Query 042782
Match_columns 527
No_of_seqs 394 out of 2713
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 16:26:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2exr_A Cytokinin dehydrogenase 100.0 9.9E-64 3.4E-68 545.5 29.7 459 43-526 4-486 (524)
2 1w1o_A Cytokinin dehydrogenase 100.0 3.9E-56 1.3E-60 487.1 27.4 448 60-525 33-497 (534)
3 3pm9_A Putative oxidoreductase 100.0 1.3E-55 4.5E-60 475.6 25.6 404 60-510 16-458 (476)
4 4bby_A Alkyldihydroxyacetoneph 100.0 1.5E-47 5.2E-52 428.2 31.4 401 60-489 163-616 (658)
5 2uuu_A Alkyldihydroxyacetoneph 100.0 2E-46 6.8E-51 412.9 29.4 409 61-498 94-553 (584)
6 1f0x_A DLDH, D-lactate dehydro 100.0 1.3E-46 4.3E-51 412.3 11.4 396 60-489 11-528 (571)
7 1e8g_A Vanillyl-alcohol oxidas 100.0 5.6E-43 1.9E-47 384.8 34.3 389 61-485 24-501 (560)
8 1wvf_A 4-cresol dehydrogenase 100.0 1.1E-42 3.8E-47 379.5 29.4 391 61-486 20-471 (520)
9 2bvf_A 6-hydroxy-D-nicotine ox 100.0 3.1E-34 1E-38 308.4 23.2 219 69-303 11-234 (459)
10 3tsh_A Pollen allergen PHL P 4 100.0 1.3E-34 4.3E-39 314.5 19.8 228 59-302 9-249 (500)
11 3rja_A Carbohydrate oxidase; p 100.0 3E-33 1E-37 301.4 20.1 199 77-290 18-219 (473)
12 4feh_A Oxidoreductase DPRE1; a 100.0 3.1E-33 1.1E-37 301.5 19.8 206 82-302 30-239 (481)
13 1zr6_A Glucooligosaccharide ox 100.0 6.7E-33 2.3E-37 301.0 18.9 212 62-290 6-223 (503)
14 3fw9_A Reticuline oxidase; BI- 100.0 1.4E-32 4.7E-37 297.3 19.6 200 86-302 36-241 (495)
15 3vte_A Tetrahydrocannabinolic 100.0 5.1E-32 1.8E-36 293.8 22.0 216 70-302 21-249 (518)
16 2vfr_A Xylitol oxidase, aldito 100.0 1.6E-32 5.6E-37 291.9 15.7 207 85-318 10-218 (422)
17 3pop_A GILR oxidase; FAD bindi 100.0 2E-31 7E-36 288.7 21.3 205 70-290 8-234 (501)
18 2y3s_A TAML; oxidoreductase; H 100.0 1.7E-30 6E-35 283.4 24.7 198 77-290 40-260 (530)
19 2wdx_A Putative hexose oxidase 100.0 1.6E-30 5.5E-35 283.4 23.5 197 78-290 39-258 (523)
20 2ipi_A Aclacinomycin oxidoredu 100.0 2.4E-30 8.2E-35 282.0 23.4 197 77-289 36-255 (521)
21 1hsk_A UDP-N-acetylenolpyruvoy 100.0 5.9E-31 2E-35 270.7 4.2 271 60-387 17-302 (326)
22 2i0k_A Oxidoreductase; MIX alp 100.0 2.4E-29 8.3E-34 276.3 16.1 201 79-298 19-240 (561)
23 3js8_A Cholesterol oxidase; ch 100.0 8.8E-29 3E-33 267.8 17.2 206 81-305 15-250 (540)
24 3tx1_A UDP-N-acetylenolpyruvoy 99.9 4E-27 1.4E-31 241.2 12.2 192 60-280 23-217 (322)
25 3i99_A UDP-N-acetylenolpyruvoy 99.9 9.7E-24 3.3E-28 218.5 14.4 164 92-280 27-199 (357)
26 1uxy_A MURB, uridine diphospho 99.9 5.8E-23 2E-27 211.9 18.6 166 92-281 11-184 (340)
27 2gqt_A UDP-N-acetylenolpyruvyl 99.9 2.9E-22 1E-26 199.9 9.0 174 81-302 11-187 (268)
28 2yvs_A Glycolate oxidase subun 99.8 3.1E-20 1.1E-24 180.2 10.3 122 166-292 1-128 (219)
29 1ffv_C CUTM, flavoprotein of c 98.4 8.3E-07 2.8E-11 89.2 10.5 152 95-279 4-178 (287)
30 1n62_C Carbon monoxide dehydro 97.7 4.2E-05 1.4E-09 76.8 7.2 151 95-278 4-177 (288)
31 2w3s_A Xanthine dehydrogenase; 97.6 4.6E-05 1.6E-09 81.3 6.1 149 97-277 178-345 (462)
32 3nvz_B Xanthine dehydrogenase/ 97.2 0.00038 1.3E-08 70.3 6.8 158 93-277 7-190 (305)
33 1t3q_C Quinoline 2-oxidoreduct 96.7 0.00094 3.2E-08 66.8 4.2 151 95-276 4-174 (288)
34 3hrd_C Nicotinate dehydrogenas 96.7 0.0026 8.9E-08 63.9 7.4 104 96-216 3-119 (296)
35 1rm6_B 4-hydroxybenzoyl-COA re 93.3 0.02 6.9E-07 58.1 1.0 100 96-213 6-117 (324)
36 3unc_A Xanthine dehydrogenase/ 93.2 0.091 3.1E-06 62.8 6.3 105 94-216 231-356 (1332)
37 3zyv_A AOH1; oxidoreductase, m 72.5 1.5 5E-05 52.6 2.5 102 97-216 241-363 (1335)
38 3mhy_A PII-like protein PZ; PI 31.7 25 0.00086 29.4 2.6 39 420-459 58-98 (112)
39 4aff_A Nitrogen regulatory pro 30.9 25 0.00087 29.6 2.5 38 421-459 59-98 (116)
40 2vfr_A Xylitol oxidase, aldito 29.5 22 0.00076 36.6 2.3 62 423-487 293-376 (422)
41 3t9z_A GLNK3, nitrogen regulat 28.7 30 0.001 29.3 2.5 40 419-459 57-98 (118)
42 1xty_A PTH, peptidyl-tRNA hydr 28.6 66 0.0022 27.2 4.7 46 82-132 43-89 (120)
43 3ncq_A Nitrogen regulatory pro 28.4 30 0.001 29.4 2.5 38 421-459 59-98 (119)
44 3l7p_A Putative nitrogen regul 28.4 25 0.00086 29.6 2.0 40 419-459 60-101 (115)
45 2dnh_A Bruno-like 5, RNA bindi 27.5 96 0.0033 24.4 5.5 46 253-302 31-76 (105)
46 2do4_A Squamous cell carcinoma 26.3 1E+02 0.0036 23.9 5.4 46 253-302 33-78 (100)
47 3ulh_A THO complex subunit 4; 25.9 1E+02 0.0034 24.3 5.3 46 253-302 45-90 (107)
48 2ywk_A Putative RNA-binding pr 25.1 91 0.0031 23.9 4.8 46 253-302 32-77 (95)
49 3s8s_A Histone-lysine N-methyl 24.9 1.1E+02 0.0039 24.7 5.5 46 253-302 22-68 (110)
50 1rzw_A Protein AF2095(GR4); be 24.6 85 0.0029 26.8 4.7 42 86-132 41-83 (123)
51 1wn2_A Peptidyl-tRNA hydrolase 24.1 1.1E+02 0.0038 25.8 5.3 38 92-132 52-90 (121)
52 3p04_A Uncharacterized BCR; SE 23.5 94 0.0032 24.9 4.4 34 97-153 7-40 (87)
53 2do0_A HnRNP M, heterogeneous 23.5 1.2E+02 0.0043 24.1 5.5 46 253-302 31-76 (114)
54 1jmt_A Splicing factor U2AF 35 23.2 1.1E+02 0.0036 24.7 4.9 40 263-302 49-88 (104)
55 3ue2_A Poly(U)-binding-splicin 23.0 1.1E+02 0.0037 25.5 5.0 47 256-302 40-91 (118)
56 1rlk_A Hypothetical protein TA 22.9 94 0.0032 26.1 4.6 38 92-132 48-86 (117)
57 2pe8_A Splicing factor 45; RRM 22.8 91 0.0031 25.2 4.4 40 263-302 35-76 (105)
58 2zv3_A PTH, peptidyl-tRNA hydr 21.5 95 0.0032 26.0 4.3 31 92-125 46-76 (115)
59 2d9p_A Polyadenylate-binding p 20.4 1.7E+02 0.0057 22.8 5.6 38 264-302 38-75 (103)
No 1
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=100.00 E-value=9.9e-64 Score=545.48 Aligned_cols=459 Identities=46% Similarity=0.807 Sum_probs=372.2
Q ss_pred HHHHHHHhhhccccCCC--------CChHHHHccCCCCcEEcChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHH
Q 042782 43 LLLTFAICRLIVTVGLT--------MDPTELLRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKA 114 (527)
Q Consensus 43 ~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~v~~d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~ 114 (527)
++.-.|+.+.....+.. ..+++|+ ++++|.+|+..+..|++||+..+...|.+|++|+|++||+++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~v~~d~~~~~~~~~d~~~~~~~~P~~vv~P~s~eeV~~iv~~ 80 (524)
T 2exr_A 4 YIEPYFLENDAEAASAATAAGKSTDGVSESLN---IQGEILCGGAAADIAGRDFGGMNCVKPLAVVRPVGPEDIAGAVKA 80 (524)
T ss_dssp ------------------------------CC---CSSEEECSHHHHHHHTCCTTCCCCCCCSEEEECSSHHHHHHHHHH
T ss_pred cccchhhcCchhhhhccccccccHHHHHHhcC---CCCeEEeCHHHHHHHhccccccccCCCCEEEecCCHHHHHHHHHH
Confidence 44455555555433321 3344444 488999999999999999998889999999999999999999999
Q ss_pred HH-hcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeC-----CC--cEEEEeCCccHHHH
Q 042782 115 AY-ESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYE-----KE--RYVDVWGGELWIDV 186 (527)
Q Consensus 115 a~-~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~-----~~--~~v~V~aGv~~~~l 186 (527)
|+ + +++||++||||||+.|++.+.+||+|||++||+ | ++++ ++ .+++||||++|.++
T Consensus 81 a~~~---~~~~v~~~GgGts~~g~~~~~~gvvidl~~m~~-----------i-~i~~~~~~~~~~~~~v~v~aGv~~~~l 145 (524)
T 2exr_A 81 ALRS---DKLTVAARGNGHSINGQAMAEGGLVVDMSTTAE-----------N-HFEVGYLSGGDATAFVDVSGGALWEDV 145 (524)
T ss_dssp HHHS---SSCCEEEESSSCCSSSTTCCTTSEEEEGGGGTT-----------S-CEEEEECCSSSSSEEEEEETTCBHHHH
T ss_pred HHhh---cCceEEEECCCcCCCCcccCCCEEEEECcCCCC-----------c-EEeecccCCCCCceEEEEeCCcCHHHH
Confidence 99 7 899999999999999998876899999999999 4 6665 45 79999999999998
Q ss_pred HHHHH-hCCCCCCCcCCCccccccccccCCcccCCccccCCccCcEeEEEEEeCCCcEEEcCCCCCcchhhhhhcCCCCe
Q 042782 187 LRSTL-EHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGLGQF 265 (527)
Q Consensus 187 ~~~l~-~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~~~~dL~~~~~Gs~G~l 265 (527)
++++. ++|++|+++++...+||||+++++|+|+++.+||.++|+|++++||++||++++++..+|+||+|+++||+|+|
T Consensus 146 ~~~~l~~~Gl~~~~~~s~~~~tiGG~va~ng~G~~~~~yG~~~d~V~~l~vV~~dG~v~~~~~~~~~dL~~~~~Gs~Gtl 225 (524)
T 2exr_A 146 LKRCVSEYGLAPRSWTDYLGLTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVLGGLGQF 225 (524)
T ss_dssp HHHHHHHHSEECSCCCSCCSSBHHHHHTTCCCCTTHHHHCCGGGSEEEEEEEETTSCEEEEESSSSHHHHHHHTTCTTSS
T ss_pred HHHHHHHcCCCCCCCCcCCceeecccCCCCCCcccccccCcHhhhEEEEEEEecCCeEEEECCCCChhHHhHhhcCCCcc
Confidence 77666 99999888888888999999999998999999999999999999999999999999888999999999999999
Q ss_pred EEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHHHHcCCCCCCchhhhcccchhcch-hhhhhccccccCCCCCccc
Q 042782 266 GIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYLISLHELPASQKFDYVEGFVIVDE-GLINNWRSSFFSPRNPVKI 344 (527)
Q Consensus 266 GIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~p~~~e~ld~~~~~~~-~~~~~~~~~~~~~~~~~~~ 344 (527)
||||+++|||+|.|+...++.+.|++++++.+++..+++.+ .. +++|+||++++++. ..++.|++.++........
T Consensus 226 GiIt~~tl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l~~~~--~~-~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (524)
T 2exr_A 226 GIITRARVLLQPAPDMVRWIRVVYTEFDEFTQDAEWLVSQK--NE-SSFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDP 302 (524)
T ss_dssp EEEEEEEEEEEECCSEEEEEEEEESCHHHHHHHHHHHHTSC--TT-SSCSEEEEEEEESSCCTTTSGGGSCSSTTSCCCG
T ss_pred EEEEEEEEEEEEcCCeeEEEEEEeCCHHHHHHHHHHHHHcC--Cc-chhHhhchhhhhcchhhhhhhhhcccccccccch
Confidence 99999999999999999999999999999999999998863 23 58899999988765 4556666553322211122
Q ss_pred ccCCC-CCceEEEEEEeecC-CCCChhhHHHHHHHHHHHhhhcCCceeeccchhhhhhhhhhhcccHHHHhhhhcCCCcc
Q 042782 345 TSLGT-DGGVLYCLEITKNY-DESTADTTDQEVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSKGLWEVPHPW 422 (527)
Q Consensus 345 ~~l~~-~~~~~llle~~~~~-~~~~~~~~~~~~~~ll~~l~~~~g~~~~~d~~~~~~~~~v~~~~~~~~~~~lW~~r~~~ 422 (527)
..+|. ++.+++++|+++|| +++++++++++++.+++.++..++..+..+..|.+|.++....+...++..+|.++++|
T Consensus 303 ~~~p~~~~~~~llve~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~~~~~ 382 (524)
T 2exr_A 303 TRLPQSCGSVLYCLELGLHYRDSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPHPW 382 (524)
T ss_dssp GGSCTTCCSEEEEEEEEEEECTTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCCCC
T ss_pred hcCCcccccEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHhhhhcccccCCCe
Confidence 34553 35688999988888 77788899999999999998776666666667777765553334567778899999999
Q ss_pred eecccCcccHHHHHHHHHHhhcCccCCCceE---EeeCCCcccccccccCCCh-hhHHHHHHHhCCCCCCCcchhhHHHH
Q 042782 423 LNLFIPKSRIADFDKGVFKGILGNKTGGPIL---IYPMNKHKWDNRSSVVTPD-EDVFYLVAFLRSALDNGEEMQSLEYL 498 (527)
Q Consensus 423 ~dv~VP~s~l~~~~~~v~~~l~gh~g~G~ih---~~p~~~~~~~~~~~~~~p~-~~v~~~v~~l~~~~~~~~~~~~~~~~ 498 (527)
.|++||+++|+++++.+++ +|++|||+| ++|..+++|.++.+.++|+ +++|+.|..++.+.|.+.+ .+++++
T Consensus 383 ~Dv~VP~s~l~~~~~~v~~---~~~gdgn~h~~i~~~~~~~~~~~r~~~~~~~g~~~~~~v~~~~~~~~~~~~-~~~~~~ 458 (524)
T 2exr_A 383 LNLFVSKRDIGDFNRTVFK---ELVKNGVNGPMLVYPLLRSRWDDRTSVVIPEEGEIFYIVALLRFVPPCAKV-SSVEKM 458 (524)
T ss_dssp EEEEEEHHHHHHHHHHCCC---CCTTTCCSSCEEEEEEEGGGSCTTSSCCCCSSCSEEEEEEECCCCCTTSCH-HHHHHH
T ss_pred eEEEECHHHHHHHHHHHHH---HHhCCCCcceEEEEeCCchHHHhHHHhhCCCCccEEEEEEEeccCCCcccc-hHHHHH
Confidence 9999999999999988743 677776554 5677778888899999986 7888888888877665433 579999
Q ss_pred HHHHHHHHHHHHHcCCCceeeCCCCCCC
Q 042782 499 NHQNRQILKFCDEAGIKAKQYLPHYTTQ 526 (527)
Q Consensus 499 ~~~n~~~~~~~~~~~~~~k~yl~~~~~~ 526 (527)
+++|++|+++|..+|++.|+||+||.++
T Consensus 459 ~~~~~~i~~~~~~~G~~~~~yl~~~~~~ 486 (524)
T 2exr_A 459 VAQNQEIVHWCVKNGIDYKLYLPHYKSQ 486 (524)
T ss_dssp HHHHHHHHHHHHHTTCCEEESSCCCCSH
T ss_pred HHHHHHHHHHHHHcCCccEEeecCCCCH
Confidence 9999999999999999999999999864
No 2
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=100.00 E-value=3.9e-56 Score=487.10 Aligned_cols=448 Identities=50% Similarity=0.876 Sum_probs=352.6
Q ss_pred CChHHHHccCCCCcEEcChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcC-CceEEEEcCCCCCCCCC
Q 042782 60 MDPTELLRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAH-GFTISARGHGHSINGQA 138 (527)
Q Consensus 60 ~~~~~l~~~~~~~~v~~d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~-~i~v~~rG~G~s~~g~~ 138 (527)
..+++|+++.++++|.+|+..+..|++||+..+...|.+|++|+|++||+++|++|++ ..+ ++||++||+|||+.|++
T Consensus 33 ~~~~~l~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~-~~~~~~~v~~~G~G~~~~g~~ 111 (534)
T 1w1o_A 33 PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANS-TPGWPYTIAFRGRGHSLMGQA 111 (534)
T ss_dssp -------CTTTTTCEECSHHHHHHTSCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHH-CTTCCCCEEEESSCCCSSSTT
T ss_pred HHHHHHHhcCCCceEecCHHHHHHHhccccccccCCCCEEEecCCHHHHHHHHHHHHh-cCCCCceEEEECCCCCCCCCc
Confidence 6668899978899999999999999999998889999999999999999999999995 114 99999999999999998
Q ss_pred cCCCcEEEEcCCCCCCCCCCCCCCCcc-----eEEeCCCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCcccccccccc
Q 042782 139 QTSNGVVIQMSGSRGRRLGSSTPAALR-----PHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLS 213 (527)
Q Consensus 139 ~~~~gvvIdl~~mn~~~~~~~~~~~~i-----i~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia 213 (527)
.+.+|++|||++||+ | +++|+++.+++||||++|.++++++.++|++|+++++...+||||+++
T Consensus 112 ~~~~gvvi~l~~m~~-----------i~~~~~~~~d~~~~~v~v~aGv~~~~l~~~~~~~Gl~~~~~~~~~~~tvGG~v~ 180 (534)
T 1w1o_A 112 FAPGGVVVNMASLGD-----------AAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLS 180 (534)
T ss_dssp CCTTSEEEEGGGGGC-----------SSSSCSEEECTTSSEEEEETTCBHHHHHHHHHTTTEEESCCCSSCCSBHHHHHT
T ss_pred CCCCeEEEECccccc-----------cccCccEEEcCCCCEEEECCCcCHHHHHHHHHHCCCcccCCCCCCCEEeceecc
Confidence 877899999999998 5 789988899999999999999999999999988888888899999999
Q ss_pred CCcccCCccccCCccCcEeEEEEEeCCCcEEEcCCCCCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHH
Q 042782 214 NAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFS 293 (527)
Q Consensus 214 ~~g~G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~ 293 (527)
++|+|+.+.+||.++|+|+++|||++||+++++++.+|+||||+++||+|+|||||+++|||+|.|+...++.+.|++++
T Consensus 181 ~~g~g~~~~~yG~~~d~v~~~evV~~dG~v~~~~~~~~~dL~~~~rGs~G~~GIVt~~~l~l~p~~~~~~~~~~~~~~~~ 260 (534)
T 1w1o_A 181 NAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFA 260 (534)
T ss_dssp TCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEESSSSHHHHHHHTTCTTCSEEEEEEEEEEEECCSEEEEEEEEESCHH
T ss_pred CCCccccccccccHhhhEEEEEEEeCCccEEEECCCCChhhHhhhcCCCCCcEEEEEEEEEEEECCcceEEEEEEeCCHH
Confidence 99889999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCC-----CCchhhhcccchhcchhhhhhcccc-ccCCCCCcccccCCCC--CceEEEEEEeecCCC
Q 042782 294 TFTRDQEYLISLHELP-----ASQKFDYVEGFVIVDEGLINNWRSS-FFSPRNPVKITSLGTD--GGVLYCLEITKNYDE 365 (527)
Q Consensus 294 ~~~~~~~~l~~~~~~~-----~p~~~e~ld~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~--~~~~llle~~~~~~~ 365 (527)
++.+++..+.+. + . .|+++|+||+..+....+++.|... ++.........+++.. +++++++|+..+|++
T Consensus 261 ~~~~~~~~~~~~-~-~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ie~~~~~~g 338 (534)
T 1w1o_A 261 AFSADQERLTAP-R-PGGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDN 338 (534)
T ss_dssp HHHHHHHHHHCB-C-------CBCSCSEEEEEEEEGGGHHHHHHTTSSSCHHHHHHHHHHHHHTTCSEEEEEEEEEEC--
T ss_pred HHHHHHHHHHhc-c-cccccccccchhHhhhhhhcccccccccccccccCccccccccccccccccceEEEEEEEEecCC
Confidence 999999888776 3 3 4678999999877543333443321 0100000000022222 568899999888876
Q ss_pred CCh--hhHHHHHHHHHHHhhhcCCceeeccchhhhhhhhhhhcccHHHHhhhhcCCCcceecccCcccHHHHHHHHHHhh
Q 042782 366 STA--DTTDQEVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSKGLWEVPHPWLNLFIPKSRIADFDKGVFKGI 443 (527)
Q Consensus 366 ~~~--~~~~~~~~~ll~~l~~~~g~~~~~d~~~~~~~~~v~~~~~~~~~~~lW~~r~~~~dv~VP~s~l~~~~~~v~~~l 443 (527)
.++ +++++.++.+++.+...++..+..+..|.++.++........+...+|.++++|.|++||++++++|++++.+.+
T Consensus 339 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~w~~r~~~~~~~~~~~~d~~vP~s~l~~~~~~~~~~l 418 (534)
T 1w1o_A 339 ATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGI 418 (534)
T ss_dssp -----CHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTHHHHHHHHHHHTTCSSSCCCCEEEEEEGGGHHHHHHHHTTTT
T ss_pred CccchhhhHHHHHHHHHhhcccCCcceeccchHHHHhhhhhhhHHHHhhccccccCCccccEEecHHHHHhHHHHHHHHH
Confidence 555 778888999998887555544455677777665543322344567789988998899999999999999985446
Q ss_pred cCccCC-CceEEeeCCCcccccccccCCChhhHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHcCCCceeeCCC
Q 042782 444 LGNKTG-GPILIYPMNKHKWDNRSSVVTPDEDVFYLVAFLRSALDNGEEMQSLEYLNHQNRQILKFCDEAGIKAKQYLPH 522 (527)
Q Consensus 444 ~gh~g~-G~ih~~p~~~~~~~~~~~~~~p~~~v~~~v~~l~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~k~yl~~ 522 (527)
..+.+. +.++++++....|..+.+.+.|+..+++.+....... .++.+++..++|+++++.|.+++++.+.||+|
T Consensus 419 ~~~~~~~~~~~~~~~~gh~~~~~~s~v~~dgn~h~~v~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~yl~~ 494 (534)
T 1w1o_A 419 LQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSV----APNDLARLQEQNRRILRFCDLAGIQYKTYLAR 494 (534)
T ss_dssp TTTSCCCSCEEEEEEEGGGSCTTSSCCCCSSSEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHTTCCCEESSCC
T ss_pred hhccCCcccEEEeecccccccccccccCCCccEEEEEEEecCCC----CcchHHHHHHHHHHHHHHHHHhCCCcEEECCC
Confidence 654432 6788888765566666777777776666554433210 12346777899999999999999999999999
Q ss_pred CCC
Q 042782 523 YTT 525 (527)
Q Consensus 523 ~~~ 525 (527)
|.+
T Consensus 495 ~~~ 497 (534)
T 1w1o_A 495 HTD 497 (534)
T ss_dssp CSS
T ss_pred CCC
Confidence 863
No 3
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=100.00 E-value=1.3e-55 Score=475.64 Aligned_cols=404 Identities=17% Similarity=0.162 Sum_probs=328.1
Q ss_pred CChHHHHccCCCCcEEcChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCc
Q 042782 60 MDPTELLRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQ 139 (527)
Q Consensus 60 ~~~~~l~~~~~~~~v~~d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~ 139 (527)
..+++|+++++.+.|.+|+..+..|++||+..+...|.+|++|+|++||+++|++|++ +++|+++||||||+.|++.
