Query 042780
Match_columns 122
No_of_seqs 121 out of 506
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 09:22:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02429 PTH2_like Peptidyl-tRN 100.0 3.2E-47 6.8E-52 272.4 11.9 111 8-121 1-116 (116)
2 TIGR00283 arch_pth2 peptidyl-t 100.0 4.9E-45 1.1E-49 260.6 12.5 108 8-121 1-115 (115)
3 PF01981 PTH2: Peptidyl-tRNA h 100.0 1.5E-44 3.2E-49 256.6 8.6 109 7-121 1-116 (116)
4 cd02430 PTH2 Peptidyl-tRNA hyd 100.0 9.3E-44 2E-48 253.9 12.1 108 8-121 1-115 (115)
5 cd02407 PTH2_family Peptidyl-t 100.0 1.2E-43 2.7E-48 253.1 12.5 108 8-121 1-115 (115)
6 PRK04322 peptidyl-tRNA hydrola 100.0 1.8E-43 3.9E-48 251.8 11.4 106 10-121 1-113 (113)
7 KOG3282 Uncharacterized conser 100.0 3.5E-42 7.6E-47 261.6 12.1 112 4-121 72-190 (190)
8 COG1990 pth2 Peptidyl-tRNA hyd 100.0 1.3E-40 2.9E-45 238.7 7.3 111 5-121 3-122 (122)
9 KOG3305 Uncharacterized conser 100.0 2.7E-35 5.9E-40 205.5 4.6 118 5-122 1-120 (121)
10 PF09391 DUF2000: Protein of u 98.7 1E-07 2.2E-12 69.7 7.9 108 7-122 1-133 (133)
11 COG4954 Uncharacterized protei 96.5 0.012 2.6E-07 42.3 6.3 108 8-120 4-133 (135)
12 PF11823 DUF3343: Protein of u 88.5 2.2 4.8E-05 27.4 5.8 59 60-118 1-62 (73)
13 TIGR00179 murB UDP-N-acetyleno 75.7 6.2 0.00014 31.8 4.9 36 55-90 7-42 (284)
14 PRK14652 UDP-N-acetylenolpyruv 74.8 7.1 0.00015 31.9 5.1 46 44-90 20-65 (302)
15 PF12687 DUF3801: Protein of u 73.5 20 0.00044 27.7 7.1 67 45-117 21-89 (204)
16 PRK14649 UDP-N-acetylenolpyruv 71.9 9 0.00019 31.1 5.0 44 46-90 7-50 (295)
17 PRK13906 murB UDP-N-acetylenol 69.9 12 0.00027 30.5 5.4 45 45-90 22-66 (307)
18 PRK12436 UDP-N-acetylenolpyruv 68.1 14 0.0003 30.1 5.4 45 45-90 22-66 (305)
19 PF05036 SPOR: Sporulation rel 67.7 11 0.00025 22.9 3.8 54 66-119 11-65 (76)
20 PRK14653 UDP-N-acetylenolpyruv 67.4 16 0.00036 29.8 5.6 45 44-90 18-62 (297)
21 PRK13905 murB UDP-N-acetylenol 67.3 13 0.00029 29.9 5.1 45 45-90 16-60 (298)
22 PRK00046 murB UDP-N-acetylenol 65.9 14 0.00031 30.8 5.0 43 47-90 8-50 (334)
23 PRK13903 murB UDP-N-acetylenol 65.3 15 0.00032 31.0 5.1 47 43-90 16-62 (363)
24 cd04885 ACT_ThrD-I Tandem C-te 64.6 13 0.00028 23.1 3.6 30 58-87 37-66 (68)
25 cd07241 Glo_EDI_BRP_like_3 Thi 63.9 37 0.0008 22.0 6.4 31 58-88 69-99 (125)
26 PRK14650 UDP-N-acetylenolpyruv 62.7 17 0.00037 29.9 4.9 43 47-90 20-62 (302)
27 PRK14648 UDP-N-acetylenolpyruv 61.1 18 0.00039 30.6 4.9 46 44-90 14-59 (354)
28 PF09413 DUF2007: Domain of un 60.4 21 0.00046 22.0 4.1 32 62-93 1-32 (67)
29 PRK11633 cell division protein 59.6 16 0.00035 29.0 4.1 57 62-118 149-210 (226)
30 PF14026 DUF4242: Protein of u 57.6 51 0.0011 21.5 6.3 41 48-93 37-77 (77)
31 PF02829 3H: 3H domain; Inter 56.3 17 0.00037 25.2 3.3 29 58-86 69-97 (98)
32 PF01565 FAD_binding_4: FAD bi 55.4 26 0.00056 24.2 4.2 29 62-90 2-30 (139)
33 cd08346 PcpA_N_like N-terminal 54.7 28 0.0006 22.5 4.1 31 58-88 72-102 (126)
34 cd04906 ACT_ThrD-I_1 First of 54.0 33 0.00071 22.3 4.3 32 58-89 39-71 (85)
35 cd07242 Glo_EDI_BRP_like_6 Thi 49.6 65 0.0014 21.2 5.4 32 58-89 67-98 (128)
36 PF15608 PELOTA_1: PELOTA RNA 49.1 51 0.0011 23.1 4.8 40 61-103 57-96 (100)
37 cd08360 MhqB_like_C C-terminal 49.1 39 0.00084 23.1 4.3 31 58-88 61-91 (134)
38 cd08362 BphC5-RrK37_N_like N-t 48.7 45 0.00097 21.6 4.4 29 59-87 58-86 (120)
39 COG1206 Gid NAD(FAD)-utilizing 48.7 34 0.00074 29.5 4.6 26 92-117 125-154 (439)
40 cd07255 Glo_EDI_BRP_like_12 Th 48.4 42 0.00091 21.9 4.3 30 58-87 63-92 (125)
41 cd08347 PcpA_C_like C-terminal 47.3 1E+02 0.0022 22.0 7.5 63 58-120 64-139 (157)
42 cd04886 ACT_ThrD-II-like C-ter 45.7 48 0.001 19.4 3.9 26 62-87 46-71 (73)
43 PF08722 Tn7_Tnp_TnsA_N: TnsA 45.6 20 0.00043 23.4 2.2 35 58-92 45-88 (88)
44 PF02426 MIase: Muconolactone 45.3 96 0.0021 21.2 5.6 84 10-108 1-89 (91)
45 COG5440 Uncharacterized conser 45.2 22 0.00048 27.0 2.6 49 45-111 7-55 (161)
46 cd08361 PpCmtC_N N-terminal do 44.8 94 0.002 20.8 7.0 30 58-87 58-87 (124)
47 COG0812 MurB UDP-N-acetylmuram 44.4 46 0.001 27.5 4.6 42 48-90 9-50 (291)
48 cd06819 PLPDE_III_LS_D-TA Type 43.1 67 0.0015 25.9 5.4 37 63-99 102-138 (358)
49 PRK06724 hypothetical protein; 43.0 47 0.001 23.1 4.0 29 59-87 63-91 (128)
50 KOG1710 MYND Zn-finger and ank 42.7 65 0.0014 27.3 5.3 27 14-42 103-134 (396)
51 cd07240 ED_TypeI_classII_N N-t 42.5 90 0.0019 19.9 6.0 31 58-88 56-86 (117)
52 cd06820 PLPDE_III_LS_D-TA_like 41.0 79 0.0017 25.5 5.5 36 62-97 97-132 (353)
53 cd07265 2_3_CTD_N N-terminal d 40.8 80 0.0017 20.7 4.7 31 58-88 60-90 (122)
54 cd07258 PpCmtC_C C-terminal do 39.6 67 0.0015 22.6 4.4 30 58-87 55-84 (141)
55 cd06808 PLPDE_III Type III Pyr 39.4 69 0.0015 23.3 4.6 34 63-96 83-116 (211)
56 cd04890 ACT_AK-like_1 ACT doma 39.1 57 0.0012 19.3 3.5 48 71-119 15-62 (62)
57 cd06812 PLPDE_III_DSD_D-TA_lik 38.7 90 0.002 25.4 5.6 43 62-105 100-142 (374)
58 cd07261 Glo_EDI_BRP_like_11 Th 38.7 1.1E+02 0.0023 19.7 5.0 31 58-88 58-88 (114)
59 cd08354 Glo_EDI_BRP_like_13 Th 38.4 1.1E+02 0.0023 19.7 6.0 47 58-105 66-112 (122)
60 PF01168 Ala_racemase_N: Alani 38.2 71 0.0015 23.7 4.5 37 62-98 86-122 (218)
61 PF03129 HGTP_anticodon: Antic 37.8 28 0.00062 22.4 2.0 41 63-104 32-75 (94)
62 cd06821 PLPDE_III_D-TA Type II 37.8 93 0.002 25.2 5.5 43 62-105 104-146 (361)
63 cd07239 BphC5-RK37_C_like C-te 37.5 75 0.0016 22.3 4.4 31 58-88 58-88 (144)
64 TIGR00044 pyridoxal phosphate 36.6 45 0.00098 25.7 3.3 45 61-105 95-140 (229)
65 COG5304 Uncharacterized protei 36.6 40 0.00086 23.4 2.6 30 58-88 49-78 (92)
66 PRK14433 acylphosphatase; Prov 36.4 39 0.00085 22.5 2.6 42 48-92 29-70 (87)
67 PF06983 3-dmu-9_3-mt: 3-demet 35.9 55 0.0012 22.7 3.4 28 58-85 70-97 (116)
68 KOG2599 Pyridoxal/pyridoxine/p 35.7 97 0.0021 25.8 5.2 39 66-105 162-204 (308)
69 PF02624 YcaO: YcaO-like famil 35.5 93 0.002 24.6 5.1 55 47-104 137-193 (332)
70 cd07262 Glo_EDI_BRP_like_19 Th 35.3 70 0.0015 20.9 3.7 28 60-87 65-92 (123)
71 cd02193 PurL Formylglycinamide 34.6 60 0.0013 25.5 3.8 38 48-90 232-269 (272)
72 PRK10927 essential cell divisi 34.6 52 0.0011 27.6 3.5 56 61-119 246-305 (319)
73 PRK10637 cysG siroheme synthas 34.2 39 0.00083 28.9 2.8 19 94-112 214-232 (457)
74 PHA01748 hypothetical protein 34.1 1E+02 0.0022 19.2 4.1 27 59-86 1-27 (60)
75 cd09012 Glo_EDI_BRP_like_24 Th 34.1 1.1E+02 0.0024 20.1 4.6 27 61-87 70-96 (124)
76 cd09014 BphC-JF8_C_like C-term 34.1 67 0.0014 23.1 3.7 29 59-87 69-97 (166)
77 TIGR03213 23dbph12diox 2,3-dih 33.0 63 0.0014 25.1 3.6 30 59-88 58-87 (286)
78 cd07254 Glo_EDI_BRP_like_20 Th 32.9 1E+02 0.0023 20.0 4.3 29 59-87 58-86 (120)
79 cd07243 2_3_CTD_C C-terminal d 32.9 1E+02 0.0023 21.5 4.5 31 58-88 66-96 (143)
80 PRK12338 hypothetical protein; 32.6 73 0.0016 26.5 4.1 30 58-87 284-313 (319)
81 cd07252 BphC1-RGP6_N_like N-te 32.3 1.5E+02 0.0032 19.5 6.5 30 59-88 57-86 (120)
82 COG3147 DedD Uncharacterized p 32.3 93 0.002 24.9 4.4 42 67-108 159-201 (226)
83 cd08343 ED_TypeI_classII_C C-t 32.2 1.1E+02 0.0023 20.6 4.3 30 58-87 58-87 (131)
84 cd07376 PLPDE_III_DSD_D-TA_lik 32.2 1.3E+02 0.0029 24.1 5.5 44 61-105 86-129 (345)
85 cd07237 BphC1-RGP6_C_like C-te 31.9 95 0.0021 21.9 4.2 30 58-87 72-101 (154)
86 PRK00907 hypothetical protein; 31.8 81 0.0018 21.6 3.6 25 61-85 63-87 (92)
87 cd07266 HPCD_N_class_II N-term 31.6 1.5E+02 0.0032 19.2 4.8 30 59-88 60-89 (121)
88 cd07235 MRD Mitomycin C resist 30.9 1.2E+02 0.0026 19.7 4.3 29 59-87 66-94 (122)
89 PRK00341 hypothetical protein; 30.8 87 0.0019 21.2 3.6 25 61-85 62-86 (91)
90 cd07257 THT_oxygenase_C The C- 30.7 1.1E+02 0.0024 21.5 4.4 31 58-88 66-96 (153)
91 PRK12856 hypothetical protein; 30.4 1.1E+02 0.0024 21.3 4.2 37 70-106 59-100 (103)
92 PRK02047 hypothetical protein; 30.2 82 0.0018 21.2 3.4 23 62-84 63-85 (91)
93 PLN02625 uroporphyrin-III C-me 29.9 30 0.00065 27.2 1.3 19 94-112 13-31 (263)
94 PRK00967 hypothetical protein; 29.4 1.5E+02 0.0032 20.6 4.7 37 70-106 59-100 (105)
95 TIGR01678 FAD_lactone_ox sugar 29.3 1.2E+02 0.0026 26.0 4.9 33 58-90 12-44 (438)
96 PRK12855 hypothetical protein; 29.3 1.2E+02 0.0027 21.1 4.2 37 70-106 59-100 (103)
97 cd00430 PLPDE_III_AR Type III 28.6 1.3E+02 0.0029 24.4 5.0 43 62-105 94-136 (367)
98 PRK13340 alanine racemase; Rev 28.5 1.2E+02 0.0025 25.5 4.7 45 63-108 134-179 (406)
99 cd01473 vWA_CTRP CTRP for CS 28.3 93 0.002 23.2 3.8 34 72-116 127-160 (192)
100 TIGR03213 23dbph12diox 2,3-dih 27.9 2.8E+02 0.006 21.5 6.5 28 58-85 205-232 (286)
101 TIGR00789 flhB_rel flhB C-term 27.7 1.9E+02 0.0041 19.2 4.8 31 57-88 14-44 (82)
102 PF11294 DUF3095: Protein of u 27.6 1.7E+02 0.0037 25.0 5.5 55 57-111 298-354 (373)
103 cd00858 GlyRS_anticodon GlyRS 27.5 1.2E+02 0.0025 20.8 3.9 37 71-107 64-103 (121)
104 PF13121 DUF3976: Domain of un 27.3 37 0.00079 19.9 1.0 9 10-18 1-9 (41)
105 cd07256 HPCD_C_class_II C-term 27.2 1.4E+02 0.0029 21.3 4.3 29 58-86 62-90 (161)
106 PRK11675 LexA regulated protei 27.2 1.5E+02 0.0032 20.4 4.2 29 58-87 48-76 (90)
107 cd09013 BphC-JF8_N_like N-term 26.9 1.9E+02 0.004 18.9 5.7 30 58-87 61-90 (121)
108 cd00861 ProRS_anticodon_short 26.9 73 0.0016 20.2 2.6 34 71-104 41-77 (94)
109 PF10903 DUF2691: Protein of u 26.8 1.9E+02 0.004 21.8 5.0 40 63-102 113-152 (153)
110 PRK07334 threonine dehydratase 26.8 1.1E+02 0.0024 25.6 4.3 30 61-90 373-402 (403)
111 PF06877 RraB: Regulator of ri 26.7 50 0.0011 22.0 1.8 54 65-118 30-88 (104)
112 PTZ00413 lipoate synthase; Pro 26.7 1.3E+02 0.0029 26.0 4.7 24 68-91 177-200 (398)
113 smart00706 TECPR Beta propelle 25.9 67 0.0014 17.2 2.0 16 90-106 3-18 (35)
114 PF03793 PASTA: PASTA domain; 25.8 1.5E+02 0.0033 17.5 4.3 40 72-113 10-53 (63)
115 PRK04998 hypothetical protein; 25.7 1E+02 0.0023 20.5 3.2 23 62-84 60-82 (88)
116 PTZ00445 p36-lilke protein; Pr 25.0 1.3E+02 0.0027 24.0 4.0 40 63-104 72-117 (219)
117 PTZ00222 60S ribosomal protein 24.9 2.6E+02 0.0057 22.9 5.9 58 58-115 146-216 (263)
118 cd08345 Fosfomycin_RP Fosfomyc 24.8 1.2E+02 0.0027 19.2 3.5 29 58-87 54-82 (113)
119 cd06813 PLPDE_III_DSD_D-TA_lik 24.7 2E+02 0.0043 23.9 5.4 42 61-103 104-145 (388)
120 PRK10057 rpsV 30S ribosomal su 24.7 53 0.0012 19.6 1.4 14 57-70 17-30 (44)
121 cd00860 ThrRS_anticodon ThrRS 24.5 1.6E+02 0.0034 18.3 3.9 38 71-108 38-78 (91)
122 cd04887 ACT_MalLac-Enz ACT_Mal 24.2 1.2E+02 0.0027 18.3 3.2 23 60-82 41-63 (74)
123 cd06824 PLPDE_III_Yggs_like Py 24.0 1.8E+02 0.0039 22.1 4.7 45 61-105 93-138 (224)
124 cd08363 FosB FosB, a fosfomyci 23.9 2E+02 0.0043 19.5 4.6 47 58-105 58-105 (131)
125 PF07997 DUF1694: Protein of u 23.9 2.2E+02 0.0048 20.2 4.8 46 59-104 62-108 (120)
126 PF00903 Glyoxalase: Glyoxalas 22.5 2.1E+02 0.0045 18.1 4.2 30 60-89 74-103 (128)
127 cd00635 PLPDE_III_YBL036c_like 22.5 2E+02 0.0043 21.7 4.6 44 62-105 92-136 (222)
128 cd06810 PLPDE_III_ODC_DapDC_li 22.4 1.8E+02 0.004 23.4 4.7 35 63-97 93-127 (368)
129 cd00738 HGTP_anticodon HGTP an 22.4 1.4E+02 0.0029 18.7 3.2 36 71-106 41-79 (94)
130 PF04359 DUF493: Protein of un 22.1 1.1E+02 0.0024 19.9 2.8 22 62-83 57-78 (85)
131 PRK14422 acylphosphatase; Prov 22.0 99 0.0022 20.8 2.6 43 48-93 34-76 (93)
132 PRK14426 acylphosphatase; Prov 21.9 92 0.002 20.8 2.4 43 48-92 32-74 (92)
133 PF02373 JmjC: JmjC domain, hy 21.7 1.5E+02 0.0032 19.3 3.4 13 80-92 73-85 (114)
134 PF09840 DUF2067: Uncharacteri 21.6 2.5E+02 0.0055 21.5 5.1 42 63-104 1-42 (190)
135 TIGR02295 HpaD 3,4-dihydroxyph 21.5 1.9E+02 0.004 22.4 4.4 31 58-88 59-89 (294)
136 cd02650 nuc_hydro_CaPnhB NH_hy 21.4 97 0.0021 24.8 2.9 29 68-107 98-126 (304)
137 PRK14440 acylphosphatase; Prov 21.3 1E+02 0.0022 20.6 2.5 42 48-92 31-72 (90)
138 PF11869 DUF3389: Protein of u 21.3 1.7E+02 0.0036 19.6 3.4 23 58-80 48-70 (75)
139 cd04907 ACT_ThrD-I_2 Second of 21.3 2.5E+02 0.0053 18.3 4.5 32 58-90 40-71 (81)
140 cd06818 PLPDE_III_cryptic_DSD 21.3 2.6E+02 0.0056 23.1 5.4 38 61-98 99-136 (382)
141 cd08364 FosX FosX, a fosfomyci 21.2 2.4E+02 0.0053 19.0 4.5 27 60-87 67-93 (131)
142 TIGR00492 alr alanine racemase 21.0 2.1E+02 0.0046 23.3 4.8 43 62-105 95-137 (367)
143 cd01480 vWA_collagen_alpha_1-V 20.5 1.5E+02 0.0033 21.6 3.6 33 72-115 128-160 (186)
144 PF13291 ACT_4: ACT domain; PD 20.5 1.2E+02 0.0025 19.0 2.6 26 58-83 47-72 (80)
145 PRK14425 acylphosphatase; Prov 20.4 98 0.0021 20.9 2.3 42 48-92 34-75 (94)
146 TIGR02295 HpaD 3,4-dihydroxyph 20.0 4.1E+02 0.0089 20.4 7.1 28 59-86 196-223 (294)
No 1
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=100.00 E-value=3.2e-47 Score=272.36 Aligned_cols=111 Identities=59% Similarity=0.912 Sum_probs=103.0
Q ss_pred eEEEEEEeCCC----CCCCCcchHHHhHHHHHHHHHHHhcCChhH-hhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHH
Q 042780 8 LVQYVVLRRDL----IDAWPLGSVVTQGCHASVSAIWSHKDDPHT-LQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNA 82 (122)
