
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.44 E-value=0.0012 Score=54.10 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.+.|.|+|+.|+||||+|+.+.++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998875
No 111
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.42 E-value=0.0018 Score=53.17 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=23.0
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
.+|.|.|+.|+||||+|+.+.+++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998653
No 112
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.41 E-value=0.016 Score=52.80 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=33.1
Q ss_pred HHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc------CcCceEEEe
Q 042778 156 EIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS------NFEGSCFLQ 203 (311)
Q Consensus 156 ~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~------~F~~~~wv~ 203 (311)
.|..+|..+-..-.++.|+|.+|+||||||..+...... .=..++|+.
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 344555433234679999999999999999998876322 123567877
No 113
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.40 E-value=0.0026 Score=58.52 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=37.5
Q ss_pred CCCccchhhhHHHHHHhhc----c------------------------cCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLG----A------------------------ESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~----~------------------------~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
...++|.+..++.|...+. . .......+.++|.+|+|||+||+.+++....
T Consensus 20 ~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 20 DNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred hhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3467899888887776652 0 0112346889999999999999999998743
No 114
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.38 E-value=0.0021 Score=52.93 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=22.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+|.|.|+.|+||||+|+.+.++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998876
No 115
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.38 E-value=0.0017 Score=53.83 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.9
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.|+|.|+.|+||||+|+.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 116
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.35 E-value=0.0037 Score=54.02 Aligned_cols=41 Identities=15% Similarity=0.047 Sum_probs=29.6
Q ss_pred hhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 152 SRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 152 ~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+.++...+.........|+|.|+.|+||||+|+.+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444444333333457789999999999999999998765
No 117
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.35 E-value=0.0014 Score=53.66 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.9
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+|.|.|+.|+||||+|+.+..+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999988753
No 118
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.34 E-value=0.0022 Score=53.58 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=24.2
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...+|+|.|+.|.||||||+.+...+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998865
No 119
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.33 E-value=0.0038 Score=60.60 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=38.5
Q ss_pred CCCccchhhhHHHHHHhhcc----cCCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 144 KNQLVGVESRVEEIESLLGA----ESKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
..+.+|.+.....+.+.+.. .......+.|+|.+|+||||||+.++......|
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 34578888777776554432 112356899999999999999999999875443
No 120
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.32 E-value=0.0017 Score=53.18 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=22.7
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+|.|.|+.|+||||+|+.+.++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998765
No 121
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.32 E-value=0.0017 Score=54.12 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=22.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+|+|.|+.|.||||||+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998875
No 122
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.32 E-value=0.0023 Score=55.82 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=22.2
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+|.|+|+.|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988753
No 123
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.31 E-value=0.0018 Score=52.67 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.7
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.|.|.|+.|.||||+|+.+..+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998754
No 124
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.31 E-value=0.0018 Score=53.19 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999988654
No 125
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.31 E-value=0.0024 Score=51.91 Aligned_cols=25 Identities=12% Similarity=0.333 Sum_probs=22.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-.+++|+|+.|.||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 126
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.28 E-value=0.0037 Score=51.34 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=23.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+|.|.|+.|.||||+++.+......
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999999987643
No 127
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.27 E-value=0.0017 Score=53.02 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=18.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+|.|.|+.|+||||+|+.+.+++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999988754
No 128
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.26 E-value=0.003 Score=52.61 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=23.8
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
....+|+|.|+.|+||||+|+.+.++.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346799999999999999999998875
No 129
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.25 E-value=0.0027 Score=52.63 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=23.3
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
+...+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34789999999999999999999875
No 130
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.23 E-value=0.0028 Score=55.01 Aligned_cols=28 Identities=11% Similarity=0.322 Sum_probs=24.0
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
....+|+|.|+.|.||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467999999999999999999988754
No 131
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.22 E-value=0.0024 Score=52.64 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=22.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|+|+|+.|+||||+|+.+.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999887
No 132
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.22 E-value=0.0028 Score=52.06 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=22.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998865
No 133
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.21 E-value=0.0027 Score=51.99 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=22.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
...|+|.|+.|+||||+|+.+.++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998875
No 134
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.20 E-value=0.0028 Score=50.94 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=21.6
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.|+|.|+.|+||||+|+.+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988753
No 135
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.20 E-value=0.0019 Score=52.18 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.1
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+|.|.|+.|+||||+|+.+.++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998753
No 136
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.19 E-value=0.0028 Score=52.16 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.7
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.+++|.|+.|.|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999863
No 137
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.19 E-value=0.0037 Score=49.93 Aligned_cols=37 Identities=11% Similarity=0.280 Sum_probs=27.4
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
.-..++|+|..|.|||||++.++......=...+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 3458999999999999999999997644201145554
No 138
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.18 E-value=0.0023 Score=52.75 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=22.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+|.|.|+.|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 139
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.17 E-value=0.0066 Score=57.63 Aligned_cols=34 Identities=21% Similarity=0.492 Sum_probs=26.1
Q ss_pred EEEEeccCcchhHHHHHHHHHhhccCc-CceEEEe
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISSNF-EGSCFLQ 203 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~~F-~~~~wv~ 203 (311)
.++|+|..|+|||||+..+......++ +.++++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~ 187 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAG 187 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEee
Confidence 589999999999999999988765544 3344443
No 140
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.17 E-value=0.0051 Score=51.19 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=24.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
..+|.|.|+.|+||||+|+.+.+++...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3589999999999999999999986543
No 141
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.14 E-value=0.0026 Score=52.52 Aligned_cols=28 Identities=21% Similarity=0.460 Sum_probs=23.9
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
++++|.|+.|.|||||++.+.......|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 4789999999999999999998765444
No 142
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.14 E-value=0.0025 Score=52.66 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=23.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+|+|.|+.|+||||+|+.+.++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998763
No 143
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.13 E-value=0.0028 Score=52.85 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=20.2
Q ss_pred EEEEEeccCcchhHHHHHHHHH
Q 042778 169 YALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~ 190 (311)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 144
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.13 E-value=0.0018 Score=60.00 Aligned_cols=27 Identities=15% Similarity=-0.064 Sum_probs=23.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
-..++|+|..|+|||||++.+.+.+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 358899999999999999999887544
No 145
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.12 E-value=0.0034 Score=52.53 Aligned_cols=26 Identities=23% Similarity=0.538 Sum_probs=22.9
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
...+|+|+|+.|.||||||+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999988754
No 146
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.11 E-value=0.054 Score=51.02 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=23.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+|.++|.+|+||||++..++..+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998876443
No 147
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.10 E-value=0.013 Score=55.76 Aligned_cols=88 Identities=16% Similarity=0.198 Sum_probs=55.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc-CcCceEEEecCccccCCCCChHHHHHHHHHHHhcC-------CC-----CCC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS-NFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQD-------GI-----VIP 234 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~-~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~-------~~-----~~~ 234 (311)
-..++|.|-.|+|||+|+..+.+.+.. +-+.++|+- +.++.....++.+.+...-... .. ..+
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~----iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d 240 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG----VGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMN 240 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE----ESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTT
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE----cccCcHHHHHHHHhhhcccccccccccccceEEEEeCCC
Confidence 346899999999999999999988643 446667775 4443445666666665431111 00 111
Q ss_pred C--------H---HHHHHHhC---CCeEEEEEecCCChH
Q 042778 235 D--------I---ALSFRQLS---RRKVLIVLDDVTCFR 259 (311)
Q Consensus 235 ~--------~---~~l~~~L~---~kr~LlVLDdV~~~~ 259 (311)
+ . -.+.++++ ++.+||++||+....
T Consensus 241 ~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~A 279 (498)
T 1fx0_B 241 EPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFV 279 (498)
T ss_dssp SCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHH
Confidence 1 0 23445554 589999999996543
No 148
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.09 E-value=0.0032 Score=56.88 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=33.5
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+++|.+..+..+...+.... ..-+.|+|.+|+|||+||+.+++...
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred chhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 3468898875554433332111 22388999999999999999999754
No 149
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.09 E-value=0.0035 Score=51.38 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=23.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+|+|.|+.|+||||+|+.+.++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988753
No 150
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.07 E-value=0.0032 Score=53.26 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.4
Q ss_pred EEEEEeccCcchhHHHHHHHHHhh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.+|+|.|+.|+||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999987753
No 151
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.07 E-value=0.0025 Score=53.42 Aligned_cols=26 Identities=15% Similarity=0.441 Sum_probs=23.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.++|.|+|+.|+|||||++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56899999999999999999988763
No 152
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.05 E-value=0.0036 Score=52.09 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=23.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+|.|.|+.|+||||+|+.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988753
No 153
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.04 E-value=0.0023 Score=53.24 Aligned_cols=29 Identities=21% Similarity=0.435 Sum_probs=24.2
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCcC
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNFE 197 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F~ 197 (311)
|.|.|+|+.|+|||||++.+..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 45789999999999999999887655553
No 154
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.03 E-value=0.0034 Score=52.19 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-.+++|.|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998764
No 155
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.03 E-value=0.0034 Score=52.41 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEEEeccCcchhHHHHHHHHH
Q 042778 169 YALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~ 190 (311)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 156
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.03 E-value=0.0035 Score=52.72 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=23.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+++|+|+.|+|||||++.+......
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 568999999999999999999987654
No 157
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.02 E-value=0.0037 Score=51.32 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.9
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
+|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 158
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.01 E-value=0.0035 Score=52.09 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+++|+|+.|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998875
No 159
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.98 E-value=0.0053 Score=57.98 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=38.7
Q ss_pred CCCccchhhhHHHHHHhhccc------------CCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 144 KNQLVGVESRVEEIESLLGAE------------SKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
...++|.+..++.+...+... ....+-|.++|++|+||||+|++++......|
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 356889888887776655211 01245688999999999999999999865544
No 160
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.98 E-value=0.0036 Score=52.96 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=22.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...|.|.|+.|+||||+|+.+.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999988763
No 161
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.97 E-value=0.0052 Score=51.35 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=24.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
..+|+|.|+.|+||||+|+.+.+++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999886543
No 162
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.97 E-value=0.0041 Score=54.32 Aligned_cols=25 Identities=12% Similarity=0.403 Sum_probs=22.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+|.|.|++|+||||+|+.+...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 163
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.95 E-value=0.0074 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=23.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+|.|.|++|.||||+|+.+.....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999988764
No 164
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.94 E-value=0.0045 Score=51.69 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.2
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 36799999999999999999998763
No 165
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.94 E-value=0.007 Score=53.77 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.2
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998865
No 166
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.93 E-value=0.0045 Score=51.81 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.5
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...+|+|.|..|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999888654
No 167
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.91 E-value=0.0064 Score=49.76 Aligned_cols=29 Identities=10% Similarity=0.081 Sum_probs=24.5
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
..++++|.|..|.|||||+..+...+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 36789999999999999999999876543
No 168
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.91 E-value=0.0034 Score=51.15 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.4
Q ss_pred eEEEEEeccCcchhHHHHHHHH
Q 042778 168 VYALGIWGIGGIDRTTIARAIF 189 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~ 189 (311)
-.+++|+|..|.|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999644
No 169
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.89 E-value=0.019 Score=54.53 Aligned_cols=88 Identities=15% Similarity=0.236 Sum_probs=53.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc-CcCceEEEecCccccCCCCChHHHHHHHHHHHhcC------CC-----CCCC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS-NFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQD------GI-----VIPD 235 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~-~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~------~~-----~~~~ 235 (311)
-..++|.|-.|+|||+|+..+.+.+.. +-+.++++- +.++.....++.+.+...-... .. ..+.