T Consensus 16 ~~~~~L~~~lg~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~s~eeV~~~v~~a~~---~~~pv~~~GgGt~~~g~~~ 92 (476)
T 3pm9_A 16 ELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANE---ARVALVPQGGNTGLVGGQT 92 (476)
T ss_dssp HHHHHHHHHHCGGGEECSHHHHHHHHBCTTCCCBCCCSCEECCCSHHHHHHHHHHHHH---HTCCEEEESSSCCSSSTTC
T ss_pred HHHHHHHHhcCCCcEecCHHHHHHHhcccccccCCCCCEEEecCCHHHHHHHHHHHHH---cCCeEEEEeCCCCCCCCcc
Confidence 4577899999999999999999999999988789999999999999999999999999 9999999999999999988
Q ss_pred C-CCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCC-CCCcCCCccccccccccCCcc
Q 042782 140 T-SNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLA-PKSWTDYLYLSVGGTLSNAGI 217 (527)
Q Consensus 140 ~-~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~-p~~~~~~~~~TVGG~ia~~g~ 217 (527)
+ .+|++|||++||+ ++++|+++.+++||||++|.+|.+++.++|++ |+++++...+||||++++|++
T Consensus 93 ~~~ggvvIdl~~m~~-----------i~~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~~~~~~~s~~~~tvGG~ia~nag 161 (476)
T 3pm9_A 93 PHNGEVVISLKRMDK-----------IREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAG 161 (476)
T ss_dssp CCSSCEEEECTTCCC-----------EEEEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTTTTCBHHHHHHHTCC
T ss_pred CCCCcEEEEeeCCCc-----------eEEEcCCCCeEEECCCcCHHHHHHHHHHhCCccCCCCCCCCcEEEccccCCCCC
Confidence 7 5789999999999 67999999999999999999999999999997 878877778999999998888
Q ss_pred cCCccccCCccCcEeEEEEEeCCCcEEEcCCC-----CCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCH
Q 042782 218 SGQAFHQGPQITNVHELDVVTGKGELLTCSEE-----QNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDF 292 (527)
Q Consensus 218 G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~-----~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~ 292 (527)
|..+.+||.++|+|++++||++||++++++.. .++||+++++||+|+|||||+++|||+|.|+......+.|+++
T Consensus 162 G~~~~~yG~~~d~V~~levV~~dG~v~~~~~~~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~ 241 (476)
T 3pm9_A 162 GTAALAYGLARDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSP 241 (476)
T ss_dssp CTTHHHHCCHHHHEEEEEEECTTSCEEECCCCCSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCH
T ss_pred CCcccccCcHHHheeEEEEEccCCeEEEcCCcccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCH
Confidence 88899999999999999999999999998642 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhhcccchhcchhhhhhccccccCCCCCcccccCCCCCceEEEEEEeecCCCCChhhHH
Q 042782 293 STFTRDQEYLISLHELPASQKFDYVEGFVIVDEGLINNWRSSFFSPRNPVKITSLGTDGGVLYCLEITKNYDESTADTTD 372 (527)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~p~~~e~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~llle~~~~~~~~~~~~~~ 372 (527)
+++.+++..+.+..+ ..|+++|+||...+.. ++. +. .. ..+++.+.++++++|+ ++.+ ++++
T Consensus 242 ~~a~~~~~~~~~~~g-~~p~a~El~d~~~~~~---~~~-----~~-~~---~~~~~~~~~~~llve~----~g~~-~~~~ 303 (476)
T 3pm9_A 242 DDALKLLGIAQGEAA-GNLTSFELIAETPLDF---SVR-----HA-NN---RDPLEARYPWYVLIEL----SSPR-DDAR 303 (476)
T ss_dssp HHHHHHHHHHHHHHG-GGEEEEEEEEHHHHHH---HHH-----HT-TC---CCCSSSCCSEEEEEEE----EESS-SCHH
T ss_pred HHHHHHHHHHHHhcC-CCceEEEecCHHHHHH---HHh-----cc-CC---CCCCCccCCeEEEEEE----ccCc-HHHH
Confidence 999999999876323 5788999999876532 221 10 00 1123334468999995 4444 5677
Q ss_pred HHHHHHHHHhhhcCCceeeccchhhhhhhhhhhcccHHHHhhhhcCCCc------------ceecccCcccHHHHHHHHH
Q 042782 373 QEVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSKGLWEVPHP------------WLNLFIPKSRIADFDKGVF 440 (527)
Q Consensus 373 ~~~~~ll~~l~~~~g~~~~~d~~~~~~~~~v~~~~~~~~~~~lW~~r~~------------~~dv~VP~s~l~~~~~~v~ 440 (527)
++++++++.+...+... ....+.++.+++.+|++|+. +.|++||+++|++|++++.
T Consensus 304 ~~~~~~~~~~~~~g~~~------------~~~~a~~~~~~~~lW~~R~~~~~~~~~~g~~~~~Dv~vP~~~l~~~~~~~~ 371 (476)
T 3pm9_A 304 AALESILERGFEDGIVV------------DAAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQAN 371 (476)
T ss_dssp HHHHHHHHHHHHTTCCC------------EEEECCSHHHHHHHHHHHHTHHHHTGGGCCEECCEEECCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCc------------ceEEeCCHHHHHHHHHHHHHHHHHHhhcCCceeEEEEeeHHHHHHHHHHHH
Confidence 88888888875432211 11245677778889988862 4699999999999999873
Q ss_pred Hhh------------cCccCCCceEEeeCCCcc-----cccccccCCChhhHHHHHHHhCCCCCCC--cchhhHHHHHHH
Q 042782 441 KGI------------LGNKTGGPILIYPMNKHK-----WDNRSSVVTPDEDVFYLVAFLRSALDNG--EEMQSLEYLNHQ 501 (527)
Q Consensus 441 ~~l------------~gh~g~G~ih~~p~~~~~-----~~~~~~~~~p~~~v~~~v~~l~~~~~~~--~~~~~~~~~~~~ 501 (527)
++ .||+||||+|++++.+.. +.++...+. ++++.++..++|+++.+ .|..+.+.|..+
T Consensus 372 -~~~~~~~~~~~~~~~gH~gdGnlH~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~gGsis~EHGiG~~k~~~l~~~ 448 (476)
T 3pm9_A 372 -AAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAEFLARWHDVS--QVVFEVVLRLGGSISAEHGIGVMKRDELAEV 448 (476)
T ss_dssp -HHHHHHSTTCEEEEEEEGGGTEEEEEEECCTTCCHHHHHTTHHHHH--HHHHHHHHHTTCBSCSSSCCTTTTHHHHHHH
T ss_pred -HHHHHhcCCCeEEEEEEeCCCceEEEEecCCcCChHHHHHHHHHHH--HHHHHHHHHcCCEEEEcccCchhHHHHHHHh
Confidence 43 289999999998765321 223334443 89999999999999996 555556655543
Q ss_pred H-HHHHHHHH
Q 042782 502 N-RQILKFCD 510 (527)
Q Consensus 502 n-~~~~~~~~ 510 (527)
- ...++.++
T Consensus 449 ~~~~~~~~m~ 458 (476)
T 3pm9_A 449 KDKTAIELMR 458 (476)
T ss_dssp SCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 2 33444443
No 4
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=100.00 E-value=1.5e-47 Score=428.21 Aligned_cols=401 Identities=16% Similarity=0.101 Sum_probs=285.5
Q ss_pred CChHHHHccCCCCcEEcChhhHHHhhhc---------cCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcC
Q 042782 60 MDPTELLRLGVYGQLSVDPFDVQTASLD---------FGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGH 130 (527)
Q Consensus 60 ~~~~~l~~~~~~~~v~~d~~~~~~~~~d---------~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~ 130 (527)
..+.+|+++.+ .+++|..++..++.+ |.+.|+..|.+||+|+|++||+++|++|++ +++||+||||
T Consensus 163 ~~~~~l~~~~~--~~~~~~~~r~~h~~g~s~~d~~~~~~g~~~~~P~aVV~P~s~eeV~~iv~~A~~---~~ipVvprGg 237 (658)
T 4bby_A 163 DFLHELKKTNI--SYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACK---YNLCIIPIGG 237 (658)
T ss_dssp HHHHHHHHHTC--EEECCHHHHHHTSCCSCHHHHHHHHSSCCSCCCSEEEECCSHHHHHHHHHHHHH---TTCEEEEESS
T ss_pred HHHHHHHHhcc--cccCchHHHhhhcCCCCHHHHHHHhCCcccCCcCEEEeeCCHHHHHHHHHHHHH---CCCeEEEECC
Confidence 34556766654 467777766655543 567899999999999999999999999999 9999999999
Q ss_pred CCCCCCCCcC-----CCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCC-CCCcCCCc
Q 042782 131 GHSINGQAQT-----SNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLA-PKSWTDYL 204 (527)
Q Consensus 131 G~s~~g~~~~-----~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~-p~~~~~~~ 204 (527)
|||+.|++.+ .++|+|||++||+ |+++|+++.+++||||+++.+|.++|.++|++ |+++++..
T Consensus 238 GTsl~GG~~~~~~~~~ggVvLDlsrMnr-----------IleiD~~~~~atVeaGv~~~~L~~~L~~~Gl~lp~dP~S~~ 306 (658)
T 4bby_A 238 GTSVSYGLMCPADETRTIISLDTSQMNR-----------ILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLE 306 (658)
T ss_dssp CCCSSSTTCCCTTCCSCEEEEECTTCCC-----------EEEEETTTTEEEEETTCBHHHHHHHHHHHTEECCCCCTTTT
T ss_pred CcCCCCCCCCCCCCCCcEEEEECccCCC-----------cEEEcCCCCEEEEecCchHHHHHHHHHHcCCccCCCCCCcc
Confidence 9999987664 3569999999999 78999999999999999999999999999985 77888888
Q ss_pred cccccccccCCcccCCccccCCccCcEeEEEEEeCCCcEEEcCCC----CCcchhhhhhcCCCCeEEEEeEEEeeecCCc
Q 042782 205 YLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEE----QNSGLFHAVLGGLGQFGIITRARISLEPAPK 280 (527)
Q Consensus 205 ~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~----~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~ 280 (527)
.+||||+++|+++|.++.+||.++|+|+++|||++||++++.++. .+|||+++++||+|||||||+++|||+|.|+
T Consensus 307 ~aTIGG~iAtna~G~~s~rYG~~~d~VlgleVVlpdG~i~~~~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~ 386 (658)
T 4bby_A 307 FSTVGGWISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPE 386 (658)
T ss_dssp TCBHHHHHHHTCCCTTHHHHCCHHHHEEEEEEEETTEEEECSCCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCS
T ss_pred ccEEeehhhcCCCCCCccCcCCHHHheeeEEEEeCCCcccccccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCc
Confidence 999999999999999999999999999999999999999987643 4689999999999999999999999999999
Q ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCCCCchhhhcccchhcch-hhhhhccccccCCCC-------CcccccCCCCCc
Q 042782 281 RVRWIRVLYSDFSTFTRDQEYLISLHELPASQKFDYVEGFVIVDE-GLINNWRSSFFSPRN-------PVKITSLGTDGG 352 (527)
Q Consensus 281 ~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~p~~~e~ld~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~l~~~~~ 352 (527)
...++.+.|+|++++.+++..+.+.+ ..|+++|+||...+... ........ .+.... .....+...+..
T Consensus 387 ~~~~~~~~f~d~~~a~~av~~i~~~~--~~psa~El~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~g~~~~~~ 463 (658)
T 4bby_A 387 YQKYGSVAFPNFEQGVACLREIAKQR--CAPASIRLMDNQQFQFGHALKPQVSS-IFTSFLDGLKKFYITKFKGFDPNQL 463 (658)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHTT--CCCSEEEEECHHHHHHHHHTSSCCCC-TTCC--------------CCCTTTC
T ss_pred cccccccccCCchhhhhhHHHHHHcC--CCccccccccHHHHHHHHhhcccccc-cccccccchhhhhhhhhccCChHHH
Confidence 99999999999999999999998873 68999999998765211 00000000 000000 000001111111
Q ss_pred eEEEEEEeecCCCCChhhHHHHHHHHHHHhhhcCCceeeccchhhhhhhhhhhcccHHHHhhhhcCCC--cceecccCcc
Q 042782 353 VLYCLEITKNYDESTADTTDQEVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSKGLWEVPH--PWLNLFIPKS 430 (527)
Q Consensus 353 ~~llle~~~~~~~~~~~~~~~~~~~ll~~l~~~~g~~~~~d~~~~~~~~~v~~~~~~~~~~~lW~~r~--~~~dv~VP~s 430 (527)
....+. +++ +.+.+.+..+.+.+.+....+.....+.....++.+... ...+...|.... ..+|++||++
T Consensus 464 ~~~~~~----~eg-~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~avP~~ 535 (658)
T 4bby_A 464 SVATLL----FEG-DREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVI---AYMRDLGLEYYIIGESFETSAPWD 535 (658)
T ss_dssp EEEEEE----EEE-CHHHHHHHHHHHHHHHHTTTCEECCHHHHHHHHHHHHHH---HHHHHHHHHTTEEEEEEEEEEEGG
T ss_pred HHHHHH----hcc-cHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHhhHH---HHHHhhccccCCccceEEEEeeHH
Confidence 222222 222 455666666777776655444332222111111111110 111111111111 1369999999
Q ss_pred cHHHHHHHHHHhh------------------cCccCCCceEEeeC--CC----cccccccccCCChhhHHHHHHHhCCCC
Q 042782 431 RIADFDKGVFKGI------------------LGNKTGGPILIYPM--NK----HKWDNRSSVVTPDEDVFYLVAFLRSAL 486 (527)
Q Consensus 431 ~l~~~~~~v~~~l------------------~gh~g~G~ih~~p~--~~----~~~~~~~~~~~p~~~v~~~v~~l~~~~ 486 (527)
+++++++.+...+ .+|.++|+.|++.. .+ .+.......+ ...+++.+..++|++
T Consensus 536 ~l~~~~~~v~~~l~~~~~~~g~~~~~~~~~~~~h~~dg~~~l~~~~~~~~~~~~d~~~~~~~~--~~~~~~~v~~~GGsi 613 (658)
T 4bby_A 536 RVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQT--EAAAREEILANGGSL 613 (658)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEEECSSEEEEEEEEEEECTTCSCHHHHHHHH--HHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccccceEEEEEEeccCceEEEEecCCcCCchhHHHHHHHH--HHHHHHHHHHcCCeE
Confidence 9999998764222 16888887665432 11 1111122223 367889999999999
Q ss_pred CCC
Q 042782 487 DNG 489 (527)
Q Consensus 487 ~~~ 489 (527)
+.+
T Consensus 614 S~E 616 (658)
T 4bby_A 614 SHH 616 (658)
T ss_dssp CSS
T ss_pred EEc
Confidence 975
No 5
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=100.00 E-value=2e-46 Score=412.86 Aligned_cols=409 Identities=15% Similarity=0.095 Sum_probs=294.8
Q ss_pred ChHHHHccC-CCCcEEcChhhHHHhhhcc---------CCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcC
Q 042782 61 DPTELLRLG-VYGQLSVDPFDVQTASLDF---------GMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGH 130 (527)
Q Consensus 61 ~~~~l~~~~-~~~~v~~d~~~~~~~~~d~---------~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~ 130 (527)
.+++|++++ + .+|.+|+.++..|++|. .+.+...|.+|++|+|++||+++|++|++ +++||++|||
T Consensus 94 ~~~~L~~~l~g-~~v~~~~~~~~~y~~d~~~~~~~~~~~g~~~~~p~~vv~P~s~eeV~~iv~~a~~---~~~pv~~~Gg 169 (584)
T 2uuu_A 94 FVRELKAFFLP-DQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQLAHK---YNVVIIPMGG 169 (584)
T ss_dssp HHHHHHTTSCG-GGEECSHHHHHHTTCCSSHHHHHHHHTTCCCCCCSEEECCCSHHHHHHHHHHHHH---HTCEEEEESS
T ss_pred HHHHHHhhcCC-CeEEECHHHHHHhccCCchhhhhhhccCccCCCCCEEEeCCCHHHHHHHHHHHHH---cCCeEEEEeC
Confidence 457888887 7 78999998888777642 23356789999999999999999999999 9999999999
Q ss_pred CCCCCCCCcC----CCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCC-CCCcCCCcc
Q 042782 131 GHSINGQAQT----SNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLA-PKSWTDYLY 205 (527)
Q Consensus 131 G~s~~g~~~~----~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~-p~~~~~~~~ 205 (527)
|||+.|++.+ .++|+|||++||+ |+++|+++.+++||||++|.+|.+++.++|++ |.++++...
T Consensus 170 Gts~~gg~~~~~~~~g~vvidl~~mn~-----------I~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~p~s~~~ 238 (584)
T 2uuu_A 170 GSNIVGAIEPVSNERFTVSIDMRRMNK-----------VLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEF 238 (584)
T ss_dssp CCCSSCTTSCCCCSSCEEEEECTTCCC-----------EEEEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTGGG
T ss_pred CCCCCCCCcccCCCCCEEEEECCCCCc-----------cEEEcCCCCEEEECCCCcHHHHHHHHHHcCCeeCcCCCccCC
Confidence 9999988876 3678999999999 67999999999999999999999999999996 556655677
Q ss_pred ccccccccCCcccCCccccCCccCcEeEEEEEeCCCcEEEc---CCCCCcchhhhhhcCCCCeEEEEeEEEeeecCCceE
Q 042782 206 LSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTC---SEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRV 282 (527)
Q Consensus 206 ~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G~v~~~---~~~~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~ 282 (527)
+||||++++|++|..+.+||.++|+|+++|||++||++++. ....++||+++++||+|+|||||+++|||+|.|+..
T Consensus 239 ~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~ 318 (584)
T 2uuu_A 239 STLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTLELRNGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAV 318 (584)
T ss_dssp CBHHHHHHHTCCCTTHHHHCCHHHHEEEEEEEETTEEECCC-------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEE
T ss_pred eeEeeeccCCCCcccccCcCcHHHheeeEEEEeCCCCEEECCccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccce
Confidence 89999999998899999999999999999999999998762 233689999999999999999999999999999998
Q ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCCCCCchhhhcccchhcchhhhhhccccccC-------CCCCcccccCCCCCceEE
Q 042782 283 RWIRVLYSDFSTFTRDQEYLISLHELPASQKFDYVEGFVIVDEGLINNWRSSFFS-------PRNPVKITSLGTDGGVLY 355 (527)
Q Consensus 283 ~~~~~~f~~~~~~~~~~~~l~~~~~~~~p~~~e~ld~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~l 355 (527)
.+..+.|++++++.+++..+.+. + ..|+++|+||...+.-...... ....+. ........+++.+..+++
T Consensus 319 ~~~~~~f~~~~~a~~~~~~~~~~-~-~~p~a~El~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (584)
T 2uuu_A 319 EYYGFLFPTFAHAVSALQQIRSS-E-VIPTMIRVYDPEETQLSFAWKP-SKGAVSEFTSAMVKKYLHYIRSFDFKNVCLS 395 (584)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHH-T-CCCSEEEEECHHHHHHHHHTCC-SCCCTTCCHHHHHHHHHHHTTTSCTTTCEEE
T ss_pred EEEEEEcCCHHHHHHHHHHHHhc-C-CCceEEEEechhHHHHHhhccC-cccccchhhhhhHHHhhhhccCCCCCccEEE
Confidence 89999999999999999999886 3 6899999999865431000000 000000 000000013443456888
Q ss_pred EEEEeecCCCCChhhHHHHHHHHHHHhhhcCCceeeccchhhhhhhhhhhcccHHHHhhhhcCCC--cceecccCcccHH
Q 042782 356 CLEITKNYDESTADTTDQEVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSKGLWEVPH--PWLNLFIPKSRIA 433 (527)
Q Consensus 356 lle~~~~~~~~~~~~~~~~~~~ll~~l~~~~g~~~~~d~~~~~~~~~v~~~~~~~~~~~lW~~r~--~~~dv~VP~s~l~ 433 (527)
++|+ ++ +.++++++++.+.+.+...++..... ....+ |+.+....+.-++..|+... ...|++||+++++
T Consensus 396 lve~----~g-~~~~v~~~~~~~~~~~~~~g~~~~~~--~~~~l-W~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~ 467 (584)
T 2uuu_A 396 IIGF----EG-PKKVVDFHRTSVFDILSKNAAFGLGS--APGKT-WAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQ 467 (584)
T ss_dssp EEEE----EE-CHHHHHHHHHHHHHHHHTTTCEEEEE--ESTTH-HHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHH
T ss_pred EEEE----ec-ChHHHHHHHHHHHHHHHHCCCccchH--HHHHH-HHHhhhchHHHHhhhcccCCccccceEEeeHHHHH
Confidence 8995 44 35678888888888887655432211 11222 33322223333344454321 2469999999999
Q ss_pred HHHHHHHHhh----c-------------CccCCCc--eEEeeC---CCcccccccccCCChhhHHHHHHHhCCCCCCC--
Q 042782 434 DFDKGVFKGI----L-------------GNKTGGP--ILIYPM---NKHKWDNRSSVVTPDEDVFYLVAFLRSALDNG-- 489 (527)
Q Consensus 434 ~~~~~v~~~l----~-------------gh~g~G~--ih~~p~---~~~~~~~~~~~~~p~~~v~~~v~~l~~~~~~~-- 489 (527)
++++++. ++ . +|++||+ +|++.. ...+..++...+. +++++++..++|+++.+
T Consensus 468 ~~~~~~~-~~l~~~~~~~g~~~~~~~h~gH~gd~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~gGsiS~EHG 544 (584)
T 2uuu_A 468 TLWKDAK-QTFVKHFKDQGIPAWICAHISHTYTNGVCLYFIFASKQNENKDMAQYIEAK--KLMTDIIFKYGGSLSHHHG 544 (584)
T ss_dssp HHHHHHH-HHHHHHHHTTTCCEEEEEEEEEEETTEEEEEEEEEEECCTTCCTHHHHHHH--HHHHHHHHHTTCCCC----
T ss_pred HHHHHHH-HHHHhHHHhcCCeeEEEEEEEeecCCCcEEEEEeccCCCChhhHHHHHHHH--HHHHHHHHHcCCcEEeccc
Confidence 9999874 43 1 4667754 444332 1222223333343 88999999999999986
Q ss_pred cchhhHHHH
Q 042782 490 EEMQSLEYL 498 (527)
Q Consensus 490 ~~~~~~~~~ 498 (527)
.|..+.+.|
T Consensus 545 iG~~k~~~l 553 (584)
T 2uuu_A 545 VGYEHVPWM 553 (584)
T ss_dssp ---------
T ss_pred CCcccHHHH
Confidence 444444444
No 6
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=100.00 E-value=1.3e-46 Score=412.33 Aligned_cols=396 Identities=13% Similarity=0.058 Sum_probs=293.2
Q ss_pred CChHHHHccCCCCcEEcChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCc
Q 042782 60 MDPTELLRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQ 139 (527)
Q Consensus 60 ~~~~~l~~~~~~~~v~~d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~ 139 (527)
..+++|++++++++|.+|+.++..|++||+. +.+.|.+|++|+|++||+++|++|++ +++||+++|||||+.|++.