Q Consensus 8 ~kmvivVR~DL----~m~w~~GkiaAQ~~HAa~~~~~~~~~~~~~-~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~ 82 (122)
+.||||||+|| +| |+||++|||||||+++|+.+++++.+ ++|+- ++++||+||||+|+||++|.+|.++|++
T Consensus 1 ~vq~ivVR~DL~~~~~m--~kGkiaAQ~aHAav~a~~~~~~~~~~~~~~~~-~~~~g~~KVVLkv~~e~eL~~L~~~a~~ 77 (116)
T cd02429 1 LVQYVILRRDLQTKLSW--PLGAVIAQACHAAVAVIHLFRSDPDTKKYAYL-SNLDNMHKVVLEVPDEAALKNLSSKLTE 77 (116)
T ss_pred CEEEEEEeccccccCCC--CccHHHHHHHHHHHHHHHHHhhCchHHHHHHH-HHhCCCceEEEEeCCHHHHHHHHHHHHH
Confidence 58999999999 88 99999999999999999888887765 55632 3448999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780 83 GGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLC 121 (122)
Q Consensus 83 ~gi~~~l~~e~~~gt~TvlaigP~~~~~i~~itg~LkLl 121 (122)
.||+|++|+|+||||.|||||||+|++.||++|||||||
T Consensus 78 ~gi~~~l~te~p~gt~T~LaigP~~~~~id~it~~LkLl 116 (116)
T cd02429 78 NSIKHKLWIEQPENIPTCIALKPYPKETVASYLKKLKLL 116 (116)
T ss_pred cCCCeEEEEEcCCCCceEEEeCCCCHHHHHHHhCCCcCC
Confidence 999999999999999999999999999999999999997
No 2
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=100.00 E-value=4.9e-45 Score=260.58 Aligned_cols=108 Identities=21% Similarity=0.352 Sum_probs=101.9
Q ss_pred eEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHh-cCChhH-hhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCC
Q 042780 8 LVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSH-KDDPHT-LQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGI 85 (122)
Q Consensus 8 ~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~-~~~~~~-~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi 85 (122)
+||||+||+||+| |+||+||||||||+++|... ++++.+ ++|++ .||+||||+++|+++|++|.++|++.|+
T Consensus 1 ~k~vlvVr~DL~M--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~----~G~~KVvlk~~~~~el~~l~~~a~~~~l 74 (115)
T TIGR00283 1 MKMVIVIRDDLGM--GKGKIAAQVCHAAIIGFLKSKRKNPSLRRKWLD----EGQKKVVLKVNSLEELLEIYHKAESLGL 74 (115)
T ss_pred CeEEEEEeCCCCC--ChhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 6999999999999 99999999999999999765 455554 89998 9999999999999999999999999999
Q ss_pred CeEEE-----EEeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780 86 AHKLW-----IEQPENIPTCLATKPYPKSTVSLVFKKLKLC 121 (122)
Q Consensus 86 ~~~l~-----~e~~~gt~TvlaigP~~~~~i~~itg~LkLl 121 (122)
++++| +|+||||.|||||||+|++.||+||||||||
T Consensus 75 ~~~~v~DAG~Tei~pgs~TvlaigP~~~~~id~itg~LkLl 115 (115)
T TIGR00283 75 VTGLIRDAGHTQIPPGTITAVGIGPDEDEKIDKITGDLKLL 115 (115)
T ss_pred CEEEEEcCCcceeCCCCcEEEEECCCCHHHHHHHhCCCccC
Confidence 99999 5999999999999999999999999999997
No 3
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=100.00 E-value=1.5e-44 Score=256.65 Aligned_cols=109 Identities=30% Similarity=0.412 Sum_probs=99.6
Q ss_pred eeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhc--CChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCC
Q 042780 7 VLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHK--DDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGG 84 (122)
Q Consensus 7 ~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~--~~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~g 84 (122)
++|||||||+||+| |+||++|||||||+++|..+. +.+.+.+|.. .||+||||+++|+++|++|.++|++.|
T Consensus 1 ~~k~vivVr~DL~m--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~----~g~~Kivlkv~~e~~L~~l~~~a~~~g 74 (116)
T PF01981_consen 1 ELKMVIVVRKDLKM--SKGKIAAQCAHAAVAAYAKLHEDDPEWLREWEN----NGQKKIVLKVPSEEELLELAKKAKEAG 74 (116)
T ss_dssp SEEEEEEEESSSSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTTSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CeEEEEEEECCCCC--CcchHHHHHHHHHHHHHHHhhhcCHHHHHHHhc----CCCceEEEEeCCHHHHHHHHHHHHHCC
Confidence 58999999999999 999999999999999998873 2345678887 999999999999999999999999999
Q ss_pred CCeEEEE-----EeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780 85 IAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKLC 121 (122)
Q Consensus 85 i~~~l~~-----e~~~gt~TvlaigP~~~~~i~~itg~LkLl 121 (122)
+++++|+ |+||||.|||||||+|++.||+||||||||
T Consensus 75 l~~~~i~Dag~Tei~pgs~TvlaigP~~~~~i~~it~~LkL~ 116 (116)
T PF01981_consen 75 LPHYLIRDAGRTEIPPGSVTVLAIGPAPKEEIDKITGHLKLL 116 (116)
T ss_dssp -SEEEEEETSSSSSSTTCEEEEEEEEEEHHHHHHHHTTSEB-
T ss_pred CCEEEEEECCCCcCCCCCeEEEEECcCCHHHHHHHhCcCcCC
Confidence 9999998 899999999999999999999999999997
No 4
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=100.00 E-value=9.3e-44 Score=253.94 Aligned_cols=108 Identities=25% Similarity=0.343 Sum_probs=101.2
Q ss_pred eEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHh-cCChh-HhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCC
Q 042780 8 LVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSH-KDDPH-TLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGI 85 (122)
Q Consensus 8 ~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~-~~~~~-~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi 85 (122)
+||||+||+||+| |+||++|||||||+++|... ++++. +++|.+ .||+||||+++|+++|.+|.++|++.||
T Consensus 1 ~K~vivVr~DL~m--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~----~G~~KiVl~~~~~~el~~l~~~a~~~~l 74 (115)
T cd02430 1 YKMVLVVRNDLKM--GKGKIAAQCAHAALGAYKKAMKSNPELLRAWER----EGQKKIVLKVNSEEELLELKKKAKSLGL 74 (115)
T ss_pred CEEEEEEeCCCCC--CcchHHHHHHHHHHHHHHHHHhcCHHHHHHHHh----cCCcEEEEecCCHHHHHHHHHHHHHcCC
Confidence 6999999999999 99999999999999999765 45554 577887 9999999999999999999999999999
Q ss_pred CeEEE-----EEeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780 86 AHKLW-----IEQPENIPTCLATKPYPKSTVSLVFKKLKLC 121 (122)
Q Consensus 86 ~~~l~-----~e~~~gt~TvlaigP~~~~~i~~itg~LkLl 121 (122)
++++| +|+||||.||||+||+|++.||+||||||||
T Consensus 75 ~~~~v~DAG~Tev~~gt~T~laigP~~~~~i~~itg~LkL~ 115 (115)
T cd02430 75 PTSLIQDAGRTQIAPGTITVLGIGPAPEELIDKVTGHLKLL 115 (115)
T ss_pred CeEEEEeCCCcccCCCCceEEEeCCCCHHHHHHhhCCCcCC
Confidence 99999 4999999999999999999999999999997
No 5
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=100.00 E-value=1.2e-43 Score=253.15 Aligned_cols=108 Identities=31% Similarity=0.413 Sum_probs=101.3
Q ss_pred eEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhcCCh--hHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCC
Q 042780 8 LVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDP--HTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGI 85 (122)
Q Consensus 8 ~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~~~~--~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi 85 (122)
+||||+||+||+| |+||++|||||||+++|..+++++ .+.+|.. .||+||||+++|+++|++|.++|++.||
T Consensus 1 ~k~vivVr~dl~m--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~----~g~~KvVl~v~~~~~l~~l~~~a~~~gl 74 (115)
T cd02407 1 YKMVIVVRNDLKM--GKGKIAAQCAHAALAAYKKAMKDPPTLLRAWEL----EGQKKVVLKVPSEEELLELAKKAKELGL 74 (115)
T ss_pred CEEEEEEECCCCC--ChhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHh----CCCcEEEEECCCHHHHHHHHHHHHHcCC
Confidence 6999999999999 999999999999999999886543 3566776 9999999999999999999999999999
Q ss_pred CeEEEE-----EeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780 86 AHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKLC 121 (122)
Q Consensus 86 ~~~l~~-----e~~~gt~TvlaigP~~~~~i~~itg~LkLl 121 (122)
++++|+ |+||||.|||||||+|++.||+||||||||
T Consensus 75 ~~~~v~DAG~Tqi~~gt~TvlaigP~~~~~i~~itg~LkL~ 115 (115)
T cd02407 75 PHSLIQDAGRTQIPPGTPTVLAIGPAPKEKVDKVTGHLKLL 115 (115)
T ss_pred CeEEEEECCCcccCCCCceEEEECCCCHHHHHHHcCcCcCC
Confidence 999998 599999999999999999999999999997
No 6
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=100.00 E-value=1.8e-43 Score=251.80 Aligned_cols=106 Identities=29% Similarity=0.384 Sum_probs=98.9
Q ss_pred EEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHh-cCCh-hHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 10 QYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSH-KDDP-HTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 10 mvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~-~~~~-~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
|||+||+||+| |+||++|||||||+++|... ++++ .+++|.. .||+||||+++|+++|++|.++|++.||++
T Consensus 1 ~vivVr~DL~M--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~----~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~ 74 (113)
T PRK04322 1 QVIVVRTDLKM--GKGKLAAQVAHAAVSAYEKADKSNREWLEEWLN----EGQKKVVLKVNSEEELLELKEKAERLGLPT 74 (113)
T ss_pred CEEEEeCCCCC--CcchHHHHHHHHHHHHHHHHHhcCHHHHHHHHH----CCCcEEEEeCCCHHHHHHHHHHHHHcCCCE
Confidence 89999999999 99999999999999999665 4444 3467776 999999999999999999999999999999
Q ss_pred EEE-----EEeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780 88 KLW-----IEQPENIPTCLATKPYPKSTVSLVFKKLKLC 121 (122)
Q Consensus 88 ~l~-----~e~~~gt~TvlaigP~~~~~i~~itg~LkLl 121 (122)
++| +|+||||.|||||||+|++.||+||||||||
T Consensus 75 ~~v~DAG~Tei~~gs~TvlaigP~~~~~i~~itg~LkLl 113 (113)
T PRK04322 75 ALIRDAGLTQLPPGTVTALGIGPAPEEKIDKITGDLKLL 113 (113)
T ss_pred EEEEeCCCcccCCCCcEEEEeCCCCHHHHHHhhCCCcCC
Confidence 999 5999999999999999999999999999997
No 7
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.5e-42 Score=261.59 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=106.1
Q ss_pred CCceeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHh-cCCh-hHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHH
Q 042780 4 NGDVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSH-KDDP-HTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLN 81 (122)
Q Consensus 4 ~~~~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~-~~~~-~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~ 81 (122)
..+++||+||||+||+| ++||||||||||++++|+++ +.+| .+++|.+ .||.|||||++||++|.+|++.|+
T Consensus 72 ~~~~~KMvLVVR~DLkM--gkGKIAAQc~HAalg~Y~~l~~~~p~ll~~We~----~GQ~KIvvk~~~e~~l~~l~~~A~ 145 (190)
T KOG3282|consen 72 LKGNFKMVLVVRNDLKM--GKGKIAAQCAHAALGVYKHLMQRDPELLRRWEN----CGQAKIVVKAESEEELMELQKDAK 145 (190)
T ss_pred cCCceEEEEEEeccCCC--ccchhHHHHHHHHHHHHHHHHHhCHHHHHHHHH----cCCceEEEEcCCHHHHHHHHHHHH
Confidence 45669999999999999 99999999999999999998 4555 5799999 999999999999999999999999
Q ss_pred HCCCCeEEEE-----EeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780 82 AGGIAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKLC 121 (122)
Q Consensus 82 ~~gi~~~l~~-----e~~~gt~TvlaigP~~~~~i~~itg~LkLl 121 (122)
..|++++++. ||+|||.||++|||+|.+.||+||||||||
T Consensus 146 ~~gl~t~~i~DAGrTQIa~gS~TVl~Igpg~~~~id~VTG~LKL~ 190 (190)
T KOG3282|consen 146 KLGLYTHLIQDAGRTQIAPGSRTVLGIGPGPVEVIDSVTGHLKLY 190 (190)
T ss_pred HcCCcEEEEEcCCccccCCCCeEEEEEcCccHHHHhhcCcceeeC
Confidence 9999999997 999999999999999999999999999997
No 8
>COG1990 pth2 Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-40 Score=238.68 Aligned_cols=111 Identities=23% Similarity=0.277 Sum_probs=103.0
Q ss_pred CceeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhcCCh----hHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHH
Q 042780 5 GDVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDP----HTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKL 80 (122)
Q Consensus 5 ~~~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~~~~----~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a 80 (122)
...+||+|+||+||+| ++||++||||||++.++....+.. .+++|++ .||+||||||+|+++|+++.++|
T Consensus 3 ~~~~k~vIvVr~Dl~m--~kGKiaaQvaHaa~~~~~~~~~~~~~~~~~~eWl~----~Gq~Kivlkv~~~~eL~~~~~~A 76 (122)
T COG1990 3 RGQYKMVIVVRDDLKM--SKGKLAAQVAHAAVDAAKLAIKSTELDEWLDEWLR----EGQKKIVLKVGSLDELLELHQKA 76 (122)
T ss_pred cccceeEEEEeccccc--ccchHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH----cCCceEEEEcCCHHHHHHHHHHH
Confidence 3468999999999999 999999999999999998875433 4567776 99999999999999999999999
Q ss_pred HHCCCCeEEEE-----EeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780 81 NAGGIAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKLC 121 (122)
Q Consensus 81 ~~~gi~~~l~~-----e~~~gt~TvlaigP~~~~~i~~itg~LkLl 121 (122)
+..|+++++++ |+||||+|||++||+|++.+|+|||+||||
T Consensus 77 ~~~gl~~~~i~DaG~TqippGt~T~L~iGP~~~~~iD~iTG~lkL~ 122 (122)
T COG1990 77 ESLGLPTALIRDAGRTQIPPGTITVLGIGPAPEEVIDKITGDLKLL 122 (122)
T ss_pred HHcCChHHHHHhcCccccCCCCeEEEEECCCchhhhcccccccccC
Confidence 99999999996 999999999999999999999999999997
No 9
>KOG3305 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.7e-35 Score=205.52 Aligned_cols=118 Identities=68% Similarity=1.163 Sum_probs=113.9
Q ss_pred CceeEEEEEEeCCCCCC--CCcchHHHhHHHHHHHHHHHhcCChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHH
Q 042780 5 GDVLVQYVVLRRDLIDA--WPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNA 82 (122)
Q Consensus 5 ~~~~kmvivVR~DL~m~--w~~GkiaAQ~~HAa~~~~~~~~~~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~ 82 (122)
++.++||||+|+||.-. ||.|.++||.|||+.++++.+++|+.+.+|+++.++++|+||+|++++|.+|.+|.++++.
