BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042783
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/528 (72%), Positives = 425/528 (80%), Gaps = 24/528 (4%)
Query: 18 IFRSKLPDIYIPKHLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLN 77
IFRSKLPDIYIPK+LPLHSY EN+S +S+PCLING+ GDVYTY +VELTAR++ASGLN
Sbjct: 8 IFRSKLPDIYIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLN 67
Query: 78 KLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIIT 137
K+GI Q DVIML LP+ PEFV +FLGAS+RGAI TAANPF TPAE K AKAS AKL+IT
Sbjct: 68 KIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLIT 127
Query: 138 KASYVDKVKDL---EEVKIMCIDSPPDGCLHFSELTQADEKDLPHV-------------- 180
+A Y +KVKD +VK+MC+DS PDGCLHFSELTQADE + P V
Sbjct: 128 QACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYSS 187
Query: 181 -------GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLR 233
GVMLTHKGL+TSVAQQVDG+NPNLYF ED ILCVLP+FHIYALNSIMLCGLR
Sbjct: 188 GTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLR 247
Query: 234 AGAAILIMQKFEINSLLQLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAA 293
GA ILIM KFEI SLL LIE+YK KSP+ +K+DLSS+R++KSG A
Sbjct: 248 VGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGA 307
Query: 294 PLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMK 353
PLGKELED VR K P A LGQGYGMTEAGPVLAMCL+FAKEPF+IK GACGTVVRNAEMK
Sbjct: 308 PLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMK 367
Query: 354 IVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDEL 413
IVDPETGASLP N+PGEICIRGDQIM GYLNDPEAT TIDKEGWLHTGDIGYIDD+DEL
Sbjct: 368 IVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDEL 427
Query: 414 FIVDRLKELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQ 473
FIVDRLKELIKYKGFQVAP +H I+DAAVV +KD+ AGEVPVAFVVKS SQ
Sbjct: 428 FIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQ 487
Query: 474 ITEDEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAA 521
TEDEIKQ+ISKQV+FYKRI RVFFI+AIPKAPSGKILRK L+ KLA
Sbjct: 488 ATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/536 (69%), Positives = 417/536 (77%), Gaps = 32/536 (5%)
Query: 17 IIFRSKLPDIYIPKHLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGL 76
+IFRSKLPDIYIP HL LH Y F+NIS+ A++PCLING TG VYTY +V + +R+IA+
Sbjct: 46 VIFRSKLPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANF 105
Query: 77 NKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLII 136
+KLG+ Q DV+MLLLPN PEFV SFL AS+RGA ATAANPFFTPAE KQAKAS KLII
Sbjct: 106 HKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLII 165
Query: 137 TKASYVDKVKDLEE---VKIMCIDSP-----PDGCLHFSELTQA---------------- 172
T+A YVDK+K L+ V I+CID P+GCL F+ELTQ+
Sbjct: 166 TEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPD 225
Query: 173 DEKDLPHV--------GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYAL 224
D LP+ GVMLTHKGLVTSVAQQVDGENPNLYF +D ILCVLP+FHIYAL
Sbjct: 226 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYAL 285
Query: 225 NSIMLCGLRAGAAILIMQKFEINSLLQLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSS 284
NSIMLCGLR GAAILIM KFEIN LL+LI+R K KS ETEKYDLSS
Sbjct: 286 NSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSS 345
Query: 285 IRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACG 344
IR++KSGAAPLGKELEDAV K PNA LGQGYGMTEAGPVLAM L FAKEPF +K+GACG
Sbjct: 346 IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACG 405
Query: 345 TVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDI 404
TVVRNAEMKIVDP+TG SL N+PGEICIRG QIM GYLN+P AT TIDK+GWLHTGDI
Sbjct: 406 TVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDI 465
Query: 405 GYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVA 464
G IDD+DELFIVDRLKELIKYKGFQVAP H ITD AVV MK++AAGEVPVA
Sbjct: 466 GLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVA 525
Query: 465 FVVKSNDSQITEDEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLA 520
FVVKS DS+++ED++KQF+SKQVVFYKRIN+VFF ++IPKAPSGKILRK+LRAKLA
Sbjct: 526 FVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLA 581
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 237 bits (605), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 164/529 (31%), Positives = 256/529 (48%), Gaps = 62/529 (11%)
Query: 40 ENISKVASRPCLINGSTGDVYTYGEVELT-------ARKIASGLNKLGIGQRDVIMLLLP 92
E + K R L+ G+ + EV +T + ++A + + G+ I++
Sbjct: 24 EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 83
Query: 93 NVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLEE-- 150
N +F LGA + G AN + E S ++ + K+ ++++
Sbjct: 84 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 143
Query: 151 ---VKIMCIDSP-----------------PDGCLHFSELTQADEKD-------------- 176
KI+ +DS P G + + ++ ++D
Sbjct: 144 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTG 203
Query: 177 LPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIM---LCGLR 233
LP GV L H+ + D N + AIL V+P H + + + + +CG R
Sbjct: 204 LPK-GVALPHRTACVRFSHARDPIFGN-QIIPDTAILSVVPFHHGFGMFTTLGYLICGFR 261
Query: 234 AGAAILIMQKFEINSLLQLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAA 293
+++M +FE L+ ++ YK KS +KYDLS++ + SG A
Sbjct: 262 ----VVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGA 317
Query: 294 PLGKELEDAV--RIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAE 351
PL KE+ +AV R LP + QGYG+TE + + +P GA G VV E
Sbjct: 318 PLSKEVGEAVAKRFHLPG--IRQGYGLTETTSAILITPEGDDKP-----GAVGKVVPFFE 370
Query: 352 MKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDND 411
K+VD +TG +L N+ GE+C+RG IM+GY+N+PEAT + IDK+GWLH+GDI Y D+++
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 430
Query: 412 ELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSND 471
FIVDRLK LIKYKG+QVAP H +I DA V + DD AGE+P A VV +
Sbjct: 431 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 490
Query: 472 SQITEDEIKQFISKQVVFYKRI-NRVFFIDAIPKAPSGKILRKELRAKL 519
+TE EI +++ QV K++ V F+D +PK +GK+ +++R L
Sbjct: 491 KTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREIL 539
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 164/529 (31%), Positives = 256/529 (48%), Gaps = 62/529 (11%)
Query: 40 ENISKVASRPCLINGSTGDVYTYGEVELT-------ARKIASGLNKLGIGQRDVIMLLLP 92
E + K R L+ G+ + EV +T + ++A + + G+ I++
Sbjct: 24 EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 83
Query: 93 NVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLEE-- 150
N +F LGA + G AN + E S ++ + K+ ++++
Sbjct: 84 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 143
Query: 151 ---VKIMCIDSP-----------------PDGCLHFSELTQADEKD-------------- 176
KI+ +DS P G + + ++ ++D
Sbjct: 144 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTG 203
Query: 177 LPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIM---LCGLR 233
LP GV L H+ + D N + AIL V+P H + + + + +CG R
Sbjct: 204 LPK-GVALPHRTACVRFSHARDPIFGN-QIIPDTAILSVVPFHHGFGMFTTLGYLICGFR 261
Query: 234 AGAAILIMQKFEINSLLQLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAA 293
+++M +FE L+ ++ YK KS +KYDLS++ + SG A
Sbjct: 262 ----VVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGA 317
Query: 294 PLGKELEDAV--RIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAE 351
PL KE+ +AV R LP + QGYG+TE + + +P GA G VV E
Sbjct: 318 PLSKEVGEAVAKRFHLPG--IRQGYGLTETTSAILITPEGDDKP-----GAVGKVVPFFE 370
Query: 352 MKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDND 411
K+VD +TG +L N+ GE+C+RG IM+GY+N+PEAT + IDK+GWLH+GDI Y D+++
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 430
Query: 412 ELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSND 471
FIVDRLK LIKYKG+QVAP H +I DA V + DD AGE+P A VV +
Sbjct: 431 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 490
Query: 472 SQITEDEIKQFISKQVVFYKRI-NRVFFIDAIPKAPSGKILRKELRAKL 519
+TE EI +++ QV K++ V F+D +PK +GK+ +++R L
Sbjct: 491 KTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREIL 539
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 164/529 (31%), Positives = 256/529 (48%), Gaps = 62/529 (11%)
Query: 40 ENISKVASRPCLINGSTGDVYTYGEVELT-------ARKIASGLNKLGIGQRDVIMLLLP 92
E + K R L+ G+ + EV +T + ++A + + G+ I++
Sbjct: 29 EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 88
Query: 93 NVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLEE-- 150
N +F LGA + G AN + E S ++ + K+ ++++
Sbjct: 89 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 148
Query: 151 ---VKIMCIDSP-----------------PDGCLHFSELTQADEKD-------------- 176
KI+ +DS P G + + ++ ++D
Sbjct: 149 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTG 208
Query: 177 LPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIM---LCGLR 233
LP GV L H+ + D N + AIL V+P H + + + + +CG R
Sbjct: 209 LPK-GVALPHRTACVRFSHARDPIFGN-QIIPDTAILSVVPFHHGFGMFTTLGYLICGFR 266
Query: 234 AGAAILIMQKFEINSLLQLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAA 293
+++M +FE L+ ++ YK KS +KYDLS++ + SG A
Sbjct: 267 ----VVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGA 322
Query: 294 PLGKELEDAV--RIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAE 351
PL KE+ +AV R LP + QGYG+TE + + +P GA G VV E
