BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042782
(527 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 437 bits (1125), Expect = e-123, Method: Compositional matrix adjust.
Identities = 226/475 (47%), Positives = 304/475 (64%), Gaps = 19/475 (4%)
Query: 62 PTELLRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAH 121
P L L + G+L D AS DFG ++ A P AVL+P+S D+ ++ AA +
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGW 76
Query: 122 GFTISARGHGHSINGQAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYEKERYVDVWGGE 181
+TI+ RG GHS+ GQA GVV+ M A R +V RYVD G +
Sbjct: 77 PYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAA------APPRINVSADGRYVDAGGEQ 130
Query: 182 LWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKG 241
+WIDVLR++L G+AP+SWTDYLYL+VGGTLSNAGISGQAF GPQI+NV E+DV+TG G
Sbjct: 131 VWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHG 190
Query: 242 ELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEY 301
E++TCS++ N+ LF AVLGGLGQFG+ITRARI++EPAP R RW+R++Y+DF+ F+ DQE
Sbjct: 191 EMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQER 250
Query: 302 LISLHELPASQKF---DYVEGFVIVDEGLINNW-RSSFFSPRNPVKITSLG--TDGGVLY 355
L + F YVEG V V++ L + + FF+ + +I +L + +Y
Sbjct: 251 LTAPRPGGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVY 310
Query: 356 CLEITKNYDE--STADTTDQEVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSK 413
+E T NYD + A DQE+ S+L L++++ F D+ Y FLDRVH +E+ L
Sbjct: 311 SIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGSEVALNKL 370
Query: 414 GLWEVPHPWLNLFIPKSRIADFDKGVFKGIL-GNKTGGPILIYPMNKHKWDNRSSVVTPD 472
GLW VPHPWLN+F+P+SRIADFD+GVFKGIL G GP+++YP+NK WD+ S TP
Sbjct: 371 GLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPS 430
Query: 473 EDVFYLVAFLRSALDNGEEMQSLEYLNHQNRQILKFCDEAGIKAKQYLPHYTTQE 527
EDVFY V+ L S++ L L QNR+IL+FCD AGI+ K YL +T +
Sbjct: 431 EDVFYAVSLLFSSV----APNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRS 481
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 437 bits (1123), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/475 (47%), Positives = 302/475 (63%), Gaps = 19/475 (4%)
Query: 62 PTELLRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAH 121
P L L + G+L D AS DFG ++ A P AVL+P+S D+ ++ AA +
Sbjct: 35 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGW 94
Query: 122 GFTISARGHGHSINGQAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYEKERYVDVWGGE 181
+TI+ RG GHS+ GQA GVV+ M A R +V RYVD G +
Sbjct: 95 PYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAA------APPRINVSADGRYVDAGGEQ 148
Query: 182 LWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKG 241
+WIDVLR++L G+AP+SWTDYLYL+VGGTLSNAGISGQAF GPQI+NV E+DV+TG G
Sbjct: 149 VWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHG 208
Query: 242 ELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEY 301
E++TCS++ N+ LF AVLGGLGQFG+ITRARI++EPAP R RW+R +Y+DF+ F+ DQE
Sbjct: 209 EMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQER 268
Query: 302 LISLHELPASQKF---DYVEGFVIVDEGLINNW-RSSFFSPRNPVKITSLG--TDGGVLY 355
L + F YVEG V V++ L + + FF+ + +I +L + +Y
Sbjct: 269 LTAPRPGGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVY 328
Query: 356 CLEITKNYDE--STADTTDQEVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSK 413
+E T NYD + A DQE+ S+L L++++ F D+ Y FLDRVH E+ L
Sbjct: 329 SIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKL 388
Query: 414 GLWEVPHPWLNLFIPKSRIADFDKGVFKGIL-GNKTGGPILIYPMNKHKWDNRSSVVTPD 472
GLW VPHPWLN+F+P+SRIADFD+GVFKGIL G GP+++YP+NK WD+ S TP
Sbjct: 389 GLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPS 448
Query: 473 EDVFYLVAFLRSALDNGEEMQSLEYLNHQNRQILKFCDEAGIKAKQYLPHYTTQE 527
EDVFY V+ L S++ L L QNR+IL+FCD AGI+ K YL +T +
Sbjct: 449 EDVFYAVSLLFSSV----APNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRS 499