T Consensus 1 ~~~ivqyivlr~dl~~alswplgaviaq~chas~a~i~~~~dd~~tl~y~dpq~id~mhkv~le~k~es~lm~lseklk~ 80 (121)
T KOG3305|consen 1 DDNIVQYIVLRRDLIDALSWPLGAVIAQGCHASAAAIHLFKDDADTLAYCDPQDIDNMHKVTLEAKDESALMKLSEKLKE 80 (121)
T ss_pred CCcceeEeeehHhhhhhccCchhHHHHhhhhHHHHHHHhccCCcchhhcCChhhhhhhhheeeeecChHHHHhHHHHHhc
Confidence 36789999999999764 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCCceEEEEcCCCCcchhhhhCCCCCCC
Q 042780 83 GGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122 (122)
Q Consensus 83 ~gi~~~l~~e~~~gt~TvlaigP~~~~~i~~itg~LkLl~ 122 (122)
.+|.|.+|+|+|+|++||||+.|+|++.+.++++||||+|
T Consensus 81 ~~i~hklwieqpeniptcia~kpy~k~~v~~f~k~lkl~k 120 (121)
T KOG3305|consen 81 GEIKHKLWIEQPENIPTCIALKPYPKDQVHKFFKHLKLCK 120 (121)
T ss_pred CCchhhhhhcCccCCCceeecCCCcHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999975
No 10
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=98.69 E-value=1e-07 Score=69.74 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=72.0
Q ss_pred eeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhcC-------ChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHH
Q 042780 7 VLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKD-------DPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEK 79 (122)
Q Consensus 7 ~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~~-------~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~ 79 (122)
+.|.|+|||.|| +.|.++-=++|-+++.-....+ |.+=..|. .+..+.=+||+. |.++|.++.++
T Consensus 1 d~K~viVv~~~L----p~g~~~NaaA~L~~~Lg~~~p~l~G~~~~D~~g~~h~---gi~~~PipIL~a-~~~~L~~l~~~ 72 (133)
T PF09391_consen 1 DTKCVIVVDEDL----PPGLAANAAAVLGLGLGAAHPELVGEDYRDADGNAHP---GISHIPIPILKA-NSEQLRELRQK 72 (133)
T ss_dssp SEEEEEEEETTS-----HHHHHHHHHHHHHHHHHH-GGGB-S-EE-TTS-EE------BSS-EEEEEE--HHHHHHHHHH
T ss_pred CcEEEEEECCCC----hHHHHHHHHHHHHHHHhccCccccCCcccCCCCCCCC---CCCCcCeEEEEc-CHHHHHHHHHH
Confidence 369999999999 8899999999999887765411 22222332 257888899999 56799999999
Q ss_pred HHHCCCCeEEEE-----------------EeCCCCceEEEEcC-CCCcchhhhhCCCCCCC
Q 042780 80 LNAGGIAHKLWI-----------------EQPENIPTCLATKP-YPKSTVSLVFKKLKLCK 122 (122)
Q Consensus 80 a~~~gi~~~l~~-----------------e~~~gt~TvlaigP-~~~~~i~~itg~LkLl~ 122 (122)
|.+.++.+..+. +.++.....+||+= +|+..|+++||+|+|||
T Consensus 73 a~~~~i~~~~F~~~aq~~~~y~e~~~~~~~~~~~~l~y~Gi~L~G~kk~V~kltg~l~L~r 133 (133)
T PF09391_consen 73 ALEREITVVDFTDEAQSTGHYEEYRAAVAATPEEDLEYVGIALFGPKKAVDKLTGSLPLLR 133 (133)
T ss_dssp HHHTT---EEEEGGGGG---HHHHHHHHTT--TTT--EEEEEEEEEHHHHHHHCTT-EE--
T ss_pred HHHCCCeEEeChHHHhhCCCHHHHHHHHhcCChhhccEEEEEEECCHHHHHHHhcCCCCCC
Confidence 999999888886 45666655555542 58899999999999986
No 11
>COG4954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.46 E-value=0.012 Score=42.34 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=70.3
Q ss_pred eEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhcCChhH----hhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHC
Q 042780 8 LVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHT----LQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAG 83 (122)
Q Consensus 8 ~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~~~~~~----~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~ 83 (122)
.|..||+|.||.. |.|=-+-|=-.-..++..-+...+|.- .-|- .+.=|.-|||.. |.+.|..+-+.+-++
T Consensus 4 tkiaivlrddlav-wqklnvtaflmsgivaq~peiigepyrd~agn~yn---plsiqpvivls~-dqetl~aihrraler 78 (135)
T COG4954 4 TKIAIVLRDDLAV-WQKLNVTAFLMSGIVAQSPEIIGEPYRDAAGNTYN---PLSIQPVIVLSG-DQETLKAIHRRALER 78 (135)
T ss_pred ceEEEEEecchHH-HHHhhHHHHHHhhhhhcCchhcCcccccccCCccC---ccccceEEEEeC-CHHHHHHHHHHHHhc
Confidence 4788999999954 776555332222222222111111211 1121 235677777765 477999999999999
Q ss_pred CCCeEEEE-----------------EeCCCCceEEEEcC-CCCcchhhhhCCCCC
Q 042780 84 GIAHKLWI-----------------EQPENIPTCLATKP-YPKSTVSLVFKKLKL 120 (122)
Q Consensus 84 gi~~~l~~-----------------e~~~gt~TvlaigP-~~~~~i~~itg~LkL 120 (122)
++++.+++ |..|.+.-|++|.- ..+..+|+||+.-++
T Consensus 79 ~vttslyieemfstghdaanravfa~f~pd~akvvgialraekkivdkitkgarm 133 (135)
T COG4954 79 KVTTSLYIEEMFSTGHDAANRAVFAEFGPDSAKVVGIALRAEKKIVDKITKGARM 133 (135)
T ss_pred CCCcceeHHHHHhccchHHHHHHHHhhCCCcceeeeeehhhhhHHHHHHcccccc
Confidence 99999995 77889988887753 344568999998665
No 12
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=88.49 E-value=2.2 Score=27.36 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=48.2
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEE---EeCCCCceEEEEcCCCCcchhhhhCCC
Q 042780 60 MHKVTLEVKGETQIVNLSEKLNAGGIAHKLWI---EQPENIPTCLATKPYPKSTVSLVFKKL 118 (122)
Q Consensus 60 ~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~---e~~~gt~TvlaigP~~~~~i~~itg~L 118 (122)
|.+.++-.+|..+-..+.+.++++|+++.++- |+..|=-.+|.+-+...+.+..+.+.-
T Consensus 1 m~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~~~~d~~~i~~~l~~~ 62 (73)
T PF11823_consen 1 MKYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALRFEPEDLEKIKEILEEN 62 (73)
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEEEChhhHHHHHHHHHHC
Confidence 45677778889999999999999999999885 888888889999887767676665543
No 13
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=75.67 E-value=6.2 Score=31.78 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=33.3
Q ss_pred CCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 55 QNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 55 ~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
+...|..+.++...|++++.++.+.+++.++|+.++
T Consensus 7 ~~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vl 42 (284)
T TIGR00179 7 YKIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLIL 42 (284)
T ss_pred eecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 456899999999999999999999999999999876
No 14
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=74.84 E-value=7.1 Score=31.86 Aligned_cols=46 Identities=7% Similarity=0.082 Sum_probs=38.7
Q ss_pred CChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 44 DDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 44 ~~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
.+..+.+|-. +...|.+..++...|+++|.++.+.+++.++|+.++
T Consensus 20 ~~~~l~~~tt-~~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vl 65 (302)
T PRK14652 20 RDAPLAPRTA-VRVGGPADLLVRPADPDALSALLRAVRELGVPLSIL 65 (302)
T ss_pred cCCCcccccE-eecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEE
Confidence 3444555554 678999999999999999999999999999998875
No 15
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=73.53 E-value=20 Score=27.74 Aligned_cols=67 Identities=7% Similarity=0.092 Sum_probs=45.4
Q ss_pred ChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEE--eCCCCceEEEEcCCCCcchhhhhCC
Q 042780 45 DPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIE--QPENIPTCLATKPYPKSTVSLVFKK 117 (122)
Q Consensus 45 ~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e--~~~gt~TvlaigP~~~~~i~~itg~ 117 (122)
...+.+-+. .|..--++.++++ .|.++...|+..||.|++... -++|...|+.-+. ..+.|+.++.+
T Consensus 21 k~slk~L~k----~g~~l~~i~i~~~-~lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~FkA~-Da~~i~~af~~ 89 (204)
T PF12687_consen 21 KQSLKKLLK----QGKGLKNIEITDE-DLKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFKAK-DADVINRAFKE 89 (204)
T ss_pred ceeHHHHHh----cCCCceEEecCHh-hHHHHHHHHHHcCCceEEeeccCCCCCcEEEEEEcC-cHHHHHHHHHH
Confidence 345666665 6777788888864 899999999999999999984 4445444443332 23445555544
No 16
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=71.89 E-value=9 Score=31.12 Aligned_cols=44 Identities=9% Similarity=0.003 Sum_probs=37.4
Q ss_pred hhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 46 PHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 46 ~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
..+.++-. +...|.....+++.|+++|.++.+.+++.++|+.++
T Consensus 7 ~~L~~~tt-~~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vl 50 (295)
T PRK14649 7 EPLAPYTS-WRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWL 50 (295)
T ss_pred CccccccE-eeeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEE
Confidence 34455544 667999999999999999999999999999999876
No 17
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=69.91 E-value=12 Score=30.54 Aligned_cols=45 Identities=7% Similarity=0.043 Sum_probs=37.1
Q ss_pred ChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 45 DPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 45 ~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
+..+..|.. +...|.+..++...|+++|.++.+.|++.++|+.++
T Consensus 22 ~~~L~~~tt-~~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vl 66 (307)
T PRK13906 22 DEPLKRYTY-TKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYL 66 (307)
T ss_pred CCccccceE-cCcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 344555554 556799999999999999999999999999998764
No 18
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=68.06 E-value=14 Score=30.13 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=37.3
Q ss_pred ChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 45 DPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 45 ~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
+..+..|-. +...|...+++...+++++.++.+.|++.++|+.++
T Consensus 22 ~~~l~~~tt-~~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~ 66 (305)
T PRK12436 22 DEMLKNHTH-IKVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFL 66 (305)
T ss_pred CCcchhccC-cccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEE
Confidence 344555554 456899999999999999999999999999998865
No 19
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=67.68 E-value=11 Score=22.90 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=34.7
Q ss_pred EcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEcCCC-CcchhhhhCCCC
Q 042780 66 EVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYP-KSTVSLVFKKLK 119 (122)
Q Consensus 66 kv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~TvlaigP~~-~~~i~~itg~Lk 119 (122)
-..+++...++.++++..|++..+......+...-+-+||.+ +++.......|+
T Consensus 11 s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 11 SFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 457889999999999999998776445557778888889954 455555544443
No 20
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=67.38 E-value=16 Score=29.80 Aligned_cols=45 Identities=13% Similarity=0.040 Sum_probs=37.5
Q ss_pred CChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 44 DDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 44 ~~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
.+..+.++-. +...|....++...|.++|.++.+.+++ ++|+.++
T Consensus 18 ~~~~L~~~tt-~~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vl 62 (297)
T PRK14653 18 INEEMKCHVS-FKIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKIL 62 (297)
T ss_pred cCCcccccCE-eeeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEE
Confidence 3445555554 6789999999999999999999999999 9999875
No 21
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=67.25 E-value=13 Score=29.92 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=37.0
Q ss_pred ChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 45 DPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 45 ~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
+..+.+|-. +...|....++...+++++.++.+.|++.++|..+.
T Consensus 16 ~~~l~~~~t-~~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~ 60 (298)
T PRK13905 16 NEPLARYTS-FRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVL 60 (298)
T ss_pred CCCccccce-eecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 344554443 566899999999999999999999999999998765
No 22
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=65.88 E-value=14 Score=30.80 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=36.5
Q ss_pred hHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 47 HTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 47 ~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
.+.++-. +...|.....++..|+++|.++.+.+++.++|+.++
T Consensus 8 ~L~~~tt-~riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vl 50 (334)
T PRK00046 8 SLKPLNT-FGIDARARHLVEAESEEQLLEALADARAAGLPVLVL 50 (334)
T ss_pred cccccce-eccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3444443 567999999999999999999999999999999875
No 23
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=65.29 E-value=15 Score=30.99 Aligned_cols=47 Identities=11% Similarity=0.148 Sum_probs=39.2
Q ss_pred cCChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 43 KDDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 43 ~~~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
+.+..+..+-. +.+.|..+.++.+.|+++|.++.+.++..++|+.+.
T Consensus 16 ~~~~~L~~~tt-~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vl 62 (363)
T PRK13903 16 AEDVPLAPLTT-LRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVL 62 (363)
T ss_pred eCCCCcccccE-eecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEE
Confidence 34445555554 667999999999999999999999999999999875
No 24
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.59 E-value=13 Score=23.08 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
.+.-.|.+++++.+++.++.+.++++|..+
T Consensus 37 ~~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 37 EARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 455667899999999999999999999764
No 25
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=63.85 E-value=37 Score=21.95 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
.|..-+.+.++|.+++.++.+++++.|+...
T Consensus 69 ~g~~hi~f~v~~~~~v~~~~~~l~~~g~~~~ 99 (125)
T cd07241 69 TGWAHLAFSVGSKEAVDELTERLRADGYLII 99 (125)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHCCCEEE
Confidence 4667799999999999999999999998654
No 26
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=62.70 E-value=17 Score=29.91 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=37.3
Q ss_pred hHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 47 HTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 47 ~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
.+.+|-. +...|.++..+...|.++|.++.+.++..++|+.++
T Consensus 20 ~L~~~tt-~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vl 62 (302)
T PRK14650 20 NLANYTT-YKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFIL 62 (302)
T ss_pred cccccce-eeeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3555554 678999999999999999999999999999999876
No 27
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=61.13 E-value=18 Score=30.55 Aligned_cols=46 Identities=22% Similarity=0.188 Sum_probs=38.7
Q ss_pred CChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 44 DDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 44 ~~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
.+..+.++-. +.+.|.....+...+.++|.++.+.++..++|+.++
T Consensus 14 ~~~~La~~tT-~rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iL 59 (354)
T PRK14648 14 RNVPLAERCS-FRIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLI 59 (354)
T ss_pred cCCCccccce-eeeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3444555554 678999999999999999999999999999999865
No 28
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=60.40 E-value=21 Score=21.96 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=20.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEe
Q 042780 62 KVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQ 93 (122)
Q Consensus 62 KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~ 93 (122)
|-+..+.|.-+..-+...++++||++++--+.
