BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042780
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3SZ85|PTRD1_BOVIN Putative peptidyl-tRNA hydrolase PTRHD1 OS=Bos taurus GN=PTRHD1
PE=2 SV=2
Length = 140
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 5/120 (4%)
Query: 6 DVLVQYVVLRRDLID---AWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHK 62
+LVQY+VLR+DL +WP G+VV Q CHA+ +A+ H+D PHT Y + + M K
Sbjct: 23 QILVQYLVLRKDLTQPPFSWPAGAVVAQACHAATAALHLHRDHPHTAAYL--RELERMRK 80
Query: 63 VTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
V LE ET + L+E L I HKLW+EQPENIPTC+A +PYPK VS KK +L K
Sbjct: 81 VVLEAPDETTLKLLAETLQQKNIDHKLWMEQPENIPTCIALRPYPKEEVSQYLKKFRLFK 140
>sp|Q6GMV3|PTRD1_HUMAN Putative peptidyl-tRNA hydrolase PTRHD1 OS=Homo sapiens GN=PTRHD1
PE=1 SV=1
Length = 140
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 75/120 (62%), Gaps = 5/120 (4%)
Query: 6 DVLVQYVVLRRDLIDA---WPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHK 62
VLVQY+VLR+DL A WP G++V Q CHA+ +A+ +H+D PHT Y Q + M K
Sbjct: 23 QVLVQYLVLRKDLSQAPFSWPAGALVAQACHAATAALHTHRDHPHTAAYL--QELGRMRK 80
Query: 63 VTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
V LE ET + L+E L I H LW+EQPENI TC+A +PYPK V KK +L K
Sbjct: 81 VVLEAPDETTLKELAETLQQKNIDHMLWLEQPENIATCIALRPYPKEEVGQYLKKFRLFK 140
>sp|D3Z4S3|PTRD1_MOUSE Putative peptidyl-tRNA hydrolase PTRHD1 OS=Mus musculus GN=Ptrhd1
PE=3 SV=1
Length = 140
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 75/120 (62%), Gaps = 5/120 (4%)
Query: 6 DVLVQYVVLRRDLIDA---WPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHK 62
+LVQY+VLR+DL A WP G++V Q CHA+ +A+ H+D PHT Y + + M K
Sbjct: 23 QILVQYLVLRKDLSQAPFSWPTGALVAQACHAATAALHLHRDHPHTAAYL--RELGRMRK 80
Query: 63 VTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
V LE ET + L+E L I H LW+EQPENI TC+A +PYPK VS KK +L K
Sbjct: 81 VVLEAADETTLKELAETLQQKNIDHTLWLEQPENIATCIALRPYPKEEVSQYLKKFRLFK 140
>sp|Q54ZD0|PTH2_DICDI Probable peptidyl-tRNA hydrolase 2 OS=Dictyostelium discoideum
GN=pth2 PE=3 SV=1
Length = 210
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 10 QYVVLRRDLIDAWPLGSVVTQGCHASVSAIW-SHKDDPHTLQYCSPQNINSMHKVTLEVK 68
Q +V+R DL G ++ Q CHAS+ A + KD L+ +N K+TL+
Sbjct: 98 QVLVIRTDL--GMTKGKIIAQCCHASLGARQKALKDSKKVLR--QWENFGCA-KITLKAN 152
Query: 69 GETQIVNLSEKLNAGGIAHKLWIEQ-----PENIPTCLATKPYPKSTVSLVFKKLKL 120
+ ++V+L K G+ L ++ P T LA P PK V V K LKL
Sbjct: 153 SKEELVDLRNKAKELGVVSYLVLDSGHTQIPSGSATVLAVGPAPKEAVDAVTKHLKL 209
>sp|A6USA3|PTH_METVS Peptidyl-tRNA hydrolase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=pth PE=3 SV=1
Length = 116
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 15/119 (12%)
Query: 10 QYVVLRRDLIDAWPLGSVVTQGCHASVSA-IWSHKDDPHTLQYCSPQNINSMHKVTLEVK 68
Q +V+R DL G + Q CHAS+ A + + K P + Y + KV L+V
Sbjct: 4 QAIVIRNDL--KMGKGKMAAQACHASIQAYLHAQKISPSAVMYWMNE---GQKKVVLKVN 58
Query: 69 GETQIVNLSEKLNAGGI-------AHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKL 120
E +++ + +N G+ A K IE P ++ T + P + +S V K LKL
Sbjct: 59 SEKELLEIFRDVNIDGLPCSLIRDAGKTQIE-PGSL-TAVGIGPEKEDKISKVTKNLKL 115