T Consensus 11 ~~~~~L~~~~g~~~v~~~~~~~~~y~~d~~~-~~~~p~~Vv~P~s~~eV~~iv~~a~~---~~~~v~~~GgGt~~~G~~~ 86 (571)
T 1f0x_A 11 AFLNELARLVGSSHLLTDPAKTARYRKGFRS-GQGDALAVVFPGSLLELWRVLKACVT---ADKIILMQAANTGLTEGST 86 (571)
T ss_dssp HHHHHHHHHHCGGGEECCHHHHHHHHBCSSS-CBBCCSEEECCSSHHHHHHHHHHHHH---TTCEEEEESSCCCSSSTTS
T ss_pred HHHHHHHHhcCCCeEEcCHHHHHHHhccccc-cCCCccEEEeeCCHHHHHHHHHHHHH---cCCCEEEECCCcCCCCCcc
Confidence 4678899998889999999999999999984 88999999999999999999999999 9999999999999999988
Q ss_pred CCC------cEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCCC-CCcCCC-cccccccc
Q 042782 140 TSN------GVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAP-KSWTDY-LYLSVGGT 211 (527)
Q Consensus 140 ~~~------gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p-~~~~~~-~~~TVGG~ 211 (527)
+.+ |++|||++||+ |+++|+ +.+|+|+||++|.+|.+++.++|+.| +++++. ..+||||+
T Consensus 87 ~~~~~~~r~gvvIdl~rmn~-----------I~~id~-~~~v~v~aGv~l~~L~~~l~~~Gl~~p~~~g~s~~~~tvGG~ 154 (571)
T 1f0x_A 87 PNGNDYDRDVVIISTLRLDK-----------LHVLGK-GEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGG 154 (571)
T ss_dssp CCBSCCSSCEEEEECTTCCC-----------EEEETT-TTEEEECTTCBHHHHHHHHGGGTEECSCCCGGGGGTCBHHHH
T ss_pred CCCcCCcCceEEEECcccCC-----------ceeECC-CCeEEEcCCcCHHHHHHHHHhcCccCCcCCCccCCCceeccc
Confidence 743 89999999999 678985 57899999999999999999999964 445332 35699999
Q ss_pred ccCCcccCCccccCCccC----------------cEeEEEEEeCCCcEEEcCC---------------C--CCc------
Q 042782 212 LSNAGISGQAFHQGPQIT----------------NVHELDVVTGKGELLTCSE---------------E--QNS------ 252 (527)
Q Consensus 212 ia~~g~G~~s~~~G~~~d----------------~V~~levV~~~G~v~~~~~---------------~--~~~------ 252 (527)
+++|++|..+.+||.+.| +|++++||++||++++++. + .++
T Consensus 155 ia~nagG~~~~~yG~~~d~~~~~~~~~~~~l~~~~vl~levVl~dG~i~~~~~~~~~~~~~~~~~~~~k~~~Gy~~~~~~ 234 (571)
T 1f0x_A 155 ICNNSGGSLVQRGPAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRHDGRHAHDYDYVHRVRD 234 (571)
T ss_dssp HHTTCCCSCTTSCSSCCSCEEEEEECTTSCEEEEECSSBCCCSSHHHHHHHHHTTCCCGGGBCCCSCCSSCTTHHHHHHC
T ss_pred ccCCCCcccccCCCchhhhhhhheeccCCceEEEEeeeEEEEcCCCcEEEecCccccccchhhhcccccccCCccccccc
Confidence 999988889999999999 9999999999999998762 1 234
Q ss_pred -----------chhhhh--hcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHHHHcCCCCCCchhhhccc
Q 042782 253 -----------GLFHAV--LGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYLISLHELPASQKFDYVEG 319 (527)
Q Consensus 253 -----------dL~~~~--~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~p~~~e~ld~ 319 (527)
||++++ +||+|+||| |+++||++|.|+....+.+.|++++++.+++..+++..+ ..|+++|+||.
T Consensus 235 ~d~~~p~~~~~Dl~~l~~a~GseGtlGV-t~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~p~a~E~~d~ 312 (571)
T 1f0x_A 235 IEADTPARYNADPDRLFESSGCAGKLAV-FAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHILANFE-NLPVAGEYMHR 312 (571)
T ss_dssp TTCSSCSCCTTCGGGCCSSTTCTTSSEE-EEEEEECEECCSSCEEEEEEESCHHHHHHHHHHHHHHCS-SCCSEEEEEEH
T ss_pred ccccccccccccHHHHHHhcCCCCceeE-EEEEEEEEecCCeEEEEEEEeCCHHHHHHHHHHHHHhCC-CCceEEEEECH
Confidence 999999 999999999 999999999999989999999999999999999985323 57899999998
Q ss_pred chhcch-hh----------hhh-----------ccccc-----c----------------CCCCC-cccccCCCCCceEE
Q 042782 320 FVIVDE-GL----------INN-----------WRSSF-----F----------------SPRNP-VKITSLGTDGGVLY 355 (527)
Q Consensus 320 ~~~~~~-~~----------~~~-----------~~~~~-----~----------------~~~~~-~~~~~l~~~~~~~l 355 (527)
..+... .. ... |...+ + .|++. .+...+....++++
T Consensus 313 ~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~k~~~~~~~~~~p~l~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~l 392 (571)
T 1f0x_A 313 DIYDIAEKYGKDTFLMIDKLGTDKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHL 392 (571)
T ss_dssp HHHHHHC---------------------------------------------------------CCHHHHHHHHHCSEEE
T ss_pred HHHHHHHHhcccccccccccCcccccchhcccchhhhhhcccccccccchhhhhhhhhhccccccchhhhcccccCceEE
Confidence 765211 00 000 00000 0 00000 00000011245789
Q ss_pred EEEEeecCCCCChhhHHHHHHHHHHHhhhcCCceeeccchhhhhhhhhhhcccHHHHhhhhcCCC---------cceecc
Q 042782 356 CLEITKNYDESTADTTDQEVESLLKKLNFIQSSVFTTDLLYVDFLDRVHKAELKLRSKGLWEVPH---------PWLNLF 426 (527)
Q Consensus 356 lle~~~~~~~~~~~~~~~~~~~ll~~l~~~~g~~~~~d~~~~~~~~~v~~~~~~~~~~~lW~~r~---------~~~dv~ 426 (527)
++|+ ++.++++.++.++++++.+ .|..+.......+.++..+.+ ....+|.+|+ -++|++
T Consensus 393 lve~----~g~~~~~~~~~l~~~~~~~---~g~~~~~~~~~~~~~~~~R~~----~~~~~~~~r~~~~~~~g~~~~~Dva 461 (571)
T 1f0x_A 393 LLKM----AGDGVGEAKSWLVDYFKQA---EGDFFVCTPEEGSKAFLHRFA----AAGAAIRYQAVHSDEVEDILALDIA 461 (571)
T ss_dssp EEEE----CTTHHHHHHHHHHHHHHHS---SCEEEECCHHHHHHHHHHHTT----HHHHHHHHHHHTTTTEEEEEEEEEE
T ss_pred EEEE----ecCcHHHHHHHHHHHHHHc---CCCeeecCccHHHHHHHHhhh----hhhHHHHhhhcchhhcCCceEEEEE
Confidence 9995 5655556666777777665 243321111111111111110 0122355442 257999
Q ss_pred cCcccHHHHHHHHHHhh---------cCccCCCceEEeeCCCcccccccccCCChhhHHHHHHHhCCCCCCC
Q 042782 427 IPKSRIADFDKGVFKGI---------LGNKTGGPILIYPMNKHKWDNRSSVVTPDEDVFYLVAFLRSALDNG 489 (527)
Q Consensus 427 VP~s~l~~~~~~v~~~l---------~gh~g~G~ih~~p~~~~~~~~~~~~~~p~~~v~~~v~~l~~~~~~~ 489 (527)
||++++++| +++.+.+ .||.|+||+|+.+..+...+ ...+ .++++.++..++|++|.+
T Consensus 462 vp~~~l~~~-~~~~~~l~~~~~~~~~~GH~g~g~~H~~~~~~~~~~--~~~i--~~~~~~~v~~~GGsisaE 528 (571)
T 1f0x_A 462 LRRNDTEWY-EHLPPEIDSQLVHKLYYGHFMCYVFHQDYIVKKGVD--VHAL--KEQMLELLQQRGAQYPAE 528 (571)
T ss_dssp CCTTCSCCS-CCCCHHHHTTEEEEEEEEETTTTEEEEEEEEETTCC--HHHH--HHHHHHHHHHTTCBSCSS
T ss_pred ecHHHhHHH-HHHHHHHHhhCccceeEEEEcCCceEEeeecCCchh--HHHH--HHHHHHHHHHcCCeEEee
Confidence 999999999 7652222 28999999999766432211 2233 389999999999999986
No 7
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=100.00 E-value=5.6e-43 Score=384.78 Aligned_cols=389 Identities=15% Similarity=0.040 Sum_probs=282.8
Q ss_pred ChHHHHccCCCCcEEcChhhHHH----hhhc------cCC--CCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEE
Q 042782 61 DPTELLRLGVYGQLSVDPFDVQT----ASLD------FGM--LSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISAR 128 (527)
Q Consensus 61 ~~~~l~~~~~~~~v~~d~~~~~~----~~~d------~~~--~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~r 128 (527)
.+++|++++++.+|.+|+..+.. |++| |+. .+...|.+|++|+|++||+++|++|++ +++||++|
T Consensus 24 ~~~~L~~~~g~~~v~~d~~~~~~~~~~y~~d~~~~d~~~~~~~~~~~p~~Vv~P~s~~eV~~iv~~a~~---~~~pv~~~ 100 (560)
T 1e8g_A 24 FIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPTHVMDQDYFLASAIVAPRNVADVQSIVGLANK---FSFPLWPI 100 (560)
T ss_dssp HHHHHHHHHCGGGEEECC-----CCBCSSSBCSSSCSSCCSCTTSSCCSEEECCSSHHHHHHHHHHHHH---HTCCEEEE
T ss_pred HHHHHHHhhCcccEecCHHHhhhhhhhhccccccccccccccccccCCcEEEeCCCHHHHHHHHHHHHH---cCCcEEEe
Confidence 36788888888899999999988 9988 654 478899999999999999999999999 99999999
Q ss_pred cCCCCCC-CCCcC--CCcEEEEc-CCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCC---CCCcC
Q 042782 129 GHGHSIN-GQAQT--SNGVVIQM-SGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLA---PKSWT 201 (527)
Q Consensus 129 G~G~s~~-g~~~~--~~gvvIdl-~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~---p~~~~ 201 (527)
|+|||+. |++.+ .+||+||| ++||+ |+++|+++.+++||||+++.+|++++.++|++ |++++
T Consensus 101 g~Gt~~~~gg~~p~~~~gvvidl~~~mn~-----------il~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~~~p~ 169 (560)
T 1e8g_A 101 SIGRNSGYGGAAPRVSGSVVLDMGKNMNR-----------VLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVP 169 (560)
T ss_dssp SSCCCTTTTTTCCSSTTCEEEECTTTCCC-----------EEEEETTTTEEEECTTCBHHHHHHHHHHTTCTTTEECCCC
T ss_pred cCCCcCCcCCCCCCcCCEEEEEchHhcCC-----------eEEEcCCCCEEEEeCCCCHHHHHHHHHHcCCccccCCCCC
Confidence 9999986 66553 48999999 99999 67999999999999999999999999999998 44555
Q ss_pred CCccccccccccCCcccCCccccCCccCcEeEEEEEeCCCcEEEcCCC--CC----------------cchhhhhhc---
Q 042782 202 DYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEE--QN----------------SGLFHAVLG--- 260 (527)
Q Consensus 202 ~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~--~~----------------~dL~~~~~G--- 260 (527)
+...+||||+++++|.|.. +||.++|+|++++||++||++++++.. ++ ..+|+++.|
T Consensus 170 ~~~~~tigG~~~~~g~g~~--~yG~~~d~v~~l~vVl~dG~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~G 247 (560)
T 1e8g_A 170 DLGGGSVLGNAVERGVGYT--PYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFG 247 (560)
T ss_dssp SSTTSBHHHHHHTTCBCSS--TTCBTGGGEEEEEEEETTSCEEECGGGGSCCCCCGGGTTCCGGGSCCCTTTTTCSCCSS
T ss_pred CCCccchhhhccCCCCCcc--cceeHHHheeeeEEEeCCCCEEEecCcccCcccccccccchhhhhhhhcccccccccCC
Confidence 5457899999987775543 999999999999999999999999863 23 233433333
Q ss_pred -------CCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHH---HHHHcCCCCCCchhhhcccchhc-chhhhh
Q 042782 261 -------GLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQE---YLISLHELPASQKFDYVEGFVIV-DEGLIN 329 (527)
Q Consensus 261 -------s~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~---~l~~~~~~~~p~~~e~ld~~~~~-~~~~~~ 329 (527)
++|+|||||+++|||+|.|+...++.+.|++++++.+++. .++.. + +.|+++|++|...-. .-...+
T Consensus 248 y~l~~L~~~GtlGiIt~~tl~l~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~-~-~~p~~~el~d~~~~~~~l~~~~ 325 (560)
T 1e8g_A 248 PYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLG-M-ALQNVPTIRHILLDAAVLGDKR 325 (560)
T ss_dssp CCCGGGGSSSSSEEEEEEEEECEECCSCEEEEEEEECSTTHHHHHHHHHHHHHHT-T-SSCSCCEEEEHHHHHHHHCCGG
T ss_pred cchhcccccCcEEEEEEEEEEEEeCCCceEEEEEEcCCHHHHHHHHHHHHHHHHc-C-CCcceeEEechHHHhhhhhhhh
Confidence 3589999999999999999999999999999999777654 45554 3 678999999987310 000011
Q ss_pred hccccccCCCCCcccccCCC-----------CCceEEEEEEeecCCCCChhhHHHHHHHHHHHhhhcCCcee--eccchh
Q 042782 330 NWRSSFFSPRNPVKITSLGT-----------DGGVLYCLEITKNYDESTADTTDQEVESLLKKLNFIQSSVF--TTDLLY 396 (527)
Q Consensus 330 ~~~~~~~~~~~~~~~~~l~~-----------~~~~~llle~~~~~~~~~~~~~~~~~~~ll~~l~~~~g~~~--~~d~~~ 396 (527)
. +.... .++|. .+.|++++|+ ++ +++.++++++.+.+.+...++..+ ..+...
T Consensus 326 ~-----~~~~~----~~~p~~~~~~l~~~~~~~~~~l~~e~----~g-~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~e 391 (560)
T 1e8g_A 326 S-----YSSRT----EPLSDEELDKIAKQLNLGRWNFYGAL----YG-PEPIRRVLWETIKDAFSAIPGVKFYFPEDTPE 391 (560)
T ss_dssp G-----TCCCS----SCCCHHHHHHHHHHHTCCSEEEEEEE----ES-CHHHHHHHHHHHHHHHTTSTTCEEECGGGSCT
T ss_pred h-----hccCC----CCCCHHHHHHHHhhcCCCceEEEEEE----eC-CHHHHHHHHHHHHHHHHhCCCceeeccccchh
Confidence 1 11100 11221 1357899995 45 567788888888888875554322 223333
Q ss_pred hhhhhhhhhcc----c--HHHHhhhhcC--CCcceecccCc--ccHHHHHHHHHHhhc----------CccCCCceEEee
Q 042782 397 VDFLDRVHKAE----L--KLRSKGLWEV--PHPWLNLFIPK--SRIADFDKGVFKGIL----------GNKTGGPILIYP 456 (527)
Q Consensus 397 ~~~~~~v~~~~----~--~~~~~~lW~~--r~~~~dv~VP~--s~l~~~~~~v~~~l~----------gh~g~G~ih~~p 456 (527)
.+.||. +... . ...+...|.. .+.|.|++||+ ++++++++.+ +++. +|+||||+|+..
T Consensus 392 ~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~vP~~~~~l~~~~~~~-~~~~~~~g~~~~~~gH~gdGnlH~~i 469 (560)
T 1e8g_A 392 NSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVT-KKRCQEAGLDFIGTFTVGMREMHHIV 469 (560)
T ss_dssp TCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSSHHHHHHHHHHH-HHHHHHHTCCCCEEEEECSSCEEEEE
T ss_pred hhhHHH-HHhhcccCchhhhhccccccCCCceEEEeeecCCCHHHHHHHHHHH-HHHHHHcCCceEEEEEecCCeEEEEe
Confidence 333333 2111 0 1111234543 23578999999 9999999988 4653 899999999876
Q ss_pred C-----CCcccccccccCCChhhHHHHHHHhCCC
Q 042782 457 M-----NKHKWDNRSSVVTPDEDVFYLVAFLRSA 485 (527)
Q Consensus 457 ~-----~~~~~~~~~~~~~p~~~v~~~v~~l~~~ 485 (527)
+ .+.++.++...+. ++++..+.+.|..
T Consensus 470 ~~~~~~~~~~~~~~~~~~~--~~l~~~~~eHGiG 501 (560)
T 1e8g_A 470 CIVFNKKDLIQKRKVQWLM--RTLIDDCAANGWG 501 (560)
T ss_dssp EEEEETTCHHHHHHHHHHH--HHHHHHHHHTTCC
T ss_pred cccCCCCCHHHHHHHHHHH--HHHHHHHHHcCCc
Confidence 2 2223334444443 7889988888765
No 8
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=100.00 E-value=1.1e-42 Score=379.45 Aligned_cols=391 Identities=13% Similarity=0.093 Sum_probs=281.4
Q ss_pred ChHHHHccCCCCcEEcChhhHHHhhhccCCC--CCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCC-CC
Q 042782 61 DPTELLRLGVYGQLSVDPFDVQTASLDFGML--SRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSIN-GQ 137 (527)
Q Consensus 61 ~~~~l~~~~~~~~v~~d~~~~~~~~~d~~~~--~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~-g~ 137 (527)
.+++|++++....|.+++..+..|++||+.. +...|.+|++|+|++||+++|++|++ +++||+++|+|||+. |+
T Consensus 20 ~~~~L~~~l~~~~v~~~~~~~~~y~~d~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~---~~~pv~~~g~G~~~~~g~ 96 (520)
T 1wvf_A 20 AVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNE---HKIPIWTISTGRNFGYGS 96 (520)
T ss_dssp HHHHHHHHHCGGGEECSHHHHHHHHCCCSSSCGGGGCCSEEEECCSHHHHHHHHHHHHH---HTCCEEEESSCCCTTTTT
T ss_pred HHHHHHHhcCCCeEecCcHHHHHHhcccccccccCCCCCEEEecCCHHHHHHHHHHHHH---CCCcEEEEcCCCCCCCCC
Confidence 3567888888788999999999999999875 67899999999999999999999999 999999999999997 76
Q ss_pred CcC--CCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCC-CCC-cCCCcccccccccc
Q 042782 138 AQT--SNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLA-PKS-WTDYLYLSVGGTLS 213 (527)
Q Consensus 138 ~~~--~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~-p~~-~~~~~~~TVGG~ia 213 (527)
+.+ .+||+|||++||+ |+++|+++.+++||||++|.+|.+++.++|++ |++ +++...+||||+++
T Consensus 97 ~~~~~~~gvvidl~~m~~-----------i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~~~p~~~~~~igG~~~ 165 (520)
T 1wvf_A 97 AAPVQRGQVILDLKKMNK-----------IIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSAPSAIAGPVGNTM 165 (520)
T ss_dssp TSCSSTTCEEEECTTCCC-----------EEEEETTTTEEEECTTCCHHHHHHHHHHTTCSEECCCCSSCTTCCHHHHHH
T ss_pred CCCCCCCeEEEECCCCCc-----------eEEECCCCCEEEECCCCCHHHHHHHHHHcCCcccCCCCCCCCeeeeeeccc
Confidence 553 5899999999999 56999999999999999999999999999997 544 34444789999998
Q ss_pred CCcccCCccccCCccCcEeEEEEEeCCCcEEEcCC--CCCcchhhhhhcCCC----------CeEEEEeEEEeeecCCce
Q 042782 214 NAGISGQAFHQGPQITNVHELDVVTGKGELLTCSE--EQNSGLFHAVLGGLG----------QFGIITRARISLEPAPKR 281 (527)
Q Consensus 214 ~~g~G~~s~~~G~~~d~V~~levV~~~G~v~~~~~--~~~~dL~~~~~Gs~G----------~lGIIt~atl~l~p~p~~ 281 (527)
++|.|.. +||.++|+|+++|||++||++++++. .+++|+|++.+|+.| +|||||+++|||+|.|+.
T Consensus 166 ~~g~g~~--~yG~~~d~v~~~evV~~dG~v~~~~~~~~~~~~l~~~~~~~~Gy~l~~l~~g~~lGiVt~~~l~l~p~p~~ 243 (520)
T 1wvf_A 166 DRGVGYT--PYGEHFMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPKPPV 243 (520)
T ss_dssp TTCBCSS--TTCBGGGGEEEEEEECTTSCEEECGGGGSTTCSCTTTCSCCSSCCCHHHHTTSSSCEEEEEEEECEECCSE
T ss_pred CCCcCCc--cccchhhcEeeeEEEcCCCcEEEeCCCcCCCchhHhhhcCCCCcchhhhccCCceEEEEEEEEEEEecCCe
Confidence 7775553 99999999999999999999999975 356788777776654 999999999999999999
Q ss_pred EEEEEEEeCCHHHHHH---HHHHHHHcCCCCCCchhhhcccchhcchhhhhh-ccccccCCCCCcccccCCC--------
Q 042782 282 VRWIRVLYSDFSTFTR---DQEYLISLHELPASQKFDYVEGFVIVDEGLINN-WRSSFFSPRNPVKITSLGT-------- 349 (527)
Q Consensus 282 ~~~~~~~f~~~~~~~~---~~~~l~~~~~~~~p~~~e~ld~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-------- 349 (527)
...+.+.|++++++.+ ++..+.+. + +.|+++|+||...+... .. ....++... ..+|.
T Consensus 244 ~~~~~~~f~~~~~~~~~~~~~~~~~~~-~-~~p~a~El~d~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~ 313 (520)
T 1wvf_A 244 FKPFEVIFEDEADIVEIVDALRPLRMS-N-TIPNSVVIASTLWEAGS---AHLTRAQYTTEP-----GHTPDSVIKQMQK 313 (520)
T ss_dssp EEEEEEEECCGGGHHHHHHHHHHHHHT-T-SSCSCEEEEEHHHHHHH---TTCCGGGTCCCS-----SSCCHHHHHHHHH
T ss_pred EEEEEEEeCCHHHHHHHHHHHHHHHHc-C-CCccceEeccHHHHHHH---hcccchhhccCC-----CCCCHHHHHHHHH
Confidence 8888999999888766 44555554 3 67899999998744211 00 000000100 01111
Q ss_pred ---CCceEEEEEEeecCCCCChhhHHHHHHHHHHHhhhcCCceeec--cchhhhhhhhhhhc------ccHHHHhhhhcC
Q 042782 350 ---DGGVLYCLEITKNYDESTADTTDQEVESLLKKLNFIQSSVFTT--DLLYVDFLDRVHKA------ELKLRSKGLWEV 418 (527)
Q Consensus 350 ---~~~~~llle~~~~~~~~~~~~~~~~~~~ll~~l~~~~g~~~~~--d~~~~~~~~~v~~~------~~~~~~~~lW~~ 418 (527)
...+.+++|+ ++ ++++++++++.+.+.+...++..+.. +......|+ .+.. .........|.-
T Consensus 314 ~~~~~~~~l~~~~----~g-~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~-~R~~~~~~~~~~~~~~~~~~~~ 387 (520)
T 1wvf_A 314 DTGMGAWNLYAAL----YG-TQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFK-YRAQLMSGVPNLQEFGLYNWRG 387 (520)
T ss_dssp HHCCCSEEEEEEE----EE-SHHHHHHHHHHHHHHHHHHTCCEEEEHHHHTTCTTHH-HHHHHHTTCCCCGGGGGGGSSC
T ss_pred hcCCCceEEEEEE----eC-CHHHHHHHHHHHHHHHHHcCCeEEEecccchhhhHHH-HHHHhhccCchhhhhccccccC
Confidence 1357787885 44 45677878877777775544322211 011111111 1100 000001112321
Q ss_pred C--CcceecccCc--ccHHHHHHHHHHhhc----------CccCCCceEEee--CC---CcccccccccCCChhhHHHHH
Q 042782 419 P--HPWLNLFIPK--SRIADFDKGVFKGIL----------GNKTGGPILIYP--MN---KHKWDNRSSVVTPDEDVFYLV 479 (527)
Q Consensus 419 r--~~~~dv~VP~--s~l~~~~~~v~~~l~----------gh~g~G~ih~~p--~~---~~~~~~~~~~~~p~~~v~~~v 479 (527)
. .-|.|++||. ++++++++.+ +++. +|+||||+|++. .. +.++.++...+. ++++..+
T Consensus 388 ~~~~~~~d~~vp~~~~~l~~~~~~~-~~~~~~~~~~~~~~gh~gdGnlH~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~ 464 (520)
T 1wvf_A 388 GGGSMWFAPVSEARGSECKKQAAMA-KRVLHKYGLDYVAEFIVAPRDMHHVIDVLYDRTNPEETKRADACF--NELLDEF 464 (520)
T ss_dssp TEEEEEECBEEESCHHHHHHHHHHH-HHHHHHTTCCCCEEEEECSSEEEEEEEEEEETTCHHHHHHHHHHH--HHHHHHH
T ss_pred CCceEEeccccCCCHHHHHHHHHHH-HHHHHHcCCCeeEeecccCcceeeeeccccCCCCHHHHHHHHHHH--HHHHHHH
Confidence 0 1246888998 9999999987 4543 799999999864 22 222223333343 7888888
Q ss_pred HHhCCCC
Q 042782 480 AFLRSAL 486 (527)
Q Consensus 480 ~~l~~~~ 486 (527)
.++|...
