Query 042782
Match_columns 527
No_of_seqs 394 out of 2713
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:24:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 2.9E-88 6.2E-93 728.2 38.2 480 36-527 3-485 (525)
2 KOG1231 Proteins containing th 100.0 3.8E-80 8.2E-85 629.8 24.9 420 68-527 36-465 (505)
3 PRK11230 glycolate oxidase sub 100.0 2.4E-52 5.2E-57 452.8 34.9 400 60-510 20-454 (499)
4 PLN02805 D-lactate dehydrogena 100.0 1.3E-52 2.9E-57 457.6 32.9 393 62-510 99-531 (555)
5 KOG1232 Proteins containing th 100.0 1E-47 2.3E-52 383.5 19.1 386 60-489 54-469 (511)
6 TIGR00387 glcD glycolate oxida 100.0 1.3E-46 2.9E-51 400.7 26.8 340 99-489 1-373 (413)
7 PF09265 Cytokin-bind: Cytokin 100.0 4.2E-48 9.1E-53 384.5 4.5 245 279-527 1-248 (281)
8 COG0277 GlcD FAD/FMN-containin 100.0 3.3E-42 7.1E-47 370.9 30.6 376 66-489 3-415 (459)
9 PRK11183 D-lactate dehydrogena 100.0 1.4E-36 3E-41 323.1 21.7 243 61-322 5-308 (564)
10 TIGR01676 GLDHase galactonolac 100.0 1.7E-34 3.7E-39 311.4 22.9 205 84-306 50-254 (541)
11 TIGR01678 FAD_lactone_ox sugar 100.0 3.8E-33 8.2E-38 298.2 23.1 203 85-305 4-206 (438)
12 TIGR01679 bact_FAD_ox FAD-link 100.0 6.3E-33 1.4E-37 295.8 22.1 200 85-305 1-200 (419)
13 TIGR01677 pln_FAD_oxido plant- 100.0 4.3E-32 9.3E-37 296.2 23.3 208 82-305 18-236 (557)
14 PRK11282 glcE glycolate oxidas 100.0 2.6E-31 5.7E-36 275.4 20.8 184 104-304 3-194 (352)
15 PLN02465 L-galactono-1,4-lacto 100.0 1.2E-30 2.6E-35 283.6 23.6 207 83-307 84-290 (573)
16 KOG1233 Alkyl-dihydroxyacetone 100.0 9.7E-28 2.1E-32 240.8 16.0 325 88-440 153-500 (613)
17 PF01565 FAD_binding_4: FAD bi 99.9 1.1E-26 2.5E-31 210.7 13.3 138 96-247 1-139 (139)
18 KOG4730 D-arabinono-1, 4-lacto 99.9 1.6E-23 3.5E-28 215.2 17.4 196 93-305 47-243 (518)
19 PRK13905 murB UDP-N-acetylenol 99.9 2.3E-23 5E-28 212.9 14.5 163 92-279 27-193 (298)
20 PRK12436 UDP-N-acetylenolpyruv 99.9 4E-22 8.7E-27 203.9 15.3 187 63-278 8-197 (305)
21 PRK13906 murB UDP-N-acetylenol 99.9 7E-21 1.5E-25 194.9 18.1 188 62-278 7-197 (307)
22 PRK14652 UDP-N-acetylenolpyruv 99.8 2.5E-20 5.4E-25 190.4 17.4 188 62-279 7-196 (302)
23 TIGR00179 murB UDP-N-acetyleno 99.8 9.6E-20 2.1E-24 184.8 14.8 159 92-278 9-175 (284)
24 PRK13903 murB UDP-N-acetylenol 99.8 7.7E-19 1.7E-23 182.8 15.4 176 92-294 29-209 (363)
25 PRK14649 UDP-N-acetylenolpyruv 99.8 6.5E-18 1.4E-22 172.2 14.3 165 92-279 17-193 (295)
26 PRK14653 UDP-N-acetylenolpyruv 99.7 5.2E-17 1.1E-21 165.2 14.4 159 92-279 30-194 (297)
27 COG0812 MurB UDP-N-acetylmuram 99.7 3E-15 6.5E-20 150.0 17.2 164 92-278 17-183 (291)
28 PRK14650 UDP-N-acetylenolpyruv 99.7 1E-15 2.2E-20 155.5 13.7 164 92-280 29-196 (302)
29 PRK00046 murB UDP-N-acetylenol 99.6 1.4E-15 3.1E-20 156.6 13.1 162 92-278 17-188 (334)
30 KOG1262 FAD-binding protein DI 99.6 1.1E-15 2.3E-20 154.9 7.8 137 165-301 114-251 (543)
31 PRK14648 UDP-N-acetylenolpyruv 99.6 1E-14 2.2E-19 150.3 13.3 165 92-279 26-237 (354)
32 PRK14651 UDP-N-acetylenolpyruv 99.4 2.5E-12 5.5E-17 129.1 14.9 151 92-278 17-170 (273)
33 PF02913 FAD-oxidase_C: FAD li 99.2 1.2E-11 2.5E-16 121.6 4.2 176 278-489 1-207 (248)
34 PRK13904 murB UDP-N-acetylenol 99.1 6.1E-10 1.3E-14 110.9 10.6 146 92-280 15-161 (257)
35 PF00941 FAD_binding_5: FAD bi 96.9 0.00068 1.5E-08 64.0 3.1 103 96-216 2-116 (171)
36 PRK09799 putative oxidoreducta 96.7 0.003 6.4E-08 63.6 6.2 140 98-274 4-155 (258)
37 TIGR02963 xanthine_xdhA xanthi 96.7 0.0038 8.1E-08 68.1 7.4 104 95-216 191-304 (467)
38 TIGR03312 Se_sel_red_FAD proba 96.4 0.0056 1.2E-07 61.6 6.2 100 99-216 4-110 (257)
39 PRK09971 xanthine dehydrogenas 95.5 0.018 3.9E-07 59.0 5.0 102 98-216 6-119 (291)
40 TIGR03199 pucC xanthine dehydr 95.1 0.014 3.1E-07 58.9 2.6 96 102-215 1-109 (264)
41 TIGR03195 4hydrxCoA_B 4-hydrox 95.0 0.019 4E-07 59.7 3.5 101 97-215 5-117 (321)
42 TIGR02969 mam_aldehyde_ox alde 93.3 0.17 3.6E-06 62.1 7.2 102 97-216 237-359 (1330)
43 COG1319 CoxM Aerobic-type carb 92.8 0.22 4.8E-06 50.7 6.2 104 96-216 3-118 (284)
44 PLN02906 xanthine dehydrogenas 92.8 0.11 2.5E-06 63.5 4.8 103 96-216 228-351 (1319)
45 COG4630 XdhA Xanthine dehydrog 92.3 0.28 6E-06 51.2 6.1 128 93-242 200-337 (493)
46 PLN00192 aldehyde oxidase 92.1 0.35 7.5E-06 59.5 7.7 107 96-216 233-353 (1344)
47 PF11278 DUF3079: Protein of u 63.4 2.5 5.4E-05 31.1 0.1 14 18-31 14-27 (52)
48 TIGR03581 EF_0839 conserved hy 40.4 57 0.0012 32.1 5.3 66 445-523 145-210 (236)
49 PRK10858 nitrogen regulatory p 40.0 26 0.00057 30.7 2.8 40 419-459 57-98 (112)
50 TIGR00178 monomer_idh isocitra 36.8 3.1E+02 0.0067 31.1 10.7 141 102-259 308-460 (741)
51 PRK10665 nitrogen regulatory p 33.8 38 0.00082 29.7 2.8 41 418-459 56-98 (112)
52 PF00076 RRM_1: RNA recognitio 33.3 85 0.0018 23.4 4.5 38 265-302 22-59 (70)
53 COG4981 Enoyl reductase domain 31.9 64 0.0014 35.8 4.6 34 93-128 149-182 (717)
54 PF14259 RRM_6: RNA recognitio 26.3 2.1E+02 0.0046 21.5 5.7 38 265-302 22-59 (70)
55 COG0347 GlnK Nitrogen regulato 23.6 79 0.0017 27.8 2.9 42 418-459 56-98 (112)
56 cd07033 TPP_PYR_DXS_TK_like Py 23.3 1.1E+02 0.0024 28.0 4.1 29 97-128 125-153 (156)
57 PF01456 Mucin: Mucin-like gly 20.2 32 0.00069 31.0 -0.2 14 18-32 14-27 (143)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=2.9e-88 Score=728.22 Aligned_cols=480 Identities=68% Similarity=1.089 Sum_probs=441.1
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCCChHHHHccC--CCCcEEcChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHH
Q 042782 36 LLSMASKLLLTFAICRLIVTVGLTMDPTELLRLG--VYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVK 113 (527)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~v~~d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~ 113 (527)
...+++++++++++++++...+.+.....+.... +.+.+.+|+.++..|++||++.++..|.+|++|+|++||+++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr 82 (525)
T PLN02441 3 SLMLSLRLLLILFLSSLTSSVGLCSSPSSLLPKLLSLDGHLSFDPVSTASASKDFGNLVHSLPAAVLYPSSVEDIASLVR 82 (525)
T ss_pred chHHHHHHHHHHHHHHhhhccCcccCcccccccccccCceEEeCHHHHHHHhcCcccccCCCCCEEEeCCCHHHHHHHHH
Confidence 3455688999999999999888876666443333 48999999999999999999999999999999999999999999
Q ss_pred HHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhC
Q 042782 114 AAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEH 193 (527)
Q Consensus 114 ~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~ 193 (527)
+|++ +.++++|++||+|||+.|++.+.+|++|||++||++ +.++ .+++++.+..+|+|+||++|.++++++.++
T Consensus 83 ~A~~-~~~~~~V~~rGgGHS~~G~a~~~~GivIdms~Ln~i--~~~~---~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~ 156 (525)
T PLN02441 83 AAYG-SSSPLTVAARGHGHSLNGQAQAPGGVVVDMRSLRGG--VRGP---PVIVVSGDGPYVDVSGGELWIDVLKATLKH 156 (525)
T ss_pred HHhh-ccCCceEEEECCCcCCCCCccCCCeEEEECCCCCCc--CccC---ceEEEcCCCCEEEEcCCCCHHHHHHHHHHC
Confidence 9973 227999999999999999999878999999999981 1110 136788888999999999999999999999
Q ss_pred CCCCCCcCCCccccccccccCCcccCCccccCCccCcEeEEEEEeCCCcEEEcCCCCCcchhhhhhcCCCCeEEEEeEEE
Q 042782 194 GLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGLGQFGIITRARI 273 (527)
Q Consensus 194 Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~~~~dL~~~~~Gs~G~lGIIt~atl 273 (527)
|++|++++++..+||||+++|+|+|+++++||.+.|||+++|||+++|++++|++.+|+||||+++||+|+|||||++||
T Consensus 157 GlaP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~GglG~fGIIT~atl 236 (525)
T PLN02441 157 GLAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGLGQFGIITRARI 236 (525)
T ss_pred CCccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCCCCcEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCceEEEEEEEeCCHHHHHHHHHHHHHcCCCCCCchhhhcccchhcc-hhhhhhccccccCCCCCcccccCCCCCc
Q 042782 274 SLEPAPKRVRWIRVLYSDFSTFTRDQEYLISLHELPASQKFDYVEGFVIVD-EGLINNWRSSFFSPRNPVKITSLGTDGG 352 (527)
Q Consensus 274 ~l~p~p~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~p~~~e~ld~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 352 (527)
|++|+|+.++|+.+.|.++++++++++.+++. ..+..+||+|++.+.+ .+.++.|++++|.++++.+...++++++
T Consensus 237 rL~Pap~~v~~~~~~y~~~~~~~~d~~~li~~---~~~~~~d~veg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (525)
T PLN02441 237 ALEPAPKRVRWIRVLYSDFSTFTRDQERLISR---PPENSFDYVEGFVIVNRNGLINNWRSSFFSPSDPVRASSLPSDGG 313 (525)
T ss_pred EEEecCCceEEEEEEcCCHHHHHHHHHHHHhc---CCCCCcceEeEEEEeCCCCceeeeecccCCccccchhhccccCCc
Confidence 99999999999999999999999999999872 2445799999999987 4788899998999999988888888889
Q ss_pred eEEEEEEeecCCCCChhhHHHHHHHHHHHhhhcCCceeeccchhhhhhhhhhhcccHHHHhhhhcCCCcceecccCcccH
Q 042782 353 VLYCLEITKNYDESTADTTDQEVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSKGLWEVPHPWLNLFIPKSRI 432 (527)
Q Consensus 353 ~~llle~~~~~~~~~~~~~~~~~~~ll~~l~~~~g~~~~~d~~~~~~~~~v~~~~~~~~~~~lW~~r~~~~dv~VP~s~l 432 (527)
++||||+++||++.+++.++++++.+++.|++.++..+..|++|.+|++|++..+..+++.++|++||||+|++||.|+|
T Consensus 314 ~~y~le~~~~~~~~~~~~~~~~~~~ll~~L~~~~~~~~~~d~~y~~fl~rv~~~e~~lr~~G~W~~phPWlnlfvp~s~i 393 (525)
T PLN02441 314 VLYCLEVAKYYDEDTSDTVDQEVESLLKRLSFIPGLLFTTDVSYVDFLDRVHVEELKLRSKGLWEVPHPWLNLFVPKSRI 393 (525)
T ss_pred eEEEEEEEEeeCCCCccchhhHHHHHHhhcCCCCCCceecccCHHHHHHhhhhHHHHHhhcCCcCCCCchhheeCcHHHH
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccCCCceEEeeCCCcccccccccCCChhhHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHc
Q 042782 433 ADFDKGVFKGILGNKTGGPILIYPMNKHKWDNRSSVVTPDEDVFYLVAFLRSALDNGEEMQSLEYLNHQNRQILKFCDEA 512 (527)
Q Consensus 433 ~~~~~~v~~~l~gh~g~G~ih~~p~~~~~~~~~~~~~~p~~~v~~~v~~l~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~ 512 (527)
.+|.+++++.|+.+..+|++++||+++.+|+.+++.++|+|++||+|+.|++++|+ ++++++|++||++|+++|+++
T Consensus 394 ~~f~~~v~~~i~~~~~~G~~liyP~~~~~~~~~~s~~~P~~~~~y~v~~l~~~~p~---~~~~~~~~~~n~~i~~~~~~~ 470 (525)
T PLN02441 394 ADFDDGVFKGILLDGTNGPILVYPLNRSKWDNRTSAVIPDEDIFYLVALLRSALPS---GDDLEHLLAQNKEILRFCEKA 470 (525)
T ss_pred HHHHHHHHhhcccccCCCeEEEEecccccCCCCCccccCCCCeEEEEEEcCCCCCC---cccHHHHHHHHHHHHHHHHHc
Confidence 99999999999987777999999999999999999999999999999999999983 447999999999999999999
Q ss_pred CCCceeeCCCCCCCC
Q 042782 513 GIKAKQYLPHYTTQE 527 (527)
Q Consensus 513 ~~~~k~yl~~~~~~~ 527 (527)
|+|+|||||||+|++
T Consensus 471 g~~~k~Yl~~~~~~~ 485 (525)
T PLN02441 471 GIGVKQYLPHYTTQE 485 (525)
T ss_pred CCceEEcCCCCCCHH
Confidence 999999999999875
No 2
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=3.8e-80 Score=629.82 Aligned_cols=420 Identities=56% Similarity=0.888 Sum_probs=392.1
Q ss_pred cCCCCcEEcChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcC--CceEEEEcCCCCCCCCCcC-CCcE
Q 042782 68 LGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAH--GFTISARGHGHSINGQAQT-SNGV 144 (527)
Q Consensus 68 ~~~~~~v~~d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~--~i~v~~rG~G~s~~g~~~~-~~gv 144 (527)
..+.+.+.+++...+..++||+..++..|.+|++|+|++||++++|+|+. . ++||++||+|||+.||+.+ .+|+
T Consensus 36 ~~~~~~~~~~~~~~a~~s~dFg~~~~~~P~aVL~P~S~edVs~ilk~~~~---~~s~~pVaarG~GhSl~Gqa~a~~~Gv 112 (505)
T KOG1231|consen 36 NSLEGTLESDPSSVAHASTDFGNRTQLPPLAVLFPSSVEDVSKILKHCND---YGSNFPVAARGGGHSLEGQALATRGGV 112 (505)
T ss_pred ccccceeeccchhhhhhhhhccccCCCCCeeEEcCCCHHHHHHHHHHHhc---cCCcceeeccCCcccccCccccCCCCe
Confidence 34788899999999999999999999999999999999999999999998 6 8999999999999999998 8998
Q ss_pred EEEcCC---CCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCCc
Q 042782 145 VIQMSG---SRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQA 221 (527)
Q Consensus 145 vIdl~~---mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s 221 (527)
+|.|+. |++ +-.+...+.+|+|+||..|.++++++.++||+|..|+++++.||||++||+|+|+++
T Consensus 113 vV~m~~~~~~~~-----------~~~~~~~~~yvdV~~g~~Widll~~t~e~GL~p~swtDyl~ltVGGtlsnagiggqa 181 (505)
T KOG1231|consen 113 VVCMDSSLLMKD-----------VPVLVVDDLYVDVSAGTLWIDLLDYTLEYGLSPFSWTDYLPLTVGGTLSNAGIGGQA 181 (505)
T ss_pred EEEEehhhccCC-----------CceeecccceEEeeCChhHHHHHHHHHHcCCCccCcCCccceeecceeccCccccce
Confidence 887764 444 234555568999999999999999999999999999999999999999999999999
Q ss_pred cccCCccCcEeEEEEEeCCCcEEEcCCCCCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHH
Q 042782 222 FHQGPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEY 301 (527)
Q Consensus 222 ~~~G~~~d~V~~levV~~~G~v~~~~~~~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~ 301 (527)
+|||++.+||++|+||+++|++++|+++.|++||++++||+|+||||||||++|+|+|++ +++.
T Consensus 182 fRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~lf~~vlGglGqfGIITrArI~le~aP~~----------------dQe~ 245 (505)
T KOG1231|consen 182 FRYGPQISNVIELDVVTGKGEIVTCSKRANSNLFFLVLGGLGQFGIITRARIKLEPAPKR----------------DQER 245 (505)
T ss_pred eeccchhhceEEEEEEcCCCcEEecccccCceeeeeeeccCcceeeEEEEEEEeccCCcc----------------chHH
Confidence 999999999999999999999999999999999999999999999999999999999976 6667
Q ss_pred HHHcCCCCCCchhhhcccchhcch-hhhhhccccccCCCCCcccccCCCCCceEEEEEEeecCCCCChhhHHHHHHHHHH
Q 042782 302 LISLHELPASQKFDYVEGFVIVDE-GLINNWRSSFFSPRNPVKITSLGTDGGVLYCLEITKNYDESTADTTDQEVESLLK 380 (527)
Q Consensus 302 l~~~~~~~~p~~~e~ld~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~llle~~~~~~~~~~~~~~~~~~~ll~ 380 (527)
+++..+ .|++++++.++++ +++++|++++|.+.++.+...+..++...||+|+++||+..+.+.+.++++.+.+
T Consensus 246 lis~~~-----~fd~veg~~~~~~~gl~~n~r~s~f~l~D~~~i~~~~~~~~~~yclev~ky~d~~e~pti~~e~~~l~~ 320 (505)
T KOG1231|consen 246 LISVCG-----SFDTVEGAAIVARNGLQSNIRVSRFELLDEVQIAAINSDHSTNYCLEVAKYYDLTEAPTLFQEIGGLSE 320 (505)
T ss_pred hhhhhc-----CCcchhhhhhhhhccccccceeeccccCcHHHHHHHHhcCCeeeeeehhhccCcccCchHHHHHhccch
Confidence 777543 5899999999985 8999999999999888888888888889999999999998888899999999999
Q ss_pred HhhhcCCceeeccchhhhhhhhhhhcccHHHHhhhhcCCCcceecccCcccHHHHHHHHHHhhcCccCCCceEEeeCCCc
Q 042782 381 KLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSKGLWEVPHPWLNLFIPKSRIADFDKGVFKGILGNKTGGPILIYPMNKH 460 (527)
Q Consensus 381 ~l~~~~g~~~~~d~~~~~~~~~v~~~~~~~~~~~lW~~r~~~~dv~VP~s~l~~~~~~v~~~l~gh~g~G~ih~~p~~~~ 460 (527)
.+.+.++..+..|++|.+|++|++.+++++++++||++||||++++||++++.+|.+.++..++.....|+.++||+++.