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~----iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~ 228 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG----VGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNE 228 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE----ESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTS
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE----CCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCC
Confidence 347899999999999999999887643 335566655 4332344566666665432111 10 1111
Q ss_pred --H---------HHHHHHh---CCCeEEEEEecCCChH
Q 042778 236 --I---------ALSFRQL---SRRKVLIVLDDVTCFR 259 (311)
Q Consensus 236 --~---------~~l~~~L---~~kr~LlVLDdV~~~~ 259 (311)
. -.+-+++ +++.+||++||+....
T Consensus 229 p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~A 266 (482)
T 2ck3_D 229 PPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFT 266 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHH
Confidence 0 2222333 4699999999996543
No 170
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.88 E-value=0.0044 Score=53.45 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+|+|+|+.|.|||||++.+.+++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999764
No 171
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.87 E-value=0.0046 Score=55.79 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=23.8
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
++.++|+|.|=||+||||.|..+.--+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~ 74 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI 74 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH
Confidence 35899999999999999999887775433
No 172
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.87 E-value=0.0053 Score=58.95 Aligned_cols=45 Identities=16% Similarity=0.061 Sum_probs=36.7
Q ss_pred CCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 145 NQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..++|.+..++.+...+..+ .-|.|+|.+|+|||+||+++++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 46889998888777766543 3688999999999999999998763
No 173
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.87 E-value=0.0039 Score=52.06 Aligned_cols=27 Identities=7% Similarity=0.104 Sum_probs=23.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+|+|.|+.|+||||+|+.+.+++..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987544
No 174
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.86 E-value=0.0043 Score=53.92 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=22.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+|+|.|+.|.|||||++.+.+++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998654
No 175
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.81 E-value=0.0047 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.3
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.++|+|..|+|||||++.+...+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988653
No 176
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.77 E-value=0.0034 Score=52.58 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=21.6
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
+|+|.|..|+||||+|+.+...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988753
No 177
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.74 E-value=0.0039 Score=54.41 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=22.3
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..|+|+|+.|.||||+++.+...+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998654
No 178
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.74 E-value=0.0057 Score=50.37 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.8
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.|+|.|+.|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998763
No 179
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.73 E-value=0.006 Score=50.68 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.8
Q ss_pred EEEEeccCcchhHHHHHHHHHhhc
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
+|+|.|+.|+||||+|+.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988653
No 180
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.72 E-value=0.0051 Score=52.33 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
...|.|.|+.|+||||+|+.+.++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998875
No 181
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.72 E-value=0.0057 Score=51.37 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.7
Q ss_pred EEEEeccCcchhHHHHHHHHHhh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.|+|.|+.|+||||+|+.+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 182
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.72 E-value=0.02 Score=52.39 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=29.1
Q ss_pred HHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 154 VEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 154 ~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..++...+........+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 334444444344568899999999999999999987654
No 183
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.69 E-value=0.0067 Score=49.42 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-.+|+|.|+.|.||||+++.+...+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998875
No 184
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.67 E-value=0.0056 Score=50.76 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=22.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
...|+|.|+.|+||||+++.+.+++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999876
No 185
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.66 E-value=0.01 Score=53.60 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=24.1
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
....+|||.|..|+||||||+.+...+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3477999999999999999999877654
No 186
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.65 E-value=0.014 Score=49.08 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=27.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc------CcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS------NFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~------~F~~~~wv~ 203 (311)
-.+++|+|..|+|||||++.+...... .-...+|+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 569999999999999999999874322 123466766
No 187
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.65 E-value=0.0063 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.6
Q ss_pred EEEEeccCcchhHHHHHHHHHhh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.|+|.|+.|+||||+|+.+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998765
No 188
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.65 E-value=0.018 Score=51.96 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=24.2
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
...+++|+|.+|+||||++..++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3679999999999999999998886544
No 189
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.63 E-value=0.0071 Score=50.82 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=23.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+|.|.|+.|.||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999999988754
No 190
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.62 E-value=0.018 Score=52.14 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=24.1
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
...+++|+|..|+||||+++.+...+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999998876443
No 191
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.61 E-value=0.04 Score=51.85 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=23.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+|.++|.+|+||||++..++..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999887643
No 192
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.58 E-value=0.011 Score=58.14 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=39.4
Q ss_pred CCCccchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 144 KNQLVGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
...++|.+..++.+...+..+ ..+.|+|..|+||||||+.++.......
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred cceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 346789988888777777643 4789999999999999999999765544
No 193
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.57 E-value=0.0082 Score=56.67 Aligned_cols=85 Identities=16% Similarity=0.190 Sum_probs=50.4
Q ss_pred EEEEeccCcchhHHHHHHHHHhhccCcC----ceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H--
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISSNFE----GSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I-- 236 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~~F~----~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~-- 236 (311)
.++|.|-.|+|||+|+..+.+....+-+ .++++- +.++......+.+.+...-..... ..++ .
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~----iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAA----IGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEE----EEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEE----ecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 4789999999999999999988654333 344544 333234455566655442111000 0111 1
Q ss_pred -------HHHHHHhC---CCeEEEEEecCCCh
Q 042778 237 -------ALSFRQLS---RRKVLIVLDDVTCF 258 (311)
Q Consensus 237 -------~~l~~~L~---~kr~LlVLDdV~~~ 258 (311)
-.+.++++ ++.+||++||+...
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~ 260 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMTNY 260 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 23444443 68999999998643
No 194
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.56 E-value=0.0069 Score=50.84 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
.++++|+|+.|+|||||++.+......
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCc
Confidence 568999999999999999999987543
No 195
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.55 E-value=0.033 Score=49.98 Aligned_cols=36 Identities=14% Similarity=-0.025 Sum_probs=27.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
-.++.|.|.+|+||||||..++.....+-..++|+.
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 458899999999999999998876443325566665
No 196
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.54 E-value=0.0054 Score=51.24 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=21.4
Q ss_pred EEEEEeccCcchhHHHHHHHHHhh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
++++|+|+.|.|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999988754
No 197
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.53 E-value=0.028 Score=47.64 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=32.3
Q ss_pred HHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc------CcCceEEEe
Q 042778 156 EIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS------NFEGSCFLQ 203 (311)
Q Consensus 156 ~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~------~F~~~~wv~ 203 (311)
.|..+|..+-..-.+++|+|.+|+|||||+..+...... .-..++|+.
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 344555322223458999999999999999998885322 124567776
No 198
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.53 E-value=0.022 Score=51.10 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=24.9
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
...+++|+|.+|+||||++..++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 36799999999999999999998876543
No 199
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.53 E-value=0.0078 Score=53.24 Aligned_cols=24 Identities=33% Similarity=0.709 Sum_probs=21.7
Q ss_pred CeEEEEEeccCcchhHHHHHHHHH
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~ 190 (311)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999883
No 200
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.51 E-value=0.0063 Score=51.49 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=22.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...|.|.|+.|+||||+|+.+.+++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 201
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.51 E-value=0.007 Score=50.73 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=22.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-.+++|+|..|.|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4589999999999999999988764
No 202
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.51 E-value=0.0079 Score=50.66 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHH
Q 042778 168 VYALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~ 190 (311)
..+|+|.|+.|.||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 203
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.49 E-value=0.018 Score=58.15 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=39.7
Q ss_pred CCCccchhhhHHHHHHhhcccC------C-CeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 144 KNQLVGVESRVEEIESLLGAES------K-DVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~------~-~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
...++|.+..++.+...+.... + ....+.++|.+|+|||+||+++++....
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~ 547 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG 547 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4678999998888887775321 1 1347999999999999999999998633
No 204
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.46 E-value=0.0092 Score=51.44 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=22.9
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
...+|||.|..|.|||||++.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999988754
No 205
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.46 E-value=0.042 Score=51.33 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=23.3
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
...+|.|+|++|.||||+|+.+..+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998765
No 206
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.45 E-value=0.0086 Score=53.93 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=24.1
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
....+|+|.|..|.|||||++.+..-+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3467999999999999999999887644
No 207
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.43 E-value=0.014 Score=49.13 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=28.0
Q ss_pred hHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 153 RVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 153 ~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+.+..++. ......|.|+|.+|+|||||+..+....
T Consensus 25 ~a~~~r~~~~--~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 25 LADKNRKLLN--KHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHH--HTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3444444443 2347889999999999999999988764
No 208
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.42 E-value=0.014 Score=49.24 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=29.8
Q ss_pred hHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 153 RVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 153 ~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
-+..+..++..- .....+.|+|++|.||||+|.++++.+..
T Consensus 44 f~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 44 FLGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 355566666532 22346899999999999999999998643
No 209
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.42 E-value=0.018 Score=48.20 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=32.1
Q ss_pred chhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 149 GVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 149 Gr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
+.+.....+...+.. ...++|.|+|.+|+|||||+..+.......
T Consensus 13 ~~~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 13 ENKRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred hcHHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 334455555555432 347899999999999999999988775433
No 210
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.40 E-value=0.0095 Score=53.20 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=23.5
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...+++|+|.+|+||||++..++....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999999887654
No 211
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.36 E-value=0.024 Score=50.61 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+++++|.+|+||||++..++.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999998876543
No 212
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.35 E-value=0.0084 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=21.8
Q ss_pred EEEEEeccCcchhHHHHHHHHHhh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..|.|.|+.|+||||+|+.+.+++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998876
No 213
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.31 E-value=0.01 Score=54.05 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=22.7
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+|+|.|+.|+||||||+.++.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 214
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.28 E-value=0.014 Score=49.11 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=26.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
-.+++|.|.+|+|||||++.+.......=..+.|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 358999999999999999999876433222345554
No 215
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.28 E-value=0.0094 Score=50.94 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=22.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...|.|.|+.|+||||+|+.+.+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 216
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.27 E-value=0.0096 Score=51.32 Aligned_cols=26 Identities=12% Similarity=0.368 Sum_probs=22.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+|.|.|+.|.||||+|+.+..++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987753
No 217
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.26 E-value=0.012 Score=50.07 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=24.2
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
...++|.|.|++|+||||.|+.+.+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999998875
No 218
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.25 E-value=0.0036 Score=57.47 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=23.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
-.+++|.|..|.|||||.+.+...+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 349999999999999999998876543
No 219
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.25 E-value=0.011 Score=49.83 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=20.9
Q ss_pred EEEEeccCcchhHHHHHHHHHhh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.|.|.|+.|+||||+|+.+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 220
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.24 E-value=0.016 Score=51.96 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=24.0
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
...+++|+|.+|+|||||++.++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3579999999999999999999876543
No 221
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.23 E-value=0.098 Score=47.13 Aligned_cols=34 Identities=9% Similarity=0.094 Sum_probs=26.9
Q ss_pred EEEEeccCcchhHHHHHHHHHhhccCc--CceEEEe
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISSNF--EGSCFLQ 203 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~~F--~~~~wv~ 203 (311)
++-|+|.+|+||||||..+.......+ ..++|++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 789999999999999998877654432 3467887
No 222
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.23 E-value=0.018 Score=46.34 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.2
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.-.+++|.|..|.|||||.+.+..-+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999998865
No 223
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.23 E-value=0.0084 Score=50.88 Aligned_cols=25 Identities=28% Similarity=0.644 Sum_probs=22.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-.+++|+|..|.|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4589999999999999999988755
No 224
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.23 E-value=0.0097 Score=50.85 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|.|..|.|||||++.+...