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 34677889999999999999999999876544
No 29
>PRK11633 cell division protein DedD; Provisional
Probab=59.58 E-value=16 Score=28.96 Aligned_cols=57 Identities=14% Similarity=0.122 Sum_probs=42.8
Q ss_pred EEEEEc---CCHHHHHHHHHHHHHCCCCeEEEE-EeCCCCceEEEEcCCC-CcchhhhhCCC
Q 042780 62 KVTLEV---KGETQIVNLSEKLNAGGIAHKLWI-EQPENIPTCLATKPYP-KSTVSLVFKKL 118 (122)
Q Consensus 62 KVvLkv---~~e~eL~~l~~~a~~~gi~~~l~~-e~~~gt~TvlaigP~~-~~~i~~itg~L 118 (122)
.-+|++ .|.+.-.+|..+++..|+..|+.. .-..|..|=+-+||.. ++..++...+|
T Consensus 149 ~~vVQlgaf~n~~~A~~l~~kL~~~G~~Ay~~~~~~~~G~~tRV~VGP~~sk~~ae~~~~~L 210 (226)
T PRK11633 149 AYVVQLGALKNADKVNEIVAKLRLSGYRVYTVPSTPVQGKITRIYVGPDASKDKLKGSLGEL 210 (226)
T ss_pred cEEEEecccCCHHHHHHHHHHHHHCCCeeEEEeeecCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 355554 577899999999999999999775 3356889999999985 44455554444
No 30
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=57.63 E-value=51 Score=21.53 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=25.8
Q ss_pred HhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEe
Q 042780 48 TLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQ 93 (122)
Q Consensus 48 ~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~ 93 (122)
++.|.+ .-.|..=-+..++|++.+.+..+++ |+|..-|+|+
T Consensus 37 ~~s~v~--~d~~k~~Cly~Ap~~eaV~~~~~~a---G~p~d~I~eV 77 (77)
T PF14026_consen 37 LRSYVS--EDDGKIFCLYEAPDEEAVREHARRA---GLPADRITEV 77 (77)
T ss_pred EEEEEe--cCCCeEEEEEECCCHHHHHHHHHHc---CCCcceEEEC
Confidence 356664 1123333456799998666655554 9999888764
No 31
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=56.33 E-value=17 Score=25.21 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCC
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIA 86 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~ 86 (122)
+|-+--.+.++|++.|.++.+++++.|+-
T Consensus 69 ~GvH~HtI~a~~~e~l~~I~~~L~~~G~L 97 (98)
T PF02829_consen 69 GGVHYHTIEAPDEEDLDKIEEALKKKGFL 97 (98)
T ss_dssp GGEEEEEEEESSHHHHHHHHHHHHHTT-B
T ss_pred CCEeeEEEEECCHHHHHHHHHHHHHCCCc
Confidence 67888999999999999999999999963
No 32
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=55.38 E-value=26 Score=24.16 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=26.2
Q ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 62 KVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 62 KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
..|+...+++|+.++.+.|.+.+++..+.
T Consensus 2 ~~vv~P~s~~ev~~~v~~a~~~~~~v~~~ 30 (139)
T PF01565_consen 2 AAVVRPKSVEEVQAIVKFANENGVPVRVR 30 (139)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTSEEEEE
T ss_pred cEEEEeCCHHHHHHHHHHHHHcCCcEEEE
Confidence 47899999999999999999999988765
No 33
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=54.71 E-value=28 Score=22.54 Aligned_cols=31 Identities=23% Similarity=0.469 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
.+..-+.+.++|.+++.++.++++++|++..
T Consensus 72 ~~~~hi~f~v~~~~~~~~~~~~~~~~g~~~~ 102 (126)
T cd08346 72 GQIHHIAFSVPSEASLDAWRERLRAAGVPVS 102 (126)
T ss_pred CcEEEEEEEcCCHHHHHHHHHHHHHcCCccc
Confidence 3456799999999999999999999999763
No 34
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.03 E-value=33 Score=22.32 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=26.6
Q ss_pred CCCeEEEEEcCC-HHHHHHHHHHHHHCCCCeEE
Q 042780 58 NSMHKVTLEVKG-ETQIVNLSEKLNAGGIAHKL 89 (122)
Q Consensus 58 ~g~~KVvLkv~~-e~eL~~l~~~a~~~gi~~~l 89 (122)
.+.--+++++++ .+++.++.+.++++|+.+..
T Consensus 39 ~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 39 DAHIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred eeEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 455666779999 99999999999999987653
No 35
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=49.55 E-value=65 Score=21.16 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHKL 89 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l 89 (122)
.|..-+.+.++|.+++.++.+.++++|++..-
T Consensus 67 ~g~~hia~~v~~~~d~~~~~~~l~~~g~~~~~ 98 (128)
T cd07242 67 PGLHHLAFRAPSREAVDELYARLAKRGAEILY 98 (128)
T ss_pred cCeeEEEEEcCCHHHHHHHHHHHHHcCCeEec
Confidence 45667999999999999999999999987643
No 36
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=49.12 E-value=51 Score=23.11 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=31.8
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEE
Q 042780 61 HKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLAT 103 (122)
Q Consensus 61 ~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~Tvlai 103 (122)
-||.++-.+..++.-|...|+++|++... .|.-...|+||
T Consensus 57 ~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~---~~d~~Y~a~gl 96 (100)
T PF15608_consen 57 WKVLVRDPDDPDLAHLLLLAEEKGVPVEV---YPDLPYSACGL 96 (100)
T ss_pred CEEEECCCCCccHHHHHHHHHHcCCcEEE---eCCCCeEEEEE
Confidence 36888888778999999999999999754 44446777776
No 37
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=49.08 E-value=39 Score=23.06 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
.|..-+.+.++|.+++.++.+.+.+.|++..
T Consensus 61 ~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~ 91 (134)
T cd08360 61 AGFHHAAFEVGDIDEVMLGGNHMLRAGYQTG 91 (134)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHcCCccc
Confidence 5677799999999999999999999998753
No 38
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=48.74 E-value=45 Score=21.64 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 59 SMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 59 g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
+..-+.+.+++.+++.++.+++++.|+..
T Consensus 58 ~~~~~~~~v~~~~~l~~~~~~l~~~G~~~ 86 (120)
T cd08362 58 RLDVVSFSVASRADVDALARQVAARGGTV 86 (120)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCce
Confidence 45678999999999999999999999975
No 39
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=48.67 E-value=34 Score=29.51 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=20.5
Q ss_pred EeCCCCceEEEEcCCCCcc----hhhhhCC
Q 042780 92 EQPENIPTCLATKPYPKST----VSLVFKK 117 (122)
Q Consensus 92 e~~~gt~TvlaigP~~~~~----i~~itg~ 117 (122)
++||.-.|+||.||..++. |..+||.
T Consensus 125 ~iP~dg~~vIATGPLTs~~La~~i~~ltG~ 154 (439)
T COG1206 125 EIPPDGITVIATGPLTSDALAEKIKELTGE 154 (439)
T ss_pred cCCCCCcEEEecCCCCCHHHHHHHHHhhCC
Confidence 7888889999999998765 4456664
No 40
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=48.43 E-value=42 Score=21.94 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=26.1
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
.|..-|.+.++|.+++.++.+++.++|+..
T Consensus 63 ~~~~hi~f~v~~~~~v~~~~~~l~~~g~~~ 92 (125)
T cd07255 63 TGLYHFAILLPSRADLAAALRRLIELGIPL 92 (125)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHcCCce
Confidence 455678899999999999999999999864
No 41
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=47.34 E-value=1e+02 Score=22.04 Aligned_cols=63 Identities=24% Similarity=0.362 Sum_probs=42.5
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeE----------EEEEeCCCCceEEEEcC-C--CCcchhhhhCCCCC
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHK----------LWIEQPENIPTCLATKP-Y--PKSTVSLVFKKLKL 120 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~----------l~~e~~~gt~TvlaigP-~--~~~~i~~itg~LkL 120 (122)
.+..=|.+.++|.+++.++.+.+++.|+... ++.+=|.|..--+...+ . -.+..+++-.+|||
T Consensus 64 ~~l~Hiaf~v~d~~dvd~~~~~L~~~Gv~~~~~~~~~~~~s~yf~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
T cd08347 64 GTVHHVAFRVPDDEELEAWKERLEALGLPVSGIVDRFYFKSLYFREPGGILFEIATDGPGFTVDEPLEELGERLKL 139 (157)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHCCCCcccccccccEEEEEEECCCCcEEEEEECCCCccccCChhHcCCccCC
Confidence 3455699999999999999999999998532 22355666655555533 2 13445666666766
No 42
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.75 E-value=48 Score=19.36 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=21.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 62 KVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 62 KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
.+.+.+.+.++|.++.+.+++.|...
T Consensus 46 ~i~v~~~~~~~l~~l~~~l~~~g~~~ 71 (73)
T cd04886 46 ELTLETRGAEHIEEIIAALREAGYDV 71 (73)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEE
Confidence 35577788889999999999999643
No 43
>PF08722 Tn7_Tnp_TnsA_N: TnsA endonuclease N terminal; InterPro: IPR014833 The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5'-end of the transposon is carried out by TnsA, and breakage and joining at the 3'-end is carried out by TnsB. The N-terminal domain of TnsA is catalytic. ; PDB: 1F1Z_B 1T0F_B.
Probab=45.64 E-value=20 Score=23.45 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=20.2
Q ss_pred CCCeEEEEEcCCHHHHHH---------HHHHHHHCCCCeEEEEE
Q 042780 58 NSMHKVTLEVKGETQIVN---------LSEKLNAGGIAHKLWIE 92 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~---------l~~~a~~~gi~~~l~~e 92 (122)
+|...+++.|+..++|.+ ..+.+++.|+++.+++|
T Consensus 45 ~~~~~~~ieVK~~~~l~~~~~~~k~~~~~~y~~~~g~~f~ivTE 88 (88)
T PF08722_consen 45 NGKKPVAIEVKPSSELEKPRTKEKLEIEREYWEEQGIPFRIVTE 88 (88)
T ss_dssp --SSEEEEEE--GGGGGSHHHHHHHHHHHHHHHHCT--EEEE-G
T ss_pred CcceEEEEEEccHHHhcChhHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 344788888887765544 34447899999999874
No 44
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=45.30 E-value=96 Score=21.20 Aligned_cols=84 Identities=7% Similarity=0.015 Sum_probs=45.5
Q ss_pred EEEEEeCCCCCCCCcchHHHhHHHHH--HHHH-HHhcCChhHhhcccCCCCCCCeE--EEEEcCCHHHHHHHHHHHHHCC
Q 042780 10 QYVVLRRDLIDAWPLGSVVTQGCHAS--VSAI-WSHKDDPHTLQYCSPQNINSMHK--VTLEVKGETQIVNLSEKLNAGG 84 (122)
Q Consensus 10 mvivVR~DL~m~w~~GkiaAQ~~HAa--~~~~-~~~~~~~~~~~w~~~~~~~g~~K--VvLkv~~e~eL~~l~~~a~~~g 84 (122)
|-+.||.|... |.|-=.++..-.- -.++ .+.++. -.|.+.|...|+.- -+..++|.++|.++.. +
T Consensus 1 Mlflv~m~v~~--P~~~~~~~~~~~~a~E~~~a~eLq~~---G~~~~lWr~~G~~~n~~Ifdv~d~~eLh~lL~-----s 70 (91)
T PF02426_consen 1 MLFLVRMTVNV--PPDMPPEEVDRLKAREKARAQELQRQ---GKWRHLWRVVGRYANVSIFDVEDNDELHELLS-----S 70 (91)
T ss_pred CeEEEEEEeeC--CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeEEEEecCCcceEEEEECCCHHHHHHHHH-----h
Confidence 55788888877 7776555433211 1111 111111 23444444466633 4678999999988754 5
Q ss_pred CCeEEEEEeCCCCceEEEEcCCCC
Q 042780 85 IAHKLWIEQPENIPTCLATKPYPK 108 (122)
Q Consensus 85 i~~~l~~e~~~gt~TvlaigP~~~ 108 (122)
+|-+-|.++ +|..+.+-|+
T Consensus 71 LPL~p~m~i-----~VtpL~~Hps 89 (91)
T PF02426_consen 71 LPLFPYMDI-----EVTPLARHPS 89 (91)
T ss_pred CCCccceee-----eEEecccCCC
Confidence 555545433 4555555554
No 45
>COG5440 Uncharacterized conserved protein [Function unknown]
Probab=45.21 E-value=22 Score=26.96 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=35.7
Q ss_pred ChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEcCCCCcch
Q 042780 45 DPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTV 111 (122)
Q Consensus 45 ~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~TvlaigP~~~~~i 111 (122)
+..+..|+. -.--+..|++++ +.+++.+...|+|..++..|.|.+.+..
T Consensus 7 d~~I~~WL~-----EeG~~~~kv~~~-------------na~fH~~v~~P~~~~~i~VI~p~~~~d~ 55 (161)
T COG5440 7 DNMILDWLA-----EEGNVSVKVPDE-------------NAPFHFVVKPPTGGKVISVIQPPRGSDM 55 (161)
T ss_pred HHHHHHHHH-----HhCceeeccCCC-------------CCceeEEecCCCCCceEEEEecCCCCcE
Confidence 455778884 222356677765 6788888889999899999998887754
No 46
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=44.83 E-value=94 Score=20.83 Aligned_cols=30 Identities=10% Similarity=0.174 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
.+...+.++++|.+++.++.+.++++|++.
T Consensus 58 ~~~~~iaf~v~~~~dv~~~~~~l~~~G~~~ 87 (124)
T cd08361 58 PAEQASGFELRDDDALESAATELEQYGHEV 87 (124)
T ss_pred CceEEEEEEECCHHHHHHHHHHHHHcCCce
Confidence 344568899999999999999999999875
No 47
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=44.44 E-value=46 Score=27.45 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=35.8
Q ss_pred HhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 48 TLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 48 ~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
+.+|-. ....|..++.+...|.++|.++.+.+++.++|+.++
T Consensus 9 L~~~tt-friGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~il 50 (291)
T COG0812 9 LKRYTT-FRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLIL 50 (291)
T ss_pred ccccee-EecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEE
Confidence 444433 557999999999999999999999999999999876
No 48
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=43.06 E-value=67 Score=25.94 Aligned_cols=37 Identities=11% Similarity=0.119 Sum_probs=33.2
Q ss_pred EEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCCce
Q 042780 63 VTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPT 99 (122)
Q Consensus 63 VvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~T 99 (122)
+.+-++|.+++..|.+.+.+.|.++.++.++..|..-
T Consensus 102 i~~~vDs~~~l~~l~~~a~~~~~~~~V~l~vd~G~~R 138 (358)
T cd06819 102 LIVCVDHPDNVRALAAAAVEAGVRLDVLVEIDVGQGR 138 (358)
T ss_pred EEEEECCHHHHHHHHHHHHhcCCceEEEEEECCCCCc
Confidence 8889999999999999999999999999999887643
No 49
>PRK06724 hypothetical protein; Provisional
Probab=43.00 E-value=47 Score=23.07 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 59 SMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 59 g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
|..-+.+++.|.+++.++.+.+++.|+++
T Consensus 63 g~~h~af~v~~~~dvd~~~~~l~~~G~~~ 91 (128)
T PRK06724 63 GPRHICYQAINRKVVDEVAEFLSSTKIKI 91 (128)
T ss_pred CceeEEEecCChHHHHHHHHHHHHCCCEE
Confidence 56678899999999999999999999875
No 50
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=42.73 E-value=65 Score=27.30 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=21.1
Q ss_pred EeCCCCCCCCcchHHHhHH-----HHHHHHHHHh
Q 042780 14 LRRDLIDAWPLGSVVTQGC-----HASVSAIWSH 42 (122)
Q Consensus 14 VR~DL~m~w~~GkiaAQ~~-----HAa~~~~~~~ 42 (122)
.|.|+-- |.|+.|||-| |++++.+..+
T Consensus 103 a~~~~vN--svgrTAaqmAAFVG~H~CV~iINN~ 134 (396)
T KOG1710|consen 103 ARMYLVN--SVGRTAAQMAAFVGHHECVAIINNH 134 (396)
T ss_pred Ccccccc--chhhhHHHHHHHhcchHHHHHHhcc
Confidence 3555556 9999999976 8899988765
No 51
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=42.48 E-value=90 Score=19.92 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
.+...+.+.+++.+++.++.+.+++.|+...
