Query 042780
Match_columns 122
No_of_seqs 121 out of 506
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 16:23:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rzw_A Protein AF2095(GR4); be 100.0 3.7E-45 1.3E-49 262.8 11.5 110 6-122 1-115 (123)
2 1xty_A PTH, peptidyl-tRNA hydr 100.0 3.9E-45 1.3E-49 261.1 7.9 113 7-121 1-120 (120)
3 1rlk_A Hypothetical protein TA 100.0 4.4E-44 1.5E-48 254.7 8.8 110 6-121 1-117 (117)
4 2zv3_A PTH, peptidyl-tRNA hydr 100.0 7E-44 2.4E-48 253.0 9.1 108 8-121 1-115 (115)
5 1wn2_A Peptidyl-tRNA hydrolase 100.0 6.1E-44 2.1E-48 255.5 8.6 110 6-121 5-121 (121)
6 1q7s_A BIT1, protein CGI-147; 100.0 1E-43 3.5E-48 252.8 8.1 110 6-121 1-117 (117)
7 2gax_A Hypothetical protein AT 99.9 2.3E-23 7.9E-28 151.1 8.6 111 7-122 3-135 (135)
8 3e5d_A Putative glyoxalase I; 67.7 19 0.00065 22.3 7.3 48 58-105 70-118 (127)
9 1uxy_A MURB, uridine diphospho 64.5 14 0.00049 29.3 6.0 36 55-90 9-44 (340)
10 1uta_A FTSN, MSGA, cell divisi 62.5 10 0.00035 23.5 3.9 47 68-117 18-65 (81)
11 2ki0_A DS119; beta-alpha-beta, 59.7 3 0.0001 22.8 0.8 23 68-90 12-34 (36)
12 3r4q_A Lactoylglutathione lyas 59.5 28 0.00094 23.2 6.0 30 59-88 76-105 (160)
13 3tx1_A UDP-N-acetylenolpyruvoy 56.3 20 0.00067 28.3 5.4 44 46-90 41-84 (322)
14 2rbb_A Glyoxalase/bleomycin re 54.0 40 0.0014 21.5 6.4 44 62-105 78-122 (141)
15 1twu_A Hypothetical protein YY 53.5 25 0.00085 22.6 4.8 30 59-88 77-106 (139)
16 1hsk_A UDP-N-acetylenolpyruvoy 52.1 22 0.00075 27.8 5.0 43 47-90 36-78 (326)
17 3sxu_A DNA polymerase III subu 51.1 50 0.0017 23.2 6.4 46 60-105 39-89 (150)
18 2a4x_A Mitomycin-binding prote 49.1 49 0.0017 21.0 7.7 48 58-105 70-118 (138)
19 3i99_A UDP-N-acetylenolpyruvoy 46.8 9.5 0.00032 30.7 2.2 44 46-90 17-60 (357)
20 2kjz_A ATC0852; protein of unk 46.4 30 0.001 22.7 4.4 30 58-87 85-114 (144)
21 1xqa_A Glyoxalase/bleomycin re 46.2 30 0.001 21.1 4.2 30 58-87 59-88 (113)
22 2rk0_A Glyoxalase/bleomycin re 46.1 29 0.00098 22.1 4.2 31 58-88 71-101 (136)
23 3rja_A Carbohydrate oxidase; p 44.8 46 0.0016 27.3 6.1 47 44-90 18-66 (473)
24 1x60_A Sporulation-specific N- 43.1 11 0.00038 22.9 1.6 48 67-117 17-65 (79)
25 1mli_A Muconolactone isomerase 40.5 79 0.0027 21.0 5.9 86 10-109 1-90 (96)
26 3cpg_A Uncharacterized protein 38.2 54 0.0019 24.7 5.2 37 61-97 135-171 (282)
27 2hfv_A Hypothetical protein RP 37.7 68 0.0023 21.3 5.0 35 58-92 20-54 (97)
28 2l48_A N-acetylmuramoyl-L-alan 37.1 80 0.0028 20.6 5.1 57 58-116 17-73 (85)
29 3ct8_A Protein BH2160, putativ 36.3 44 0.0015 21.9 3.9 30 58-87 85-114 (146)
30 3rhe_A NAD-dependent benzaldeh 34.2 99 0.0034 20.3 7.2 31 58-88 66-96 (148)
31 1v95_A Nuclear receptor coacti 33.0 11 0.00037 26.5 0.4 37 71-107 47-86 (130)
32 4feh_A Oxidoreductase DPRE1; a 32.7 67 0.0023 26.5 5.2 42 49-90 31-74 (481)
33 2y3s_A TAML; oxidoreductase; H 31.1 98 0.0034 25.7 6.0 47 44-90 40-88 (530)
34 3pop_A GILR oxidase; FAD bindi 30.6 1E+02 0.0035 25.5 6.0 47 44-90 16-64 (501)
35 3v7q_A Probable ribosomal prot 30.4 95 0.0033 19.9 4.8 42 46-91 25-68 (101)
36 3llx_A Predicted amino acid al 30.2 78 0.0027 24.7 5.1 45 61-106 107-151 (376)
37 3gwq_A D-serine deaminase; str 29.4 1.2E+02 0.004 24.4 6.1 37 61-97 141-177 (426)
38 2ba3_A NIKA; dimer, bacterial 29.0 74 0.0025 17.7 3.6 28 58-86 13-40 (51)
39 3bqx_A Glyoxalase-related enzy 28.9 1.2E+02 0.004 19.5 6.1 30 58-87 68-97 (150)
40 3j21_Z 50S ribosomal protein L 28.5 81 0.0028 20.1 4.1 41 46-90 21-63 (99)
41 3rri_A Glyoxalase/bleomycin re 28.5 1E+02 0.0035 19.1 4.6 29 59-87 67-95 (135)
42 3bzy_B ESCU; auto cleavage pro 27.7 1.1E+02 0.0037 19.5 4.6 30 58-88 15-44 (83)
43 3lm4_A Catechol 2,3-dioxygenas 27.5 1.4E+02 0.0048 22.5 6.0 31 58-88 66-96 (339)
44 1u7i_A Hypothetical protein; s 27.0 66 0.0023 20.8 3.6 24 61-85 80-103 (136)
45 3pm9_A Putative oxidoreductase 26.8 49 0.0017 27.2 3.4 44 47-90 36-81 (476)
46 3sk2_A EHPR; antibiotic resist 26.5 1.2E+02 0.0042 18.9 7.1 39 58-96 71-113 (132)
47 1cbf_A Cobalt-precorrin-4 tran 26.0 22 0.00076 26.9 1.1 22 91-112 16-37 (285)
48 2ybo_A Methyltransferase; SUMT 25.4 29 0.001 26.5 1.7 21 92-112 21-41 (294)
49 1e2b_A Enzyme IIB-cellobiose; 25.1 70 0.0024 20.8 3.4 57 60-116 3-69 (106)
50 2bvf_A 6-hydroxy-D-nicotine ox 24.8 1.2E+02 0.004 24.4 5.3 34 57-90 35-68 (459)
51 2h9z_A Hypothetical protein HP 24.7 81 0.0028 20.0 3.5 24 61-84 57-80 (86)
52 3t9z_A GLNK3, nitrogen regulat 24.0 1.3E+02 0.0043 20.2 4.6 32 60-92 1-32 (118)
53 2wdx_A Putative hexose oxidase 23.9 1.2E+02 0.004 25.2 5.2 33 58-90 55-87 (523)
54 4h3d_A 3-dehydroquinate dehydr 23.6 1.3E+02 0.0043 22.7 5.0 34 58-91 17-52 (258)
55 1w41_A 50S ribosomal protein L 23.4 85 0.0029 20.0 3.5 41 46-90 22-64 (101)
56 3bzq_A Nitrogen regulatory pro 23.3 1E+02 0.0035 20.0 3.9 32 59-91 2-33 (114)
57 2j66_A BTRK, decarboxylase; bu 23.1 91 0.0031 24.6 4.3 34 64-97 110-143 (428)
58 3mhy_A PII-like protein PZ; PI 23.0 1.1E+02 0.0036 20.1 4.0 32 60-92 1-32 (112)
59 2ipi_A Aclacinomycin oxidoredu 22.9 1.2E+02 0.0042 24.9 5.2 34 57-90 52-85 (521)
60 1vr4_A Hypothetical protein AP 22.9 1.4E+02 0.0047 19.6 4.5 35 70-104 59-98 (103)
61 3cpq_A 50S ribosomal protein L 22.6 1.2E+02 0.0042 19.7 4.2 41 46-90 27-69 (110)
62 1xfc_A Alanine racemase; alpha 22.0 1.1E+02 0.0038 23.7 4.6 35 63-97 104-138 (384)
63 3sy1_A UPF0001 protein YGGS; e 21.9 1E+02 0.0034 23.1 4.1 44 62-105 99-143 (245)
64 2ohw_A YUEI protein; structura 21.8 1.7E+02 0.006 20.1 5.1 43 61-103 65-108 (133)
65 3oaj_A Putative ring-cleaving 21.6 2.7E+02 0.0093 21.2 8.1 61 60-120 216-289 (335)
66 1mpy_A Catechol 2,3-dioxygenas 21.4 1.6E+02 0.0056 21.3 5.2 30 59-88 64-93 (307)
67 1zr6_A Glucooligosaccharide ox 21.3 1.5E+02 0.005 24.3 5.3 34 57-90 39-72 (503)
68 3ncq_A Nitrogen regulatory pro 21.3 1.5E+02 0.0051 19.9 4.5 32 60-92 1-32 (119)
69 3kw3_A Alanine racemase; niaid 21.2 1E+02 0.0036 24.4 4.3 34 63-96 114-147 (376)
70 1twi_A Diaminopimelate decarbo 20.6 1.1E+02 0.0038 24.1 4.3 34 63-96 128-162 (434)
71 3ouv_A Serine/threonine protei 20.5 1.4E+02 0.0048 17.4 4.3 39 72-112 17-59 (71)
72 3anu_A D-serine dehydratase; P 20.5 63 0.0021 24.9 2.7 36 62-97 106-141 (376)
73 2aif_A Ribosomal protein L7A; 20.4 94 0.0032 21.2 3.4 65 46-114 47-122 (135)
74 1s4d_A Uroporphyrin-III C-meth 20.4 41 0.0014 25.4 1.6 19 94-112 13-31 (280)
75 2wl9_A Catechol 2,3-dioxygenas 20.3 1.3E+02 0.0044 22.0 4.4 30 59-88 209-238 (305)
76 2vt1_B Surface presentation of 20.3 1.3E+02 0.0044 19.6 3.9 31 57-88 14-44 (93)
77 3kdv_A DDRB, DNA damage respon 20.2 58 0.002 24.0 2.3 25 60-84 17-41 (184)
78 3rpf_A Molybdopterin synthase 20.2 1.5E+02 0.0052 20.8 4.5 42 59-100 45-92 (148)
79 3r79_A Uncharacterized protein 20.0 1.6E+02 0.0055 22.0 4.9 44 62-105 99-143 (244)
No 1
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=100.00 E-value=3.7e-45 Score=262.85 Aligned_cols=110 Identities=25% Similarity=0.306 Sum_probs=104.1
Q ss_pred ceeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhcCChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCC
Q 042780 6 DVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGI 85 (122)
Q Consensus 6 ~~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~~~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi 85 (122)
.++|||||||+||+| |+||+||||||||+++|+.+ +.+.+++|.. .||+||||+++|+++|.+|.++|++.||
T Consensus 1 ~~~k~vivVr~DL~M--~~GKiaAQ~~HAa~~~~~~~-~~~~l~~W~~----~G~~Kvvlk~~~e~el~~L~~~a~~~gl 73 (123)
T 1rzw_A 1 MTLKQVIVVRDDLKL--SRGKLAVQVAHAAIIGYLKS-DSSLRRKWLD----EGQKKVVLKVKSLEELLGIKHKAESLGL 73 (123)
T ss_dssp CCCEEEEEEECCCSS--CTTHHHHHHHHHHHHHHHHH-HTTHHHHTGG----GCSSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEEECCCCC--CcchHHHHHHHHHHHHHHHc-CHHHHHHHHH----CCCcEEEEecCCHHHHHHHHHHHHHCCC
Confidence 368999999999999 99999999999999999998 5566788887 9999999999999999999999999999
Q ss_pred CeEEE-----EEeCCCCceEEEEcCCCCcchhhhhCCCCCCC
Q 042780 86 AHKLW-----IEQPENIPTCLATKPYPKSTVSLVFKKLKLCK 122 (122)
Q Consensus 86 ~~~l~-----~e~~~gt~TvlaigP~~~~~i~~itg~LkLl~ 122 (122)
++++| +|+||||.|||||||+|++.||+|||+||||+