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 458999999999999999988743
No 225
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.21 E-value=0.011 Score=50.29 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=21.0
Q ss_pred EEEEeccCcchhHHHHHHHHHhh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.|.|.|+.|+||||+|+.+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 226
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.17 E-value=0.019 Score=53.12 Aligned_cols=37 Identities=14% Similarity=-0.019 Sum_probs=27.2
Q ss_pred HHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 156 EIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 156 ~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.+.+-+...-....+++|+|+.|.|||||++.+....
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3333333333445699999999999999999999764
No 227
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.15 E-value=0.018 Score=54.18 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=24.3
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..++|.|+|.||+||||++..++..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999877544
No 228
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.14 E-value=0.0086 Score=49.01 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.5
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
.+++|+|..|.|||||++.+..-+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999998876543
No 229
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.13 E-value=0.01 Score=53.60 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=22.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.++|.|+|+.|+||||||+.++.+..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999998753
No 230
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.12 E-value=0.012 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=21.0
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.+|.|.|++|.||||+|+.+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 231
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.11 E-value=0.061 Score=49.83 Aligned_cols=37 Identities=22% Similarity=0.087 Sum_probs=26.9
Q ss_pred HHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 157 IESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 157 l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
+++.|..- ..-..++|+|..|+|||+|++.+.+.+..
T Consensus 165 aID~l~Pi-grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 165 LIDLFAPI-GKGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp HHHHHSCC-BTTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred hhhhcccc-cCCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 44555431 12347899999999999999999987553
No 232
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.11 E-value=0.016 Score=50.71 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=26.8
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEE
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFL 202 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv 202 (311)
.-.+++|+|..|.|||||.+.+...+...+.+.+.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~ 59 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 59 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE
Confidence 356899999999999999999887654333344433
No 233
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.09 E-value=0.014 Score=58.87 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=39.1
Q ss_pred CCCccchhhhHHHHHHhhcccC------C-CeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 144 KNQLVGVESRVEEIESLLGAES------K-DVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~------~-~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...++|.+..++.+...+.... + ....+.++|.+|+|||+||+.+++...
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 4678999988888877664321 1 245789999999999999999999873
No 234
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.08 E-value=0.017 Score=49.07 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=26.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
-.++.|.|.+|+||||||..+.......=..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 458999999999999999888766433323456665
No 235
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.07 E-value=0.0075 Score=53.68 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=20.2
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...+|+|.|..|.||||+|+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999887643
No 236
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.04 E-value=0.033 Score=51.00 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=34.2
Q ss_pred HHHHHHhhc-ccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 154 VEEIESLLG-AESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 154 ~~~l~~~L~-~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
...|..+|. .+-..-+++.|.|.+|+||||||..+.......=..++|+.
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 344555554 22223458999999999999999998877543333567877
No 237
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.02 E-value=0.011 Score=53.82 Aligned_cols=26 Identities=12% Similarity=0.201 Sum_probs=23.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.++|.|+|+.|+||||||..+++++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999999754
No 238
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.02 E-value=0.014 Score=52.20 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.2
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
....+|||.|..|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999999887654
No 239
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.02 E-value=0.011 Score=49.26 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.7
Q ss_pred EEEEeccCcchhHHHHHHHHHhh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
+++|+|..|+|||||.+.+....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999988754
No 240
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.01 E-value=0.013 Score=50.07 Aligned_cols=26 Identities=19% Similarity=0.297 Sum_probs=22.9
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
...+|+|.|+.|.||||+++.+..++
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998754
No 241
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.00 E-value=0.0084 Score=51.09 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=16.3
Q ss_pred eEEEEEeccCcchhHHHHHHHH-Hhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIF-NKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~-~~~ 192 (311)
-.+++|+|..|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999999999999998 543
No 242
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.98 E-value=0.012 Score=50.06 Aligned_cols=26 Identities=8% Similarity=0.116 Sum_probs=23.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999988765
No 243
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.94 E-value=0.023 Score=50.87 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=23.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+++|+|..|+|||||++.++..+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999887654
No 244
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.82 E-value=0.039 Score=52.73 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=27.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
..+++|+|..|+|||||++.+...+... .+.+++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 5799999999999999999998865433 3444443
No 245
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.82 E-value=0.015 Score=47.65 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=23.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.++++|.|..|+|||||+..+...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999988754
No 246
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.79 E-value=0.016 Score=54.84 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=50.3
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCc----CceEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H-
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNF----EGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I- 236 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F----~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~- 236 (311)
..++|.|-.|+|||+|+..+++....+- +.++++- +.++......+.+.+...-..... ..++ .
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~----iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~ 228 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAA----MGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVE 228 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEE----EEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEE----ccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHH
Confidence 4578889999999999999998754321 2344544 333233456666666543111110 1111 0
Q ss_pred --------HHHHHHhC---CCeEEEEEecCCCh
Q 042778 237 --------ALSFRQLS---RRKVLIVLDDVTCF 258 (311)
Q Consensus 237 --------~~l~~~L~---~kr~LlVLDdV~~~ 258 (311)
-.+.++++ ++.+||++||+...
T Consensus 229 r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~ 261 (469)
T 2c61_A 229 RIVTPRMALTAAEYLAYEHGMHVLVILTDITNY 261 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 23444444 69999999997543
No 247
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.78 E-value=0.013 Score=49.49 Aligned_cols=23 Identities=22% Similarity=0.034 Sum_probs=20.4
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.+++|+|..|.|||||.+.+.--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999988764
No 248
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.78 E-value=0.039 Score=47.14 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=24.7
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
.-..|.|.|+.|+||||+++.+.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3568999999999999999999998754
No 249
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.77 E-value=0.056 Score=48.61 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=53.3
Q ss_pred HHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccC------cCceEEEecCccccCCCCChHHHHHHHHHHHhcC
Q 042778 156 EIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSN------FEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQD 229 (311)
Q Consensus 156 ~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~------F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~ 229 (311)
.|..+|..+-..-.++.|+|.+|+||||||..+....... =..++|+. ... .++...+.. ++..+...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~----~e~-~~~~~~l~~-~~~~~g~~ 168 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID----TEG-TFRWERIEN-MAKALGLD 168 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE----SSS-CCCHHHHHH-HHHHTTCC
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE----CCC-CCCHHHHHH-HHHHhCCC
Confidence 3444553221224589999999999999999988764322 23567877 222 334444443 23333211
Q ss_pred C-----C----CCCCH-------HHHHHHhC--CCeEEEEEecCCC
Q 042778 230 G-----I----VIPDI-------ALSFRQLS--RRKVLIVLDDVTC 257 (311)
Q Consensus 230 ~-----~----~~~~~-------~~l~~~L~--~kr~LlVLDdV~~ 257 (311)
. . ...+. ..+...+. .+--+||+|.+..
T Consensus 169 ~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 169 IDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 0 0 11121 34444443 4566999999864
No 250
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.75 E-value=0.016 Score=50.12 Aligned_cols=25 Identities=12% Similarity=0.041 Sum_probs=22.2
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.. .+++|+|..|.|||||.+.+.--
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 78999999999999999998864
No 251
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.72 E-value=0.024 Score=50.11 Aligned_cols=36 Identities=8% Similarity=0.016 Sum_probs=27.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcC-ceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFE-GSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~-~~~wv~ 203 (311)
-.+++|.|.+|+|||||++.++..+...-. .++|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 458999999999999999998887554322 344554
No 252
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.71 E-value=0.015 Score=49.97 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||.+.+.--
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 458999999999999999998763
No 253
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.70 E-value=0.013 Score=50.00 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||.+.+.--
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999998764
No 254
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.69 E-value=0.033 Score=47.97 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=23.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..++.+.|.||+|||||+..+.....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987654
No 255
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.68 E-value=0.02 Score=53.89 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.++|.|+|.+|+||||++..+.....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999888644
No 256
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.66 E-value=0.029 Score=49.96 Aligned_cols=28 Identities=21% Similarity=0.138 Sum_probs=23.8
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
...+++|+|.+|+||||++..++.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999998876543
No 257
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.65 E-value=0.013 Score=59.59 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=40.5
Q ss_pred CCCccchhhhHHHHHHhhccc-----------CCCeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 144 KNQLVGVESRVEEIESLLGAE-----------SKDVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
-.+++|.+...+.|.+.+... -.....+.++|.+|+||||||+++++.....|
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 567889998888888776421 01245688999999999999999999875544
No 258
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.63 E-value=0.033 Score=48.30 Aligned_cols=27 Identities=22% Similarity=0.495 Sum_probs=22.8
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
++|+|.|-||+||||+|..++..+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC
Confidence 578889999999999999998876543
No 259
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.59 E-value=0.078 Score=44.17 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=26.1
Q ss_pred EEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
.|.|=|.-|+||||.++.+++.+...-..+.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4778899999999999999998765543444444
No 260
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.58 E-value=0.031 Score=51.32 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=23.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+++|+|..|+|||||++.++..+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 57999999999999999999988654
No 261
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.56 E-value=0.019 Score=49.91 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=21.0
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.+++|+|..|.|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998874
No 262
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.54 E-value=0.019 Score=49.85 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.9
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
.+++|+|..|.|||||.+.+.--+.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4899999999999999999877544
No 263
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.53 E-value=0.016 Score=49.95 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=21.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-.+++|+|..|.|||||.+.+..-+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999987753
No 264
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.52 E-value=0.034 Score=49.41 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=24.2
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..++|+|+|-||+||||+|..++..+..
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~ 67 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSI 67 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHH
Confidence 4789999999999999999998887544
No 265
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.52 E-value=0.054 Score=49.18 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=24.2
Q ss_pred cCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 164 ESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 164 ~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
......+|+|+|.+|.|||||+..+....
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 33557899999999999999999987653
No 266
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.49 E-value=0.022 Score=51.21 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=22.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.++|.|.|+.|+||||||..++.+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3588999999999999999999874
No 267
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.48 E-value=0.016 Score=50.68 Aligned_cols=24 Identities=25% Similarity=0.237 Sum_probs=21.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||.+.+.--
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998764
No 268
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.48 E-value=0.086 Score=47.90 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=34.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHH
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSK 225 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~ 225 (311)
-.++.|.|.+|+||||||..++.....+=..++|+. . .-....+...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS----l---Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS----L---EMSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE----S---SSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe----C---CCCHHHHHHHHHHH
Confidence 458889999999999999998887544223345554 1 33455566665443
No 269
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.47 E-value=0.027 Score=53.08 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=21.4
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..++|.|-.|+|||+|+..+.+...