T Consensus 321 ~l~~~~~~~~~~~v~y~~fldrv~~ae~klrskgLWevphpWlnL~vpks~i~~fa~gv~~dIl~~~s~g~~liyptnk~ 400 (505)
T KOG1231|consen 321 KLNYAPTFIVEQDVQYHDFLDRVHFAEDKLRSKGLWEVPHPWLNLAVPKSRISDFARGVFTDILVPNSSGPVLIYPTNKD 400 (505)
T ss_pred hhhccchhhhhhhhHHHHhhhHhhhcccchhhcccccCCCchheeecccccchhhhhhhccceeeccCCCceEEeccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999988778899999999988
Q ss_pred -ccccccccCCC--hhhHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHcCCCceeeCCCCCCCC
Q 042782 461 -KWDNRSSVVTP--DEDVFYLVAFLRSALDNGEEMQSLEYLNHQNRQILKFCDEAGIKAKQYLPHYTTQE 527 (527)
Q Consensus 461 -~~~~~~~~~~p--~~~v~~~v~~l~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~k~yl~~~~~~~ 527 (527)
+|.++++++.| +|++||+|+.|+++ +++.+++++++|+||++||.+||++.|||||||.+||
T Consensus 401 ~kw~~~~sav~ph~~e~vFy~v~~l~s~-----~~~~~e~~~~~n~riv~fc~~ag~~~keyl~~~~~~e 465 (505)
T KOG1231|consen 401 LKWSNRLSAVTPHAGEGVFYLVILLRSS-----GKEEHEELEQLNDRIVKFCLAAGTCTKEYLPHYGKRE 465 (505)
T ss_pred cchhhhhccccccCCCceEEEEEEecCC-----CchhHHHHHHHHHHHHHHHHHcCcChhhhcCCcccHH
Confidence 99999999999 89999999999994 6778999999999999999999999999999999986
No 3
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=2.4e-52 Score=452.84 Aligned_cols=400 Identities=15% Similarity=0.185 Sum_probs=321.7
Q ss_pred CChHHHHccCCCCcEEcChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCc
Q 042782 60 MDPTELLRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQ 139 (527)
Q Consensus 60 ~~~~~l~~~~~~~~v~~d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~ 139 (527)
..+++|+++++...|.+|+..+..|++|++..++..|.+|++|+|++||+++|++|++ +++||++||+|||+.|++.
T Consensus 20 ~~~~~l~~~~g~~~v~~~~~~~~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~---~~ipv~~rG~Gt~~~gg~~ 96 (499)
T PRK11230 20 SLLMALREHLPGLEILHTDEELIPYECDGLSAYRTRPLLVVLPKQMEQVQALLAVCHR---LRVPVVARGAGTGLSGGAL 96 (499)
T ss_pred HHHHHHHHhcCcceEEcCHHHHHHhccCcccccCCCCCEEEeeCCHHHHHHHHHHHHH---cCCeEEEECCCcCcCCCcc
Confidence 3567899999999999999999999999877788999999999999999999999999 9999999999999999887
Q ss_pred C-CCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCC-CCCcCCCccccccccccCCcc
Q 042782 140 T-SNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLA-PKSWTDYLYLSVGGTLSNAGI 217 (527)
Q Consensus 140 ~-~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~-p~~~~~~~~~TVGG~ia~~g~ 217 (527)
+ .+|++|||++||+ |+++|+++.+++||||+++.+|.+++.++|++ |+++++...+||||+++++++
T Consensus 97 ~~~~gividl~~ln~-----------I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nag 165 (499)
T PRK11230 97 PLEKGVLLVMARFNR-----------ILDINPVGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAG 165 (499)
T ss_pred cCCCcEEEEcccCCC-----------ceEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCC
Confidence 6 5789999999999 68999999999999999999999999999996 778877778999999999888
Q ss_pred cCCccccCCccCcEeEEEEEeCCCcEEEcCCC----CCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHH
Q 042782 218 SGQAFHQGPQITNVHELDVVTGKGELLTCSEE----QNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFS 293 (527)
Q Consensus 218 G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~----~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~ 293 (527)
|.++.+||.++|+|+++|||++||++++++.. .++||+++++||+|+|||||++|||++|.|+...++.+.|++++
T Consensus 166 G~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~ 245 (499)
T PRK11230 166 GVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVE 245 (499)
T ss_pred CccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHH
Confidence 99999999999999999999999999999854 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCchhhhcccchhcchhhhhhccccccCCCCCcccccCCCCCceEEEEEEeecCCCCChhhHHH
Q 042782 294 TFTRDQEYLISLHELPASQKFDYVEGFVIVDEGLINNWRSSFFSPRNPVKITSLGTDGGVLYCLEITKNYDESTADTTDQ 373 (527)
Q Consensus 294 ~~~~~~~~l~~~~~~~~p~~~e~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~llle~~~~~~~~~~~~~~~ 373 (527)
++.+++..+.+.+ ..|.++|++|...+... .. +.. ..+|.+..+++++|+ ++.+ +.++.
T Consensus 246 ~a~~~~~~~~~~~--~~p~~~el~d~~~~~~~---~~-----~~~------~~~p~~~~~~ll~e~----~g~~-~~v~~ 304 (499)
T PRK11230 246 KAGLAVGDIIAAG--IIPGGLEMMDNLSIRAA---ED-----FIH------AGYPVDAEAILLCEL----DGVE-SDVQE 304 (499)
T ss_pred HHHHHHHHHHhcC--CCcEEEEeeCHHHHHHH---HH-----hcC------CCCCCCcceEEEEEe----cCCc-hHHHH
Confidence 9999999988763 57899999998765321 10 111 123334457888895 5543 45667
Q ss_pred HHHHHHHHhhhcCCceeeccchhhhhhhhhhhcccHHHHhhhhcCCCc-------------ceecccCcccHHHHHHHHH
Q 042782 374 EVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSKGLWEVPHP-------------WLNLFIPKSRIADFDKGVF 440 (527)
Q Consensus 374 ~~~~ll~~l~~~~g~~~~~d~~~~~~~~~v~~~~~~~~~~~lW~~r~~-------------~~dv~VP~s~l~~~~~~v~ 440 (527)
+++.+.+.+...++.. +..++++.+...+|..|+. ..|++||+++++++++.+
T Consensus 305 ~~~~l~~~~~~~g~~~-------------~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~dv~vP~~~l~~~~~~~- 370 (499)
T PRK11230 305 DCERVNDILLKAGATD-------------VRLAQDEAERVRFWAGRKNAFPAVGRISPDYYCMDGTIPRRELPGVLEGI- 370 (499)
T ss_pred HHHHHHHHHHhcCCce-------------EEEeCCHHHHHHHHHHHHhhHHHHHhhCCCeeEEeecCChHHHHHHHHHH-
Confidence 7788877776443211 1123444455556766641 249999999999999998
Q ss_pred Hhhc----------CccCCCceEEeeCCCccc---ccccccCCChhhHHHHHHHhCCCCCCC--cchhhHHHHHHH-HHH
Q 042782 441 KGIL----------GNKTGGPILIYPMNKHKW---DNRSSVVTPDEDVFYLVAFLRSALDNG--EEMQSLEYLNHQ-NRQ 504 (527)
Q Consensus 441 ~~l~----------gh~g~G~ih~~p~~~~~~---~~~~~~~~p~~~v~~~v~~l~~~~~~~--~~~~~~~~~~~~-n~~ 504 (527)
+++. +|+|+||+|++++.+.+. .++...+. ++++..+..++|+++.+ .|....+.+..+ +..
T Consensus 371 ~~~~~~~~~~~~~~gH~GdGn~H~~i~~~~~~~~~~~~~~~~~--~~l~~~~~~~GG~is~EHGiG~~k~~~l~~~~g~~ 448 (499)
T PRK11230 371 ARLSQQYGLRVANVFHAGDGNMHPLILFDANEPGELERAEALG--GKILELCVEVGGSITGEHGVGREKINQMCAQFNSD 448 (499)
T ss_pred HHHHHHcCCeEEEEEEeCCCcceeeecCCCCCHHHHHHHHHHH--HHHHHHHHHcCCeEeeeccCchhhHHHHHHhcCHH
Confidence 4554 799999999998643221 12333343 78999999999999886 344444555444 334
Q ss_pred HHHHHH
Q 042782 505 ILKFCD 510 (527)
Q Consensus 505 ~~~~~~ 510 (527)
.++.++
T Consensus 449 ~~~~m~ 454 (499)
T PRK11230 449 EITLFH 454 (499)
T ss_pred HHHHHH
Confidence 444443
No 4
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=1.3e-52 Score=457.64 Aligned_cols=393 Identities=17% Similarity=0.176 Sum_probs=310.2
Q ss_pred hHHHHccCCCCcEEcChhhHHHhhhccCCCCC--CCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCc
Q 042782 62 PTELLRLGVYGQLSVDPFDVQTASLDFGMLSR--AEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQ 139 (527)
Q Consensus 62 ~~~l~~~~~~~~v~~d~~~~~~~~~d~~~~~~--~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~ 139 (527)
+++|++++. +.|.+|+..+..|++||+..+. ..|.+|++|+|++||+++|++|++ +++||++||||||+.|++.
T Consensus 99 ~~~L~~~l~-~~v~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~a~~---~~ipv~prGgGts~~G~~~ 174 (555)
T PLN02805 99 IDELKAILQ-DNMTLDYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKSCNK---YKVPIVPYGGATSIEGHTL 174 (555)
T ss_pred HHHHHHhcC-CceecCHHHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHHHHH---CCCcEEEECCCCCCCCCcc
Confidence 456777766 5599999999999999864333 579999999999999999999999 9999999999999999987
Q ss_pred C-CCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCC-CCCcCCCccccccccccCCcc
Q 042782 140 T-SNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLA-PKSWTDYLYLSVGGTLSNAGI 217 (527)
Q Consensus 140 ~-~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~-p~~~~~~~~~TVGG~ia~~g~ 217 (527)
+ .+|++|||++||+ |+++|+++.+++||||+++.+|++++.++|++ |+++. ..+||||+++++++
T Consensus 175 ~~~ggivIdl~~mn~-----------I~~id~~~~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~--~~~TIGG~ia~n~~ 241 (555)
T PLN02805 175 APHGGVCIDMSLMKS-----------VKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPG--PGATIGGMCATRCS 241 (555)
T ss_pred CCCCEEEEEccCCCC-----------eEEEeCCCCEEEEeCCcCHHHHHHHHHHcCCEeCCCCc--cccChhhHhhCCCc
Confidence 6 5799999999999 68899999999999999999999999999996 55544 35899999999998
Q ss_pred cCCccccCCccCcEeEEEEEeCCCcEEEcCCC-----CCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCH
Q 042782 218 SGQAFHQGPQITNVHELDVVTGKGELLTCSEE-----QNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDF 292 (527)
Q Consensus 218 G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~-----~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~ 292 (527)
|..+.+||.++|+|+++|||++||++++++.. .++||+|+++||+|+|||||+++||+.|.|+......+.|+|+
T Consensus 242 G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~ 321 (555)
T PLN02805 242 GSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTI 321 (555)
T ss_pred ccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCH
Confidence 99999999999999999999999999987532 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhhcccchhcchhhhhhccccccCCCCCcccccCCCCCceEEEEEEeecCCCCChhhHH
Q 042782 293 STFTRDQEYLISLHELPASQKFDYVEGFVIVDEGLINNWRSSFFSPRNPVKITSLGTDGGVLYCLEITKNYDESTADTTD 372 (527)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~p~~~e~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~llle~~~~~~~~~~~~~~ 372 (527)
+++.+++..++.. + +.|+++|+||...+.. ++. +.. ..+|. .+++++|+ ++.+ +.++
T Consensus 322 ~~a~~av~~i~~~-g-~~psa~ElmD~~~~~~---~~~-----~~~------~~~p~--~~~Ll~e~----~g~~-~~~~ 378 (555)
T PLN02805 322 KDAADVAIATMLS-G-IQVSRVELLDEVQIRA---INM-----ANG------KNLPE--APTLMFEF----IGTE-AYAR 378 (555)
T ss_pred HHHHHHHHHHHhC-C-CCcEEEEEECHHHHHH---HHH-----hcC------CCCCc--ceEEEEEE----ecCc-HHHH
Confidence 9999999988775 3 6899999999876532 121 100 12332 47888995 5533 3566
Q ss_pred HHHHHHHHHhhhcCCceeeccchhhhhhhhhhhcccHHHHhhhhcCCCc---------------ceecccCcccHHHHHH
Q 042782 373 QEVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSKGLWEVPHP---------------WLNLFIPKSRIADFDK 437 (527)
Q Consensus 373 ~~~~~ll~~l~~~~g~~~~~d~~~~~~~~~v~~~~~~~~~~~lW~~r~~---------------~~dv~VP~s~l~~~~~ 437 (527)
++.+.+.+.+...++.. +..+.++.++..+|.+|+. +.|++||+++|++|++
T Consensus 379 ~~~~~~~~i~~~~g~~~-------------~~~a~~~~e~~~lW~~R~~~~~~~~~~~~~~~~~~~DvaVP~s~L~e~i~ 445 (555)
T PLN02805 379 EQTLIVQKIASKHNGSD-------------FVFAEEPEAKKELWKIRKEALWACFAMEPKYEAMITDVCVPLSHLAELIS 445 (555)
T ss_pred HHHHHHHHHHHhCCCce-------------EEEeCCHHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEHHHHHHHHH
Confidence 66666666655433211 1133445555666666651 3599999999999999
Q ss_pred HHHHhhc----------CccCCCceEEeeCCCcc---cccccccCCChhhHHHHHHHhCCCCCCC--cchhhHHHHHHH-
Q 042782 438 GVFKGIL----------GNKTGGPILIYPMNKHK---WDNRSSVVTPDEDVFYLVAFLRSALDNG--EEMQSLEYLNHQ- 501 (527)
Q Consensus 438 ~v~~~l~----------gh~g~G~ih~~p~~~~~---~~~~~~~~~p~~~v~~~v~~l~~~~~~~--~~~~~~~~~~~~- 501 (527)
++ ++++ ||+||||+|++++.+.+ ..++...+ .+++++++..++|+++++ .|..+.+.|..+
T Consensus 446 ~~-~~~~~~~~~~~~~~gHaGdGnlH~~i~~~~~~~~~~~~~~~~--~~~i~~~~~~~gGsiSgEHGiG~~k~~~l~~~~ 522 (555)
T PLN02805 446 RS-KKELDASPLVCTVIAHAGDGNFHTIILFDPSQEDQRREAERL--NHFMVHTALSMEGTCTGEHGVGTGKMKYLEKEL 522 (555)
T ss_pred HH-HHHHHHcCCeEEEEEEcCCCcEEEEeccCCCCHHHHHHHHHH--HHHHHHHHHHcCCeEeEECCCChhHHHHHHHhc
Confidence 98 4554 89999999999875432 11222334 388999999999999986 556666666655
Q ss_pred HHHHHHHHH
Q 042782 502 NRQILKFCD 510 (527)
Q Consensus 502 n~~~~~~~~ 510 (527)
+...+++++
T Consensus 523 g~~~~~lm~ 531 (555)
T PLN02805 523 GIEALQTMK 531 (555)
T ss_pred CHHHHHHHH
Confidence 334454444
No 5
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=1e-47 Score=383.52 Aligned_cols=386 Identities=15% Similarity=0.193 Sum_probs=322.8
Q ss_pred CChHHHHccCCCCcEEcChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCc
Q 042782 60 MDPTELLRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQ 139 (527)
Q Consensus 60 ~~~~~l~~~~~~~~v~~d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~ 139 (527)
++++.++++++...++++++++..|.+||-+.|++....|++|+|+++|++|+++|++ +++.|+|+||.|++.|+++
T Consensus 54 ~Dl~~Fk~iLg~d~~~~~~edL~~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~---~kLAVVPQGGNTgLVGgSV 130 (511)
T KOG1232|consen 54 KDLAYFKSILGKDEVSTDKEDLENFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCND---RKLAVVPQGGNTGLVGGSV 130 (511)
T ss_pred HHHHHHHHHhcccccccChHHHhhhhhHHHHhccCCceEEecCCCHHHHHHHHHhhcc---ccEEEecCCCCcccccCcc
Confidence 7788999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred C-CCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCC-CCCcCCCccccccccccCCcc
Q 042782 140 T-SNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLA-PKSWTDYLYLSVGGTLSNAGI 217 (527)
Q Consensus 140 ~-~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~-p~~~~~~~~~TVGG~ia~~g~ 217 (527)
| .+.||++|.+||+ +..+|+-.++++++||+.++++.+++.++|++ |.++++.++|.|||+++|+++
T Consensus 131 PvfDEiVlsl~~mNK-----------i~sfDevsGil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAG 199 (511)
T KOG1232|consen 131 PVFDEIVLSLGLMNK-----------ILSFDEVSGILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAG 199 (511)
T ss_pred cchHHHhhhhhhhcc-----------ccccccccceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCC
Confidence 9 7899999999999 78999999999999999999999999999984 999999999999999998888
Q ss_pred cCCccccCCccCcEeEEEEEeCCCcEEEcCCC-----CCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCH
Q 042782 218 SGQAFHQGPQITNVHELDVVTGKGELLTCSEE-----QNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDF 292 (527)
Q Consensus 218 G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~-----~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~ 292 (527)
|.+-.|||+..-+|+++|+|+|+|+++..... .++|+.++|+||+|++||||.+++-+.|.|+.+...++..+++
T Consensus 200 GlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi~sf 279 (511)
T KOG1232|consen 200 GLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGIESF 279 (511)
T ss_pred ceEEEEecccccceeeeEEEcCCCchhhhhhhhcccCccccchhheecCCceeeEEeeEEEeecCCCcceeEEEEccccH
Confidence 99999999999999999999999999976432 5689999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhhcccchhcchhhhhhccccccCCCCCcccccCCCCCceEEEEEEeecCCCCChhhHH
Q 042782 293 STFTRDQEYLISLHELPASQKFDYVEGFVIVDEGLINNWRSSFFSPRNPVKITSLGTDGGVLYCLEITKNYDESTADTTD 372 (527)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~p~~~e~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~llle~~~~~~~~~~~~~~ 372 (527)
++..+......+ ..-|.+.+|+++|+..++..... + . .-..++..+.+.+++||. .|++++..+
T Consensus 280 ~~v~k~fv~Aks-------~L~EILSafElmD~~s~~~~~~~-l-~---~l~~pl~~~~pFyiLiET----sGSn~dhD~ 343 (511)
T KOG1232|consen 280 DDVQKVFVEAKS-------NLTEILSAFELMDNASMELVLEY-L-K---DLHFPLEDEHPFYILIET----SGSNKDHDE 343 (511)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHhhcchHHHHHHHH-h-c---cCCCCccCCCceEEEEEe----cCCCccccH
Confidence 877665443322 25677777777776444432211 1 1 011345555678899996 566777788
Q ss_pred HHHHHHHHHhhhcCCceeeccchhhhhhhhhhhcccHHHHhhhhcCCCc------------ceecccCcccHHHHHHHHH
Q 042782 373 QEVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSKGLWEVPHP------------WLNLFIPKSRIADFDKGVF 440 (527)
Q Consensus 373 ~~~~~ll~~l~~~~g~~~~~d~~~~~~~~~v~~~~~~~~~~~lW~~r~~------------~~dv~VP~s~l~~~~~~v~ 440 (527)
++++++++.+.. .+.+ .|.+ .++++.+...+|.+|+. .+|+++|.+.+.+.++.+.
T Consensus 344 eKl~afl~d~le-k~lI----------sDGv-~a~d~~~~~~lW~~Re~ip~a~~~~g~vyKyDvSLpL~d~Y~lvn~~~ 411 (511)
T KOG1232|consen 344 EKLTAFLEDCLE-KGLI----------SDGV-LAQDEAEAQKLWKIRESIPEALQKAGGVYKYDVSLPLEDLYNLVNVMK 411 (511)
T ss_pred HHHHHHHHHhhh-hccc----------ccce-ecCCHHHHHHHHHHHhccHHHHHhcCCEEEeeccccHHHHHHHHHHHH
Confidence 899999888753 3443 1233 67889999999999984 3699999999999998775
Q ss_pred Hhhc-----------CccCCCceEEeeCCCcccccccccCCChhhHHHHHHHhCCCCCCC
Q 042782 441 KGIL-----------GNKTGGPILIYPMNKHKWDNRSSVVTPDEDVFYLVAFLRSALDNG 489 (527)
Q Consensus 441 ~~l~-----------gh~g~G~ih~~p~~~~~~~~~~~~~~p~~~v~~~v~~l~~~~~~~ 489 (527)
+++. ||.||||+|++.... ++.++..... +.-+|+.+...+|++|-+
T Consensus 412 eRl~~~~l~~d~~gyGHlGDgNlHLNia~~-efn~~iek~l-ePfvYE~vs~~~GSISAE 469 (511)
T KOG1232|consen 412 ERLGEAALVGDIVGYGHLGDGNLHLNIAVR-EFNKEIEKLL-EPFVYEWVSKHKGSISAE 469 (511)
T ss_pred HhhhhhhhhhcccccccccCCceeEeeeHH-HHhHHHHHhh-hhHHHHHHHhcCCceecc
Confidence 4442 799999999997642 3333433332 478899999999999865
No 6
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=1.3e-46 Score=400.68 Aligned_cols=340 Identities=19% Similarity=0.289 Sum_probs=273.4
Q ss_pred EEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcC-CCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEE
Q 042782 99 VLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQT-SNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDV 177 (527)
Q Consensus 99 Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~-~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V 177 (527)
|++|+|++||+++|++|++ +++||++||+|||+.|++.+ .++++|||++||+ |+++|+++.+++|
T Consensus 1 Vv~P~s~eev~~iv~~a~~---~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~-----------i~~id~~~~~v~v 66 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHE---HRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNK-----------ILEIDVVNLTAVV 66 (413)
T ss_pred CCCCCCHHHHHHHHHHHHH---cCCcEEEECCCCCCCCCccCCCCeEEEEhHHcCc-----------eeEEcCCCCEEEE
Confidence 5789999999999999999 99999999999999988876 4789999999999 6799999999999
Q ss_pred eCCccHHHHHHHHHhCCCC-CCCcCCCccccccccccCCcccCCccccCCccCcEeEEEEEeCCCcEEEcCCC-----CC
Q 042782 178 WGGELWIDVLRSTLEHGLA-PKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEE-----QN 251 (527)
Q Consensus 178 ~aGv~~~~l~~~l~~~Gl~-p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~-----~~ 251 (527)
|||+++.+|.+++.++|++ |+++++...+||||+++++++|.++.+||.++|+|++++||++||++++++.. .+
T Consensus 67 eaGv~~~~l~~~l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g 146 (413)
T TIGR00387 67 QPGVRNLELEQAVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAG 146 (413)
T ss_pred cCCccHHHHHHHHHHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCC
Confidence 9999999999999999997 66777777899999999988888999999999999999999999999998743 46
Q ss_pred cchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHHHHcCCCCCCchhhhcccchhcchhhhhhc
Q 042782 252 SGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYLISLHELPASQKFDYVEGFVIVDEGLINNW 331 (527)
Q Consensus 252 ~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~p~~~e~ld~~~~~~~~~~~~~ 331 (527)
+||+++++||+|+|||||+++|||+|.|+...++.+.|++++++.+++..+++. + ..|+++|++|...+.. +..