T Consensus 56 ~~~~h~~~~v~~~~~v~~~~~~l~~~g~~~~ 86 (117)
T cd07240 56 PGVDALGFEVASEEDLEALAAHLEAAGVAPE 86 (117)
T ss_pred CCceeEEEEcCCHHHHHHHHHHHHHcCCceE
Confidence 4667789999999999999999999998764
No 52
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=40.95 E-value=79 Score=25.52 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=32.4
Q ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCC
Q 042780 62 KVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENI 97 (122)
Q Consensus 62 KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt 97 (122)
.+.+-++|.+++..|.+.|+..|.++.++.++..|.
T Consensus 97 ~~~~~vds~~~l~~L~~~a~~~~~~~~V~l~vd~G~ 132 (353)
T cd06820 97 TLSVGVDSAEVARGLAEVAEGAGRPLEVLVEVDSGM 132 (353)
T ss_pred CEEEEECCHHHHHHHHHHHHhcCCeeEEEEEECCCC
Confidence 478889999999999999999999999999998874
No 53
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=40.76 E-value=80 Score=20.70 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=26.5
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
.+..-+.+.+.+.+++.++.+.++++|+...
T Consensus 60 ~~~~hiaf~v~~~~dv~~~~~~l~~~G~~~~ 90 (122)
T cd07265 60 AGLDFMGFKVLDDADLEKLEARLQAYGVAVE 90 (122)
T ss_pred CCeeEEEEEeCCHHHHHHHHHHHHHCCCcEE
Confidence 3456688999999999999999999998754
No 54
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=39.59 E-value=67 Score=22.62 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=27.0
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
.|..=|.+.|+|.+++.++.+.+++.|++.
T Consensus 55 ~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~ 84 (141)
T cd07258 55 SHFHHVNFMVTDIDDIGKALYRIKAHDVKV 84 (141)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHCCCcE
Confidence 466789999999999999999999999975
No 55
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=39.39 E-value=69 Score=23.31 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=29.0
Q ss_pred EEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCC
Q 042780 63 VTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPEN 96 (122)
Q Consensus 63 VvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~g 96 (122)
+++-++|.++|..|.+.++..|.+..+..++.+|
T Consensus 83 ~~~~ids~~~l~~l~~~~~~~~~~~~v~lrv~~g 116 (211)
T cd06808 83 IVVTVDSLEELEKLEEAALKAGPPARVLLRIDTG 116 (211)
T ss_pred CEEEeCCHHHHHHHHHHHHHhCCCceEEEEEcCC
Confidence 5667899999999999998888888888888776
No 56
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=39.09 E-value=57 Score=19.31 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEcCCCCcchhhhhCCCC
Q 042780 71 TQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFKKLK 119 (122)
Q Consensus 71 ~eL~~l~~~a~~~gi~~~l~~e~~~gt~TvlaigP~~~~~i~~itg~Lk 119 (122)
.-..++.+.+.+.|++.-++.+ .+++.+...=.+...+.++.+++.|+
T Consensus 15 ~~~~~if~~l~~~~i~v~~i~t-~~~~is~~v~~~~~~~~~~~l~~~l~ 62 (62)
T cd04890 15 GFLRKIFEILEKHGISVDLIPT-SENSVTLYLDDSLLPKKLKRLLAELE 62 (62)
T ss_pred CHHHHHHHHHHHcCCeEEEEec-CCCEEEEEEehhhhhHHHHHHHHhhC
Confidence 3567888999999999999976 45666665554444467777776654
No 57
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=38.71 E-value=90 Score=25.42 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=35.5
Q ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEcC
Q 042780 62 KVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKP 105 (122)
Q Consensus 62 KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~TvlaigP 105 (122)
.+.+-++|.++|..|.+.++..|.+..+..++..|..- .|+-|
T Consensus 100 ~~~~~vds~~~l~~l~~~a~~~~~~~~V~l~vd~G~~R-~Gv~~ 142 (374)
T cd06812 100 NLTILLDSVEQAQAVAAFSRQHGVRFPVLIEIDCDGHR-GGIAP 142 (374)
T ss_pred ceEEEECCHHHHHHHHHHHHHcCCceEEEEEeCCCCCc-CCCCC
Confidence 36778999999999999999999999999898877644 55555
No 58
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=38.67 E-value=1.1e+02 Score=19.72 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=26.4
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
.+..-+.+.++|.+++.++.+.+.+.|++..
T Consensus 58 ~~~~~~~~~v~~~~~~~~~~~~~~~~g~~v~ 88 (114)
T cd07261 58 GGGSELAFMVDDGAAVDALYAEWQAKGVKII 88 (114)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHHCCCeEe
Confidence 3556799999999999999999999997653
No 59
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=38.44 E-value=1.1e+02 Score=19.69 Aligned_cols=47 Identities=13% Similarity=0.221 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEcC
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKP 105 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~TvlaigP 105 (122)
.+..-+.+.+++ +++.++.+.+.+.|+...-..+.+.+..++...-|
T Consensus 66 ~~~~~~~~~v~~-~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP 112 (122)
T cd08354 66 SGPGHFAFAIPA-EELAEWEAHLEAKGVAIESEVQWPRGGRSLYFRDP 112 (122)
T ss_pred CCccEEEEEcCH-HHHHHHHHHHHhcCCceeccccCCCCeeEEEEECC
Confidence 466678899987 89999999999999975332232334455544444
No 60
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=38.23 E-value=71 Score=23.66 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=32.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCCc
Q 042780 62 KVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIP 98 (122)
Q Consensus 62 KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~ 98 (122)
.+..-++|.+.+..|.+.+...|.+..+..++..|..
T Consensus 86 ~~~~~v~s~~~~~~l~~~~~~~~~~~~v~l~vdtG~~ 122 (218)
T PF01168_consen 86 NIIPTVDSLEQLEALSKAAKKQGKPLKVHLKVDTGMG 122 (218)
T ss_dssp TEEEEE-SHHHHHHHHHHHHHHTSTEEEEEEBESSSS
T ss_pred cEEEEEchhhHHHHHHHHHHHcCCceEEEEeeccccc
Confidence 5889999999999999999999999999998877654
No 61
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=37.80 E-value=28 Score=22.37 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=31.6
Q ss_pred EEEEcCCHHHHHHHHHHHHHCCCCeEEEE---EeCCCCceEEEEc
Q 042780 63 VTLEVKGETQIVNLSEKLNAGGIAHKLWI---EQPENIPTCLATK 104 (122)
Q Consensus 63 VvLkv~~e~eL~~l~~~a~~~gi~~~l~~---e~~~gt~Tvlaig 104 (122)
+.+-. +...+.+-.+.|...|+|+.++. |...|+.|+--..
T Consensus 32 v~~d~-~~~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~ 75 (94)
T PF03129_consen 32 VELDD-SDKSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRD 75 (94)
T ss_dssp EEEES-SSSTHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETT
T ss_pred EEEEC-CCCchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECC
Confidence 44444 34678888899999999999998 6777888876654
No 62
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=37.76 E-value=93 Score=25.21 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=35.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEcC
Q 042780 62 KVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKP 105 (122)
Q Consensus 62 KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~TvlaigP 105 (122)
.+.+-++|.+++..|.+.+...|.+..++.++..|.. =.|+-|
T Consensus 104 ~~~~~Vds~~~l~~l~~~a~~~~~~~~V~l~Vd~G~~-R~Gv~~ 146 (361)
T cd06821 104 RFSALVDDLEAAEALSAAAGSAGLTLSVLLDVNTGMN-RTGIAP 146 (361)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCeEEEEEEeCCCCC-cCCCCC
Confidence 4678899999999999999999999999999988752 235544
No 63
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=37.50 E-value=75 Score=22.31 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=26.4
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
.+..-+.+.++|.+++.++.+.++++|++..
T Consensus 58 ~~~~hiaf~v~d~~~l~~~~~~l~~~Gi~~~ 88 (144)
T cd07239 58 PSLNHVAFEMPSIDEVMRGIGRMIDKGIDIL 88 (144)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHcCCcee
Confidence 3445689999999999999999999999763
No 64
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=36.61 E-value=45 Score=25.70 Aligned_cols=45 Identities=7% Similarity=-0.024 Sum_probs=36.5
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCC-CceEEEEcC
Q 042780 61 HKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPEN-IPTCLATKP 105 (122)
Q Consensus 61 ~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~g-t~TvlaigP 105 (122)
..+..-+.|.+.+..|.+.+...|.+..++.|+.-| -+.=+|+-|
T Consensus 95 ~~l~~~vds~~~~~~l~~~a~~~~~~~~V~l~vdtg~gm~R~G~~~ 140 (229)
T TIGR00044 95 FDWVHTIDSLKIAKKLNEQREKLQPPLNVLLQINISDEESKSGIQP 140 (229)
T ss_pred cCEEEEECCHHHHHHHHHHHHhcCCCceEEEEEECCCCCCCCCCCH
Confidence 346777899999999999999999999999998876 355567766
No 65
>COG5304 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.57 E-value=40 Score=23.36 Aligned_cols=30 Identities=10% Similarity=0.340 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
..-+.|.+++++ ..|..+..+|...|+|+-
T Consensus 49 kkd~riniRlss-~dLeaIK~kaSa~GlpYQ 78 (92)
T COG5304 49 KKDTRINIRLSS-SDLEAIKQKASAEGLPYQ 78 (92)
T ss_pred cccceeeEecCH-HHHHHHHHHHhhcCCcHH
Confidence 467789999996 589999999999999974
No 66
>PRK14433 acylphosphatase; Provisional
Probab=36.39 E-value=39 Score=22.54 Aligned_cols=42 Identities=17% Similarity=0.045 Sum_probs=27.6
Q ss_pred HhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEE
Q 042780 48 TLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIE 92 (122)
Q Consensus 48 ~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e 92 (122)
+.-|.. ..-+|.-.|++..++ +.+.++.+.++ .|=+..-|.+
T Consensus 29 l~G~V~-N~~dG~Vei~~~G~~-~~i~~f~~~l~-~gP~~a~V~~ 70 (87)
T PRK14433 29 LSGYAE-NLSDGRVEVVAEGPK-EALERLLHWLR-RGPRHARVEA 70 (87)
T ss_pred CEEEEE-ECCCCCEEEEEEECH-HHHHHHHHHHh-hCCCCcEEEE
Confidence 455664 334666778888764 57888888887 5555555554
No 67
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=35.94 E-value=55 Score=22.74 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCC
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGI 85 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi 85 (122)
..--.++|.++|++|+.++.+++.+.|-
T Consensus 70 ~~~~sl~i~~~~~ee~~~~f~~Ls~gG~ 97 (116)
T PF06983_consen 70 GNNISLCIECDDEEEIDRIFDKLSEGGQ 97 (116)
T ss_dssp -TTEEEEEEESSHHHHHHHHHHHHTTTE
T ss_pred CCcEEEEEEcCCHHHHHHHHHHHHcCCC
Confidence 3456799999999999999999999874
No 68
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=35.74 E-value=97 Score=25.83 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=30.8
Q ss_pred EcCCHHHHHHHHHHHHHCCCCeEEEE--EeC--CCCceEEEEcC
Q 042780 66 EVKGETQIVNLSEKLNAGGIAHKLWI--EQP--ENIPTCLATKP 105 (122)
Q Consensus 66 kv~~e~eL~~l~~~a~~~gi~~~l~~--e~~--~gt~TvlaigP 105 (122)
++.++++..+..++..+.|++..+|+ +++ +|. |..++|-
T Consensus 162 ~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~-~l~c~gs 204 (308)
T KOG2599|consen 162 EIRTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGE-TLRCIGS 204 (308)
T ss_pred eeccHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCc-EEEEEEe
Confidence 58899999999999999999999988 443 344 6666663
No 69
>PF02624 YcaO: YcaO-like family; InterPro: IPR003776 This domain comprises the whole of a protein in Methanocaldococcus jannaschii (Methanococcus jannaschii) and Methanobacterium thermoautotrophicum, all but the N-terminal 60 residues from a protein of Mycobacterium tuberculosis, and all but the C-terminal 180 residues from a protein in Haemophilus influenzae and Escherichia coli, among proteins from published complete genomes.
Probab=35.50 E-value=93 Score=24.57 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=36.2
Q ss_pred hHhhcccCCCCCCCeEE-EEEcCCHHHHHHHHHHHHHCCCCeEEEE-EeCCCCceEEEEc
Q 042780 47 HTLQYCSPQNINSMHKV-TLEVKGETQIVNLSEKLNAGGIAHKLWI-EQPENIPTCLATK 104 (122)
Q Consensus 47 ~~~~w~~~~~~~g~~KV-vLkv~~e~eL~~l~~~a~~~gi~~~l~~-e~~~gt~Tvlaig 104 (122)
...-|+. .....+| .+...+..++.+..+.++..|+..+++- ...-|.+|++++.
T Consensus 137 ~~~~w~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~l~dit~~~~vpv~~a~~ 193 (332)
T PF02624_consen 137 FSLWWYN---RLPPPRIDDVLDPTLPELLERLERLREAGLEVRLFDITNDFGVPVVAAVL 193 (332)
T ss_pred HHHHHHh---cCCCCeEecccCcCCHHHHHHHHHhhcCceEEEEEECCCCCCceEEEEEE
Confidence 3345663 1334556 4555566778888888888997777664 3346888888887
No 70
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=35.25 E-value=70 Score=20.92 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=24.4
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 60 MHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 60 ~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
-.-|.+.++|.+++.++.+.+.+.|+..
T Consensus 65 ~~hi~f~v~~~~~v~~~~~~~~~~g~~~ 92 (123)
T cd07262 65 GTHVAFAAPSREAVDAFHAAALAAGGTD 92 (123)
T ss_pred ceEEEEECCCHHHHHHHHHHHHHcCCcc
Confidence 3579999999999999999999999763
No 71
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=34.58 E-value=60 Score=25.54 Aligned_cols=38 Identities=11% Similarity=-0.045 Sum_probs=29.9
Q ss_pred HhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 48 TLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 48 ~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
+..|++ +++-.+++.|+.+ +..++.+.+++.|+++.+|
T Consensus 232 ~~~~~s----es~~~~l~~v~~~-~~~~~~~~~~~~gi~~~~I 269 (272)
T cd02193 232 LEIALF----ESQERGVIQVRAE-DRDAVEEAQYGLADCVHVL 269 (272)
T ss_pred HHHHHh----hhccCeEEEECHH-HHHHHHHHHhccCCCeEEe
Confidence 345665 6888889999854 6788999999999998764
No 72
>PRK10927 essential cell division protein FtsN; Provisional
Probab=34.57 E-value=52 Score=27.59 Aligned_cols=56 Identities=18% Similarity=0.263 Sum_probs=43.8
Q ss_pred eEEEEEc---CCHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEcCC-CCcchhhhhCCCC
Q 042780 61 HKVTLEV---KGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPY-PKSTVSLVFKKLK 119 (122)
Q Consensus 61 ~KVvLkv---~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~TvlaigP~-~~~~i~~itg~Lk 119 (122)
.+.+|.| .+.+.-++|..++...|++.++ ...|+.+=+-+||+ .++..+....+|+
T Consensus 246 ~~~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I---~~~g~~~RVrVGPf~sr~eAe~a~~rLk 305 (319)
T PRK10927 246 RRWMVQCGSFRGAEQAETVRAQLAFEGFDSKI---TTNNGWNRVVIGPVKGKENADSTLNRLK 305 (319)
T ss_pred CcEEEEeCccCCHHHHHHHHHHHHHcCCeeEE---ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4566775 4678889999999999999998 35778999999999 5566776655554
No 73
>PRK10637 cysG siroheme synthase; Provisional
Probab=34.18 E-value=39 Score=28.94 Aligned_cols=19 Identities=5% Similarity=0.010 Sum_probs=16.0
Q ss_pred CCCCceEEEEcCCCCcchh
Q 042780 94 PENIPTCLATKPYPKSTVS 112 (122)
Q Consensus 94 ~~gt~TvlaigP~~~~~i~ 112 (122)
.+|+++++|+||+..+.+.