T Consensus 74 ~~~~I~DAG~Tei~pgt~TvlaigP~p~~~vd~itg~LkL~~ 115 (123)
T 1rzw_A 74 VTGLVQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLLK 115 (123)
T ss_dssp CEEEECCTTCCSCSTTSCEEEEEEEECHHHHHHHHTCSCCCC
T ss_pred CEEEEECCCCcccCCCCEEEEEeCcCCHHHHHHhcCCCeecc
Confidence 99998 49999999999999999999999999999996
No 2
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=100.00 E-value=3.9e-45 Score=261.10 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=103.0
Q ss_pred eeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHh-cC-ChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCC
Q 042780 7 VLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSH-KD-DPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGG 84 (122)
Q Consensus 7 ~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~-~~-~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~g 84 (122)
++|||||||+||+| |+||++|||||||+++|+.+ ++ ++++.+|+..|+..||+||||+++|+++|++|.++|++.|
T Consensus 1 ~~k~vivvr~dL~m--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~~~~~W~~~g~~KiVlk~~~e~el~~l~~~a~~~g 78 (120)
T 1xty_A 1 MIKMVIVVRSDIKM--GKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKVNSLDEIISRAKKAETMN 78 (120)
T ss_dssp CEEEEEEEESSSCC--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CcEEEEEEECCCCc--CHhHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCC
Confidence 58999999999999 99999999999999999887 43 3444455555555999999999999999999999999999
Q ss_pred CCeEEE-----EEeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780 85 IAHKLW-----IEQPENIPTCLATKPYPKSTVSLVFKKLKLC 121 (122)
Q Consensus 85 i~~~l~-----~e~~~gt~TvlaigP~~~~~i~~itg~LkLl 121 (122)
|++++| +|+||||.|||||||+|++.||+||||||||
T Consensus 79 l~~~~i~DAG~Tei~~gs~TvlaigP~~~~~vd~itg~LkL~ 120 (120)
T 1xty_A 79 LPFSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL 120 (120)
T ss_dssp CCEEEEECCSSSSSCTTCEEEEEEEEEEHHHHHHHHTTCEEC
T ss_pred CCEEEEEcCCccccCCCCeEEEEeccCCHHHHHHHhCCCCCC
Confidence 999999 5999999999999999999999999999997
No 3
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=100.00 E-value=4.4e-44 Score=254.67 Aligned_cols=110 Identities=19% Similarity=0.262 Sum_probs=102.3
Q ss_pred ceeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHh-cCC-hhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHC
Q 042780 6 DVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSH-KDD-PHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAG 83 (122)
Q Consensus 6 ~~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~-~~~-~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~ 83 (122)
+++|||||||+||+| |+||++|||||||+++|..+ +++ +.+++|.. .||+||||+++|+++|.+|.++|++.
T Consensus 1 ~e~k~vivvr~dL~m--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~----~g~~kiVlk~~~e~~l~~l~~~a~~~ 74 (117)
T 1rlk_A 1 MVKKMVIAVRKDLDM--GKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYD----EGQRKIVVKVNDLDEIMEIKRMADSM 74 (117)
T ss_dssp -CEEEEEEEESTTCC--CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH----TTCCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCc--CHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH----CCCeEEEEecCCHHHHHHHHHHHHHC
Confidence 479999999999999 99999999999999999876 333 45678887 99999999999999999999999999
Q ss_pred CCCeEEE-----EEeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780 84 GIAHKLW-----IEQPENIPTCLATKPYPKSTVSLVFKKLKLC 121 (122)
Q Consensus 84 gi~~~l~-----~e~~~gt~TvlaigP~~~~~i~~itg~LkLl 121 (122)
||++++| +|+||||.|||||||+|++.||+||||||||
T Consensus 75 gl~~~~v~DAG~Tei~~gt~TvlaigP~~~~~vd~itg~lkL~ 117 (117)
T 1rlk_A 75 GIVNEIVQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKLL 117 (117)
T ss_dssp TCCEEEEECCCSSSSSCCCEEEEEEEEEEHHHHHHHHTTSCBC
T ss_pred CCCEEEEEeCCccCcCCCCEEEEEeCcCCHHHHHHHcCCCCCC
Confidence 9999999 5999999999999999999999999999997
No 4
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7e-44 Score=252.96 Aligned_cols=108 Identities=22% Similarity=0.333 Sum_probs=95.8
Q ss_pred eEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHh-cCC-hhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCC
Q 042780 8 LVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSH-KDD-PHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGI 85 (122)
Q Consensus 8 ~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~-~~~-~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi 85 (122)
+|||||||+||+| |+||++|||||||+++|..+ +++ +.+++|.. .||+||||+++|+++|.+|.++|++.||
T Consensus 1 ~k~vivvr~dL~m--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~----~g~~kivlk~~~e~~l~~l~~~a~~~gl 74 (115)
T 2zv3_A 1 MKMVVVIRNDLGM--GKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLR----EGQKKVVVKVNSEKELIDIYNKARSEGL 74 (115)
T ss_dssp CEEEEEEESSSCC--CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH----TTCCEEEEEESSHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEECCCCc--CHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH----CCCeEEEEecCCHHHHHHHHHHHHHcCC
Confidence 6999999999999 99999999999999999876 334 45678887 9999999999999999999999999999
Q ss_pred CeEEE-----EEeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780 86 AHKLW-----IEQPENIPTCLATKPYPKSTVSLVFKKLKLC 121 (122)
Q Consensus 86 ~~~l~-----~e~~~gt~TvlaigP~~~~~i~~itg~LkLl 121 (122)
++++| +|+||||.|||||||+|++.||+||||||||
T Consensus 75 ~~~~i~DAG~Tei~~gt~TvlaigP~~~~~vd~itg~lkL~ 115 (115)
T 2zv3_A 75 PCSIIRDAGHTQLEPGTLTAVAIGPEKDEKIDKITGHLKLL 115 (115)
T ss_dssp CEEEEEECC-------EEEEEEEEEECHHHHHHHHTTSCBC
T ss_pred CEEEEEeCCceecCCCCEEEEEeCcCCHHHHHHHhCCCCCC
Confidence 99999 5999999999999999999999999999997
No 5
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=100.00 E-value=6.1e-44 Score=255.46 Aligned_cols=110 Identities=27% Similarity=0.330 Sum_probs=102.9
Q ss_pred ceeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHh-cCC-hhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHC
Q 042780 6 DVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSH-KDD-PHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAG 83 (122)
Q Consensus 6 ~~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~-~~~-~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~ 83 (122)
.++|||||||+||+| |+||++|||||||+++|+.+ +++ +.+++|.. .||+||||+++|+++|.+|.++|++.
T Consensus 5 ~~~k~vivvr~dL~m--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~----~g~~Kvvlk~~~e~el~~l~~~a~~~ 78 (121)
T 1wn2_A 5 FKYKQVIVARADLKL--SKGKLAAQVAHGAVTAAFEAYKKKREWFEAWFR----EGQKKVVVKVESEEELFKLKAEAEKL 78 (121)
T ss_dssp CCEEEEEEEESSSCC--CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH----TTCCEEEEEESSHHHHHHHHHHHHHT
T ss_pred ccceEEEEEECCCCc--CHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH----CCCcEEEEecCCHHHHHHHHHHHHHC
Confidence 578999999999999 99999999999999999886 433 45678887 99999999999999999999999999
Q ss_pred CCCeEEE-----EEeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780 84 GIAHKLW-----IEQPENIPTCLATKPYPKSTVSLVFKKLKLC 121 (122)
Q Consensus 84 gi~~~l~-----~e~~~gt~TvlaigP~~~~~i~~itg~LkLl 121 (122)
||++++| +|+||||.|||||||+|++.||+||||||||
T Consensus 79 gl~~~~i~DAG~Tei~~gt~TvlaigP~~~~~vd~itg~LkL~ 121 (121)
T 1wn2_A 79 GLPNALIRDAGLTEIPPGTVTVLAVGPAPEEIVDKVTGNLKLL 121 (121)
T ss_dssp TCCEEEEECTTCTTSCTTCEEEEEEEEEEHHHHHHHHTTSEEC
T ss_pred CCCEEEEEcCCccccCCCCEEEEEeccCCHHHHHHhcCCCCCC
Confidence 9999999 4999999999999999999999999999997
No 6
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=100.00 E-value=1e-43 Score=252.82 Aligned_cols=110 Identities=25% Similarity=0.260 Sum_probs=103.5
Q ss_pred ceeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHh-cCCh-hHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHC
Q 042780 6 DVLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSH-KDDP-HTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAG 83 (122)
Q Consensus 6 ~~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~-~~~~-~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~ 83 (122)
+++|||||||+||+| |+||++|||||||+++|+.+ ++++ .+.+|.. .||+||||+++|+++|.+|.++|++.