Sbjct: 323 PLSKEVGEAVAKRFHLPG--IRQGYGLTETTSAILITPEGDDKP-----GAVGKVVPFFE 375
Query: 352 MKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDND 411
K+VD +TG +L N+ GE+C+RG IM+GY+N+PEAT + IDK+GWLH+GDI Y D+++
Sbjct: 376 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 435
Query: 412 ELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSND 471
FIVDRLK LIKYKG+QVAP H +I DA V + DD AGE+P A VV +
Sbjct: 436 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 495
Query: 472 SQITEDEIKQFISKQVVFYKRI-NRVFFIDAIPKAPSGKILRKELRAKL 519
+TE EI +++ QV K++ V F+D +PK +GK+ +++R L
Sbjct: 496 KTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREIL 544
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 231 bits (589), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 163/523 (31%), Positives = 253/523 (48%), Gaps = 56/523 (10%)
Query: 40 ENISKVASRPCLINGSTGDVYTYGEVELT-------ARKIASGLNKLGIGQRDVIMLLLP 92
E + K R L+ G+ + EV +T + ++A + + G+ I++
Sbjct: 29 EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSE 88
Query: 93 NVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLEE-- 150
N +F LGA + G AN + E S ++ + K+ ++++
Sbjct: 89 NSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 148
Query: 151 ---VKIMCIDSP-----------------PDGCLHFSELTQADEKD-------------- 176
KI+ +DS P G + + ++ ++D
Sbjct: 149 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTG 208
Query: 177 LPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGA 236
LP GV L H+ L + D N + AIL V+P H + + + L L +G
Sbjct: 209 LPK-GVALPHRALAVRFSHARDPIFGN-QIAPDTAILSVVPFHHGFGMFTT-LGYLISGF 265
Query: 237 AILIMQKFEINSLLQLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAAPLG 296
+++M +FE L+ ++ YK KS +KYDLS++ + SG APL
Sbjct: 266 RVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLS 325
Query: 297 KELEDAV--RIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKI 354
KE+ +AV R LP + QGYG+TE + + +P GA G VV E K+
Sbjct: 326 KEVGEAVAKRFHLPG--IRQGYGLTETTSAILITPKGDDKP-----GAVGKVVPFFEAKV 378
Query: 355 VDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELF 414
VD +TG +L N+ GE+ +RG IM+GY+N+PEAT + IDK+GWLH+GDI Y D+++ F
Sbjct: 379 VDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFF 438
Query: 415 IVDRLKELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQI 474
IVDRLK LIKYKG QVAP H +I DA V + DD AGE+P A VV + +
Sbjct: 439 IVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM 498
Query: 475 TEDEIKQFISKQVVFYKRI-NRVFFIDAIPKAPSGKILRKELR 516
TE EI +++ QV K++ V F+D +PK +GK+ +++R
Sbjct: 499 TEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 541
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 229 bits (585), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 164/512 (32%), Positives = 241/512 (47%), Gaps = 55/512 (10%)
Query: 50 CLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGA 109
N TG Y+Y E + + L G+ I L N EF + + G
Sbjct: 43 AFTNAVTGVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGV 102
Query: 110 IATAANPFFTPAETCKQAKASGAKLIITKASYVDKV----KDLEEVKIM----------- 154
N +T E S ++ + +DKV K + +K +
Sbjct: 103 GVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRG 162
Query: 155 --CIDS------PPDGCLHFSELTQADEKD-------------LPHVGVMLTHKGLVTSV 193
C+D+ PP + + D K+ LP GV LTH+ +VT
Sbjct: 163 YQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPK-GVQLTHENIVTRF 221
Query: 194 AQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIM---LCGLRAGAAILIMQKFEINSLL 250
+ D N + A+L V+P H + + + + +CG R ++++ KF+ + L
Sbjct: 222 SHARDPIYGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLICGFR----VVMLTKFDEETFL 276
Query: 251 QLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAAPLGKELEDAV--RIKLP 308
+ ++ YK KS KYDLS++ + SG APL KE+ +AV R LP
Sbjct: 277 KTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP 336
Query: 309 NAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKP 368
+ QGYG+TE + + +P GA G VV + K++D +T SL N+
Sbjct: 337 G--VRQGYGLTETTSAIIITPEGDDKP-----GASGKVVPLFKAKVIDLDTKKSLGPNRR 389
Query: 369 GEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGF 428
GE+C++G +M GY+N+PEATK ID+EGWLHTGDIGY D+ FIVDRLK LIKYKG+
Sbjct: 390 GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGY 449
Query: 429 QVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFISKQVV 488
QV P H SI DA V + D AGE+P A VV + +TE E+ +++ QV
Sbjct: 450 QVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVS 509
Query: 489 FYKRI-NRVFFIDAIPKAPSGKILRKELRAKL 519
KR+ V F+D +PK +GKI + +R L
Sbjct: 510 NAKRLRGGVRFVDEVPKGLTGKIDGRAIREIL 541
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 228 bits (582), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 164/512 (32%), Positives = 241/512 (47%), Gaps = 55/512 (10%)
Query: 50 CLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGA 109
N TG Y+Y E + + L G+ I L N EF + + G
Sbjct: 43 AFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGV 102
Query: 110 IATAANPFFTPAETCKQAKASGAKLIITKASYVDKV----KDLEEVKIM----------- 154
N +T E S ++ + +DKV K + +K +
Sbjct: 103 GVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRG 162
Query: 155 --CIDS------PPDGCLHFSELTQADEKD-------------LPHVGVMLTHKGLVTSV 193
C+D+ PP + + D K+ LP GV LTH+ +VT
Sbjct: 163 YQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPK-GVQLTHENIVTRF 221
Query: 194 AQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIM---LCGLRAGAAILIMQKFEINSLL 250
+ D N + A+L V+P H + + + + +CG R ++++ KF+ + L
Sbjct: 222 SHARDPIYGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLICGFR----VVMLTKFDEETFL 276
Query: 251 QLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAAPLGKELEDAV--RIKLP 308
+ ++ YK KS KYDLS++ + SG APL KE+ +AV R LP
Sbjct: 277 KTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP 336
Query: 309 NAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKP 368
+ QGYG+TE + + +P GA G VV + K++D +T SL N+
Sbjct: 337 G--VRQGYGLTETTSAIIITPEGDDKP-----GASGKVVPLFKAKVIDLDTKKSLGPNRR 389
Query: 369 GEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGF 428
GE+C++G +M GY+N+PEATK ID+EGWLHTGDIGY D+ FIVDRLK LIKYKG+
Sbjct: 390 GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGY 449
Query: 429 QVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFISKQVV 488
QV P H SI DA V + D AGE+P A VV + +TE E+ +++ QV
Sbjct: 450 QVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVS 509
Query: 489 FYKRI-NRVFFIDAIPKAPSGKILRKELRAKL 519
KR+ V F+D +PK +GKI + +R L
Sbjct: 510 NAKRLRGGVRFVDEVPKGLTGKIDGRAIREIL 541
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 228 bits (582), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 164/512 (32%), Positives = 241/512 (47%), Gaps = 55/512 (10%)
Query: 50 CLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGA 109
N TG Y+Y E + + L G+ I L N EF + + G
Sbjct: 43 AFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGV 102
Query: 110 IATAANPFFTPAETCKQAKASGAKLIITKASYVDKV----KDLEEVKIM----------- 154
N +T E S ++ + +DKV K + +K +
Sbjct: 103 GVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRG 162
Query: 155 --CIDS------PPDGCLHFSELTQADEKD-------------LPHVGVMLTHKGLVTSV 193
C+D+ PP + + D K+ LP GV LTH+ +VT
Sbjct: 163 YQCLDTFIKRNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPK-GVQLTHENIVTRF 221
Query: 194 AQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIM---LCGLRAGAAILIMQKFEINSLL 250
+ D N + A+L V+P H + + + + +CG R ++++ KF+ + L
Sbjct: 222 SHARDPIYGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLICGFR----VVMLTKFDEETFL 276
Query: 251 QLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAAPLGKELEDAV--RIKLP 308
+ ++ YK KS KYDLS++ + SG APL KE+ +AV R LP
Sbjct: 277 KTLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP 336
Query: 309 NAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKP 368
+ QGYG+TE + + +P GA G VV + K++D +T SL N+
Sbjct: 337 G--VRQGYGLTETTSAIIITPEGDDKP-----GASGKVVPLFKAKVIDLDTKKSLGPNRR 389
Query: 369 GEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGF 428
GE+C++G +M GY+N+PEATK ID+EGWLHTGDIGY D+ FIVDRLK LIKYKG+
Sbjct: 390 GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGY 449
Query: 429 QVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFISKQVV 488
QV P H SI DA V + D AGE+P A VV + +TE E+ +++ QV
Sbjct: 450 QVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVS 509
Query: 489 FYKRI-NRVFFIDAIPKAPSGKILRKELRAKL 519
KR+ V F+D +PK +GKI + +R L
Sbjct: 510 NAKRLRGGVRFVDEVPKGLTGKIDGRAIREIL 541
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 226 bits (575), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 166/529 (31%), Positives = 244/529 (46%), Gaps = 61/529 (11%)
Query: 40 ENISKVASRPCLINGSTGDVYTYGEVELT-------ARKIASGLNKLGIGQRDVIMLLLP 92
E + K R + G+ + EV +T A ++A + + G+G + I +
Sbjct: 58 EQLHKAMKRYAQVPGTIAFTDAHAEVNITYSEYFEMACRLAETMKRYGLGLQHHIAVCSE 117
Query: 93 NVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLEE-- 150
N +F GA + G N + E S ++ + K+ +++
Sbjct: 118 NSLQFFMPVCGALFIGVGVAPTNDIYNERELYNSLSISQPTIVFCSKRALQKILGVQKKL 177
Query: 151 ---VKIMCIDSPPD-----GCLHFSE--------------------------LTQADEKD 176
KI+ +DS D F E + +