T Consensus 214 ~~g~l~iVG~GpGdp~lLT 232 (457)
T PRK10637 214 HRGEVVLVGAGPGDAGLLT 232 (457)
T ss_pred CCcEEEEEEeCCCChHHHH
Confidence 4799999999998877654
No 74
>PHA01748 hypothetical protein
Probab=34.14 E-value=1e+02 Score=19.19 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHCCCC
Q 042780 59 SMHKVTLEVKGETQIVNLSEKLNAGGIA 86 (122)
Q Consensus 59 g~~KVvLkv~~e~eL~~l~~~a~~~gi~ 86 (122)
+|.+|.+++++ +-+.++.+.+++.|++
T Consensus 1 ~m~~iSvrLp~-el~~eld~~a~~~g~~ 27 (60)
T PHA01748 1 MMKVITFKIEE-DLLELLDRYAIKHGLN 27 (60)
T ss_pred CceEEEEECCH-HHHHHHHHHHHHhCCC
Confidence 47899999995 5788888889988874
No 75
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=34.13 E-value=1.1e+02 Score=20.08 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=23.9
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 61 HKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 61 ~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
.-+.+.++|.+++.++.+.++++|...
T Consensus 70 ~~l~f~v~~~~~vd~~~~~l~~~G~~i 96 (124)
T cd09012 70 VLISLSADSREEVDELVEKALAAGGKE 96 (124)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHCCCcc
Confidence 358899999999999999999999765
No 76
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=34.11 E-value=67 Score=23.14 Aligned_cols=29 Identities=10% Similarity=0.291 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 59 SMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 59 g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
+..=+.+.++|.++|.++.+.+++.|+..
T Consensus 69 ~~~hiaf~v~~~~~l~~~~~~l~~~Gv~i 97 (166)
T cd09014 69 RLHHLAYALDTREDVLRAADIFLENGIFI 97 (166)
T ss_pred CceEEEEECCCHHHHHHHHHHHHHcCCcc
Confidence 44568899999999999999999999874
No 77
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=32.96 E-value=63 Score=25.13 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 59 SMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 59 g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
+..-+.+.|+|+++|.++.+.+++.|+++.
T Consensus 58 ~~~~~~f~V~~~~~l~~~~~~L~~~Gv~~~ 87 (286)
T TIGR03213 58 DLAYAGWEVADEAGLDQVKEKLEKAGVAVT 87 (286)
T ss_pred CeeeEeeeeCCHHHHHHHHHHHHHcCCceE
Confidence 344477889999999999999999998753
No 78
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=32.89 E-value=1e+02 Score=20.01 Aligned_cols=29 Identities=10% Similarity=0.378 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 59 SMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 59 g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
+..=+.+.++|.++|.++.+.+.+.|++.
T Consensus 58 ~~~h~~f~v~~~~dl~~~~~~l~~~G~~~ 86 (120)
T cd07254 58 GLNHLGVQVDSAEEVAEAKARAEAAGLPT 86 (120)
T ss_pred CeeEEEEEeCCHHHHHHHHHHHHHcCCeE
Confidence 55558899999999999999999999875
No 79
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=32.86 E-value=1e+02 Score=21.46 Aligned_cols=31 Identities=3% Similarity=0.228 Sum_probs=26.5
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
.+..-+.++++|.+++.+..+.++++|++..
T Consensus 66 ~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~ 96 (143)
T cd07243 66 GKLHHFSFFLESWEDVLKAGDIISMNDVSID 96 (143)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHHcCCceE
Confidence 4556789999999999999999999998753
No 80
>PRK12338 hypothetical protein; Provisional
Probab=32.55 E-value=73 Score=26.47 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
+|-+--.+.++|++.|.++.+++++.|+-.
T Consensus 284 ~gvH~Hti~a~~~e~l~~i~~~L~~~G~L~ 313 (319)
T PRK12338 284 NNVHSHRICAPDEESLNRIIEELEEEGLLY 313 (319)
T ss_pred CCeeEEEEEeCCHHHHHHHHHHHHHCCccc
Confidence 688999999999999999999999999654
No 81
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=32.32 E-value=1.5e+02 Score=19.51 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 59 SMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 59 g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
+..=+.+.++|.++|.++.+.++++|++..
T Consensus 57 ~~~~~~f~v~~~~dl~~~~~~l~~~Gv~~~ 86 (120)
T cd07252 57 DLAYAGWEVADEAALDALAARLRAAGVAVE 86 (120)
T ss_pred ceeEEEEEECCHHHHHHHHHHHHHcCCeEE
Confidence 444577789998999999999999998753
No 82
>COG3147 DedD Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.30 E-value=93 Score=24.89 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCeEEEEEeC-CCCceEEEEcCCCC
Q 042780 67 VKGETQIVNLSEKLNAGGIAHKLWIEQP-ENIPTCLATKPYPK 108 (122)
Q Consensus 67 v~~e~eL~~l~~~a~~~gi~~~l~~e~~-~gt~TvlaigP~~~ 108 (122)
..|++.-++|..+++..|++.|+-.-.| .|.+|-+-+||..+
T Consensus 159 l~n~dranel~~~Lr~~G~~ayi~~~~p~qg~ltRv~vGP~~s 201 (226)
T COG3147 159 LKNADRANELVAKLRGAGYRAYIEPSTPVQGDLTRVRVGPDAS 201 (226)
T ss_pred hhhHHHHHHHHHHHHhCCCceeecccCCCCCceeEEEecCccc
Confidence 3578889999999999999998654223 69999999999864
No 83
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=32.18 E-value=1.1e+02 Score=20.60 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
.|..-+.+.++|.+++.++.+.+++.|+..
T Consensus 58 ~~~~hl~~~v~d~~~~~~~~~~l~~~G~~i 87 (131)
T cd08343 58 PGLHHVAFEVESLDDILRAADRLAANGIQI 87 (131)
T ss_pred CCeeEEEEEcCCHHHHHHHHHHHHHcCCee
Confidence 566668899999999999999999999864
No 84
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=32.16 E-value=1.3e+02 Score=24.14 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=35.6
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEcC
Q 042780 61 HKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKP 105 (122)
Q Consensus 61 ~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~TvlaigP 105 (122)
..+.+-++|.+++..|.+.+.+.|.+..++.++..|..= .|+-|
T Consensus 86 ~~i~~~Vds~~~l~~l~~~a~~~~~~~~V~l~ID~G~~R-~Gv~~ 129 (345)
T cd07376 86 AEFHVLVDSPEALAALAAFAAAHGVRLRVMLEVDVGGHR-SGVRP 129 (345)
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeeEEEEEeCCCCCc-CCCCC
Confidence 346777999999999999999999999999999877533 46655
No 85
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=31.91 E-value=95 Score=21.91 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=26.1
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
.+..=+.+.|+|.++|.++.+.++++|++.
T Consensus 72 ~g~~Hiaf~V~d~~~l~~~~~~L~~~G~~v 101 (154)
T cd07237 72 KRIHHLMLEVTSLDDVGRAYDRVRARGIPI 101 (154)
T ss_pred ceeEEEEEEcCCHHHHHHHHHHHHHcCCce
Confidence 455569999999999999999999999865
No 86
>PRK00907 hypothetical protein; Provisional
Probab=31.76 E-value=81 Score=21.56 Aligned_cols=25 Identities=8% Similarity=0.057 Sum_probs=21.3
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHCCC
Q 042780 61 HKVTLEVKGETQIVNLSEKLNAGGI 85 (122)
Q Consensus 61 ~KVvLkv~~e~eL~~l~~~a~~~gi 85 (122)
-.+.+.+.|+++|..|++.+.+...
T Consensus 63 vtv~i~ats~eQld~iY~~L~~~~~ 87 (92)
T PRK00907 63 VRIGFRAESREQYDAAHQALRDHPE 87 (92)
T ss_pred EEEEEEECCHHHHHHHHHHHhhCCC
Confidence 3577889999999999999997664
No 87
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=31.61 E-value=1.5e+02 Score=19.25 Aligned_cols=30 Identities=10% Similarity=0.276 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 59 SMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 59 g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
+..-+.+.+.+.+++.++.+++++.|+...
T Consensus 60 ~~~hi~~~v~~~~dv~~~~~~l~~~g~~~~ 89 (121)
T cd07266 60 GLGHIAFRVRSEEDLDKAEAFFQELGLPTE 89 (121)
T ss_pred ceeEEEEECCCHHHHHHHHHHHHHcCCCcc
Confidence 455578889999999999999999998763
No 88
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=30.86 E-value=1.2e+02 Score=19.67 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 59 SMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 59 g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
+..-+.+.+.+.+++.++.+++++.|+..
T Consensus 66 ~~~~l~~~~~~~~dvd~~~~~l~~~G~~~ 94 (122)
T cd07235 66 HRIALAFLCETPAEVDALYAELVGAGYPG 94 (122)
T ss_pred CcEEEEEEcCCHHHHHHHHHHHHHCCCCc
Confidence 45567899999999999999999999764
No 89
>PRK00341 hypothetical protein; Provisional
Probab=30.76 E-value=87 Score=21.17 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.4
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHCCC
Q 042780 61 HKVTLEVKGETQIVNLSEKLNAGGI 85 (122)
Q Consensus 61 ~KVvLkv~~e~eL~~l~~~a~~~gi 85 (122)
-.|.+.+.|++++..+++.+++...
T Consensus 62 ~tv~i~~~s~~q~~~iy~~L~~~~~ 86 (91)
T PRK00341 62 VQLHIVATDEDQLQDINSALRATGR 86 (91)
T ss_pred EEEEEEECCHHHHHHHHHHHhhCCC
Confidence 3588899999999999999987653
No 90
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=30.69 E-value=1.1e+02 Score=21.51 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
.|..-|.++|+|.+++....+.+++.|+...
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~ 96 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKGYEHV 96 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCcEe
Confidence 5777899999999999999999999998653
No 91
>PRK12856 hypothetical protein; Provisional
Probab=30.37 E-value=1.1e+02 Score=21.33 Aligned_cols=37 Identities=5% Similarity=0.040 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHCCCCeEEEE-----EeCCCCceEEEEcCC
Q 042780 70 ETQIVNLSEKLNAGGIAHKLWI-----EQPENIPTCLATKPY 106 (122)
Q Consensus 70 e~eL~~l~~~a~~~gi~~~l~~-----e~~~gt~TvlaigP~ 106 (122)
++.|.++.+.|++.|=+.-+=. ++..|..-|+|.|.+
T Consensus 59 ~~A~~rm~~~A~~lGAnAVvgvr~d~~~~~~~~~~V~ayGTA 100 (103)
T PRK12856 59 DIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSGTA 100 (103)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhHhcCcEEEEEEEeeE
Confidence 4689999999999998876544 555667778887754
No 92
>PRK02047 hypothetical protein; Provisional
Probab=30.21 E-value=82 Score=21.24 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.2
Q ss_pred EEEEEcCCHHHHHHHHHHHHHCC
Q 042780 62 KVTLEVKGETQIVNLSEKLNAGG 84 (122)
Q Consensus 62 KVvLkv~~e~eL~~l~~~a~~~g 84 (122)
.|.+.+.|++++..|++.+.+..
T Consensus 63 tv~v~v~s~eq~~~iY~~L~~~~ 85 (91)
T PRK02047 63 TITVRATSREQLDNIYRALTGHP 85 (91)
T ss_pred EEEEEECCHHHHHHHHHHHhhCC
Confidence 47888999999999999998754
No 93
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=29.89 E-value=30 Score=27.24 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=15.7
Q ss_pred CCCCceEEEEcCCCCcchh
Q 042780 94 PENIPTCLATKPYPKSTVS 112 (122)
Q Consensus 94 ~~gt~TvlaigP~~~~~i~ 112 (122)
.+|.++++|+||+..+.+.
T Consensus 13 ~~g~l~vVG~GpGdp~~LT 31 (263)
T PLN02625 13 GPGNVFLVGTGPGDPDLLT 31 (263)
T ss_pred CCCEEEEEEeCCCChHHhH
Confidence 4789999999998777654
No 94
>PRK00967 hypothetical protein; Provisional
Probab=29.37 E-value=1.5e+02 Score=20.59 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHCCCCeEEEE-----EeCCCCceEEEEcCC
Q 042780 70 ETQIVNLSEKLNAGGIAHKLWI-----EQPENIPTCLATKPY 106 (122)
Q Consensus 70 e~eL~~l~~~a~~~gi~~~l~~-----e~~~gt~TvlaigP~ 106 (122)
++.+.+|.++|++.|=+.-+=. ++..|..-++|.|.+
T Consensus 59 ~eA~~rm~~~A~~~GAnAIIgvr~d~~~~~~~~~~v~ayGTA 100 (105)
T PRK00967 59 DIAIDRMKEEAKQKGANAIVGMRFDSSSIRDGMQSVAAYGTA 100 (105)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEeeeecCceEEEEEEeEE
Confidence 4689999999999997765543 566677778888754
No 95
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=29.31 E-value=1.2e+02 Score=26.00 Aligned_cols=33 Identities=6% Similarity=-0.030 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
......++...|++|+.++.+.|.+.|++..++
T Consensus 12 ~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~ 44 (438)
T TIGR01678 12 SASPEVYYQPTSVEEVREVLALAREQKKKVKVV 44 (438)
T ss_pred cCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEE
Confidence 455778999999999999999999999887654
No 96
>PRK12855 hypothetical protein; Provisional
Probab=29.26 E-value=1.2e+02 Score=21.13 Aligned_cols=37 Identities=5% Similarity=-0.028 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHCCCCeEEEE-----EeCCCCceEEEEcCC
Q 042780 70 ETQIVNLSEKLNAGGIAHKLWI-----EQPENIPTCLATKPY 106 (122)
Q Consensus 70 e~eL~~l~~~a~~~gi~~~l~~-----e~~~gt~TvlaigP~ 106 (122)
++.|.++.+.|++.|=+.-+=. ++..|..-|+|.|.+
T Consensus 59 ~~A~~rm~~~A~~lGAnAVVgvr~d~~~i~~~~~~V~ayGTA 100 (103)
T PRK12855 59 DIAMEEMKTLARQKNANAIVGIDVDYEVVREGMLMVAVSGTA 100 (103)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhHhcCcEEEEEEEeeE
Confidence 4689999999999998876544 555666777787754
No 97
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=28.55 E-value=1.3e+02 Score=24.36 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=34.2
Q ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEcC
Q 042780 62 KVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKP 105 (122)
Q Consensus 62 KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~TvlaigP 105 (122)
.+++-++|.++|..|.+.+++.|.+..++.++..|. +=.|+-|
T Consensus 94 ~i~~~vds~~~l~~l~~~a~~~~~~~~v~l~vdtG~-~R~G~~~ 136 (367)
T cd00430 94 DLTPTVSSLEQAEALSAAAARLGKTLKVHLKIDTGM-GRLGFRP 136 (367)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCceEEEEEEcCCC-CCCCCCH
Confidence 456779999999999999998898888888887774 4445543
No 98
>PRK13340 alanine racemase; Reviewed
Probab=28.53 E-value=1.2e+02 Score=25.48 Aligned_cols=45 Identities=7% Similarity=-0.030 Sum_probs=36.6
Q ss_pred EEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCC-CCceEEEEcCCCC
Q 042780 63 VTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPE-NIPTCLATKPYPK 108 (122)
Q Consensus 63 VvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~-gt~TvlaigP~~~ 108 (122)
+.+-++|.+++..|.+.++..|.+..++.++.+ | .+=+|+.|...
T Consensus 134 l~~~v~s~~~l~~l~~~a~~~~~~~~V~LkVDt~G-m~R~G~~~~e~ 179 (406)
T PRK13340 134 LEELIGDDEQAKLLAAIAKKNGKPIDIHLALNSGG-MSRNGLDMSTA 179 (406)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCceEEEEEECCCC-CCCcCCChhhh
Confidence 456689999999999999888988888899988 6 77778877533
No 99
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=28.28 E-value=93 Score=23.21 Aligned_cols=34 Identities=6% Similarity=0.106 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEcCCCCcchhhhhC
Q 042780 72 QIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFK 116 (122)
Q Consensus 72 eL~~l~~~a~~~gi~~~l~~e~~~gt~TvlaigP~~~~~i~~itg 116 (122)
.+.+..+.+++.||..+ ++|||....+++..|.+
T Consensus 127 ~~~~~a~~lk~~gV~i~-----------~vGiG~~~~~el~~ia~ 160 (192)
T cd01473 127 ELQDISLLYKEENVKLL-----------VVGVGAASENKLKLLAG 160 (192)
T ss_pred hHHHHHHHHHHCCCEEE-----------EEEeccccHHHHHHhcC
Confidence 47788889999998875 56666655555555554
No 100
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=27.95 E-value=2.8e+02 Score=21.48 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCC
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGI 85 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi 85 (122)
.+.+=|.+.++|.+++.++.+.++++|+
T Consensus 205 ~~~~Hiaf~v~d~~~v~~~~~~l~~~G~ 232 (286)
T TIGR03213 205 KRLNHLMLEVDTLDDVGLALDRVDADGI 232 (286)
T ss_pred CceEEEEEEcCCHHHHHHHHHHHHHCCC
Confidence 4555699999999999999999999998
No 101
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=27.69 E-value=1.9e+02 Score=19.24 Aligned_cols=31 Identities=23% Similarity=0.138 Sum_probs=26.3
Q ss_pred CCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 57 INSMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 57 ~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
..+-.+||-|..++ -=+.+.+.|+++|||..