T Consensus 1 ~~~K~vivvr~dL~m--~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~----~g~~KVvlk~~~e~~l~~l~~~a~~~ 74 (117)
T 1q7s_A 1 GEYKMILVVRNDLKM--GKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEY----CGQPKVVVKAPDEETLIALLAHAKML 74 (117)
T ss_dssp CCEEEEEEEEGGGCC--CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH----TTCCEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCeEEEEEEECCCCc--CHhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHh----CCCeeEEEEcCCHHHHHHHHHHHHHC
Confidence 479999999999999 99999999999999999988 4444 4688887 99999999999999999999999999
Q ss_pred CCCeEEEE-----EeCCCCceEEEEcCCCCcchhhhhCCCCCC
Q 042780 84 GIAHKLWI-----EQPENIPTCLATKPYPKSTVSLVFKKLKLC 121 (122)
Q Consensus 84 gi~~~l~~-----e~~~gt~TvlaigP~~~~~i~~itg~LkLl 121 (122)
||+|++|+ |+||||.|||||||+|++.||+||||||||
T Consensus 75 gl~~~~i~DAG~Tqi~~gt~TvlaigP~~~~~vd~itg~lkL~ 117 (117)
T 1q7s_A 75 GLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY 117 (117)
T ss_dssp TCCEEEEEECSSSSEEEEEEEEEEEEEEEHHHHHHHHTTSCBC
T ss_pred CCCEEEEEECCCcccCCCCeEEEEeccCCHHHHHHhcCCCCCC
Confidence 99999998 599999999999999999999999999997
No 7
>2gax_A Hypothetical protein ATU0240; MCSG, structural genomics, agrobacterium tumfaciens, hypothe protein, PSI; 1.80A {Agrobacterium tumefaciens str} SCOP: c.131.1.1
Probab=99.89 E-value=2.3e-23 Score=151.12 Aligned_cols=111 Identities=12% Similarity=0.045 Sum_probs=94.6
Q ss_pred eeEEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhcC----ChhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHH
Q 042780 7 VLVQYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKD----DPHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNA 82 (122)
Q Consensus 7 ~~kmvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~~----~~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~ 82 (122)
+.|||||||+||.| |++++||||+++++...+.+ +-.-..+..-|.+.||+++||++++ ++|.+|.++|.+
T Consensus 3 ~~K~viVv~~dL~~----g~~aN~aA~l~~gl~~~~~~~~G~~~~d~~g~~~~~~~~~p~~VL~a~~-~~L~~l~~~a~~ 77 (135)
T 2gax_A 3 DTKIAVILRDDLAV----WQKLNVTAFLMSGIVAQTGEIIGEPYRDGAGNVYNPLSIQPIVVMATDQ-EALRKIHQRSLE 77 (135)
T ss_dssp SEEEEEEEETTSCH----HHHHHHHHHHHHHHHHHCGGGBCSCEECTTSCEECCCBSSCEEEEEECH-HHHHHHHHHHHH
T ss_pred CcEEEEEEcCCChH----HHHHHHHHHHHHHHHHhChhhcCCcccCcccccccccCCCcEEEEEECH-HHHHHHHHHHHH
Confidence 47999999999966 59999999999999987621 1011233333456999999999998 899999999999
Q ss_pred CCCCeEEEE-----------------EeCCCCceEEEEc-CCCCcchhhhhCCCCCCC
Q 042780 83 GGIAHKLWI-----------------EQPENIPTCLATK-PYPKSTVSLVFKKLKLCK 122 (122)
Q Consensus 83 ~gi~~~l~~-----------------e~~~gt~Tvlaig-P~~~~~i~~itg~LkLl~ 122 (122)
.||++.+++ |+++++.|++||| |+|++.||++||+|+|..
T Consensus 78 ~~l~~~~f~d~~~~~~~~~~~~~~~~~~~~~~l~~~GI~l~Gp~k~VdklTg~L~L~~ 135 (135)
T 2gax_A 78 RDITTSLYIEEMFATGHDAANRQVFSHFSPDTAKVVGMALRADRKIVDKITKGAKLHA 135 (135)
T ss_dssp TTCCCEEEEGGGGGCCCHHHHHHHHTTCCTTTCCEEEEEEEEEHHHHHHHTTTCEECC
T ss_pred CCCcEEeccHHhhhCCCHHHHHHHHhcCCcccceEEEEEEECCHHHHHHHhCCCCCCC
Confidence 999999997 6899999999999 899999999999999963
No 8
>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}
Probab=67.73 E-value=19 Score=22.27 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=34.8
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEE-EeCCCCceEEEEcC
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWI-EQPENIPTCLATKP 105 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~-e~~~gt~TvlaigP 105 (122)
.|..-+.+.|+|.+++.++.+.++++|+....-. +.+.|...+...-|
T Consensus 70 ~g~~hi~~~v~d~~~v~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP 118 (127)
T 3e5d_A 70 LGWAHIAISTGTKEAVDELTEKLRQDGFAIAGEPRMTGDGYYESVVLDP 118 (127)
T ss_dssp SSCCCEEEECSSHHHHHHHHHHHHHTTCCEEEEEEECTTSCEEEEEECT
T ss_pred CceEEEEEEcCCHHHHHHHHHHHHHcCCeEecCcccCCCCcEEEEEECC
Confidence 3456799999999999999999999999865422 34455444544444
No 9
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A*
Probab=64.50 E-value=14 Score=29.27 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=32.4
Q ss_pred CCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 55 QNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 55 ~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
+...|....++...|+++|.++.+.|++.++|..++
T Consensus 9 ~~igg~a~~~v~p~s~eel~~~l~~a~~~~~pv~vl 44 (340)
T 1uxy_A 9 FGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLIL 44 (340)
T ss_dssp TCCCCBEEEEEEESSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCccccEEEEeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 456899999999999999999999999999998754
No 10
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=62.52 E-value=10 Score=23.46 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEcCCC-CcchhhhhCC
Q 042780 68 KGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYP-KSTVSLVFKK 117 (122)
Q Consensus 68 ~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~TvlaigP~~-~~~i~~itg~ 117 (122)
.+++.-..+.+++...|++..+. +.++..=+-+||.. +++.+.....
T Consensus 18 ~~~~~A~~l~~~L~~~G~~a~i~---~~~~~yRV~vGpf~s~~~A~~~~~~ 65 (81)
T 1uta_A 18 RGAEQAETVRAQLAFEGFDSKIT---TNNGWNRVVIGPVKGKENADSTLNR 65 (81)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEE---ECSSSEEEEESSCBTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCeEEE---eCCcEEEEEECCcCCHHHHHHHHHH
Confidence 56778888999999999998765 46888999999984 4555554433
No 11
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=59.68 E-value=3 Score=22.84 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHCCCCeEEE
Q 042780 68 KGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 68 ~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
...++|.+|.++|+..+|....|
T Consensus 12 gtpeelkklkeeakkanirvtfw 34 (36)
T 2ki0_A 12 GTPEELKKLKEEAKKANIRVTFW 34 (36)
T ss_dssp CCHHHHHHHHHHHHHHCCCCCBC
T ss_pred CCHHHHHHHHHHHHhccEEEEee
Confidence 34689999999999999876544
No 12
>3r4q_A Lactoylglutathione lyase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.51A {Agrobacterium tumefaciens}
Probab=59.53 E-value=28 Score=23.24 Aligned_cols=30 Identities=7% Similarity=0.096 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 59 SMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 59 g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
|..-+.+.|++.+++.++.+.++++|+...
T Consensus 76 g~~hi~f~V~~~~dld~~~~~l~~~G~~~~ 105 (160)
T 3r4q_A 76 GQGHFCFYADDKAEVDEWKTRFEALEIPVE 105 (160)
T ss_dssp EECEEEEEESSHHHHHHHHHHHHTTTCCCC
T ss_pred ceeEEEEEeCCHHHHHHHHHHHHHCCCEEe
Confidence 346699999999999999999999998764
No 13
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes}
Probab=56.32 E-value=20 Score=28.27 Aligned_cols=44 Identities=9% Similarity=0.024 Sum_probs=36.6
Q ss_pred hhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 46 PHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 46 ~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
..+..|-. +...+....++...|++++.++.+.|.+.++|..+.
T Consensus 41 ~~l~~~tt-~~igg~p~~vv~P~s~eev~~~v~~a~~~~~pv~v~ 84 (322)
T 3tx1_A 41 EPLSKYTY-TKTGGAADVFVMPKTIEEAQEVVAYCHQNKIPLTIL 84 (322)
T ss_dssp EEGGGGST-TSCCCEEEEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred cchHHhcc-CCcCceeeEEEEeCCHHHHHHHHHHHHHcCCcEEEE
Confidence 33555554 567899999999999999999999999999998654
No 14
>2rbb_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-2, PROT structure initiative; 1.82A {Burkholderia phytofirmans}
Probab=54.04 E-value=40 Score=21.55 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=30.8
Q ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCeEEE-EEeCCCCceEEEEcC
Q 042780 62 KVTLEVKGETQIVNLSEKLNAGGIAHKLW-IEQPENIPTCLATKP 105 (122)
Q Consensus 62 KVvLkv~~e~eL~~l~~~a~~~gi~~~l~-~e~~~gt~TvlaigP 105 (122)
-+.+.|+|.+++.++.+.++++|+....- .+.+.|...+...-|
T Consensus 78 ~~~f~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP 122 (141)
T 2rbb_A 78 LLNFDVDTKEAVDKLVPVAIAAGATLIKAPYETYYHWYQAVLLDP 122 (141)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEEEEECTTSEEEEEEECT
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCeEecCccccCCccEEEEEECC
Confidence 68999999999999999999999864321 133334444444444
No 15
>1twu_A Hypothetical protein YYCE; structural genomics, protein structure initiative, MCSG, DUP of the alpha-beta sandwichs. bacillus subtilis, PSI; 2.00A {Bacillus subtilis} SCOP: d.32.1.8
Probab=53.49 E-value=25 Score=22.57 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 59 SMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 59 g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
|..-+.+.|+|.+++.++.+.++++|+...
T Consensus 77 ~~~hi~~~v~d~~~l~~~~~~l~~~G~~~~ 106 (139)
T 1twu_A 77 PDSLLVFYVPNAVELAAITSKLKHMGYQEV 106 (139)
T ss_dssp TTCEEEEECCCHHHHHHHHHHHHHTTCCEE
T ss_pred CccEEEEEeCCcchHHHHHHHHHHcCCcCc
Confidence 445799999999999999999999998753
No 16
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=52.10 E-value=22 Score=27.80 Aligned_cols=43 Identities=5% Similarity=0.012 Sum_probs=35.5
Q ss_pred hHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 47 HTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 47 ~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
.+..|-. +...+....++...|++++.++.+.|.+.+++..+.