Sbjct: 178 PIIQKIVILDSREDYMGKQSMYSFIESHLPAGFNEYDYIPDSFDRETATALIMNSSGSTG 237
Query: 177 LPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIM---LCGLR 233
LP GV LTHK + + D N + AIL V+P H + + + + CG R
Sbjct: 238 LPK-GVELTHKNICVRFSHCRDPVFGN-QIIPDTAILTVIPFHHGFGMFTTLGYLTCGFR 295
Query: 234 AGAAILIMQKFEINSLLQLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAA 293
I++M +FE L+ ++ YK KS +KYDLS++ + SG A
Sbjct: 296 ----IVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDKYDLSNLHEIASGGA 351
Query: 294 PLGKELEDAV--RIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAE 351
PL KE+ +AV R KLP + QGYG+TE + + + K GACG VV
Sbjct: 352 PLAKEVGEAVAKRFKLPG--IRQGYGLTETTSAIIITPRGRDD----KPGACGKVVPFFS 405
Query: 352 MKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDND 411
KIVD +TG +L N+ GE+C++G IM GY+N+PEAT + IDK+GWLH+GDI Y D +
Sbjct: 406 AKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDG 465
Query: 412 ELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSND 471
FIVDRLK LIKYKG+QV P H I DA V + D AGE+P A VV
Sbjct: 466 YFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVLEEG 525
Query: 472 SQITEDEIKQFISKQVVFYKRI-NRVFFIDAIPKAPSGKILRKELRAKL 519
+TE E+ +++ QV KR+ V F+D +PK +GKI +++R L
Sbjct: 526 KTMTEQEVMDYVAGQVTASKRLRGGVKFVDEVPKGLTGKIDARKIREIL 574
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 135/494 (27%), Positives = 219/494 (44%), Gaps = 46/494 (9%)
Query: 55 STGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAA 114
ST TY ++ A + A L LGI + D + LL+PN EF F GA+ GA+A
Sbjct: 39 STDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 98
Query: 115 NPFFTPAETCKQAKASGAKLII---TKASYVDKVKD-----------------LEEVKIM 154
N E SG+K++I A +D ++ E ++
Sbjct: 99 NTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSA 158
Query: 155 CIDSPPDGC-------LHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFT 207
D P C + ++ T K GV+ TH+ SV +
Sbjct: 159 AADEPAVECGGDDNLFIMYTSGTTGHPK-----GVVHTHE----SVHSAASSWASTIDVR 209
Query: 208 KEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEINSLLQLIERYKXXXXXXXXXX 267
D +L LP+FH+ AL +++ +R G ++ M +F+ + LI +
Sbjct: 210 YRDRLLLPLPMFHVAALTTVIFSAMR-GVTLISMPQFDATKVWSLIVEERVCIGGAVPAI 268
Query: 268 XXXXXKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAM 327
+ PE + D R +G AP+ + L K N + QGY +TE+ +
Sbjct: 269 LNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTL 326
Query: 328 CLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPE 387
LS E KAG+ G ++ + + + + GE+ I+ D ++ Y N PE
Sbjct: 327 LLS---EDALRKAGSAGRATMFTDVAVRGDD--GVIREHGEGEVVIKSDILLKEYWNRPE 381
Query: 388 ATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSITD 447
AT+ D GW TGDIG IDD L+I DRLK++I G V P +++
Sbjct: 382 ATRDAFDN-GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSE 440
Query: 448 AAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFISKQVVFYKRINRVFFIDAIPKAPS 507
AV+ + D+ GE+ A VV ++ ++++E +I ++ ++ YK +V F +AIP+ P+
Sbjct: 441 VAVIGLPDEKWGEIAAAIVV-ADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPT 499
Query: 508 GKILRKELRAKLAA 521
GKIL+ LR + +A
Sbjct: 500 GKILKTVLREQYSA 513
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 125/490 (25%), Positives = 214/490 (43%), Gaps = 48/490 (9%)
Query: 69 ARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAK 128
+K+ASG+++ G+ + + + + +PN ++V + A NP + E
Sbjct: 62 TKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILN 121
Query: 129 ASGAKLIITKASYVDKVKD-LEEVKIMCIDSPPDGCLHFSELTQADEKDLPHV------- 180
S A ++ + + K LE+ + + SE+ + +D +V
Sbjct: 122 DSEATTLVVHSXLYENFKPVLEKTGVERVFVVGGEVNSLSEVXDSGSEDFENVKVNPEED 181
Query: 181 ---------------GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALN 225
GV LTH L + Q + D I+ P FH
Sbjct: 182 VALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATG----LSHXDTIVGCXPXFHSAEFG 237
Query: 226 SIMLCGLRAGAAILIMQKFEINSLLQLIERYKXXXXXXXXXXXXXXXKSPET--EKYDLS 283
+ L + G ++ F L + IE+YK + E+ + YD S
Sbjct: 238 LVNLX-VTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWS 296
Query: 284 SIRILKSGAAPLGKELED------AVRIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFE 337
+++ +GA P+ L + A + P Q +G TEA P + P
Sbjct: 297 YLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVT-----TNPPLR 351
Query: 338 I-KAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKS--TID 394
+ K+ G + E+K++ E G L + GEI IRG I GY + + D
Sbjct: 352 LDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYD 411
Query: 395 KEG--WLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSITDAAVVP 452
++G + TGD+G+ID+ L DR+KE+IKYKG+ +AP H ++ D AV+
Sbjct: 412 EKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVIG 471
Query: 453 MKDDAAGEVPVAFVVKSND--SQITEDEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKI 510
D+ AGEVP AF+V + ++ E++I +++ +++ YKR+ V F++ +P+ SGK+
Sbjct: 472 KPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKL 531
Query: 511 LRKELRAKLA 520
LR+ LR K A
Sbjct: 532 LRRLLREKEA 541
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 123/504 (24%), Positives = 215/504 (42%), Gaps = 43/504 (8%)
Query: 56 TGDVY--TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATA 113
TG+V+ TY EV AR++ GL LG+G D + L N + ++ GA+
Sbjct: 42 TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHT 101
Query: 114 ANPFFTPAETCKQAKASGAKLIITKASYVDKVK----DLEEVKIMCI--DSPPDGCLHFS 167
ANP +P E + K+++ + + V+ +L+ V+ + + P+G L +
Sbjct: 102 ANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYE 161
Query: 168 EL--TQADEKDLPHV----------------GVMLTHKGLV--TSVAQQVDGENPNLYFT 207
E +AD +P GV+ +H+ LV + A VDG +
Sbjct: 162 EALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA----LS 217
Query: 208 KEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEINSLLQLIERYKXXXXXXXXXX 267
++D +L V+P+FH+ A L +L + + SL++L +
Sbjct: 218 EKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTV 277
Query: 268 XXXXXKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAM 327
E+ + L ++R L G + + L R + + QGYG+TE PV+
Sbjct: 278 WLALADYLESTGHRLKTLRRLVVGGSAAPRSL--IARFERMGVEVRQGYGLTETSPVVVQ 335
Query: 328 CL------SFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKP--GEICIRGDQIM 379
S ++E G + +++ D E G +P + GE+ ++G I
Sbjct: 336 NFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWIT 394
Query: 380 TGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXX 439
GY + EAT+S + +G+ TGDI D+ + I DRLK+LIK G ++
Sbjct: 395 GGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENAL 454
Query: 440 XSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFISKQVVFYKRINRVFFI 499
H + +AAVV + E P+A VV + E+ + + ++ + F
Sbjct: 455 MGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFA 514
Query: 500 DAIPKAPSGKILRKELRAKLAADY 523
+ IP+ +GK L++ LR + Y
Sbjct: 515 EEIPRTSAGKFLKRALREQYKNYY 538
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 149/336 (44%), Gaps = 12/336 (3%)
Query: 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILI 240
G L+H L ++ VD FT +D ++ LP++H + L L A + +
Sbjct: 172 GAXLSHDNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSXIF 227
Query: 241 MQKFEINSLLQLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAAPLGKELE 300
+ KF+ + +L L R +SP K R+ SG+APL +
Sbjct: 228 LPKFDPDKILDLXAR--ATVLXGVPTFYTRLLQSPRLTKETTGHXRLFISGSAPLLADTH 285
Query: 301 DAVRIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETG 360
K +A+L + YG TE + + P GA G + ++ DPETG
Sbjct: 286 REWSAKTGHAVL-ERYGXTETNXNTSNPYDGDRVP-----GAVGPALPGVSARVTDPETG 339
Query: 361 ASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLK 420
LP G I ++G + GY PE TKS +G+ TGD+G ID+ + I+ R K
Sbjct: 340 KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGK 399
Query: 421 ELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIK 480
+L+ GF V P + + ++AV+ + GE A VV+ + I E ++
Sbjct: 400 DLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVL 459
Query: 481 QFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELR 516
+ Q+ +K +V F+D +P+ GK+ + LR
Sbjct: 460 HGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQKNVLR 495
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 134/531 (25%), Positives = 218/531 (41%), Gaps = 62/531 (11%)
Query: 29 PKHLPLHSYCFENISKVASRPCLIN--GSTGDVYTYGEVELTARKIASGLNKLGIGQRDV 86
P +Y F A + I+ GST TYGE+E AR+ AS L LG+ +
Sbjct: 20 PALFNFAAYLFRLNETRAGKTAYIDDTGST----TYGELEERARRFASALRTLGVHPEER 75
Query: 87 IMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVK 146
I+L++ + +FLGA Y G + AN TPA+ S A+ +I + V V
Sbjct: 76 ILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVT 135
Query: 147 DLEEVKIMCIDSPPDGC-LHFSELTQADEKDLP---------------------HVGVML 184
E + DGC L S+ +++ + P + L
Sbjct: 136 QALE------SAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWL 189
Query: 185 THKGLVTSVAQQVDGENPNLYFTKE------------DAILCVLPLFHIYALNSIMLCGL 232
G T + + NLY+T E D + LF Y L + + L
Sbjct: 190 YSSG-STGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPL 248
Query: 233 RAGA-AILIMQKFEINSLLQLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSG 291
GA AIL+ ++ +++ + ++ SP +IRI S