T Consensus 147 ~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~~-~-~~p~a~el~d~~~~~~---~~~- 220 (413)
T TIGR00387 147 YDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIAA-G-IIPAGMEFLDNLSIKA---VED- 220 (413)
T ss_pred CChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHhc-C-CCcEEEEccCHHHHHH---HHH-
Confidence 799999999999999999999999999999999999999999999999988776 3 6899999999876532 111
Q ss_pred cccccCCCCCcccccCCCCCceEEEEEEeecCCCCChhhHHHHHHHHHHHhhhcCCceeeccchhhhhhhhhhhcccHHH
Q 042782 332 RSSFFSPRNPVKITSLGTDGGVLYCLEITKNYDESTADTTDQEVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLR 411 (527)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~~~~~llle~~~~~~~~~~~~~~~~~~~ll~~l~~~~g~~~~~d~~~~~~~~~v~~~~~~~~ 411 (527)
+. ...+|.+..+++++|+ ++.+ ++++++++++.+.+...++... ..+.+..+
T Consensus 221 ----~~------~~~~p~~~~~~l~v~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 272 (413)
T TIGR00387 221 ----IS------GIGLPKDAGAILLVEI----DGVH-EAVERDEEKIEQICRKNGAVDV-------------QIAQDEEE 272 (413)
T ss_pred ----hc------CCCCCCCCceEEEEEe----cCCc-HHHHHHHHHHHHHHHhCCCceE-------------EEeCCHHH
Confidence 10 0124444457788884 5544 4567777888777764332110 01222333
Q ss_pred HhhhhcCCC-------------cceecccCcccHHHHHHHHHHhhc----------CccCCCceEEeeCCCcc---cccc
Q 042782 412 SKGLWEVPH-------------PWLNLFIPKSRIADFDKGVFKGIL----------GNKTGGPILIYPMNKHK---WDNR 465 (527)
Q Consensus 412 ~~~lW~~r~-------------~~~dv~VP~s~l~~~~~~v~~~l~----------gh~g~G~ih~~p~~~~~---~~~~ 465 (527)
...+|..|+ -+.|++||+++++++++.+. +++ +|+|+||+|+++..+.+ +.++
T Consensus 273 ~~~~W~~r~~~~~~~~~~~~~~~~~d~~vp~~~l~~~~~~~~-~~~~~~~~~~~~~gH~g~g~lh~~~~~~~~~~~~~~~ 351 (413)
T TIGR00387 273 RALLWAGRRNAFKAASKLSPLYLIEDGTVPRSKLPEALRGIA-DIARKYDFTIANFGHAGDGNLHPTILTDPEDKGEMER 351 (413)
T ss_pred HHHHHHHHHHhHHHHHhhCCCcceeEEecCHHHHHHHHHHHH-HHHHHcCCeEEEEEEecCCccccccCCCCCCHHHHHH
Confidence 444555443 24699999999999999984 543 89999999998764322 1123
Q ss_pred cccCCChhhHHHHHHHhCCCCCCC
Q 042782 466 SSVVTPDEDVFYLVAFLRSALDNG 489 (527)
Q Consensus 466 ~~~~~p~~~v~~~v~~l~~~~~~~ 489 (527)
...+. ++++..+..++|+++.+
T Consensus 352 ~~~~~--~~~~~~~~~~gG~is~e 373 (413)
T TIGR00387 352 VEEAG--GEIFELAIELGGTISGE 373 (413)
T ss_pred HHHHH--HHHHHHHHHcCCEEEEe
Confidence 33343 88999999999999986
No 7
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=100.00 E-value=4.2e-48 Score=384.55 Aligned_cols=245 Identities=69% Similarity=1.160 Sum_probs=202.9
Q ss_pred CceEEEEEEEeCCHHHHHHHHHHHHHcCCCCCCchhhhcccchhcch-hhhhhccccccCCCCCcccccCCC-CCceEEE
Q 042782 279 PKRVRWIRVLYSDFSTFTRDQEYLISLHELPASQKFDYVEGFVIVDE-GLINNWRSSFFSPRNPVKITSLGT-DGGVLYC 356 (527)
Q Consensus 279 p~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~p~~~e~ld~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~ll 356 (527)
|++++|+++.|.|+++++++++.|++.... ..+||+||++++++ ++.++|++++|.+++..+...+++ +++|+||
T Consensus 1 p~~vrw~r~~Y~df~~ft~DqE~Lis~~~~---~~~DYvEGfv~~n~~~~~~~w~s~~f~~~~~~~~~~l~~~~g~~lY~ 77 (281)
T PF09265_consen 1 PKRVRWIRLLYSDFATFTRDQERLISKPES---GAFDYVEGFVILNRQGLINNWRSSFFSPSDPARISSLVSENGGWLYC 77 (281)
T ss_dssp -SEEEEEEEEES-HHHHHHHHHHHHTCBTT---TS-SEEEEEEEECCGHCCCCHCCSSSSCCCHHHHHHCHCCT-SEEEE
T ss_pred CCceEEEEeeeccHHHHHhhHHHHhcCCCC---CCcceeceeeeecCCCCcCCccCCCCCcccccccccccccCCCEEEE
Confidence 789999999999999999999999987431 13999999999994 999999999999988887777866 7889999
Q ss_pred EEEeecCCCCChhhHHHHHHHHHHHhhhcCCceeeccchhhhhhhhhhhcccHHHHhhhhcCCCcceecccCcccHHHHH
Q 042782 357 LEITKNYDESTADTTDQEVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSKGLWEVPHPWLNLFIPKSRIADFD 436 (527)
Q Consensus 357 le~~~~~~~~~~~~~~~~~~~ll~~l~~~~g~~~~~d~~~~~~~~~v~~~~~~~~~~~lW~~r~~~~dv~VP~s~l~~~~ 436 (527)
||+++||+..+.++++++++.+++.|++.++..+..|++|.+|++||+..+..++++|+|+++|||+|++||.|+|++|+
T Consensus 78 LE~a~~y~~~~~~~vd~~~~~LL~~L~~~~~~~f~~DvsY~dFL~Rv~~~E~~Lr~~G~WdvPHPWlnlfvP~s~i~dF~ 157 (281)
T PF09265_consen 78 LEVAKYYDPPTAPDVDQEVEALLAGLSFIPGLAFTEDVSYVDFLDRVHSSEEKLRSKGLWDVPHPWLNLFVPKSRIEDFD 157 (281)
T ss_dssp EEEEEEE-TTTHHHHHHHHHHHHTT--S-TT-EEEEEEEHHHHHTCCHHHHHHHHHCTTSSS----EEEEEEHHHHHHHH
T ss_pred EEEEEecCCccchhhHHHHHHHHhhcCCCcCceeeccccHHHHHHHhhhHHHHHHhcCCccccCcceeeecchHHHHHHH
Confidence 99999999888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccCC-CceEEeeCCCcccccccccCCChhhHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHcCCC
Q 042782 437 KGVFKGILGNKTG-GPILIYPMNKHKWDNRSSVVTPDEDVFYLVAFLRSALDNGEEMQSLEYLNHQNRQILKFCDEAGIK 515 (527)
Q Consensus 437 ~~v~~~l~gh~g~-G~ih~~p~~~~~~~~~~~~~~p~~~v~~~v~~l~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 515 (527)
++++++|+.+.+. |+|++||+++++|+.+++.+.|++++||+|+.|++++|+ .+++++++|++||++|+++|+++|||
T Consensus 158 ~~V~~~il~~~~~~GpiLvYP~~~~kwd~~~s~v~Pde~vfylv~lLrsa~P~-~~~~~l~~l~~qN~~il~~c~~agi~ 236 (281)
T PF09265_consen 158 RGVFKGILKDDGNSGPILVYPLNRSKWDTRMSAVIPDEDVFYLVALLRSADPS-DGPDDLERLLEQNRRILEFCRKAGIG 236 (281)
T ss_dssp HHCCCCCTTTS-S-SEEEEEEEEGGGS-TTSS----SSSEEEEEEEEE---TT-SSCCHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHhhccCCCCceEEEEEecccccCCCCcccCCCCCeEEEEEEeCCCCCC-CCchhHHHHHHHHHHHHHHHHHcCCc
Confidence 9999999887776 999999999999999999999999999999999999887 47789999999999999999999999
Q ss_pred ceeeCCCCCCCC
Q 042782 516 AKQYLPHYTTQE 527 (527)
Q Consensus 516 ~k~yl~~~~~~~ 527 (527)
+|||||||.|+|
T Consensus 237 ~k~Yl~~~~t~~ 248 (281)
T PF09265_consen 237 GKQYLPHYTTQE 248 (281)
T ss_dssp EEESS---SSHH
T ss_pred eEECCCCCCCHH
Confidence 999999999864
No 8
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=3.3e-42 Score=370.93 Aligned_cols=376 Identities=20% Similarity=0.252 Sum_probs=288.1
Q ss_pred HccCCCCcEEcChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEE
Q 042782 66 LRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVV 145 (527)
Q Consensus 66 ~~~~~~~~v~~d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvv 145 (527)
..+.....+.+++.....|..||+ .++..|.+|+.|+|++||++++++|++ +++||+|||+|||+.|++.+.+||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~p~~v~~p~s~~eV~~iv~~a~~---~~~~v~prG~gts~~g~~~~~~gvv 78 (459)
T COG0277 3 KRILGELNVLTDPADRAAYRTDAS-VYRGLPLAVVFPKSEEEVAAILRLANE---NGIPVVPRGGGTSLSGGAVPDGGVV 78 (459)
T ss_pred hHhcCccceecCHHHHhhccCCcc-hhcCCCCEEEccCCHHHHHHHHHHHHH---cCCeEEEECCCCCccccccCCCcEE
Confidence 344555568899999999999999 688899999999999999999999999 9999999999999999998844999
Q ss_pred EEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCC-CCCcCCCccccccccccCCcccCCcccc
Q 042782 146 IQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLA-PKSWTDYLYLSVGGTLSNAGISGQAFHQ 224 (527)
Q Consensus 146 Idl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~-p~~~~~~~~~TVGG~ia~~g~G~~s~~~ 224 (527)
|||++||+ |+++|+.+.+++||||+++.++.+++.++|++ |+++++...+||||+|+++++|.++.+|
T Consensus 79 l~l~~mn~-----------i~~id~~~~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~y 147 (459)
T COG0277 79 LDLSRLNR-----------ILEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRY 147 (459)
T ss_pred EEchhhcc-----------hhccCcCCCEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceec
Confidence 99999999 56899999999999999999999999999997 4455555589999999999999999999
Q ss_pred CCccCcEeEEEEEeCCCcEEEcCCC-----CCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHH
Q 042782 225 GPQITNVHELDVVTGKGELLTCSEE-----QNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQ 299 (527)
Q Consensus 225 G~~~d~V~~levV~~~G~v~~~~~~-----~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~ 299 (527)
|.++|+|+++++|++||++++++.. .++||+++++||+|+|||||+++||+.|.|+......+.|++++.+....
T Consensus 148 G~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~ 227 (459)
T COG0277 148 GLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLA 227 (459)
T ss_pred ccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHhcccCCccceEEEEEEEEeccCCchheEEEEeCCCHHHHHHHH
Confidence 9999999999999999999999874 34899999999999999999999999999999999999999998887644
Q ss_pred HHHH---HcCCCCCCchhhhcccchhcchhhhhhccccccCCCCCcccccCCCCCceEEEEEEeecCCCCChhhHHHHHH
Q 042782 300 EYLI---SLHELPASQKFDYVEGFVIVDEGLINNWRSSFFSPRNPVKITSLGTDGGVLYCLEITKNYDESTADTTDQEVE 376 (527)
Q Consensus 300 ~~l~---~~~~~~~p~~~e~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~llle~~~~~~~~~~~~~~~~~~ 376 (527)
.... ...+ ..+.++|+++.. +.. ... +... ..++....+.+++|. ++.+...+.....
T Consensus 228 ~~~~~~~~~~~-~~~~~~e~~~~~-~~~---~~~-----~~~~-----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 288 (459)
T COG0277 228 VAAIALLEALG-VIPAALEFMDRP-IKA---AEA-----YLGG-----GALPLEAPARLLVEV----EGSDEAAVDEALE 288 (459)
T ss_pred HHHHHhhhhcC-CCceeeeecchh-HHH---HHH-----hccc-----cCCCCCCceEEEEEE----cCCcHHHHHHHHH
Confidence 4333 1111 346677777765 100 010 0000 112333335677775 3333456666777
Q ss_pred HHHHHhhhcCCceeeccchhhhhhhhhhhcccHHHHhhhhcCCC-------------cceecccCcccHHHHHHHHHHhh
Q 042782 377 SLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSKGLWEVPH-------------PWLNLFIPKSRIADFDKGVFKGI 443 (527)
Q Consensus 377 ~ll~~l~~~~g~~~~~d~~~~~~~~~v~~~~~~~~~~~lW~~r~-------------~~~dv~VP~s~l~~~~~~v~~~l 443 (527)
.+.+.+.... .. . ......+......+|..|+ -+.|+++|.++++++++++...+
T Consensus 289 ~~~~~~~~~~-~~--~---------~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~d~~vp~~~~~~~~~~~~~~~ 356 (459)
T COG0277 289 ALGELLLEHG-LA--R---------DLVVAQDLAEAARLWLARKGALAAAGALGPGVIQEDVVVPLEALPEFLREILALL 356 (459)
T ss_pred HHHHHHHhcC-Cc--e---------eEEEeCCHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHHHHH
Confidence 7777664322 00 0 0112333444556666655 24699999999999999874321
Q ss_pred -----------cCccCCCceEEeeCCCcc----cccccccCCChhhHHHHHHHhCCCCCCC
Q 042782 444 -----------LGNKTGGPILIYPMNKHK----WDNRSSVVTPDEDVFYLVAFLRSALDNG 489 (527)
Q Consensus 444 -----------~gh~g~G~ih~~p~~~~~----~~~~~~~~~p~~~v~~~v~~l~~~~~~~ 489 (527)
.+|.++||+|+....+.. +......+ .+.+..++..++|+++.+
T Consensus 357 ~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~gG~~~~~ 415 (459)
T COG0277 357 DKAGLALRVALFGHAGDGNLHLNILYDVGDEAEELARAEAL--NEAIEALAVELGGSISGE 415 (459)
T ss_pred HhcCCCceeeeecccCCCcceeeeccCCCccHHHHHHHHHH--HHHHHHHHHHhCCeeEEe
Confidence 179999999998764322 21222233 378899999999998875
No 9
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-36 Score=323.12 Aligned_cols=243 Identities=15% Similarity=0.138 Sum_probs=217.7
Q ss_pred ChHHHHccCCCCcEEcChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcC
Q 042782 61 DPTELLRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQT 140 (527)
Q Consensus 61 ~~~~l~~~~~~~~v~~d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~ 140 (527)
.+++|++++++++|.+|+..+..|++||.. .++.|.+||+|+|++||+++|++|++ +++||++||||||+.|++.+
T Consensus 5 li~~L~~IvG~~~Vltd~~~l~~Y~~D~r~-~~g~P~AVV~P~SteEVa~IVklC~e---~~vPVIPRGgGTGLtGGAvP 80 (564)
T PRK11183 5 LINELTRIVGSSHVLTDPAKTERYRKGFRS-GQGDALAVVFPGTLLELWRVLQACVA---ADKIIIMQAANTGLTGGSTP 80 (564)
T ss_pred HHHHHHHhcCcccEecCHHHHHHhccCccc-cCCCCCEEEecCCHHHHHHHHHHHHH---cCCeEEEeCCCcccccCccc
Confidence 467899999999999999999999999975 78899999999999999999999999 99999999999999999998
Q ss_pred CC------cEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCCCCC-c-CCCccccccccc
Q 042782 141 SN------GVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKS-W-TDYLYLSVGGTL 212 (527)
Q Consensus 141 ~~------gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~-~-~~~~~~TVGG~i 212 (527)
.+ +|+|||++||+ |.++| .+..++|+||+++.+|.+++.++|++|++ + ++...+||||+|
T Consensus 81 ~~~~~dR~gVVIsl~RMNr-----------IleID-~~~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnI 148 (564)
T PRK11183 81 NGNDYDRDIVIISTLRLDK-----------IQLLN-NGKQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGI 148 (564)
T ss_pred CCCCCcCCEEEEEhhHcCC-----------cEEEC-CCCeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccce
Confidence 42 79999999999 68888 45789999999999999999999998665 3 333457899999
Q ss_pred cCCcccCCccccCCccCcEeEEEEEeCCCcE-------EEcCCC----------CCc-----------------------
Q 042782 213 SNAGISGQAFHQGPQITNVHELDVVTGKGEL-------LTCSEE----------QNS----------------------- 252 (527)
Q Consensus 213 a~~g~G~~s~~~G~~~d~V~~levV~~~G~v-------~~~~~~----------~~~----------------------- 252 (527)
+||++|.+..+||.+.++++. ++|+++|++ ++.+.. .++
T Consensus 149 AtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~ 227 (564)
T PRK11183 149 CNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRD 227 (564)
T ss_pred EECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhc
Confidence 998889999999999999999 999999999 554331 123
Q ss_pred -----------chhhhh--hcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHHHHcCCCCCCchhhhccc
Q 042782 253 -----------GLFHAV--LGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYLISLHELPASQKFDYVEG 319 (527)
Q Consensus 253 -----------dL~~~~--~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~p~~~e~ld~ 319 (527)
|+.+++ .||+|+|||| +++|++.|+|+..+++.+.|+|.+++.+....++..-+ ..|.++|||+.