T Consensus 36 ~l~~~~t-~~~~~~p~~vv~P~s~eev~~~l~~a~~~~~pv~~~ 78 (326)
T 1hsk_A 36 PLKRYTY-TKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYL 78 (326)
T ss_dssp EGGGTCT-TSCCCEEEEEECCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred chHHhcc-CCcCCcceEEEEcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4455654 456788999999999999999999999999998653
No 17
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=51.14 E-value=50 Score=23.15 Aligned_cols=46 Identities=26% Similarity=0.199 Sum_probs=33.2
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHC----CCCeEEEEEe-CCCCceEEEEcC
Q 042780 60 MHKVTLEVKGETQIVNLSEKLNAG----GIAHKLWIEQ-PENIPTCLATKP 105 (122)
Q Consensus 60 ~~KVvLkv~~e~eL~~l~~~a~~~----gi~~~l~~e~-~~gt~TvlaigP 105 (122)
..+|++.+.|++++..|-+.+=.. =|||.+.-+- +++++.+|+.++
T Consensus 39 G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~~~~~PV~L~~~~ 89 (150)
T 3sxu_A 39 GKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQ 89 (150)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSSTTCCSEEEECTT
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCCCCCCCEEEeCCC
Confidence 356888999999999988886433 2888876643 356777777654
No 18
>2a4x_A Mitomycin-binding protein; ALFA/beta protein, mitomycin C-binding protein, bleomycin A2, antimicrobial protein; HET: BLM; 1.40A {Streptomyces caespitosus} SCOP: d.32.1.2 PDB: 2a4w_A* 1kmz_A 1kll_A*
Probab=49.05 E-value=49 Score=21.04 Aligned_cols=48 Identities=10% Similarity=0.096 Sum_probs=33.4
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE-EEeCCCCceEEEEcC
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW-IEQPENIPTCLATKP 105 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~-~e~~~gt~TvlaigP 105 (122)
.+..-+.+.|+|.+++.++.+.++++|+....- .+.+.|...+...-|
T Consensus 70 ~~~~~l~f~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP 118 (138)
T 2a4x_A 70 GHRFAIAFEFPDTASVDKKYAELVDAGYEGHLKPWNAVWGQRYAIVKDP 118 (138)
T ss_dssp SCSEEEEEECSSHHHHHHHHHHHHHTTCCEEEEEEEETTTEEEEEEECT
T ss_pred CCeEEEEEEeCCHHHHHHHHHHHHHCCCceeeCCcccCCCcEEEEEECC
Confidence 456679999999999999999999999875421 234444333333333
No 19
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}
Probab=46.77 E-value=9.5 Score=30.71 Aligned_cols=44 Identities=7% Similarity=0.055 Sum_probs=37.0
Q ss_pred hhHhhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 46 PHTLQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 46 ~~~~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
..+.+|-. +...|....++...|+++|.++.+.|++.++|..+.
T Consensus 17 ~~L~~~tt-~~igg~a~~vv~p~s~eel~~~v~~a~~~~ipv~vl 60 (357)
T 3i99_A 17 ANLKPYHT-FGIEQLAAQLVVAESIDDLKALYCSAEWASLPKLII 60 (357)
T ss_dssp EESGGGST-TCCSCEEEEEEEECSHHHHHHHHSSSTTTTSCEEEE
T ss_pred Ccchhhcc-CCCCccceEEEEECCHHHHHHHHHHHHHcCCCEEEE
Confidence 34555554 667899999999999999999999999999998754
No 20
>2kjz_A ATC0852; protein of unknown function, dimer, structural genomics, PSI protein structure initiative; NMR {Agrobacterium tumefaciens}
Probab=46.42 E-value=30 Score=22.75 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
.+..-+.+.|+|.+++.++.+.++++|+..
T Consensus 85 ~~~~hl~f~v~d~~dv~~~~~~l~~~G~~~ 114 (144)
T 2kjz_A 85 GGGGELAFRVENDAQVDETFAGWKASGVAM 114 (144)
T ss_dssp SSSCEEEEECSSHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHCCCeE
Confidence 456679999999999999999999999764
No 21
>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural GEN midwest center for structural genomics, MCSG; HET: P6G; 1.80A {Bacillus cereus atcc 14579} SCOP: d.32.1.2
Probab=46.16 E-value=30 Score=21.06 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
.+..-+.+.|+|.+++..+.+.+++.|+..
T Consensus 59 ~~~~~~~~~v~~~~d~~~~~~~l~~~G~~~ 88 (113)
T 1xqa_A 59 PKTFHVGFPQESEEQVDKINQRLKEDGFLV 88 (113)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHTTCCC
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCEE
Confidence 456679999999999999999999999874
No 22
>2rk0_A Glyoxalase/bleomycin resistance protein/dioxygena; 11002Z, glyoxylase, dioxygenas PSI-II; 2.04A {Frankia SP}
Probab=46.09 E-value=29 Score=22.08 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
.|..-+.+.|+|.+++.++.+.++++|+...
T Consensus 71 ~g~~h~~f~v~~~~d~~~~~~~l~~~G~~~~ 101 (136)
T 2rk0_A 71 PGLDHLSFSVESMTDLDVLEERLAKAGAAFT 101 (136)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHHHHTCCBC
T ss_pred CCcceEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 4556789999998999999999999998753
No 23
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=44.80 E-value=46 Score=27.28 Aligned_cols=47 Identities=6% Similarity=-0.008 Sum_probs=37.2
Q ss_pred CChhHhhcccCCC--CCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 44 DDPHTLQYCSPQN--INSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 44 ~~~~~~~w~~~~~--~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
.++.+.+....|+ ..+....|+...|++++.++.+.|++.|++..+.
T Consensus 18 ~~~~y~~~~~~~n~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ 66 (473)
T 3rja_A 18 GTADYERDVEPFNIRLPYIPTAIAQTQTTAHIQSAVQCAKKLNLKVSAK 66 (473)
T ss_dssp TSHHHHHHTCCSBTTSCCCCSEEEECCSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCchHHHHHHhhcccCCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEE
Confidence 4555544444444 4788999999999999999999999999998755
No 24
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=43.13 E-value=11 Score=22.93 Aligned_cols=48 Identities=8% Similarity=0.075 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEcCCCC-cchhhhhCC
Q 042780 67 VKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPK-STVSLVFKK 117 (122)
Q Consensus 67 v~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~TvlaigP~~~-~~i~~itg~ 117 (122)
..+++.-..+.+++...|++..+. +.++..-+-+||... ++.+.....
T Consensus 17 f~~~~~A~~~~~~L~~~g~~~~i~---~~~~~yRV~vGpf~~~~~A~~~~~~ 65 (79)
T 1x60_A 17 FKVKANADSLASNAEAKGFDSIVL---LKDGLYKVQIGAFSSKDNADTLAAR 65 (79)
T ss_dssp ESCHHHHHHHHHHHHHHTCCEEEE---EETTEEEEEEEEESSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCeEEe---cCCcEEEEEECCcCCHHHHHHHHHH
Confidence 367888888999999889988764 356788888999764 455554433
No 25
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=40.51 E-value=79 Score=20.99 Aligned_cols=86 Identities=7% Similarity=-0.028 Sum_probs=47.0
Q ss_pred EEEEEeCCCCCCCCcchHHHhHHHHHHHHHHHhcCCh--hHhhcccCCCCCCCeEE--EEEcCCHHHHHHHHHHHHHCCC
Q 042780 10 QYVVLRRDLIDAWPLGSVVTQGCHASVSAIWSHKDDP--HTLQYCSPQNINSMHKV--TLEVKGETQIVNLSEKLNAGGI 85 (122)
Q Consensus 10 mvivVR~DL~m~w~~GkiaAQ~~HAa~~~~~~~~~~~--~~~~w~~~~~~~g~~KV--vLkv~~e~eL~~l~~~a~~~gi 85 (122)
|-+.||.|... |.+-=..+..- +.+-.+.+... .--.|...|...|+... +..|+|.++|.++.. ++
T Consensus 1 MlFlV~m~V~~--P~~~~~~~~~~--~~a~Eka~a~eLq~~G~~~~lWRv~G~y~nisIfdv~s~~eLh~iL~-----~L 71 (96)
T 1mli_A 1 MLFHVKMTVKL--PVDMDPAKATQ--LKADEKELAQRLQREGTWRHLWRIAGHYANYSVFDVPSVEALHDTLM-----QL 71 (96)
T ss_pred CeEEEEEEeeC--CCCCCHHHHHH--HHHHHHHHHHHHHhCCeeEEEEEecCCccEEEEEEcCCHHHHHHHHH-----hC
Confidence 55778888876 66544443322 11111111111 11246666666887553 678999998876654 56
Q ss_pred CeEEEEEeCCCCceEEEEcCCCCc
Q 042780 86 AHKLWIEQPENIPTCLATKPYPKS 109 (122)
Q Consensus 86 ~~~l~~e~~~gt~TvlaigP~~~~ 109 (122)
|-+-|.++ +|-++.+-|++
T Consensus 72 PLfpym~i-----~VtpL~~HPs~ 90 (96)
T 1mli_A 72 PLFPYMDI-----EVDGLCRHPSS 90 (96)
T ss_pred CCCceEEE-----EEEEcccCCCC
Confidence 66656544 44455555543
No 26
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=38.25 E-value=54 Score=24.66 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=32.1
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCC
Q 042780 61 HKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENI 97 (122)
Q Consensus 61 ~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt 97 (122)
..++.-|.|.+++..|.+.|...|.+..++.++..|.
T Consensus 135 ~~l~~~Vds~~~l~~L~~~a~~~~~~~~V~lkVdtGm 171 (282)
T 3cpg_A 135 VDTIESVDSIDLAEKISRRAVARGITVGVLLEVNESG 171 (282)
T ss_dssp CSEEEEECCHHHHHHHHHHHHHHTCCEEEEEEBCCSS
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCCCceEEEEEECCC
Confidence 4478889999999999999998898888899988774
No 27
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=37.67 E-value=68 Score=21.28 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIE 92 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e 92 (122)
.+.-|.+++.+|.-+..-+...+++.||++++--|
T Consensus 20 ~~~M~eL~ra~d~v~a~~~k~LLe~aGI~~fv~De 54 (97)
T 2hfv_A 20 QGHLRELLRTNDAVLLSAVGALLDGADIGHLVLDQ 54 (97)
T ss_dssp CCSEEEEEEECCHHHHHHHHHHHHHTTCCEECCSC
T ss_pred cccceeeeecCCHHHHHHHHHHHHhCCCCEEEcCC
Confidence 34558899999999999999999999999987655
No 28
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=37.07 E-value=80 Score=20.60 Aligned_cols=57 Identities=7% Similarity=0.081 Sum_probs=46.4
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEcCCCCcchhhhhC
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPYPKSTVSLVFK 116 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~TvlaigP~~~~~i~~itg 116 (122)
.++.+|+--.=+..++.++.....++|+.-.++.+ +.-++-+-.+|.+..++|++|.