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CEEEEecCCCCCchHHHHHHHHHHH
Confidence 3578899999999999999988754
No 270
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.46 E-value=0.024 Score=44.44 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=20.4
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
+.|.|+|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 271
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.44 E-value=0.02 Score=50.23 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||.+.++--
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998874
No 272
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.44 E-value=0.055 Score=51.58 Aligned_cols=84 Identities=17% Similarity=0.117 Sum_probs=47.5
Q ss_pred EEEEEeccCcchhHHHH-HHHHHhhccCcCc-eEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC-H----
Q 042778 169 YALGIWGIGGIDRTTIA-RAIFNKISSNFEG-SCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD-I---- 236 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA-~~v~~~~~~~F~~-~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~-~---- 236 (311)
..++|.|-.|+|||+|| ..+.++. +-+. ++++- +.++......+.+.+...-..... ..++ .
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~~--~~dv~~V~~~----IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQR--DSGIKCIYVA----IGQKASTISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTTS--SSSCEEEEEE----ESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhhc--cCCceEEEEE----ecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 46789999999999997 5677753 2343 34554 333234455566654432111111 1111 0
Q ss_pred ------HHHHHHh--CCCeEEEEEecCCCh
Q 042778 237 ------ALSFRQL--SRRKVLIVLDDVTCF 258 (311)
Q Consensus 237 ------~~l~~~L--~~kr~LlVLDdV~~~ 258 (311)
..+-+++ +++.+||++||+...
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 1222232 579999999998653
No 273
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.44 E-value=0.034 Score=53.38 Aligned_cols=46 Identities=9% Similarity=0.090 Sum_probs=31.4
Q ss_pred chhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 149 GVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 149 Gr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
.+.+..+.+.+..........+|.+.|+.|.||||+|+++.+++..
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3333344444433222233578999999999999999999999753
No 274
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.43 E-value=0.056 Score=45.17 Aligned_cols=121 Identities=15% Similarity=0.133 Sum_probs=61.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh-ccCcCceEEEecCccccCCCCChHHHHHHHHHHHh--cCCCCCC--C-------
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI-SSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLL--QDGIVIP--D------- 235 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~-~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~--~~~~~~~--~------- 235 (311)
-..|-|++-.|-||||+|-.+.-+. ...+. ++++.-+.. .. ..+...+...+--.+. +...... +
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~r-V~~vQF~Kg-~~-~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKN-VGVVQFIKG-TW-PNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCC-EEEEESSCC-SS-CCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCe-EEEEEeeCC-CC-CccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 3456666666799999999988873 33343 334431111 01 2333344333300000 0000000 0
Q ss_pred ----HHHHHHHhCCCeE-EEEEecCCChHHHHHhhccCCCcCCceEEEcCCCChHHHHHHHHHhhcC------CCCCCCc
Q 042778 236 ----IALSFRQLSRRKV-LIVLDDVTCFRQIKSLIGMLRNCCVKEKYEMKELGDDHALELFSRHAFK------QNNPHIG 304 (311)
Q Consensus 236 ----~~~l~~~L~~kr~-LlVLDdV~~~~~l~~l~~~~~~~~~~~~y~v~~L~~~ea~~Lf~~~af~------~~~~~~~ 304 (311)
...+++.+.+.+| |||||++... ....-|+.++-++++..+.-. .+.+++.
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~a------------------l~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~ 166 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYM------------------VAYDYLPLEEVISALNARPGHQTVIITGRGCHRD 166 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHH------------------HHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCcc------------------ccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHH
Confidence 0667777777776 9999987321 123445566666666554332 2345555
Q ss_pred HHHhh
Q 042778 305 FEELS 309 (311)
Q Consensus 305 ~~~l~ 309 (311)
+.+++
T Consensus 167 l~e~A 171 (196)
T 1g5t_A 167 ILDLA 171 (196)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 55543
No 275
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.43 E-value=0.017 Score=49.80 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||.+.++--
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999998763
No 276
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.42 E-value=0.017 Score=50.34 Aligned_cols=24 Identities=21% Similarity=0.111 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||.+.+.--
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998764
No 277
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.41 E-value=0.02 Score=50.62 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.6
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.+++|+|..|.|||||.+.+.--
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999998763
No 278
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.41 E-value=0.018 Score=48.32 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=21.2
Q ss_pred EEEEEeccCcchhHHHHHHHHHhh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999988764
No 279
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.40 E-value=0.024 Score=47.78 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.7
Q ss_pred EEEEeccCcchhHHHHHHHHHhh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
+|.|.|++|+||+|+|+.+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999998875
No 280
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.39 E-value=0.045 Score=52.20 Aligned_cols=84 Identities=18% Similarity=0.107 Sum_probs=47.6
Q ss_pred EEEEEeccCcchhHHHH-HHHHHhhccCcCce-EEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H---
Q 042778 169 YALGIWGIGGIDRTTIA-RAIFNKISSNFEGS-CFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I--- 236 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA-~~v~~~~~~~F~~~-~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~--- 236 (311)
..++|.|-.|+|||+|| ..+.+... -+.. +++- +.++......+.+.+...-..... ..++ .
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~----iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQKG--QDVICIYVA----IGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGGS--CSEEEEEEE----ESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhhc--CCcEEEEEE----CCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 46799999999999996 47777653 3433 4444 333233455555555432111111 1111 0
Q ss_pred ------HHHHHHh--CCCeEEEEEecCCCh
Q 042778 237 ------ALSFRQL--SRRKVLIVLDDVTCF 258 (311)
Q Consensus 237 ------~~l~~~L--~~kr~LlVLDdV~~~ 258 (311)
-.+-+++ .++.+||++||+...
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDLSKQ 266 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 1233333 479999999998654
No 281
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.39 E-value=0.026 Score=48.32 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=23.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...|.|.|+.|+||||+++.+.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998764
No 282
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.38 E-value=0.023 Score=46.70 Aligned_cols=24 Identities=8% Similarity=0.340 Sum_probs=21.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 568999999999999999998875
No 283
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=94.37 E-value=0.08 Score=43.39 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhCCCcEEeeC-CCC----C----CCcchHHHHHHHHhccceeeeeccCcccccchHHHHHHHH
Q 042778 34 FTGHLYSALSQKGIETFIDD-QLN----R----GDEISQSLVDAIEASAISLIIFSEAYASSRWCLDELVKIL 97 (311)
Q Consensus 34 f~~~L~~~L~~~gi~~f~d~-~~~----~----G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wcl~El~~i~ 97 (311)
....|..--....+..|.|. ++. - -..|.+.|.+.|..|+..|+++|++...|.|-..|+..++
T Consensus 33 yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai 105 (189)
T 3hyn_A 33 YYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGI 105 (189)
T ss_dssp HHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHH
Confidence 45555555556666677786 552 2 2358889999999999999999999999999888876554
No 284
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.37 E-value=0.04 Score=52.86 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=22.2
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..++|.|+|.+|+||||++..+.....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 377999999999999999999886543
No 285
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.36 E-value=0.025 Score=47.33 Aligned_cols=28 Identities=11% Similarity=0.014 Sum_probs=24.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
..+|.|.|+.|+||||+|+.+++++.-.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~ 33 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIP 33 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 3589999999999999999999975433
No 286
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.36 E-value=0.02 Score=50.24 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||.+.+..-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999998763
No 287
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.33 E-value=0.08 Score=44.72 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=25.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccC-cCc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSN-FEG 198 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~-F~~ 198 (311)
-..|.|-|+.|.||||+++.+.+.+... +..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 4688999999999999999999986543 443
No 288
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.32 E-value=0.019 Score=49.18 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-.+++|+|..|.|||||.+.+..-+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999998754
No 289
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.32 E-value=0.037 Score=52.89 Aligned_cols=86 Identities=17% Similarity=0.110 Sum_probs=48.6
Q ss_pred EEEEEeccCcchhHHHH-HHHHHhhcc------CcCc-eEEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC
Q 042778 169 YALGIWGIGGIDRTTIA-RAIFNKISS------NFEG-SCFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD 235 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA-~~v~~~~~~------~F~~-~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~ 235 (311)
..++|.|-.|+|||+|| ..+.++... +-+. ++++- +.++......+.+.+...-..... ..++
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~----IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~ 238 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVA----IGQKRSTVAQLVKRLTDADAMKYTIVVSATASD 238 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEE----ESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTS
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEE----CCCCcHHHHHHHHHHHhcCCcccceEEEECCCC
Confidence 46799999999999995 577777552 2454 44544 333233455555555432111000 1111
Q ss_pred --H---------HHHHHHh--CCCeEEEEEecCCCh
Q 042778 236 --I---------ALSFRQL--SRRKVLIVLDDVTCF 258 (311)
Q Consensus 236 --~---------~~l~~~L--~~kr~LlVLDdV~~~ 258 (311)
. -.+-+++ .++.+||++||+...
T Consensus 239 p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 239 AAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHH
Confidence 0 2233333 479999999998653
No 290
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.32 E-value=0.019 Score=50.39 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||.+.+.--
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 358999999999999999998764
No 291
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.29 E-value=0.021 Score=49.34 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=21.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||.+.+.--
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998764
No 292
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.27 E-value=0.044 Score=48.10 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=28.2
Q ss_pred HHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 155 EEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 155 ~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.-+..+|.........+.++|++|.|||++|.++++.
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3456666643233456999999999999999999985
No 293
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.25 E-value=0.02 Score=49.68 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||.+.+..-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999998764
No 294
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.23 E-value=0.028 Score=50.50 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=22.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.++|.|.|+.|+||||||..++++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 5789999999999999999999874
No 295
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.23 E-value=0.017 Score=49.09 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.+++|+|..|.|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998764
No 296
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.22 E-value=0.044 Score=52.31 Aligned_cols=84 Identities=20% Similarity=0.132 Sum_probs=47.9
Q ss_pred EEEEEeccCcchhHHHH-HHHHHhhccCcCce-EEEecCccccCCCCChHHHHHHHHHHHhcCCC-----CCCC--H---
Q 042778 169 YALGIWGIGGIDRTTIA-RAIFNKISSNFEGS-CFLQNVREESQRPGGLGFLQQKLLSKLLQDGI-----VIPD--I--- 236 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA-~~v~~~~~~~F~~~-~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~--~--- 236 (311)
..++|.|-.|+|||+|| ..+.+... -+.. +++- +.++......+.+.+...-..... ..++ .
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~----IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVA----IGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEE----ESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEE----cCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 46899999999999996 47777653 3433 4444 333233455555555432111100 1111 0
Q ss_pred ------HHHHHHh--CCCeEEEEEecCCCh
Q 042778 237 ------ALSFRQL--SRRKVLIVLDDVTCF 258 (311)
Q Consensus 237 ------~~l~~~L--~~kr~LlVLDdV~~~ 258 (311)
-.+-+++ .++.+||++||+...