T Consensus 465 ~ehG~G~ 471 (520)
T 1wvf_A 465 EKEGYAV 471 (520)
T ss_dssp HHTTCCB
T ss_pred HHcCCCc
Confidence 8877643
No 9
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=100.00 E-value=3.1e-34 Score=308.37 Aligned_cols=219 Identities=21% Similarity=0.299 Sum_probs=190.7
Q ss_pred CCCCcEEc-ChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEE
Q 042782 69 GVYGQLSV-DPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQ 147 (527)
Q Consensus 69 ~~~~~v~~-d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvId 147 (527)
.+.+.|.+ ++..+....+.|+..+...|.+|++|+|++||+++|++|++ +++|+++||||||+.|.+...+|++||
T Consensus 11 ~~~~~v~~p~~~~y~~~~~~~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~---~~~~~~v~ggGh~~~~~~~~~~gvvi~ 87 (459)
T 2bvf_A 11 SIQGEVIYPDDSGFDAIANIWDGRHLQRPSLIARCLSAGDVAKSVRYACD---NGLEISVRSGGHNPNGYATNDGGIVLD 87 (459)
T ss_dssp CCSSEEECTTSTTHHHHHCCSCTTCCCCCSEEEECCSHHHHHHHHHHHHH---HTCCEEEESSCCCTTCTTCCSSSEEEE
T ss_pred cCCceEECCCCccHHHHHHHhhhhccCCCCEEEecCCHHHHHHHHHHHHH---cCCcEEEEcCCcCCCCccccCCeEEEE
Confidence 45667776 34456667789998899999999999999999999999999 999999999999999887556899999
Q ss_pred cCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCCccccCCc
Q 042782 148 MSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQ 227 (527)
Q Consensus 148 l~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~ 227 (527)
|++||+ +++|+++.+|+|+||++|.+|.+++.++|++.+. +....++|||.+.++|+|..+.+||.+
T Consensus 88 l~~l~~------------i~~d~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~-g~~~~~gi~G~~~gGg~g~~~~~~G~~ 154 (459)
T 2bvf_A 88 LRLMNS------------IHIDTAGSRARIGGGVISGDLVKEAAKFGLAAVT-GMHPKVGFCGLALNGGVGFLTPKYGLA 154 (459)
T ss_dssp CTTCCC------------EEEETTTTEEEEETTCBHHHHHHHHHTTTEEECC-CSCTTSBHHHHHTTCCCCTTHHHHCCG
T ss_pred CCCCCC------------EEECCCCCEEEECCCCCHHHHHHHHHHcCCEecC-CCCCCcccceeecCCCCccccccccCH
Confidence 999999 6899988999999999999999999999997443 233567999999999999999999999
Q ss_pred cCcEeEEEEEeCCCcEEEcCCCCCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCC--HH--HHHHHHHHHH
Q 042782 228 ITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSD--FS--TFTRDQEYLI 303 (527)
Q Consensus 228 ~d~V~~levV~~~G~v~~~~~~~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~--~~--~~~~~~~~l~ 303 (527)
+|+|+++|||++||+++++++.+|+||||+++||+|+|||||+++||++|.|.......+.|+. .+ +++++...+.
T Consensus 155 ~d~v~~~~vV~~~G~i~~~~~~~~~dLf~a~rg~~g~~GiVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (459)
T 2bvf_A 155 SDNILGATLVTATGDVIYCSDDERPELFWAVRGAGPNFGVVTEVEVQLYELPRKMLAGFITWAPSVSELAGLLTSLLDAL 234 (459)
T ss_dssp GGGEEEEEEECTTSCEEEEESSSSHHHHHHHHHHGGGTCEEEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred hHhEEEEEEEcCCCeEEEeCCCCChhhHhHhhccCCccEEEEEEEEEEEECCCcEEEEEEEechHHhhHHHHHHHHHHHH
Confidence 9999999999999999999998899999999999999999999999999997776667777764 33 4444444443
No 10
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=100.00 E-value=1.3e-34 Score=314.55 Aligned_cols=228 Identities=18% Similarity=0.175 Sum_probs=188.4
Q ss_pred CCChHHHHccCCCCcEEcChh-hH----HHhhhc--cCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCC
Q 042782 59 TMDPTELLRLGVYGQLSVDPF-DV----QTASLD--FGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHG 131 (527)
Q Consensus 59 ~~~~~~l~~~~~~~~v~~d~~-~~----~~~~~d--~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G 131 (527)
.+.++.|.+.+.++.|.++.+ .+ ..+.++ |+.....+|.+||+|+|++||+++|++|++ +++||++||||
T Consensus 9 ~~f~~~L~~~~~~~~v~~~~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~p~~~~~v~~~v~~a~~---~~~~~~~r~gG 85 (500)
T 3tsh_A 9 EDFLGCLVKEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRR---HSVRIRVRSGG 85 (500)
T ss_dssp CHHHHHHHHHSCGGGEEETTSTTHHHHHHTTCCCTTTTSTTSCCCSEEECCSSHHHHHHHHHHHHH---TTCEEEEESSC
T ss_pred HHHHHHHHhhCCCCEEECCCCCccHHHHHhhhccccccCCCCCCceEEEEcCCHHHHHHHHHHHHH---CCCcEEEEcCC
Confidence 356777888777777776422 22 222222 887778899999999999999999999999 99999999999
Q ss_pred CCCCCCCcC----CCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCC-CCCcCCCccc
Q 042782 132 HSINGQAQT----SNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLA-PKSWTDYLYL 206 (527)
Q Consensus 132 ~s~~g~~~~----~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~-p~~~~~~~~~ 206 (527)
||+.|.+.+ .+|++|||++||+ +++|+++++++||||++|.+|++++.++|+. +...+....+
T Consensus 86 h~~~g~s~~~~~~~~~~~idl~~~~~------------v~~d~~~~~~~v~~G~~~~~~~~~l~~~g~~~~~~~g~~~~v 153 (500)
T 3tsh_A 86 HDYEGLSYRSLQPETFAVVDLNKMRA------------VWVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTI 153 (500)
T ss_dssp CCTTCTTTCCSSSCCEEEEECTTCCC------------EEEETTTTEEEEETTSBHHHHHHHHHHHCTTEECCCCSSTTS
T ss_pred cCCCCCcCCCCCcCCeEEEECcCCCC------------EEECCCCCEEEEccCcCHHHHHHHHHHhCCCcccCCCCCCCc
Confidence 999876532 5789999999998 7999999999999999999999999999964 2223444567
Q ss_pred cccccccCCcccCCccccCCccCcEeEEEEEeCCCcEEEcCCCCCcchhhhhhc-CCCCeEEEEeEEEeeecCCceEEEE
Q 042782 207 SVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLG-GLGQFGIITRARISLEPAPKRVRWI 285 (527)
Q Consensus 207 TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~~~~dL~~~~~G-s~G~lGIIt~atl~l~p~p~~~~~~ 285 (527)
++||.++++|+|..+.+||.++|||+++|||++||++++.+ .+++||||+++| |+|+|||||+++||++|.|+.+..+
T Consensus 154 gvgG~~~~gg~g~~~~~~G~~~d~v~~~~vV~a~G~i~~~~-~~~~dl~~a~~gg~gg~fGvvt~~~~~~~p~p~~~~~~ 232 (500)
T 3tsh_A 154 GVGGNFAGGGFGMLLRKYGIAAENVIDVKLVDANGKLHDKK-SMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIF 232 (500)
T ss_dssp BHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTSCEECHH-HHCHHHHHHHTTSCSSTTCEEEEEEEECEECCSCEEEE
T ss_pred eecCccccccCCccccccCChhhheeeEEEECCCceEEECC-CCChHHHHHHHhhcccceEEEEEEEEEEEeCCCeEEEE
Confidence 89999999999999999999999999999999999988654 468899999995 5579999999999999999988777
Q ss_pred EEEeCCHHHHHHHHHHH
Q 042782 286 RVLYSDFSTFTRDQEYL 302 (527)
Q Consensus 286 ~~~f~~~~~~~~~~~~l 302 (527)
...+...+.+.+.+...
T Consensus 233 ~~~~~~~~~~~~~~~~~ 249 (500)
T 3tsh_A 233 KISKTVSEGAVDIINKW 249 (500)
T ss_dssp EEEEETTTTHHHHHHHH
T ss_pred EEecCcHHHHHHHHHHH
Confidence 77766555555544433
No 11
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=100.00 E-value=3e-33 Score=301.36 Aligned_cols=199 Identities=19% Similarity=0.233 Sum_probs=178.7
Q ss_pred ChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcC--CCcEEEEcCCCCCC
Q 042782 77 DPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQT--SNGVVIQMSGSRGR 154 (527)
Q Consensus 77 d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~--~~gvvIdl~~mn~~ 154 (527)
++..+....+.|+.++...|.+|++|+|++||+++|++|++ +++||++||||||+.|.+.. .+|++|||++||+
T Consensus 18 ~~~~y~~~~~~~n~~~~~~p~~vv~P~s~~dv~~~v~~a~~---~~~~v~v~ggGh~~~g~~~~~~~~~vvIdl~~~~~- 93 (473)
T 3rja_A 18 GTADYERDVEPFNIRLPYIPTAIAQTQTTAHIQSAVQCAKK---LNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMID- 93 (473)
T ss_dssp TSHHHHHHTCCSBTTSCCCCSEEEECCSHHHHHHHHHHHHH---TTCCEEEESSCCCTTCGGGTSSSSCEEEECTTCCC-
T ss_pred CCCchHHHHHHhhcccCCCCCEEEEeCCHHHHHHHHHHHHH---cCCeEEEEcCCCCCCCCcccCCCCeEEEECCCCCc-
Confidence 44567777889998899999999999999999999999999 99999999999999865542 4789999999999
Q ss_pred CCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCC-CCCCCcCCCccccccccccCCcccCCccccCCccCcEeE
Q 042782 155 RLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHG-LAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHE 233 (527)
Q Consensus 155 ~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~G-l~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~ 233 (527)
+.++|+++.+++|+||++|.+|.+++.++| +..+. +....++|||+++++|+|..+.+||.+.|+|++
T Consensus 94 ----------i~~vd~~~~~v~v~aG~~~~~l~~~l~~~G~~~~p~-G~~~~vgvgG~~~ggg~G~~~~~~G~~~D~v~~ 162 (473)
T 3rja_A 94 ----------VISYNDKTGIAHVEPGARLGHLATVLNDKYGRAISH-GTCPGVGISGHFAHGGFGFSSHMHGLAVDSVVG 162 (473)
T ss_dssp ----------EEEEETTTTEEEECTTCBHHHHHHHHHHHHSEECCC-CSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEE
T ss_pred ----------eEEEcCCCCEEEECCCCCHHHHHHHHHHcCCEEecc-CCCCCcEeeeeccCCCCCcccccccchHhheee
Confidence 445999999999999999999999999999 65433 344567999999999999999999999999999
Q ss_pred EEEEeCCCcEEEcCCCCCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeC
Q 042782 234 LDVVTGKGELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYS 290 (527)
Q Consensus 234 levV~~~G~v~~~~~~~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~ 290 (527)
+|||++||+++++++++|+||||+++||+|+|||||+++|||+|.|+...++.+.|.
T Consensus 163 ~~vV~a~G~v~~~~~~~~~dLf~a~rG~~g~~GIVt~~~l~l~p~p~~~~~~~~~~~ 219 (473)
T 3rja_A 163 VTVVLADGRIVEASATENADLFWGIKGAGSNFGIVAVWKLATFPAPKVLTRFGVTLN 219 (473)
T ss_dssp EEEECTTSCEEEEETTBSHHHHHHHHHHGGGTCEEEEEEEECEECCSCEEEEEEECC
T ss_pred EEEEecCCeEEEeCCCCCcchhhcccCCCCceEEEEEEEEEEEeCCCceEEEEEEec
Confidence 999999999999998889999999999999999999999999999988777766664
No 12
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A
Probab=100.00 E-value=3.1e-33 Score=301.47 Aligned_cols=206 Identities=23% Similarity=0.282 Sum_probs=185.2
Q ss_pred HHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcC--CceEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCCCCCC
Q 042782 82 QTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAH--GFTISARGHGHSINGQAQTSNGVVIQMSGSRGRRLGSS 159 (527)
Q Consensus 82 ~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~--~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~~~~~~~ 159 (527)
..+.++|++ +...|.+|++|+|++||+++|++|++ + ++|++++|+|||+.+.+...+|++|||++||+
T Consensus 30 ~~~~~~W~~-~~~~p~~vv~P~s~eev~~~v~~a~~---~~~~~~v~~~G~G~s~~~~~~~~~gvvIdl~~l~~------ 99 (481)
T 4feh_A 30 ATRLTGWGR-TAPSVANVLRTPDAEMIVKAVARVAE---SGGGRGAIARGLGRSYGDNAQNGGGLVIDMTPLNT------ 99 (481)
T ss_dssp EEEECCTTC-CSCEEEEEEECSCHHHHHHHHHHHHT---TTCTTCEEEECSSCSSSSTTCCTTSEEEECTTCCC------
T ss_pred cceeecccC-CCCCCCEEEeCCCHHHHHHHHHHHHH---cCCCceEEEEeCCcCCCCCCCCcCeEEEECccCCC------
Confidence 456789976 68999999999999999999999998 8 79999999999998877656899999999999
Q ss_pred CCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCCccccCCccCcEeEEEEEeC
Q 042782 160 TPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTG 239 (527)
Q Consensus 160 ~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~ 239 (527)
++++|+++.+|+|+||++|.+|.+++.++|++++..++...+||||+|+++++|..+.+||.+.|+|+++++|++
T Consensus 100 -----i~~~d~~~~~v~v~aGv~l~~L~~~l~~~Gl~l~~~~g~~~~tvGGaia~~a~G~~~~~~G~~~d~V~~~evV~~ 174 (481)
T 4feh_A 100 -----IHSIDADTKLVDIDAGVNLDQLMKAALPFGLWVPVLPGTRQVTVGGAIACDIHGKNHHSAGSFGNHVRSMDLLTA 174 (481)
T ss_dssp -----EEEEETTTTEEEEETTCBHHHHHHHHGGGTEECSCCCSCSCCBHHHHHHTTCCCTTHHHHCCGGGGEEEEEEECT
T ss_pred -----ceEEcCCCCEEEEcCCccHHHHHHHHHHcCCEEEEeCCcCccccCCccccccCCCCcccCCCccceEeEEEEEeC
Confidence 679999999999999999999999999999986666666778999999998878777999999999999999999
Q ss_pred CCcEEEcCCC-CCcchhhhhhcCCCCeEEEEeEEEeeecCCce-EEEEEEEeCCHHHHHHHHHHH
Q 042782 240 KGELLTCSEE-QNSGLFHAVLGGLGQFGIITRARISLEPAPKR-VRWIRVLYSDFSTFTRDQEYL 302 (527)
Q Consensus 240 ~G~v~~~~~~-~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~-~~~~~~~f~~~~~~~~~~~~l 302 (527)
||+++++++. +|+|||++++||+|++||||+++|++.|.|+. .......+.+++++++..+..
T Consensus 175 dG~v~~~s~~~~~~dLf~a~rgs~G~~GIIt~~tl~l~p~~~~~~~~~~~~~~~l~~~~~~~~~~ 239 (481)
T 4feh_A 175 DGEIRHLTPTGEDAELFWATVGGNGLTGIIMRATIEMTPTSTAYFIADGDVTASLDETIALHSDG 239 (481)
T ss_dssp TSCEEEECSSSTTHHHHHHHTTCTTTTCEEEEEEEECEECSCSEEEEEEEECSSHHHHHHHHSSS
T ss_pred CCCEEEeCCCCCChHHHHHhhccCCCceEEEEEEEEEEeCCccEEEEEEEeCCCHHHHHHHHHHH
Confidence 9999999998 89999999999999999999999999999854 334456788999888876543
No 13
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Probab=100.00 E-value=6.7e-33 Score=300.99 Aligned_cols=212 Identities=20% Similarity=0.254 Sum_probs=178.9
Q ss_pred hHHHHccCCCCc--EEc-ChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCC
Q 042782 62 PTELLRLGVYGQ--LSV-DPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQA 138 (527)
Q Consensus 62 ~~~l~~~~~~~~--v~~-d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~ 138 (527)
+++|++.+.+.. +.+ +...+....+.|+..+...|.+|++|+|++||+++|++|++ +++|+++||||||+.+.+
T Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~---~~~~~~v~ggGh~~~~~~ 82 (503)
T 1zr6_A 6 FNSINACLAAADVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLD---AGVQISAKGGGHSYGSYG 82 (503)
T ss_dssp TCHHHHHHHHTTCEECCTTSHHHHHHTSCSBGGGCCCCSEEEECCSHHHHHHHHHHHHH---HTCCEEEESSCCCTTCTT
T ss_pred HHHHHHhhCcCCceecCCCccchHHHhhhhhhcccCCCCEEEEeCCHHHHHHHHHHHHH---cCCeEEEECCCcCCCCCc
Confidence 345555544322 322 22344555677887788999999999999999999999999 999999999999999866
Q ss_pred cC--CCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhC-CCCCCCcCCCccccccccccCC
Q 042782 139 QT--SNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEH-GLAPKSWTDYLYLSVGGTLSNA 215 (527)
Q Consensus 139 ~~--~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~-Gl~p~~~~~~~~~TVGG~ia~~ 215 (527)
.+ .+|++|||++||+ +++| ++.+|+|+||++|.+|.+++.++ |+..+. +....++|||.+..+
T Consensus 83 ~~~~~~gvvIdl~~l~~------------i~~d-~~~~v~v~aG~~~~~l~~~l~~~~gl~~~~-G~~~~vgvgG~~~gG 148 (503)
T 1zr6_A 83 FGGEDGHLMLELDRMYR------------VSVD-DNNVATIQGGARLGYTALELLDQGNRALSH-GTCPAVGVGGHVLGG 148 (503)
T ss_dssp TTSSSSCEEEECTTCCC------------EEEC-TTSCEEEETTCBHHHHHHHHHHTTSEECCC-CSCTTSBHHHHHHHC
T ss_pred ccCCCCcEEEECccCCC------------EEEC-CCCeEEEecCCCHHHHHHHHHHcCCEEeCC-CCCCcCchhhhhcCC
Confidence 54 4689999999999 5898 77899999999999999999665 476433 233467899999999
Q ss_pred cccCCccccCCccCcEeEEEEEeCCCcEEEcCCCCCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeC
Q 042782 216 GISGQAFHQGPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYS 290 (527)
Q Consensus 216 g~G~~s~~~G~~~d~V~~levV~~~G~v~~~~~~~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~ 290 (527)
|+|..+.+||.++|+|+++|||++||+++++++.+|+||||+++||+|+|||||+++||++|.|+...++.+.|.
T Consensus 149 g~g~~s~~~G~~~D~v~~~~vV~a~G~i~~~~~~~~~dL~~a~rG~~g~~GIVt~~~l~l~p~~~~~~~~~~~~~ 223 (503)
T 1zr6_A 149 GYGFATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAPEIITTYQVTTT 223 (503)
T ss_dssp CCSTTHHHHCCGGGGEEEEEEECTTSCEEEEBTTBSHHHHHHHTTCCSSSCEEEEEEECCEECCSCEEEEEEEEC
T ss_pred CCCcccccccChhheEEEEEEEecCCCEEEeCCCCCccHHHHHhccCCCcEEEEEEEEEEEecCceeEEEEEEEe
Confidence 999999999999999999999999999999998889999999999999999999999999999987777666663
No 14
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A*
Probab=100.00 E-value=1.4e-32 Score=297.28 Aligned_cols=200 Identities=21% Similarity=0.268 Sum_probs=175.2
Q ss_pred hccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcC--CCcEEEEcCCCCCCCCCCCCCCC
Q 042782 86 LDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQT--SNGVVIQMSGSRGRRLGSSTPAA 163 (527)
Q Consensus 86 ~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~--~~gvvIdl~~mn~~~~~~~~~~~ 163 (527)
..|+......|.+|++|+|++||+++|++|++ +++||++||||||+.|.+.. .+|++|||++||+
T Consensus 36 ~r~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~---~~~~v~vrGgGh~~~g~~~~~~~ggvvIdl~~m~~---------- 102 (495)
T 3fw9_A 36 PLFQNSLISKPSAIILPGSKEELSNTIRCIRK---GSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNR---------- 102 (495)
T ss_dssp GGGCSTTSCCCSEEECCCSHHHHHHHHHHHHT---SSCEEEEESSCCCTTCTTSCCSSCEEEEECTTCCC----------
T ss_pred cccccccCCCCCEEEecCCHHHHHHHHHHHHH---cCCeEEEECCCcCCCCccccCCCCeEEEECCCCCc----------
Confidence 57887788999999999999999999999999 99999999999999988765 3689999999999
Q ss_pred cceEEeCCCcEEEEeCCccHHHHHHHHHhC--CCCCCCcCCCccccccccccCCcccCCccccCCccCcEeEEEEEeCCC
Q 042782 164 LRPHVYEKERYVDVWGGELWIDVLRSTLEH--GLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKG 241 (527)
Q Consensus 164 ~ii~id~~~~~v~V~aGv~~~~l~~~l~~~--Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G 241 (527)
+++|+++.+++||||+++.+|.+++.++ |+..+. +....++|||+++++|+|..+.+||.++|+|++++||++||
T Consensus 103 --i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~-G~~~~vgigG~~~gGg~G~~~~~~G~~~D~v~~~~vV~adG 179 (495)
T 3fw9_A 103 --VSIDLESETAWVESGSTLGELYYAITESSSKLGFTA-GWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANG 179 (495)
T ss_dssp --EEEETTTTEEEEETTCBHHHHHHHHHHHCSSEECCC-CSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTC
T ss_pred --EEEeCCCCEEEEcCCCCHHHHHHHHHHhcCCceecc-CCCCCCeEeeeccCCCCcccccCCCchhheEEEEEEEcCCC
Confidence 6999999999999999999999999998 765332 34457899999999999999999999999999999999999
Q ss_pred cEEEcCCCCCcchhhhhhc-CCCCeEEEEeEEEeeecCCceEEEEEEEeC-CHHHHHHHHHHH
Q 042782 242 ELLTCSEEQNSGLFHAVLG-GLGQFGIITRARISLEPAPKRVRWIRVLYS-DFSTFTRDQEYL 302 (527)
Q Consensus 242 ~v~~~~~~~~~dL~~~~~G-s~G~lGIIt~atl~l~p~p~~~~~~~~~f~-~~~~~~~~~~~l 302 (527)
++++ +...++||||+++| |+|+|||||+++|||+|.|+....+.+.|+ +.+++.+.+..+
T Consensus 180 ~i~~-~~~~~~DLf~a~rGg~~g~~GIVt~~~l~l~p~p~~~~~~~~~~~~~~~~a~~~l~~~ 241 (495)
T 3fw9_A 180 AILD-RQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKW 241 (495)
T ss_dssp CEEC-HHHHCHHHHHHHTTSCTTSSCEEEEEEEECEECCSSEEEEEEEEEECHHHHHHHHHHH
T ss_pred CEEE-cCCCChhhhhhhhcccCCCcEEEEEEEEEEEeCCCeEEEEEEeecCcHHHHHHHHHHH
Confidence 9997 34468999999998 889999999999999999998888777764 345555544433
No 15
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}
Probab=100.00 E-value=5.1e-32 Score=293.79 Aligned_cols=216 Identities=19% Similarity=0.221 Sum_probs=179.0
Q ss_pred CCCcEEcC-hhhHHHh------hhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCc--C
Q 042782 70 VYGQLSVD-PFDVQTA------SLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQ--T 140 (527)
Q Consensus 70 ~~~~v~~d-~~~~~~~------~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~--~ 140 (527)
+.+.|.+. +..+... ...|+......|.+|++|+|++||+++|++|++ +++||++||||||+.|.+. .
T Consensus 21 ~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~---~~~~v~vrggGh~~~g~~~~~~ 97 (518)
T 3vte_A 21 NPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKK---VGLQIRTRSGGHDAEGMSYISQ 97 (518)
T ss_dssp -CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHH---HTCEEEEESSCCCTTCTTTCCS
T ss_pred CCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHH---cCCcEEEECCCcCCCCCccCCC
Confidence 35556652 2334333 235887778999999999999999999999999 9999999999999998874 3
Q ss_pred CCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCC--CCCCCcCCCccccccccccCCccc
Q 042782 141 SNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHG--LAPKSWTDYLYLSVGGTLSNAGIS 218 (527)
Q Consensus 141 ~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~G--l~p~~~~~~~~~TVGG~ia~~g~G 218 (527)
.+|++|||++||+ +++|+++.+++||||++|.+|.+++.++| +..+ .+....++|||.++++|+|
T Consensus 98 ~~gvvIdl~~l~~------------i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~-~G~~~~vgvgG~~~gGg~G 164 (518)
T 3vte_A 98 VPFVVVDLRNMHS------------IKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFP-GGYCPTVGVGGHFSGGGYG 164 (518)
T ss_dssp SSEEEEECTTCCC------------EEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECC-CCSCTTCBHHHHHHTCCCC
T ss_pred CCeEEEECCCCce------------eEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceec-CCCCCCeeeeeeeCCCCCc
Confidence 5799999999999 68999999999999999999999999865 5322 2233467899999999999
Q ss_pred CCccccCCccCcEeEEEEEeCCCcEEEcCCCCCcchhhhhhcC-CCCeEEEEeEEEeeecCCceEEEEEEEeC-CHHHHH
Q 042782 219 GQAFHQGPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGG-LGQFGIITRARISLEPAPKRVRWIRVLYS-DFSTFT 296 (527)
Q Consensus 219 ~~s~~~G~~~d~V~~levV~~~G~v~~~~~~~~~dL~~~~~Gs-~G~lGIIt~atl~l~p~p~~~~~~~~~f~-~~~~~~ 296 (527)
..+.+||.++|+|++++||++||++++. ..+|+||||+++|| +|+|||||+++|||+|.|+....+.+.+. +.+++.