>sp|Q9J5H2|V029_FOWPN Putative peptidyl-tRNA hydrolase OS=Fowlpox virus (strain NVSL)
GN=FPV029 PE=3 SV=1
Length = 124
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 6 DVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTL 65
D+L V+R DL G +V+Q CH ++SA K ++ Y N K T+
Sbjct: 12 DMLKMVFVIRDDL--KMTKGEIVSQCCHGAISAY--EKSKKYSPDYLKRWLKNGQVKETV 67
Query: 66 EVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTC---LATKPYPKSTVSLVFKKLK 119
+V E +++++ E NA I +I Q + C L P P + + LK
Sbjct: 68 KVDNENEMMDIRE--NATAIGVNYYIVQNDKRQKCNTVLVIGPAPNYMFESLTRSLK 122
>sp|C6A1K8|PTH_THESM Peptidyl-tRNA hydrolase OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=pth PE=3 SV=1
Length = 118
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 10 QYVVLRRDLIDAWPLGSVVTQGCHASVSAIW-SHKDDPHTLQYCSPQNINSMHKVTLEVK 68
Q +++R DL G + Q H +V+A + ++K+ P + + KV ++ +
Sbjct: 6 QVMIVRSDL--KLSKGKLAVQVAHGAVTAAFKAYKEKPEWFKGWFNEG---QKKVVVKAE 60
Query: 69 GETQIVNLSEKLNAGGIAHKL-----WIEQPENIPTCLATKPYPKSTVSLVFKKLKLC 121
E ++ L + GI + L E P TCLA P P+ V+ + LKL
Sbjct: 61 SERELFELKAEAEKLGIPNSLIRDAGLTEIPPGTITCLAIGPGPEEIVNKITGNLKLV 118
>sp|A4FYL9|PTH_METM5 Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=pth PE=3 SV=1
Length = 116
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 10 QYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKG 69
Q +V+R DL G + Q CHAS+ A + H + N KV L+V
Sbjct: 4 QAIVIRNDL--KMGKGKMAAQACHASIQA-FLHAQKISSSAVSGWMN-EGQKKVVLKVNS 59
Query: 70 ETQIVNLSEKLNAGGI-------AHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKL 120
E +++ + + +N G+ A + IE P ++ T + P + +S V K LKL
Sbjct: 60 EKELLEIFKNVNIEGLPCSLIRDAGRTQIE-PGSL-TAVGIGPEKEEKISKVTKDLKL 115
>sp|P61234|PTH_METMP Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain S2 /
LL) GN=pth PE=3 SV=1
Length = 116
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 10 QYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKG 69
Q +V+R DL G + Q CHAS+ A + H + N KV L+V
Sbjct: 4 QAIVIRNDL--KMGKGKMAAQACHASIQA-FLHAQKISSSAVSGWMN-EGQKKVVLKVNS 59
Query: 70 ETQIVNLSEKLNAGGI-------AHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKL 120
E +++ + + +N G+ A + IE P ++ T + P + +S V K LKL
Sbjct: 60 EKELLEIFKNVNIEGLPCSLIRDAGRTQIE-PGSL-TAVGIGPEKEEKISKVKKDLKL 115
>sp|A6VJR3|PTH_METM7 Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=pth PE=3 SV=1
Length = 116
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 10 QYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKG 69
Q +V+R DL G + Q CHAS+ A + H + N KV L+V
Sbjct: 4 QAIVIRNDL--KMGKGKMAAQACHASIQA-FLHAQKISSSAVSGWMN-EGQKKVVLKVNS 59
Query: 70 ETQIVNLSEKLNAGGI-------AHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKL 120
E +++ + + +N G+ A + +E P ++ T + P + +S V K LKL
Sbjct: 60 EKELLEIFKNVNIEGLPCSLIRDAGRTQVE-PGSL-TAVGIGPEKEEKISKVTKDLKL 115
>sp|A9A6B6|PTH_METM6 Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=pth PE=3 SV=1
Length = 116
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 10 QYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKG 69
Q +V+R DL G + Q CHAS+ A + H + N KV L+V