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/475 (47%), Positives = 303/475 (63%), Gaps = 19/475 (4%)
Query: 62 PTELLRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAH 121
P L L + G+L D AS DFG ++ A P AVL+P+S D+ ++ AA +
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGW 76
Query: 122 GFTISARGHGHSINGQAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYEKERYVDVWGGE 181
+TI+ RG GHS+ GQA GVV+ M A R +V RYVD G +
Sbjct: 77 PYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAA------APPRINVSADGRYVDAGGEQ 130
Query: 182 LWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKG 241
+WIDVLR++L G+AP+SWTDYLYL+VGGTLSNAGISGQAF GPQI+NV E+DV+TG G
Sbjct: 131 VWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHG 190
Query: 242 ELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEY 301
E++TCS++ N+ LF AVLGGLGQFG+ITRARI++EPAP R RW+R++Y+DF+ F+ DQE
Sbjct: 191 EMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQER 250
Query: 302 LISLHELPASQKF---DYVEGFVIVDEGLINNW-RSSFFSPRNPVKITSLG--TDGGVLY 355
L + F YVEG V V++ L + + FF+ + +I +L + +Y
Sbjct: 251 LTAPRPGGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVY 310
Query: 356 CLEITKNYDE--STADTTDQEVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSK 413
+E T NYD + A DQE+ S+L L++++ F D+ Y FLDRVH E+ L
Sbjct: 311 SIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKL 370
Query: 414 GLWEVPHPWLNLFIPKSRIADFDKGVFKGIL-GNKTGGPILIYPMNKHKWDNRSSVVTPD 472
GLW VPHPWLN+F+P+SRIADFD+GVFKGIL G GP+++YP+NK WD+ S TP
Sbjct: 371 GLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPS 430
Query: 473 EDVFYLVAFLRSALDNGEEMQSLEYLNHQNRQILKFCDEAGIKAKQYLPHYTTQE 527
EDVFY V+ L S++ L L QNR+IL+FCD AGI+ K YL +T +
Sbjct: 431 EDVFYAVSLLFSSV----APNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRS 481
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 434 bits (1117), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/475 (47%), Positives = 303/475 (63%), Gaps = 19/475 (4%)
Query: 62 PTELLRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAH 121
P L L + G+L D AS DFG ++ A P AVL+P+S D+ ++ AA +
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGW 76
Query: 122 GFTISARGHGHSINGQAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYEKERYVDVWGGE 181
+TI+ RG GHS+ GQA GVV+ M A R +V RYVD G +
Sbjct: 77 PYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAA------APPRINVSADGRYVDAGGEQ 130
Query: 182 LWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKG 241
+WIDVLR++L G+AP+SWT+YLYL+VGGTLSNAGISGQAF GPQI+NV E+DV+TG G
Sbjct: 131 VWIDVLRASLARGVAPRSWTEYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHG 190
Query: 242 ELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEY 301
E++TCS++ N+ LF AVLGGLGQFG+ITRARI++EPAP R RW+R++Y+DF+ F+ DQE
Sbjct: 191 EMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQER 250
Query: 302 LISLHELPASQKF---DYVEGFVIVDEGLINNW-RSSFFSPRNPVKITSLG--TDGGVLY 355
L + F YVEG V V++ L + + FF+ + +I +L + +Y
Sbjct: 251 LTAPRPGGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVY 310
Query: 356 CLEITKNYDE--STADTTDQEVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSK 413
+E T NYD + A DQE+ S+L L++++ F D+ Y FLDRVH E+ L
Sbjct: 311 SIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKL 370
Query: 414 GLWEVPHPWLNLFIPKSRIADFDKGVFKGIL-GNKTGGPILIYPMNKHKWDNRSSVVTPD 472
GLW VPHPWLN+F+P+SRIADFD+GVFKGIL G GP+++YP+NK WD+ S TP
Sbjct: 371 GLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPS 430
Query: 473 EDVFYLVAFLRSALDNGEEMQSLEYLNHQNRQILKFCDEAGIKAKQYLPHYTTQE 527
EDVFY V+ L S++ L L QNR+IL+FCD AGI+ K YL +T +
Sbjct: 431 EDVFYAVSLLFSSV----APNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRS 481
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 434 bits (1117), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/475 (47%), Positives = 302/475 (63%), Gaps = 19/475 (4%)