T Consensus 165 ~~s~~~G~~~D~V~~~evV~adG~iv~~-~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~ 243 (518)
T 3vte_A 165 ALMRNYGLAADNIIDAHLVNVDGKVLDR-KSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLV 243 (518)
T ss_dssp TTHHHHCCGGGGEEEEEEECTTCCEECH-HHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHHHH
T ss_pred cccCCCCchhheEEEEEEEccCCeEEEe-eccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHHHH
Confidence 9999999999999999999999999965 33689999999997 89999999999999999987776666654 445555
Q ss_pred HHHHHH
Q 042782 297 RDQEYL 302 (527)
Q Consensus 297 ~~~~~l 302 (527)
+.+..+
T Consensus 244 ~~l~~~ 249 (518)
T 3vte_A 244 KLFNKW 249 (518)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 16
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=99.98 E-value=1.6e-32 Score=291.95 Aligned_cols=207 Identities=21% Similarity=0.312 Sum_probs=185.0
Q ss_pred hhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcC-CCcEEEEcCCCCCCCCCCCCCCC
Q 042782 85 SLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQT-SNGVVIQMSGSRGRRLGSSTPAA 163 (527)
Q Consensus 85 ~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~-~~gvvIdl~~mn~~~~~~~~~~~ 163 (527)
.++|++.++..|.+|++|+|++||+++|++| +|++++|+|||+.+++.+ .+|++|||++||+
T Consensus 10 ~~~w~~~~~~~p~~v~~P~s~~ev~~~v~~a-------~~v~~~G~G~s~~~~~~~~~~g~vi~l~~l~~---------- 72 (422)
T 2vfr_A 10 VTNWAGNITYTAKELLRPHSLDALRALVADS-------ARVRVLGSGHSFNEIAEPGDGGVLLSLAGLPS---------- 72 (422)
T ss_dssp CBCSSSSCBCSCSSCBCCSSHHHHHHHHHHC-------SSEEECSSCCCCSSTTCCCTTCEEECSTTSCC----------
T ss_pred eecCCCCccCCCCEEEeCCCHHHHHHHHHhC-------CCEEEEECCCCCCCCccCCCCcEEEEhhhCCC----------
Confidence 5799998999999999999999999999997 489999999999998873 5899999999999
Q ss_pred cceEEeCCCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCCccccCCccCcEeEEEEEeCCCcE
Q 042782 164 LRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGEL 243 (527)
Q Consensus 164 ~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G~v 243 (527)
++++|+++.+|+|+||++|.+|.+++.++|+.++.+++...+||||++++|++|.. .+||.++|+|+++++|++||++
T Consensus 73 -i~~~d~~~~~v~v~aG~~l~~l~~~l~~~Gl~l~~~~~~~~~tvGG~i~~~~~G~~-~~~G~~~d~v~~~~vv~~~G~~ 150 (422)
T 2vfr_A 73 -VVDVDTAARTVRVGGGVRYAELARVVHARGLALPNMASLPHISVAGSVATGTHGSG-VGNGSLASVVREVELVTADGST 150 (422)
T ss_dssp -CEEEETTTTEEEEETTCBHHHHHHHHHHTTEECSCCCSSSCSBHHHHHHHTCCCCC-TTCCCGGGGEEEEEEECTTSCE
T ss_pred -cEEEcCCCCEEEEcCCCCHHHHHHHHHHcCCcccCCCCCCCeeHHHHHhcCCCCCC-cccCcHHHheEEEEEEeCCCCE
Confidence 67999999999999999999999999999998777778788999999999887755 7999999999999999999999
Q ss_pred EEcCCCCCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHH-HHHHHHHHcCCCCCCchhhhcc
Q 042782 244 LTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFT-RDQEYLISLHELPASQKFDYVE 318 (527)
Q Consensus 244 ~~~~~~~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~-~~~~~l~~~~~~~~p~~~e~ld 318 (527)
+++++.+|+ |++++||+|++||||+++||+.|.|+......+ |.+++++. ++...+... +..+|+++
T Consensus 151 ~~~~~~~~~--f~~~~g~~G~lGvit~~~l~l~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~e~~~ 218 (422)
T 2vfr_A 151 VVIARGDER--FGGAVTSLGALGVVTSLTLDLEPAYEMEQHVFT-ELPLAGLDPATFETVMAA-----AYSVSLFT 218 (422)
T ss_dssp EEEETTSTT--GGGTSSCTTTTCEEEEEEEECEECCEEEEEEEE-EECSTTCCHHHHHHHHTS-----SSEEEEEE
T ss_pred EEeCCCCCC--cceEEecCCCCEEEEEEEEEEEecCceEEEEEe-cCCHHHHHHHHHHHHHhc-----CCcEEEEe
Confidence 999987776 899999999999999999999999988766654 77999998 888877632 34677665
No 17
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Probab=99.97 E-value=2e-31 Score=288.67 Aligned_cols=205 Identities=20% Similarity=0.214 Sum_probs=175.0
Q ss_pred CCCcEEc-ChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcC-CCcEEEE
Q 042782 70 VYGQLSV-DPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQT-SNGVVIQ 147 (527)
Q Consensus 70 ~~~~v~~-d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~-~~gvvId 147 (527)
+++.+.+ ++..+....+.|+.++...|.+|++|+|++||+++|++|++ +++||++||||||+.|.+.+ .+|++||
T Consensus 8 ~~~~~~~p~~~~y~~~~~~~n~~~~~~P~~vv~P~s~~dV~~~v~~a~~---~~~~v~vrggGh~~~g~~~~~~~gvvId 84 (501)
T 3pop_A 8 VPPFTVGREDPRYIELSHSDNHRFVVEPEEFFLPATPDDVVASLQKAVT---EGRGVACRSGGHCGQDFVGTPRRDLVLD 84 (501)
T ss_dssp -CCEEEETTSTTHHHHTCCSCTTSCCCCSEEEECSSHHHHHHHHHHHHH---TTCCEEEESSCCCSSSTTTSSCCSEEEE
T ss_pred CCCceECCCCcchHHHHHHHhhccCCCCCEEEEeCCHHHHHHHHHHHHH---cCCeEEEEeCCccCCCccccCCCEEEEE
Confidence 4444555 44567777789998899999999999999999999999999 99999999999999988876 4799999
Q ss_pred cCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHH-hCCCCCCCcCCCccccccccccCCcccCCccccCC
Q 042782 148 MSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTL-EHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGP 226 (527)
Q Consensus 148 l~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~-~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~ 226 (527)
|++||+ +++|+++.+++|+||++|.+|.+++. ++|+..+.. ....++|||.++++|+|..+.+||.
T Consensus 85 l~~l~~------------i~vd~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~G-~~~~vgvgG~~~gGg~G~~~~~~G~ 151 (501)
T 3pop_A 85 LHNLHA------------IGPAADGAGVRVGSGATVDQVQKALFRRWNAALPLG-ACSAVGMGGLVAGGGYGPLSRQLGL 151 (501)
T ss_dssp CTTCCC------------EEECTTSSSEEEETTCBHHHHHHHHHHHHSBCCCCC-SBTTCBHHHHHHHCCCCTTHHHHCC
T ss_pred ecccCC------------eEEcCCCCEEEEECCcCHHHHHHHHHhhcCeEeCCC-CCCCceEeeccccCCCccccccccc
Confidence 999999 68999889999999999999999997 579974432 3346789999999999999999999
Q ss_pred ccCcEeEEEEEe--CCCc--EEEc---CCCCCcchhhhhhcC-CCCeEEEEeEEEee----------ecCC-ceEEEEEE
Q 042782 227 QITNVHELDVVT--GKGE--LLTC---SEEQNSGLFHAVLGG-LGQFGIITRARISL----------EPAP-KRVRWIRV 287 (527)
Q Consensus 227 ~~d~V~~levV~--~~G~--v~~~---~~~~~~dL~~~~~Gs-~G~lGIIt~atl~l----------~p~p-~~~~~~~~ 287 (527)
++|+|+++|||+ +||+ ++++ +..+|+||||+++|| +|+|||||+++||+ .|.+ ..+....+
T Consensus 152 ~~D~v~~~evV~~da~G~~~~v~~~~~~~~~~~DLf~a~rG~G~g~fGIVt~~~lk~~~~~~~~~~~~p~~~~~v~~~~~ 231 (501)
T 3pop_A 152 VVDHLHAVEVAVVDESRTVRLVTARADDTGDLGELFWAHTGGGGGNFGVVTAYEFRSPEHLATEPVGLPRAAGRLHVQKV 231 (501)
T ss_dssp GGGGEEEEEEEEECTTSCEEEEEEETTCCHHHHHHHHHTTTSCTTSSCEEEEEEECCCTTTCBTTTTBCBCCSEEEEEEE
T ss_pred HHHhEEEEEEEEecCCCCEEEEEeccCCCCCCccHHHHhhccCCCCcEEEEEEEEEeccccCCChhhcCCCCceEEEEEE
Confidence 999999999999 8999 6776 345789999999998 79999999999998 6654 34555556
Q ss_pred EeC
Q 042782 288 LYS 290 (527)
Q Consensus 288 ~f~ 290 (527)
.|+
T Consensus 232 ~~~ 234 (501)
T 3pop_A 232 VFP 234 (501)
T ss_dssp EEE
T ss_pred EEc
Confidence 664
No 18
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A*
Probab=99.97 E-value=1.7e-30 Score=283.41 Aligned_cols=198 Identities=20% Similarity=0.282 Sum_probs=170.9
Q ss_pred ChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcC-CCcEEEEcCCCCCCC
Q 042782 77 DPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQT-SNGVVIQMSGSRGRR 155 (527)
Q Consensus 77 d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~-~~gvvIdl~~mn~~~ 155 (527)
++..+....+.|+.++...|.+|++|+|++||+++|++|++ +++||++||||||+.|.+.. .+|++|||++||+
T Consensus 40 ~~~~Y~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~---~~~~v~v~ggGh~~~g~~~~~~~gvvIdl~~l~~-- 114 (530)
T 2y3s_A 40 GDIRYEDLRRGENLRFVGDPEEIHLVGSAAEIEQVLSRAVR---SGKRVAVRSGGHCYEDFVANSDVRVVMDMSRLSA-- 114 (530)
T ss_dssp TSTTHHHHTCCSCTTCCCCCSEEEECCSHHHHHHHHHHHHH---TTCCEEEESSCCCSSSTTTCTTCCEEEECTTCCC--
T ss_pred CCccHHHHHhHhhhhccCCCCEEEecCCHHHHHHHHHHHHH---cCCcEEEECCCCCCCCCcccCCCeEEEEcccCCC--
Confidence 44567777788988888999999999999999999999999 99999999999999987764 5799999999999
Q ss_pred CCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHh-CCCCCCCcCCCccccccccccCCcccCCccccCCccCcEeEE
Q 042782 156 LGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLE-HGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHEL 234 (527)
Q Consensus 156 ~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~-~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~l 234 (527)
+++|+++.+|+|+||++|.+|.+++.+ +|+..+. +....++|||.++++|+|..+.+||.++|+|+++
T Consensus 115 ----------i~~d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~-G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~ 183 (530)
T 2y3s_A 115 ----------VGFDEERGAFAVEAGATLGAVYKTLFRVWGVTLPG-GACPDVGAGGHILGGGYGPLSRMHGSIVDYLHAV 183 (530)
T ss_dssp ----------EEEETTTTEEEEETTCBHHHHHHHHHHHHSCCCCC-CSCTTCBHHHHHHTTCCCTTHHHHCCGGGGEEEE
T ss_pred ----------EEEcCCCCEEEEeCCCCHHHHHHHHHhhcCeEEeC-CCCCCCCcCCCcCCCCCCcccccccchhhheeeE
Confidence 699998899999999999999999985 8997443 3445678999999999999999999999999999
Q ss_pred EEEe--CCCcEE--EcCCC-CCcc--hhhhhhcC-CCCeEEEEeEEEee------------ecCCc-eEEEEEEEeC
Q 042782 235 DVVT--GKGELL--TCSEE-QNSG--LFHAVLGG-LGQFGIITRARISL------------EPAPK-RVRWIRVLYS 290 (527)
Q Consensus 235 evV~--~~G~v~--~~~~~-~~~d--L~~~~~Gs-~G~lGIIt~atl~l------------~p~p~-~~~~~~~~f~ 290 (527)
|||+ ++|+++ ++++. +|+| |||+++|| +|+|||||+++||+ +|.|+ ......+.|+
T Consensus 184 evV~~d~~G~i~~v~~~~~~~~~d~DLf~a~rG~g~g~fGIVt~~~l~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 260 (530)
T 2y3s_A 184 EVVVVDASGDARTVIATREPSDPNHDLWWAHTGGGGGNFGVVVRYWLRTAEADVPPEPGRLLPRPPAEVLLNTTVWP 260 (530)
T ss_dssp EEEEECTTSCEEEEEEESCTTCTTHHHHHHTTTSCTTSSCEEEEEEECCCCSSCCSCGGGSSCCCCSEEEEEEEEEE
T ss_pred EEEEecCCCcEEEEeccccccCCChHHHHHHhcCCCCCcEEEEEEEEEeecccCccccccccCCCCceEEEEEEEec
Confidence 9999 569984 44554 5555 99999986 69999999999999 99875 4555556663
No 19
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*
Probab=99.97 E-value=1.6e-30 Score=283.39 Aligned_cols=197 Identities=17% Similarity=0.195 Sum_probs=170.3
Q ss_pred hhhHHHhh-hccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcC-CCcEEEEcCCCCCCC
Q 042782 78 PFDVQTAS-LDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQT-SNGVVIQMSGSRGRR 155 (527)
Q Consensus 78 ~~~~~~~~-~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~-~~gvvIdl~~mn~~~ 155 (527)
+..+.... +.|+.++...|.+|++|+|++||+++|++|++ +++|+++||||||+.|.+.+ .+|++|||++||+
T Consensus 39 d~~Y~~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~---~~~~~~v~ggGh~~~g~~~~~~~gvvIdl~~m~~-- 113 (523)
T 2wdx_A 39 DPRYLNLKLRGANSRFNGEPDYIHLVGSTQQVADAVEETVR---TGKRVAVRSGGHCFEDFVDNPDVKVIIDMSLLTE-- 113 (523)
T ss_dssp STTHHHHHTCSSCTTCCCCCSEEEECSSHHHHHHHHHHHHH---HTCCEEEESSCCCSSSSSSSTTCCEEEECTTCCC--
T ss_pred CcchHHHHhhhhhhcccCCCCEEEEeCCHHHHHHHHHHHHH---cCCcEEEEcCCCCCCCCccCCCCeEEEEcccCCC--
Confidence 34566665 88888888999999999999999999999999 99999999999999998765 4799999999999
Q ss_pred CCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHH-hCCCCCCCcCCCccccccccccCCcccCCccccCCccCcEeEE
Q 042782 156 LGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTL-EHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHEL 234 (527)
Q Consensus 156 ~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~-~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~l 234 (527)
+++|+++.+|+|+||++|.+|.+++. ++|+..+. +....++|||.++++|+|..+.+||.++|+|+++
T Consensus 114 ----------i~~d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~-G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~ 182 (523)
T 2wdx_A 114 ----------IAYDPSMNAFLIEPGNTLSEVYEKLYLGWNVTIPG-GVCGGVGVGGHICGGGYGPLSRQFGSVVDYLYAV 182 (523)
T ss_dssp ----------EEEETTTTEEEECTTCBHHHHHHHHHHHHSCCCCC-CCCTTCBHHHHHHHTCCCTTHHHHCCGGGGEEEE
T ss_pred ----------EEEcCCCCEEEEcCCCCHHHHHHHHHHhcCeEEcc-CCCCCCeeCccccCCCCCcccccccChhheEEEE
Confidence 69999999999999999999999998 59997443 3445679999999999999999999999999999
Q ss_pred EEEeC--CCcEEEc--CCC-CCcc--hhhhhhc-CCCCeEEEEeEEEee-----------ecCCce-EEEEEEEeC
Q 042782 235 DVVTG--KGELLTC--SEE-QNSG--LFHAVLG-GLGQFGIITRARISL-----------EPAPKR-VRWIRVLYS 290 (527)
Q Consensus 235 evV~~--~G~v~~~--~~~-~~~d--L~~~~~G-s~G~lGIIt~atl~l-----------~p~p~~-~~~~~~~f~ 290 (527)
|||++ +|+++++ ++. +++| |||+++| |+|+|||||+++||+ +|.|+. .....+.|+
T Consensus 183 evV~~d~~G~v~~~~~~~~~~~~~~DLf~a~rGgg~g~~GIVt~~~l~l~~~~~~~~~~~~p~~~~~~~~~~~~~~ 258 (523)
T 2wdx_A 183 EVVVVNKQGKARVIVATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMRVPEDVGRNPERLLPKPPATLLTSTVTFD 258 (523)
T ss_dssp EEEEECTTSCEEEEEEESCTTCTTHHHHHHTTTSCSSSSSEEEEEEECCSSCCCSCGGGSSCCCCSEEEEEEEECC
T ss_pred EEEEecCCccEEEEecccccCCCChHHHHHhhccCCCCcEEEEEEEEEeecccCCCcccccCCCcccEEEEEEEec
Confidence 99994 5997544 543 4555 9999996 569999999999999 998863 556667775
No 20
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}
Probab=99.97 E-value=2.4e-30 Score=281.98 Aligned_cols=197 Identities=23% Similarity=0.253 Sum_probs=168.7
Q ss_pred ChhhHHHhh-hccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcC-CCcEEEEcCCCCCC
Q 042782 77 DPFDVQTAS-LDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQT-SNGVVIQMSGSRGR 154 (527)
Q Consensus 77 d~~~~~~~~-~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~-~~gvvIdl~~mn~~ 154 (527)
++..+.... +.|+.++...|.+|++|+|++||+++|++|++ +++|+++||||||+.|.+.+ .+|++|||++||+
T Consensus 36 ~d~~Y~~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~---~~~~~~vrggGh~~~g~~~~~~~gvvIdl~~l~~- 111 (521)
T 2ipi_A 36 VDRRYQDLVTRGFNGRFRGRPDVVYVVHTADQVVDAVNQAMA---AGQRIAVRSGGHCFEGFVDDPAVRAVIDMSQMRQ- 111 (521)
T ss_dssp SSTTHHHHHTCCSCTTCCCCCSEEEECSSHHHHHHHHHHHHH---HTCCEEEESSCCCTTCGGGCTTCCEEEECTTCCC-
T ss_pred CCcchHHHHhccccccccCCCCEEEEcCCHHHHHHHHHHHHH---cCCeEEEECCCcCCCCCcccCCCeEEEecccCCC-
Confidence 444566666 88988889999999999999999999999999 99999999999999987654 5799999999999
Q ss_pred CCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHH-hCCCCCCCcCCCccccccccccCCcccCCccccCCccCcEeE
Q 042782 155 RLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTL-EHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHE 233 (527)
Q Consensus 155 ~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~-~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~ 233 (527)
+++|+++.+|+||||++|.+|++++. ++|+..+.. ....++|||.++++|+|..+.+||.++|+|++
T Consensus 112 -----------i~~d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~G-~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~ 179 (521)
T 2ipi_A 112 -----------VFYDSGKRAFAVEPGATLGETYRALYLDWGVTIPAG-VCPQVGVGGHVLGGGYGPLSRRDGVVADHLYA 179 (521)
T ss_dssp -----------EEEETTTTEEEECTTSBHHHHHHHHHHHHSBCCCCC-SCTTCBHHHHTTTTCCCTTHHHHCCGGGGEEE
T ss_pred -----------eEEeCCCCEEEEeCCcCHHHHHHHHHHhcCceeCCC-CCCCcccCCcccCCCCCccccccccHhhcEEE
Confidence 69999889999999999999999997 799974432 23467999999999999999999999999999
Q ss_pred EEEEeCC--CcEEE--cCCC-CCc--chhhhhhcC-CCCeEEEEeEEEee-----------ecCCce-EEEEEEEe
Q 042782 234 LDVVTGK--GELLT--CSEE-QNS--GLFHAVLGG-LGQFGIITRARISL-----------EPAPKR-VRWIRVLY 289 (527)
Q Consensus 234 levV~~~--G~v~~--~~~~-~~~--dL~~~~~Gs-~G~lGIIt~atl~l-----------~p~p~~-~~~~~~~f 289 (527)
+|||++| |+++. +++. +++ ||||+++|| +|+|||||+++||+ +|.|+. .....+.|
T Consensus 180 ~evV~~d~~G~i~~~~~~~~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~~~~~~~~~~~~p~~~~~~~~~~~~~ 255 (521)
T 2ipi_A 180 VEVVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFRTPGATGTDPSQLLPKAPTSTLRHIVTW 255 (521)
T ss_dssp EEEEEECTTSCEEEEEEECCTTCTTHHHHHHTTTSCSSSSCEEEEEEECCSSCCSSCGGGSSCBCCSCEEEEEEEE
T ss_pred EEEEEecCCccEEEEecccccCCCCHHHHHHHhcCCCCceEEEEEEEEEeecccCCCcccccCCCCceEEEEEEEe
Confidence 9999976 99743 4543 455 599999985 69999999999999 998764 44445556
No 21
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=99.96 E-value=5.9e-31 Score=270.66 Aligned_cols=271 Identities=15% Similarity=0.114 Sum_probs=195.2
Q ss_pred CChHHHHccCCCCcEEcChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCc
Q 042782 60 MDPTELLRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQ 139 (527)
Q Consensus 60 ~~~~~l~~~~~~~~v~~d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~ 139 (527)
..+++|++++.+++|.+ +..+..|+++ .+.+.|.+|++|+|++||++++++|++ +++|++++|||||+.+++.