Sbjct: 249 SVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSA 308
Query: 292 AAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAE 351
L +E+ + IL G G TE +L + LS ++ G G V E
Sbjct: 309 GEALPREIGERFTAHFGCEIL-DGIGSTE---MLHIFLS--NRAGAVEYGTTGRPVPGYE 362
Query: 352 MKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDND 411
+++ D E G ++P + G++ I+G Y N+ E +++T E W+ +GD N
Sbjct: 363 IELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPNG 420
Query: 412 ELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPV-AFVVKSN 470
R +++K G V+P H ++ +AAVV + D G V AFVV
Sbjct: 421 CYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV--DHGGLVKTRAFVVLKR 478
Query: 471 D---SQITEDEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAK 518
+ S+I +E+K F+ ++ +K + F+D +PK +GKI R +LR +
Sbjct: 479 EFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 147/339 (43%), Gaps = 15/339 (4%)
Query: 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILI 240
G ML+H L ++ VD FT +D ++ LP++H + L L A +++
Sbjct: 172 GAMLSHDNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIF 227
Query: 241 MQKFEINSLLQLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAAPLGKELE 300
+ F+ + +L L+ R +SP +R+ SG+APL +
Sbjct: 228 LPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTH 285
Query: 301 DAVRIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETG 360
+A+L + YGMTE + + P GA G + ++ DPETG
Sbjct: 286 REWSAXTGHAVL-ERYGMTETNMNTSNPYDGDRVP-----GAVGPALPGVSARVTDPETG 339
Query: 361 ASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLK 420
LP G I + G + GY PE T S +G+ TGD+G ID+ + I+ R
Sbjct: 340 XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGX 399
Query: 421 ELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSND---SQITED 477
+L+ GF V P + + ++AV+ + GE AFVV + S+I +
Sbjct: 400 DLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEILAE 459
Query: 478 EIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELR 516
E+ F+ ++ + V F+D +P+ G + LR
Sbjct: 460 ELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQXNVLR 498
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 144/336 (42%), Gaps = 12/336 (3%)
Query: 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILI 240
G ML+H L ++ VD FT +D ++ LP++H + L L A +++
Sbjct: 172 GAMLSHDNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIF 227
Query: 241 MQKFEINSLLQLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAAPLGKELE 300
+ F+ + +L L+ R +SP +R+ SG+APL +
Sbjct: 228 LPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTH 285
Query: 301 DAVRIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETG 360
+A+L + YGMTE + + P GA G + ++ DPETG
Sbjct: 286 REWSAXTGHAVL-ERYGMTETNMNTSNPYDGDRVP-----GAVGPALPGVSARVTDPETG 339
Query: 361 ASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLK 420
LP G I + G + GY PE T S +G+ TGD+G ID+ + I+ R
Sbjct: 340 XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGX 399
Query: 421 ELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIK 480
+L+ GF V P + + ++AV+ + GE A VV+ + I E ++
Sbjct: 400 DLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDXGATIDEAQVL 459
Query: 481 QFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELR 516
+ Q+ + V F+D +P+ G + LR
Sbjct: 460 HGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLR 495
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 144/336 (42%), Gaps = 12/336 (3%)
Query: 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILI 240
G ML+H L ++ VD FT +D ++ LP++H + L L A +++
Sbjct: 172 GAMLSHDNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIF 227
Query: 241 MQKFEINSLLQLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAAPLGKELE 300
+ F+ + +L L+ R +SP +R+ SG+APL +
Sbjct: 228 LPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTH 285
Query: 301 DAVRIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETG 360
+A+L + YGMTE + + P GA G + ++ DPETG
Sbjct: 286 REWSAXTGHAVL-ERYGMTETNMNTSNPYDGDRVP-----GAVGPALPGVSARVTDPETG 339
Query: 361 ASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLK 420
LP G I + G + GY PE T S +G+ TGD+G ID+ + I+ R
Sbjct: 340 XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGX 399
Query: 421 ELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIK 480
+L+ GF V P + + ++AV+ + GE AFVV + +E ++
Sbjct: 400 DLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEAQVL 459
Query: 481 QFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELR 516
+ Q+ + V F+D +P+ G + LR
Sbjct: 460 HGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLR 495
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 126/517 (24%), Positives = 222/517 (42%), Gaps = 55/517 (10%)
Query: 40 ENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVF 99
+ +K R + G+T ++Y E++ A ++A+G KLGI Q+D +++ LPN+ EF F
Sbjct: 33 DRAAKYGDRIAITCGNTH--WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF-F 89
Query: 100 SFLGASYR-GAIATAANPFFTPAET---CKQAKASG---------------AKLIITKAS 140
+ A +R GA+ A P +E C+ A+A+ A+ + +K
Sbjct: 90 EVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP 149
Query: 141 YVDKV------------KDL--EEVKIMCIDSPPDGCLHFSELTQADEKDLPHVGVMLTH 186
+ + +DL E VK+ + S L S + K +P TH
Sbjct: 150 TLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPR-----TH 204
Query: 187 KGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCG-LRAGAAILIMQKFE 245
+ S+ + V+ + L LP+ H Y L+S + G L AG +++
Sbjct: 205 DDYIYSLKRSVE----VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPS 260
Query: 246 INSLLQLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAAPLGKELEDAVRI 305
+ LIER K + + + DLSS+++L+ G A E A R+
Sbjct: 261 PDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEA--ARRV 318
Query: 306 K-LPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLP 364
K + L Q +GM E + + +P EI G + + V + +
Sbjct: 319 KAVFGCTLQQVFGMAEG----LVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVK 374
Query: 365 TNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIK 424
+ G + RG + GY E ++ ++G+ TGDI + + + + R K+ I
Sbjct: 375 PGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQIN 434
Query: 425 YKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFIS 484
G +VA +H ++ DAA+V M D GE F++ D E+K F+
Sbjct: 435 RGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFII-PRDEAPKAAELKAFLR 493
Query: 485 KQ-VVFYKRINRVFFIDAIPKAPSGKILRKELRAKLA 520
++ + YK +RV F+++ P+ GK+ +K LR ++
Sbjct: 494 ERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAIS 530
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 146/338 (43%), Gaps = 20/338 (5%)
Query: 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILI 240
G +++ L+ + + VD T+ D L +LPLFH+ L +ML +AG A +I
Sbjct: 177 GALISQGNLLIAQSSLVDAWR----LTEADVNLGMLPLFHVTGLG-LMLTLQQAGGASVI 231
Query: 241 MQKFEINSLLQLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAAPLGKELE 300
KF+ + IE +K + L+S+R + P E
Sbjct: 232 AAKFDPAQAARDIEAHKVTVMAEFAPMLGNILD--QAAPAQLASLRAVTGLDTP---ETI 286
Query: 301 DAVRIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETG 360
+ PNA +G +E + +FA P+ + + G + + +VD E
Sbjct: 287 ERFEATCPNATFWATFGQSET----SGLSTFA--PYRDRPKSAGRPLFWRTVAVVDAED- 339
Query: 361 ASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRL- 419
LP + GEI +RG + GY N+ AT+ + GW HTGD+G D + LF R
Sbjct: 340 RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAP 398
Query: 420 -KELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDE 478
KELIK G V P H +I DA V+ + D E A V I D
Sbjct: 399 EKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADA 458
Query: 479 IKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELR 516
+ +F++ + YK+ V F++A+PK G I R ++
Sbjct: 459 LAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVK 496
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 158/384 (41%), Gaps = 45/384 (11%)
Query: 61 TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTP 120
TY ++ A + A L LGI + D + LL+PN EF F GA+ GA+A N
Sbjct: 31 TYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAA 90
Query: 121 AETCKQAKASGAKLII---TKASYVDKVKD-----------------LEEVKIMCIDSPP 160
E SG+K++I A +D ++ E ++ D P
Sbjct: 91 PEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPA 150
Query: 161 DGC-------LHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAIL 213
C + ++ T K GV+ TH+ SV + D +L
Sbjct: 151 VECGGDDNLFIMYTSGTTGHPK-----GVVHTHE----SVHSAASSWASTIDVRYRDRLL 201
Query: 214 CVLPLFHIYALNSIMLCGLRAGAAILIMQKFEINSLLQLIERYKXXXXXXXXXXXXXXXK 273
LP+FH+ AL +++ +R G ++ M +F+ + LI + +
Sbjct: 202 LPLPMFHVAALTTVIFSAMR-GVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQ 260
Query: 274 SPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAMCLSFAK 333
PE + D R +G AP+ + L K N + QGY +TE+ + LS
Sbjct: 261 VPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLS--- 315
Query: 334 EPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTI 393
E KAG+ G ++ + + + + GE+ I+ D ++ Y N PEAT+
Sbjct: 316 EDALRKAGSAGRATMFTDVAVRGDD--GVIREHGEGEVVIKSDILLKEYWNRPEATRDAF 373
Query: 394 DKEGWLHTGDIGYIDDNDELFIVD 417
D GW TGDIG IDD L+I D
Sbjct: 374 DN-GWFRTGDIGEIDDEGYLYIKD 396