Query: 62 PTELLRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAH 121
P L L + G+L D AS DFG ++ A P AVL+P+S D+ ++ AA +
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGW 76
Query: 122 GFTISARGHGHSINGQAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYEKERYVDVWGGE 181
+TI+ RG GHS+ GQA GVV+ M A R +V RYVD G +
Sbjct: 77 PYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAA------APPRINVSADGRYVDAGGEQ 130
Query: 182 LWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKG 241
+WIDVLR++L G+AP+SWTDYLYL+VGGTLSNAGISGQAF GPQI+NV E+DV+TG G
Sbjct: 131 VWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHG 190
Query: 242 ELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEY 301
E++TCS++ N+ LF AVLGGLGQFG+ITRARI++EPAP R RW+R++Y+DF+ F+ DQE
Sbjct: 191 EMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQER 250
Query: 302 LISLHELPASQKF---DYVEGFVIVDEGLINNW-RSSFFSPRNPVKITSLG--TDGGVLY 355
L + F YVEG V V++ L + + FF+ + +I +L + +Y
Sbjct: 251 LTAPRPGGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVY 310
Query: 356 CLEITKNYDE--STADTTDQEVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSK 413
+E T NYD + A DQE+ S+L L++++ F D+ Y FLDRVH E+ L
Sbjct: 311 SIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKL 370
Query: 414 GLWEVPHPWLNLFIPKSRIADFDKGVFKGIL-GNKTGGPILIYPMNKHKWDNRSSVVTPD 472
GLW VPHPWLN+F+P+SRIADFD+GVFKGIL G GP+++YP+NK WD+ S TP
Sbjct: 371 GLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPS 430
Query: 473 EDVFYLVAFLRSALDNGEEMQSLEYLNHQNRQILKFCDEAGIKAKQYLPHYTTQE 527
EDVFY V+ L S++ L L QNR+IL+FCD AGI+ K Y +T +
Sbjct: 431 EDVFYAVSLLFSSV----APNDLARLQEQNRRILRFCDLAGIQYKTYAARHTDRS 481
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 433 bits (1113), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/475 (47%), Positives = 302/475 (63%), Gaps = 19/475 (4%)
Query: 62 PTELLRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAH 121
P L L + G+L D AS DFG ++ A P AVL+P+S D+ ++ AA +
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGW 76
Query: 122 GFTISARGHGHSINGQAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYEKERYVDVWGGE 181
+TI+ RG GHS+ GQA GVV+ M A R +V RYVD G +
Sbjct: 77 PYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAA------APPRINVSADGRYVDAGGEQ 130
Query: 182 LWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKG 241
+WIDVLR++L G+AP+SWTDYLYL+VGGTLSNAGISGQAF GPQI+NV E+DV+TG G
Sbjct: 131 VWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHG 190
Query: 242 ELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEY 301
E++TCS++ N+ LF AVLGGLGQFG+ITRARI++EPAP R RW+R++Y+DF+ F+ DQE
Sbjct: 191 EMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQER 250
Query: 302 LISLHELPASQKF---DYVEGFVIVDEGLINNW-RSSFFSPRNPVKITSLG--TDGGVLY 355
L + F YVEG V V++ L + + FF+ + +I +L + +Y
Sbjct: 251 LTAPRPGGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVY 310
Query: 356 CLEITKNYDE--STADTTDQEVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSK 413
+E T NYD + A DQE+ S+L L++++ F D+ Y FLDRVH E+ L
Sbjct: 311 SIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKL 370
Query: 414 GLWEVPHPWLNLFIPKSRIADFDKGVFKGIL-GNKTGGPILIYPMNKHKWDNRSSVVTPD 472
GLW VPHPWLN+F+P+SRIADFD+GVFKGIL G G +++YP+NK WD+ S TP
Sbjct: 371 GLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGQLIVYPLNKSMWDDGMSAATPS 430
Query: 473 EDVFYLVAFLRSALDNGEEMQSLEYLNHQNRQILKFCDEAGIKAKQYLPHYTTQE 527
EDVFY V+ L S++ L L QNR+IL+FCD AGI+ K YL +T +
Sbjct: 431 EDVFYAVSLLFSSV----APNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRS 481
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/465 (46%), Positives = 293/465 (63%), Gaps = 16/465 (3%)
Query: 68 LGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISA 127
L + G++ A DFG + +P AV+ P +DI VKAA S+ T++A