T Consensus 17 ~~~~~l~~~l~~~~v~~-~~~l~~~~t~---~~~~~p~~vv~P~s~eev~~~l~~a~~---~~~pv~~~GgGtnl~~~~~ 89 (326)
T 1hsk_A 17 DIYQALQQLIPNEKIKV-DEPLKRYTYT---KTGGNADFYITPTKNEEVQAVVKYAYQ---NEIPVTYLGNGSNIIIREG 89 (326)
T ss_dssp HHHHHHHHHSCGGGEEE-EEEGGGTCTT---SCCCEEEEEECCSSHHHHHHHHHHHHH---TTCCEEEESSCSSEEECTT
T ss_pred HHHHHHHHhcCccceec-CcchHHhccC---CcCCcceEEEEcCCHHHHHHHHHHHHH---cCCCEEEECCCCccccCCC
Confidence 44567888877778888 5567777654 267789999999999999999999999 9999999999999988776
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCC----CCCCcCCCccccccccccCC
Q 042782 140 TSNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGL----APKSWTDYLYLSVGGTLSNA 215 (527)
Q Consensus 140 ~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl----~p~~~~~~~~~TVGG~ia~~ 215 (527)
+.+|++|||++||+ +++|. .+++|+||++|.+|.+++.++|+ +.+..+ .||||++++|
T Consensus 90 ~~~gvvI~l~~m~~------------i~id~--~~v~v~aGv~~~~l~~~l~~~Gl~gLe~~~~~P----gtvGG~i~~n 151 (326)
T 1hsk_A 90 GIRGIVISLLSLDH------------IEVSD--DAIIAGSGAAIIDVSRVARDYALTGLEFACGIP----GSIGGAVYMN 151 (326)
T ss_dssp CEEEEEEECTTCCC------------EEEET--TEEEEETTSBHHHHHHHHHHTTEESCGGGTTCC----SBHHHHHHHT
T ss_pred CCCeEEEEeCCCCc------------eEEcC--CEEEEeCCCcHHHHHHHHHHCCCccccccCCCc----chhhHHHhcc
Confidence 55799999999999 58874 69999999999999999999998 433222 3899999966
Q ss_pred cccCCccccC-CccCcEeEEEEEeCCCcEEEcCCCCCcchhhhhhc----CCCCeEEEEeEEEeeecC-CceEEEEEEEe
Q 042782 216 GISGQAFHQG-PQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLG----GLGQFGIITRARISLEPA-PKRVRWIRVLY 289 (527)
Q Consensus 216 g~G~~s~~~G-~~~d~V~~levV~~~G~v~~~~~~~~~dL~~~~~G----s~G~lGIIt~atl~l~p~-p~~~~~~~~~f 289 (527)
++| || .++|+|.++++|+++|++++++.. +++++++. ++| ||||+++||+.|. |+.....+..|
T Consensus 152 agg-----yG~~~~d~v~~v~vv~~~G~i~~~~~~---~~~~gyr~~~l~s~g--gIIt~~~l~l~p~~p~~~~~~~~~~ 221 (326)
T 1hsk_A 152 AGA-----YGGEVKDCIDYALCVNEQGSLIKLTTK---ELELDYRNSIIQKEH--LVVLEAAFTLAPGKMTEIQAKMDDL 221 (326)
T ss_dssp CEE-----TTEEHHHHEEEEEEECTTSCEEEEETT---TTTCBTTBCHHHHTT--CEEEEEEEECEECCHHHHHHHHHHH
T ss_pred ccc-----CchhhhhhEEEEEEEeCCCCEEEEChH---HcCCCccccccCCCC--EEEEEEEEEEEcCCHHHHHHHHHHH
Confidence 533 88 999999999999999999999875 56666665 456 9999999999999 65433322222
Q ss_pred CCHHHHHHHHH-----HHHHcCCCCCCchhhhcccchhcchhhhhhccccccCCCCCcccccCCCCCceEEEEEEeecCC
Q 042782 290 SDFSTFTRDQE-----YLISLHELPASQKFDYVEGFVIVDEGLINNWRSSFFSPRNPVKITSLGTDGGVLYCLEITKNYD 364 (527)
Q Consensus 290 ~~~~~~~~~~~-----~l~~~~~~~~p~~~e~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~llle~~~~~~ 364 (527)
.++.++.+... .++++ + ..|.++++||...+... + +. ...++ +..+.++++ ++
T Consensus 222 ~~~~~a~~p~~~~s~gs~fk~-p-~~~~a~elid~~glkg~------~---~g------~a~v~-~~~a~~lvn----~~ 279 (326)
T 1hsk_A 222 TERRESKQPLEYPSCGSVFQR-P-PGHFAGKLIQDSNLQGH------R---IG------GVEVS-TKHAGFMVN----VD 279 (326)
T ss_dssp HHHHHHHSCTTSCEECCCBCC-C-TTSCHHHHHHHTTCTTC------E---ET------TEEEC-SSCTTCEEE----CS
T ss_pred HHHHHhcCCCCCCcEEEeeeC-C-CcchHHHHHHHhccCCE------E---eC------Ceeec-ccccEEEEE----CC
Confidence 22222211100 11111 1 23455566555433110 0 00 01233 234567888 46
Q ss_pred CCChhhHHHHHHHHHHHhhhcCC
Q 042782 365 ESTADTTDQEVESLLKKLNFIQS 387 (527)
Q Consensus 365 ~~~~~~~~~~~~~ll~~l~~~~g 387 (527)
+.+.+++.+.++.+.+.+....|
T Consensus 280 ga~~~~v~~~~~~v~~~v~~~~g 302 (326)
T 1hsk_A 280 NGTATDYENLIHYVQKTVKEKFG 302 (326)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHhhC
Confidence 66777888888888888765444
No 22
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*
Probab=99.96 E-value=2.4e-29 Score=276.25 Aligned_cols=201 Identities=17% Similarity=0.154 Sum_probs=171.1
Q ss_pred hhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCc-----CCCcEEEEc-CCCC
Q 042782 79 FDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQ-----TSNGVVIQM-SGSR 152 (527)
Q Consensus 79 ~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~-----~~~gvvIdl-~~mn 152 (527)
..+..+.++|+..+...|.+|++|+|++||+++|++|++ +++||+++|+|||+.+.+. +.+|++||| ++||
T Consensus 19 ~~y~~~~~~w~~~~~~~p~~vv~P~s~~ev~~~v~~a~~---~~~~v~~~G~G~s~~~~~l~~~~~~~~gvvIdl~~~l~ 95 (561)
T 2i0k_A 19 ALFQQAYQNWSKEIMLDATWVCSPKTPQDVVRLANWAHE---HDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMTHLN 95 (561)
T ss_dssp CCEEEEEECTTSSSEEEEEEEECCSSHHHHHHHHHHHHH---HTCEEEEECCCCCCCTTSSCTTCCCTTEEEEECTTTSC
T ss_pred HhHHHHHhhhhhccCCCCCEEEecCCHHHHHHHHHHHHH---CCCcEEEECCCCCcccccccCCCcCCCeEEEechhhCC
Confidence 345556789998899999999999999999999999999 9999999999999865332 236899999 8999
Q ss_pred CCCCCCCCCCCcceEEeC--CCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCC----------
Q 042782 153 GRRLGSSTPAALRPHVYE--KERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQ---------- 220 (527)
Q Consensus 153 ~~~~~~~~~~~~ii~id~--~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~---------- 220 (527)
+ +++|+ ++.+|+||||++|.+|.+++.++|+.++..++...+||||++++|++|..
T Consensus 96 ~------------i~vd~~~~~~~v~v~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~TvGG~i~~~~~G~~l~~gG~~~~s 163 (561)
T 2i0k_A 96 G------------ITVNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAPGVLSIGGALAVNAHGAALPAVGQTTLP 163 (561)
T ss_dssp C------------EEEECCSSSCEEEEETTSBHHHHHHHHHHTTEECSSCCSCTTCBHHHHHHTTCCCSCCCCTTCCCCT
T ss_pred c------------eEecCcCCccEEEEcCCCCHHHHHHHHHHcCCcccccCCCCCcccCCCcccCCcccccccCCccccc
Confidence 9 59998 77899999999999999999999998666666677999999998876665
Q ss_pred ccccCCccCcEeEEEEEeCCCc---EEEcCCCCCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHH
Q 042782 221 AFHQGPQITNVHELDVVTGKGE---LLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTR 297 (527)
Q Consensus 221 s~~~G~~~d~V~~levV~~~G~---v~~~~~~~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~ 297 (527)
+.+||.+.|+|+++|+|++||+ +++++++ ++||+++++| .|. ||||+++||+.|.|+........++ ++++++
T Consensus 164 ~~~~G~~~d~V~~~evV~~dG~~~~~~~~~~~-~~dl~~a~~g-~G~-giIt~~tl~l~p~~~~~~~~~~~~~-~~~~l~ 239 (561)
T 2i0k_A 164 GHTYGSLSNLVTELTAVVWNGTTYALETYQRN-DPRITPLLTN-LGR-CFLTSVTMQAGPNFRQRCQSYTDIP-WRELFA 239 (561)
T ss_dssp TCCSSCGGGGEEEEEEEEECSSSEEEEEEETT-SGGGHHHHSC-TTS-SCEEEEEEECEECCEEEEEEECCSC-HHHHTC
T ss_pred ccccccHhheEEEEEEEeCCCCEEEeeeccCC-CccHHHHHhc-CCC-EEEEEEEEEEEECCceEEEEEEccC-HHHHHH
Confidence 7789999999999999999999 8888774 7899888884 466 8999999999999987666654444 555544
Q ss_pred H
Q 042782 298 D 298 (527)
Q Consensus 298 ~ 298 (527)
.
T Consensus 240 ~ 240 (561)
T 2i0k_A 240 P 240 (561)
T ss_dssp C
T ss_pred H
Confidence 3
No 23
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP}
Probab=99.96 E-value=8.8e-29 Score=267.80 Aligned_cols=206 Identities=16% Similarity=0.156 Sum_probs=169.4
Q ss_pred HHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCC-----CCCcCCCcEEEEcC-CCCCC
Q 042782 81 VQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSIN-----GQAQTSNGVVIQMS-GSRGR 154 (527)
Q Consensus 81 ~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~-----g~~~~~~gvvIdl~-~mn~~ 154 (527)
+....++|+..+.+.|.+|++|+|++||+++|++|++ +++||+++|+|||+. ++....+||+|||+ +||+
T Consensus 15 y~~~~~nWs~~~~~~P~~vv~P~s~eEV~~~Vk~A~~---~~~pv~v~GgGhs~~~l~~~gG~~~~~GVvIdls~~Ln~- 90 (540)
T 3js8_A 15 YKQSFKNWAGDIKVDDVWTCAPRSADEVVKVANWAKD---NGYKVRARGMMHNWSPLTLAAGVSCPAVVLLDTTRYLTA- 90 (540)
T ss_dssp EEEEEECTTSCCEEEEEEEECCSSHHHHHHHHHHHHH---HTCEEEEECSCCCSSCSSCCTTCSSCSEEEEETTTTCCC-
T ss_pred hcceeeccccccCCCccEEEEcCCHHHHHHHHHHHHH---cCCeEEEEeCCCCcccccccCCCCCCCeEEEECcCcCCC-
Confidence 3445689999899999999999999999999999999 999999999999996 43323578999995 6999
Q ss_pred CCCCCCCCCcceEEeCC--CcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCC----------cc
Q 042782 155 RLGSSTPAALRPHVYEK--ERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQ----------AF 222 (527)
Q Consensus 155 ~~~~~~~~~~ii~id~~--~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~----------s~ 222 (527)
+++|++ ..+|+|+||+++.+|.+++.++|+..+..++...+||||++++|++|.. +.
T Consensus 91 -----------I~vD~~~~~~tVtV~AGv~l~~L~~~L~~~GL~l~~~~gi~~~TVGGaia~gagG~~~~~~G~~~~~g~ 159 (540)
T 3js8_A 91 -----------MSIDASGPVAKVTAQAGITMEALLTGLEKAGLGVTAAPAPGDLTLGGVLAINGHGTAIPAKGERRLAGA 159 (540)
T ss_dssp -----------EEEECSSSSEEEEEETTSBHHHHHHHHHHTTEECSCCCSCSCSBHHHHHHTTCCCCBCCCTTCCCCTTC
T ss_pred -----------EEECCCCCccEEEEccCCCHHHHHHHHHHcCCEEEecCCCCCeEEcccccCCCCccccccccccccccc
Confidence 589985 5899999999999999999999997554455566899999998876654 57
Q ss_pred ccCCccCcEeEEEEEeCCCc-----EEEcCCCCCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHH
Q 042782 223 HQGPQITNVHELDVVTGKGE-----LLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTR 297 (527)
Q Consensus 223 ~~G~~~d~V~~levV~~~G~-----v~~~~~~~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~ 297 (527)
+||.++|+|++++||++||+ ++++++ +++||+ ++++|.|+ ||||+++||++|.+........ .-+++++++
T Consensus 160 ~~G~~~D~V~~levV~adG~~~~~~i~~~s~-~~~DL~-a~r~G~G~-gIVTevtlrl~P~~~l~~~~~~-~~~~~e~l~ 235 (540)
T 3js8_A 160 SYGSISNLVLSLTAVVYDKASGAYALRKFAR-NDPQIA-PLLAHVGR-SLIVEATLQAAPNQRLRCQSWF-NIPYGEMFA 235 (540)
T ss_dssp CSSCGGGGEEEEEEEEEETTTTEEEEEEEET-TSGGGH-HHHTCTTS-SCEEEEEEEEEECCEEEEEEEC-CSCHHHHTC
T ss_pred ccccHHHhEEEEEEEcCCCCCceeeEEEeCC-CChhHH-HHHhcCCC-eEEEEEEEEEEECCceEEEEEe-cCCHHHHHh
Confidence 99999999999999999998 888886 689985 55555688 5999999999999976544221 136777664
Q ss_pred -------HHHHHHHc
Q 042782 298 -------DQEYLISL 305 (527)
Q Consensus 298 -------~~~~l~~~ 305 (527)
....+++.
T Consensus 236 ~~~~~~~~~~~~~~~ 250 (540)
T 3js8_A 236 AAGSGGRTFASYLDS 250 (540)
T ss_dssp CSSCCSSCHHHHHHH
T ss_pred hcccccccHHHHHhc
Confidence 45556554
No 24
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes}
Probab=99.94 E-value=4e-27 Score=241.17 Aligned_cols=192 Identities=16% Similarity=0.115 Sum_probs=158.1
Q ss_pred CChHHHHccCCCCcEEcChhhHHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCc
Q 042782 60 MDPTELLRLGVYGQLSVDPFDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQ 139 (527)
Q Consensus 60 ~~~~~l~~~~~~~~v~~d~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~ 139 (527)
..+++|++++...++.+| ..+..|++ | .+.+.|.++++|+|++||++++++|++ +++|+.++|+|||+.+.+.
T Consensus 23 ~~~~~L~~~lg~~~v~~~-~~l~~~tt-~--~igg~p~~vv~P~s~eev~~~v~~a~~---~~~pv~v~GgGsnl~~~~~ 95 (322)
T 3tx1_A 23 NAMNNLQTKFPHIAIKLN-EPLSKYTY-T--KTGGAADVFVMPKTIEEAQEVVAYCHQ---NKIPLTILGNGSNLIIKDG 95 (322)
T ss_dssp --CCCHHHHCTTSEEEEE-EEGGGGST-T--SCCCEEEEEEECSSHHHHHHHHHHHHH---TTCCEEEESCCTTEEECTT
T ss_pred HHHHHHHHhcCCcceEcC-cchHHhcc-C--CcCceeeEEEEeCCHHHHHHHHHHHHH---cCCcEEEECCccCCCcCCC
Confidence 556788888888889998 46777775 3 367899999999999999999999999 9999999999999987765
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccC
Q 042782 140 TSNGVVIQMSGSRGRRLGSSTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISG 219 (527)
Q Consensus 140 ~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~ 219 (527)
+.+|++|||++||+ +.++. .+++|+||++|.+|.+++.++|+.+..+.+...+||||++++|+++
T Consensus 96 ~~~gvvI~l~~~~~------------I~~d~--~~v~v~aG~~~~~l~~~l~~~Gl~Gle~~~giPgTVGGav~~NaGg- 160 (322)
T 3tx1_A 96 GIRGVILHLDLLQT------------IERNN--TQIVAMSGAKLIDTAKFALNESLSGLEFACGIPGSIGGALHMNAGA- 160 (322)
T ss_dssp CEEEEEEECTTCCC------------EEEET--TEEEEETTSBHHHHHHHHHHTTEESCGGGTTCCSBHHHHHHHTCEE-
T ss_pred CCCeEEEECCCCCc------------EEECC--CEEEEecCcCHHHHHHHHHHcCCcccccCCCCcchhHHHHHhCccC-
Confidence 55799999999999 55664 5999999999999999999999953333333346999999955423
Q ss_pred Ccccc-CCccCcEeEEEEEeCCCcEEEcCCCCCcchhhhhhcCC-C-CeEEEEeEEEeeecCCc
Q 042782 220 QAFHQ-GPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGL-G-QFGIITRARISLEPAPK 280 (527)
Q Consensus 220 ~s~~~-G~~~d~V~~levV~~~G~v~~~~~~~~~dL~~~~~Gs~-G-~lGIIt~atl~l~p~p~ 280 (527)
| |.++|+|+++++|+++|+++++++ .|++|+++++. | ..||||+++|||.|.|+
T Consensus 161 ----yGg~~~d~v~~vevV~~~G~i~~~~~---~~~~~~yR~s~~g~~~~IIt~~tl~L~p~~~ 217 (322)
T 3tx1_A 161 ----YGGEISDVLEAATVLTQTGELKKLKR---SELKAAYRFSTIAEKNYIVLDATFSLALEEK 217 (322)
T ss_dssp ----TTEEHHHHEEEEEEECTTSCEEEEEG---GGCC--CC-CTTTGGGCEEEEEEEECEECCH
T ss_pred ----cccchHhhEEEEEEEcCCCCEEEech---HHcCcchhhcccCCCCEEEEEEEEEEEeCCH
Confidence 4 799999999999999999999976 48889998875 3 46899999999999984
No 25
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}
Probab=99.90 E-value=9.7e-24 Score=218.46 Aligned_cols=164 Identities=13% Similarity=0.087 Sum_probs=142.1
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeC-
Q 042782 92 SRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYE- 170 (527)
Q Consensus 92 ~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~- 170 (527)
+.+.|.++++|+|++||++++++|++ +++|+.++|+|||+.+.+. .+|+||+++ |++ +++++
T Consensus 27 igg~a~~vv~p~s~eel~~~v~~a~~---~~ipv~vlGgGSNll~~d~-~~GvVI~l~-~~~------------i~v~~~ 89 (357)
T 3i99_A 27 IEQLAAQLVVAESIDDLKALYCSAEW---ASLPKLIIGKGSNMLFTCH-YTGMIVVNR-LNG------------IEHQQD 89 (357)
T ss_dssp CSCEEEEEEEECSHHHHHHHHSSSTT---TTSCEEEESSCTTEEECSC-EEEEEEEEC-CCC------------EEEEEC
T ss_pred CCccceEEEEECCHHHHHHHHHHHHH---cCCCEEEECCCcCcccCCC-CCeEEEEcC-CCc------------eEEecc
Confidence 67899999999999999999999999 9999999999999987766 589999998 998 56653
Q ss_pred -CCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCCccccCC-ccCcEeEEEEEeC-CCcEEEcC
Q 042782 171 -KERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGP-QITNVHELDVVTG-KGELLTCS 247 (527)
Q Consensus 171 -~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~-~~d~V~~levV~~-~G~v~~~~ 247 (527)
++.+++|+||++|.+|.+++.++||.+....+....||||+++.|+ | .||. ++|+|+++++|++ +|++++++
T Consensus 90 ~~~~~v~v~AG~~~~~l~~~a~~~Gl~GlE~l~gIPGtVGGav~~Na-G----aYG~e~~d~v~~vevv~~~~G~i~~~~ 164 (357)
T 3i99_A 90 DDYHRLHVAGGEDWPSLVSWCVEQGIGGLENLALIPGCAGSAPIQNI-G----AYGVEFKDVCDYVEYLCLETGTVKRLT 164 (357)
T ss_dssp SSEEEEEEETTSBHHHHHHHHHHTTCTTCGGGTTCCSBGGGTTTTTC-E----ETTEEGGGTEEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEeCCCcHHHHHHHHHHcCCcCccccCCCCchhHHHHHhch-h----hhhhhHHhhEeEEEEEECCCCcEEEEe
Confidence 4568999999999999999999999755444444569999999553 2 5886 9999999999998 99999997
Q ss_pred CCCCcchhhhhhcCC-----CCeEEEEeEEEeeecCCc
Q 042782 248 EEQNSGLFHAVLGGL-----GQFGIITRARISLEPAPK 280 (527)
Q Consensus 248 ~~~~~dL~~~~~Gs~-----G~lGIIt~atl~l~p~p~ 280 (527)
+ .|++|++|+|. |++||||+++|||.|.++
T Consensus 165 ~---~dl~f~YR~s~~~~~~g~~gIIt~v~f~L~p~~~ 199 (357)
T 3i99_A 165 M---EECQFGYRDSIFKHQLYQKAVVTAVGLKFAKAWQ 199 (357)
T ss_dssp T---GGGCCBTTBCGGGTTTTTTEEEEEEEEEEESSCC
T ss_pred H---HHcCcccccccCCCccCCCEEEEEEEEEEEeCCc
Confidence 6 48999998864 479999999999999874
No 26
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A*
Probab=99.90 E-value=5.8e-23 Score=211.86 Aligned_cols=166 Identities=15% Similarity=0.121 Sum_probs=141.7
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCC
Q 042782 92 SRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEK 171 (527)
Q Consensus 92 ~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~ 171 (527)
+.+.|.++++|+|++||++++++|++ +++|+.++|+|||+.+.+. .+|+||+|+ |++ +..++.+
T Consensus 11 igg~a~~~v~p~s~eel~~~l~~a~~---~~~pv~vlGgGSnll~~d~-~~GvVI~l~-~~~-----------i~~i~~~ 74 (340)
T 1uxy_A 11 IDHNAQHIVCAEDEQQLLNAWQYATA---EGQPVLILGEGSNVLFLED-YRGTVIINR-IKG-----------IEIHDEP 74 (340)
T ss_dssp CCCBEEEEEEESSHHHHHHHHHHHHH---TTCCEEEESSCTTEEECSC-EEEEEEEEC-CCC-----------EEEEECS
T ss_pred CCccccEEEEeCCHHHHHHHHHHHHH---cCCCEEEECCCcCCcccCC-CCeEEEEcc-CCC-----------cEEEecC
Confidence 56789999999999999999999999 9999999999999987664 589999996 998 4556666
Q ss_pred C-cEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCCccccC-CccCcEeEEEEEeC-CCcEEEcCC
Q 042782 172 E-RYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQG-PQITNVHELDVVTG-KGELLTCSE 248 (527)
Q Consensus 172 ~-~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G-~~~d~V~~levV~~-~G~v~~~~~ 248 (527)
+ .+++|+||++|.+|.+++.++||.+....+....||||++..|+ | .|| .++|+|.++++|++ +|++++++.
T Consensus 75 ~~~~v~vgAG~~~~~l~~~~~~~Gl~Gle~~~gIPGtVGGa~~~Na-G----ayG~ei~d~v~~v~vv~~~~G~v~~~~~ 149 (340)
T 1uxy_A 75 DAWYLHVGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNI-G----AYGVELQRVCAYVDSVELATGKQVRLTA 149 (340)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHTTCCSCGGGTTCCSBGGGTTTTTC-E----ETTEEGGGTEEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEecCCCHHHHHHHHHHCCCCccccccCCccchhHHHHhcc-c----cchhhHHhheeEEEEEECCCCcEEEEeH
Confidence 6 68999999999999999999999755444444469999999553 2 277 59999999999997 999999976
Q ss_pred CCCcchhhhhhcCC-----CCeEEEEeEEEeeecCCce
Q 042782 249 EQNSGLFHAVLGGL-----GQFGIITRARISLEPAPKR 281 (527)
Q Consensus 249 ~~~~dL~~~~~Gs~-----G~lGIIt~atl~l~p~p~~ 281 (527)
.|+++++++|. |++||||+++|+|.|.|..
T Consensus 150 ---~d~~~gYR~s~~~~~~~~~gIVt~v~~~L~~~~~~ 184 (340)
T 1uxy_A 150 ---KECRFGYRDSIFKHEYQDRFAIVAVGLRLPKEWQP 184 (340)
T ss_dssp ---GGGTCBTTBCGGGTTTTTTEEEEEEEEEEESSCCC
T ss_pred ---HHhccccCcCccCCcCCCCEEEEEEEEEEEcCCCc
Confidence 48999999874 3699999999999998743
No 27
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A*
Probab=99.86 E-value=2.9e-22 Score=199.91 Aligned_cols=174 Identities=13% Similarity=0.086 Sum_probs=139.3
Q ss_pred HHHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCC-cEEEEcCCCCCCCCCCC
Q 042782 81 VQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSN-GVVIQMSGSRGRRLGSS 159 (527)
Q Consensus 81 ~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~-gvvIdl~~mn~~~~~~~ 159 (527)
+..|.+ | .+.++|. +++|+|++||++++ ++|+.++|+|||+.+.+.+.+ |+||++++|++
T Consensus 11 l~~~tt-~--~igg~a~-vv~p~s~edv~~~v---------~ipv~v~GgGsnll~~d~~~~~GvVI~l~~~~~------ 71 (268)
T 2gqt_A 11 LKDYTT-L--GVGGPAE-LWTVETREELKRAT---------EAPYRVLGNGSNLLVLDEGVPERVIRLAGEFQT------ 71 (268)
T ss_dssp GGGGSS-S--CCCCEEE-EEEECSHHHHHHHT---------TSCEEECSSSSSEEECTTCCSSEEEEECGGGGC------
T ss_pred hHHhcc-c--ccCcceE-EEEeCCHHHHHHHh---------CCCeEEcCCCcCceecCCCcCCeEEEEcCCCCC------
Confidence 445544 4 3567788 99999999999999 479999999999998877655 99999999998
Q ss_pred CCCCcceEEeCCCcEEEEeCCccHHHHHHHHHhCCCCCCCcCCCccccccccccCCcccCCccccC-CccCcEeEEEEEe
Q 042782 160 TPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQG-PQITNVHELDVVT 238 (527)
Q Consensus 160 ~~~~~ii~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G-~~~d~V~~levV~ 238 (527)
++++ + +|+||++|.+|.+++.++||++..+.+....||||++++|+ | .|| .++|+|+++++|
T Consensus 72 ------I~vd--~---~v~aG~~~~~l~~~~~~~Gl~Gle~~~giPGtvGGav~~Na-G----ayG~e~~d~v~~v~vv- 134 (268)
T 2gqt_A 72 ------YDLK--G---WVGAGTLLPLLVQEAARAGLSGLEGLLGIPAQVGGAVKMNA-G----TRFGEMADALEAVEVF- 134 (268)
T ss_dssp ------BCTT--S---EEETTSBHHHHHHHHHHTTEESCGGGTTCCCBHHHHHHTTC-E----ETTEEGGGGEEEEEEE-
T ss_pred ------cEEc--C---EEECCCCHHHHHHHHHHcCCcCCccccCccchhHHHHHhcc-c----cCchhHHhheeEEEEE-
Confidence 4444 2 99999999999999999999765555555569999999654 2 488 799999999999
Q ss_pred CCCcEEEcCCCCCcchhhhhhcCCCC-eEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHH
Q 042782 239 GKGELLTCSEEQNSGLFHAVLGGLGQ-FGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYL 302 (527)
Q Consensus 239 ~~G~v~~~~~~~~~dL~~~~~Gs~G~-lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l 302 (527)
++|+++++++ .|+++++|+|.-. -||||+++|||.|.+ |.++.+.++++.++
T Consensus 135 ~~G~v~~~~~---~~l~~~YR~s~~~~~gIVt~~~~~L~~~~---------~~~i~~~~~~v~~~ 187 (268)
T 2gqt_A 135 HDGAFHVYCP---EELGFGYRKSHLPPGGIVTRVRLKLKERP---------KEEILRRMAEVDRA 187 (268)
T ss_dssp ETTEEEEECG---GGSCCBTTBCCCSTTCEEEEEEECCEECC---------HHHHHHHHHHHHHH
T ss_pred CCCcEEEEch---HHcccccCCCCcCCCceEEEEEEEEEeCC---------HHHHHHHHHHHHHH
Confidence 9999999976 4899999998611 149999999999985 34555544444443
No 28
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus}
Probab=99.81 E-value=3.1e-20 Score=180.16 Aligned_cols=122 Identities=20% Similarity=0.229 Sum_probs=105.7
Q ss_pred eEEeCCCcEEEEeCCccHHHHHHHHHhCCCCCCC-cCCCccccccccccCCcccCCccccCCccCcEeEEEEEeCCCcEE
Q 042782 166 PHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKS-WTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELL 244 (527)
Q Consensus 166 i~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~p~~-~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~~levV~~~G~v~ 244 (527)
+++|+++.+|+|+||+++.+|.+++.++|++.+. +++... ||||++++|++| .+||.. |+|++++||++||+++
T Consensus 1 l~vd~~~~~v~V~aGv~l~~L~~~l~~~Gl~~~~~Pg~~~~-tVGG~v~~nagG---~~yG~~-D~V~~vevV~~dG~i~ 75 (219)
T 2yvs_A 1 MEVHAADQYLVAPGEADLLEVHARLAGTGLFPPFPPVELPG-GVGGLVARGGFA---QTFFFP-AEVLGLTFRTPKGRRV 75 (219)
T ss_dssp CEEETTTTEEEEETTCCHHHHHHHHTTTTEECSSCSEECTT-HHHHHHHTTCSS---BSSCGG-GGEEEEEEECTTSCEE
T ss_pred CeEcCCCCEEEEcCCCcHHHHHHHHHHcCCEEeccCCCCCC-chhheeccCccc---ccCCCc-cEEEEEEEEeCCCCEE
Confidence 3678888999999999999999999999997443 333444 999999988755 899999 9999999999999999
Q ss_pred EcCCC-----CCcchhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCH
Q 042782 245 TCSEE-----QNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDF 292 (527)
Q Consensus 245 ~~~~~-----~~~dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~ 292 (527)
+++.. .++|++++++||+|+|||||+++||++|.|+....+.+.|.++
T Consensus 76 ~~~~~~~kn~~gydl~~~~~Gs~G~lGIVt~~tlrl~p~~~~~~~~~~~~~~~ 128 (219)
T 2yvs_A 76 RAGGVVVKNVQGYDLVRLFVGSFGLLGRAEEVVLRLRPGRAQAFLRRPFSGSF 128 (219)
T ss_dssp EEECSSCSSSSCSCHHHHHTTCTTTTCEEEEEEEECEECSEEEEEEEECCSSC
T ss_pred EECCccccCCCCcchHHHhccCCCceEEEEEEEEEEEECCcccEEEEEecCCH
Confidence 99864 3589999999999999999999999999999887777766543
No 29
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C*
Probab=98.41 E-value=8.3e-07 Score=89.18 Aligned_cols=152 Identities=14% Similarity=0.109 Sum_probs=102.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCC---CcCCCcEEEEcCC---CCCCCCCCCCCCCcceEE
Q 042782 95 EPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQ---AQTSNGVVIQMSG---SRGRRLGSSTPAALRPHV 168 (527)
Q Consensus 95 ~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~---~~~~~gvvIdl~~---mn~~~~~~~~~~~~ii~i 168 (527)
.+..+++|+|.+|+.++++.. +.+..+.||||++.-. .....+++||+++ |+. ++.