T Consensus 228 v~~~~parfnaDl~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~il~~~~-~lP~a~Eym~r 305 (564)
T PRK11183 228 VDADTPARFNADPRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHILANFK-NLPVAGEYMHR 305 (564)
T ss_pred cCCCCcccccCCHHHHhhccCCCceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHHHHhCC-CCceeEeecCH
Confidence 899999 9999999999 99999999999999999999999999999999998744 68999999988
Q ss_pred chh
Q 042782 320 FVI 322 (527)
Q Consensus 320 ~~~ 322 (527)
..+
T Consensus 306 ~~~ 308 (564)
T PRK11183 306 DAF 308 (564)
T ss_pred HHH
Confidence 766
No 10
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=1.7e-34 Score=311.38 Aligned_cols=205 Identities=16% Similarity=0.234 Sum_probs=189.2
Q ss_pred hhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCCCCCCCCCC
Q 042782 84 ASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSRGRRLGSSTPAA 163 (527)
Q Consensus 84 ~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~~~~~~~~~~~ 163 (527)
-+++|++.+...|..+++|+|++||+++|+.|++ ++.+|+++|+|||+.|.+.+ +|.+|||++||+
T Consensus 50 ~w~NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~---~g~~Vr~~GsGhS~sg~a~t-~g~lldL~~ln~---------- 115 (541)
T TIGR01676 50 TVSNWSGTHEVLTRTFHQPEAIEELEGIVKQANE---KKARIRPVGSGLSPNGIGLS-RAGMVNLALMDK---------- 115 (541)
T ss_pred cccccCCccccCcceEECCCCHHHHHHHHHHHHH---cCCcEEEECCCcCCCCcccC-CCeEEEhhhCCC----------
Confidence 3679999999999999999999999999999999 99999999999999998887 456899999999
Q ss_pred cceEEeCCCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCCccccCCccCcEeEEEEEeCCCcE
Q 042782 164 LRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGEL 243 (527)
Q Consensus 164 ~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G~v 243 (527)
++++|+++.+|+|+||+++.+|.+.|.++|++++.+++...+||||++++|++|. +.+||.+.|+|+++++|+++|++
T Consensus 116 -Vl~vD~~~~tVtV~AG~~l~~L~~~L~~~Glal~n~gsi~~~TIGGaiatgtHGt-g~~~G~l~d~V~~l~lVta~G~v 193 (541)
T TIGR01676 116 -VLEVDEEKKRVRVQAGIRVQQLVDAIKEYGITLQNFASIREQQIGGIIQVGAHGT-GAKLPPIDEQVIAMKLVTPAKGT 193 (541)
T ss_pred -CEEEcCCCCEEEEcCCCCHHHHHHHHHHcCCEeccCCCCCCceEccccccCCcCC-CCCCCCHHHhEEEEEEEECCCCE
Confidence 6899999999999999999999999999999988888888999999999987665 56899999999999999999999
Q ss_pred EEcCCCCCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHHHHcC
Q 042782 244 LTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYLISLH 306 (527)
Q Consensus 244 ~~~~~~~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l~~~~ 306 (527)
+++++.+|+|||++++||+|+|||||++||+++|.+..+..... .+++++.+....+++..
T Consensus 194 v~~s~~~~pdLF~AargslG~LGVItevTLr~~Pa~~l~~~~~~--~~~~e~l~~~~~~~~~~ 254 (541)
T TIGR01676 194 IEISKDKDPELFFLARCGLGGLGVVAEVTLQCVERQELVEHTFI--SNMKDIKKNHKKFLADN 254 (541)
T ss_pred EEECCCCCHHHHHHHhcCCCceEeEEEEEEEEEeccceeEEEEe--cCHHHHHHHHHHHHhcC
Confidence 99999899999999999999999999999999999987665443 68999999998888764
No 11
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=3.8e-33 Score=298.24 Aligned_cols=203 Identities=23% Similarity=0.305 Sum_probs=186.3
Q ss_pred hhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCCCCCCCCCCc
Q 042782 85 SLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSRGRRLGSSTPAAL 164 (527)
Q Consensus 85 ~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~~~~~~~~~~~~ 164 (527)
+++|++.+...|.+|++|+|++||+++|++|++ +++||+++|+|||+.+.+.. +|++|||++||+
T Consensus 4 w~nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~---~~~~v~v~G~GhS~s~~~~~-~gvvIdl~~l~~----------- 68 (438)
T TIGR01678 4 FQNWAKTYSASPEVYYQPTSVEEVREVLALARE---QKKKVKVVGGGHSPSDIACT-DGFLIHLDKMNK----------- 68 (438)
T ss_pred EEeCCCcccCCCCEEEecCCHHHHHHHHHHHHH---CCCeEEEECCCCCCCCCccC-CeEEEEhhhcCC-----------
Confidence 478999899999999999999999999999999 99999999999999887765 789999999999
Q ss_pred ceEEeCCCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCCccccCCccCcEeEEEEEeCCCcEE
Q 042782 165 RPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELL 244 (527)
Q Consensus 165 ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G~v~ 244 (527)
++++|+++.+|+|+||+++.+|.+.|.++|++++..++...+||||+++++++| .+.+||.+.|+|.++++|++||+++
T Consensus 69 i~~id~~~~~vtV~aG~~l~~L~~~L~~~Gl~l~~~g~~~~~TvGG~iatg~hG-~~~~~G~~~d~V~~l~vV~~~G~i~ 147 (438)
T TIGR01678 69 VLQFDKEKKQITVEAGIRLYQLHEQLDEHGYSMSNLGSISEVSVAGIISTGTHG-SSIKHGILATQVVALTIMTADGEVL 147 (438)
T ss_pred ceEEcCCCCEEEEcCCCCHHHHHHHHHHcCCEecCCCCCCCceeeehhcCCCCC-CccccCcHHhhEEEEEEEcCCCcEE
Confidence 679999999999999999999999999999997777888889999999988766 5799999999999999999999999
Q ss_pred EcCCCCCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHHHHc
Q 042782 245 TCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYLISL 305 (527)
Q Consensus 245 ~~~~~~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l~~~ 305 (527)
++++++++|||++.+||+|+|||||++|||++|.+...... ...+++++++..+.+.+.
T Consensus 148 ~~s~~~~~dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~~--~~~~~~~~~~~~~~~~~~ 206 (438)
T TIGR01678 148 ECSEERNADVFQAARVSLGCLGIIVTVTIQVVPQFHLQETS--FVSTLKELLDNWDSHWKS 206 (438)
T ss_pred EeCCCCChhHHHHHhcCCCceEeeEEEEEEEEeccceEEEE--ecCCHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999998776653 557899988888777664
No 12
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=6.3e-33 Score=295.79 Aligned_cols=200 Identities=21% Similarity=0.260 Sum_probs=180.8
Q ss_pred hhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCCCCCCCCCCc
Q 042782 85 SLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSRGRRLGSSTPAAL 164 (527)
Q Consensus 85 ~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~~~~~~~~~~~~ 164 (527)
+++|++.+...|.+|++|+|++||+++|+.|++ ||+++|+|||+.+.+.. +|++|||++||+
T Consensus 1 w~nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~------~v~~~G~Ghs~~~~~~~-~g~~idl~~l~~----------- 62 (419)
T TIGR01679 1 WSNWSGEQVAAPSAIVRPTDEGELADVIAQAAK------PVRAVGSGHSFTDLACT-DGTMISLTGLQG----------- 62 (419)
T ss_pred CcCCCCCccCCCCeEECCCCHHHHHHHHHHhCC------CEEEEeCCCCCCCcccC-CCEEEEhhHcCC-----------
Confidence 468999889999999999999999999999863 69999999999887665 789999999999
Q ss_pred ceEEeCCCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCCccccCCccCcEeEEEEEeCCCcEE
Q 042782 165 RPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELL 244 (527)
Q Consensus 165 ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G~v~ 244 (527)
++++|+++.+|+||||+++.+|.+.+.++|++++..++....||||+++++++| .+.+||.+.|+|++++||++||+++
T Consensus 63 i~~~d~~~~~v~v~aG~~l~~l~~~L~~~G~~l~~~~~~~~~tvGG~ia~~~hG-~g~~~G~~~d~V~~l~vV~a~G~v~ 141 (419)
T TIGR01679 63 VVDVDQPTGLATVEAGTRLGALGPQLAQRGLGLENQGDIDPQSIGGALGTATHG-TGVRFQALHARIVSLRLVTAGGKVL 141 (419)
T ss_pred ceeecCCCCEEEEcCCCCHHHHHHHHHHcCCccccCCCCCCceeccceecCCCC-CCccCCchhhhEEEEEEEcCCCCEE
Confidence 679999999999999999999999999999997777777788999999988755 4679999999999999999999999
Q ss_pred EcCCCCCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHHHHc
Q 042782 245 TCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYLISL 305 (527)
Q Consensus 245 ~~~~~~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l~~~ 305 (527)
++++.+|+||||+++||+|+|||||++|||++|.+...... ...+++++.+....+++.
T Consensus 142 ~~~~~~~~dLf~a~~g~~G~lGVIt~vtl~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~ 200 (419)
T TIGR01679 142 DLSEGDDQDMYLAARVSLGALGVISQVTLQTVALFRLRRRD--WRRPLAQTLERLDEFVDG 200 (419)
T ss_pred EEcCCCCHHHHHHHHhCCCceEEEEEEEEEeecceEeEEEE--EecCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999766554 446888888888888775
No 13
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=4.3e-32 Score=296.20 Aligned_cols=208 Identities=21% Similarity=0.167 Sum_probs=183.8
Q ss_pred HHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEc-CCCCCCCCCcCC---CcEEEEcCCCCCCCCC
Q 042782 82 QTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARG-HGHSINGQAQTS---NGVVIQMSGSRGRRLG 157 (527)
Q Consensus 82 ~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG-~G~s~~g~~~~~---~gvvIdl~~mn~~~~~ 157 (527)
..++++|++.+...|.+|++|+|++||+++|++|++ +++||+++| +||++.+.+.+. +|++|||++||+
T Consensus 18 ~~~w~nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~---~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~---- 90 (557)
T TIGR01677 18 SNAYGAFPDRSTCRAANVAYPKTEAELVSVVAAATA---AGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNH---- 90 (557)
T ss_pred ecchhhcCCcccCCCCEEEecCCHHHHHHHHHHHHH---CCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCC----
Confidence 347799999999999999999999999999999999 999999995 699988766542 469999999999
Q ss_pred CCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCCc-cccCCccCcEeEEEE
Q 042782 158 SSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQA-FHQGPQITNVHELDV 236 (527)
Q Consensus 158 ~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s-~~~G~~~d~V~~lev 236 (527)
++++|.++.+|+|+||+++.+|.+.|.++|++++..++...+||||+++++++|... .+||.+.|+|++++|
T Consensus 91 -------il~iD~~~~tVtV~AG~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~v 163 (557)
T TIGR01677 91 -------VVAVDATAMTVTVESGMSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRL 163 (557)
T ss_pred -------CEEEeCCCCEEEECCCCcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEE
Confidence 789999999999999999999999999999987777777788999999988877555 488999999999999
Q ss_pred EeCCC------cEEEcCCCCCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHHHHc
Q 042782 237 VTGKG------ELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYLISL 305 (527)
Q Consensus 237 V~~~G------~v~~~~~~~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l~~~ 305 (527)
|+++| +++++++.+|+|||++++||+|+|||||++|||++|.+.... ...+...+.+.+....+.+.
T Consensus 164 V~a~G~a~G~~~v~~~s~~~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~~~--~~~~~~~~~l~~~~~~~~~~ 236 (557)
T TIGR01677 164 VVPASAAEGFAKVRILSEGDTPNEFNAAKVSLGVLGVISQVTLALQPMFKRSV--TYTMRDDSDFEDQFVTFGKK 236 (557)
T ss_pred EeCCCcccCcceEEEeCCCCCHHHHHhhccCCCccEeeeEEEEEEEccccceE--EEEcCCHHHHHHHHHHhhcC
Confidence 99998 899999989999999999999999999999999999987433 44567788877767666553
No 14
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.98 E-value=2.6e-31 Score=275.43 Aligned_cols=184 Identities=18% Similarity=0.235 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHHHhcCcCCceEEEEcCCCC-CCCCCcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCcc
Q 042782 104 SADDITRVVKAAYESEAHGFTISARGHGHS-INGQAQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGEL 182 (527)
Q Consensus 104 s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s-~~g~~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~ 182 (527)
.++||+++|++|++ +++||++||+||+ ..|.. .++++|||++||+ |+++|+++.+|+|+||++
T Consensus 3 ~~~ev~~~v~~A~~---~~~~v~~~GgGt~~~~g~~--~~~~vldl~~ln~-----------Ile~d~~~~~vtV~AG~~ 66 (352)
T PRK11282 3 ISAALLERVRQAAA---DGTPLRIRGGGSKDFYGRA--LAGEVLDTRAHRG-----------IVSYDPTELVITARAGTP 66 (352)
T ss_pred hHHHHHHHHHHHHH---CCCeEEEECCCCCCCCCCC--CCCeEEEcccCCC-----------cEEEcCCCCEEEECCCCC
Confidence 47899999999999 9999999999975 44552 3678999999999 689999999999999999
Q ss_pred HHHHHHHHHhCCCC-CCCcCCCc-cccccccccCCcccCCccccCCccCcEeEEEEEeCCCcEEEcCCC-----CCcchh
Q 042782 183 WIDVLRSTLEHGLA-PKSWTDYL-YLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEE-----QNSGLF 255 (527)
Q Consensus 183 ~~~l~~~l~~~Gl~-p~~~~~~~-~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~-----~~~dL~ 255 (527)
+.+|.+++.++|++ |..++++. .+||||++++|++|..+.+||.++|+|+++++|+++|++++++.. .++||+
T Consensus 67 l~el~~~L~~~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~ 146 (352)
T PRK11282 67 LAELEAALAEAGQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVS 146 (352)
T ss_pred HHHHHHHHHHcCCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHH
Confidence 99999999999986 43444444 489999999999999999999999999999999999999999764 468999
Q ss_pred hhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHHHH
Q 042782 256 HAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYLIS 304 (527)
Q Consensus 256 ~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l~~ 304 (527)
++++||+|+|||||+++||++|.|+...++.+.++ .+++.+.+..+..
T Consensus 147 ~l~~Gs~GtLGVitevtlkl~P~p~~~~t~~~~~~-~~~a~~~~~~~~~ 194 (352)
T PRK11282 147 RLMAGSLGTLGVLLEVSLKVLPRPRAELTLRLEMD-AAEALRKLNEWGG 194 (352)
T ss_pred HHHhhCCchhhhheEEEEEEEecCceEEEEEEecC-HHHHHHHHHHHhc
Confidence 99999999999999999999999998877766654 5666666666554
No 15
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.97 E-value=1.2e-30 Score=283.62 Aligned_cols=207 Identities=20% Similarity=0.286 Sum_probs=186.6
Q ss_pred HhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCCCCCCCCC
Q 042782 83 TASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSRGRRLGSSTPA 162 (527)
Q Consensus 83 ~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~~~~~~~~~~ 162 (527)
..+++|++.....|.+++.|+|++||+++|+.|++ +++||+++|+|||+.+.+.. ++.+|||++||+
T Consensus 84 ~~~~NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~---~g~~VrvvGsGhS~~~l~~t-d~glIdL~~l~~--------- 150 (573)
T PLN02465 84 HTVSNWSGTHEVQTRRYHQPESLEELEDIVKEAHE---KGRRIRPVGSGLSPNGLAFS-REGMVNLALMDK--------- 150 (573)
T ss_pred hhccccccccCCCCCEEEEeCCHHHHHHHHHHHHH---cCCcEEEEcCCcCCCCeeeC-CCEEEECcCCCC---------
Confidence 35679999999999999999999999999999999 99999999999999988887 455789999999
Q ss_pred CcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCCccccCCccCcEeEEEEEeCCCc
Q 042782 163 ALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGE 242 (527)
Q Consensus 163 ~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G~ 242 (527)
++++|+++.+|+|+||+++.+|.+.+.++|++++..++....||||++++++ +|.+.++|.+.|+|+++++|+++|+
T Consensus 151 --Il~vD~e~~~VtV~AG~~l~~L~~~L~~~GLal~n~g~I~~~TIGGaIstGt-HGtG~~~g~i~d~V~~l~lVta~G~ 227 (573)
T PLN02465 151 --VLEVDKEKKRVTVQAGARVQQVVEALRPHGLTLQNYASIREQQIGGFIQVGA-HGTGARIPPIDEQVVSMKLVTPAKG 227 (573)
T ss_pred --cEEEeCCCCEEEEccCCCHHHHHHHHHHcCCEeccCCCCCCeeecchhhCCC-CCcCCCcCcHhheEEEEEEEECCCC
Confidence 6899999999999999999999999999999988888878899999998776 5556789999999999999999999
Q ss_pred EEEcCCCCCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHHHHcCC
Q 042782 243 LLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYLISLHE 307 (527)
Q Consensus 243 v~~~~~~~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l~~~~~ 307 (527)
++++++.+++|||++.++|+|.|||||++||+++|.+...... ...+++++.+....+++...
T Consensus 228 vv~~s~~~~pdLF~aar~glG~lGVIteVTLql~P~~~L~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (573)
T PLN02465 228 TIELSKEDDPELFRLARCGLGGLGVVAEVTLQCVPAHRLVEHT--FVSNRKEIKKNHKKWLSENK 290 (573)
T ss_pred EEEECCCCCHHHHhHhhccCCCCcEEEEEEEEEEecCceEEEE--EEecHHHHHHHHHHHHHhCc
Confidence 9999998899999999999999999999999999999865443 33578888998888887643
No 16
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.95 E-value=9.7e-28 Score=240.82 Aligned_cols=325 Identities=17% Similarity=0.187 Sum_probs=233.7
Q ss_pred cCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCc-CC----CcEEEEcCCCCCCCCCCCCCC
Q 042782 88 FGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQ-TS----NGVVIQMSGSRGRRLGSSTPA 162 (527)
Q Consensus 88 ~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~-~~----~gvvIdl~~mn~~~~~~~~~~ 162 (527)
|-+.+...|+.||.|++.+||.++|+.|.+ |++.++|.|||||.++.-. +. .-+.+||+.||+
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~k---hN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnr--------- 220 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMK---HNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNR--------- 220 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhh---cCeEEEEeCCcccccccccCCcccceeEEEecHHhhhh---------
Confidence 345688899999999999999999999999 9999999999999875543 32 225678889999
Q ss_pred CcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCC-CCCcCCCccccccccccCCcccCCccccCCccCcEeEEEEEeCCC
Q 042782 163 ALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLA-PKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKG 241 (527)
Q Consensus 163 ~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~-p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G 241 (527)
++.+|.++.++.+++|++-.+|.+.|.+.|++ ...+-++..+|+||++++-++|+.-..||.+-|.|+.+++|+|.|
T Consensus 221 --iLWidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~G 298 (613)
T KOG1233|consen 221 --ILWIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKG 298 (613)
T ss_pred --eeEeccccceEEEecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcc
Confidence 79999999999999999999999999999996 444556678899999999999999999999999999999999999
Q ss_pred cEEE-cCC---CCCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHHHHcCCCCCCchhhhc
Q 042782 242 ELLT-CSE---EQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYLISLHELPASQKFDYV 317 (527)
Q Consensus 242 ~v~~-~~~---~~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~p~~~e~l 317 (527)
.+-. |.. ..+||+.+...||+|||||||++++|..|.|+..+.-.+.|++|++-....+.+-..+ -+|+.+.+|
T Consensus 299 iiek~Cq~PRmS~GPDihh~IlGSEGTLGVitEvtiKirPiPe~~ryGS~aFPNFEqGV~f~REvA~qR--CqPAS~RLM 376 (613)
T KOG1233|consen 299 IIEKQCQVPRMSSGPDIHHIILGSEGTLGVITEVTIKIRPIPEVKRYGSFAFPNFEQGVNFFREVAIQR--CQPASLRLM 376 (613)
T ss_pred hhhhhhcCCcccCCCCcceEEeccCcceeEEEEEEEEEeechhhhhcCccccCcHHHHHHHHHHHHHHh--cCchheeee
Confidence 7654 322 2578999999999999999999999999999999999999999999988887765442 478999999
Q ss_pred ccchhcchhhh----hhccccccCCC---CCcccccCCCC--CceEEEEEEeecCCCCChhhHHHHHHHHHHHhhhcCCc
Q 042782 318 EGFVIVDEGLI----NNWRSSFFSPR---NPVKITSLGTD--GGVLYCLEITKNYDESTADTTDQEVESLLKKLNFIQSS 388 (527)
Q Consensus 318 d~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~l~~~--~~~~llle~~~~~~~~~~~~~~~~~~~ll~~l~~~~g~ 388 (527)
|+..++-..++ +.|..++...- ......++..+ -.+.+++| | +.+++++.-+++-+......|.
T Consensus 377 DN~QF~fGqALKp~~~Swwas~~d~~kk~YiTswKGfd~nqicaATllfE------G-dre~V~qhE~~~y~iAekF~G~ 449 (613)
T KOG1233|consen 377 DNDQFVFGQALKPASDSWWASLKDSVKKMYITSWKGFDVNQICAATLLFE------G-DREEVDQHEERLYKIAEKFHGV 449 (613)
T ss_pred cccceecccccCcchhhHHHHHHHHHhhheeecccCcCHhhhhhhhheec------c-cHHHHHHHHHHHHHHHHHhCCc
Confidence 98776522111 12221110000 00001122211 12344444 4 5566776666666655544554
Q ss_pred eeeccchhhhhhhhhhhcccHHHHhhhhcCCC----cceecccCcccHHHHHHHHH
Q 042782 389 VFTTDLLYVDFLDRVHKAELKLRSKGLWEVPH----PWLNLFIPKSRIADFDKGVF 440 (527)
Q Consensus 389 ~~~~d~~~~~~~~~v~~~~~~~~~~~lW~~r~----~~~dv~VP~s~l~~~~~~v~ 440 (527)
....+.....|+--..++. .+.- .+-| ..++.+||+++...+.+.+.