T Consensus 14 ~~~aP~VvAKG~g~-~A~~I~~~A~e~~VPi~ 44 (82)
T TIGR00789 14 KDKAPKVVASGVGE-VAERIIEIAKKHGIPIV 44 (82)
T ss_pred CCCCCEEEEEeCCH-HHHHHHHHHHHcCCCEE
Confidence 36789999999987 45689999999999975
No 102
>PF11294 DUF3095: Protein of unknown function (DUF3095); InterPro: IPR021445 Some members in this bacterial family of proteins are annotated as adenylyl cyclase however this cannot be confirmed. Currently no function is known.
Probab=27.57 E-value=1.7e+02 Score=25.05 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=44.2
Q ss_pred CCCCeEEEEEcCCH--HHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEcCCCCcch
Q 042780 57 INSMHKVTLEVKGE--TQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTV 111 (122)
Q Consensus 57 ~~g~~KVvLkv~~e--~eL~~l~~~a~~~gi~~~l~~e~~~gt~TvlaigP~~~~~i 111 (122)
+++.-|.|+-++++ +.|+...+++.+.|+..|-...+.+-.+||+---|...+-|
T Consensus 298 ~Dd~Lrmvid~t~~~~~~l~~~L~~~~~~G~~~YGlH~sd~AlMTC~V~~~~~~~Hv 354 (373)
T PF11294_consen 298 FDDGLRMVIDCTPEQRDALEARLEQAEAAGKLRYGLHRSDAALMTCIVPSRSRDDHV 354 (373)
T ss_pred cCCceeEEEeCCHHHHHHHHHHHHHHHHCCceEEeeecccceeeEEeccCCCCCCce
Confidence 48999999999865 45677777888999999999988899999998766544433
No 103
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.50 E-value=1.2e+02 Score=20.80 Aligned_cols=37 Identities=8% Similarity=-0.025 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHCCCCeEEEE---EeCCCCceEEEEcCCC
Q 042780 71 TQIVNLSEKLNAGGIAHKLWI---EQPENIPTCLATKPYP 107 (122)
Q Consensus 71 ~eL~~l~~~a~~~gi~~~l~~---e~~~gt~TvlaigP~~ 107 (122)
..+.+-.+.|...|+++.++. |+..|+.|+--.....
T Consensus 64 ~sl~kqlk~A~k~g~~~~iiiG~~e~~~~~v~lk~l~~~~ 103 (121)
T cd00858 64 GSIGRRYARQDEIGTPFCVTVDFDTLEDGTVTIRERDSMR 103 (121)
T ss_pred CCHHHHHHHhHhcCCCEEEEECcCchhCCEEEEEECCCCc
Confidence 578888999999999999998 6778888876665433
No 104
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=27.32 E-value=37 Score=19.91 Aligned_cols=9 Identities=33% Similarity=0.877 Sum_probs=8.2
Q ss_pred EEEEEeCCC
Q 042780 10 QYVVLRRDL 18 (122)
Q Consensus 10 mvivVR~DL 18 (122)
||+.||+|+
T Consensus 1 ~y~fvrkdi 9 (41)
T PF13121_consen 1 MYFFVRKDI 9 (41)
T ss_pred CEEEEEeec
Confidence 689999999
No 105
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=27.18 E-value=1.4e+02 Score=21.28 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCC
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIA 86 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~ 86 (122)
.|..-+.+.++|.+++.++.+.++++|+.
T Consensus 62 ~~~~Hiaf~v~~~~~v~~~~~~L~~~G~~ 90 (161)
T cd07256 62 PRLHHVAFWVPEPHNIIRTCDLLAAAGYS 90 (161)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHcCCC
Confidence 45567889999999999999999999975
No 106
>PRK11675 LexA regulated protein; Provisional
Probab=27.17 E-value=1.5e+02 Score=20.42 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
.|.+.|-|++++ +....|.+.|++.|+.-
T Consensus 48 ~glKRveVKlde-dl~ekL~eyAe~~nitR 76 (90)
T PRK11675 48 RGLKRVELKLNA-DLVDALNELAEARNISR 76 (90)
T ss_pred cCceeEEEEECH-HHHHHHHHHHHHcCCCH
Confidence 799999999995 57888999999998753
No 107
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=26.90 E-value=1.9e+02 Score=18.89 Aligned_cols=30 Identities=10% Similarity=0.205 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
.|..-+.+.+.|.+++.++.+.+++.|++.
T Consensus 61 ~~~~h~af~v~~~~~v~~~~~~l~~~G~~~ 90 (121)
T cd09013 61 AGLGHIAWRASSPEALERRVAALEASGLGI 90 (121)
T ss_pred CceEEEEEEcCCHHHHHHHHHHHHHcCCcc
Confidence 455668889999999999999999999875
No 108
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.86 E-value=73 Score=20.18 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHCCCCeEEEE---EeCCCCceEEEEc
Q 042780 71 TQIVNLSEKLNAGGIAHKLWI---EQPENIPTCLATK 104 (122)
Q Consensus 71 ~eL~~l~~~a~~~gi~~~l~~---e~~~gt~Tvlaig 104 (122)
..|..-.+.|...|+++.++. |...|+.++--..
T Consensus 41 ~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~~ 77 (94)
T cd00861 41 ERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRK 77 (94)
T ss_pred CCcccchhHHHhcCCCEEEEECCchhhCCEEEEEECC
Confidence 478888889999999999998 7778888876554
No 109
>PF10903 DUF2691: Protein of unknown function (DUF2691); InterPro: IPR020216 This entry represents a group of uncharacterised proteins.
Probab=26.79 E-value=1.9e+02 Score=21.79 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=28.5
Q ss_pred EEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEE
Q 042780 63 VTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLA 102 (122)
Q Consensus 63 VvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~Tvla 102 (122)
|.+-|+|.+.+..|++.|.+.|-...-.+--..++.|.+.
T Consensus 113 v~IycKd~~~i~~lyqna~~~gy~~i~yITdeNd~Rt~l~ 152 (153)
T PF10903_consen 113 VSIYCKDQEIIESLYQNAQNQGYENIEYITDENDTRTRLS 152 (153)
T ss_pred EEEEEcCHHHHHHHHHHHHHCCceEEEEEeccCCcccccc
Confidence 5667899999999999999999764333322245566554
No 110
>PRK07334 threonine dehydratase; Provisional
Probab=26.79 E-value=1.1e+02 Score=25.58 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=25.6
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 61 HKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 61 ~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
-.+.++++|.++|.++.+++++.|+...++
T Consensus 373 i~l~i~V~d~~~L~~vi~~Lr~~g~~~~~~ 402 (403)
T PRK07334 373 LELVIETRDAAHLQEVIAALRAAGFEARLV 402 (403)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCeeEeC
Confidence 467788999999999999999999876553
No 111
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=26.69 E-value=50 Score=22.01 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=30.1
Q ss_pred EEcCCHHHHHHHHHHHHHCCCCeEEEEE-eCCCC----ceEEEEcCCCCcchhhhhCCC
Q 042780 65 LEVKGETQIVNLSEKLNAGGIAHKLWIE-QPENI----PTCLATKPYPKSTVSLVFKKL 118 (122)
Q Consensus 65 Lkv~~e~eL~~l~~~a~~~gi~~~l~~e-~~~gt----~TvlaigP~~~~~i~~itg~L 118 (122)
+-.++++.+..+.+.+.+.|.......+ .+.|. .+|.-..+...+.|+.++..|
T Consensus 30 ~~f~~~~~~~~f~~~~~~~g~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~I~~~~~~l 88 (104)
T PF06877_consen 30 FYFEDEEDAEKFAEELEKLGYEVESAEEDEEDGDGPYCLDISREMVLDYEDINAITQEL 88 (104)
T ss_dssp EEES-HHHHHHHHHHHHHHS---B----B-SS-SSBEEEEEEEEE-S-HHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHCCCEEEEeecccCCCCceEEEEEEEecCCCHHHHHHHHHHH
Confidence 4578999999999999999988655444 33333 445555555556777766543
No 112
>PTZ00413 lipoate synthase; Provisional
Probab=26.67 E-value=1.3e+02 Score=25.95 Aligned_cols=24 Identities=4% Similarity=0.044 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHCCCCeEEEE
Q 042780 68 KGETQIVNLSEKLNAGGIAHKLWI 91 (122)
Q Consensus 68 ~~e~eL~~l~~~a~~~gi~~~l~~ 91 (122)
.|.+|..++++.+++.|+.|++++
T Consensus 177 lD~eEp~~vA~av~~~Gl~~~VVT 200 (398)
T PTZ00413 177 LDPNEPEKVAKAVAEMGVDYIVMT 200 (398)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEE
Confidence 478999999999999999988886
No 113
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=25.92 E-value=67 Score=17.24 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=12.3
Q ss_pred EEEeCCCCceEEEEcCC
Q 042780 90 WIEQPENIPTCLATKPY 106 (122)
Q Consensus 90 ~~e~~~gt~TvlaigP~ 106 (122)
|.++| |.++.|.+||.
T Consensus 3 W~~v~-g~l~~isvg~~ 18 (35)
T smart00706 3 WTQVP-GELVQVSVGPS 18 (35)
T ss_pred cEEcC-CCEEEEEECCC
Confidence 45664 89999999983
No 114
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=25.81 E-value=1.5e+02 Score=17.54 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHCCCCeEEEE----EeCCCCceEEEEcCCCCcchhh
Q 042780 72 QIVNLSEKLNAGGIAHKLWI----EQPENIPTCLATKPYPKSTVSL 113 (122)
Q Consensus 72 eL~~l~~~a~~~gi~~~l~~----e~~~gt~TvlaigP~~~~~i~~ 113 (122)
.+.+..+.+++.|+...... ..++|+ |+.--|.+-+.+++
T Consensus 10 ~~~~a~~~l~~~g~~~~~~~~~~~~~~~g~--V~~Q~P~~G~~v~~ 53 (63)
T PF03793_consen 10 TYDEAKSILEAAGLTVNVVEEYSDSVPKGT--VISQSPAPGTKVKK 53 (63)
T ss_dssp BHHHHHHHHHHTT-EEEEEEEEESSSSTTS--EEEESSCTTSEEET
T ss_pred cHHHHHHHHHHCCCEEEEEEEecCCCCCCE--EEEEECCCCCCcCC
Confidence 35678888999999655555 345555 99999998887754
No 115
>PRK04998 hypothetical protein; Provisional
Probab=25.71 E-value=1e+02 Score=20.46 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=19.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHHCC
Q 042780 62 KVTLEVKGETQIVNLSEKLNAGG 84 (122)
Q Consensus 62 KVvLkv~~e~eL~~l~~~a~~~g 84 (122)
.|.+.+.|++++.++++++.+..
T Consensus 60 tv~v~v~s~eq~~~iY~~L~~~~ 82 (88)
T PRK04998 60 SITITATSIEQVETLYEELAKIE 82 (88)
T ss_pred EEEEEECCHHHHHHHHHHHhcCC
Confidence 47788999999999999988643
No 116
>PTZ00445 p36-lilke protein; Provisional
Probab=24.99 E-value=1.3e+02 Score=24.03 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=29.7
Q ss_pred EEEEcCCHHHHHHHHHHHHHCCCCeEEEE---E--e-CCCCceEEEEc
Q 042780 63 VTLEVKGETQIVNLSEKLNAGGIAHKLWI---E--Q-PENIPTCLATK 104 (122)
Q Consensus 63 VvLkv~~e~eL~~l~~~a~~~gi~~~l~~---e--~-~~gt~Tvlaig 104 (122)
++-.+. .++..+.+++++.||+.++++ | + +++..+.|+=+
T Consensus 72 ~~~~~t--pefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~ 117 (219)
T PTZ00445 72 VLTSVT--PDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGD 117 (219)
T ss_pred hhccCC--HHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechH
Confidence 444443 479999999999999999998 2 2 35677777644
No 117
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=24.87 E-value=2.6e+02 Score=22.89 Aligned_cols=58 Identities=10% Similarity=0.166 Sum_probs=39.6
Q ss_pred CCCeEEEEEcCC--HHHHHH-HHHHHHHCCCCeEEEE---Ee----CCCCceEEEE---cCCCCcchhhhh
Q 042780 58 NSMHKVTLEVKG--ETQIVN-LSEKLNAGGIAHKLWI---EQ----PENIPTCLAT---KPYPKSTVSLVF 115 (122)
Q Consensus 58 ~g~~KVvLkv~~--e~eL~~-l~~~a~~~gi~~~l~~---e~----~~gt~Tvlai---gP~~~~~i~~it 115 (122)
.|..+.|+=+.| +.++.. |-..++..|||++++- ++ .-.+.||+|| |+..+..+++++
T Consensus 146 kkKAkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVktKaeLG~AIGkKtravVAItD~g~ed~~~l~~lv 216 (263)
T PTZ00222 146 KKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVKDMARLGDAIGRKTATCVAITDVNAEDEAALKNLI 216 (263)
T ss_pred cCCceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHHCCCCCeEEEEeeCCcccHHHHHHHH
Confidence 688888888886 455544 8889999999999886 22 2225677776 554444555544
No 118
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=24.80 E-value=1.2e+02 Score=19.20 Aligned_cols=29 Identities=14% Similarity=0.391 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
.+..-+.+.+++ +++..+.+.+.++|++.
T Consensus 54 ~~~~hiaf~v~~-~d~~~~~~~l~~~G~~~ 82 (113)
T cd08345 54 RTYTHIAFQIQS-EEFDEYTERLKALGVEM 82 (113)
T ss_pred CCccEEEEEcCH-HHHHHHHHHHHHcCCcc
Confidence 345578899987 68999999999999885
No 119
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=24.71 E-value=2e+02 Score=23.94 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=34.4
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEE
Q 042780 61 HKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLAT 103 (122)
Q Consensus 61 ~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~Tvlai 103 (122)
..|.+-++|.++|..|.+.+...+.+..+..++.+|..- +++
T Consensus 104 ~~i~~~Vds~~~l~~l~~~a~~~~~~~~V~l~IDtGm~R-~G~ 145 (388)
T cd06813 104 ATITLMVDSVEHLDLLDAVAAPMRVEVRVCIDIDASLRF-GGL 145 (388)
T ss_pred CeEEEEEcCHHHHHHHHHHHHhcCCceEEEEEECCCccc-ccc
Confidence 357788999999999999998889888888999887653 444
No 120
>PRK10057 rpsV 30S ribosomal subunit S22; Reviewed
Probab=24.68 E-value=53 Score=19.59 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=12.0
Q ss_pred CCCCeEEEEEcCCH
Q 042780 57 INSMHKVTLEVKGE 70 (122)
Q Consensus 57 ~~g~~KVvLkv~~e 70 (122)
+..|+|||++.+++
T Consensus 17 lSnqrKvV~Egd~~ 30 (44)
T PRK10057 17 ISNQRKVVTEGDKS 30 (44)
T ss_pred eccceeEEeeCCcc
Confidence 48999999998875
No 121
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=24.54 E-value=1.6e+02 Score=18.27 Aligned_cols=38 Identities=8% Similarity=-0.073 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHCCCCeEEEE---EeCCCCceEEEEcCCCC
Q 042780 71 TQIVNLSEKLNAGGIAHKLWI---EQPENIPTCLATKPYPK 108 (122)
Q Consensus 71 ~eL~~l~~~a~~~gi~~~l~~---e~~~gt~TvlaigP~~~ 108 (122)
..+..-.+.|...|+++.++. |...|+.++--......