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccHHHH
Confidence 2233333 479999999998654
No 297
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.22 E-value=0.085 Score=58.28 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=33.3
Q ss_pred HHHHhhc-ccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 156 EIESLLG-AESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 156 ~l~~~L~-~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
.|..+|. .+-...+.+-|+|++|+||||||.++......+=..+.|+.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3555554 22233678999999999999999999887443323456776
No 298
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.21 E-value=0.02 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|.|..|.|||||.+.++--
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998764
No 299
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.20 E-value=0.089 Score=49.64 Aligned_cols=54 Identities=9% Similarity=0.186 Sum_probs=34.2
Q ss_pred chhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcC-ceEEEe
Q 042778 149 GVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFE-GSCFLQ 203 (311)
Q Consensus 149 Gr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~-~~~wv~ 203 (311)
|...-...|..++ .+-..-.++.|.|.+|+||||||..+.......-. .++|+.
T Consensus 185 ~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 185 GIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3333334444444 22223458999999999999999999887543222 456655
No 300
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.18 E-value=0.021 Score=49.94 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
-.+++|+|..|.|||||.+.+..-+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3589999999999999999987654
No 301
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.16 E-value=0.056 Score=55.26 Aligned_cols=50 Identities=12% Similarity=0.320 Sum_probs=38.6
Q ss_pred CCccchhhhHHHHHHhhccc------CC-CeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 145 NQLVGVESRVEEIESLLGAE------SK-DVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~------~~-~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..++|.+..++.+...+... .+ ....+.|+|..|+|||+||+++++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35789998888887776432 11 1468999999999999999999998643
No 302
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.14 E-value=0.043 Score=53.26 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=24.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
-.+++|+|+.|.|||||++.+...+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 468999999999999999999998754
No 303
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.13 E-value=0.021 Score=50.18 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||.+.+..-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998764
No 304
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.13 E-value=0.19 Score=44.37 Aligned_cols=117 Identities=15% Similarity=0.235 Sum_probs=60.4
Q ss_pred chHHHHHHHHhccceeeeeccCcccccchHHHHHHHHhhH-hHHHHhH--h--HHHHHHHHHHHHHHhhhcCCccCCCCc
Q 042778 61 ISQSLVDAIEASAISLIIFSEAYASSRWCLDELVKILTRE-LEEMFKE--N--SEKLQTWRNALKEAAGLSGFHSQNIRL 135 (311)
Q Consensus 61 ~~~~i~~ai~~s~~~i~v~S~~y~~S~wcl~El~~i~e~~-~~~~~~~--~--~~~v~~w~~~l~~~~~~~g~~~~~~~e 135 (311)
...++.+.++++++.|.|+.-.-..+..| .++.+++..+ .--.+.+ + .+.++.|.+.+.+ .|+..-
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~----~g~~~i---- 83 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFEN----QGIRSL---- 83 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHT----TTCCEE----
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHh----cCCcEE----
Confidence 34567777778888877776554444444 1233322111 0000000 0 1345667665532 122110
Q ss_pred ccccCCCCCCCccchhhhHHHHHHhhccc---------CCCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 136 AEVSPCSNKNQLVGVESRVEEIESLLGAE---------SKDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 136 ~~i~~~l~~~~~vGr~~~~~~l~~~L~~~---------~~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.+ ....-.|.+...+.+.+++... ......++|+|.+|+|||||...+..+
T Consensus 84 -~i----SA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~ 143 (282)
T 1puj_A 84 -SI----NSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK 143 (282)
T ss_dssp -EC----CTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred -EE----ECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcC
Confidence 00 1223345555555555555311 123457899999999999999988764
No 305
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.12 E-value=0.022 Score=49.98 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=21.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||.+.++--
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999998764
No 306
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.10 E-value=0.043 Score=48.26 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=22.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
.++|+|.|-||+||||+|..++..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~ 28 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE 28 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH
Confidence 367888999999999999998886543
No 307
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.10 E-value=0.029 Score=46.21 Aligned_cols=24 Identities=8% Similarity=0.340 Sum_probs=21.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998875
No 308
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.10 E-value=0.028 Score=44.78 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998763
No 309
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.09 E-value=0.025 Score=49.57 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=22.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
-.++.|+|.+|+|||||+..+...+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999998887543
No 310
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.09 E-value=0.045 Score=52.74 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=24.9
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
...+|.++|++|.||||+|+.+...+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 357899999999999999999988764433
No 311
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.08 E-value=0.026 Score=44.19 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=19.7
Q ss_pred EEEEeccCcchhHHHHHHHHHh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.|.|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 312
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.07 E-value=0.1 Score=46.66 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=26.9
Q ss_pred HHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 155 EEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 155 ~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
..|..+|..+-..-.++.|+|.+|+||||||..+...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444555422223568999999999999999988865
No 313
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.06 E-value=0.08 Score=47.98 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=27.0
Q ss_pred HHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 157 IESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 157 l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
+.+-+...-....+++|+|..|+|||||.+.+....
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 333333333457899999999999999999988643
No 314
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.06 E-value=0.028 Score=50.33 Aligned_cols=26 Identities=8% Similarity=0.216 Sum_probs=22.3
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.-.+++|+|..|.|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 35689999999999999999987653
No 315
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.06 E-value=0.023 Score=50.30 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||.+.+.--
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 348999999999999999998764
No 316
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.05 E-value=0.035 Score=50.68 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=32.0
Q ss_pred HHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhcc--Cc---Cce-EEEe
Q 042778 157 IESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISS--NF---EGS-CFLQ 203 (311)
Q Consensus 157 l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~--~F---~~~-~wv~ 203 (311)
|..+|..+-..-.++.|+|..|+|||||+..+...... .. .+. +|+.
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~ 172 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 172 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe
Confidence 33444432234679999999999999999998876532 12 233 7887
No 317
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.02 E-value=0.024 Score=49.38 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.9
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.+++|+|..|.|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998764
No 318
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.01 E-value=0.096 Score=49.27 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=42.8
Q ss_pred cchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCc-CceEEEecCccccCCCCChHHHHHHHHHHH
Q 042778 148 VGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNF-EGSCFLQNVREESQRPGGLGFLQQKLLSKL 226 (311)
Q Consensus 148 vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F-~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l 226 (311)
.|...-...|..++ .+-..-.++.|.|.+|+||||||..++....... ..++|+. . ......+...++...
T Consensus 181 ~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s----l---E~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 181 AGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS----L---EMPAAQLTLRMMCSE 252 (444)
T ss_dssp --CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE----S---SSCHHHHHHHHHHHH
T ss_pred CcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE----C---CCCHHHHHHHHHHHH
Confidence 34444444555555 2322345889999999999999999888754322 2456655 1 334556666665443
No 319
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.99 E-value=0.019 Score=48.95 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=22.3
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.-.+|+|.|..|.|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3579999999999999999988775
No 320
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.96 E-value=0.034 Score=45.29 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=21.8
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568899999999999999988775
No 321
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.96 E-value=0.032 Score=46.82 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=21.6
Q ss_pred EEEEEeccCcchhHHHHHHHHHhh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
+.|.|.|..|+||||||.++..+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999999998874
No 322
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.94 E-value=0.032 Score=52.18 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=26.9
Q ss_pred HHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHH
Q 042778 156 EIESLLGAESKDVYALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 156 ~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~ 190 (311)
.+.+.|....+...+++|+|..|+|||||.+.+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 34444443334567999999999999999999987
No 323
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.93 E-value=0.079 Score=51.11 Aligned_cols=49 Identities=10% Similarity=0.052 Sum_probs=33.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHH
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKL 222 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~l 222 (311)
-..++|.|..|+|||+|++.+.+... -+.++++- +.++.....++.+.+
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~~~--~~~~V~~~----iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKWSD--AQVVIYIG----CGERGNEMTDVLEEF 275 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHHSS--CSEEEEEE----CCSSSSHHHHHHHHT
T ss_pred CCeEEeecCCCCCHHHHHHHHHhccC--CCEEEEEE----ecccHHHHHHHHHHH
Confidence 34789999999999999999887532 24566665 444244555555554
No 324
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.93 E-value=0.042 Score=43.29 Aligned_cols=24 Identities=8% Similarity=0.274 Sum_probs=21.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.-.|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998875
No 325
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.90 E-value=0.03 Score=45.48 Aligned_cols=23 Identities=22% Similarity=0.605 Sum_probs=20.4
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998875
No 326
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.86 E-value=0.093 Score=44.73 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=27.2
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhcc--CcCceE
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISS--NFEGSC 200 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~--~F~~~~ 200 (311)
....|.|.|+.|+||||+++.+.+.+.. .++..+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 3678999999999999999999998654 444443
No 327
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.85 E-value=0.032 Score=47.88 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=21.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
...+||.|++|+||||+|+.+.+++
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999998875
No 328
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.85 E-value=0.032 Score=45.28 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.4
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.+.+|+|..|.|||||+.+++--
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 38899999999999999998763
No 329
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.84 E-value=0.036 Score=44.87 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999874
No 330
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.83 E-value=0.033 Score=48.96 Aligned_cols=22 Identities=18% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEeccCcchhHHHHHHHHHh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.++|+|..|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 331
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.75 E-value=0.031 Score=45.47 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.0
Q ss_pred EEEEeccCcchhHHHHHHHHH
Q 042778 170 ALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~ 190 (311)
.|+|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998876
No 332
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.73 E-value=0.057 Score=46.17 Aligned_cols=30 Identities=7% Similarity=-0.066 Sum_probs=23.4
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhc-cCcCc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKIS-SNFEG 198 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~-~~F~~ 198 (311)
-.|.+.|.||+||||+|..+..... ..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V 37 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRV 37 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCE
Confidence 3477889999999999999888744 34554
No 333
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.73 E-value=0.075 Score=45.14 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=23.7
Q ss_pred CeEEEEEec-cCcchhHHHHHHHHHhhccC
Q 042778 167 DVYALGIWG-IGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 167 ~~~vi~I~G-mgGiGKTtLA~~v~~~~~~~ 195 (311)
..++|+|++ -||+||||+|..++..+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhC
Confidence 357888884 59999999999999886654
No 334
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.70 E-value=0.058 Score=44.48 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=21.6
Q ss_pred EEEEEe-ccCcchhHHHHHHHHHhhcc
Q 042778 169 YALGIW-GIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 169 ~vi~I~-GmgGiGKTtLA~~v~~~~~~ 194 (311)
++|+|+ +-||+||||+|..++..+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~ 28 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR 28 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 578888 67999999999998887554
No 335
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.70 E-value=0.064 Score=45.53 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=21.3
Q ss_pred EEEeccCcchhHHHHHHHHHhhccC
Q 042778 171 LGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 171 i~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
|+|.|-||+||||+|..++..+...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~ 27 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD 27 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC
Confidence 6679999999999999998876543
No 336
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.69 E-value=0.031 Score=50.13 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||++.+..-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 458999999999999999988653
No 337
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.64 E-value=0.04 Score=51.25 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=21.9
Q ss_pred EEEEEeccCcchhHHHHHHHHHhh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.+|.|.|+.|+||||||..++.+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 578999999999999999998874
No 338
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.63 E-value=0.037 Score=43.48 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=20.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
..-|.|+|.+|+|||||...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999998764
No 339
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.60 E-value=0.11 Score=49.10 Aligned_cols=55 Identities=18% Similarity=0.089 Sum_probs=35.3
Q ss_pred cchhhhHHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 148 VGVESRVEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 148 vGr~~~~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
.|...-...|..++. +-..-.++.|.|.+|+||||||..++.....+=..++|++
T Consensus 178 ~gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 178 TGVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CSBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 344444445555552 2223458899999999999999998887544312455554
No 340
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.60 E-value=0.067 Score=50.18 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=24.3
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
...+++|+|.+|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999988865443
No 341
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.58 E-value=0.031 Score=48.94 Aligned_cols=24 Identities=33% Similarity=0.356 Sum_probs=21.4
Q ss_pred EEEEEeccCcchhHHHHHHHHHhh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.+++|.|..|.|||||.+.++--.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999988654
No 342
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.57 E-value=0.057 Score=43.73 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=22.1
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.....|.|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34677899999999999999988764
No 343
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.54 E-value=0.084 Score=45.13 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=21.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
-..|.|-|+.|+||||+++.+.+.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4589999999999999999999986543
No 344
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.54 E-value=0.059 Score=51.10 Aligned_cols=29 Identities=10% Similarity=0.036 Sum_probs=24.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNF 196 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F 196 (311)
..+|.++|+.|.||||+|+.+.+.....|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 56889999999999999999998755444
No 345
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.53 E-value=0.043 Score=44.53 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=21.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
.--|.|+|.+|+|||||.+.+.+....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 456889999999999999877765433
No 346
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.51 E-value=0.071 Score=44.77 Aligned_cols=30 Identities=13% Similarity=0.368 Sum_probs=25.5
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCcCc
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNFEG 198 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~ 198 (311)
..|.|-|.-|+||||+++.+.+.+...++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCE
Confidence 468899999999999999999988665553
No 347
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.51 E-value=0.044 Score=50.16 Aligned_cols=26 Identities=8% Similarity=0.151 Sum_probs=22.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
...++|+|..|.|||||++.+...+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999887643
No 348
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.44 E-value=0.043 Score=43.18 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998874
No 349
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.43 E-value=0.051 Score=43.14 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=20.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999988764
No 350
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.43 E-value=0.044 Score=49.24 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.0
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.+.+++|.|+.|.|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999988653
No 351
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.38 E-value=0.026 Score=49.03 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=23.4
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
....|.|.|..|+||||+|+.+.+.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999998887753
No 352
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.37 E-value=0.047 Score=46.58 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=22.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
..+|+|.|+.|+||||+|+.+.+++
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 5699999999999999999998864
No 353
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.35 E-value=0.04 Score=50.48 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|.|..|+|||||.+.++--
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 358999999999999999999863
No 354
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.34 E-value=0.058 Score=51.50 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=46.2
Q ss_pred EEEEEeccCcchhHHHH-HHHHHhhccCcCce-EEEecCccccCCCCChHHHHHHHHHHHhc--------CCCCC---CC
Q 042778 169 YALGIWGIGGIDRTTIA-RAIFNKISSNFEGS-CFLQNVREESQRPGGLGFLQQKLLSKLLQ--------DGIVI---PD 235 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA-~~v~~~~~~~F~~~-~wv~~~~~~s~~~~~~~~l~~~ll~~l~~--------~~~~~---~~ 235 (311)
..++|.|-.|+|||+|| ..+.+... -+.. +++- +.++......+.+.+...-.. ..++. .-
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~----iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQG--QNVICVYVA----IGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCCT--TTCEEEEEE----ESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred CEEEEecCCCCCccHHHHHHHHHhhc--CCcEEEEEE----cCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 46799999999999996 47777654 3433 4443 333123344444444332110 11110 00
Q ss_pred H---------HHHHHHhCCCeEEEEEecCCCh
Q 042778 236 I---------ALSFRQLSRRKVLIVLDDVTCF 258 (311)
Q Consensus 236 ~---------~~l~~~L~~kr~LlVLDdV~~~ 258 (311)
. +.+++ .++.+||++||+...
T Consensus 238 ~a~~~a~tiAEyfrd--~G~dVLli~Dsltr~ 267 (507)
T 1fx0_A 238 LAPYTGAALAEYFMY--RERHTLIIYDDLSKQ 267 (507)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEEEecHHHH
Confidence 1 33443 589999999998654
No 355
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.33 E-value=0.044 Score=43.26 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=20.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.-.|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998875
No 356
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.33 E-value=0.058 Score=49.66 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=23.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
-.+++|+|..|.|||||.+.+...+...
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 5689999999999999999998865443
No 357
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.32 E-value=0.043 Score=43.38 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=20.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.-.|.|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999988864
No 358
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.32 E-value=0.11 Score=44.62 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=27.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc-CcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS-NFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~-~F~~~~wv~ 203 (311)
...|.|.|+.|+||||+++.+.+.+.. .+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec
Confidence 468999999999999999999998644 455344443
No 359
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.31 E-value=0.044 Score=43.15 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=19.6
Q ss_pred EEEEeccCcchhHHHHHHHHHh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 360
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.31 E-value=0.038 Score=55.99 Aligned_cols=52 Identities=23% Similarity=0.311 Sum_probs=38.8
Q ss_pred CCCccchhhhHHHHHHhhccc-----------CCCeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 144 KNQLVGVESRVEEIESLLGAE-----------SKDVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
-.++.|.+...++|.+.+... ....+-+.++|++|.|||.||+++++.....
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 456778888888887765421 1124557899999999999999999986543
No 361
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.30 E-value=0.043 Score=50.44 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||.+.+.--
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 458999999999999999998763
No 362
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.28 E-value=0.043 Score=43.32 Aligned_cols=23 Identities=17% Similarity=0.652 Sum_probs=20.1
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998864
No 363
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.28 E-value=0.047 Score=42.78 Aligned_cols=23 Identities=17% Similarity=0.523 Sum_probs=20.0
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999988764
No 364
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.26 E-value=0.05 Score=45.30 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=22.1
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
....|.|+|.+|+|||||...+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4667899999999999999998875
No 365
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.25 E-value=0.12 Score=43.70 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=26.4
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhcc-CcCceEEEe
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISS-NFEGSCFLQ 203 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~-~F~~~~wv~ 203 (311)
..|.|-|..|.||||+++.+.+.+.. .+..+.+..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~r 39 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTR 39 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeee
Confidence 47899999999999999999998644 343334433
No 366
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.24 E-value=0.046 Score=44.29 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=20.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998774
No 367
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.23 E-value=0.037 Score=49.22 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||.+.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 458999999999999999998775
No 368
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.21 E-value=0.068 Score=42.60 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=22.0
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
....|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4667899999999999999998875
No 369
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.14 E-value=0.055 Score=43.15 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=21.7
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
....|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4667899999999999999998764
No 370
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.13 E-value=0.047 Score=49.97 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|.|..|+|||||.+.++--
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999998864
No 371
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.12 E-value=0.071 Score=52.01 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=23.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+|.|.|+.|.||||+|+.+.+++.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999999998864
No 372
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.11 E-value=0.054 Score=42.59 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.3
Q ss_pred EEEEeccCcchhHHHHHHHHHh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-|.|+|.+|+|||||...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999998764
No 373
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.11 E-value=0.074 Score=43.76 Aligned_cols=24 Identities=17% Similarity=-0.146 Sum_probs=20.0
Q ss_pred EEEEEeccCcchhHHHHHHHHHhh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.++.|+|..|.||||++..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999997766653
No 374
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.08 E-value=0.046 Score=43.99 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=20.4
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998864
No 375
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.07 E-value=0.055 Score=43.14 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=21.8
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
+...-|.|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34667899999999999999988654
No 376
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.07 E-value=0.1 Score=45.30 Aligned_cols=26 Identities=12% Similarity=0.423 Sum_probs=22.5
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.....|+|+|.+|+|||||...+...
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34677899999999999999998874
No 377
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.06 E-value=0.046 Score=49.92 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=21.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|.|..|.|||||.+.++--
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 358999999999999999999864
No 378
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.05 E-value=0.13 Score=46.28 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=21.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..++...|-||+||||+|.+++.....