T Consensus 450 ~aG~~NGqrGY~LTfvIAY--iRDl---gl~~gvlgESFETSvPWDrv~~LCRnVK 500 (613)
T KOG1233|consen 450 VAGAENGQRGYRLTFVIAY--IRDL---GLNHGVLGESFETSVPWDRVLSLCRNVK 500 (613)
T ss_pred cccccccccceEEEEeHHH--HHhh---cccccchhhcccccCCHHHHHHHHHHHH
Confidence 4332211111110000110 0000 1111 23589999999999988874
No 17
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=1.1e-26 Score=210.74 Aligned_cols=138 Identities=31% Similarity=0.482 Sum_probs=127.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEE
Q 042782 96 PWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYV 175 (527)
Q Consensus 96 P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v 175 (527)
|.+|++|+|++||++++++|++ +++|++++|+||++.+.+...++++|||++||+ ++++|+++.++
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~---~~~~v~~~g~G~~~~~~~~~~~~ivi~~~~l~~-----------i~~id~~~~~v 66 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANE---NGVPVRVRGGGHSWTGQSSDEGGIVIDMSRLNK-----------IIEIDPENGTV 66 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHH---TTSEEEEESSSTTSSSTTSSTTEEEEECTTCGC-----------EEEEETTTTEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHH---cCCcEEEEcCCCCcccccccCCcEEEeeccccc-----------cccccccceeE
Confidence 7899999999999999999999 999999999999999888756999999999999 79999999999
Q ss_pred EEeCCccHHHHHHHHHhCCCC-CCCcCCCccccccccccCCcccCCccccCCccCcEeEEEEEeCCCcEEEcC
Q 042782 176 DVWGGELWIDVLRSTLEHGLA-PKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCS 247 (527)
Q Consensus 176 ~V~aGv~~~~l~~~l~~~Gl~-p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G~v~~~~ 247 (527)
+|+||++|.+|.+++.++|+. |..+.+....|+||+++++++|..+.+||...|+|+++++|++||+++++|
T Consensus 67 ~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~s 139 (139)
T PF01565_consen 67 TVGAGVTWGDLYEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRCS 139 (139)
T ss_dssp EEETTSBHHHHHHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEEE
T ss_pred EEeccccchhcccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEeC
Confidence 999999999999999999986 445666667899999999999999999999999999999999999999985
No 18
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.91 E-value=1.6e-23 Score=215.17 Aligned_cols=196 Identities=23% Similarity=0.251 Sum_probs=169.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCCC
Q 042782 93 RAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEKE 172 (527)
Q Consensus 93 ~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~ 172 (527)
.+++.-|-+|+|++|+.++|+.|++ ++.++++.|.|||..+-... +|.+|++++||+ ++++|++.
T Consensus 47 ~c~aanv~yP~teaeL~~lVa~A~~---a~~kirvVg~gHSp~~l~ct-dg~lisl~~lnk-----------Vv~~dpe~ 111 (518)
T KOG4730|consen 47 TCKAANVNYPKTEAELVELVAAATE---AGKKIRVVGSGHSPSKLVCT-DGLLISLDKLNK-----------VVEFDPEL 111 (518)
T ss_pred hhhhcccCCCCCHHHHHHHHHHHHH---cCceEEEecccCCCCcceec-cccEEEhhhhcc-----------ceeeCchh
Confidence 3445557779999999999999999 99999999999999998887 779999999999 79999999
Q ss_pred cEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCCccccCCccCcEeEEEEEeCCCcEEEcCCCCCc
Q 042782 173 RYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEEQNS 252 (527)
Q Consensus 173 ~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~~~~ 252 (527)
.+||||+|+++.+|.+++.+.|++.+..++....+|||+++++++|....-|+.......-+.++.++|.++.++++.++
T Consensus 112 ~tvTV~aGirlrQLie~~~~~GlsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dp 191 (518)
T KOG4730|consen 112 KTVTVQAGIRLRQLIEELAKLGLSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDP 191 (518)
T ss_pred ceEEeccCcCHHHHHHHHHhcCccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCH
Confidence 99999999999999999999999988888888899999999998665444366666666666666789999999999999
Q ss_pred chhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHH-HHHHc
Q 042782 253 GLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQE-YLISL 305 (527)
Q Consensus 253 dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~-~l~~~ 305 (527)
++|+|.+.|.|.||||.++||+++|..+...+..+ .+..+..++.. .+.+.
T Consensus 192 e~F~AAkvSLG~LGVIs~VTl~~vp~Fk~s~t~~v--~n~~dl~~d~~~~~~~~ 243 (518)
T KOG4730|consen 192 ELFNAAKVSLGVLGVISQVTLSVVPAFKRSLTYVV--TNDSDLFKDWKVTLGES 243 (518)
T ss_pred HHHhhhhhcccceeEEEEEEEEEEecceeeeEEEE--echHHHHHHHHHHhccc
Confidence 99999999999999999999999999987666544 56777666665 55443
No 19
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.90 E-value=2.3e-23 Score=212.93 Aligned_cols=163 Identities=21% Similarity=0.251 Sum_probs=137.8
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCC-CCCCCCCCCCCCCcceEEeC
Q 042782 92 SRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSG-SRGRRLGSSTPAALRPHVYE 170 (527)
Q Consensus 92 ~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~-mn~~~~~~~~~~~~ii~id~ 170 (527)
..+.|.+++.|+|++||++++++|++ +++|+.++|+|||+...+.+.+|++|+|++ |+. +++
T Consensus 27 igg~a~~vv~P~s~edv~~~v~~a~~---~~~p~~v~GgGsnll~~d~g~~gvvI~l~~~l~~------------i~~-- 89 (298)
T PRK13905 27 VGGPADYLVEPADIEDLQEFLKLLKE---NNIPVTVLGNGSNLLVRDGGIRGVVIRLGKGLNE------------IEV-- 89 (298)
T ss_pred cCceEeEEEeCCCHHHHHHHHHHHHH---cCCCEEEEeCCceEEecCCCcceEEEEecCCcce------------EEe--
Confidence 56789999999999999999999999 999999999999988766555699999998 988 444
Q ss_pred CCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCCccccC-CccCcEeEEEEEeCCCcEEEcCCC
Q 042782 171 KERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQG-PQITNVHELDVVTGKGELLTCSEE 249 (527)
Q Consensus 171 ~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G-~~~d~V~~levV~~~G~v~~~~~~ 249 (527)
++.+++|+||++|.+|.+++.++|+....+......||||+++.|+ |. || .+.|+|.++++|+++|++++++++
T Consensus 90 ~~~~v~v~aG~~~~~L~~~l~~~Gl~gle~~~gipGTVGGai~~Na-G~----~G~~~~d~v~~v~vv~~~G~~~~~~~~ 164 (298)
T PRK13905 90 EGNRITAGAGAPLIKLARFAAEAGLSGLEFAAGIPGTVGGAVFMNA-GA----YGGETADVLESVEVLDRDGEIKTLSNE 164 (298)
T ss_pred cCCEEEEECCCcHHHHHHHHHHcCCCcchhccCCCcchhHHHHHcC-Cc----CceEhheeEEEEEEEeCCCCEEEEEHH
Confidence 3468999999999999999999998533222223359999999443 21 44 799999999999999999998753
Q ss_pred CCcchhhhhhcCCCC--eEEEEeEEEeeecCC
Q 042782 250 QNSGLFHAVLGGLGQ--FGIITRARISLEPAP 279 (527)
Q Consensus 250 ~~~dL~~~~~Gs~G~--lGIIt~atl~l~p~p 279 (527)
|++|+++++.+. +||||+++|++.|..
T Consensus 165 ---e~~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 165 ---ELGFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred ---HcCCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 899999998755 899999999999984
No 20
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.88 E-value=4e-22 Score=203.91 Aligned_cols=187 Identities=23% Similarity=0.229 Sum_probs=150.3
Q ss_pred HHHHccCCCCcEEcChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCC
Q 042782 63 TELLRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSN 142 (527)
Q Consensus 63 ~~l~~~~~~~~v~~d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~ 142 (527)
+.|.+......+..++ .+..|+++ .+.+.|.++++|+|++||++++++|++ +++|+.++|+|||+...+.+.+
T Consensus 8 ~~l~~~l~~~~~~~~~-~l~~~tt~---~igg~a~~vv~p~~~edv~~~l~~a~~---~~ip~~v~GgGSNll~~d~g~~ 80 (305)
T PRK12436 8 EYLSTVLPEGHVKQDE-MLKNHTHI---KVGGKADVFVAPTNYDEIQEVIKYANK---YNIPVTFLGNGSNVIIKDGGIR 80 (305)
T ss_pred HHHHHhcCcCceecCC-cchhccCc---ccCceEEEEEecCCHHHHHHHHHHHHH---cCCCEEEEcCCeEEEEeCCCee
Confidence 4455554444566664 66667654 267889999999999999999999999 9999999999999985554456
Q ss_pred cEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCCcc
Q 042782 143 GVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAF 222 (527)
Q Consensus 143 gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~ 222 (527)
|++|+|++|+. ++++ +.+++|+||+.|.+|.+++.++||.+..+......||||++.+|+.+
T Consensus 81 GvvI~l~~l~~------------i~~~--~~~v~v~aG~~~~~L~~~~~~~gl~Gle~~~giPGtVGGav~~NAGa---- 142 (305)
T PRK12436 81 GITVSLIHITG------------VTVT--GTTIVAQCGAAIIDVSRIALDHNLTGLEFACGIPGSVGGALYMNAGA---- 142 (305)
T ss_pred EEEEEeCCcCc------------EEEe--CCEEEEEeCCcHHHHHHHHHHcCCccchhhcCCccchhHHHHhcCcc----
Confidence 99999988998 5665 35899999999999999999999975444444456999999955422
Q ss_pred ccC-CccCcEeEEEEEeCCCcEEEcCCCCCcchhhhhhcCC--CCeEEEEeEEEeeecC
Q 042782 223 HQG-PQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGL--GQFGIITRARISLEPA 278 (527)
Q Consensus 223 ~~G-~~~d~V~~levV~~~G~v~~~~~~~~~dL~~~~~Gs~--G~lGIIt~atl~l~p~ 278 (527)
|| .+.|.+.+++|++++|++++++++ |+.+.+|.|. ....||++|+|+|.|.
T Consensus 143 -yG~~~~dvl~~v~vv~~~G~v~~~~~~---e~~f~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 143 -YGGEISFVLTEAVVMTGDGELRTLTKE---AFEFGYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred -chhehheeeeEEEEEeCCCCEEEEEHH---HhcCcCCCCcCCCCCEEEEEEEEEEcCC
Confidence 56 566777799999999999999875 8999999984 3357999999999875
No 21
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=7e-21 Score=194.86 Aligned_cols=188 Identities=18% Similarity=0.203 Sum_probs=151.6
Q ss_pred hHHHHccCCCCcEEcChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCC
Q 042782 62 PTELLRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTS 141 (527)
Q Consensus 62 ~~~l~~~~~~~~v~~d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~ 141 (527)
+++|++......+..+ ..+..|.+.. ..+.+.++++|+|++||++++++|++ +++|+.++|+|||+...+.+.
T Consensus 7 ~~~l~~~~~~~~v~~~-~~L~~~tt~~---iGG~A~~~v~p~~~edv~~~v~~a~~---~~ip~~vlGgGSNll~~d~g~ 79 (307)
T PRK13906 7 YQALQQLIPNEKIKVD-EPLKRYTYTK---TGGNADFYITPTKNEEVQAVVKYAYQ---NEIPVTYLGNGSNIIIREGGI 79 (307)
T ss_pred HHHHHHhcCCCeeecC-CccccceEcC---cCceeEEEEEcCCHHHHHHHHHHHHH---cCCCEEEEcCceeEeecCCCc
Confidence 4567776544467776 3666676654 34789999999999999999999999 999999999999998655555
Q ss_pred CcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCCc
Q 042782 142 NGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQA 221 (527)
Q Consensus 142 ~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s 221 (527)
+|++|++++|++ ++++. .+++|+||+.|.+|.+++.++||....+......||||++.+|+ |.
T Consensus 80 ~GvvI~l~~l~~------------i~~~~--~~v~v~aG~~~~~l~~~~~~~Gl~GlE~~~gIPGtVGGav~mNa-Ga-- 142 (307)
T PRK13906 80 RGIVISLLSLDH------------IEVSD--DAIIAGSGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYMNA-GA-- 142 (307)
T ss_pred ceEEEEecCccc------------eEEeC--CEEEEECCCcHHHHHHHHHHcCCccchhhcCCCccHhHHHHhhC-Cc--
Confidence 799999988998 56654 48999999999999999999999644333223459999999554 22
Q ss_pred ccc-CCccCcEeEEEEEeCCCcEEEcCCCCCcchhhhhhcCC--CCeEEEEeEEEeeecC
Q 042782 222 FHQ-GPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGL--GQFGIITRARISLEPA 278 (527)
Q Consensus 222 ~~~-G~~~d~V~~levV~~~G~v~~~~~~~~~dL~~~~~Gs~--G~lGIIt~atl~l~p~ 278 (527)
| |.++|+|.++++|+++|++++.+++ |+.+.+|.|. ..--||++++|+|.|.
T Consensus 143 --yGg~i~D~l~~v~vv~~~G~~~~~~~~---e~~f~YR~S~~~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 143 --YGGEVKDCIDYALCVNEQGSLIKLTTK---ELELDYRNSIIQKEHLVVLEAAFTLAPG 197 (307)
T ss_pred --chhhhhhheeEEEEEeCCCCEEEEEHH---HccCcCCcccCCCCCEEEEEEEEEECCC
Confidence 4 6899999999999999999999775 7889999875 2236999999999973
No 22
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=2.5e-20 Score=190.35 Aligned_cols=188 Identities=19% Similarity=0.206 Sum_probs=144.4
Q ss_pred hHHHHccCCCCcEEcChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCC
Q 042782 62 PTELLRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTS 141 (527)
Q Consensus 62 ~~~l~~~~~~~~v~~d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~ 141 (527)
.++|++ .+.+.+..++ .+..|++ | ...+.|.++++|+|++||++++++|++ +++|+.++|+|||+...+.+.
T Consensus 7 ~~~~~~-~~~~~~~~~~-~l~~~tt-~--~igg~a~~~v~p~~~edl~~~v~~a~~---~~ip~~vlGgGSNllv~d~g~ 78 (302)
T PRK14652 7 RDEIAR-RVRGEVLRDA-PLAPRTA-V--RVGGPADLLVRPADPDALSALLRAVRE---LGVPLSILGGGANTLVADAGV 78 (302)
T ss_pred HHHHHH-hhccccccCC-CcccccE-e--ecCCcceEEEEcCCHHHHHHHHHHHHH---CCCcEEEEcCCcceeecCCCE
Confidence 345544 3344455554 4444432 2 367899999999999999999999999 999999999999987544444
Q ss_pred CcEEEEcCC-CCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCC
Q 042782 142 NGVVIQMSG-SRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQ 220 (527)
Q Consensus 142 ~gvvIdl~~-mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~ 220 (527)
+|++|++++ ++. +..+ +.+++|+||+.|.+|.+++.++||.+..+.+....||||++..|+ |
T Consensus 79 ~gvVI~l~~~~~~------------i~~~--~~~v~v~AG~~~~~L~~~~~~~GL~GlE~l~gIPGTvGGav~mNa-G-- 141 (302)
T PRK14652 79 RGVVLRLPQDFPG------------ESTD--GGRLVLGAGAPISRLPARAHAHGLVGMEFLAGIPGTLGGAVAMNA-G-- 141 (302)
T ss_pred eeEEEEecCCcce------------EEec--CCEEEEECCCcHHHHHHHHHHcCCcccccccCCCcchhHHHHHcC-C--
Confidence 589999987 444 4433 458999999999999999999999744443333459999999553 2
Q ss_pred ccccCCccCcEeEEEEEeCCCcEEEcCCCCCcchhhhhhcCC-CCeEEEEeEEEeeecCC
Q 042782 221 AFHQGPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGL-GQFGIITRARISLEPAP 279 (527)
Q Consensus 221 s~~~G~~~d~V~~levV~~~G~v~~~~~~~~~dL~~~~~Gs~-G~lGIIt~atl~l~p~p 279 (527)
.+||.+.|+|.++++|+++| +.+... .|+.+.+|+|. +.-||||+++|+|.|..
T Consensus 142 -a~ggei~d~v~~v~vv~~~G-~~~~~~---~e~~f~YR~s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 142 -TKLGEMKDVVTAVELATADG-AGFVPA---AALGYAYRTCRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred -CCceEhhheEEEEEEECCCC-cEEeeh---hhcCcccceeccCCCeEEEEEEEEEecCC
Confidence 46799999999999999999 555544 48889998864 33489999999999964
No 23
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.82 E-value=9.6e-20 Score=184.81 Aligned_cols=159 Identities=20% Similarity=0.309 Sum_probs=133.8
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCC
Q 042782 92 SRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEK 171 (527)
Q Consensus 92 ~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~ 171 (527)
+.+.|.++++|+|++||++++++|++ +++|+.++|+|||+.+.+...+|++|++++|+. +.+++
T Consensus 9 igg~a~~~v~p~s~edl~~~l~~a~~---~~~p~~vlGgGSNll~~d~~~~gvvi~l~~~~~------------~~~~~- 72 (284)
T TIGR00179 9 IGGNARHIVCPESIEQLVNVLDNAKE---EDQPLLILGEGSNLLILDDGRGGVIINLGKGID------------IEDDE- 72 (284)
T ss_pred cCceeeEEEEeCCHHHHHHHHHHHHH---cCCCEEEEecceEEEEccCCcCeEEEECCCCce------------EEEec-
Confidence 57889999999999999999999999 999999999999999887767899999999988 44555
Q ss_pred CcEEEEeCCccHHHHHHHHHhCCCC----CCCcCCCccccccccccCCcccCCccccCCccC-cEeEEEEEeCCCcEEEc
Q 042782 172 ERYVDVWGGELWIDVLRSTLEHGLA----PKSWTDYLYLSVGGTLSNAGISGQAFHQGPQIT-NVHELDVVTGKGELLTC 246 (527)
Q Consensus 172 ~~~v~V~aGv~~~~l~~~l~~~Gl~----p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d-~V~~levV~~~G~v~~~ 246 (527)
+.+++|+||+.|.+|.+++.++||. ....| .||||++..|+ |. ||...+ .|+++++|+++|++++.
T Consensus 73 ~~~v~v~aG~~~~~l~~~~~~~Gl~GlE~l~giP----GtvGGai~mNA-Ga----yG~~i~d~l~~v~vv~~~G~~~~~ 143 (284)
T TIGR00179 73 GEYVHVGGGENWHKLVKYALKNGLSGLEFLAGIP----GTVGGAVIMNA-GA----YGVEISEVLVYATILLATGKTEWL 143 (284)
T ss_pred CCEEEEEcCCcHHHHHHHHHHCCCcccccCCCCC----chHHHHHHHhc-cc----chhehhheEEEEEEEeCCCCEEEE
Confidence 5689999999999999999999994 33333 39999999443 22 566555 68999999999999999
Q ss_pred CCCCCcchhhhhhcCC--CCe-EEEEeEEEeeecC
Q 042782 247 SEEQNSGLFHAVLGGL--GQF-GIITRARISLEPA 278 (527)
Q Consensus 247 ~~~~~~dL~~~~~Gs~--G~l-GIIt~atl~l~p~ 278 (527)
+.+ |+.+.+|.|. ... .||+++++++.+.
T Consensus 144 ~~~---~~~f~YR~S~f~~~~~~iil~a~~~l~~~ 175 (284)
T TIGR00179 144 TNE---QLGFGYRTSIFQHKYVGLVLKAEFQLTLG 175 (284)
T ss_pred EHH---HccccCCccccCCCCcEEEEEEEEEeccc
Confidence 774 8888998875 223 7999999999553
No 24
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.79 E-value=7.7e-19 Score=182.76 Aligned_cols=176 Identities=18% Similarity=0.252 Sum_probs=142.9
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCC
Q 042782 92 SRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEK 171 (527)
Q Consensus 92 ~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~ 171 (527)
..+.|.+++.|+|++|+++++++|++ +++|+.++|+|||+...+.+.+|+||+++ ++. ++++.+
T Consensus 29 iGg~A~~~~~p~s~edl~~~l~~a~~---~~~p~~vlGgGSNlLv~D~g~~GvVI~l~-~~~------------i~i~~~ 92 (363)
T PRK13903 29 VGGPARRLVTCTSTEELVAAVRELDA---AGEPLLVLGGGSNLVIADDGFDGTVVRVA-TRG------------VTVDCG 92 (363)
T ss_pred cCccceEEEEeCCHHHHHHHHHHHHH---CCCCEEEEeCCeeEeECCCCccEEEEEeC-CCc------------EEEeCC
Confidence 67889999999999999999999999 99999999999999866655679999997 576 667755
Q ss_pred CcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCcccccccccc-CCcccCCccccCCccCcEeEEEEEeCC-CcEEEcCCC
Q 042782 172 ERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLS-NAGISGQAFHQGPQITNVHELDVVTGK-GELLTCSEE 249 (527)
Q Consensus 172 ~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia-~~g~G~~s~~~G~~~d~V~~levV~~~-G~v~~~~~~ 249 (527)
+.+|+|+||+.|.++.+++.++||......+....||||++. |+|..+ +.+.|.|.++++++.+ |++++.+.