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 141/317 (44%), Gaps = 19/317 (5%)
Query: 199 GENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEINSLLQLIERYKX 258
G +L F ++ L VLP++HI L S++L + G + I+ KF +L +I+ +
Sbjct: 194 GCKESLGFDRDTNWLSVLPIYHISGL-SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERI 252
Query: 259 XXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGM 318
+ E Y+L +IL GA +E A++ LP + +GM
Sbjct: 253 THISLVPQTLNWLMQQGLHEPYNLQ--KILLGGAKLSATMIETALQYNLP---IYNSFGM 307
Query: 319 TEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQI 378
TE + L+ E + G N ++KI +P GE+ I+G +
Sbjct: 308 TET---CSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH------GELMIKGANV 358
Query: 379 MTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXX 438
M GYL + T + + G+ +TGDI ID + I DR K+LI G + P
Sbjct: 359 MNGYLYPTDLTGTF--ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETV 416
Query: 439 XXSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFISKQVVFYKRINRVFF 498
I+DA V DD G+VP + V +D I++ ++ ++SK + YK
Sbjct: 417 AKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD--ISKAQLIAYLSKHLAKYKVPKHFEK 474
Query: 499 IDAIPKAPSGKILRKEL 515
+D +P +GK+ R +L
Sbjct: 475 VDTLPYTSTGKLQRNKL 491
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 126/517 (24%), Positives = 219/517 (42%), Gaps = 55/517 (10%)
Query: 40 ENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVF 99
+ +K R + G+T ++Y E++ A ++A+G KLGI Q+D +++ LPN+ EF F
Sbjct: 33 DRAAKYGDRIAITCGNTH--WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF-F 89
Query: 100 SFLGASYR-GAIATAANPFFTPAET---CKQAKASG---------------AKLIITKAS 140
+ A +R GA+ A P +E C+ A+A+ A+ + +K
Sbjct: 90 EVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP 149
Query: 141 YVDKV------------KDL--EEVKIMCIDSPPDGCLHFSELTQADEKDLPHVGVMLTH 186
+ + +DL E VK+ + S L S + K +P TH
Sbjct: 150 TLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPR-----TH 204
Query: 187 KGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCG-LRAGAAILIMQKFE 245
+ S+ + V+ + L LP H Y L+S + G L AG +++
Sbjct: 205 DDYIYSLKRSVE----VCWLDHSTVYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPS 260
Query: 246 INSLLQLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAAPLGKELEDAVRI 305
+ LIER K + + + DLSS+++L+ G A E A R+
Sbjct: 261 PDDAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLSSLQVLQVGGAKFSAEA--ARRV 318
Query: 306 K-LPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLP 364
K + L Q +G E + + +P EI G + V + +
Sbjct: 319 KAVFGCTLQQVFGXAEG----LVNYTRLDDPEEIIVNTQGKPXSPYDESRVWDDHDRDVK 374
Query: 365 TNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIK 424
+ G + RG + GY E ++ ++G+ TGDI + + + + R K+ I
Sbjct: 375 PGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQIN 434
Query: 425 YKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFIS 484
G +VA +H ++ DAA V D GE F++ D E+K F+
Sbjct: 435 RGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFII-PRDEAPKAAELKAFLR 493
Query: 485 KQ-VVFYKRINRVFFIDAIPKAPSGKILRKELRAKLA 520
++ + YK +RV F+++ P+ GK+ +K LR ++
Sbjct: 494 ERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAIS 530
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 118/511 (23%), Positives = 210/511 (41%), Gaps = 71/511 (13%)
Query: 59 VYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFF 118
++T+ +++ + K A+ K GIG+ D +ML L + +F + LG GAIA A
Sbjct: 86 IFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHML 145
Query: 119 TPAETCKQAKASGAKLIITKAS-------------------------------YVDKVKD 147
+ + + +G K+I+ A ++D K+
Sbjct: 146 KTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKE 205
Query: 148 LEEVKIMCIDSPP--------DGCL-HFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVD 198
LEE + + P D CL +FS T K + H L Q V
Sbjct: 206 LEESSPI-FERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNV- 263
Query: 199 GENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQ--KFEINSLLQLIERY 256
E+ L++T D+ +Y AG A+ + +FE ++L+ +Y
Sbjct: 264 -EDDGLHYTVADSGWGKCVWGKLYGQ-------WIAGCAVFVYDYDRFEAKNMLEKASKY 315
Query: 257 KXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGY 316
K + Y+ S+++ PL E+ + ++ L +G+
Sbjct: 316 GVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNRF-LEFTGIKLMEGF 373
Query: 317 GMTEAGPVLAMCLSFAKEPF-EIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRG 375
G TE ++ A P+ E K G+ G +++++D + G + GEI I
Sbjct: 374 GQTET------VVTIATFPWMEPKPGSIGKPTPGYKIELMDRD-GRLCEVGEEGEIVINT 426
Query: 376 DQ-----IMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQV 430
+ + Y DPE T+ T +G+ HTGD+ ++D++ L+ V R ++IK G++V
Sbjct: 427 MEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKV 485
Query: 431 APXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSND---SQITEDEIKQFISKQV 487
P H ++ + A+ + D G+V A +V + D S ++E++ +
Sbjct: 486 GPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVT 545
Query: 488 VFYKRINRVFFIDAIPKAPSGKILRKELRAK 518
YK + F+ +PK SGKI R E+R K
Sbjct: 546 APYKYPRIIEFVPELPKTISGKIRRVEIRDK 576
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 160/350 (45%), Gaps = 28/350 (8%)
Query: 178 PHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAA 237
P G ++ + L T++ D +T ED ++ LPLFH++ L +L LR G +
Sbjct: 169 PPKGAVIPRRALATTLDALADA----WQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGS 224
Query: 238 ILIMQKFEINSLLQLIERYKXX---XXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAAP 294
+ + +F + + PE K L+ R+L SG+A
Sbjct: 225 VRHLGRFSTEGAARELNDGATMLFGVPTMYHRIAETLPADPELAKA-LAGARLLVSGSAA 283
Query: 295 LGKELEDAVRIKLPNAILG----QGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNA 350
L + D RI A G + YGMTE ++ + EP +AG G +
Sbjct: 284 L--PVHDHERIA---AATGRRVIERYGMTET--LMNTSVRADGEP---RAGTVGVPLPGV 333
Query: 351 EMKIVDPETG---ASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYI 407
E+++V+ E G A+L GEI +RG + T YLN P+AT + ++G+ TGD+
Sbjct: 334 ELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVR 392
Query: 408 DDNDELFIVDR-LKELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFV 466
D + + IV R +LIK G+++ H + +AAV D GE VA++
Sbjct: 393 DPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWI 452
Query: 467 VKSNDSQITE-DEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKEL 515
V ++ + + ++ ++ +KR V ++DA+P+ GKI+++ L
Sbjct: 453 VPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRAL 502
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 117/494 (23%), Positives = 204/494 (41%), Gaps = 47/494 (9%)
Query: 61 TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTP 120
+Y E++ + +A+ L + G+G+ D ++ LPNV EF F G + A
Sbjct: 57 SYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQ 116
Query: 121 AETCKQAKASGAKLII--------TKASYVDKVKDLE---EVKIM------------CID 157
E K KL+I + ++D + D+ E+ +M I+
Sbjct: 117 YELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIE 176
Query: 158 SPPDGCLHFSELTQADEKDLPHVG---------VMLTHKGLVTSV--AQQVDGENPNLYF 206
+P + + FS T ADE + + TH SV + ++ G N N
Sbjct: 177 TPAETFVDFSS-TPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSN--- 232
Query: 207 TKEDAILCVLPLFHIYALNSIMLCG-LRAGAAILIMQKFEINSLLQLIERYKXXXXXXXX 265
+LC LP H + L+S G L AG +++ E + +I+R++
Sbjct: 233 ---TRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVP 289
Query: 266 XXXXXXXKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVL 325
+ K + S+++L+ G A + L V ++ N L Q +GM E G V
Sbjct: 290 SAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVP-EVLNCKLQQVFGMAE-GLVN 347
Query: 326 AMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLND 385
L + E G + + E+KIVD E +P + G + RG GY
Sbjct: 348 YTRLDDSDEQIFTTQGR--PISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQS 404
Query: 386 PEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSI 445
PE D++ + ++GD+ + L +V R+K+ I G ++A H +
Sbjct: 405 PEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEV 464
Query: 446 TDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFISKQVVFYKRINRVFFIDAIPKA 505
AA+V + D+ GE AF+V N + + + YK +++ I+++P
Sbjct: 465 MHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLT 524
Query: 506 PSGKILRKELRAKL 519
GK+ +K+LR+ L
Sbjct: 525 AVGKVDKKQLRSIL 538
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 122/503 (24%), Positives = 204/503 (40%), Gaps = 62/503 (12%)
Query: 61 TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLG----------------A 104
+Y E+ A +A L + GI + ++ L NV E +F
Sbjct: 52 SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQR 111
Query: 105 SYRGAIATAANPFFTPAETCKQAKASGAKLI---ITKASYVDKVKDLEEV---------- 151
S A A+ P A+ + A SG + +T+ S + V+ L +
Sbjct: 112 SELNAYASQIEPALLIADR-QHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAIN 170
Query: 152 ----KIMCIDSPPDGCLHF--SELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLY 205
SP D +F S T K +P TH SV + V+
Sbjct: 171 HPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPR-----THNDYYYSVRRSVE----ICQ 221
Query: 206 FTKEDAILCVLPLFHIYALNSIMLCGL-RAGAAILIMQKFEINSLLQLIERYKXXXXXXX 264
FT++ LC +P H YA++S G+ AG +++ LIE+++