T Consensus 17 ~k~n~V~TGgfg~~~v~ev~~am~~~g~~gkii~~--~dGl~y~~T~~~s~~eLdk~t~ 73 (85)
T 2l48_A 17 TKQNIIQSGAFSPYETPDVMGALTSLKMTADFILQ--SDGLTYFISKPTSDAQLKAMKE 73 (85)
T ss_dssp CCCCCEEECCBCTTTHHHHHHHHHHTTCCEEEEEC--TTSCEEEEECCCCHHHHHHHHH
T ss_pred CCceEEEecccCHHHHHHHHHHHHHcCceEEEEEC--CCceEEEEeCCCCHHHHHHHHH
Confidence 46666777666778899999999999999988874 4456777899999999999874
No 29
>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resis protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125}
Probab=36.28 E-value=44 Score=21.89 Aligned_cols=30 Identities=13% Similarity=0.317 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
.|..-+.+.|+|.+++.++.+.++++|+..
T Consensus 85 ~g~~hi~f~v~~~~dv~~~~~~l~~~G~~~ 114 (146)
T 3ct8_A 85 TGLNHLAFHAASREKVDELTQKLKERGDPI 114 (146)
T ss_dssp SSCCEEEEECSCHHHHHHHHHHHHHHTCCB
T ss_pred CCceEEEEECCCHHHHHHHHHHHHHcCCcc
Confidence 355679999999999999999999999875
No 30
>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}
Probab=34.16 E-value=99 Score=20.27 Aligned_cols=31 Identities=6% Similarity=0.142 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
.+..-+.+.|+|.+++.++.+.++++|+...
T Consensus 66 ~~~~~l~f~v~d~~dvd~~~~~l~~~G~~i~ 96 (148)
T 3rhe_A 66 GGGMELSFQVNSNEMVDEIHRQWSDKEISII 96 (148)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEEEcCCHHHHHHHHHHHHhCCCEEE
Confidence 3456799999999999999999999998763
No 31
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=32.99 E-value=11 Score=26.47 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHCCCCeEEEE---EeCCCCceEEEEcCCC
Q 042780 71 TQIVNLSEKLNAGGIAHKLWI---EQPENIPTCLATKPYP 107 (122)
Q Consensus 71 ~eL~~l~~~a~~~gi~~~l~~---e~~~gt~TvlaigP~~ 107 (122)
+.|-.-...|...++|+.+++ |+..||+||=-.+-.+
T Consensus 47 e~Lg~kIR~a~~~kvPy~lVVG~kE~e~~sVsVR~r~~~~ 86 (130)
T 1v95_A 47 VSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTP 86 (130)
T ss_dssp SCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEEEECSSSC
T ss_pred CcHHHHHHHHHHcCCCEEEEEechHHhcCeeEEEecCCCC
Confidence 679999999999999999999 8889999998665433
No 32
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A
Probab=32.74 E-value=67 Score=26.46 Aligned_cols=42 Identities=10% Similarity=0.005 Sum_probs=34.5
Q ss_pred hhcccCCCCCCCeEEEEEcCCHHHHHHHHHHHHHC--CCCeEEE
Q 042780 49 LQYCSPQNINSMHKVTLEVKGETQIVNLSEKLNAG--GIAHKLW 90 (122)
Q Consensus 49 ~~w~~~~~~~g~~KVvLkv~~e~eL~~l~~~a~~~--gi~~~l~ 90 (122)
..|.+|....+....++...|++++.++.+.|.+. +++..+.
T Consensus 31 ~~~~~W~~~~~~p~~vv~P~s~eev~~~v~~a~~~~~~~~v~~~ 74 (481)
T 4feh_A 31 TRLTGWGRTAPSVANVLRTPDAEMIVKAVARVAESGGGRGAIAR 74 (481)
T ss_dssp EEECCTTCCSCEEEEEEECSCHHHHHHHHHHHHTTTCTTCEEEE
T ss_pred ceeecccCCCCCCCEEEeCCCHHHHHHHHHHHHHcCCCceEEEE
Confidence 45665435688999999999999999999999998 6887654
No 33
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A*
Probab=31.10 E-value=98 Score=25.71 Aligned_cols=47 Identities=11% Similarity=-0.011 Sum_probs=35.9
Q ss_pred CChhHhhcccCCC--CCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 44 DDPHTLQYCSPQN--INSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 44 ~~~~~~~w~~~~~--~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
.++.+.+....|+ ..+....|+...+++++.++.+.|++.|++..+.
T Consensus 40 ~~~~Y~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~v~v~ 88 (530)
T 2y3s_A 40 GDIRYEDLRRGENLRFVGDPEEIHLVGSAAEIEQVLSRAVRSGKRVAVR 88 (530)
T ss_dssp TSTTHHHHTCCSCTTCCCCCSEEEECCSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCccHHHHHhHhhhhccCCCCEEEecCCHHHHHHHHHHHHHcCCcEEEE
Confidence 3455544333333 3678899999999999999999999999998754
No 34
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Probab=30.56 E-value=1e+02 Score=25.50 Aligned_cols=47 Identities=13% Similarity=0.100 Sum_probs=36.0
Q ss_pred CChhHhhcccCCC--CCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 44 DDPHTLQYCSPQN--INSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 44 ~~~~~~~w~~~~~--~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
.++.+.+....|+ ..+....|+...+++++.++.+.|++.|++..+.
T Consensus 16 ~~~~y~~~~~~~n~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vr 64 (501)
T 3pop_A 16 EDPRYIELSHSDNHRFVVEPEEFFLPATPDDVVASLQKAVTEGRGVACR 64 (501)
T ss_dssp TSTTHHHHTCCSCTTSCCCCSEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcchHHHHHHHhhccCCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEE
Confidence 3444444333343 3678899999999999999999999999998654
No 35
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=30.44 E-value=95 Score=19.90 Aligned_cols=42 Identities=14% Similarity=0.064 Sum_probs=33.4
Q ss_pred hhHhhcccCCCCCCCeEEEEEcCC--HHHHHHHHHHHHHCCCCeEEEE
Q 042780 46 PHTLQYCSPQNINSMHKVTLEVKG--ETQIVNLSEKLNAGGIAHKLWI 91 (122)
Q Consensus 46 ~~~~~w~~~~~~~g~~KVvLkv~~--e~eL~~l~~~a~~~gi~~~l~~ 91 (122)
..+.++.. .|..|.|+-++| +....++...++..++|++.+-
T Consensus 25 ~~v~kai~----~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~ 68 (101)
T 3v7q_A 25 DLVIKEIR----NARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVE 68 (101)
T ss_dssp HHHHHHHH----TTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEES
T ss_pred hhhHHHHh----cCceeEEEEeccccccchhhhcccccccCCCeeeec
Confidence 44667776 899999999886 4667788888999999998764
No 36
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=30.20 E-value=78 Score=24.67 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=35.8
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEEcCC
Q 042780 61 HKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLATKPY 106 (122)
Q Consensus 61 ~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~TvlaigP~ 106 (122)
..+.+-++|.+++..|.+.+.+.|.+..++.++..|.. =+|+-|.
T Consensus 107 ~~l~~~Vds~~~l~~l~~~a~~~~~~~~V~l~vdtG~~-R~G~~~~ 151 (376)
T 3llx_A 107 INLHILLDNITQAQAVVDYAAEFGQDFSVFIEIDSDDH-RGGIKPS 151 (376)
T ss_dssp CEEEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCSSSS-SSCBCTT
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCceEEEEEECCCCC-CCCCCCc
Confidence 35788899999999999999999999999999887752 2455443
No 37
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=29.38 E-value=1.2e+02 Score=24.37 Aligned_cols=37 Identities=11% Similarity=-0.016 Sum_probs=32.8
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCC
Q 042780 61 HKVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENI 97 (122)
Q Consensus 61 ~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt 97 (122)
..+++-++|.+++..|.+.+.+.|.+..++.|+..|.
T Consensus 141 ~~l~~~Vds~~~l~~L~~~a~~~~~~~~V~l~VdtG~ 177 (426)
T 3gwq_A 141 FEFFCLVDSVEGVEQLGEFFKSVNKQLQVLLELGVPG 177 (426)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEECCTT
T ss_pred ccEEEEeCCHHHHHHHHHHHHHCCCeeEEEEEeCCCC
Confidence 4578889999999999999999999999999988773
No 38
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=28.98 E-value=74 Score=17.68 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCC
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIA 86 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~ 86 (122)
.....|-++++ ++|...|.+.|+..|+.
T Consensus 13 ~r~~~i~vRlt-~eE~~~l~~~A~~~g~s 40 (51)
T 2ba3_A 13 QKTVVRTLRFS-PVEDETIRKKAEDSGLT 40 (51)
T ss_dssp CCSEEEEEEEC-HHHHHHHHHHHHHHTCC
T ss_pred cCceeEEEEEC-HHHHHHHHHHHHHhCCC
Confidence 34556788887 56899999999999875
No 39
>3bqx_A Glyoxalase-related enzyme; VOC superfamily, PSI-2, STRU genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.40A {Fulvimarina pelagi}
Probab=28.91 E-value=1.2e+02 Score=19.53 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
.+..-+.+.|++.+++.++.+.++++|+..
T Consensus 68 ~~~~~l~f~v~~~~dv~~~~~~l~~~G~~~ 97 (150)
T 3bqx_A 68 PGSMALAHNVRAETEVAPLMERLVAAGGQL 97 (150)
T ss_dssp CCSCEEEEECSSGGGHHHHHHHHHHTTCEE
T ss_pred CCeEEEEEEeCCHHHHHHHHHHHHHCCCEE
Confidence 455679999988899999999999999864
No 40
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.49 E-value=81 Score=20.11 Aligned_cols=41 Identities=10% Similarity=0.042 Sum_probs=31.8
Q ss_pred hhHhhcccCCCCCCCeEEEEEcCC--HHHHHHHHHHHHHCCCCeEEE
Q 042780 46 PHTLQYCSPQNINSMHKVTLEVKG--ETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 46 ~~~~~w~~~~~~~g~~KVvLkv~~--e~eL~~l~~~a~~~gi~~~l~ 90 (122)
..+.+++. .|+.|.|+-++| ++-...+...++..++|++.+
T Consensus 21 ~~v~kai~----~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~ 63 (99)
T 3j21_Z 21 NETIRLAK----TGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEF 63 (99)
T ss_dssp HHHHHHHH----HTCCSEEEEECCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHH----cCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 34566666 788899988876 556677788899999998877
No 41
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=28.46 E-value=1e+02 Score=19.15 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHCCCCe
Q 042780 59 SMHKVTLEVKGETQIVNLSEKLNAGGIAH 87 (122)
Q Consensus 59 g~~KVvLkv~~e~eL~~l~~~a~~~gi~~ 87 (122)
+..-+.+.+.+.+++..+.+.++++|+..
T Consensus 67 ~~~h~~~~~~~~~d~~~~~~~l~~~G~~~ 95 (135)
T 3rri_A 67 YPRHFGITFRDKKHFDNLYKLAKQRGIPF 95 (135)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEEcChHhHHHHHHHHHHcCCce
Confidence 45668888998789999999999999976
No 42
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=27.67 E-value=1.1e+02 Score=19.47 Aligned_cols=30 Identities=10% Similarity=-0.014 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
.+-.+|+-|..|+ -=+++.+.|+++|||..