T Consensus 93 ~~~v~vgAG~~~~~l~~~a~~~GL~GlE~laGIPGTVGGAv~mNaGayG-----~ei~D~l~sV~vvd~~~G~~~~~~~- 166 (363)
T PRK13903 93 GGLVRAEAGAVWDDVVARTVEAGLGGLECLSGIPGSAGATPVQNVGAYG-----QEVSDTITRVRLLDRRTGEVRWVPA- 166 (363)
T ss_pred CCEEEEEcCCCHHHHHHHHHHcCCccccccCCCCcchhhHhhcCCChhH-----HHHhhhEeEEEEEECCCCEEEEEEH-
Confidence 679999999999999999999999743333334459999999 555433 3678999999999965 99999865
Q ss_pred CCcchhhhhhcCC--C-CeEEEEeEEEeeecCCceEEEEEEEeCCHHH
Q 042782 250 QNSGLFHAVLGGL--G-QFGIITRARISLEPAPKRVRWIRVLYSDFST 294 (527)
Q Consensus 250 ~~~dL~~~~~Gs~--G-~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~ 294 (527)
.|++|++|+|. + ..+|||+++|+|.|.... ..+.|.++..
T Consensus 167 --~el~f~YR~S~f~~~~~~IIl~a~f~L~~~~~~---~~~~y~~l~~ 209 (363)
T PRK13903 167 --ADLGFGYRTSVLKHSDRAVVLEVEFQLDPSGLS---APLRYGELAR 209 (363)
T ss_pred --HHcceeccccccCCCCCEEEEEEEEEEEcCCcc---cccchHHHHh
Confidence 49999999973 3 478999999999987421 2345665543
No 25
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.76 E-value=6.5e-18 Score=172.21 Aligned_cols=165 Identities=19% Similarity=0.191 Sum_probs=138.3
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCC-CCCCCCCCCCCcceEEeC
Q 042782 92 SRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSR-GRRLGSSTPAALRPHVYE 170 (527)
Q Consensus 92 ~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn-~~~~~~~~~~~~ii~id~ 170 (527)
..+.+..++.|+|++|+++++++|++ +++|+.++|+|||+...+.+.+|++|++++++ . +..+.
T Consensus 17 iGg~a~~~v~p~~~~dl~~~l~~~~~---~~ip~~vlG~GSNlL~~d~g~~GvVI~l~~~~~~------------i~~~~ 81 (295)
T PRK14649 17 IGGPARYFVEPTTPDEAIAAAAWAEQ---RQLPLFWLGGGSNLLVRDEGFDGLVARYRGQRWE------------LHEHG 81 (295)
T ss_pred eCceeeEEEEcCCHHHHHHHHHHHHH---CCCCEEEEecceeEEEeCCCcCeEEEEecCCCcE------------EEEeC
Confidence 67889999999999999999999999 99999999999999988887789999998754 4 45555
Q ss_pred CCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCcccccccccc-CCcccCCccccCCccCcEeEEEEEeCCCcEEEcCCC
Q 042782 171 KERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLS-NAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEE 249 (527)
Q Consensus 171 ~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia-~~g~G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~ 249 (527)
++.+++|+||+.|.++.+++.++||....+.+.-..||||++. |+|..+ +.+.|.|.++++++.+|++++.+++
T Consensus 82 ~~~~v~v~AG~~~~~l~~~~~~~GL~GlE~l~GIPGTvGGa~~mNaGayg-----~ei~d~l~~V~~~~~~g~~~~~~~~ 156 (295)
T PRK14649 82 DTAEVWVEAGAPMAGTARRLAAQGWAGLEWAEGLPGTIGGAIYGNAGCYG-----GDTATVLIRAWLLLNGSECVEWSVH 156 (295)
T ss_pred CcEEEEEEcCCcHHHHHHHHHHcCCccccccCCCCcchhHHHHhhccccc-----eEhheeEEEEEEEeCCCCEEEEeHH
Confidence 5458999999999999999999999744333333449999777 666544 6899999999999999999999764
Q ss_pred CCcchhhhhhcCC--CC--------eEEEEeEEEeeecCC
Q 042782 250 QNSGLFHAVLGGL--GQ--------FGIITRARISLEPAP 279 (527)
Q Consensus 250 ~~~dL~~~~~Gs~--G~--------lGIIt~atl~l~p~p 279 (527)
|+.+.+|.|. .. --||++++|+|.|..
T Consensus 157 ---el~f~YR~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 157 ---DFAYGYRTSVLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred ---HcCcccceeecccccccccccCCeEEEEEEEEECCCC
Confidence 8999999874 21 239999999998864
No 26
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.72 E-value=5.2e-17 Score=165.22 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=130.6
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCC
Q 042782 92 SRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEK 171 (527)
Q Consensus 92 ~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~ 171 (527)
..+.+.+++.|+|++|+++++++|+ .++|+.+.|+|||+.+.+.+.+|+||.+.+|+. ++++.
T Consensus 30 iGG~A~~~v~p~s~eel~~~~~~~~----~~~p~~vlG~GSNlLv~d~g~~gvVI~l~~~~~------------i~i~~- 92 (297)
T PRK14653 30 IGGPVPLFAIPNSTNGFIETINLLK----EGIEVKILGNGTNVLPKDEPMDFVVVSTERLDD------------IFVDN- 92 (297)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHh----cCCCEEEEcCCeeEEEecCCccEEEEEeCCcCc------------eEEeC-
Confidence 6788999999999999999999986 489999999999999988877899999978998 57763
Q ss_pred CcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCcccccccccc-CCcccCCccccCC-ccCcEeEEEEEeCCCcEEEcCCC
Q 042782 172 ERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLS-NAGISGQAFHQGP-QITNVHELDVVTGKGELLTCSEE 249 (527)
Q Consensus 172 ~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia-~~g~G~~s~~~G~-~~d~V~~levV~~~G~v~~~~~~ 249 (527)
..++|+||+.|.+|.+++.++||.....-.....||||++. |+|. ||. +.|.|.++++++ +|++++.+++
T Consensus 93 -~~v~v~AG~~l~~L~~~~~~~GL~GlE~l~gIPGTVGGAv~mNAGa------yG~ei~d~l~~V~~~d-~g~v~~~~~~ 164 (297)
T PRK14653 93 -DKIICESGLSLKKLCLVAAKNGLSGFENAYGIPGSVGGAVYMNAGA------YGWETAENIVEVVAYD-GKKIIRLGKN 164 (297)
T ss_pred -CEEEEeCCCcHHHHHHHHHHCCCcchhhhcCCchhHHHHHHHhCcc------CchhhheeEEEEEEEC-CCEEEEEchh
Confidence 57999999999999999999999522111112348999999 5543 566 999999999999 7889988764
Q ss_pred CCcchhhhhhcCC----CCeEEEEeEEEeeecCC
Q 042782 250 QNSGLFHAVLGGL----GQFGIITRARISLEPAP 279 (527)
Q Consensus 250 ~~~dL~~~~~Gs~----G~lGIIt~atl~l~p~p 279 (527)
|+-+.+|.|. +.+ |||+++|+|.|..
T Consensus 165 ---e~~f~YR~S~~~~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 165 ---EIKFSYRNSIFKEEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred ---hccccCccccCCCCCcE-EEEEEEEEEecCC
Confidence 6777777653 344 9999999999864
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=3e-15 Score=150.02 Aligned_cols=164 Identities=20% Similarity=0.256 Sum_probs=140.7
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCC
Q 042782 92 SRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEK 171 (527)
Q Consensus 92 ~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~ 171 (527)
..+.+..++.|++.+|+.++++++.+ .++|+.+.|+|+|+.-.+.+.+|++|.+.+++. ++++..
T Consensus 17 iGg~A~~~~~~~~~e~l~~~~~~~~~---~~~p~~ilG~GSNlLv~d~g~~gvvi~~~~~~~------------~~~~~~ 81 (291)
T COG0812 17 IGGPAEVLVEPRDIEELKAALKYAKA---EDLPVLILGGGSNLLVRDGGIGGVVIKLGKLNF------------IEIEGD 81 (291)
T ss_pred cCcceeEEEecCCHHHHHHHHHhhhh---cCCCEEEEecCceEEEecCCCceEEEEcccccc------------eeeecc
Confidence 67889999999999999999999999 999999999999988777777899999998887 666666
Q ss_pred CcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCcccccccccc-CCcccCCccccCCccCcEeEEEEEeCCCcEEEcCCCC
Q 042782 172 ERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLS-NAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEEQ 250 (527)
Q Consensus 172 ~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia-~~g~G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~~ 250 (527)
+..++|++|+.|.+|.+++.++||......+.-..||||++. |+|..+ +.+.|.+.++++++.+|++.+.+..
T Consensus 82 ~~~i~a~aG~~~~~l~~~~~~~gl~GlE~l~gIPGsvGgav~mNaGAyG-----~Ei~d~~~~v~~ld~~G~~~~l~~~- 155 (291)
T COG0812 82 DGLIEAGAGAPWHDLVRFALENGLSGLEFLAGIPGSVGGAVIMNAGAYG-----VEISDVLVSVEVLDRDGEVRWLSAE- 155 (291)
T ss_pred CCeEEEccCCcHHHHHHHHHHcCCcchhhhcCCCcccchhhhccCcccc-----cchheeEEEEEEEcCCCCEEEEEHH-
Confidence 669999999999999999999998622222222349999998 776655 6789999999999999999999775
Q ss_pred CcchhhhhhcCC--CCeEEEEeEEEeeecC
Q 042782 251 NSGLFHAVLGGL--GQFGIITRARISLEPA 278 (527)
Q Consensus 251 ~~dL~~~~~Gs~--G~lGIIt~atl~l~p~ 278 (527)
|+-++||-|. -...||++|+|+|.|-
T Consensus 156 --el~f~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 156 --ELGFGYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred --HhCcccccCcCCCCCEEEEEEEEEeCCC
Confidence 8999999986 3339999999999996
No 28
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.65 E-value=1e-15 Score=155.51 Aligned_cols=164 Identities=17% Similarity=0.128 Sum_probs=137.6
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcC-CCcEEEEcCCCCCCCCCCCCCCCcceEEeC
Q 042782 92 SRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQT-SNGVVIQMSGSRGRRLGSSTPAALRPHVYE 170 (527)
Q Consensus 92 ~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~-~~gvvIdl~~mn~~~~~~~~~~~~ii~id~ 170 (527)
..+.+..++.|+|.+|++++++++++ +++|+.+.|+|+|+...+.+ .+|+||.+.+|+. ++++.
T Consensus 29 iGG~A~~~~~p~~~~eL~~~l~~~~~---~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~~~~~------------i~~~~ 93 (302)
T PRK14650 29 IGGISKLFLTPKTIKDAEHIFKAAIE---EKIKIFILGGGSNILINDEEEIDFPIIYTGHLNK------------IEIHD 93 (302)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHHH---cCCCEEEEeceeEEEEECCCccceEEEEECCcCc------------EEEeC
Confidence 67889999999999999999999999 99999999999999887776 6899999867887 56654
Q ss_pred CCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCcccccccccc-CCcccCCccccCCccCcEeEEEEEeCCCcEEEcCCC
Q 042782 171 KERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLS-NAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEE 249 (527)
Q Consensus 171 ~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia-~~g~G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~ 249 (527)
..++|+||+.|.+|.+++.++||.....-+.-..||||++. |+|..+ +.+.|.|.++++++.+|++.+.+.+
T Consensus 94 --~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNAGayG-----~ei~d~l~sV~~~d~~g~~~~~~~~ 166 (302)
T PRK14650 94 --NQIVAECGTNFEDLCKFALQNELSGLEFIYGLPGTLGGAIWMNARCFG-----NEISEILDKITFIDEKGKTICKKFK 166 (302)
T ss_pred --CEEEEEeCCcHHHHHHHHHHcCCchhhhhcCCCcchhHHHHhhCCccc-----cchheeEEEEEEEECCCCEEEEEHH
Confidence 36999999999999999999999633222223349999999 776655 5789999999999999999988664
Q ss_pred CCcchhhhhhcCC--CCeEEEEeEEEeeecCCc
Q 042782 250 QNSGLFHAVLGGL--GQFGIITRARISLEPAPK 280 (527)
Q Consensus 250 ~~~dL~~~~~Gs~--G~lGIIt~atl~l~p~p~ 280 (527)
|+-+.+|.|. ..-.||++|+|+|.|.++
T Consensus 167 ---e~~f~YR~S~f~~~~~iIl~a~f~L~~~~~ 196 (302)
T PRK14650 167 ---KEEFKYKISPFQNKNTFILKATLNLKKGNK 196 (302)
T ss_pred ---HcCcccccccCCCCCEEEEEEEEEEcCCCH
Confidence 8888999875 223699999999998753
No 29
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.64 E-value=1.4e-15 Score=156.62 Aligned_cols=162 Identities=19% Similarity=0.221 Sum_probs=135.4
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCCCCCCCCCCcceEEe--
Q 042782 92 SRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSRGRRLGSSTPAALRPHVY-- 169 (527)
Q Consensus 92 ~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id-- 169 (527)
..+.+..++.|+|++|+++++++|++ +++|+.+.|+|+|+...+ +.+|++|.+ +++. ++++
T Consensus 17 iGG~A~~~~~p~~~~el~~~~~~~~~---~~~p~~vlG~GSNlLv~D-~~~g~vI~~-~~~~------------~~~~~~ 79 (334)
T PRK00046 17 IDARARHLVEAESEEQLLEALADARA---AGLPVLVLGGGSNVLFTE-DFDGTVLLN-RIKG------------IEVLSE 79 (334)
T ss_pred cCcEEeEEEeeCCHHHHHHHHHHHHH---cCCCEEEEeceEEEEECC-CCCEEEEEe-cCCc------------eEEEec
Confidence 67889999999999999999999999 999999999999998877 578999997 4887 5652
Q ss_pred CCC-cEEEEeCCccHHHHHHHHHhCCCCCCCcCCCcccccccccc-CCcccCCccccCCccCcEeEEEEEeCC-CcEEEc
Q 042782 170 EKE-RYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLS-NAGISGQAFHQGPQITNVHELDVVTGK-GELLTC 246 (527)
Q Consensus 170 ~~~-~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia-~~g~G~~s~~~G~~~d~V~~levV~~~-G~v~~~ 246 (527)
.++ ..++|+||+.|.+|.+++.++||....+-+.-..||||++. |+|..+ +.+.|.|.++++++.+ |++.+.
T Consensus 80 ~~~~~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNaGayG-----~ei~d~l~~V~v~d~~~g~~~~~ 154 (334)
T PRK00046 80 DDDAWYLHVGAGENWHDLVLWTLQQGMPGLENLALIPGTVGAAPIQNIGAYG-----VELKDVCDYVEALDLATGEFVRL 154 (334)
T ss_pred CCCeEEEEEEcCCcHHHHHHHHHHcCchhhHHhcCCCcchhHHHHhcCCcCc-----ccHheeEEEEEEEECCCCcEEEE
Confidence 222 37999999999999999999999633333333459999999 776655 6789999999999987 999998
Q ss_pred CCCCCcchhhhhhcCC--CC---eEEEEeEEEeeecC
Q 042782 247 SEEQNSGLFHAVLGGL--GQ---FGIITRARISLEPA 278 (527)
Q Consensus 247 ~~~~~~dL~~~~~Gs~--G~---lGIIt~atl~l~p~ 278 (527)
+++ |+.+.+|.|. .. --||++++|+|.|-
T Consensus 155 ~~~---e~~f~YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 155 SAA---ECRFGYRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred EHH---HcCcccccccCCCCCcCCEEEEEEEEEecCC
Confidence 774 8999999885 22 35999999999986
No 30
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.60 E-value=1.1e-15 Score=154.85 Aligned_cols=137 Identities=19% Similarity=0.228 Sum_probs=125.3
Q ss_pred ceEEeCCCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCCccccCCccCcEeEEEEEeCCCcEE
Q 042782 165 RPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELL 244 (527)
Q Consensus 165 ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G~v~ 244 (527)
|+++|.++.+|+|||+++++++.+++-+.|++.+..+...+.||||.|..-|.-+.|++||...+.+.+.|||++||+++
T Consensus 114 ILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aYEvVladGelv 193 (543)
T KOG1262|consen 114 ILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPELDDLTVGGLINGVGIESSSHKYGLFQHICTAYEVVLADGELV 193 (543)
T ss_pred HHhcchhcceEEecCCccHHHHHHHhccCCceeeeecccccceecceeeecccccccchhhhHHhhhheeEEEecCCeEE
Confidence 78899999999999999999999999999999888888899999999998888899999999999999999999999999
Q ss_pred EcCCC-CCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHH
Q 042782 245 TCSEE-QNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEY 301 (527)
Q Consensus 245 ~~~~~-~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~ 301 (527)
++.++ +++|||+++-.|.||+|..+.|++|+.|..+.++.-.+....+++..+-...
T Consensus 194 ~~t~dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip~~~l~e~c~k~~e 251 (543)
T KOG1262|consen 194 RVTPDNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIPVHGLDEYCKKITE 251 (543)
T ss_pred EecCCcccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEecccHHHHHHHHHh
Confidence 99887 7899999999999999999999999999998888777777777766554433
No 31
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.59 E-value=1e-14 Score=150.32 Aligned_cols=165 Identities=18% Similarity=0.122 Sum_probs=132.8
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCCCCCCCCCCcceEEe--
Q 042782 92 SRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSRGRRLGSSTPAALRPHVY-- 169 (527)
Q Consensus 92 ~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id-- 169 (527)
..+.+..++.|+|.+|++++++++++ +++|+.+.|+|+|+...+.+.+|+||.+.+|+. +++.
T Consensus 26 IGG~A~~~~~p~s~~el~~~l~~~~~---~~~p~~iLG~GSNlL~~D~g~~G~VI~l~~~~~------------i~i~~~ 90 (354)
T PRK14648 26 IGGAAQFWAEPRSCTQLRALIEEAQR---ARIPLSLIGGGSNVLIADEGVPGLMLSLRRFRS------------LHTQTQ 90 (354)
T ss_pred eCcEEEEEEeeCCHHHHHHHHHHHHH---cCCCEEEEeceeEEEEeCCCccEEEEEeCCcCc------------eEEeec
Confidence 67889999999999999999999999 999999999999999888777899999977887 4542
Q ss_pred -CCCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCcccccccccc-CCcccCCccccCCccCcEeEEEEE----------
Q 042782 170 -EKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLS-NAGISGQAFHQGPQITNVHELDVV---------- 237 (527)
Q Consensus 170 -~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia-~~g~G~~s~~~G~~~d~V~~levV---------- 237 (527)
.+...++|+||+.|.+|.+++.++||....+-+....||||++. |+|..+ +.+.|.|.+++++
T Consensus 91 ~~~~~~v~agAG~~~~~Lv~~~~~~gl~GlE~laGIPGTVGGAv~mNAGAyG-----~ei~d~l~~V~v~d~~~~~~~~~ 165 (354)
T PRK14648 91 RDGSVLVHAGAGLPVAALLAFCAHHALRGLETFAGLPGSVGGAAYMNARCYG-----RAIADCFHSARTLVLHPVRSRAK 165 (354)
T ss_pred cCCcEEEEEEeCCcHHHHHHHHHHcCCcchhhhcCCCcchhhHhhhcCCccc-----eEhhheEEEEEEEeccCcccccc
Confidence 23247999999999999999999999633332333459999999 766655 5788999999999
Q ss_pred ----------eCCCcE-------------EEcCCCCCcchhhhhhcCC--CC--------eEEEEeEEEeeecCC
Q 042782 238 ----------TGKGEL-------------LTCSEEQNSGLFHAVLGGL--GQ--------FGIITRARISLEPAP 279 (527)
Q Consensus 238 ----------~~~G~v-------------~~~~~~~~~dL~~~~~Gs~--G~--------lGIIt~atl~l~p~p 279 (527)
+.+|++ .+... .|+.+.+|.|. .. --||++++|+|.|..
T Consensus 166 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 166 ELPEVRKNAQDKRGECLGLDGGPFTCSSFQTVFA---RAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred cccccccccccCCCceecccccccccccceEecH---HHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 456776 33332 47888888874 21 249999999999864
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.42 E-value=2.5e-12 Score=129.05 Aligned_cols=151 Identities=19% Similarity=0.168 Sum_probs=121.2
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCC-CCCCCCCCCCCCCcceEEeC
Q 042782 92 SRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSG-SRGRRLGSSTPAALRPHVYE 170 (527)
Q Consensus 92 ~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~-mn~~~~~~~~~~~~ii~id~ 170 (527)
..+++..++ |+|++|+++++ ++|+.+.|+|+|+...+.+.+|+||.+.+ ++. ++++.