Sbjct: 222 FTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALV 281
Query: 265 XXXXXXXXKS--PETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAI---LGQGYGMT 319
++ + L+S+++L+ G A L L A RI P I L Q +GM
Sbjct: 282 PPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATL--AARI--PAEIGCQLQQVFGMA 337
Query: 320 EAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIM 379
E G V L + E G + + E+ + D E G LP + G + RG
Sbjct: 338 E-GLVNYTRLDDSAEKIIHTQGY--PMCPDDEVWVADAE-GNPLPQGEVGRLMTRGPYTF 393
Query: 380 TGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXX 439
GY P+ S D G+ +GD+ ID + + R K+ I G ++A
Sbjct: 394 RGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLL 453
Query: 440 XSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFISKQ-VVFYKRINRVFF 498
H ++ AA+V M+D+ GE A++V + ++++F+ +Q + +K +RV
Sbjct: 454 LRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAV--QVRRFLREQGIAEFKLPDRVEC 511
Query: 499 IDAIPKAPSGKILRKELRAKLAA 521
+D++P GK+ +K+LR LA+
Sbjct: 512 VDSLPLTAVGKVDKKQLRQWLAS 534
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 17/215 (7%)
Query: 314 QGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICI 373
+ YG TE G C+ + +IK G GT +++I+D + G LP G+I I
Sbjct: 352 ESYGQTETG---LTCM--VSKTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGI 405
Query: 374 RGD-----QIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGF 428
R I +GY+++P+ T + I + WL GD G D++ + R ++I G+
Sbjct: 406 RVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGY 464
Query: 429 QVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVV-----KSNDSQITEDEIKQFI 483
++ P H ++ + AV+ D GEV AFVV S+D + E++Q +
Sbjct: 465 RIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHV 524
Query: 484 SKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAK 518
YK ++ F+ +PK +GKI R +LR K
Sbjct: 525 KSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 39 FENISKVASRP-----CLINGSTGDV-YTYGEVELTARKIASGLN-KLGIGQRDVIMLLL 91
+ ++ K RP +NG ++ + + E+ +++ A+ L+ G+ + D + ++L
Sbjct: 47 WADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVL 106
Query: 92 PNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLE-- 149
P VPE+ LG G I + + + S AK I+ + +V +
Sbjct: 107 PRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASE 166
Query: 150 ----EVKIMCIDSPPDGCLHFSEL 169
+K++ + DG L+F +L
Sbjct: 167 CPSLRIKLLVSEKSCDGWLNFKKL 190
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 17/215 (7%)
Query: 314 QGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICI 373
+ YG TE G C+ + +IK G GT +++I+D + G LP G+I I
Sbjct: 352 ESYGQTETG---LTCM--VSKTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGI 405
Query: 374 RGD-----QIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGF 428
R I +GY+++P+ T + I + WL GD G D++ + R ++I G+
Sbjct: 406 RVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGY 464
Query: 429 QVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVV-----KSNDSQITEDEIKQFI 483
++ P H ++ + AV+ D GEV AFVV S+D + E++Q +
Sbjct: 465 RIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHV 524
Query: 484 SKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAK 518
YK ++ F+ +PK +GKI R +LR K
Sbjct: 525 KSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 39 FENISKVASRP-----CLINGSTGDV-YTYGEVELTARKIASGLN-KLGIGQRDVIMLLL 91
+ ++ K RP +NG ++ + + E+ +++ A+ L+ G+ + D + ++L
Sbjct: 47 WADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVL 106
Query: 92 PNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLE-- 149
P VPE+ LG G I + + + S AK I+ + +V +
Sbjct: 107 PRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASE 166
Query: 150 ----EVKIMCIDSPPDGCLHFSEL 169
+K++ + DG L+F +L
Sbjct: 167 CPSLRIKLLVSEKSCDGWLNFKKL 190
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 106/492 (21%), Positives = 193/492 (39%), Gaps = 61/492 (12%)
Query: 61 TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTP 120
T+ E+ +A+ L+ G+ + + ++ PN + V + L GA+ NP
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 121 AETCKQAK----------------------ASGAKLIITKASYVDKVKDLEEVKIMC-ID 157
AE + K SGA++I D V+D E I+
Sbjct: 91 AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVRDGEPYSYGPPIE 146
Query: 158 SP------PDGCLHFSELTQADEKDLPHVGVM--LTHKGLVTSVAQQVDGENPNLYFTKE 209
P P + S T LP ++ + V ++ QV L +
Sbjct: 147 DPQREPAQPAFIFYTSGTT-----GLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRH 196
Query: 210 DAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEINSLLQLI--ERYKXXXXXXXXXX 267
+ +L ++PL+H+ ++++ L +++++F LQL+ E+
Sbjct: 197 NVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLD 256
Query: 268 XXXXXKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAM 327
+ L S+R + A + + + V LP + GYG TEA M
Sbjct: 257 ALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NGYGTTEA-----M 310
Query: 328 CLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGAS--LPTNKPGEICIRG-DQIMTGYLN 384
+ ++P A G +E++IV G + + GE+ + D GYLN
Sbjct: 311 NSLYMRQPKTGTEMAPGFF---SEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLN 367
Query: 385 DPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSS 444
P+AT + ++GW T D+ + I+ R+ ++I G + P +
Sbjct: 368 QPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPG 426
Query: 445 ITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFI-SKQVVFYKRINRVFFIDAIP 503
+T+ V+ + D G+ A VV ++ D + F S ++ +KR R F +D +P
Sbjct: 427 VTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLP 486
Query: 504 KAPSGKILRKEL 515
K K+LR++L
Sbjct: 487 KNALNKVLRRQL 498
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 105/492 (21%), Positives = 192/492 (39%), Gaps = 61/492 (12%)
Query: 61 TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTP 120
T+ E+ +A+ L+ G+ + + ++ PN + V + L GA+ NP
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 121 AETCKQAK----------------------ASGAKLIITKASYVDKVKDLEEVKIMC-ID 157
AE + K SGA++I D V+D E I+
Sbjct: 91 AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVRDGEPYSYGPPIE 146
Query: 158 SP------PDGCLHFSELTQADEKDLPHVGVM--LTHKGLVTSVAQQVDGENPNLYFTKE 209
P P + S T LP ++ + V ++ QV L +
Sbjct: 147 DPQREPAQPAFIFYTSGTT-----GLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRH 196
Query: 210 DAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEINSLLQLI--ERYKXXXXXXXXXX 267
+ +L ++PL+H+ ++++ L +++++F LQL+ E+
Sbjct: 197 NVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLD 256
Query: 268 XXXXXKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAM 327
+ L S+R + A + + + V LP + YG TEA M
Sbjct: 257 ALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NAYGTTEA-----M 310
Query: 328 CLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGAS--LPTNKPGEICIRG-DQIMTGYLN 384
+ ++P A G +E++IV G + + GE+ + D GYLN
Sbjct: 311 NSLYMRQPKTGTEMAPGFF---SEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLN 367
Query: 385 DPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSS 444
P+AT + ++GW T D+ + I+ R+ ++I G + P +
Sbjct: 368 QPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPG 426
Query: 445 ITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFI-SKQVVFYKRINRVFFIDAIP 503
+T+ V+ + D G+ A VV ++ D + F S ++ +KR R F +D +P
Sbjct: 427 VTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLP 486
Query: 504 KAPSGKILRKEL 515
K K+LR++L
Sbjct: 487 KNALNKVLRRQL 498
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 106/492 (21%), Positives = 192/492 (39%), Gaps = 61/492 (12%)
Query: 61 TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTP 120
T+ E+ +A+ L+ G+ + + ++ PN + V + L GA+ NP
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 121 AETCKQAK----------------------ASGAKLIITKASYVDKVKDLEEVKIMC-ID 157
AE + K SGA++I D V+D E I+
Sbjct: 91 AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVRDGEPYSYGPPIE 146
Query: 158 SP------PDGCLHFSELTQADEKDLPHVGVM--LTHKGLVTSVAQQVDGENPNLYFTKE 209
P P + S T LP ++ + V ++ QV L +
Sbjct: 147 DPQREPAQPAFIFYTSGTT-----GLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRH 196
Query: 210 DAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEINSLLQLI--ERYKXXXXXXXXXX 267
+ +L ++PL+H+ ++++ L +++++F LQL+ E+
Sbjct: 197 NVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLD 256
Query: 268 XXXXXKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAM 327
+ L S+R + A + + + V LP + YG TEA M
Sbjct: 257 ALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI-YGTTEA-----M 310
Query: 328 CLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGAS--LPTNKPGEICIRG-DQIMTGYLN 384
+ ++P A G +E++IV G + + GE+ + D GYLN
Sbjct: 311 NSLYMRQPKTGTEMAPGFF---SEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLN 367
Query: 385 DPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSS 444
PEAT + ++GW T D+ + I+ R+ ++I G + P +
Sbjct: 368 QPEATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPG 426
Query: 445 ITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFI-SKQVVFYKRINRVFFIDAIP 503
+T+ V+ + D G+ A VV ++ D + F S ++ +KR R F +D +P
Sbjct: 427 VTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLP 486