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~ 40 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMAR 40 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHH
Confidence 466677799999999999998876544
No 379
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.04 E-value=0.051 Score=43.26 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=21.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 567899999999999999998875
No 380
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.04 E-value=0.046 Score=43.08 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=18.5
Q ss_pred EEEEeccCcchhHHHHHHHHH
Q 042778 170 ALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~ 190 (311)
-|.|+|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998754
No 381
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.03 E-value=0.05 Score=44.24 Aligned_cols=25 Identities=8% Similarity=0.363 Sum_probs=21.8
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
....|.|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4677899999999999999998764
No 382
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.02 E-value=0.068 Score=42.63 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=21.7
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
....|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3567899999999999999988764
No 383
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.02 E-value=0.05 Score=50.29 Aligned_cols=24 Identities=21% Similarity=0.154 Sum_probs=21.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|.|..|+|||||.+.+.--
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 358999999999999999999764
No 384
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.02 E-value=0.055 Score=43.16 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=20.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999988764
No 385
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.02 E-value=0.064 Score=42.35 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.2
Q ss_pred EEEEEeccCcchhHHHHHHHHH
Q 042778 169 YALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~ 190 (311)
--|.|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999998864
No 386
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.01 E-value=0.042 Score=50.30 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|.|..|.|||||.+.++--
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999998863
No 387
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.00 E-value=0.052 Score=43.66 Aligned_cols=24 Identities=29% Similarity=0.630 Sum_probs=21.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 567899999999999999998875
No 388
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.00 E-value=0.051 Score=49.85 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=21.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|.|..|.|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 458999999999999999999863
No 389
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.97 E-value=0.084 Score=43.46 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=19.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHH
Q 042778 168 VYALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~ 190 (311)
...|+|+|.+|+|||||...+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999998865
No 390
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.97 E-value=0.1 Score=45.37 Aligned_cols=26 Identities=15% Similarity=0.446 Sum_probs=22.5
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.....|.++|.+|+|||||...+...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34678899999999999999998875
No 391
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.96 E-value=0.056 Score=42.55 Aligned_cols=24 Identities=8% Similarity=0.288 Sum_probs=20.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.-.|.|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999998864
No 392
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.95 E-value=0.054 Score=43.18 Aligned_cols=24 Identities=13% Similarity=0.463 Sum_probs=20.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
..-|.|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999998764
No 393
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.94 E-value=0.052 Score=49.83 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=21.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|.|..|.|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 458999999999999999998864
No 394
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.93 E-value=0.077 Score=48.57 Aligned_cols=90 Identities=16% Similarity=0.085 Sum_probs=49.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCC--CChHHH---HHHHHHHHhcCCCCCCCH-HHHHH
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRP--GGLGFL---QQKLLSKLLQDGIVIPDI-ALSFR 241 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~--~~~~~l---~~~ll~~l~~~~~~~~~~-~~l~~ 241 (311)
-.+++|+|..|.|||||++.+...+.. -.+.+.+.+..+... . .....+ +...+ + .....+. ..++.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie~~~e~~~-~~~~~~v~~v~~q~~~~----~-~~~~~t~~~~i~~ 247 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIEDVPELFL-PDHPNHVHLFYPSEAKE----E-ENAPVTAATLLRS 247 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEESSSCCCC-TTCSSEEEEECC---------------CCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEECCccccCc-cccCCEEEEeecCcccc----c-cccccCHHHHHHH
Confidence 347999999999999999999886544 245566664433211 0 000000 00000 0 0001122 56666
Q ss_pred HhCCCeEEEEEecCCChHHHHHh
Q 042778 242 QLSRRKVLIVLDDVTCFRQIKSL 264 (311)
Q Consensus 242 ~L~~kr~LlVLDdV~~~~~l~~l 264 (311)
.++...-.+++|.+...+.++.+
T Consensus 248 ~l~~~pd~~l~~e~r~~~~~~~l 270 (361)
T 2gza_A 248 CLRMKPTRILLAELRGGEAYDFI 270 (361)
T ss_dssp HTTSCCSEEEESCCCSTHHHHHH
T ss_pred HHhcCCCEEEEcCchHHHHHHHH
Confidence 66665556778888776655544
No 395
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.91 E-value=0.086 Score=48.38 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=27.5
Q ss_pred CCeEEEEEec-cCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 166 KDVYALGIWG-IGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 166 ~~~~vi~I~G-mgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
...++|+|+| -||+||||+|..++..+...=..+..++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3478999985 8999999999998887554322334444
No 396
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.90 E-value=0.17 Score=48.36 Aligned_cols=51 Identities=8% Similarity=-0.029 Sum_probs=35.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccCc-CceEEEecCccccCCCCChHHHHHHHHHH
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSNF-EGSCFLQNVREESQRPGGLGFLQQKLLSK 225 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~F-~~~~wv~~~~~~s~~~~~~~~l~~~ll~~ 225 (311)
-.++.|.|.+|+||||||..++....... ..++|+. . ......+...++..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s----~---E~s~~~l~~r~~~~ 293 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM----L---EESVEETAEDLIGL 293 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE----S---SSCHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe----c---cCCHHHHHHHHHHH
Confidence 45789999999999999999988765442 3456665 2 23445555555443
No 397
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.90 E-value=0.053 Score=49.96 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=21.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|.|..|.|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 348999999999999999999864
No 398
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.89 E-value=0.11 Score=44.11 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=25.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh-hccCcCceEEEe
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK-ISSNFEGSCFLQ 203 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~-~~~~F~~~~wv~ 203 (311)
-.++.|.|.+|+||||||..++.. ....-..++++.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 458889999999999999887654 333233445554
No 399
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.88 E-value=0.11 Score=50.42 Aligned_cols=26 Identities=15% Similarity=0.255 Sum_probs=23.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+|.+.|+.|.||||+|+.+..++.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 57899999999999999999988754
No 400
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.88 E-value=0.055 Score=44.08 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456889999999999999888764
No 401
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.85 E-value=0.053 Score=43.40 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=20.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999988774
No 402
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.84 E-value=0.057 Score=43.93 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=20.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.-.|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999877664
No 403
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.82 E-value=0.057 Score=43.31 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 457899999999999999998864
No 404
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.82 E-value=0.055 Score=49.85 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=21.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|.|..|.|||||.+.++--
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 458999999999999999998763
No 405
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.81 E-value=0.057 Score=43.46 Aligned_cols=23 Identities=17% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
--|.|+|.+|+|||||...+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998874
No 406
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.79 E-value=0.062 Score=52.87 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=23.6
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
...+|.|.|+.|+||||+|+.+.+++
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999999886
No 407
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.78 E-value=0.057 Score=50.23 Aligned_cols=49 Identities=10% Similarity=0.209 Sum_probs=31.4
Q ss_pred HHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHh--hcc----CcCceEEEe
Q 042778 155 EEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNK--ISS----NFEGSCFLQ 203 (311)
Q Consensus 155 ~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~--~~~----~F~~~~wv~ 203 (311)
..|-.+|..+-..-.++.|+|.+|+|||||+..+.-. ... .-..++|+.
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 3455555432223458999999999999999976543 211 123467776
No 408
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.78 E-value=0.1 Score=43.69 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=24.2
Q ss_pred EEEEe-ccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 170 ALGIW-GIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 170 vi~I~-GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
+|+|+ +-||+||||+|..++..+...= .++-++
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD 35 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 56665 7799999999999998765543 444444
No 409
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.72 E-value=0.058 Score=43.44 Aligned_cols=24 Identities=13% Similarity=0.385 Sum_probs=21.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 567899999999999999998764
No 410
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.71 E-value=0.078 Score=41.76 Aligned_cols=24 Identities=8% Similarity=0.281 Sum_probs=20.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
..-|.|+|.+|+|||||...+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999988764
No 411
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.68 E-value=0.063 Score=43.29 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=21.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 567899999999999999998864
No 412
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.67 E-value=0.065 Score=42.35 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 413
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.67 E-value=0.062 Score=43.03 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=20.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.-.|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999988764
No 414
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.66 E-value=0.061 Score=43.95 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998874
No 415
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.66 E-value=0.08 Score=43.45 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.8
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
....|.|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3567899999999999999998774
No 416
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.64 E-value=0.15 Score=46.54 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=23.1
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~ 193 (311)
..+++.+.|-||+||||+|.+++....
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 467888999999999999998877655
No 417
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=92.63 E-value=0.12 Score=47.70 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=23.3
Q ss_pred CCeEEEEEe-ccCcchhHHHHHHHHHhhc
Q 042778 166 KDVYALGIW-GIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 166 ~~~~vi~I~-GmgGiGKTtLA~~v~~~~~ 193 (311)
...++|+|+ |-||+||||+|..++..+.
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMR 134 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 347888888 7899999999999888765
No 418
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.63 E-value=0.065 Score=42.99 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=20.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999988764
No 419
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.61 E-value=0.035 Score=54.44 Aligned_cols=49 Identities=14% Similarity=0.030 Sum_probs=34.8
Q ss_pred CCCccchhhhHHHHHHhhcccCC---------CeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 144 KNQLVGVESRVEEIESLLGAESK---------DVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~---------~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.+.++|.+.....+...|..+.. .-.-|.++|.+|+|||+||+.+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 56789999866666544443210 01158899999999999999998764
No 420
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.61 E-value=0.062 Score=42.97 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=20.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999988764
No 421
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.60 E-value=0.075 Score=44.59 Aligned_cols=26 Identities=12% Similarity=0.117 Sum_probs=22.5
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
...+|+|+||.|+||+|+|..+-+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 36799999999999999999886654
No 422
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.60 E-value=0.056 Score=43.74 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=21.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|..|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 557889999999999999998875
No 423
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.59 E-value=0.055 Score=43.65 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=19.7
Q ss_pred EEEEeccCcchhHHHHHHHHHh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.|.|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998774
No 424
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.59 E-value=0.066 Score=43.56 Aligned_cols=24 Identities=17% Similarity=0.392 Sum_probs=21.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|+|+|..|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 567899999999999999988874
No 425
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.56 E-value=0.064 Score=43.88 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=20.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
..-|.|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998774
No 426
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.53 E-value=0.063 Score=43.04 Aligned_cols=24 Identities=8% Similarity=0.270 Sum_probs=21.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 567899999999999999998853
No 427
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.50 E-value=0.12 Score=48.22 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=24.7
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
.-.+++|+|..|.|||||.+.+...+...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 35689999999999999999998876543
No 428
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.47 E-value=0.066 Score=43.85 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 567899999999999999988764
No 429
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.47 E-value=0.067 Score=43.43 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.-.|+|+|..|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998875
No 430
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.47 E-value=0.21 Score=45.33 Aligned_cols=29 Identities=21% Similarity=0.238 Sum_probs=22.5
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
....++.+.|-||+||||+|.+++.....
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~ 52 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAE 52 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 33566677799999999999988876433
No 431
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.45 E-value=0.066 Score=42.57 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=20.1
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.|.|+|..|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998764
No 432
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.43 E-value=0.093 Score=46.76 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=25.2
Q ss_pred HHHHHHhhcccCCCeEEEEEeccCcchhHHHHHHHHHhh
Q 042778 154 VEEIESLLGAESKDVYALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 154 ~~~l~~~L~~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
++++.+.+. -.+++|.|..|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 444555543 2478999999999999999998 53
No 433
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.43 E-value=0.037 Score=45.77 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=20.6
Q ss_pred CeEEEEEeccCcchhHHHHHHHHH
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~ 190 (311)
....|+|+|..|+|||||.+.+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999987764
No 434
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.43 E-value=0.057 Score=48.13 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=18.7
Q ss_pred EEEEeccCcchhHHHHHHHHH
Q 042778 170 ALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~ 190 (311)
-|+|+|..|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999775
No 435
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.42 E-value=0.065 Score=49.71 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.3
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|.|..|+|||||.+.+.--
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 458999999999999999998863
No 436
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.41 E-value=0.071 Score=43.38 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.--|.|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 456889999999999999998875
No 437
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.39 E-value=0.085 Score=48.06 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=22.6
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
+..+|+|+|.+|+|||||...+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999998864
No 438
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.39 E-value=0.053 Score=44.66 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.2
Q ss_pred CeEEEEEeccCcchhHHHHHHHH
Q 042778 167 DVYALGIWGIGGIDRTTIARAIF 189 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~ 189 (311)
....|.|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 36678999999999999999874
No 439
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.36 E-value=0.074 Score=42.45 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=21.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|..|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999998764
No 440
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.29 E-value=0.069 Score=43.55 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.-.|+|+|..|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 557899999999999999998764
No 441
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.28 E-value=0.06 Score=44.13 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=20.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
..-|.|+|.+|+|||||.+.+.++
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456889999999999999877664
No 442
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.27 E-value=0.18 Score=45.66 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=23.2
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
..+++.+.|-||+||||+|.+++.....
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~ 42 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAK 42 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 3677888899999999999998876544
No 443
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.26 E-value=0.073 Score=43.75 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 567899999999999999998875
No 444
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=92.26 E-value=0.08 Score=44.36 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=20.9
Q ss_pred EEEEEecc-CcchhHHHHHHHHHhhcc
Q 042778 169 YALGIWGI-GGIDRTTIARAIFNKISS 194 (311)
Q Consensus 169 ~vi~I~Gm-gGiGKTtLA~~v~~~~~~ 194 (311)
++|.|.|. ||+||||+|..++..+..
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~ 28 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKA 28 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57888875 899999999998876443
No 445
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.25 E-value=0.074 Score=48.49 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
-.+++|.|..|.|||||.+.+......
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 458999999999999999999998654
No 446
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.23 E-value=0.089 Score=43.48 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=20.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.-.|.|+|.+|+|||||...+.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999888764
No 447
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.20 E-value=0.081 Score=46.90 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=22.2
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
....|+|+|..|+|||||..++...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 4788999999999999999998764
No 448
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.14 E-value=0.078 Score=43.16 Aligned_cols=24 Identities=17% Similarity=0.533 Sum_probs=20.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
..-|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456899999999999999998763
No 449
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.14 E-value=0.079 Score=43.89 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=20.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999998764
No 450
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.12 E-value=0.096 Score=42.47 Aligned_cols=24 Identities=13% Similarity=0.335 Sum_probs=21.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|..|+|||||...+.+.