T Consensus 17 iGG~A~~~~-p~~~~~l~~~~---------~~p~~vlG~GSNlL~~D~g~~g~vI~l~~~~~~------------~~~~~ 74 (273)
T PRK14651 17 VGGPAELWT-VETHEQLAEAT---------EAPYRVLGGGSNLLVSDAGVPERVIRLGGEFAE------------WDLDG 74 (273)
T ss_pred cCceEEEEe-cCCHHHHHHHH---------CCCeEEEeceeEEEEcCCCcceEEEEECCccee------------EeECC
Confidence 567778888 99999999887 36999999999999888777899998865 554 44332
Q ss_pred CCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCcccccccccc-CCcccCCccccCCccCcEeEEEEEeCCCcEEEcCCC
Q 042782 171 KERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLS-NAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEE 249 (527)
Q Consensus 171 ~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia-~~g~G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~ 249 (527)
+|+||+.|.+|.+++.++||....+-+.-..||||++. |+|..+ +.+.|.|.++++++ +|++.+.+++
T Consensus 75 -----~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNaGayG-----~ei~d~l~~V~~~~-~g~~~~~~~~ 143 (273)
T PRK14651 75 -----WVGGGVPLPGLVRRAARLGLSGLEGLVGIPAQVGGAVKMNAGTRF-----GEMADALHTVEIVH-DGGFHQYSPD 143 (273)
T ss_pred -----EEECCCcHHHHHHHHHHCCCcchhhhcCCCcchhhHHHhhCCccc-----cChheeEEEEEEEE-CCCEEEEEHH
Confidence 69999999999999999999633322223359999999 666554 57899999999997 8999998764
Q ss_pred CCcchhhhhhcCC-CCeEEEEeEEEeeecC
Q 042782 250 QNSGLFHAVLGGL-GQFGIITRARISLEPA 278 (527)
Q Consensus 250 ~~~dL~~~~~Gs~-G~lGIIt~atl~l~p~ 278 (527)
|+.+.+|.|. -.-.||++++|+|.|.
T Consensus 144 ---e~~f~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 144 ---ELGFGYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred ---HccccccccCCCCCEEEEEEEEEECCC
Confidence 8889999875 2235999999999886
No 33
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=99.19 E-value=1.2e-11 Score=121.64 Aligned_cols=176 Identities=14% Similarity=0.274 Sum_probs=121.2
Q ss_pred CCceEEEEEEEeCCHHHHHHHHHHHHHcCCCCCCchhhhcccchhcchhhhhhccccccCCCCCcccccCCCCCceEEEE
Q 042782 278 APKRVRWIRVLYSDFSTFTRDQEYLISLHELPASQKFDYVEGFVIVDEGLINNWRSSFFSPRNPVKITSLGTDGGVLYCL 357 (527)
Q Consensus 278 ~p~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~p~~~e~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lll 357 (527)
+|+....+.+.|+|++++.+++..+++. + ..|+++|++|...+... .. ... ...+....+++++
T Consensus 1 lPe~~~~~~~~f~~~~~a~~~~~~i~~~-g-~~p~a~el~d~~~~~~~---~~-----~~~------~~~~~~~~~~llv 64 (248)
T PF02913_consen 1 LPEARATALVFFPSFEDAADAVRAIMQS-G-IIPSAIELLDSAALKLA---LE-----HWG------EPLPPEGGAVLLV 64 (248)
T ss_dssp --SEEEEEEEEESCHHHHHHHHCCCCHH-C-SSCCECCCCHHHHHHHH---HH-----SEE------ETSSTTTSEEEEE
T ss_pred CCcceEEEEEEcCCHHHHHHHHHHHHHc-C-CCceEEeeeCHHHHHHH---Hh-----hcC------CCccCCcccEEEE
Confidence 4888899999999999999999998887 4 68999999999776321 11 000 0234455688999
Q ss_pred EEeecCCCCChhhHHHHHH-HHHHHhhhcCCceeeccchhhhhhhhhhhcccHHHHhhhhcCCCc---------------
Q 042782 358 EITKNYDESTADTTDQEVE-SLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSKGLWEVPHP--------------- 421 (527)
Q Consensus 358 e~~~~~~~~~~~~~~~~~~-~ll~~l~~~~g~~~~~d~~~~~~~~~v~~~~~~~~~~~lW~~r~~--------------- 421 (527)
| ++|.+++.++++++ .+.+.+....+.- +..+.+......+|..|+.
T Consensus 65 ~----~~g~~~~~~~~~~~~~i~~~~~~~~~~~-------------~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~ 127 (248)
T PF02913_consen 65 E----FEGSDEEAVEEQLEAEIEEICKKYGGED-------------VVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPV 127 (248)
T ss_dssp E----CCCHHHCCHHHHHHHHHHHHHCTCTCCE-------------EEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEE
T ss_pred E----ECCCcHHHHHHHHHHHHHHHHhhcCCce-------------eEEeCCHHHHHhhhhhhhhhcccccccccccCCc
Confidence 9 56655566777777 6777665433321 1123334444566665541
Q ss_pred --ceecccCcccHHHHHHHHHHhhc----------CccCCCceEEeeCCCc---ccccccccCCChhhHHHHHHHhCCCC
Q 042782 422 --WLNLFIPKSRIADFDKGVFKGIL----------GNKTGGPILIYPMNKH---KWDNRSSVVTPDEDVFYLVAFLRSAL 486 (527)
Q Consensus 422 --~~dv~VP~s~l~~~~~~v~~~l~----------gh~g~G~ih~~p~~~~---~~~~~~~~~~p~~~v~~~v~~l~~~~ 486 (527)
..|++||+++++++++.+ ++++ +|+++|++|++++.+. +..++...+. ++++.++..+||++
T Consensus 128 ~~~~dv~vp~~~l~~~~~~~-~~~~~~~~~~~~~~gH~~~g~~h~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~gG~i 204 (248)
T PF02913_consen 128 WDTEDVAVPPSRLPEFLREI-RALLREYGLEVCHFGHAGDGNLHLYILFDPRDPEEPERAEALW--DELYELVLELGGSI 204 (248)
T ss_dssp EEEEEEESCHHHHHHHHHHH-HHHHHHCTEEEEEEEEEEECEEEEEEEEETTSHHHHHHHHHHH--HHHHHHHHHTT-BB
T ss_pred eeeeeecccchhhhhHHHhh-hhhhhhccccccceEEccCCeEEEEeecccchHHHHHHHHHHH--HHHHHHHHhccccc
Confidence 259999999999999998 4553 8999999999987432 2333443443 78899999999999
Q ss_pred CCC
Q 042782 487 DNG 489 (527)
Q Consensus 487 ~~~ 489 (527)
+..
T Consensus 205 s~e 207 (248)
T PF02913_consen 205 SAE 207 (248)
T ss_dssp SSS
T ss_pred ccc
Confidence 986
No 34
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.07 E-value=6.1e-10 Score=110.94 Aligned_cols=146 Identities=12% Similarity=0.034 Sum_probs=112.0
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCC
Q 042782 92 SRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEK 171 (527)
Q Consensus 92 ~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~ 171 (527)
..+++..++.|.+.+ + ++|+.+.|+|+|+...+.+.++++ -+.+++. ++++.
T Consensus 15 iGG~A~~~~~~~~~~-l-------------~~p~~vlG~GSNlLv~D~g~~~vv-~~~~~~~------------~~~~~- 66 (257)
T PRK13904 15 IGPPLEVLVLEEIDD-F-------------SQDGQIIGGANNLLISPNPKNLAI-LGKNFDY------------IKIDG- 66 (257)
T ss_pred ECceEEEEEEechhh-h-------------CCCeEEEeceeEEEEecCCccEEE-EccCcCe------------EEEeC-
Confidence 678888999998887 5 479999999999887776644444 3456777 66654
Q ss_pred CcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCcccccccccc-CCcccCCccccCCccCcEeEEEEEeCCCcEEEcCCCC
Q 042782 172 ERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLS-NAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEEQ 250 (527)
Q Consensus 172 ~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia-~~g~G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~~ 250 (527)
..++|+||+.|.+|.+++.++||....+-..-..||||++. |+|..+ +.+.|.|.++++++ | +.++
T Consensus 67 -~~v~~~AG~~l~~l~~~~~~~gl~GlE~l~gIPGtVGGAv~mNaGa~g-----~ei~d~l~~V~~~~--~---~~~~-- 133 (257)
T PRK13904 67 -ECLEIGGATKSGKIFNYAKKNNLGGFEFLGKLPGTLGGLVKMNAGLKE-----YEISNNLESICTNG--G---WIEK-- 133 (257)
T ss_pred -CEEEEEcCCcHHHHHHHHHHCCCchhhhhcCCCccHHHHHHhcCCcCc-----cchheeEEEEEEEe--e---EEeH--
Confidence 47999999999999999999999633322223359999999 666555 56889999999998 4 3333
Q ss_pred CcchhhhhhcCCCCeEEEEeEEEeeecCCc
Q 042782 251 NSGLFHAVLGGLGQFGIITRARISLEPAPK 280 (527)
Q Consensus 251 ~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~ 280 (527)
.|+.+.+|.|.=. .||++++|+|.|..+
T Consensus 134 -~e~~f~YR~S~~~-~iIl~a~f~l~~~~~ 161 (257)
T PRK13904 134 -EDIGFGYRSSGIN-GVILEARFKKTHGFD 161 (257)
T ss_pred -HHCcccccCcCCC-cEEEEEEEEECCCCH
Confidence 4888899987522 499999999999653
No 35
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=96.89 E-value=0.00068 Score=63.95 Aligned_cols=103 Identities=17% Similarity=0.125 Sum_probs=64.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCC---cCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCCC
Q 042782 96 PWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQA---QTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEKE 172 (527)
Q Consensus 96 P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~---~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~ 172 (527)
+..+++|+|.+|+.++++.- . ...+.+|||++...- ......+||++++... +.++.+ +
T Consensus 2 ~~~~~~P~sl~ea~~ll~~~-----~--~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL---------~~I~~~--~ 63 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLAKG-----P--DARIVAGGTDLGVQMREGILSPDVLIDLSRIPEL---------NGISED--D 63 (171)
T ss_dssp S-EEEE-SSHHHHHHHHHHG-----T--TEEEESS-TTHHHHHHTTS---SEEEEGTTSGGG---------G-EEEE--T
T ss_pred CeEEEccCCHHHHHHHHhcC-----C--CCEEEeCCCccchhcccCccccceEEEeEEeccc---------ccEEEe--c
Confidence 45689999999999999922 2 367889999964211 1135689999886441 025555 5
Q ss_pred cEEEEeCCccHHHHHHHHH---------hCCCCCCCcCCCccccccccccCCc
Q 042782 173 RYVDVWGGELWIDVLRSTL---------EHGLAPKSWTDYLYLSVGGTLSNAG 216 (527)
Q Consensus 173 ~~v~V~aGv~~~~l~~~l~---------~~Gl~p~~~~~~~~~TVGG~ia~~g 216 (527)
..++++|++++.++.+.-. ++-....+++-.+.+|+||+++++.
T Consensus 64 ~~l~IGA~vtl~~l~~~~~~~~~~p~L~~~~~~ias~~IRn~aTiGGNl~~~~ 116 (171)
T PF00941_consen 64 GGLRIGAAVTLSELEESPLIQQYFPALAQAARRIASPQIRNRATIGGNLCNAS 116 (171)
T ss_dssp SEEEEETTSBHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHTT-BHHHHHHHTB
T ss_pred cEEEECCCccHHHHhhcchhhhhHHHHHHHHHHhCCHhHeeeeeeccccccCc
Confidence 6899999999999887611 1111123344446689999998764
No 36
>PRK09799 putative oxidoreductase; Provisional
Probab=96.70 E-value=0.003 Score=63.64 Aligned_cols=140 Identities=12% Similarity=0.076 Sum_probs=85.8
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCC-CcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEE
Q 042782 98 AVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQ-AQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVD 176 (527)
Q Consensus 98 ~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~-~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~ 176 (527)
.+++|+|.+|..++++. ++-...+.+|||.+.-. ......++||++++ .. -.+..++..++
T Consensus 4 ~y~~P~sl~Ea~~ll~~------~~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~i-eL-----------~~I~~~~~~l~ 65 (258)
T PRK09799 4 QFFRPDSVEQALELKRR------YQDEAVWFAGGSKLNATPTRTDKKIAISLQDL-EL-----------DWIEWDNGALR 65 (258)
T ss_pred cEeCCCCHHHHHHHHHh------CCCCCEEEecCCChHhhhCCCCCCEEEEcCCC-CC-----------CeEEecCCEEE
Confidence 36789999999998763 32225678999998422 11235789999976 41 12333456899
Q ss_pred EeCCccHHHHHHHHHhC-CC-----CCCCcCCCccccccccccCCcccCCccccCCccCc-----EeEEEEEeCCCcEEE
Q 042782 177 VWGGELWIDVLRSTLEH-GL-----APKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITN-----VHELDVVTGKGELLT 245 (527)
Q Consensus 177 V~aGv~~~~l~~~l~~~-Gl-----~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~-----V~~levV~~~G~v~~ 245 (527)
++|++++.++.+...-. .| ...++.-.+..|+||+|.++.- ..|. .++.+|+..+|+.+.
T Consensus 66 IGA~vT~~~l~~~~~~~~~L~~a~~~vas~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vp 136 (258)
T PRK09799 66 IGAMSRLQPLRDARFIPAALREALGFVYSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLS 136 (258)
T ss_pred EccCCcHHHHHhCcccHHHHHHHHHHhCCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEe
Confidence 99999999987643211 12 1234445567899999997742 1232 334455555554332
Q ss_pred cCCCCCcchhhhhhcCCCCeEEEEeEEEe
Q 042782 246 CSEEQNSGLFHAVLGGLGQFGIITRARIS 274 (527)
Q Consensus 246 ~~~~~~~dL~~~~~Gs~G~lGIIt~atl~ 274 (527)
. -..+.|..+ .|||++.+.
T Consensus 137 l--------~~f~~g~~~--Eil~~I~iP 155 (258)
T PRK09799 137 I--------EDYLACPCD--RLLTEIIIP 155 (258)
T ss_pred H--------HHhcCCCCC--cEEEEEEcC
Confidence 2 222344333 589987664
No 37
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.69 E-value=0.0038 Score=68.13 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=70.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCC---cCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCC
Q 042782 95 EPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQA---QTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEK 171 (527)
Q Consensus 95 ~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~---~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~ 171 (527)
....+++|+|.+|+.++++. +. ...+.+|||++.-.- ......+||++++...+ .++. +
T Consensus 191 ~~~~~~~P~sl~Ea~~ll~~------~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~---------~I~~--~ 252 (467)
T TIGR02963 191 GGERFIAPTTLDDLAALKAA------HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELK---------RIEE--T 252 (467)
T ss_pred CCceEECCCCHHHHHHHHhh------CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhc---------cEEE--c
Confidence 34568999999999998864 22 246789999974221 11346899999865410 1444 4
Q ss_pred CcEEEEeCCccHHHHHHHHHhC--CC-----CCCCcCCCccccccccccCCc
Q 042782 172 ERYVDVWGGELWIDVLRSTLEH--GL-----APKSWTDYLYLSVGGTLSNAG 216 (527)
Q Consensus 172 ~~~v~V~aGv~~~~l~~~l~~~--Gl-----~p~~~~~~~~~TVGG~ia~~g 216 (527)
+..++++|++++.++.+.+.++ .| ...++.-.+..|+||+|+++.
T Consensus 253 ~~~l~IGA~vT~~el~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~as 304 (467)
T TIGR02963 253 DDGIEIGAAVTLTDAYAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGS 304 (467)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCC
Confidence 4689999999999987655433 12 133444556789999999874
No 38
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=96.44 E-value=0.0056 Score=61.64 Aligned_cols=100 Identities=14% Similarity=0.101 Sum_probs=65.1
Q ss_pred EEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCC-CcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEE
Q 042782 99 VLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQ-AQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDV 177 (527)
Q Consensus 99 Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~-~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V 177 (527)
+++|+|.+|..++++. ++-.-.+.+|||++.-. ......++||++++ ..+ .|+. ++..+++
T Consensus 4 y~~P~sl~Ea~~ll~~------~~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-eL~---------~I~~--~~~~l~I 65 (257)
T TIGR03312 4 FFRPESTIQALELKKR------HTGVAVWFAGGSKLNATPTRTDKKVAISLDKL-ALD---------KIEL--QGGALHI 65 (257)
T ss_pred eECCCCHHHHHHHHHh------CCCCCEEEecCcchhhhhcccCCCEEEEcCCC-CCC---------cEEe--cCCEEEE
Confidence 6789999999988764 22124568999998522 22234689999876 410 1443 4468999
Q ss_pred eCCccHHHHHHHHH-hCCC-----CCCCcCCCccccccccccCCc
Q 042782 178 WGGELWIDVLRSTL-EHGL-----APKSWTDYLYLSVGGTLSNAG 216 (527)
Q Consensus 178 ~aGv~~~~l~~~l~-~~Gl-----~p~~~~~~~~~TVGG~ia~~g 216 (527)
+|++++.++.+... +..| ...++.-.+..|+||+++|+.
T Consensus 66 GA~~t~~~l~~~~~~~~~L~~aa~~va~~qIRN~gTlGGNl~~a~ 110 (257)
T TIGR03312 66 GAMCHLQSLIDNELTPAALKEALGFVYSRHIRNQATIGGEIAAFQ 110 (257)
T ss_pred EeCCcHHHHHhCcchHHHHHHHHHHhCCHHHhccccHHHHhhcCC
Confidence 99999999865211 0011 123344456789999999774
No 39
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=95.49 E-value=0.018 Score=59.02 Aligned_cols=102 Identities=9% Similarity=0.113 Sum_probs=66.4
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCC---CcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcE
Q 042782 98 AVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQ---AQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERY 174 (527)
Q Consensus 98 ~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~---~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~ 174 (527)
.+++|+|.+|..++++. ++ ..++.+|||++.-. .......+||++++...+ .|+.. ++..
T Consensus 6 ~~~~P~sl~Ea~~ll~~------~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~---------~I~~~-~~~~ 68 (291)
T PRK09971 6 EYHEAATLEEAIELLAD------NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELR---------GITLA-EDGS 68 (291)
T ss_pred ceeCCCCHHHHHHHHHh------CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhh---------CeEec-CCCE
Confidence 58889999999988764 21 24678999997421 111357899999865410 13332 3457
Q ss_pred EEEeCCccHHHHHHH--HHhC-C-C-----CCCCcCCCccccccccccCCc
Q 042782 175 VDVWGGELWIDVLRS--TLEH-G-L-----APKSWTDYLYLSVGGTLSNAG 216 (527)
Q Consensus 175 v~V~aGv~~~~l~~~--l~~~-G-l-----~p~~~~~~~~~TVGG~ia~~g 216 (527)
++++|++++.++.+. +.++ . | ...++.-.+..|+||+|.++.
T Consensus 69 l~IGA~vt~~~l~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~ 119 (291)
T PRK09971 69 IRIGAATTFTQIIEDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGA 119 (291)
T ss_pred EEEEeCCcHHHHhcChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCC
Confidence 999999999998751 1111 1 1 123444456789999999764
No 40
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=95.05 E-value=0.014 Score=58.92 Aligned_cols=96 Identities=10% Similarity=0.050 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCC----cCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEE
Q 042782 102 PASADDITRVVKAAYESEAHGFTISARGHGHSINGQA----QTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDV 177 (527)
Q Consensus 102 P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~----~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V 177 (527)
|+|.+|+.++++... ...+.+|||.+.-+- ......+||++++... -.+..++..+++
T Consensus 1 P~sl~ea~~ll~~~~-------~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL-----------~~I~~~~~~l~I 62 (264)
T TIGR03199 1 PAALDEAWSLLEKAP-------DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDEL-----------KGISTSDTHVSI 62 (264)
T ss_pred CCCHHHHHHHHHhCC-------CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhh-----------CcEEecCCEEEE
Confidence 789999988887421 246789999974221 1224789999987651 234445578999
Q ss_pred eCCccHHHHHHH--HHhC--CC-----CCCCcCCCccccccccccCC
Q 042782 178 WGGELWIDVLRS--TLEH--GL-----APKSWTDYLYLSVGGTLSNA 215 (527)
Q Consensus 178 ~aGv~~~~l~~~--l~~~--Gl-----~p~~~~~~~~~TVGG~ia~~ 215 (527)
+|++++.++.+. +.++ .| ...++.-.+..|+||+|+++
T Consensus 63 GA~vt~~~l~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 63 GALTTLNECRKNPLIKRALPCFVDAASAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred ecCCcHHHHhhChHhHhHhHHHHHHHHHhcCHHHhcceecHHhccCc
Confidence 999999998642 1110 11 12344445678999999876
No 41
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=95.03 E-value=0.019 Score=59.66 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=65.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCC---cCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCc
Q 042782 97 WAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQA---QTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEKER 173 (527)
Q Consensus 97 ~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~---~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~ 173 (527)
..+++|+|.+|..++++. ++ .-.+.+|||++.-.. ......+||+.++...+ .++. .+.