Sbjct: 4 QAIVIRNDL--KMGKGKMAAQACHASLQA-FLHAQKISSSAVSGWMN-EGQKKVVLKVNS 59
Query: 70 ETQIVNLSEKLNAGGI-------AHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKL 120
E +++ + + +N G+ A + IE P ++ T + P + +S V K LKL
Sbjct: 60 EKELLEIFKNVNIEGLPCSLIRDAGRTQIE-PGSL-TAVGIGPEKEEKISKVTKDLKL 115
>sp|O27732|PTH_METTH Peptidyl-tRNA hydrolase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=pth PE=3 SV=1
Length = 112
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 12/116 (10%)
Query: 10 QYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKG 69
Q +++R DL G + Q CHAS+ + ++D + KV + V
Sbjct: 3 QVIIVRSDL--KMGKGKIAAQACHASIGSFKRTEEDK-----IRKWELEGSKKVIVSVNS 55
Query: 70 ETQIVNLSEKLNAGGIAHKLWIEQ-----PENIPTCLATKPYPKSTVSLVFKKLKL 120
+++ + + GI++ L + P TCL P + + LKL
Sbjct: 56 LDELLEIYRAVKEAGISNYLVRDAGHTQIPAGTITCLGIGPDDDEKIDKITGDLKL 111
>sp|Q9P2H5|UBP35_HUMAN Ubiquitin carboxyl-terminal hydrolase 35 OS=Homo sapiens GN=USP35
PE=1 SV=3
Length = 1018
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 44 DDPHTLQYCSPQNINSMHKVTLEVKGETQIVN-LSEKLNAGGIAHKLWIEQPENIPTCL- 101
D PH L +C Q + + + +GE V L + G+ +LW QP I CL
Sbjct: 157 DGPHRLLFCQ-QLVRCLGRFRCPAEGEEGAVEFLEQAQQVSGLLAQLWRAQPAAILPCLK 215
Query: 102 --------ATKPYPKSTVSLVFKKLKL 120
A + P S ++ V + L L
Sbjct: 216 ELFAVISCAEEEPPSSALASVVQHLPL 242
>sp|B6YTE3|PTH_THEON Peptidyl-tRNA hydrolase OS=Thermococcus onnurineus (strain NA1)
GN=pth PE=3 SV=1
Length = 118
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 11/118 (9%)
Query: 10 QYVVLRRDLIDAWPLGSVVTQGCHASVSAIWS-HKDDPHTLQYCSPQNINSMHKVTLEVK 68
Q +V+R+DL G + Q H +V+A K+ P ++ KV ++ +
Sbjct: 6 QVMVIRKDL--KLSKGKMAVQVAHGAVTAALKVQKEKP---EWFKAWFHEGQKKVVVKAE 60
Query: 69 GETQIVNLSEKLNAGGIAHKL-----WIEQPENIPTCLATKPYPKSTVSLVFKKLKLC 121
E ++ L GI L E P TCLA P P+ V V LKL
Sbjct: 61 NERELFELKAHAEKLGIPTALIRDAGLTEIPPGTITCLAVGPAPEELVDKVTGHLKLV 118
>sp|A8MBW8|PTH_CALMQ Peptidyl-tRNA hydrolase OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=pth PE=3
SV=1
Length = 120
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 9/118 (7%)
Query: 10 QYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKG 69
Q +V+R DL G + Q HA+VSA+ + + + K+ L V
Sbjct: 6 QSIVVRGDL--RMSRGKLAVQVAHAAVSAVLEALRNRG--DWVNAWVSGGQKKIVLVVDS 61
Query: 70 ETQIVNLSEKLNAGGIAHKL-----WIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122
++ L K + G+ L E P T LA P P+ V+ V LKL K
Sbjct: 62 VEDLIRLKAKAESLGLPTALIEDAGLTELPPGTVTALAIGPGPEELVNKVTGSLKLLK 119
>sp|O42237|SEM3E_CHICK Semaphorin-3E OS=Gallus gallus GN=SEMA3E PE=2 SV=1
Length = 785
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 57 INSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLV 114
++++ K+TLE+ E ++ + K I+HK+ NIP +KP+ K + L+
Sbjct: 666 VHTVRKITLEIVEEERVDEMFSKDYEEEISHKMPCPMQSNIPQ--VSKPWYKEFLQLI 721
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,235,394
Number of Sequences: 539616
Number of extensions: 1689906
Number of successful extensions: 3495
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3484
Number of HSP's gapped (non-prelim): 19
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)