T Consensus 38 ~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~~~~~~ 78 (91)
T cd00860 38 EKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGDL 78 (91)
T ss_pred CCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCcc
Confidence 578888889999999999998 56677888766654433
No 122
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.20 E-value=1.2e+02 Score=18.27 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=20.0
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHH
Q 042780 60 MHKVTLEVKGETQIVNLSEKLNA 82 (122)
Q Consensus 60 ~~KVvLkv~~e~eL~~l~~~a~~ 82 (122)
.-.+.++++|.++|.++.+.+++
T Consensus 41 ~~~~~vev~~~~~l~~i~~~L~~ 63 (74)
T cd04887 41 VRDITVDAPSEEHAETIVAAVRA 63 (74)
T ss_pred EEEEEEEcCCHHHHHHHHHHHhc
Confidence 35678999999999999999885
No 123
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=23.99 E-value=1.8e+02 Score=22.14 Aligned_cols=45 Identities=13% Similarity=0.008 Sum_probs=33.9
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCC-ceEEEEcC
Q 042780 61 HKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENI-PTCLATKP 105 (122)
Q Consensus 61 ~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt-~TvlaigP 105 (122)
.-+..-++|.+.+..|.+.+.+.|.+..++.++.-|+ ++=+|+-|
T Consensus 93 ~~~~~~I~s~~~~~~l~~~a~~~g~~~~v~l~id~~~Gm~R~Gi~~ 138 (224)
T cd06824 93 FDWVHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNISGEDSKSGVAP 138 (224)
T ss_pred CCEEEecCCHHHHHHHHHHHHhcCCCCcEEEEEEcCCCCCCCCCCH
Confidence 3477889999999999999998887777777776543 34456655
No 124
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=23.92 E-value=2e+02 Score=19.47 Aligned_cols=47 Identities=11% Similarity=0.188 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEE-EeCCCCceEEEEcC
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWI-EQPENIPTCLATKP 105 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~-e~~~gt~TvlaigP 105 (122)
.|..-|.+.+++ ++|.++.+.+++.|+...-.. ..+.+..++-...|
T Consensus 58 ~~~~hiaf~v~~-~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DP 105 (131)
T cd08363 58 QSYTHIAFTIED-SEFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDP 105 (131)
T ss_pred ccceEEEEEecH-HHHHHHHHHHHHcCCcccCCCccccCcceEEEEECC
Confidence 456679999987 589999999999999753111 12234455555555
No 125
>PF07997 DUF1694: Protein of unknown function (DUF1694); InterPro: IPR012543 This family contains many hypothetical proteins.; PDB: 2OHW_A.
Probab=23.91 E-value=2.2e+02 Score=20.20 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=26.9
Q ss_pred CCeEEEEEcC-CHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEc
Q 042780 59 SMHKVTLEVK-GETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATK 104 (122)
Q Consensus 59 g~~KVvLkv~-~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~Tvlaig 104 (122)
.-.++.+... +..-+....+.|++.|+++.++.+....+...|.+-
T Consensus 62 ~~~~l~ing~l~~~~~~~YiklA~~~~~~fTiv~~~~~~~~~gLVv~ 108 (120)
T PF07997_consen 62 PNYKLKINGNLDYSFQSKYIKLANKHGIPFTIVNDPEYHSPFGLVVA 108 (120)
T ss_dssp SSEEEEEETTS-HHHHHHHHHHHHHTT--EEEE---SS--SEEEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHHHcCCCEEEeCCCCccCCeEEEEE
Confidence 3445555544 566788899999999999999997655555555553
No 126
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=22.52 E-value=2.1e+02 Score=18.10 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=25.8
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHCCCCeEE
Q 042780 60 MHKVTLEVKGETQIVNLSEKLNAGGIAHKL 89 (122)
Q Consensus 60 ~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l 89 (122)
..-+...+.+.++|.++.+.+++.|+...-
T Consensus 74 ~~~i~~~~~~~~dl~~~~~~l~~~g~~~~~ 103 (128)
T PF00903_consen 74 GHHIAFLAFDVDDLDAAYERLKAQGVEIVE 103 (128)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHTTGEEEE
T ss_pred ceeEEEEeccHHHHHHHHHHHhhcCccEEe
Confidence 445899999999999999999999977653
No 127
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=22.51 E-value=2e+02 Score=21.73 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=34.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCC-ceEEEEcC
Q 042780 62 KVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENI-PTCLATKP 105 (122)
Q Consensus 62 KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt-~TvlaigP 105 (122)
.+..-+.|.+++..|.+.+...|.+..++..+..|. .+=+|+-|
T Consensus 92 ~~~~~v~s~~~l~~l~~~a~~~~~~~~v~lkvdtG~~~~R~G~~~ 136 (222)
T cd00635 92 DLIHSVDSLKLAEELNKRAEKEGRVLDVLVQVNIGGEESKSGVAP 136 (222)
T ss_pred CEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCH
Confidence 477788999999999999988888887888887774 34556655
No 128
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=22.40 E-value=1.8e+02 Score=23.35 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=29.5
Q ss_pred EEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCC
Q 042780 63 VTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENI 97 (122)
Q Consensus 63 VvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt 97 (122)
+.+-++|.++|..|.+.+++.|.+..+..++.+|.
T Consensus 93 ~~~~vds~~el~~l~~~~~~~~~~~~v~lrin~g~ 127 (368)
T cd06810 93 DHIVVDSLDELERLNELAKKLGPKARILLRVNPDV 127 (368)
T ss_pred CEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 47778999999999999998888888888877764
No 129
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=22.37 E-value=1.4e+02 Score=18.66 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHCCCCeEEEE---EeCCCCceEEEEcCC
Q 042780 71 TQIVNLSEKLNAGGIAHKLWI---EQPENIPTCLATKPY 106 (122)
Q Consensus 71 ~eL~~l~~~a~~~gi~~~l~~---e~~~gt~TvlaigP~ 106 (122)
..+....+.|...|+++.++. |...|+.++--....
T Consensus 41 ~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~~~~ 79 (94)
T cd00738 41 RKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSRDTG 79 (94)
T ss_pred cCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEECCCC
Confidence 578888999999999999998 566777776665543
No 130
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=22.15 E-value=1.1e+02 Score=19.88 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.0
Q ss_pred EEEEEcCCHHHHHHHHHHHHHC
Q 042780 62 KVTLEVKGETQIVNLSEKLNAG 83 (122)
Q Consensus 62 KVvLkv~~e~eL~~l~~~a~~~ 83 (122)
.|-+.+.|++++.++++++++.
T Consensus 57 tv~v~v~s~eq~~~iy~~L~~~ 78 (85)
T PF04359_consen 57 TVSVTVESAEQVDAIYRELKAH 78 (85)
T ss_dssp EEEEEESSHHHHHHHHHHHTTS
T ss_pred EEEEEECCHHHHHHHHHHhccC
Confidence 4778899999999999998864
No 131
>PRK14422 acylphosphatase; Provisional
Probab=21.99 E-value=99 Score=20.81 Aligned_cols=43 Identities=12% Similarity=-0.031 Sum_probs=28.6
Q ss_pred HhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEe
Q 042780 48 TLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQ 93 (122)
Q Consensus 48 ~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~ 93 (122)
+.-|.. ..-+|.-.|++..+ ++.+.++.+.+++ |=+.+-|.++
T Consensus 34 l~G~V~-N~~dG~Vei~~~G~-~~~i~~f~~~l~~-gp~~a~V~~i 76 (93)
T PRK14422 34 LTGYAA-NLADGRVQVVAEGP-RAACEKLLQLLRG-DDTPGRVDKV 76 (93)
T ss_pred CEEEEE-ECCCCCEEEEEEcC-HHHHHHHHHHHHh-CCCCcEEEEE
Confidence 456774 44567678888886 4579999998887 4444445443
No 132
>PRK14426 acylphosphatase; Provisional
Probab=21.92 E-value=92 Score=20.85 Aligned_cols=43 Identities=21% Similarity=0.104 Sum_probs=26.9
Q ss_pred HhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEE
Q 042780 48 TLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIE 92 (122)
Q Consensus 48 ~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e 92 (122)
+.-|.. ..-+|.-.|+++.+ ++.+.++.+.++...=+...|.+
T Consensus 32 l~G~V~-N~~dG~Vei~~~G~-~~~i~~f~~~l~~g~P~~a~V~~ 74 (92)
T PRK14426 32 LTGYAK-NLDDGSVEVVACGE-EEQVEKLMEWLKEGGPRSARVDR 74 (92)
T ss_pred CEEEEE-ECCCCcEEEEEEeC-HHHHHHHHHHHhcCCCCCeEEEE
Confidence 456764 33466677888776 45788888888753234444443
No 133
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=21.66 E-value=1.5e+02 Score=19.33 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=8.8
Q ss_pred HHHCCCCeEEEEE
Q 042780 80 LNAGGIAHKLWIE 92 (122)
Q Consensus 80 a~~~gi~~~l~~e 92 (122)
+++.||+++.++|
T Consensus 73 l~~~gi~~~~~~Q 85 (114)
T PF02373_consen 73 LKKAGIPVYRFVQ 85 (114)
T ss_dssp HHHTTS--EEEEE
T ss_pred eeccCcccccceE
Confidence 6688999998875
No 134
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=21.61 E-value=2.5e+02 Score=21.53 Aligned_cols=42 Identities=10% Similarity=0.131 Sum_probs=32.0
Q ss_pred EEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEc
Q 042780 63 VTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATK 104 (122)
Q Consensus 63 VvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~Tvlaig 104 (122)
|+++++|.+|+.++.+.....-...++..+.-.|.+=+=..|
T Consensus 1 i~~~~~~~~E~~~fle~l~~~~~~~~~~v~~k~n~l~I~i~G 42 (190)
T PF09840_consen 1 ISFKFRDDEECEEFLERLSKMVKSIYIYVEVKGNSLKIEIQG 42 (190)
T ss_pred CeEEcCChHHHHHHHHHHHhhccCcEEEEEEeCCEEEEEEec
Confidence 578999999999999999988555555566656666555566
No 135
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=21.54 E-value=1.9e+02 Score=22.36 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
.+..-+.+.+++.+++.++.+.+++.|+...
T Consensus 59 ~~~~hiaf~v~~~~dl~~~~~~l~~~Gv~v~ 89 (294)
T TIGR02295 59 AALSYIGFRVSKEEDLDKAADFFQKLGHPVR 89 (294)
T ss_pred cCccEEEEEeCCHHHHHHHHHHHHhcCCcEE
Confidence 4566789999999999999999999998754
No 136
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=21.42 E-value=97 Score=24.82 Aligned_cols=29 Identities=24% Similarity=0.099 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEcCCC
Q 042780 68 KGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYP 107 (122)
Q Consensus 68 ~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~TvlaigP~~ 107 (122)
.++.....|.+.+++. |+.+|+|++||..
T Consensus 98 ~~~~A~~~l~~~~~~~-----------~~~vtivaiGPLT 126 (304)
T cd02650 98 EDESAADFLIELANEY-----------PGELTLVAVGPLT 126 (304)
T ss_pred CccCHHHHHHHHHHhC-----------CCCeEEEECCcHH
Confidence 3445666777777653 6789999999964
No 137
>PRK14440 acylphosphatase; Provisional
Probab=21.31 E-value=1e+02 Score=20.65 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=26.6
Q ss_pred HhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEE
Q 042780 48 TLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIE 92 (122)
Q Consensus 48 ~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e 92 (122)
+.-|.. ..-+|.-.|++..+ ++.+.++.+.+++ |=+...|.+
T Consensus 31 l~G~V~-N~~dG~Vei~~~G~-~~~v~~f~~~l~~-gp~~a~V~~ 72 (90)
T PRK14440 31 IKGYAK-NLPDGSVEVVAEGY-EEALSKLLERIKQ-GPPAAEVEK 72 (90)
T ss_pred CEEEEE-ECCCCCEEEEEEcC-HHHHHHHHHHHhh-CCCCcEEEE
Confidence 455764 33466677777776 4678888888884 544544543
No 138
>PF11869 DUF3389: Protein of unknown function (DUF3389); InterPro: IPR021811 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=21.27 E-value=1.7e+02 Score=19.61 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=18.3
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHH
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKL 80 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a 80 (122)
.|--|=-+|-+|+++|..|.+..
T Consensus 48 g~~vkWSikLD~eeQL~~ia~~l 70 (75)
T PF11869_consen 48 GGEVKWSIKLDNEEQLQAIAEEL 70 (75)
T ss_pred CcceEEEEEcCCHHHHHHHHHHh
Confidence 56677789999999998887653
No 139
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.27 E-value=2.5e+02 Score=18.27 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
.|.--|-+++++. ++.++.+.+++.|+++.-.
T Consensus 40 ~a~vlvGi~~~~~-~~~~l~~~l~~~g~~~~dl 71 (81)
T cd04907 40 YGRVLVGIQVPDA-DLDELKERLDALGYPYQEE 71 (81)
T ss_pred ceeEEEEEEeChH-HHHHHHHHHHHcCCCeEEC
Confidence 4555567788876 9999999999999887544
No 140
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=21.25 E-value=2.6e+02 Score=23.08 Aligned_cols=38 Identities=13% Similarity=-0.061 Sum_probs=31.6
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCCc
Q 042780 61 HKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIP 98 (122)
Q Consensus 61 ~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~ 98 (122)
..|.+-++|.+++..|.+.+++.|.+..+..|+..|..
T Consensus 99 ~~i~~~vds~~~l~~L~~~a~~~g~~~~v~i~vn~g~~ 136 (382)
T cd06818 99 FEFFCLVDSVDNVRALAAFFAALERPLNVLIELGVPGG 136 (382)
T ss_pred CCEEEEECCHHHHHHHHHHHHhcCCceEEEEEECCCCC
Confidence 34677899999999999999999988888889886643
No 141
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=21.20 E-value=2.4e+02 Score=18.98 Aligned_cols=27 Identities=11% Similarity=0.410 Sum_probs=23.2
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 60 MHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 60 ~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
..-+.+.+++ +++..+.+.+++.|++.
T Consensus 67 ~~Hiaf~v~~-~~ld~~~~~l~~~gv~~ 93 (131)
T cd08364 67 YNHIAFKISD-SDVDEYTERIKALGVEM 93 (131)
T ss_pred ceEEEEEcCH-HHHHHHHHHHHHCCCEE
Confidence 4559999987 79999999999999875
No 142
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=21.02 E-value=2.1e+02 Score=23.31 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=34.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEcC
Q 042780 62 KVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKP 105 (122)
Q Consensus 62 KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~TvlaigP 105 (122)
.+..-++|.++|..|.+.+...|.+..++.++..|. .=.|+-|
T Consensus 95 ~l~~~v~s~~~l~~l~~~a~~~~~~~~V~l~VdtGm-~R~Gi~~ 137 (367)
T TIGR00492 95 DLTTTVHSVEQLQALEEALLKEPKRLKVHLKIDTGM-NRLGVKP 137 (367)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCceEEEEEeeCCC-CCCCCCh
Confidence 367889999999999999998898888888888774 4445544
No 143
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=20.54 E-value=1.5e+02 Score=21.56 Aligned_cols=33 Identities=15% Similarity=0.079 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEcCCCCcchhhhh
Q 042780 72 QIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVF 115 (122)
Q Consensus 72 eL~~l~~~a~~~gi~~~l~~e~~~gt~TvlaigP~~~~~i~~it 115 (122)
.+.+..+.+++.||.. .++|+||+..+.+..|.
T Consensus 128 ~~~~~~~~~~~~gi~i-----------~~vgig~~~~~~L~~IA 160 (186)
T cd01480 128 GIEKAVNEADHLGIKI-----------FFVAVGSQNEEPLSRIA 160 (186)
T ss_pred hHHHHHHHHHHCCCEE-----------EEEecCccchHHHHHHH
Confidence 5677788888888876 46678876656666554
No 144
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=20.49 E-value=1.2e+02 Score=18.95 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHC
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAG 83 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~ 83 (122)
...-.+.+.++|.++|..+.+++++.
T Consensus 47 ~~~~~l~v~V~d~~~L~~ii~~L~~i 72 (80)
T PF13291_consen 47 TARITLTVEVKDLEHLNQIIRKLRQI 72 (80)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHCTS
T ss_pred EEEEEEEEEECCHHHHHHHHHHHHCC
Confidence 35667889999999999999998753
No 145
>PRK14425 acylphosphatase; Provisional
Probab=20.44 E-value=98 Score=20.87 Aligned_cols=42 Identities=7% Similarity=0.045 Sum_probs=28.1
Q ss_pred HhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEE
Q 042780 48 TLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIE 92 (122)
Q Consensus 48 ~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e 92 (122)
+.-|.. ..-+|.-.|++..++ ++|.++.+.++. |=+.+-|..
T Consensus 34 l~G~V~-N~~dGsVei~~qG~~-~~le~f~~~l~~-gp~~a~V~~ 75 (94)
T PRK14425 34 LTGWVR-NESDGSVTALIAGPD-SAISAMIERFRR-GPPGASVSG 75 (94)
T ss_pred CEEEEE-ECCCCeEEEEEEeCH-HHHHHHHHHHhh-CCCceEEEE
Confidence 456774 344666788887775 468889888884 655555553
No 146
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=20.05 E-value=4.1e+02 Score=20.38 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHCCCC
Q 042780 59 SMHKVTLEVKGETQIVNLSEKLNAGGIA 86 (122)
Q Consensus 59 g~~KVvLkv~~e~eL~~l~~~a~~~gi~ 86 (122)
|..=+.++++|.+++.++.+.+++.|++
T Consensus 196 ~~~Hiaf~v~d~~~v~~~~~~l~~~G~~ 223 (294)
T TIGR02295 196 RLHHIAYWVHDPLNIIKACDILASAGLS 223 (294)
T ss_pred ceeeEEEEcCCHHHHHHHHHHHHhCCCC
Confidence 4456999999999999999999999976
Done!