T Consensus 15 ~~aP~VvAKG~~~-~A~~I~~~A~e~~VPi~ 44 (83)
T 3bzy_B 15 TPLPLVIETGKDA-KALQIIKLAELYDIPVI 44 (83)
T ss_dssp CSSCEEEEEEETH-HHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEeCcH-HHHHHHHHHHHcCCCEE
Confidence 5789999999997 45689999999999974
No 43
>3lm4_A Catechol 2,3-dioxygenase; NYSGXRC, PSI-II, protein structure initiative, 2hydroxyl 6 OXO 6 phenyl hexa 2-4 dienoic acid, peroxide; HET: HPX; 1.80A {Rhodococcus jostii}
Probab=27.49 E-value=1.4e+02 Score=22.54 Aligned_cols=31 Identities=10% Similarity=0.231 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
.|..-+.++|+|.++|.++.+.+++.|+...
T Consensus 66 ~g~~~~af~v~~~~dld~~~~~l~~~G~~~~ 96 (339)
T 3lm4_A 66 AGMGHAAMRTSSPEALERRAKSLTDGNVDGT 96 (339)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHHHTTCCEE
T ss_pred CCcceEEEEeCCHHHHHHHHHHHHHCCCcee
Confidence 4566789999999999999999999998764
No 44
>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT structure initiative; HET: MSE; 1.40A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=26.99 E-value=66 Score=20.83 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.4
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHCCC
Q 042780 61 HKVTLEVKGETQIVNLSEKLNAGGI 85 (122)
Q Consensus 61 ~KVvLkv~~e~eL~~l~~~a~~~gi 85 (122)
--+.+.|+|++++..+.+++. .|-
T Consensus 80 ~~l~~~v~d~~evd~~~~~l~-~Gg 103 (136)
T 1u7i_A 80 FSFFVDCESNAQIERLAEALS-DGG 103 (136)
T ss_dssp EEEEEECCCHHHHHHHHHHHH-TTS
T ss_pred eEEEEEcCCHHHHHHHHHHHH-cCC
Confidence 368899999999999999999 775
No 45
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=26.84 E-value=49 Score=27.21 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=35.1
Q ss_pred hHhhcccCC--CCCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 47 HTLQYCSPQ--NINSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 47 ~~~~w~~~~--~~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
.+..|...| ...+....|+...|++++.++.+.|.+.++|....
T Consensus 36 ~~~~~~~d~~~~~~~~p~~vv~P~s~eeV~~~v~~a~~~~~pv~~~ 81 (476)
T 3pm9_A 36 ELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQ 81 (476)
T ss_dssp HHHHHHBCTTCCCBCCCSCEECCCSHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHhcccccccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEE
Confidence 445554334 34788999999999999999999999999998654
No 46
>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET: GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*
Probab=26.54 E-value=1.2e+02 Score=18.92 Aligned_cols=39 Identities=5% Similarity=-0.061 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHH---CCCCeEE-EEEeCCC
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNA---GGIAHKL-WIEQPEN 96 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~---~gi~~~l-~~e~~~g 96 (122)
.|..-+.+.++|.+++.++.+.+++ +|+.... ..+.+.|
T Consensus 71 ~~~~~~~~~v~~~~dv~~~~~~l~~~~~~G~~~~~~p~~~~~g 113 (132)
T 3sk2_A 71 PRFSEIGIMLPTGEDVDKLFNEWTKQKSHQIIVIKEPYTDVFG 113 (132)
T ss_dssp CCCEEEEEEESSHHHHHHHHHHHHHCSSSCCEEEEEEEEETTE
T ss_pred CCcceEEEEeCCHHHHHHHHHHHHhhhcCCCEEeeCCcccCce
Confidence 3455699999999999999999999 9987542 2244445
No 47
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=25.96 E-value=22 Score=26.92 Aligned_cols=22 Identities=5% Similarity=-0.044 Sum_probs=17.8
Q ss_pred EEeCCCCceEEEEcCCCCcchh
Q 042780 91 IEQPENIPTCLATKPYPKSTVS 112 (122)
Q Consensus 91 ~e~~~gt~TvlaigP~~~~~i~ 112 (122)
.+.+++.++++|+||+..+.+.
T Consensus 16 ~~~~~~~l~lVG~GpGd~~~LT 37 (285)
T 1cbf_A 16 PRGSHMKLYIIGAGPGDPDLIT 37 (285)
T ss_dssp CCSTTSEEEEEECBSSCGGGSC
T ss_pred cCCCCCEEEEEecCCCCHHHHH
Confidence 3677889999999999877653
No 48
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=25.40 E-value=29 Score=26.55 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=17.1
Q ss_pred EeCCCCceEEEEcCCCCcchh
Q 042780 92 EQPENIPTCLATKPYPKSTVS 112 (122)
Q Consensus 92 e~~~gt~TvlaigP~~~~~i~ 112 (122)
+..+|.++++|+||+..+.+.
T Consensus 21 ~~~~g~l~lVG~GpGdp~lLT 41 (294)
T 2ybo_A 21 DFPAGSVALVGAGPGDPGLLT 41 (294)
T ss_dssp CCCTTCEEEEEEESSCGGGSC
T ss_pred CCCCCEEEEEecCCCCHHHHH
Confidence 456799999999999877653
No 49
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=25.14 E-value=70 Score=20.81 Aligned_cols=57 Identities=5% Similarity=-0.036 Sum_probs=37.6
Q ss_pred CeEEEEEcC----CHHHHHHHHHHHHHCCCCeEEEE----EeCC--CCceEEEEcCCCCcchhhhhC
Q 042780 60 MHKVTLEVK----GETQIVNLSEKLNAGGIAHKLWI----EQPE--NIPTCLATKPYPKSTVSLVFK 116 (122)
Q Consensus 60 ~~KVvLkv~----~e~eL~~l~~~a~~~gi~~~l~~----e~~~--gt~TvlaigP~~~~~i~~itg 116 (122)
++||.|=|. +--=..++.+.++++|++..+.. |+++ +..-++-+||--+...+++-.
T Consensus 3 mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~~~~Dvil~~pqv~~~~~~~~~ 69 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQR 69 (106)
T ss_dssp CEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHHHCSEEEECTTSGGGHHHHHH
T ss_pred CcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhccCCCEEEEccchhhhHHHHHH
Confidence 567777654 22455688899999999977554 3322 223588899988776655443
No 50
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=24.77 E-value=1.2e+02 Score=24.42 Aligned_cols=34 Identities=3% Similarity=-0.050 Sum_probs=30.5
Q ss_pred CCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 57 INSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 57 ~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
..+....|+...|++++.++.+.|++.+++..+.
T Consensus 35 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ 68 (459)
T 2bvf_A 35 HLQRPSLIARCLSAGDVAKSVRYACDNGLEISVR 68 (459)
T ss_dssp CCCCCSEEEECCSHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccCCCCEEEecCCHHHHHHHHHHHHHcCCcEEEE
Confidence 4688899999999999999999999999988754
No 51
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=24.68 E-value=81 Score=19.98 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.3
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHCC
Q 042780 61 HKVTLEVKGETQIVNLSEKLNAGG 84 (122)
Q Consensus 61 ~KVvLkv~~e~eL~~l~~~a~~~g 84 (122)
-.|.+.+.|.+++.++++++.+..
T Consensus 57 vtv~i~a~s~eq~~~iY~~L~~~~ 80 (86)
T 2h9z_A 57 FNVSMEVSNESERNEIFQKISQLD 80 (86)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSS
T ss_pred EEEEEEECCHHHHHHHHHHHhcCC
Confidence 358889999999999999997543
No 52
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=24.00 E-value=1.3e+02 Score=20.17 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=26.6
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEE
Q 042780 60 MHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIE 92 (122)
Q Consensus 60 ~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e 92 (122)
|+||.-=+.. +.|.++.+.+.+.|++...+.+
T Consensus 1 MK~I~AIIrp-~kl~~Vk~AL~~~G~~g~Tv~~ 32 (118)
T 3t9z_A 1 MKMVVAVIRP-EKLECVKKALEERGFVGMTVTE 32 (118)
T ss_dssp CEEEEEEECG-GGHHHHHHHHHHTTCCCEEEEE
T ss_pred CeEEEEEECH-HHHHHHHHHHHHCCCceEEEEe
Confidence 6778777774 5899999999999999887763
No 53
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*
Probab=23.91 E-value=1.2e+02 Score=25.15 Aligned_cols=33 Identities=15% Similarity=0.053 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 58 NSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 58 ~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
.+....|+...|++++.++.+.|++.+++..+.
T Consensus 55 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ 87 (523)
T 2wdx_A 55 NGEPDYIHLVGSTQQVADAVEETVRTGKRVAVR 87 (523)
T ss_dssp CCCCSEEEECSSHHHHHHHHHHHHHHTCCEEEE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEE
Confidence 678899999999999999999999999988755
No 54
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=23.59 E-value=1.3e+02 Score=22.72 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=28.4
Q ss_pred CCCeEEEEEc--CCHHHHHHHHHHHHHCCCCeEEEE
Q 042780 58 NSMHKVTLEV--KGETQIVNLSEKLNAGGIAHKLWI 91 (122)
Q Consensus 58 ~g~~KVvLkv--~~e~eL~~l~~~a~~~gi~~~l~~ 91 (122)
.|++||++-+ ++.+++.+-.+.+...|.+..-|+
T Consensus 17 ~g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR 52 (258)
T 4h3d_A 17 EGRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWR 52 (258)
T ss_dssp SSSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEe
Confidence 6999999876 577888877788888899888887
No 55
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=23.39 E-value=85 Score=20.03 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=31.1
Q ss_pred hhHhhcccCCCCCCCeEEEEEcCC--HHHHHHHHHHHHHCCCCeEEE
Q 042780 46 PHTLQYCSPQNINSMHKVTLEVKG--ETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 46 ~~~~~w~~~~~~~g~~KVvLkv~~--e~eL~~l~~~a~~~gi~~~l~ 90 (122)
..+..++. .|+.|.|+-+.| ++-...+...++..++|++.+
T Consensus 22 ~~v~kai~----~gka~lViiA~D~~~~~~~~l~~~c~~~~vp~~~~ 64 (101)
T 1w41_A 22 RKSIQYAK----MGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEF 64 (101)
T ss_dssp HHHHHHHH----HTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHH----cCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 34556665 688888888775 556677788899999998876
No 56
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=23.27 E-value=1e+02 Score=20.00 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEE
Q 042780 59 SMHKVTLEVKGETQIVNLSEKLNAGGIAHKLWI 91 (122)
Q Consensus 59 g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~ 91 (122)
.|+||..=++ .+.+.++.+.+.+.|++...+.