T Consensus 4 ~~~~~~~P~s~~ea~~ll~~~------~~~~~ilaGGT~ll~~~~~~~~~~~~lIdl~~i~eL~~------------i~~ 65 (287)
T 1ffv_C 4 PRFEYHAPKSVGEAVALLGQL------GSDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRG------------IRE 65 (287)
T ss_dssp CCCEEECCSSHHHHHHHHHHH------GGGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCC------------EEE
T ss_pred CcceEECCCCHHHHHHHHHhc------CCCCEEEECchHHHHHHhcCCCCCCEEEECCCChhhcc------------eEe
Confidence 345689999999999999764 2468899999996532 1123689999985 565 565
Q ss_pred eCCCcEEEEeCCccHHHHHHH-HHhCCCC--------CCCcCCCccccccccccCCcccCCccccCCccCcEe-------
Q 042782 169 YEKERYVDVWGGELWIDVLRS-TLEHGLA--------PKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVH------- 232 (527)
Q Consensus 169 d~~~~~v~V~aGv~~~~l~~~-l~~~Gl~--------p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~------- 232 (527)
+. ..++++||+++.++.+. +.+.++. ..+++-.+..||||+|.++.. ..|.+.
T Consensus 66 ~~--~~l~iGA~~tl~~l~~~~~~~~~~~~L~~a~~~~a~~qiRN~gTvGGni~~~~~---------~~D~~~~l~Al~A 134 (287)
T 1ffv_C 66 EG--STVVIGAMTVENDLISSPIVQARLPLLAEAAKLIADPQVRNRGTIGGDIAHGDP---------GNDHPALSIAVEA 134 (287)
T ss_dssp ET--TEEEEETTCBHHHHHHCHHHHHHCHHHHHHGGGSSCTTGGGTCBHHHHHHTCCT---------TCSHHHHHHHTTC
T ss_pred cC--CEEEEccCCcHHHHhhChHHHHHhHHHHHHHHHhCCHHHhcceechhhhccCCC---------cHHHHHHHHHcCc
Confidence 44 47999999999999863 3333331 223322335799999998742 345444
Q ss_pred EEEEEeCCCcEEEcCCCCCcchhhhhhcC-CCCeEEEEeEEEeeecCC
Q 042782 233 ELDVVTGKGELLTCSEEQNSGLFHAVLGG-LGQFGIITRARISLEPAP 279 (527)
Q Consensus 233 ~levV~~~G~v~~~~~~~~~dL~~~~~Gs-~G~lGIIt~atl~l~p~p 279 (527)
.+++..++| ..+.... |+|..++-+ ...-.|||+++|.+.+..
T Consensus 135 ~v~~~~~~G-~r~i~~~---df~~g~~~t~l~~~eii~~i~ip~~~~~ 178 (287)
T 1ffv_C 135 HFVLEGPNG-RRTVPAD---GFFLGTYMTLLEENEVMVEIRVPAFAQG 178 (287)
T ss_dssp EEEEEETTE-EEEEEST---TTEEETTEESCCTTCEEEEEEEECCCTT
T ss_pred EEEEEcCCc-eEEEEHH---HHhcCcccccCCCCCEEEEEEecCCCCC
Confidence 688999999 4555432 666655432 122358999999877643
No 30
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C*
Probab=97.73 E-value=4.2e-05 Score=76.76 Aligned_cols=151 Identities=12% Similarity=0.099 Sum_probs=96.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCC---CcCCCcEEEEcCCC---CCCCCCCCCCCCcceEE
Q 042782 95 EPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQ---AQTSNGVVIQMSGS---RGRRLGSSTPAALRPHV 168 (527)
Q Consensus 95 ~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~---~~~~~gvvIdl~~m---n~~~~~~~~~~~~ii~i 168 (527)
.+..+++|+|.+|+.++++.. +-+..+.||||++.-. .....+++||++++ +. ++.
T Consensus 4 ~~~~~~~P~sl~ea~~ll~~~------~~~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~------------I~~ 65 (288)
T 1n62_C 4 GSFDYHRPKSIADAVALLTKL------GEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVG------------IRE 65 (288)
T ss_dssp CCCEEECCSSHHHHHHHHHHH------GGGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGSC------------EEE
T ss_pred CceEEECcCCHHHHHHHHHhc------CCCCEEEECchHHHHHHhcCCCCCCEEEECCCChhhcc------------eEe
Confidence 345688999999999998743 2347889999996431 11246899999874 55 555
Q ss_pred eCCCcEEEEeCCccHHHHHH--HHHhC--CCC-----CCCcCCCccccccccccCCcccCCccccCCccCcEe-------
Q 042782 169 YEKERYVDVWGGELWIDVLR--STLEH--GLA-----PKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVH------- 232 (527)
Q Consensus 169 d~~~~~v~V~aGv~~~~l~~--~l~~~--Gl~-----p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~------- 232 (527)
+. ..++++|++++.++.+ .+.++ +|. ..++.-.+..||||+|.++. +..|.+.
T Consensus 66 ~~--~~l~IGA~~t~~~l~~~~~~~~~~p~L~~a~~~ia~~qiRN~gTiGGnl~~a~---------p~sD~~~~L~Al~A 134 (288)
T 1n62_C 66 EG--TDVVIGAMTTQHALIGSDFLAAKLPIIRETSLLIADPQIRYMGTIGGNAANGD---------PGNDMPALMQCLGA 134 (288)
T ss_dssp ET--TEEEEETTCBHHHHHHCHHHHHHCHHHHHHHTTSSCHHHHHHCBHHHHHHSCC---------TTCSHHHHHHHHTC
T ss_pred cC--CEEEEccCCcHHHHhcChHHHHHHHHHHHHHHHhCCHHHHccccccchhccCC---------CchHHHHHHHHhCc
Confidence 43 4799999999999884 33321 111 22222223569999999873 3456544
Q ss_pred EEEEEeCCCcEEEcCCCCCcchhhhhhc-CCCCeEEEEeEEEeeecC
Q 042782 233 ELDVVTGKGELLTCSEEQNSGLFHAVLG-GLGQFGIITRARISLEPA 278 (527)
Q Consensus 233 ~levV~~~G~v~~~~~~~~~dL~~~~~G-s~G~lGIIt~atl~l~p~ 278 (527)
.+++..++|+ .+..-. |+|....- ....--|||+++|...+.
T Consensus 135 ~v~l~~~~G~-r~v~~~---df~~g~~~t~l~~~eil~~i~ip~~~~ 177 (288)
T 1n62_C 135 AYELTGPEGA-RIVAAR---DYYQGAYFTAIEPGELLTAIRIPVPPT 177 (288)
T ss_dssp EEEEEETTEE-EEEEHH---HHEEETTEESCCTTCEEEEEEEECCCT
T ss_pred EEEEEeCCcc-EEEEHH---HHhcCcccccCCCCCEEEEEEeCCCCC
Confidence 6778888884 333221 44443321 222336899998876553
No 31
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=97.63 E-value=4.6e-05 Score=81.30 Aligned_cols=149 Identities=11% Similarity=-0.004 Sum_probs=98.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCC---CcCCCcEEEEcCC---CCCCCCCCCCCCCcceEEeC
Q 042782 97 WAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQ---AQTSNGVVIQMSG---SRGRRLGSSTPAALRPHVYE 170 (527)
Q Consensus 97 ~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~---~~~~~gvvIdl~~---mn~~~~~~~~~~~~ii~id~ 170 (527)
..+++|+|.+|+.++++... +..+.||||++.-. .....+++||+++ |+. ++.+.
T Consensus 178 ~~y~~P~sl~ea~~ll~~~~-------~a~ilaGGT~L~~~~k~~~~~~~~lIdl~~i~eL~~------------I~~~~ 238 (462)
T 2w3s_A 178 APAFLPETSDALADWYLAHP-------EATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQ------------IRETP 238 (462)
T ss_dssp -CCBCCSSHHHHHHHHHHCT-------TCEEESSCTTTTHHHHTSCCCCCSEEECTTCGGGSC------------EEEET
T ss_pred cEEEecCCHHHHHHHHhhCC-------CCEEEeCCchhhhhhhccCCCCCEEEEcCCChhhCc------------EEEcC
Confidence 45788999999999987532 36788999997642 1224678999988 565 66553
Q ss_pred CCcEEEEeCCccHHHHHHHHHhCCCC--------CCCcCCCccccccccccCCcccCCccccCCccCcEe----EEEEEe
Q 042782 171 KERYVDVWGGELWIDVLRSTLEHGLA--------PKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVH----ELDVVT 238 (527)
Q Consensus 171 ~~~~v~V~aGv~~~~l~~~l~~~Gl~--------p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~----~levV~ 238 (527)
..++++||+++.++.+. .+.++. ..+++-.+..||||+|.++.. .+.+..-++ .+++..
T Consensus 239 --~~l~IGA~vtl~~l~~~-l~~~~p~L~~a~~~ia~~qIRN~gTvGGNl~~~sp------~sD~~~~L~ALdA~v~l~~ 309 (462)
T 2w3s_A 239 --DGYGIGAGVTIAALRAF-AEGPHPALAGLLRRFASEQVRQVATIGGNIANGSP------IGDGPPALIAMGASLTLRR 309 (462)
T ss_dssp --TEEEEETTCBHHHHHHH-HTTTCHHHHHHHTTSSCHHHHTTCBHHHHHHHTCT------TCSHHHHHHHTTCEEEEEB
T ss_pred --CEEEEccCCcHHHHHHH-HHHHhHHHHHHHHHhCChhheeeEEcccccccCCC------cchHHHHHHHcCCEEEEEe
Confidence 46999999999999877 333331 223332334799999998752 255555566 788888
Q ss_pred CCCcEEEcCCCCCcchhhhhhcC-CCCeEEEEeEEEeeec
Q 042782 239 GKGELLTCSEEQNSGLFHAVLGG-LGQFGIITRARISLEP 277 (527)
Q Consensus 239 ~~G~v~~~~~~~~~dL~~~~~Gs-~G~lGIIt~atl~l~p 277 (527)
++|+ .+..- .|+|..++-. ...--||++++|...+
T Consensus 310 ~~G~-R~vp~---~dF~~g~~~t~L~~~Eii~~i~iP~~~ 345 (462)
T 2w3s_A 310 GQER-RRMPL---EDFFLEYRKQDRRPGEFVESVTLPKSA 345 (462)
T ss_dssp TTBC-CCCBG---GGGEEETTEESCCTTCEEEEEEEESCC
T ss_pred CCce-EEEEH---HHhhcccccccCCCCcEEEEEEEecCC
Confidence 8883 33322 2555544321 1222599999887655
No 32
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B*
Probab=97.24 E-value=0.00038 Score=70.34 Aligned_cols=158 Identities=12% Similarity=0.004 Sum_probs=94.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCC---CcCCCcEEEEcCCCCCCCCCCCCCCCcceEEe
Q 042782 93 RAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQ---AQTSNGVVIQMSGSRGRRLGSSTPAALRPHVY 169 (527)
Q Consensus 93 ~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~---~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id 169 (527)
.+.+...++|+|.+|+.++++.. + ...+.+|||++... .....+.+||++++... ..|+.+
T Consensus 7 ~g~~~~y~~P~sl~ea~~ll~~~------~-~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL---------~~I~~~ 70 (305)
T 3nvz_B 7 EGERVTWIQASTLKELLDLKAQH------P-EAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPEL---------NAVEHG 70 (305)
T ss_dssp ECSSCEEEECCSHHHHHHHHHHC------T-TCEECSSCTTHHHHHHHSCCCCSEEEECTTCGGG---------GCEEEC
T ss_pred cCCCeEEEccCCHHHHHHHHHhC------C-CCEEEECccHHHHHHhcCCCCCCEEEECCCChhh---------cceEEC
Confidence 35567799999999999887542 1 24678999997522 11235789999975431 015543
Q ss_pred CCCcEEEEeCCccHHHHHHHHHhC-------------CC-----CCCCcCCCccccccccccCCcccCCccccCCccCcE
Q 042782 170 EKERYVDVWGGELWIDVLRSTLEH-------------GL-----APKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNV 231 (527)
Q Consensus 170 ~~~~~v~V~aGv~~~~l~~~l~~~-------------Gl-----~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V 231 (527)
+..++++|++++.++.+.+.++ .| ...++.-.+..||||+|+++... +.+.--+
T Consensus 71 --~~~l~IGA~vt~~~l~~~~~~~~~~~p~~~~~~~p~L~~a~~~ia~~qiRN~aTiGGNl~~a~p~------sD~~~~L 142 (305)
T 3nvz_B 71 --PEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASPI------SDLNPVF 142 (305)
T ss_dssp --SSEEEEETTCBHHHHHHHHHHHHHHSCGGGCHHHHHHHHHHTTSSCHHHHTTCBHHHHHHHCCTT------CSSHHHH
T ss_pred --CCeEEEccCCcHHHHHHHHHhhhcccchhhhhhhHHHHHHHHHhCCHHHhCeeechheeCCCCCc------hHHHHHH
Confidence 4589999999999998765421 11 12233233467999999987421 2222222
Q ss_pred e----EEEEEeCCCcEEEcCCCCCcchhhhhhc-CCCCeEEEEeEEEeeec
Q 042782 232 H----ELDVVTGKGELLTCSEEQNSGLFHAVLG-GLGQFGIITRARISLEP 277 (527)
Q Consensus 232 ~----~levV~~~G~v~~~~~~~~~dL~~~~~G-s~G~lGIIt~atl~l~p 277 (527)
+ .+++..++|+ .+..-. .|.|....- ....--|||++.|...+
T Consensus 143 ~AldA~v~l~~~~G~-R~vp~~--~df~~g~~~t~l~~~Eil~~I~iP~~~ 190 (305)
T 3nvz_B 143 MASGTKLTIVSRGTR-RTVPMD--HTFFPSYRKTLLGPEEILLSIEIPYSR 190 (305)
T ss_dssp HHHTCEEEEEETTEE-EEEECC--GGGCCSTTCCSCCTTCEEEEEEEECCC
T ss_pred HHcCCEEEEEcCCCc-EEEEee--hHhhcCcccccCCCCcEEEEEEecCCC
Confidence 2 5777888885 223221 133332211 11122489998875433
No 33
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3
Probab=96.71 E-value=0.00094 Score=66.85 Aligned_cols=151 Identities=11% Similarity=0.078 Sum_probs=92.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCC---CcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCC
Q 042782 95 EPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQ---AQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEK 171 (527)
Q Consensus 95 ~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~---~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~ 171 (527)
.|..+++|+|.+|+.++++. . .+ ..+.+|||++.-. .......+||++++... +.|+.+
T Consensus 4 ~~f~y~~P~sl~ea~~ll~~-~----~~--a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL---------~~I~~~-- 65 (288)
T 1t3q_C 4 PAFSYRAPASLQEVIQVLAD-D----PD--ARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSEL---------FEISQS-- 65 (288)
T ss_dssp CCCEEECCSSHHHHHHHHHH-C----TT--CEEESSCTTHHHHHHTTCCCCSEEEECTTCGGG---------GCEEEE--
T ss_pred CCceEECCCCHHHHHHHHhh-C----CC--CEEEeCchhHHHHHhcCCCCCCEEEECCCChhh---------cCeEEc--
Confidence 34568899999999999874 2 22 4678999995421 11235789999985420 015554
Q ss_pred CcEEEEeCCccHHHHHH--HHHhC-C-C-----CCCCcCCCccccccccccCCcccCCccccCCccCcEe-------EEE
Q 042782 172 ERYVDVWGGELWIDVLR--STLEH-G-L-----APKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVH-------ELD 235 (527)
Q Consensus 172 ~~~v~V~aGv~~~~l~~--~l~~~-G-l-----~p~~~~~~~~~TVGG~ia~~g~G~~s~~~G~~~d~V~-------~le 235 (527)
+..++++|++++.++.+ .+.++ . | ...++.-.+..|+||+|+++. +..|... .++
T Consensus 66 ~~~l~IGA~vt~~~l~~~~~~~~~~p~L~~a~~~ias~qiRN~aTiGGNi~~a~---------p~sD~~~~L~Al~A~v~ 136 (288)
T 1t3q_C 66 AGILSVGAMVTHFRNKTDPTVAKCVPILPKVLAHVAHQAVRNRGTLGGSLAHAD---------AGAEMPFLMATLGATMY 136 (288)
T ss_dssp TTEEEEETTCBHHHHHHCHHHHHHCTHHHHHHTTSSCHHHHTTCBHHHHHHHTC---------TTCHHHHHHHHTTCEEE
T ss_pred CCEEEEcCCCcHHHHhcCHHHHHHHHHHHHHHHHhCCHHHHcceechhhcccCC---------CcHHHHHHHHHcCcEEE
Confidence 35799999999999876 33321 1 1 122333345679999999773 2456555 677
Q ss_pred EEeCCCcEEEcCCCCCcchhhhhhc-CCCCeEEEEeEEEeee
Q 042782 236 VVTGKGELLTCSEEQNSGLFHAVLG-GLGQFGIITRARISLE 276 (527)
Q Consensus 236 vV~~~G~v~~~~~~~~~dL~~~~~G-s~G~lGIIt~atl~l~ 276 (527)
+..++|+ .+..-. |.|....- ....--|||++.|...
T Consensus 137 l~~~~g~-R~vp~~---dF~~g~~~t~L~~~Eil~~I~iP~~ 174 (288)
T 1t3q_C 137 IASSAGV-RSVSAT---DFMKGHYFTDLEAGEVLVRVEIPIP 174 (288)
T ss_dssp EEETTEE-EEEEHH---HHEEETTEESCCTTCEEEEEEEECC
T ss_pred EEcCCce-EEEEHH---HHhcCcccccCCCCCEEEEEEecCC
Confidence 8888885 333221 33332211 2223358999887544
No 34
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=96.70 E-value=0.0026 Score=63.87 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=67.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhcCcCCc-eEEEEcCCCCCCCC---CcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCC
Q 042782 96 PWAVLHPASADDITRVVKAAYESEAHGF-TISARGHGHSINGQ---AQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEK 171 (527)
Q Consensus 96 P~~Vv~P~s~~dV~~iv~~a~~~~~~~i-~v~~rG~G~s~~g~---~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~ 171 (527)
|...++|+|.+|..++++. ++- ...+.+|||++.-. .......+||++++...+ .|+. .
T Consensus 3 ~f~y~~P~sl~ea~~ll~~------~~~~~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~---------~I~~--~ 65 (296)
T 3hrd_C 3 DFEFFAPKTLEEAKGLLHQ------YKDVPPAIIAGGTDLVIEINDRWEKPDVVIDIKKLKELE---------YIRV--E 65 (296)
T ss_dssp CCEEECCSSHHHHHHHHHH------TTTSCCEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGC---------CEEE--C
T ss_pred ceeEeCCCCHHHHHHHHHh------CCCCCeEEEECCcHHHHHhhcCCCCCCeEEEcccChhhc---------ceEE--c
Confidence 4568899999999888754 332 35678999997421 112367899999864310 1444 3
Q ss_pred CcEEEEeCCccHHHHHHH--HHhC-C-C-----CCCCcCCCccccccccccCCc
Q 042782 172 ERYVDVWGGELWIDVLRS--TLEH-G-L-----APKSWTDYLYLSVGGTLSNAG 216 (527)
Q Consensus 172 ~~~v~V~aGv~~~~l~~~--l~~~-G-l-----~p~~~~~~~~~TVGG~ia~~g 216 (527)
+..++++|++++.++.+. +.++ . | ...++.-.+..|+||+|+|+.
T Consensus 66 ~~~l~IGA~vt~~~l~~~~~~~~~~p~L~~a~~~ias~qIRN~aTiGGNi~~a~ 119 (296)
T 3hrd_C 66 ENTIHIGALSTFTQIENHPFIRSHVRALYKAASQVGSPQIRNLGTIGGNLSTSS 119 (296)
T ss_dssp SSEEEEETTCBHHHHHHCHHHHHHCHHHHHHHHTSSCHHHHHHCBHHHHHHHTC
T ss_pred CCeEEEccCCcHHHHHhChhhhhHhHHHHHHHHHhCCHHHhcceehhhhhccCC
Confidence 468999999999998642 1111 0 1 122333335679999999764
No 35
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B*
Probab=93.35 E-value=0.02 Score=58.10 Aligned_cols=100 Identities=14% Similarity=0.182 Sum_probs=65.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCC---CCcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCCC
Q 042782 96 PWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSING---QAQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEKE 172 (527)
Q Consensus 96 P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g---~~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~ 172 (527)
|..+++|+|.+|..++++. . .-.+.+|||++.. ........+||++++...+ .|+.+++
T Consensus 6 ~f~y~~P~sl~ea~~ll~~------~--~a~~lAGGT~l~~~~k~~~~~p~~lIdi~~i~eL~---------~I~~~~~- 67 (324)
T 1rm6_B 6 DFRTHRPATLADAVNALAA------E--ATLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLA---------TISTLAD- 67 (324)
T ss_dssp CCEEECCSSHHHHHHHTTS------T--TEEEESSCTTHHHHHHTTSCCCSEEEECTTSTTTT---------CEEECTT-
T ss_pred ceEEEccCCHHHHHHHHhC------C--CCEEEECchhHHHHHhccCCCCCEEEECCCChhhc---------ceEECCC-
Confidence 4458899999999988762 2 2567899999742 1222357999998864310 2554432
Q ss_pred cEEEEeCCccHHHHHHH--HHhC-C-C-----CCCCcCCCcccccccccc
Q 042782 173 RYVDVWGGELWIDVLRS--TLEH-G-L-----APKSWTDYLYLSVGGTLS 213 (527)
Q Consensus 173 ~~v~V~aGv~~~~l~~~--l~~~-G-l-----~p~~~~~~~~~TVGG~ia 213 (527)
+.++++|++++.++.+. +.++ . | ...++.-.+..||||+|+
T Consensus 68 ~~l~IGA~vt~~~l~~~~~~~~~~p~L~~a~~~ias~qIRN~aTiGGNl~ 117 (324)
T 1rm6_B 68 GSLRIGAGATLEAIAEHDAIRTTWPALAQAAESVAGPTHRAAATLGGNLC 117 (324)
T ss_dssp SCEEEETTCBHHHHHHCHHHHHHSHHHHHHHHHSSCHHHHHHCBHHHHHT
T ss_pred CeEEEccCCcHHHHHhChHHHHHHHHHHHHHHHhCCHHHcceeEeeeecc
Confidence 36999999999998763 1111 1 1 133344445679999996
No 36
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=93.16 E-value=0.091 Score=62.80 Aligned_cols=105 Identities=11% Similarity=-0.031 Sum_probs=68.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCC---cCCCcEEEEcCCCCCCCCCCCCCCCcceEEeC
Q 042782 94 AEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQA---QTSNGVVIQMSGSRGRRLGSSTPAALRPHVYE 170 (527)
Q Consensus 94 ~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~---~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~ 170 (527)
+.+...++|.|.+|+.++++...+ -.+.+|||++.-.- ......+||++++... +.|+.+
T Consensus 231 ~~~~~~~~P~sl~ea~~ll~~~~~-------a~lvaGgT~l~~~~k~~~~~~~~lIdl~~i~EL---------~~I~~~- 293 (1332)
T 3unc_A 231 GERVTWIQASTLKELLDLKAQHPE-------AKLVVGNTEIGIEMKFKNQLFPMIICPAWIPEL---------NAVEHG- 293 (1332)
T ss_dssp CSSCEEEECCSHHHHHHHHHHCTT-------CEECSSCTTHHHHHHHSCCCCSEEEECTTCGGG---------GCEEEC-
T ss_pred CCceEEEccCCHHHHHHHHhhCCC-------CEEEEeCcHHHHHhhcCCCCCCeEEEcCCCHHh---------CceEEe-
Confidence 455679999999999988764221 35779999964211 1135689999985431 015544
Q ss_pred CCcEEEEeCCccHHHHHHHHHhC-------------CC-----CCCCcCCCccccccccccCCc
Q 042782 171 KERYVDVWGGELWIDVLRSTLEH-------------GL-----APKSWTDYLYLSVGGTLSNAG 216 (527)
Q Consensus 171 ~~~~v~V~aGv~~~~l~~~l~~~-------------Gl-----~p~~~~~~~~~TVGG~ia~~g 216 (527)
+..++++|++++.++.+.+.++ .| ...++.-.+..||||+|+++.