Sbjct: 34 LNIQGEILCGGAAADIAGRDFGGXNCVKPLAVVRPVGPEDIAGAVKAALRSDK--LTVAA 91
Query: 128 RGHGHSINGQAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYEKERYVDVWGGELWIDVL 187
RG+GHSINGQA G+V+ + + +VDV GG LW DVL
Sbjct: 92 RGNGHSINGQAXAEGGLVVDXSTTAENHFEVGYLSG-----GDATAFVDVSGGALWEDVL 146
Query: 188 -RSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTC 246
R E+GLAP+SWTDYL L+VGGTLSNAG+SGQAF GPQ +NV ELDVVTG G+++TC
Sbjct: 147 KRCVSEYGLAPRSWTDYLGLTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTC 206
Query: 247 SEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYLISLH 306
SE +NS LF +VLGGLGQFGIITRAR+ L+PAP VRWIRV+Y++F FT+D E+L+S
Sbjct: 207 SEIENSELFFSVLGGLGQFGIITRARVLLQPAPDXVRWIRVVYTEFDEFTQDAEWLVSQK 266
Query: 307 ELPASQKFDYVEGFVIVDEG-LINNWRSSFFSPRNPVKITSLGTD-GGVLYCLEITKNYD 364
FDYVEGFV V+ +N W + P + T L G VLYCLE+ +Y
Sbjct: 267 N---ESSFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYR 323
Query: 365 ESTADTT-DQEVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSKGLWEVPHPWL 423
+S +++T D+ VE L+ +L F + F DL YVDFL RV ++E + G WE PHPWL
Sbjct: 324 DSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPHPWL 383
Query: 424 NLFIPKSRIADFDKGVFKGILGNKTGGPILIYPMNKHKWDNRSSVVTPDE-DVFYLVAFL 482
NLF+ K I DF++ VFK ++ N GP L+YP+ + +WD+R+SVV P+E ++FY+VA L
Sbjct: 384 NLFVSKRDIGDFNRTVFKELVKNGVNGPXLVYPLLRSRWDDRTSVVIPEEGEIFYIVALL 443
Query: 483 RSALDNGEEMQSLEYLNHQNRQILKFCDEAGIKAKQYLPHYTTQE 527
R + ++ S+E QN++I+ +C + GI K YLPHY +QE
Sbjct: 444 R-FVPPCAKVSSVEKXVAQNQEIVHWCVKNGIDYKLYLPHYKSQE 487
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With
Fad And Covalently Bound Btz043
Length = 468
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 98 AVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMXXXXXXXXX 157
+VL + + I R V A E G + ARG G S AQ G+VI M
Sbjct: 33 SVLSTSDPEVIVRAVTRAAEEGGRG--VIARGLGRSYGDNAQNGGGLVIDM--------- 81
Query: 158 XXTPAALRPHVYEK-ERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAG 216
PA R H + R VDV G ++++ L HGL ++VGG +
Sbjct: 82 ---PALNRIHSIDSGTRLVDVDAGVSLDQLMKAALPHGLWVPVLPGTRQVTVGGAI-GCD 137
Query: 217 ISGQAFHQGPQITN-VHELDVVTGKGELLTCSEE-QNSGLFHAVLGGLGQFGIITRARIS 274
I G+ H N V ++++T GE+ + +S LF A +GG G GII RA I
Sbjct: 138 IHGKNHHSAGSFGNHVRSMELLTANGEVRHLTPAGPDSDLFWATVGGNGLTGIILRATIE 197
Query: 275 LEP 277
+ P
Sbjct: 198 MTP 200
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 20/181 (11%)
Query: 104 SADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMXXXXXXXXXXXTPAA 163
SA D+ + V+ A + +G IS R GH+ NG A G+V+ +
Sbjct: 47 SAGDVAKSVRYACD---NGLEISVRSGGHNPNGYATNDGGIVLDLRLMNSI--------- 94
Query: 164 LRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVG--GTLSNAGISGQA 221
H+ + GG + D+++ + GLA + ++ VG G N G+
Sbjct: 95 ---HIDTAGSRARIGGGVISGDLVKEAAKFGLAAVTG---MHPKVGFCGLALNGGVGFLT 148
Query: 222 FHQGPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKR 281
G N+ +VT G+++ CS+++ LF AV G FG++T + L P++
Sbjct: 149 PKYGLASDNILGATLVTATGDVIYCSDDERPELFWAVRGAGPNFGVVTEVEVQLYELPRK 208
Query: 282 V 282
+
Sbjct: 209 M 209
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
Length = 403
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 133 SINGQAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYEK-ERYVDVWGGELWIDVLRSTL 191
S AQ G+VI M PA R H + R VDV G ++++ L
Sbjct: 1 SYGDNAQNGGGLVIDM------------PALNRIHSIDSGTRLVDVDAGVSLDQLMKAAL 48
Query: 192 EHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITN-VHELDVVTGKGELLTCSEE- 249
HGL ++VGG + I G+ H N V ++++T GE+ +
Sbjct: 49 PHGLWVPVLPGTRQVTVGGAIG-CDIHGKNHHSAGSFGNHVRSMELLTANGEVRHLTPAG 107
Query: 250 QNSGLFHAVLGGLGQFGIITRARISLEP 277
+S LF A +GG G GII RA I + P
Sbjct: 108 PDSDLFWATVGGNGLTGIILRATIEMTP 135
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Hexagonal Crystal Form
pdb|4FDO|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct319