Query: 504 KAPSGKILRKEL 515
K K+LR++L
Sbjct: 487 KNALNKVLRRQL 498
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 105/492 (21%), Positives = 192/492 (39%), Gaps = 61/492 (12%)
Query: 61 TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTP 120
T+ E+ +A+ L+ G+ + + ++ PN + V + L GA+ NP
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 121 AETCKQAK----------------------ASGAKLIITKASYVDKVKDLEEVKIMC-ID 157
AE + K SGA++I D V+D E I+
Sbjct: 91 AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVRDGEPYSYGPPIE 146
Query: 158 SP------PDGCLHFSELTQADEKDLPHVGVM--LTHKGLVTSVAQQVDGENPNLYFTKE 209
P P + S T LP ++ + V ++ QV L +
Sbjct: 147 DPQREPAQPAFIFYTSGTT-----GLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRH 196
Query: 210 DAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEINSLLQLI--ERYKXXXXXXXXXX 267
+ +L ++PL+H+ ++++ L +++++F LQL+ E+
Sbjct: 197 NVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLD 256
Query: 268 XXXXXKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAM 327
+ L S+R + A + + + V LP + YG TEA M
Sbjct: 257 ALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI-YGTTEA-----M 310
Query: 328 CLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGAS--LPTNKPGEICIRG-DQIMTGYLN 384
+ ++P A G +E++IV G + + GE+ + D GYLN
Sbjct: 311 NSLYMRQPKTGTEMAPGFF---SEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLN 367
Query: 385 DPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSS 444
P+AT + ++GW T D+ + I+ R+ ++I G + P +
Sbjct: 368 QPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPG 426
Query: 445 ITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFI-SKQVVFYKRINRVFFIDAIP 503
+T+ V+ + D G+ A VV ++ D + F S ++ +KR R F +D +P
Sbjct: 427 VTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLP 486
Query: 504 KAPSGKILRKEL 515
K K+LR++L
Sbjct: 487 KNALNKVLRRQL 498
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 105/492 (21%), Positives = 192/492 (39%), Gaps = 61/492 (12%)
Query: 61 TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTP 120
T+ E+ +A+ L+ G+ + + ++ PN + V + L GA+ NP
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 121 AETCKQAK----------------------ASGAKLIITKASYVDKVKDLEEVKIMC-ID 157
AE + K SGA++I D V+D E I+
Sbjct: 91 AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVRDGEPYSYGPPIE 146
Query: 158 SP------PDGCLHFSELTQADEKDLPHVGVM--LTHKGLVTSVAQQVDGENPNLYFTKE 209
P P + S T LP ++ + V ++ QV L +
Sbjct: 147 DPQREPAQPAFIFYTSGTT-----GLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRH 196
Query: 210 DAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEINSLLQLI--ERYKXXXXXXXXXX 267
+ +L ++PL+H+ ++++ L +++++F LQL+ E+
Sbjct: 197 NVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLD 256
Query: 268 XXXXXKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAM 327
+ L S+R + A + + + V LP + YG TEA M
Sbjct: 257 ALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI-YGTTEA-----M 310
Query: 328 CLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGAS--LPTNKPGEICIRG-DQIMTGYLN 384
+ ++P A G +E++IV G + + GE+ + D GYLN
Sbjct: 311 NSLYMRQPKTGTEMAPGFF---SEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLN 367
Query: 385 DPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSS 444
P+AT + ++GW T D+ + I+ R+ ++I G + P +
Sbjct: 368 QPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPG 426
Query: 445 ITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFI-SKQVVFYKRINRVFFIDAIP 503
+T+ V+ + D G+ A VV ++ D + F S ++ +KR R F +D +P
Sbjct: 427 VTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLP 486
Query: 504 KAPSGKILRKEL 515
K K+LR++L
Sbjct: 487 KNALNKVLRRQL 498
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 105/492 (21%), Positives = 188/492 (38%), Gaps = 61/492 (12%)
Query: 61 TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTP 120
T+ E+ +A+ L+ G+ + + ++ PN + V + L GA+ NP
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 121 AETCKQAK----------------------ASGAKLIITKASYVDKVKDLEEVKIMC-ID 157
AE + K SGA++I D V+D E I+
Sbjct: 91 AELAELIKRGEXTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVRDGEPYSYGPPIE 146
Query: 158 SP------PDGCLHFSELTQADEKDLPHVGVM--LTHKGLVTSVAQQVDGENPNLYFTKE 209
P P + S T LP ++ + V + QV L +
Sbjct: 147 DPQREPAQPAFIFYTSGTT-----GLPKAAIIPQRAAESRVLFXSTQV-----GLRHGRH 196
Query: 210 DAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEINSLLQLI--ERYKXXXXXXXXXX 267
+ +L + PL+H+ ++++ L +++++F LQL+ E+
Sbjct: 197 NVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLD 256
Query: 268 XXXXXKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAM 327
+ L S+R + A + + V LP + YG TEA L
Sbjct: 257 ALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNI-YGTTEAXNSL-- 313
Query: 328 CLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGAS--LPTNKPGEICIRG-DQIMTGYLN 384
+ ++P A G +E++IV G + + GE+ + D GYLN
Sbjct: 314 ---YXRQPKTGTEXAPGFF---SEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLN 367
Query: 385 DPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSS 444
P+AT + ++GW T D+ + I+ R+ + I G + P +
Sbjct: 368 QPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPG 426
Query: 445 ITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFI-SKQVVFYKRINRVFFIDAIP 503
+T+ V+ + D G+ A VV ++ D + F S ++ +KR R F +D +P
Sbjct: 427 VTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLP 486
Query: 504 KAPSGKILRKEL 515
K K+LR++L
Sbjct: 487 KNALNKVLRRQL 498
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 119/536 (22%), Positives = 206/536 (38%), Gaps = 86/536 (16%)
Query: 61 TYGEVELTARKIASGLN-KLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFT 119
TY E+ ++A L +G+ + D + + +P VPE + + L S GAI + F+
Sbjct: 115 TYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFS 174
Query: 120 PAE-------------TCKQAKASGAKLIITKASYVDKVKDLEEVKIMCI---DSPPDGC 163
G K+I TK D +++ V+ + + + P
Sbjct: 175 SNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA 234
Query: 164 LH----------------FSELTQADEKD----LPHVGVMLTHKGLVTSVAQQVDGENPN 203
H + T D +D L G KG+ S A + G
Sbjct: 235 FHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLT 294
Query: 204 LYFT----KEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKF----EINSLLQLIER 255
+ +T +ED + I ++ L G A L+ + + +I+
Sbjct: 295 MRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDE 354
Query: 256 YKXXXXXXXXXXXXXXXKSPET--EKYDLSSIRILKSGAAPLGKELEDAVRIKL-PNAI- 311
+K ++ ++ E + L S+R L S P+ E+ + K+ N I
Sbjct: 355 HKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIP 414
Query: 312 LGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKP-GE 370
+ Y TE+G L L+ P +K G+ + ++DP TG L T+ G
Sbjct: 415 IVDTYWQTESGSHLVTPLAGGVTP--MKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGV 472
Query: 371 ICIRG-------------DQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVD 417
+ ++ D+ + YLN G+ TGD D + ++I+
Sbjct: 473 LAVKAAWPSFARTIWKNHDRYLDTYLNP---------YPGYYFTGDGAAKDKDGYIWILG 523
Query: 418 RLKELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVV---KSNDSQI 474
R+ +++ G +++ + + AVV DD G+ AFVV KS+ S
Sbjct: 524 RVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTA 583
Query: 475 TEDEIKQFISKQVVFYKRIN--------RVFFIDAIPKAPSGKILRKELRAKLAAD 522
T+DE+ Q I K +VF R + + +D +PK SGKI+R+ LR LA +
Sbjct: 584 TDDEL-QDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 123/541 (22%), Positives = 203/541 (37%), Gaps = 79/541 (14%)
Query: 51 LINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLL-PNVPEFVFSFLGASYRGA 109
+N + TY +++ A+ IA+ L G D ++LL P +P + +FLG Y G
Sbjct: 32 FLNKELEETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLP-LIQAFLGCLYAGC 90
Query: 110 IATAANPFFTPAETCKQAKA------SGAKLIITKASYVDKVKDLE-----------EVK 152
IA P + PA+ KA S +++ A ++ K E +
Sbjct: 91 IAV---PIYPPAQEKLLDKAQRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIPAIA 147
Query: 153 IMCIDSPPDGCLHFSELTQADEKDLPHVGVMLTH-KGLVTSVAQQVDGEN---PNLYFTK 208
+ I+ + + D L + H KG+ S +D N + +
Sbjct: 148 LESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXND 207
Query: 209 EDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEIN----SLLQLIERYKXXXXXXX 264
E I LP H L +L + G + F S L+ I +YK
Sbjct: 208 ETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLKHITKYKATISGSP 267
Query: 265 XXXXXXXXKSPETEK---YDLSSIRILKSGAAPLGKELEDAV-----RIKLPNAILGQGY 316
K EK DLSS +GA P+ +E + Y
Sbjct: 268 NFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQAFKEFGFRKEAFYPCY 327
Query: 317 GMTEAGPVLA--------MCLSFAKEPFE--------------IKAGACGTVVRNAEMKI 354
G+ EA ++ L+ AKE F+ K + G ++ E+KI
Sbjct: 328 GLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQ--EVKI 385
Query: 355 VDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTI-----DKEG---WLHTGDIGY 406
+DP+T ++ GEI ++ + + GY N PE T+ D E +L TGD+G+
Sbjct: 386 IDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGF 445
Query: 407 IDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXS---HSSITDAAVVPMKDDAAGEVPV 463
+ +N EL++ R+K+LI G P H + A ++++ ++ V
Sbjct: 446 LHEN-ELYVTGRIKDLIIIYGKNHYPQDIEFSLXHSPLHHVLGKCAAFVIQEEHEYKLTV 504