T Consensus 5 f~~~~P~sl~eA~~ll~~------~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~---------~I~~--~~~ 66 (321)
T TIGR03195 5 FRTLRPASLADAVAALAA------HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIA---------QLST--LAD 66 (321)
T ss_pred ceEECCCCHHHHHHHHhh------CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhc---------cEEe--cCC
Confidence 358899999999988764 22 135789999863221 12347899998765410 1444 346
Q ss_pred EEEEeCCccHHHHHHHHH--h-CC-C-----CCCCcCCCccccccccccCC
Q 042782 174 YVDVWGGELWIDVLRSTL--E-HG-L-----APKSWTDYLYLSVGGTLSNA 215 (527)
Q Consensus 174 ~v~V~aGv~~~~l~~~l~--~-~G-l-----~p~~~~~~~~~TVGG~ia~~ 215 (527)
.++++|++++.++.+.-. + .. | ...++.-.+..|+||+|.++
T Consensus 67 ~l~IGA~vT~~~l~~~~~i~~~~p~L~~a~~~ias~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 67 GLRIGAGVTLAALAEDALVRTRWPALAQAARAVAGPTHRAAATLGGNLCLD 117 (321)
T ss_pred EEEEeccCcHHHHhhChhhHhHhHHHHHHHHHhCCHHHhCceecHHhhhcc
Confidence 899999999999855211 1 11 1 13344455678999999964
No 42
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=93.27 E-value=0.17 Score=62.12 Aligned_cols=102 Identities=11% Similarity=0.001 Sum_probs=69.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCC---cCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCc
Q 042782 97 WAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQA---QTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEKER 173 (527)
Q Consensus 97 ~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~---~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~ 173 (527)
...++|+|.+|+.++++. +. .-++.+|||++.-.- ......+||+++.... -.+..++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~------~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL-----------~~i~~~~~ 298 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK------YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEEL-----------SVVNHTGD 298 (1330)
T ss_pred ceEECCCCHHHHHHHHHh------CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhh-----------hcEEEcCC
Confidence 458899999999998764 21 245788999984321 1223589999886651 22333456
Q ss_pred EEEEeCCccHHHHHHHHHhC---------C----C-----CCCCcCCCccccccccccCCc
Q 042782 174 YVDVWGGELWIDVLRSTLEH---------G----L-----APKSWTDYLYLSVGGTLSNAG 216 (527)
Q Consensus 174 ~v~V~aGv~~~~l~~~l~~~---------G----l-----~p~~~~~~~~~TVGG~ia~~g 216 (527)
.++++|++++.++.+.+.+. . | ...++.-.+..|+||+|+|+.
T Consensus 299 ~l~IGA~vT~~el~~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~as 359 (1330)
T TIGR02969 299 GLTLGAGLSLAQVKDILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRH 359 (1330)
T ss_pred EEEEeccccHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCC
Confidence 89999999999998864422 1 1 133444556789999999875
No 43
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=92.81 E-value=0.22 Score=50.72 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=69.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCC---cCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCCC
Q 042782 96 PWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQA---QTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEKE 172 (527)
Q Consensus 96 P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~---~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~ 172 (527)
+..+.+|.|.+|...+++. .+ -..+.+|||++.-.. .....-+||++++... ...+..++
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~------~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~----------~~~~~~~g 65 (284)
T COG1319 3 NFEYYRPASVEEALNLLAR------AP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDEL----------LGIVTTEG 65 (284)
T ss_pred ceEEECCCCHHHHHHHHHh------CC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhh----------hceEeecC
Confidence 5568999999999888874 33 477899999976322 2245678999887420 11223345
Q ss_pred cEEEEeCCccHHHHHHHHHhCCCC---------CCCcCCCccccccccccCCc
Q 042782 173 RYVDVWGGELWIDVLRSTLEHGLA---------PKSWTDYLYLSVGGTLSNAG 216 (527)
Q Consensus 173 ~~v~V~aGv~~~~l~~~l~~~Gl~---------p~~~~~~~~~TVGG~ia~~g 216 (527)
+.++++|-+++.++.+--.-+... ..++.-.+.+|+||++.++.
T Consensus 66 ~~l~IGA~vt~~ei~~~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~ 118 (284)
T COG1319 66 GSLRIGALVTLTEIARHPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNAD 118 (284)
T ss_pred CEEEEeecccHHHHHhChhhhhhchHHHHHHHHhcChhhcceeeecchhccCC
Confidence 679999999999986432211111 33455556789999988764
No 44
>PLN02906 xanthine dehydrogenase
Probab=92.81 E-value=0.11 Score=63.54 Aligned_cols=103 Identities=9% Similarity=-0.028 Sum_probs=69.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCC---cCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCCC
Q 042782 96 PWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQA---QTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEKE 172 (527)
Q Consensus 96 P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~---~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~ 172 (527)
...+++|+|.+|+.++++... + -++.+|||++.-.- .....++||++++... -.+..++
T Consensus 228 ~~~~~~P~tl~ea~~ll~~~~-----~--a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL-----------~~I~~~~ 289 (1319)
T PLN02906 228 GLTWYRPTSLQHLLELKAEYP-----D--AKLVVGNTEVGIEMRFKNAQYPVLISPTHVPEL-----------NAIKVKD 289 (1319)
T ss_pred CceEECcCCHHHHHHHHHhCC-----C--CEEEEcCchhHHHhhhccCCCCeEEECCCChhh-----------hcEEecC
Confidence 345889999999999876421 2 35788999984321 1235789999986541 1233345
Q ss_pred cEEEEeCCccHHHHHHHHHhCC-------------C-----CCCCcCCCccccccccccCCc
Q 042782 173 RYVDVWGGELWIDVLRSTLEHG-------------L-----APKSWTDYLYLSVGGTLSNAG 216 (527)
Q Consensus 173 ~~v~V~aGv~~~~l~~~l~~~G-------------l-----~p~~~~~~~~~TVGG~ia~~g 216 (527)
..++++|++++.++.+.+.+.= | ...++.-.+..|+||+|+|+.
T Consensus 290 ~~l~IGA~vT~~el~~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~as 351 (1319)
T PLN02906 290 DGLEIGAAVRLSELQNLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTAS 351 (1319)
T ss_pred CEEEEecCCcHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCC
Confidence 6899999999999988644320 0 023444556789999999874
No 45
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=92.30 E-value=0.28 Score=51.19 Aligned_cols=128 Identities=13% Similarity=0.090 Sum_probs=74.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCc---CCCcEEEEcCCCCCCCCCCCCCCCcceEEe
Q 042782 93 RAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQ---TSNGVVIQMSGSRGRRLGSSTPAALRPHVY 169 (527)
Q Consensus 93 ~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~---~~~gvvIdl~~mn~~~~~~~~~~~~ii~id 169 (527)
......++.|.+.+|.+.++.. . -+ .++..|+|.+.-... ..-..||-..++.. .-+++
T Consensus 200 ~~~~~r~~~P~~l~D~a~l~aa--~---P~--AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~e-----------L~~i~ 261 (493)
T COG4630 200 GSGDDRFIVPATLADFADLLAA--H---PG--ATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAE-----------LRRIE 261 (493)
T ss_pred cCCCceeEeeccHHHHHHHHhh--C---CC--CEEEecCcchhhHHHHHHhhcCCeEEecchhh-----------hheee
Confidence 3445568999999999998864 2 33 445556776532211 11223444444443 23345
Q ss_pred CCCcEEEEeCCccHHHHHHHHHhC-C----CC--CCCcCCCccccccccccCCcccCCccccCCccCcEeEEEEEeCCCc
Q 042782 170 EKERYVDVWGGELWIDVLRSTLEH-G----LA--PKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGE 242 (527)
Q Consensus 170 ~~~~~v~V~aGv~~~~l~~~l~~~-G----l~--p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G~ 242 (527)
.....++++||+++.+....+..+ - |+ ..+..-.+..|+||+|+|++-=|-+ +-.=-.++.++++-.|+
T Consensus 262 ~~~~~l~iGAgvt~t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPIGDt----PPaLIALgA~ltLr~g~ 337 (493)
T COG4630 262 VSTGGLEIGAGVTYTQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSPIGDT----PPALIALGATLTLRSGD 337 (493)
T ss_pred ecCCcEEEccCccHHHHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCcCCCC----CchhhhcCcEEEEEecC
Confidence 556799999999999998888743 1 11 2233334567999999987521111 11112456677766554
No 46
>PLN00192 aldehyde oxidase
Probab=92.10 E-value=0.35 Score=59.50 Aligned_cols=107 Identities=11% Similarity=0.060 Sum_probs=70.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCC-CcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcE
Q 042782 96 PWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQ-AQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERY 174 (527)
Q Consensus 96 P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~-~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~ 174 (527)
....++|.|.+|+.++++.... .+-.-++..|||++.-. ......++||++++... -.+..++..
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~---~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~EL-----------~~I~~~~~~ 298 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNF---DGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPEL-----------SMIRRDEKG 298 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCC---CCCCeEEEEeCCcceeeeccCCCCeEEEcCCChhh-----------hcEEecCCE
Confidence 4568999999999998764210 01125567899997421 12234789999886541 223334468
Q ss_pred EEEeCCccHHHHHHHHHhCC----CC---------CCCcCCCccccccccccCCc
Q 042782 175 VDVWGGELWIDVLRSTLEHG----LA---------PKSWTDYLYLSVGGTLSNAG 216 (527)
Q Consensus 175 v~V~aGv~~~~l~~~l~~~G----l~---------p~~~~~~~~~TVGG~ia~~g 216 (527)
++++|++++.++.+.+...- .+ ..++.-.+..|+||+|+|+.
T Consensus 299 l~IGA~vTl~el~~~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~As 353 (1344)
T PLN00192 299 IEIGAVVTISKAIEALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMAQ 353 (1344)
T ss_pred EEEeecCcHHHHHHHHHhhccccchHHHHHHHHHHhcChhhccceechhhhcccC
Confidence 99999999999887655431 11 23444456789999999874
No 47
>PF11278 DUF3079: Protein of unknown function (DUF3079); InterPro: IPR021430 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=63.45 E-value=2.5 Score=31.09 Aligned_cols=14 Identities=29% Similarity=0.869 Sum_probs=11.3
Q ss_pred eecccchhhHHHhh
Q 042782 18 VLCWCCLNYLAIKL 31 (527)
Q Consensus 18 ~~~~~~~~~~~~~~ 31 (527)
-+||+|++||....
T Consensus 14 RiCWGCD~YC~a~~ 27 (52)
T PF11278_consen 14 RICWGCDRYCPADS 27 (52)
T ss_pred ceeeccccccChhh
Confidence 47999999997643
No 48
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=40.43 E-value=57 Score=32.05 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=40.6
Q ss_pred CccCCCceEEeeCCCcccccccccCCChhhHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHcCCCceeeCCCC
Q 042782 445 GNKTGGPILIYPMNKHKWDNRSSVVTPDEDVFYLVAFLRSALDNGEEMQSLEYLNHQNRQILKFCDEAGIKAKQYLPHY 523 (527)
Q Consensus 445 gh~g~G~ih~~p~~~~~~~~~~~~~~p~~~v~~~v~~l~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~k~yl~~~ 523 (527)
.+.|...+-++|+...+..+. + ..+....+..+..+.+..|-+ ++-.++|++.|.. .|.+++.||-
T Consensus 145 ~dmG~~SiKffPM~Gl~~leE---~---~avA~aca~~g~~lEPTGGId-----l~Nf~~I~~i~ld--aGv~kviPHI 210 (236)
T TIGR03581 145 KDMGGSSVKFFPMGGLKHLEE---Y---AAVAKACAKHGFYLEPTGGID-----LDNFEEIVQIALD--AGVEKVIPHV 210 (236)
T ss_pred HHcCCCeeeEeecCCcccHHH---H---HHHHHHHHHcCCccCCCCCcc-----HHhHHHHHHHHHH--cCCCeecccc
Confidence 455667889999976442121 1 233444555555553332332 3444789999986 5899999993
No 49
>PRK10858 nitrogen regulatory protein P-II 1; Provisional
Probab=40.03 E-value=26 Score=30.67 Aligned_cols=40 Identities=13% Similarity=0.388 Sum_probs=32.8
Q ss_pred CCcceecccCcccHHHHHHHHHHhhc--CccCCCceEEeeCCC
Q 042782 419 PHPWLNLFIPKSRIADFDKGVFKGIL--GNKTGGPILIYPMNK 459 (527)
Q Consensus 419 r~~~~dv~VP~s~l~~~~~~v~~~l~--gh~g~G~ih~~p~~~ 459 (527)
++..++++|+.+.+.+.++.+. +.. |+.|||-|.+.|..+
T Consensus 57 pK~~ieivv~D~~v~~vv~~I~-~~a~TG~~GDGkIfV~pV~~ 98 (112)
T PRK10858 57 PKVKIEIVVPDDIVDTCVDTII-RTAQTGKIGDGKIFVFDVAR 98 (112)
T ss_pred eeEEEEEEEChHhHHHHHHHHH-HHhccCCCCCcEEEEEEhhh
Confidence 5566899999999999888874 443 899999999999854
No 50
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=36.78 E-value=3.1e+02 Score=31.05 Aligned_cols=141 Identities=17% Similarity=0.225 Sum_probs=80.0
Q ss_pred cCC-HHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCC--CCCCCCCCCCCCCc---ceEEeCCCcEE
Q 042782 102 PAS-ADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSG--SRGRRLGSSTPAAL---RPHVYEKERYV 175 (527)
Q Consensus 102 P~s-~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~--mn~~~~~~~~~~~~---ii~id~~~~~v 175 (527)
|.+ .++|.+-++.+.+ ++-++....+-.+....-+| ..|+||-|- |-+-.=-.-++++. ...+-|+..
T Consensus 308 p~~~~~eI~a~i~~~~~---~~P~laMVnSdkGITNLHvP-sDVIIDASMPAmIR~~GkmW~~dG~~~Dt~avIPD~s-- 381 (741)
T TIGR00178 308 PAAQQEEIEADLQAVYA---QRPELAMVNSDKGITNLHVP-SDVIVDASMPAMIRASGKMWGPDGKLKDTKAVIPDRC-- 381 (741)
T ss_pred ChhhHHHHHHHHHHHHh---hCCCEEEeccCCCccccCCC-cCeEEecCcHHHHhccCCccCCCCCcccceeecCCcc--
Confidence 444 4679999999998 88888888777766666666 678998652 21100000122221 011112222
Q ss_pred EEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcc-cCCccccCCccCcE-----eEEEEEeCCCcEEEcCCC
Q 042782 176 DVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGI-SGQAFHQGPQITNV-----HELDVVTGKGELLTCSEE 249 (527)
Q Consensus 176 ~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~-G~~s~~~G~~~d~V-----~~levV~~~G~v~~~~~~ 249 (527)
.||+ ..++.+.+.++|-+-| |--|++.|.|- -..+-.||+.--.. =.++||+.+|+++..-.-
T Consensus 382 --YA~v-Yq~~I~~ck~nGafDp--------~TmGsV~NVGLMAqKAEEYGSHdkTFei~~~G~v~Vvd~~G~vl~eh~V 450 (741)
T TIGR00178 382 --YAGV-YQVVIEDCKQNGAFDP--------TTMGTVPNVGLMAQKAEEYGSHDKTFQIPADGVVRVVDSSGEVLLEQSV 450 (741)
T ss_pred --chHH-HHHHHHHHHhcCCCCc--------ccccCCcchhHhHHHHHHhcCCCcceecCCCceEEEEeCCCCEEEEeec
Confidence 2343 4567788999997622 34456666543 11233466542111 136788999998876555
Q ss_pred CCcchhhhhh
Q 042782 250 QNSGLFHAVL 259 (527)
Q Consensus 250 ~~~dL~~~~~ 259 (527)
+.-|+|+++.
T Consensus 451 e~GDIwRmcq 460 (741)
T TIGR00178 451 EAGDIWRMCQ 460 (741)
T ss_pred cCCcchhhhh
Confidence 5557776543
No 51
>PRK10665 nitrogen regulatory protein P-II 2; Provisional
Probab=33.83 E-value=38 Score=29.67 Aligned_cols=41 Identities=12% Similarity=0.275 Sum_probs=33.3
Q ss_pred CCCcceecccCcccHHHHHHHHHHhhc--CccCCCceEEeeCCC
Q 042782 418 VPHPWLNLFIPKSRIADFDKGVFKGIL--GNKTGGPILIYPMNK 459 (527)
Q Consensus 418 ~r~~~~dv~VP~s~l~~~~~~v~~~l~--gh~g~G~ih~~p~~~ 459 (527)
+++..++++||.+.+.+.++.+. +.. |+.|||-|.+.|..+
T Consensus 56 ~~k~~ieivv~de~ve~vv~~I~-~~a~TG~~GDGkIfV~pV~~ 98 (112)
T PRK10665 56 LPKVKIDVAIADDQLDEVIDIIS-KAAYTGKIGDGKIFVAELQR 98 (112)
T ss_pred cceEEEEEEEChHhHHHHHHHHH-HHhccCCCCCcEEEEEEhhh
Confidence 45567899999999998888774 443 889999999999864
No 52
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=33.29 E-value=85 Score=23.42 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=27.5
Q ss_pred eEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHH
Q 042782 265 FGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYL 302 (527)
Q Consensus 265 lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l 302 (527)
+|.|..+.+...+.........+.|.+.+++.+++..+
T Consensus 22 ~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l 59 (70)
T PF00076_consen 22 FGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEEL 59 (70)
T ss_dssp TSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred hhhcccccccccccccccceEEEEEcCHHHHHHHHHHc
Confidence 45556665655555667788899999999988876654
No 53
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=31.88 E-value=64 Score=35.84 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=27.7
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEE
Q 042782 93 RAEPWAVLHPASADDITRVVKAAYESEAHGFTISAR 128 (527)
Q Consensus 93 ~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~r 128 (527)
.+.|-..++|.|.++|.++++.|++ .-..||+.+
T Consensus 149 ~G~~yv~fKPGtIeqI~svi~IAka--~P~~pIilq 182 (717)
T COG4981 149 DGFPYVAFKPGTIEQIRSVIRIAKA--NPTFPIILQ 182 (717)
T ss_pred cCceeEEecCCcHHHHHHHHHHHhc--CCCCceEEE
Confidence 4678899999999999999999998 224577664
No 54
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=26.25 E-value=2.1e+02 Score=21.54 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=29.7
Q ss_pred eEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHH
Q 042782 265 FGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYL 302 (527)
Q Consensus 265 lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l 302 (527)
+|.|.++.+...+.........+.|.+.+++.+++...
T Consensus 22 ~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~ 59 (70)
T PF14259_consen 22 FGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL 59 (70)
T ss_dssp SSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC
Confidence 35588888887766667888899999999988876643
No 55
>COG0347 GlnK Nitrogen regulatory protein PII [Amino acid transport and metabolism]
Probab=23.56 E-value=79 Score=27.77 Aligned_cols=42 Identities=14% Similarity=0.382 Sum_probs=31.7
Q ss_pred CCCcceecccCcccHHHHHHHHHHhhc-CccCCCceEEeeCCC
Q 042782 418 VPHPWLNLFIPKSRIADFDKGVFKGIL-GNKTGGPILIYPMNK 459 (527)
Q Consensus 418 ~r~~~~dv~VP~s~l~~~~~~v~~~l~-gh~g~G~ih~~p~~~ 459 (527)
+++..+.++|+.+.+.+.++.+.+..- ||.|||-|.++|+.+
T Consensus 56 lpK~~ieIvV~de~ve~vie~I~~~a~tG~~GDGkIFV~~V~~ 98 (112)
T COG0347 56 LPKVKIEIVVSDEDVDEVIEAIKKAARTGKIGDGKIFVSPVEE 98 (112)
T ss_pred ccceEEEEEEChHHHHHHHHHHHHHHhcCCCCCeEEEEEEhhe
Confidence 344567899998888888877643332 899999999999854
No 56
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=23.34 E-value=1.1e+02 Score=28.00 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=25.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHhcCcCCceEEEE
Q 042782 97 WAVLHPASADDITRVVKAAYESEAHGFTISAR 128 (527)
Q Consensus 97 ~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~r 128 (527)
..|+.|.+.+|+..++++|-+ .+-|+.+|
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~---~~~P~~ir 153 (156)
T cd07033 125 MTVLRPADANETAAALEAALE---YDGPVYIR 153 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHh---CCCCEEEE
Confidence 468999999999999999998 66688877
No 57
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=20.17 E-value=32 Score=31.04 Aligned_cols=14 Identities=36% Similarity=0.807 Sum_probs=10.0
Q ss_pred eecccchhhHHHhhh
Q 042782 18 VLCWCCLNYLAIKLA 32 (527)
Q Consensus 18 ~~~~~~~~~~~~~~~ 32 (527)
-|| |||+||+.-..
T Consensus 14 aLc-CCpsvc~t~~~ 27 (143)
T PF01456_consen 14 ALC-CCPSVCATASE 27 (143)
T ss_pred HHH-cCcchhccccc
Confidence 357 99999986444
Done!