pdb|4FDP|A Chain A, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FDP|B Chain B, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FEH|A Chain A, Mycobacterium Tuberculosis Dpre1 - Hexagonal Crystal Form
pdb|4FF6|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
pdb|4FF6|B Chain B, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
Length = 481
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 16/150 (10%)
Query: 131 GHSINGQAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYEKERYVDVWGGELWIDVLRST 190
G S AQ G+VI M TP + + VD+ G ++++
Sbjct: 77 GRSYGDNAQNGGGLVIDM-----------TPLNTIHSIDADTKLVDIDAGVNLDQLMKAA 125
Query: 191 LEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITN-VHELDVVTGKGEL--LTCS 247
L GL ++VGG ++ I G+ H N V +D++T GE+ LT +
Sbjct: 126 LPFGLWVPVLPGTRQVTVGGAIA-CDIHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPT 184
Query: 248 EEQNSGLFHAVLGGLGQFGIITRARISLEP 277
E ++ LF A +GG G GII RA I + P
Sbjct: 185 GE-DAELFWATVGGNGLTGIIMRATIEMTP 213
>pdb|2VFR|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2): Native
Enzyme
pdb|2VFS|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Xylitol
pdb|2VFT|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Sorbitol
pdb|2VFU|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Mannitol
pdb|2VFV|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Sulphite
Length = 422
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 13/150 (8%)
Query: 129 GHGHSINGQAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYEKERYVDVWGGELWIDVLR 188
G GHS N A+ +G V+ T A R V V GG + ++ R
Sbjct: 47 GSGHSFNEIAEPGDGGVLLSLAGLPSVVDVDTAA----------RTVRVGGGVRYAELAR 96
Query: 189 STLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCSE 248
GLA + ++SV G+++ G G G + V E+++VT G + +
Sbjct: 97 VVHARGLALPNMASLPHISVAGSVAT-GTHGSGVGNGSLASVVREVELVTADGSTVVIAR 155
Query: 249 EQNSGLFHAVLGGLGQFGIITRARISLEPA 278
F + LG G++T + LEPA
Sbjct: 156 GDER--FGGAVTSLGALGVVTSLTLDLEPA 183
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 79/209 (37%), Gaps = 15/209 (7%)
Query: 89 GMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQM 148
GM R P VL P DD+ ++V A + + I G G S+ S G++
Sbjct: 200 GMFERI-PDIVLWPTCHDDVVKIVNLACK---YNLCIIPIGGGTSV------SYGLMCPA 249
Query: 149 XXXXXXXXXXXTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLS- 207
+ V E V G ++ R E G D L S
Sbjct: 250 DETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFST 309
Query: 208 VGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGEL-LTCSEEQNS---GLFHAVLGGLG 263
VGG +S + G V + VVT +G + +C + S + H ++G G
Sbjct: 310 VGGWISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEG 369
Query: 264 QFGIITRARISLEPAPKRVRWIRVLYSDF 292
G+IT A I + P P+ ++ V + +F
Sbjct: 370 TLGVITEATIKIRPTPEYQKYGSVAFPNF 398
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 79/209 (37%), Gaps = 15/209 (7%)
Query: 89 GMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQM 148
GM R P VL P DD+ ++V A + + I G G S+ S G++
Sbjct: 200 GMFERI-PDIVLWPTCHDDVVKIVNLACK---YNLCIIPIGGGTSV------SYGLMCPA 249
Query: 149 XXXXXXXXXXXTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLS- 207
+ V E V G ++ R E G D L S
Sbjct: 250 DETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFST 309
Query: 208 VGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGEL-LTCSEEQNS---GLFHAVLGGLG 263
VGG +S + G V + VVT +G + +C + S + H ++G G
Sbjct: 310 VGGWISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEG 369
Query: 264 QFGIITRARISLEPAPKRVRWIRVLYSDF 292
G+IT A I + P P+ ++ V + +F
Sbjct: 370 TLGVITEATIKIRPTPEYQKYGSVAFPNF 398
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 79/209 (37%), Gaps = 15/209 (7%)
Query: 89 GMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQM 148
GM R P VL P DD+ ++V A + + I G G S+ S G++