T Consensus 294 -~~~l~IGA~vtl~~l~~~l~~~~~~~~~~~~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~as 356 (1332)
T 3unc_A 294 -PEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITAS 356 (1332)
T ss_dssp -SSEEEEETTCBHHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHTSSCHHHHHHCBHHHHHHHCC
T ss_pred -CCEEEEEecChHHHHHHHHHHHhhhccccccchhHHHHHHHHHhCCHHHhceeeccceecccC
Confidence 4579999999999998765321 01 122333334579999999874
No 37
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=72.52 E-value=1.5 Score=52.61 Aligned_cols=102 Identities=10% Similarity=-0.045 Sum_probs=62.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCC---CCcCCCcEEEEcCCCCCCCCCCCCCCCcceEEeCCCc
Q 042782 97 WAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSING---QAQTSNGVVIQMSGSRGRRLGSSTPAALRPHVYEKER 173 (527)
Q Consensus 97 ~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g---~~~~~~gvvIdl~~mn~~~~~~~~~~~~ii~id~~~~ 173 (527)
...++|.|.+|+.++...- -+-+ ...|+|.+.- .-...-.++|++.+... .-.+...+.
T Consensus 241 ~~w~~P~tl~el~~l~~~~-----p~a~--lvaGnT~~gl~~~~~~~~~~~~I~~~~v~E-----------L~~i~~~~~ 302 (1335)
T 3zyv_A 241 TTWIAPGTLNDLLELKMKH-----PSAP--LVIGNTYLGLHMKFTDVSYPIIISPARILE-----------LFVVTNTKQ 302 (1335)
T ss_dssp CEEEECSSHHHHHHHHHHC-----TTSC--BCSSCTTHHHHHC--CCCCSEEECCTTCGG-----------GSCEECCTT
T ss_pred ceEecCCCHHHHHHHHHHC-----CCCe--EEEecccceeeEeecCCCCCeEEEcCcchh-----------HheEEecCC
Confidence 3478999999999886532 2233 3457777431 11112458899876443 112344556
Q ss_pred EEEEeCCccHHHHHHHHHhC----C-----CC---------CCCcCCCccccccccccCCc
Q 042782 174 YVDVWGGELWIDVLRSTLEH----G-----LA---------PKSWTDYLYLSVGGTLSNAG 216 (527)
Q Consensus 174 ~v~V~aGv~~~~l~~~l~~~----G-----l~---------p~~~~~~~~~TVGG~ia~~g 216 (527)
.++++|++++.++.+.+.+. + .+ ..+..-.+..|+||+|+|+.
T Consensus 303 ~l~IGA~vtls~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~fAs~qIRN~aTigGNI~~as 363 (1335)
T 3zyv_A 303 GLTLGTGLSLTQVKNVLSDVVSRLPKEKTQIYCALLKQLKTLAGQQIRNVASLGGHIISRL 363 (1335)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTTSCTTTCTTHHHHHHHHTTSSCHHHHHHCBHHHHHHTCC
T ss_pred EEEEcccCcHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcchhhcCcccccCceeccC
Confidence 89999999999988776531 1 00 12223335579999999874
No 38
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=31.74 E-value=25 Score=29.37 Aligned_cols=39 Identities=8% Similarity=0.189 Sum_probs=32.1
Q ss_pred CcceecccCcccHHHHHHHHHHhhc--CccCCCceEEeeCCC
Q 042782 420 HPWLNLFIPKSRIADFDKGVFKGIL--GNKTGGPILIYPMNK 459 (527)
Q Consensus 420 ~~~~dv~VP~s~l~~~~~~v~~~l~--gh~g~G~ih~~p~~~ 459 (527)
+-.+.+.|+.+.+.+.++.+. +.. |+.|||-|.++|+.+
T Consensus 58 K~kieivV~d~~v~~vv~~I~-~~~~tg~~GdGkIfV~~v~~ 98 (112)
T 3mhy_A 58 KVKVEVAVSDDQYEQVVEAIQ-KAANTGRIGDGKIFVLDIAQ 98 (112)
T ss_dssp EEEEEEEECTTTHHHHHHHHH-HHHCCSSTTCCEEEEEECSE
T ss_pred eEEEEEEEchHHHHHHHHHHH-HHhcCCCCCCeEEEEEEhHh
Confidence 345789999999999999874 443 899999999999853
No 39
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=30.90 E-value=25 Score=29.62 Aligned_cols=38 Identities=13% Similarity=0.364 Sum_probs=31.8
Q ss_pred cceecccCcccHHHHHHHHHHhhc--CccCCCceEEeeCCC
Q 042782 421 PWLNLFIPKSRIADFDKGVFKGIL--GNKTGGPILIYPMNK 459 (527)
Q Consensus 421 ~~~dv~VP~s~l~~~~~~v~~~l~--gh~g~G~ih~~p~~~ 459 (527)
..+.+.|+.+.+.+.++.+. +.. |+.|||-|.++|+.+
T Consensus 59 ~kieivV~d~~ve~vv~~I~-~~a~Tg~~GDGkIFV~~Ve~ 98 (116)
T 4aff_A 59 LKLEIVVEDAQVDTVIDKIV-AAARTGENGDGKIFVSPVDQ 98 (116)
T ss_dssp EEEEEEECGGGHHHHHHHHH-HHHCCSSTTCEEEEEEECSC
T ss_pred EEEEEEEcHHHHHHHHHHHH-HHhcCCCCCCeEEEEEEhHH
Confidence 45789999999999998874 443 899999999999864
No 40
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=29.49 E-value=22 Score=36.61 Aligned_cols=62 Identities=6% Similarity=-0.034 Sum_probs=39.6
Q ss_pred eecccCcccHHHHHHHHHHhhc--------------CccCCCceEE---ee--CCCcccc---cccccCCChhhHHHHHH
Q 042782 423 LNLFIPKSRIADFDKGVFKGIL--------------GNKTGGPILI---YP--MNKHKWD---NRSSVVTPDEDVFYLVA 480 (527)
Q Consensus 423 ~dv~VP~s~l~~~~~~v~~~l~--------------gh~g~G~ih~---~p--~~~~~~~---~~~~~~~p~~~v~~~v~ 480 (527)
.|++||+++++++++++. +++ +|+++|.+|+ .+ ..+-.+. +++..++ +++..+|.
T Consensus 293 ~e~avP~e~~~~~l~~l~-~~~~~~~~~~~~v~~r~~~~~~~~Ls~~~~r~~~~l~~~~~~~~~~~~~~~--~~~~~lv~ 369 (422)
T 2vfr_A 293 SEYLMPREHALAALHAMD-AIRETLAPVLQTCEIRTVAADAQWLSPAYGRDTVAAHFTWVEDTAAVLPVV--RRLEEALV 369 (422)
T ss_dssp EEEEEEGGGHHHHHHHHH-HTHHHHGGGEEEEEEEEECCBCSTTCTTBTSCEEEEEEEECSCHHHHHHHH--HHHHHHHG
T ss_pred EEEEEEHHHHHHHHHHHH-HHHHhCCCceeeEEEEeecCCccccCCCCCCCeEEEEEecCCCchhHHHHH--HHHHHHHH
Confidence 499999999999999874 422 6777776664 11 0000111 1122343 78888899
Q ss_pred HhCCCCC
Q 042782 481 FLRSALD 487 (527)
Q Consensus 481 ~l~~~~~ 487 (527)
.++|.+.
T Consensus 370 ~~gG~~~ 376 (422)
T 2vfr_A 370 PFAARPH 376 (422)
T ss_dssp GGTCEEC
T ss_pred HcCCccc
Confidence 9999865
No 41
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=28.73 E-value=30 Score=29.32 Aligned_cols=40 Identities=13% Similarity=0.343 Sum_probs=32.6
Q ss_pred CCcceecccCcccHHHHHHHHHHhhc--CccCCCceEEeeCCC
Q 042782 419 PHPWLNLFIPKSRIADFDKGVFKGIL--GNKTGGPILIYPMNK 459 (527)
Q Consensus 419 r~~~~dv~VP~s~l~~~~~~v~~~l~--gh~g~G~ih~~p~~~ 459 (527)
++..+.+.|+.+.+.+.++.+. +.. |+.|||-|.++|+.+
T Consensus 57 pK~~ieivV~de~ve~Vv~~I~-~~a~TG~~GDGkIFV~~Ve~ 98 (118)
T 3t9z_A 57 QKTKVEVVVSDDAVDEVVEAIV-SSARTGKFGDGRIFVIPVEK 98 (118)
T ss_dssp EEEEEEEEECGGGHHHHHHHHH-HHHCCSSTTCCEEEEEECCE
T ss_pred ceEEEEEEEChHHHHHHHHHHH-HHhcCCCCCCeEEEEEEhHH
Confidence 3446789999999999999884 443 899999999999853
No 42
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=28.59 E-value=66 Score=27.19 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=35.9
Q ss_pred HHhhhccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceE-EEEcCCC
Q 042782 82 QTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTI-SARGHGH 132 (527)
Q Consensus 82 ~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v-~~rG~G~ 132 (527)
..+...|. ..+.|..|++..+++|+.++.+.|.+ .++|. .++=+|+
T Consensus 43 ~~~~~~W~--~~g~~KiVlk~~~e~el~~l~~~a~~---~gl~~~~i~DAG~ 89 (120)
T 1xty_A 43 KEWLNEWL--HQGQPKIIVKVNSLDEIISRAKKAET---MNLPFSIIEDAGK 89 (120)
T ss_dssp HHHHHHHH--HTTCCEEEEEESSHHHHHHHHHHHHH---TTCCEEEEECCSS
T ss_pred HHHHHHHH--HCCCcEEEEecCCHHHHHHHHHHHHH---CCCCEEEEEcCCc
Confidence 44555563 46789999999999999999999999 99985 4455553
No 43
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=28.36 E-value=30 Score=29.36 Aligned_cols=38 Identities=16% Similarity=0.303 Sum_probs=31.7
Q ss_pred cceecccCcccHHHHHHHHHHhhc--CccCCCceEEeeCCC
Q 042782 421 PWLNLFIPKSRIADFDKGVFKGIL--GNKTGGPILIYPMNK 459 (527)
Q Consensus 421 ~~~dv~VP~s~l~~~~~~v~~~l~--gh~g~G~ih~~p~~~ 459 (527)
..+.+.|+.+.+.+.++.+. +.. |+.|||-|.++|+.+
T Consensus 59 ~kieivV~de~ve~vv~~I~-~~a~TG~~GDGkIFV~~Ve~ 98 (119)
T 3ncq_A 59 VKLEIVVKDDAVEEVIGLIV-NSAFTGSPGDGKIFIIPVED 98 (119)
T ss_dssp EEEEEEECGGGHHHHHHHHH-HHHCCSSTTCCEEEEEECSE
T ss_pred EEEEEEEcHHHHHHHHHHHH-HHhcCCCCCCCEEEEEEhHh
Confidence 45789999999999999884 443 899999999999853
No 44
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=28.35 E-value=25 Score=29.60 Aligned_cols=40 Identities=10% Similarity=0.283 Sum_probs=28.7
Q ss_pred CCcceecccCcccHHHHHHHHHHhhc--CccCCCceEEeeCCC
Q 042782 419 PHPWLNLFIPKSRIADFDKGVFKGIL--GNKTGGPILIYPMNK 459 (527)
Q Consensus 419 r~~~~dv~VP~s~l~~~~~~v~~~l~--gh~g~G~ih~~p~~~ 459 (527)
++..+.+.|+.+.+.+.++.+. +.. |+.|||-|.++|+.+
T Consensus 60 pk~kieivV~d~~ve~vv~~I~-~~a~tg~~GDGkIFV~~ve~ 101 (115)
T 3l7p_A 60 AKVKVEIVAHDAAVEEMITTIS-QAVKTGEVGDGKIFVSPVDE 101 (115)
T ss_dssp EEEEEEEEECGGGHHHHHHHHH-HHHCCC----CEEEEEECSE
T ss_pred ceEEEEEEEcHHHHHHHHHHHH-HHhcCCCCCCcEEEEEEhHh
Confidence 3345789999999999999874 444 889999999999853
No 45
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=27.52 E-value=96 Score=24.36 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=32.1
Q ss_pred chhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHH
Q 042782 253 GLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYL 302 (527)
Q Consensus 253 dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l 302 (527)
+|...|. .+|-|.++.+...+.-.......+.|.+.++|.+++..+
T Consensus 31 ~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 76 (105)
T 2dnh_A 31 DVLRLFQ----PFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHAL 76 (105)
T ss_dssp HHHHHHT----TTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----hcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHH
Confidence 4554443 456688887776665445678889999999988876644
No 46
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.33 E-value=1e+02 Score=23.92 Aligned_cols=46 Identities=17% Similarity=0.098 Sum_probs=31.8
Q ss_pred chhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHH
Q 042782 253 GLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYL 302 (527)
Q Consensus 253 dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l 302 (527)
||...|. .+|-|.++.+...+.-.......+.|.+.++|.+++..+
T Consensus 33 ~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 78 (100)
T 2do4_A 33 ELEEICK----AHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 78 (100)
T ss_dssp HHHHHHT----TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----hCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHh
Confidence 4555443 456688877766664445677889999999888776544
No 47
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=25.86 E-value=1e+02 Score=24.32 Aligned_cols=46 Identities=9% Similarity=0.183 Sum_probs=33.1
Q ss_pred chhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHH
Q 042782 253 GLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYL 302 (527)
Q Consensus 253 dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l 302 (527)
+|...|. .+|-|.++.+...+.........+.|.+.++|.+++..+
T Consensus 45 ~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 90 (107)
T 3ulh_A 45 DIQELFA----EFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 90 (107)
T ss_dssp HHHHHHH----TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----hcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 4555543 467788888877775455668889999999988876654
No 48
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=25.14 E-value=91 Score=23.93 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=32.5
Q ss_pred chhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHH
Q 042782 253 GLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYL 302 (527)
Q Consensus 253 dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l 302 (527)
+|...|. .+|-|.++.+...+.........+.|.+.+++.+++..+
T Consensus 32 ~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 77 (95)
T 2ywk_A 32 ILYELFL----QAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALL 77 (95)
T ss_dssp HHHHHHG----GGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHH
T ss_pred HHHHHHH----hcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 4555553 467788887776665555668889999999888776544
No 49
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=24.88 E-value=1.1e+02 Score=24.73 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=33.3
Q ss_pred chhhhhhcCCCCeEEEEeEEEeeecC-CceEEEEEEEeCCHHHHHHHHHHH
Q 042782 253 GLFHAVLGGLGQFGIITRARISLEPA-PKRVRWIRVLYSDFSTFTRDQEYL 302 (527)
Q Consensus 253 dL~~~~~Gs~G~lGIIt~atl~l~p~-p~~~~~~~~~f~~~~~~~~~~~~l 302 (527)
+|...| ..+|-|.++.+-..+. -.......+.|.+.++|.+++..+
T Consensus 22 ~L~~~F----~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~l 68 (110)
T 3s8s_A 22 FLKDMC----RKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNL 68 (110)
T ss_dssp HHHHHH----TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHH----HhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHh
Confidence 555555 4678899988877766 345567789999999888776544
No 50
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=24.62 E-value=85 Score=26.76 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=33.4
Q ss_pred hccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceE-EEEcCCC
Q 042782 86 LDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTI-SARGHGH 132 (527)
Q Consensus 86 ~d~~~~~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v-~~rG~G~ 132 (527)
..|. ..+.+..|++..|++|+.++.+.|.+ .++|. .++-+|.
T Consensus 41 ~~W~--~~G~~Kvvlk~~~e~el~~L~~~a~~---~gl~~~~I~DAG~ 83 (123)
T 1rzw_A 41 RKWL--DEGQKKVVLKVKSLEELLGIKHKAES---LGLVTGLVQDAGL 83 (123)
T ss_dssp HHTG--GGCSSEEEEECSCHHHHHHHHHHHHH---TTCCEEEECCTTC
T ss_pred HHHH--HCCCcEEEEecCCHHHHHHHHHHHHH---CCCCEEEEECCCC
Confidence 4553 35689999999999999999999999 99985 4455554
No 51
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=24.12 E-value=1.1e+02 Score=25.83 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=31.7
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceE-EEEcCCC
Q 042782 92 SRAEPWAVLHPASADDITRVVKAAYESEAHGFTI-SARGHGH 132 (527)
Q Consensus 92 ~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v-~~rG~G~ 132 (527)
..+.|..|++..+++++.++.+.|.+ .++|. .++-+|+
T Consensus 52 ~~g~~Kvvlk~~~e~el~~l~~~a~~---~gl~~~~i~DAG~ 90 (121)
T 1wn2_A 52 REGQKKVVVKVESEEELFKLKAEAEK---LGLPNALIRDAGL 90 (121)
T ss_dssp HTTCCEEEEEESSHHHHHHHHHHHHH---TTCCEEEEECTTC
T ss_pred HCCCcEEEEecCCHHHHHHHHHHHHH---CCCCEEEEEcCCc
Confidence 45789999999999999999999999 99986 3455554
No 52
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=23.53 E-value=94 Score=24.86 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=27.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHhcCcCCceEEEEcCCCCCCCCCcCCCcEEEEcCCCCC
Q 042782 97 WAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMSGSRG 153 (527)
Q Consensus 97 ~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v~~rG~G~s~~g~~~~~~gvvIdl~~mn~ 153 (527)
..+++|++-+|.+++....++ + .-|+|||+.|+.
T Consensus 7 Ivv~~P~sy~Da~~I~d~Lr~----~-------------------~~VvvNL~~ld~ 40 (87)
T 3p04_A 7 IVPVELHSFEDAQVIGGAFRD----G-------------------DAVVFDMSLLSR 40 (87)
T ss_dssp CEEEECSSGGGHHHHHHHHHT----T-------------------CCEEEECTTSCH
T ss_pred EEEEecCcHHHHHHHHHHHHC----C-------------------CEEEEECCCCCH
Confidence 468999999999999999885 2 346788887765
No 53
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.48 E-value=1.2e+02 Score=24.06 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=32.5
Q ss_pred chhhhhhcCCCCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHH
Q 042782 253 GLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYL 302 (527)
Q Consensus 253 dL~~~~~Gs~G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l 302 (527)
+|...| ..+|-|.++.+...+.-......++.|.+.+++.+++..+
T Consensus 31 ~l~~~f----~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 76 (114)
T 2do0_A 31 KLKEVF----SMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 76 (114)
T ss_dssp HHHHHH----TTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHH----HhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 455444 3456788877766665555678889999999988877654
No 54
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=23.24 E-value=1.1e+02 Score=24.72 Aligned_cols=40 Identities=10% Similarity=0.069 Sum_probs=30.4
Q ss_pred CCeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHH
Q 042782 263 GQFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYL 302 (527)
Q Consensus 263 G~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l 302 (527)
+.+|-|+++.+...+.........+.|.+.++|.+++..+
T Consensus 49 ~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~l 88 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDL 88 (104)
T ss_dssp HHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHH
Confidence 4678899988765444445778889999999998887655
No 55
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=22.96 E-value=1.1e+02 Score=25.49 Aligned_cols=47 Identities=26% Similarity=0.220 Sum_probs=33.4
Q ss_pred hhhhcCCCCeEEEEeEEEeeecC-----CceEEEEEEEeCCHHHHHHHHHHH
Q 042782 256 HAVLGGLGQFGIITRARISLEPA-----PKRVRWIRVLYSDFSTFTRDQEYL 302 (527)
Q Consensus 256 ~~~~Gs~G~lGIIt~atl~l~p~-----p~~~~~~~~~f~~~~~~~~~~~~l 302 (527)
.-++--.+.+|-|+++.+-..+. +.....+.+.|.+.++|.+++..+
T Consensus 40 edl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~L 91 (118)
T 3ue2_A 40 GEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 91 (118)
T ss_dssp HHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHH
Confidence 33333336788899988766543 234567889999999998887765
No 56
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=22.87 E-value=94 Score=26.06 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=31.2
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceE-EEEcCCC
Q 042782 92 SRAEPWAVLHPASADDITRVVKAAYESEAHGFTI-SARGHGH 132 (527)
Q Consensus 92 ~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v-~~rG~G~ 132 (527)
..+.|..|++..+++++.++.+.|.+ .++|. .++-+|+
T Consensus 48 ~~g~~kiVlk~~~e~~l~~l~~~a~~---~gl~~~~v~DAG~ 86 (117)
T 1rlk_A 48 DEGQRKIVVKVNDLDEIMEIKRMADS---MGIVNEIVQDRGY 86 (117)
T ss_dssp HTTCCEEEEEESSHHHHHHHHHHHHH---HTCCEEEEECCCS
T ss_pred HCCCeEEEEecCCHHHHHHHHHHHHH---CCCCEEEEEeCCc
Confidence 35789999999999999999999999 89886 3455543
No 57
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=22.79 E-value=91 Score=25.24 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=30.4
Q ss_pred CCeEEEEeEEEeeecC--CceEEEEEEEeCCHHHHHHHHHHH
Q 042782 263 GQFGIITRARISLEPA--PKRVRWIRVLYSDFSTFTRDQEYL 302 (527)
Q Consensus 263 G~lGIIt~atl~l~p~--p~~~~~~~~~f~~~~~~~~~~~~l 302 (527)
+.+|-|+++.+-..|. +.......+.|.+.++|.+++..+
T Consensus 35 ~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~l 76 (105)
T 2pe8_A 35 EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDL 76 (105)
T ss_dssp GGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHH
T ss_pred HhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHH
Confidence 5788899988765443 234577889999999998887765
No 58
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=21.53 E-value=95 Score=25.96 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=27.8
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhcCcCCceE
Q 042782 92 SRAEPWAVLHPASADDITRVVKAAYESEAHGFTI 125 (527)
Q Consensus 92 ~~~~P~~Vv~P~s~~dV~~iv~~a~~~~~~~i~v 125 (527)
..+.|..|++..+++|+.++.+.|.+ .++|.
T Consensus 46 ~~g~~kivlk~~~e~~l~~l~~~a~~---~gl~~ 76 (115)
T 2zv3_A 46 REGQKKVVVKVNSEKELIDIYNKARS---EGLPC 76 (115)
T ss_dssp HTTCCEEEEEESSHHHHHHHHHHHHH---HTCCE
T ss_pred HCCCeEEEEecCCHHHHHHHHHHHHH---cCCCE
Confidence 35789999999999999999999999 88875
No 59
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.43 E-value=1.7e+02 Score=22.82 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=27.6
Q ss_pred CeEEEEeEEEeeecCCceEEEEEEEeCCHHHHHHHHHHH
Q 042782 264 QFGIITRARISLEPAPKRVRWIRVLYSDFSTFTRDQEYL 302 (527)
Q Consensus 264 ~lGIIt~atl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l 302 (527)
.+|-|.++.+... ........++.|.+.++|.+++..+
T Consensus 38 ~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l 75 (103)
T 2d9p_A 38 PFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEM 75 (103)
T ss_dssp TTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred hcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHh
Confidence 5667888777655 3345667889999999988876654
Done!