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 567899999999999999998874
No 451
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.10 E-value=0.35 Score=40.70 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=18.8
Q ss_pred EEEEeccCcchhHHHHHHHHHh
Q 042778 170 ALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 170 vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-|.|+|-+|+|||+|...+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4778999999999999987653
No 452
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.10 E-value=0.092 Score=44.66 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=22.2
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4678999999999999999998874
No 453
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.10 E-value=0.082 Score=42.93 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=20.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|..|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998864
No 454
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.09 E-value=0.082 Score=43.06 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.--|.|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998875
No 455
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.09 E-value=0.08 Score=42.94 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=21.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|..|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 567899999999999999998774
No 456
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.08 E-value=0.076 Score=43.57 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=21.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
..-|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 557899999999999999998774
No 457
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.07 E-value=0.08 Score=42.86 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=21.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998775
No 458
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.06 E-value=0.08 Score=43.89 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=21.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 567899999999999999988764
No 459
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.05 E-value=0.093 Score=47.42 Aligned_cols=86 Identities=15% Similarity=0.030 Sum_probs=50.5
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccCcCceEEEecCccccCCCCChHHHHHHHHHHHhcCCCCCCCH-HHHHHHhCCCe
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQNVREESQRPGGLGFLQQKLLSKLLQDGIVIPDI-ALSFRQLSRRK 247 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~-~~l~~~L~~kr 247 (311)
.+++|+|..|.|||||++.+..-+... .+.+.+.+..+... . .... . + .+... .-... ..+.+.|..+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~-~-~~~~---~-i-~~~~g--gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVF-K-HHKN---Y-T-QLFFG--GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCC-S-SCSS---E-E-EEECB--TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeecccc-c-cchh---E-E-EEEeC--CChhHHHHHHHHhhhCC
Confidence 479999999999999999998876442 55666664332211 0 0000 0 0 00000 01112 56677777777
Q ss_pred EEEEEecCCChHHHHHh
Q 042778 248 VLIVLDDVTCFRQIKSL 264 (311)
Q Consensus 248 ~LlVLDdV~~~~~l~~l 264 (311)
=+|+||++.+.+.++.+
T Consensus 242 ~ilildE~~~~e~~~~l 258 (330)
T 2pt7_A 242 DRIILGELRSSEAYDFY 258 (330)
T ss_dssp SEEEECCCCSTHHHHHH
T ss_pred CEEEEcCCChHHHHHHH
Confidence 78889998875554444
No 460
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.03 E-value=0.11 Score=43.23 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=21.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 567889999999999999998874
No 461
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.03 E-value=0.08 Score=43.43 Aligned_cols=25 Identities=8% Similarity=0.275 Sum_probs=21.3
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
....|.|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3567899999999999999998764
No 462
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.02 E-value=0.085 Score=42.90 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=20.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.--|.|+|..|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999988764
No 463
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.98 E-value=0.11 Score=42.66 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.7
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
+-|.|.|..|+||||||.++..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46889999999999999999885
No 464
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.95 E-value=0.075 Score=43.52 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=20.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.-.|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 556889999999999999988754
No 465
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.95 E-value=0.22 Score=54.27 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=35.9
Q ss_pred hhhhHHHHHHhhc-ccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 150 VESRVEEIESLLG-AESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 150 r~~~~~~l~~~L~-~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
...-..+|..+|. .+-..-.++.|.|.+|+||||||..+.......=..++|+.
T Consensus 713 i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 713 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp ECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 3334445555554 22223458999999999999999999887554323466665
No 466
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.85 E-value=0.091 Score=42.58 Aligned_cols=24 Identities=8% Similarity=0.261 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|..|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 567899999999999999998764
No 467
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.83 E-value=0.13 Score=41.21 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.7
Q ss_pred CeEEEEEeccCcchhHHHHHHHHH
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~ 190 (311)
....|.|+|.+|+|||||...+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 466788999999999999988764
No 468
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.83 E-value=0.091 Score=46.75 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=21.7
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 568999999999999999998874
No 469
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.82 E-value=0.16 Score=43.21 Aligned_cols=28 Identities=11% Similarity=-0.113 Sum_probs=23.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
-.++.|+|..|.||||++..+.++...+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~ 39 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA 39 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 5688999999999999999888876544
No 470
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=91.81 E-value=0.16 Score=43.46 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEEEe-ccCcchhHHHHHHHHHhhcc
Q 042778 169 YALGIW-GIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 169 ~vi~I~-GmgGiGKTtLA~~v~~~~~~ 194 (311)
++|+|+ +-||+||||+|..++..+..
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~ 29 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQ 29 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHh
Confidence 577776 56899999999998887554
No 471
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.78 E-value=0.072 Score=50.50 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.5
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||++.+..-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 458999999999999999998774
No 472
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.77 E-value=0.2 Score=47.15 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.0
Q ss_pred EEEEEeccCcchhHHHHHHHHHhhccC
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKISSN 195 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~~~~ 195 (311)
+.+.|.|.+|.||||++..+...+...
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 389999999999999999998875443
No 473
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.76 E-value=0.085 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.6
Q ss_pred EEEEEeccCcchhHHHHHHHHHhh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNKI 192 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~~ 192 (311)
.+++|+|..|.|||||++.++--.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998753
No 474
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.75 E-value=0.095 Score=42.96 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.0
Q ss_pred eEEEEEeccCcchhHHHHHHHHH
Q 042778 168 VYALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~ 190 (311)
.-.|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999998874
No 475
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.72 E-value=0.079 Score=43.60 Aligned_cols=24 Identities=8% Similarity=0.365 Sum_probs=20.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
..-|.|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 567889999999999999988753
No 476
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.72 E-value=0.089 Score=42.78 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.2
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|..|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998875
No 477
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.70 E-value=0.096 Score=45.63 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|+|+|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998764
No 478
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.70 E-value=0.11 Score=44.72 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=20.5
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.+|||.|+.|+||||+|+.+..+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~ 24 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999988664
No 479
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.63 E-value=0.1 Score=42.37 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=21.9
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
....|.|+|..|+|||||...+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3678999999999999999988764
No 480
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.62 E-value=0.09 Score=42.53 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=22.0
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHh
Q 042778 166 KDVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 166 ~~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.....|.|+|..|+|||||...+.+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998853
No 481
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.62 E-value=0.084 Score=42.51 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=20.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|..|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 482
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=91.60 E-value=0.18 Score=42.56 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=24.7
Q ss_pred EEEEEe-ccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 169 YALGIW-GIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 169 ~vi~I~-GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
++|+|+ +-||+||||+|..++..+...=..+..++
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 577776 46899999999999887654422344444
No 483
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.59 E-value=0.096 Score=43.28 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=20.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999988764
No 484
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.58 E-value=0.1 Score=43.93 Aligned_cols=25 Identities=4% Similarity=0.115 Sum_probs=21.9
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHh
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
....|.|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678899999999999999998764
No 485
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.54 E-value=0.078 Score=51.28 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.0
Q ss_pred EEEEEeccCcchhHHHHHHHHHh
Q 042778 169 YALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 169 ~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.+++|+|..|+|||||++.++--
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 486
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.53 E-value=0.35 Score=53.54 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=38.9
Q ss_pred ccchhhhHHHHHHhhc-ccCCCeEEEEEeccCcchhHHHHHHHHHhhccCcCceEEEe
Q 042778 147 LVGVESRVEEIESLLG-AESKDVYALGIWGIGGIDRTTIARAIFNKISSNFEGSCFLQ 203 (311)
Q Consensus 147 ~vGr~~~~~~l~~~L~-~~~~~~~vi~I~GmgGiGKTtLA~~v~~~~~~~F~~~~wv~ 203 (311)
..+...-...|..+|. .+=..-.++-|+|.+|+||||||..+.......=..++|++
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3344444556666664 22223568999999999999999999887654434567776
No 487
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.52 E-value=0.11 Score=44.02 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=24.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhhcc
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~~~~ 194 (311)
-..|.|-|+.|.||||+++.+.+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457899999999999999999998765
No 488
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.48 E-value=0.12 Score=40.81 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=20.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
..+..|+|..|.|||||..+++--
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999988753
No 489
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.48 E-value=0.1 Score=42.95 Aligned_cols=24 Identities=13% Similarity=0.342 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 567899999999999999998764
No 490
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.48 E-value=0.089 Score=49.31 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=20.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
+.-++|+|..|+|||||.+.++..
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCc
Confidence 444999999999999999998764
No 491
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.45 E-value=0.1 Score=43.16 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=20.8
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.--|.|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999988764
No 492
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=91.45 E-value=0.14 Score=44.07 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=22.9
Q ss_pred CeEEEEEe-ccCcchhHHHHHHHHHhhcc
Q 042778 167 DVYALGIW-GIGGIDRTTIARAIFNKISS 194 (311)
Q Consensus 167 ~~~vi~I~-GmgGiGKTtLA~~v~~~~~~ 194 (311)
..++|+|+ +-||+||||+|..++..+..
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~ 33 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLAR 33 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHH
Confidence 35788887 67999999999998887554
No 493
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.45 E-value=0.087 Score=43.90 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=20.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
.-.|.|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457889999999999999988763
No 494
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.44 E-value=0.2 Score=43.20 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=23.0
Q ss_pred CCeEEEEEe-ccCcchhHHHHHHHHHhhc
Q 042778 166 KDVYALGIW-GIGGIDRTTIARAIFNKIS 193 (311)
Q Consensus 166 ~~~~vi~I~-GmgGiGKTtLA~~v~~~~~ 193 (311)
...++|+|+ +-||+||||+|..++..+.
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la 53 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS 53 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH
Confidence 346788886 6799999999999998876
No 495
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.44 E-value=0.13 Score=41.60 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.5
Q ss_pred CeEEEEEeccCcchhHHHHHHHHH
Q 042778 167 DVYALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 167 ~~~vi~I~GmgGiGKTtLA~~v~~ 190 (311)
....|.|+|.+|+|||||...+..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 456789999999999999998854
No 496
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.43 E-value=0.11 Score=42.90 Aligned_cols=24 Identities=8% Similarity=0.281 Sum_probs=21.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 567899999999999999988764
No 497
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=91.43 E-value=0.11 Score=43.75 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHH
Q 042778 168 VYALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~ 190 (311)
.-.|||.|.-|.||||+++.+..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH
Confidence 55799999999999999998765
No 498
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.41 E-value=0.093 Score=42.91 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=20.1
Q ss_pred eEEEEEeccCcchhHHHHHHHHH
Q 042778 168 VYALGIWGIGGIDRTTIARAIFN 190 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~ 190 (311)
...|.|+|.+|+|||||...+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999998864
No 499
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.40 E-value=0.098 Score=50.60 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.4
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
-.+++|+|..|.|||||.+.+.-.
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998864
No 500
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.39 E-value=0.1 Score=42.84 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=20.9
Q ss_pred eEEEEEeccCcchhHHHHHHHHHh
Q 042778 168 VYALGIWGIGGIDRTTIARAIFNK 191 (311)
Q Consensus 168 ~~vi~I~GmgGiGKTtLA~~v~~~ 191 (311)
...|.|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999988874
Done!