Sbjct: 200 GMFERI-PDIVLWPTCHDDVVKIVNLACK---YNLCIIPIGGGTSV------SYGLMCPA 249
Query: 149 XXXXXXXXXXXTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLS- 207
+ V E V G ++ R E G D L S
Sbjct: 250 DETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFST 309
Query: 208 VGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGEL-LTCSEEQNS---GLFHAVLGGLG 263
VGG +S + G V + VVT +G + +C + S + H ++G G
Sbjct: 310 VGGWISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEG 369
Query: 264 QFGIITRARISLEPAPKRVRWIRVLYSDF 292
G+IT A I + P P+ ++ V + +F
Sbjct: 370 TLGVITEATIKIRPTPEYQKYGSVAFPNF 398
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 210 GTLSNAGISGQAFHQGPQIT-NVHELDVVT--------GKGELLTCSEEQNSGLFHAVLG 260
GT GISG H G + ++H L V + G ++ S +N+ LF + G
Sbjct: 130 GTCPGVGISGHFAHGGFGFSSHMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIKG 189
Query: 261 GLGQFGIITRARISLEPAPK 280
FGI+ +++ PAPK
Sbjct: 190 AGSNFGIVAVWKLATFPAPK 209
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 83/219 (37%), Gaps = 33/219 (15%)
Query: 77 DPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSING 136
DP +++ + L R VL P S +++ + K A +EA + G+ + G
Sbjct: 33 DPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLA--NEARVALVPQGGNTGLVGG 90
Query: 137 QAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYEKERYVDVWGGELWID---VLRSTLEH 193
Q + VVI + +K R +D + ++ +L+ E
Sbjct: 91 QTPHNGEVVISLKR------------------XDKIREIDTSSNTITVEAGAILQRVQEK 132
Query: 194 G-----LAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGE---LLT 245
L P S ++GG LS A G ++VV G LL+
Sbjct: 133 AAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDXALGVEVVLADGRVXNLLS 192
Query: 246 CSEEQNSG--LFHAVLGGLGQFGIITRARISLEPAPKRV 282
++ N+G L +G G GIIT A + L P P+ V
Sbjct: 193 KLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAV 231
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
Length = 584
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 175 VDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHEL 234
V + G EL + + + G P S + + ++GG L+ SG HQ + ++ ++
Sbjct: 211 VGIMGPELEKQLHKQGVSLGHDPDS---FEFSTLGGWLATCS-SG---HQSDKYGDIEDM 263
Query: 235 DV----VTGKGEL-LTCSEEQNSGLF--HAVLGGLGQFGIITRARISLEPAPKRVRWIRV 287
V VT G L L +G+ H +LG G GIIT A + + P+ V +
Sbjct: 264 AVSFRTVTPTGTLELRNGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGF 323
Query: 288 LYSDFS 293
L+ F+
Sbjct: 324 LFPTFA 329
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 225 GPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGLGQ-FGIITRARISLEPAPKRV 282
G NV + VV +G LL + F A+ GG G+ FGI+ ++ L P P +V
Sbjct: 174 GTAADNVIDAKVVDAQGRLLD-RKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKV 231
>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
pdb|1TKI|B Chain B, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
Length = 321
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Query: 329 NNWRSSFFSPR------NPVKITSLGTD----GGVLYCLEITKNYDESTADTTDQEVESL 378
+N+R F +P + + S TD G ++Y L + A+T Q +E++
Sbjct: 158 DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVL--LSGINPFLAETNQQIIENI 215
Query: 379 LK-KLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSKGLWEVPHPWLNLFIPK 429
+ + F + + + +DF+DR+ E K R + HPWL I +
Sbjct: 216 MNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQKIER 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,422,368
Number of Sequences: 62578
Number of extensions: 646738
Number of successful extensions: 1605
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1555
Number of HSP's gapped (non-prelim): 27
length of query: 527
length of database: 14,973,337
effective HSP length: 103
effective length of query: 424
effective length of database: 8,527,803
effective search space: 3615788472
effective search space used: 3615788472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)