T Consensus 2 ~Mk~I~aIIr-~~~~~~v~~aL~~~G~~g~Tv~ 33 (114)
T 3bzq_A 2 HMKLITAIVK-PFTLDDVKTSLEDAGVLGMTVS 33 (114)
T ss_dssp CEEEEEEEEC-GGGHHHHHHHHHHTTCCCCEEE
T ss_pred CcEEEEEEEC-HHHHHHHHHHHHHCCCCeEEEE
Confidence 5888888886 4689999999999999776665
No 57
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=23.10 E-value=91 Score=24.57 Aligned_cols=34 Identities=6% Similarity=0.058 Sum_probs=29.4
Q ss_pred EEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCC
Q 042780 64 TLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENI 97 (122)
Q Consensus 64 vLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt 97 (122)
.+-++|+++|..|.+.+.+.|.+..+..++.+|.
T Consensus 110 ~~~vds~~el~~l~~~a~~~~~~~~V~lrvn~g~ 143 (428)
T 2j66_A 110 CIIAESVEELFYIEELAEKENKTARVAIRINPDK 143 (428)
T ss_dssp EEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSS
T ss_pred EEEECCHHHHHHHHHHHHhhCCCceEEEEEcCCC
Confidence 6789999999999999998898888888887763
No 58
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=23.04 E-value=1.1e+02 Score=20.14 Aligned_cols=32 Identities=25% Similarity=0.182 Sum_probs=26.4
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEE
Q 042780 60 MHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIE 92 (122)
Q Consensus 60 ~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e 92 (122)
|+||.-=++. +.|.++.+.+.+.|++...+.|
T Consensus 1 MK~I~aIIr~-~kl~~vk~AL~~~G~~g~Tv~~ 32 (112)
T 3mhy_A 1 MKLVMAIIKP-FKLDEVREALTSLGIQGLTVSE 32 (112)
T ss_dssp CEEEEEEECG-GGHHHHHHHHHHHTCCCEEEEE
T ss_pred CEEEEEEECH-HHHHHHHHHHHHCCCCeEEEEE
Confidence 6788877774 5899999999999998887764
No 59
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}
Probab=22.87 E-value=1.2e+02 Score=24.94 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=30.4
Q ss_pred CCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 57 INSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 57 ~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
..+....|+...+++++.++.+.|++.+++..+.
T Consensus 52 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~vr 85 (521)
T 2ipi_A 52 FRGRPDVVYVVHTADQVVDAVNQAMAAGQRIAVR 85 (521)
T ss_dssp CCCCCSEEEECSSHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEEE
Confidence 3678899999999999999999999999988754
No 60
>1vr4_A Hypothetical protein APC22750; structural genomics, pentamer, PSI, PR structure initiative, the midwest center for structural GEN MCSG; 2.09A {Bacillus cereus} SCOP: d.230.5.1 PDB: 2gtc_A
Probab=22.85 E-value=1.4e+02 Score=19.65 Aligned_cols=35 Identities=6% Similarity=0.062 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHCCCCeEEEE-----EeCCCCceEEEEc
Q 042780 70 ETQIVNLSEKLNAGGIAHKLWI-----EQPENIPTCLATK 104 (122)
Q Consensus 70 e~eL~~l~~~a~~~gi~~~l~~-----e~~~gt~Tvlaig 104 (122)
++.|.++.++|++.|=+.-+=. ++..|..-++|.|
T Consensus 59 ~~A~~rm~~~A~~lGAnAVVgvr~d~~~i~~~~~~v~ayG 98 (103)
T 1vr4_A 59 DIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSG 98 (103)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEEEEEEEGGGEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEeeeeCCceEEEEEEE
Confidence 5789999999999997765443 4555556666665
No 61
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=22.61 E-value=1.2e+02 Score=19.67 Aligned_cols=41 Identities=7% Similarity=0.042 Sum_probs=32.5
Q ss_pred hhHhhcccCCCCCCCeEEEEEcCC--HHHHHHHHHHHHHCCCCeEEE
Q 042780 46 PHTLQYCSPQNINSMHKVTLEVKG--ETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 46 ~~~~~w~~~~~~~g~~KVvLkv~~--e~eL~~l~~~a~~~gi~~~l~ 90 (122)
..+..++. .|+.+.|+=+.| ++-...+...++..+||++.+
T Consensus 27 ~~v~kai~----~gka~lViiA~D~~~~~~~~l~~~c~~~~Vp~~~~ 69 (110)
T 3cpq_A 27 KRTIKFVK----HGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQH 69 (110)
T ss_dssp HHHHHHHH----TTCCSEEEECTTCBHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHH----cCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 44566766 799999998875 566777888899999998877
No 62
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=21.99 E-value=1.1e+02 Score=23.74 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=30.3
Q ss_pred EEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCC
Q 042780 63 VTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENI 97 (122)
Q Consensus 63 VvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt 97 (122)
+..-++|.+++..|.+.|.+.|.+..+..++..|.
T Consensus 104 i~~~vds~~~l~~l~~~a~~~~~~~~V~l~vdtG~ 138 (384)
T 1xfc_A 104 VQVAVSSLRQLDELLHAVRRTGRTATVTVKVDTGL 138 (384)
T ss_dssp CEEEECSHHHHHHHHHHHHHHCCCEEEEEEBCSSC
T ss_pred cEEEECCHHHHHHHHHHHHhcCCceEEEEEEECCC
Confidence 67889999999999999998888888888888773
No 63
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=21.88 E-value=1e+02 Score=23.06 Aligned_cols=44 Identities=7% Similarity=-0.071 Sum_probs=34.8
Q ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCC-ceEEEEcC
Q 042780 62 KVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENI-PTCLATKP 105 (122)
Q Consensus 62 KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt-~TvlaigP 105 (122)
-++.-++|.+.+..|.+.|.+.|.+..+..|+..|. .+=+|+-|
T Consensus 99 ~~i~sVds~~~a~~l~~~a~~~~~~~~V~lqVntG~e~~R~G~~~ 143 (245)
T 3sy1_A 99 DWCITIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQL 143 (245)
T ss_dssp SEEEEECCHHHHHHHHHHSCTTSCCEEEEEEBCCSCTTCCSSBCG
T ss_pred CEEEecCCHHHHHHHHHHHHHcCCCceEEEEEECCCCcCCcCCCH
Confidence 367889999999999999999999999999987762 34445544
No 64
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=21.80 E-value=1.7e+02 Score=20.09 Aligned_cols=43 Identities=7% Similarity=0.043 Sum_probs=30.9
Q ss_pred eEEEEEcC-CHHHHHHHHHHHHHCCCCeEEEEEeCCCCceEEEE
Q 042780 61 HKVTLEVK-GETQIVNLSEKLNAGGIAHKLWIEQPENIPTCLAT 103 (122)
Q Consensus 61 ~KVvLkv~-~e~eL~~l~~~a~~~gi~~~l~~e~~~gt~Tvlai 103 (122)
.++.+..+ +..-+....+.|++.|+++.++.+....+...|.+
T Consensus 65 ~~l~ing~l~~~~~~~YiklA~~~~i~fTiV~~~~~~~~~glVv 108 (133)
T 2ohw_A 65 VTLLINGELQYQSYSSYIQMASRYGVPFKIVSDLQFHTPLGIVI 108 (133)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHTTCCEEEECCCSSCCSEEEEE
T ss_pred cEEEEcCCCCHHHHHHHHHHHHHcCCCeEEecCCCCCCCeEEEE
Confidence 55666555 56788899999999999999998744344444444
No 65
>3oaj_A Putative ring-cleaving dioxygenase MHQO; structural genomics, protein structure initiative, PSI-biolo unknown function; 1.40A {Bacillus subtilis subsp}
Probab=21.56 E-value=2.7e+02 Score=21.15 Aligned_cols=61 Identities=16% Similarity=0.243 Sum_probs=42.4
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHCCCCeE----------EEEEeCCCCceEEEEc-CCC--CcchhhhhCCCCC
Q 042780 60 MHKVTLEVKGETQIVNLSEKLNAGGIAHK----------LWIEQPENIPTCLATK-PYP--KSTVSLVFKKLKL 120 (122)
Q Consensus 60 ~~KVvLkv~~e~eL~~l~~~a~~~gi~~~----------l~~e~~~gt~Tvlaig-P~~--~~~i~~itg~LkL 120 (122)
..-|.+.|+|.+++.+..+.+++.|++.. ++..=|.|..-=|+.. |+. .|.+..+=.+|+|
T Consensus 216 ~~HiAf~v~d~~~l~~~~~~L~~~G~~~~~~~~r~~~~siYfrDP~G~~iEl~td~pgf~~De~~~~lg~~l~l 289 (335)
T 3oaj_A 216 VHHIAWRANDDEDQLDWQRYIASHGYGVTPVRDRNYFNAIYFREHGEILFEIATDPPGFAHDETQETMGEKLML 289 (335)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHTTCCCCCCEECSSSEEEEEECTTSCEEEEEESCSCTTSSSCTTTTTSSBCC
T ss_pred eEEEEEEcCCHHHHHHHHHHHHHCCCCccccccCCcEEEEEEECCCCcEEEEEeCCCCCCcCCChHHhCccccC
Confidence 44689999999999999999999998742 3345577887777775 653 2334443334443
No 66
>1mpy_A Catechol 2,3-dioxygenase; extradiol dioxygenase, non heme iron dioxygenase, metapyrocatechase, oxidoreductase; 2.80A {Pseudomonas putida} SCOP: d.32.1.3 d.32.1.3
Probab=21.44 E-value=1.6e+02 Score=21.32 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 59 SMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 59 g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
+..-+.+.|+|.+++..+.+.++++|+...
T Consensus 64 ~~~~~~f~v~~~~dv~~~~~~l~~~G~~~~ 93 (307)
T 1mpy_A 64 GMDFMGFKVVDEDALRQLERDLMAYGCAVE 93 (307)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHHTCCCE
T ss_pred CcceEEEEeCCHHHHHHHHHHHHHcCCcee
Confidence 445689999999999999999999998754
No 67
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Probab=21.31 E-value=1.5e+02 Score=24.34 Aligned_cols=34 Identities=6% Similarity=-0.071 Sum_probs=30.5
Q ss_pred CCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeEEE
Q 042780 57 INSMHKVTLEVKGETQIVNLSEKLNAGGIAHKLW 90 (122)
Q Consensus 57 ~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~ 90 (122)
..+....|+...|++++.++.+.|++.+++..+.
T Consensus 39 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ 72 (503)
T 1zr6_A 39 VDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAK 72 (503)
T ss_dssp GCCCCSEEEECCSHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEE
Confidence 4688899999999999999999999999988754
No 68
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=21.31 E-value=1.5e+02 Score=19.85 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=26.5
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHCCCCeEEEEE
Q 042780 60 MHKVTLEVKGETQIVNLSEKLNAGGIAHKLWIE 92 (122)
Q Consensus 60 ~~KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e 92 (122)
|+||.-=+.. +.|.++.+.+.+.|++...+.+
T Consensus 1 MK~I~AIIrp-~kl~~Vk~AL~~~G~~g~Tv~~ 32 (119)
T 3ncq_A 1 MKKIEAIVRA-EKFPEVKAALEERGFYGMTVTD 32 (119)
T ss_dssp CEEEEEEECT-TTHHHHHHHHHHTTCCCEEEEE
T ss_pred CeEEEEEECH-HHHHHHHHHHHHCCCCeEEEEe
Confidence 6778777775 5799999999999999887764
No 69
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=21.18 E-value=1e+02 Score=24.43 Aligned_cols=34 Identities=9% Similarity=-0.014 Sum_probs=30.0
Q ss_pred EEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCC
Q 042780 63 VTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPEN 96 (122)
Q Consensus 63 VvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~g 96 (122)
+..-+.|.+++..|.+.|.+.|.+..++.++..|
T Consensus 114 i~~~V~s~~~l~~l~~~a~~~~~~~~V~lkVdtG 147 (376)
T 3kw3_A 114 IIPLLNSWSTIEDWQTLCQKKNKKFPAIIQVDTN 147 (376)
T ss_dssp CEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCSS
T ss_pred CEEEECCHHHHHHHHHHHHHcCCCeEEEEEECCC
Confidence 5677999999999999999999888888888776
No 70
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=20.63 E-value=1.1e+02 Score=24.10 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=29.6
Q ss_pred E-EEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCC
Q 042780 63 V-TLEVKGETQIVNLSEKLNAGGIAHKLWIEQPEN 96 (122)
Q Consensus 63 V-vLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~g 96 (122)
| .+-++|+++|..|.+.+.+.|.+..+..++.+|
T Consensus 128 i~~~~vds~~el~~l~~~a~~~~~~~~v~lrvn~g 162 (434)
T 1twi_A 128 IRAFNVDSISELILINETAKELGETANVAFRINPN 162 (434)
T ss_dssp CSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECC
T ss_pred CCEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCC
Confidence 5 678999999999999999889888888888776
No 71
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=20.50 E-value=1.4e+02 Score=17.42 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHCCCCeEEEEE----eCCCCceEEEEcCCCCcchh
Q 042780 72 QIVNLSEKLNAGGIAHKLWIE----QPENIPTCLATKPYPKSTVS 112 (122)
Q Consensus 72 eL~~l~~~a~~~gi~~~l~~e----~~~gt~TvlaigP~~~~~i~ 112 (122)
.+.+..+.+++.|+......+ .++| +|+.--|.+-+.+.
T Consensus 17 ~~~~A~~~L~~~Gl~~~~~~~~~~~~~~G--~Vi~q~P~~G~~v~ 59 (71)
T 3ouv_A 17 TVDVAQKNMNVYGFTKFSQASVDSPRPAG--EVTGTNPPAGTTVP 59 (71)
T ss_dssp BHHHHHHHHHHTTCCCEEEEEECCSSCTT--BEEEEESCTTCEEE
T ss_pred CHHHHHHHHHHCCCeEEEEEEeCCCCCCC--EEEEeeCCCCCCcC
Confidence 456777888999998765543 3344 78888887766654
No 72
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=20.49 E-value=63 Score=24.94 Aligned_cols=36 Identities=8% Similarity=0.169 Sum_probs=29.5
Q ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCC
Q 042780 62 KVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENI 97 (122)
Q Consensus 62 KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt 97 (122)
.+.+-++|.+++..|.+.+.+.|.+..+..++..|.
T Consensus 106 ~i~~~vds~~~l~~l~~~a~~~~~~~~V~l~vd~g~ 141 (376)
T 3anu_A 106 AFHVLLDRPEALASLRQRPLGHGKRWLVWLKLDCGN 141 (376)
T ss_dssp CEEEEECCHHHHHHHHTSCCCTTCCEEEEEEECCC-
T ss_pred cEEEEeCCHHHHHHHHHHHHhCCCceEEEEEECCCC
Confidence 467779999999999888888888888888888764
No 73
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=20.41 E-value=94 Score=21.19 Aligned_cols=65 Identities=9% Similarity=-0.017 Sum_probs=42.8
Q ss_pred hhHhhcccCCCCCCCeEEEEEcCCHH--HH-HHHHHHHHHCCCCeEEEE---EeC--CC--C-ceEEEEcCCCCcchhhh
Q 042780 46 PHTLQYCSPQNINSMHKVTLEVKGET--QI-VNLSEKLNAGGIAHKLWI---EQP--EN--I-PTCLATKPYPKSTVSLV 114 (122)
Q Consensus 46 ~~~~~w~~~~~~~g~~KVvLkv~~e~--eL-~~l~~~a~~~gi~~~l~~---e~~--~g--t-~TvlaigP~~~~~i~~i 114 (122)
..+..++. .|+.|.|+=+.|-. +. ..+...++..+||++.+- |+. -| . ..++||-....+.+...
T Consensus 47 ~~v~kal~----~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~eLG~a~G~~~~v~~vaI~d~~~s~i~~~ 122 (135)
T 2aif_A 47 NEATKALN----RGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALGRACGVSRPVIAAAITSKDGSSLSSQ 122 (135)
T ss_dssp HHHHHHHH----TTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHHHHHHTTCSSCCSEEEEECCTTCTTHHH
T ss_pred HHHHHHHH----cCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHHHHHHhCCCCcEEEEEEEcCCcHHHHHH
Confidence 44677777 89999999887643 33 788899999999997553 211 11 2 23577765555555443
No 74
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=20.40 E-value=41 Score=25.45 Aligned_cols=19 Identities=5% Similarity=-0.015 Sum_probs=15.6
Q ss_pred CCCCceEEEEcCCCCcchh
Q 042780 94 PENIPTCLATKPYPKSTVS 112 (122)
Q Consensus 94 ~~gt~TvlaigP~~~~~i~ 112 (122)
.+|.++++|+||+..+.+.
T Consensus 13 ~~g~l~lVG~GpGd~~lLT 31 (280)
T 1s4d_A 13 EKGSVWLVGAGPGDPGLLT 31 (280)
T ss_dssp CSSCEEEEECBSSCTTSSB
T ss_pred CCcEEEEEecCCCCHHHHH
Confidence 4689999999999877653
No 75
>2wl9_A Catechol 2,3-dioxygenase; aromatic hydrocarbons catabolism, iron, oxidoreductase; 1.90A {Rhodococcus SP} PDB: 2wl3_A
Probab=20.31 E-value=1.3e+02 Score=22.02 Aligned_cols=30 Identities=7% Similarity=0.072 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 59 SMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 59 g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
|..-+.+.++|.+++.+..+.++++|+...
T Consensus 209 ~~~hiaf~v~d~~~v~~~~~~l~~~G~~~~ 238 (305)
T 2wl9_A 209 RINHLMIEYTHLDDLGYAHDLVRQQKIDVT 238 (305)
T ss_dssp SEEEEEEEESSHHHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEEcCCHHHHHHHHHHHHHcCCCcc
Confidence 345699999999999999999999998764
No 76
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=20.25 E-value=1.3e+02 Score=19.64 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=25.9
Q ss_pred CCCCeEEEEEcCCHHHHHHHHHHHHHCCCCeE
Q 042780 57 INSMHKVTLEVKGETQIVNLSEKLNAGGIAHK 88 (122)
Q Consensus 57 ~~g~~KVvLkv~~e~eL~~l~~~a~~~gi~~~ 88 (122)
..+-.+||-|..|+ -=+++.+.|+++|||..
T Consensus 14 ~~~AP~VvAKG~~~-~A~~I~e~A~e~gVPi~ 44 (93)
T 2vt1_B 14 IAPAPFISLIETNQ-CALAVRKYANEVGIPTV 44 (93)
T ss_dssp TCSSCEEEEEEEHH-HHHHHHHHHHHTTCCEE
T ss_pred CCCCCEEEEEeCcH-HHHHHHHHHHHcCCCEE
Confidence 35789999999986 45689999999999974
No 77
>3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis} PDB: 4exw_A
Probab=20.25 E-value=58 Score=23.96 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.2
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHCC
Q 042780 60 MHKVTLEVKGETQIVNLSEKLNAGG 84 (122)
Q Consensus 60 ~~KVvLkv~~e~eL~~l~~~a~~~g 84 (122)
-+||++.+++.++|++....--..|
T Consensus 17 G~~V~vdve~~~~~l~v~R~yG~~G 41 (184)
T 3kdv_A 17 GAKVTVDVESADKLLDVQRQYGRLG 41 (184)
T ss_dssp CCEEEEEESSGGGHHHHHHHHHTTT
T ss_pred CceEEEecCCHHHHHHHHHHhhhcC
Confidence 4689999999999999999988777
No 78
>3rpf_A Molybdopterin synthase catalytic subunit; MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=20.20 E-value=1.5e+02 Score=20.84 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=28.6
Q ss_pred CCeEEEEEcC---CHHHHHHHHHHHHHCCCCeEEEE---EeCCCCceE
Q 042780 59 SMHKVTLEVK---GETQIVNLSEKLNAGGIAHKLWI---EQPENIPTC 100 (122)
Q Consensus 59 g~~KVvLkv~---~e~eL~~l~~~a~~~gi~~~l~~---e~~~gt~Tv 100 (122)
|-...-++.- -+++|.++.+++++.++...++. .+++|...+
T Consensus 45 ~V~~L~ye~y~~ma~~~l~~I~~ea~~~~~~v~i~HR~G~l~~Ge~~v 92 (148)
T 3rpf_A 45 NIQGLSFDIYEALLKTWFEKWHHKAKDLGVVLKMAHSLGDVLIGQSSF 92 (148)
T ss_dssp TCCEEEEEECHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEETTCEEE
T ss_pred CEeEEEEEcCHHHHHHHHHHHHHHHhhcCCEEEEEEEEcccCCCCEEE
Confidence 4566777765 27899999999999986333333 666765443
No 79
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}
Probab=20.00 E-value=1.6e+02 Score=22.02 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=34.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCeEEEEEeCCCC-ceEEEEcC
Q 042780 62 KVTLEVKGETQIVNLSEKLNAGGIAHKLWIEQPENI-PTCLATKP 105 (122)
Q Consensus 62 KVvLkv~~e~eL~~l~~~a~~~gi~~~l~~e~~~gt-~TvlaigP 105 (122)
-++.-+.|.+.+..|.+.|...|.+..+..|+.-|. .+=+|+-|
T Consensus 99 ~~i~sVds~~~a~~L~~~a~~~g~~~~V~LqVdtG~e~~R~Gv~~ 143 (244)
T 3r79_A 99 DVVESIDREKIARALSEECARQGRSLRFYVQVNTGLEPQKAGIDP 143 (244)
T ss_dssp SEEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCTTCCTTSCSBCH
T ss_pred CEEEeeCCHHHHHHHHHHHHHcCCCceEEEEEECCCCcCCCCCCH
Confidence 377889999999999999999998888888987763 34445544
Done!