Query: 464 AFVVKSN-DSQITED----EIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAK 518
VK+ + +D EI + + + + + A P SGKI R R
Sbjct: 505 XCEVKNRFXDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAXPHTTSGKIRRNFCRKH 564
Query: 519 L 519
L
Sbjct: 565 L 565
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 17/227 (7%)
Query: 306 KLPNAILGQGYGMTEAGPVLAMCLSFAKEPFE----IKAGACGTVVRNAEMKIVDPETGA 361
+ P A + YG TEA V + +E + + G C + R MK E G
Sbjct: 284 RFPKATIMNTYGPTEAT-VAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK----EDGT 338
Query: 362 SLPTNKPGEICIRGDQIMTGYLNDPEATK---STIDKEGWLHTGDIGYIDDNDELFIVDR 418
P + GEI I G + GYL PE T+ + ID E TGD GY+ +N LF R
Sbjct: 339 IAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGR 397
Query: 419 LKELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITE-- 476
L IK G+++ + S + A +VP+K + +A VV S E
Sbjct: 398 LDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFK 457
Query: 477 --DEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAA 521
IK+ +++++ Y + + +IP P+GK+ RK+L +++ A
Sbjct: 458 LTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTA 504
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 17/227 (7%)
Query: 306 KLPNAILGQGYGMTEAGPVLAMCLSFAKEPFE----IKAGACGTVVRNAEMKIVDPETGA 361
+ P A + YG TEA V + +E + + G C + R MK E G
Sbjct: 284 RFPKATIMNTYGPTEAT-VAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK----EDGT 338
Query: 362 SLPTNKPGEICIRGDQIMTGYLNDPEATK---STIDKEGWLHTGDIGYIDDNDELFIVDR 418
P + GEI I G + GYL PE T+ + ID E TGD GY+ +N LF R
Sbjct: 339 IAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGR 397
Query: 419 LKELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITE-- 476
L IK G+++ + S + A +VP+K + +A VV S E
Sbjct: 398 LDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFK 457
Query: 477 --DEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAA 521
IK+ +++++ Y + + +IP P+GK+ RK+L +++ A
Sbjct: 458 LTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTA 504
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 111/514 (21%), Positives = 195/514 (37%), Gaps = 55/514 (10%)
Query: 33 PLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLP 92
PL + E ++ P L +G +Y E++ A +IA L K G G+ V+ L
Sbjct: 465 PLTYWFKEAVNANPDAPALT--YSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTK 522
Query: 93 NVPEFVFSFLGASYRGAIATAANP----------FFTPAETC----KQAKASGAKLIITK 138
E V LG GA +P A C ++ K A+L T
Sbjct: 523 RSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTG 582
Query: 139 AS-YVDKVKDLEEVK---IMCIDSPPDGCLHFSELTQADEKDLPHVGVMLTHKGLVTSVA 194
+ ++D EE ID + ++ T K G + TH + +
Sbjct: 583 TTLFIDDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPK-----GNITTHAN-IQGLV 636
Query: 195 QQVDGENPNLYFTKEDAILCVLPLFHIYALNSIML---CGLRAGAAILIMQK---FEINS 248
+ VD + F+ +D L V YA ++ + A ++I + +
Sbjct: 637 KHVD----YMAFSDQDTFLSV----SNYAFDAFTFDFYASMLNAARLIIADEHTLLDTER 688
Query: 249 LLQLIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIR-ILKSGAAPLGKELEDAVRIKL 307
L LI + + E + +R IL G + A+RI
Sbjct: 689 LTDLILQENVNVMFATTALFNLLTDAGEDW---MKGLRCILFGGERASVPHVRKALRIMG 745
Query: 308 PNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNK 367
P ++ YG TE G V A P I + G + NA + I++ ++ P
Sbjct: 746 PGKLIN-CYGPTE-GTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQ-PFGA 802
Query: 368 PGEICIRGDQIMTGYLNDPEATKSTIDK------EGWLHTGDIGYIDDNDELFIVDRLKE 421
GE+CI G + GY+N + TK + E TGD+ + + R+ +
Sbjct: 803 VGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDD 862
Query: 422 LIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQ 481
+K +G ++ + + DA VV + ++ A++V N +Q++ +++K
Sbjct: 863 QVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLV--NRTQLSAEDVKA 920
Query: 482 FISKQVVFYKRINRVFFIDAIPKAPSGKILRKEL 515
+ KQ+ Y F+D +P +GK+ ++ L
Sbjct: 921 HLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLL 954
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 100/436 (22%), Positives = 162/436 (37%), Gaps = 71/436 (16%)
Query: 58 DVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATA-ANP 116
D Y ++ A A L L + + D + L+ EFV +F Y G +A A P
Sbjct: 47 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIP 106
Query: 117 FFTPAETCKQAKASGAKLIITKASYVDKVKDLEEVKIMCIDSPPDGCL---HFSELTQAD 173
AK G A+ + + L V D+P L F L +AD
Sbjct: 107 XGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHAWFKALPEAD 166
Query: 174 ---EKDLPH---------------VGVMLTHKGLVTSV-AQQVDGENPNLYFTKEDAILC 214
++ +P+ GV++TH+ + ++ A DG + D +
Sbjct: 167 VALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDG----IKLRPGDRCVS 222
Query: 215 VLPLFHIYALNSIMLCGLRAGAAI--LIMQKFEINSL--LQLIERYKXXXXXXXXXXXXX 270
LP +H L +L + ++ L Q F L L+LI + +
Sbjct: 223 WLPFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTVSVAPPFGYEL 282
Query: 271 XXK---SPETEKYDLSSIRILKSGAAPLGKE-----LEDAVRIKLPNAILGQGYGMTEAG 322
+ + + DLS R+ GA P+ E E ++ N YG+ E
Sbjct: 283 CQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLAEN- 341
Query: 323 PVLAMCLSFAKEP--------------FEIKAGACGTVVRNAEMKI------------VD 356
A+ +SF+ E ++ KA A G R + +
Sbjct: 342 ---ALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIR 398
Query: 357 PETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIV 416
E G + G ICI G + +GY D + ++ I GWL TGD+GY+ D L++
Sbjct: 399 NEAGXPVAERVVGHICISGPSLXSGYFGD-QVSQDEIAATGWLDTGDLGYLLDG-YLYVT 456
Query: 417 DRLKELIKYKGFQVAP 432
R+K+LI +G + P
Sbjct: 457 GRIKDLIIIRGRNIWP 472
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 26/228 (11%)
Query: 306 KLPNAILGQGYGMTEAGPVLA-------MCLSFAKEPFEIKAGACGTVVRNAEMKIVDPE 358
+ P+A + YG TEA L+ M ++ + P G ++ I+D E
Sbjct: 287 RFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLP-------IGYPKPDSPTYIID-E 338
Query: 359 TGASLPTNKPGEICIRGDQIMTGYLNDPEATKS---TIDKEGWLHTGDIGYIDDNDELFI 415
G L + + GEI + G + GYLN+PE T T + HTGDIG + +++ L
Sbjct: 339 DGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLY 398
Query: 416 VDRLKELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPM--KDDAAGEVPVAFVVKSNDSQ 473
RL IKY G+++ + A VP K+ + VVK +
Sbjct: 399 GGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKE 458
Query: 474 ITEDE------IKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKEL 515
+ E IK + ++ Y ++ + D++P P+GKI K L
Sbjct: 459 RFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTL 506
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 112/519 (21%), Positives = 205/519 (39%), Gaps = 63/519 (12%)
Query: 29 PKHLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIM 88
P+ +H E +SK + ++ + TY E+ + A ++A + GIG+ ++
Sbjct: 36 PRDKTIHQLFEEQVSKRPNNVAIV--CENEQLTYHELNVKANQLARIFIEKGIGKDTLVG 93
Query: 89 LLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDL 148
+++ + L G + + S A++++T+ V + ++
Sbjct: 94 IMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI 153
Query: 149 E---EVKIMCIDSPP--DGC-LHFSELTQADEKDLPHV-----------GVMLTHKGLVT 191
+ +V+I D+ +G LH + DL +V G ML HKG+
Sbjct: 154 QFNGQVEIFEEDTIKIREGTNLHVP----SKSTDLAYVIYTSGTTGNPKGTMLEHKGISN 209
Query: 192 SVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEINSLLQ 251
+V EN +L T++D I + ++ M L GA++ I+ K IN ++
Sbjct: 210 L---KVFFEN-SLNVTEKDRIGQFASISFDASVWE-MFMALLTGASLYIILKDTINDFVK 264
Query: 252 LIERYKXXXXXXXXXXXXXXXKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAI 311
E+Y + E+ + SI+ L + + L + + K+
Sbjct: 265 F-EQYINQKEITVITLPPTYVVHLDPER--ILSIQTLITAGSATSPSLVNKWKEKVTYI- 320
Query: 312 LGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEI 371
YG TE + A KE + G ++N ++ IVD E + GE+
Sbjct: 321 --NAYGPTET-TICATTWVATKETIG-HSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGEL 375
Query: 372 CIRGDQIMTGYLNDPEATKS---------------TIDKEGWLHTGDIGYIDDNDELFIV 416
CI G+ + GY PE T T D+ WL G+I Y+
Sbjct: 376 CIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLG-------- 427
Query: 417 DRLKELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITE 476
R+ +K +G +V H I++ AV KD A+ V ++ I
Sbjct: 428 -RIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFV--SEKHIPL 484
Query: 477 DEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKEL 515
++++QF S+++ Y + +D +P +GKI RK+L
Sbjct: 485 EQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQL 523
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 8/165 (4%)
Query: 358 ETGASLPTNKPGEICIRGDQIMTGYLNDPEAT-KSTIDKEG-WLH-TGDIGYIDDNDELF 414
E G LP + GEI I G + GYL +PE T K+ EG W + TGD G+I D ++F
Sbjct: 334 EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQDG-QIF 392
Query: 415 IVDRLKELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQI 474
RL IK G+++ + A V+P + + E +A +V
Sbjct: 393 CQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFE 452
Query: 475 TEDEIKQFISKQVV----FYKRINRVFFIDAIPKAPSGKILRKEL 515
E ++ I K++ Y + + D I +GKI RK +
Sbjct: 453 KEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRI 497
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 103/491 (20%), Positives = 180/491 (36%), Gaps = 57/491 (11%)
Query: 58 DVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPF 117
D TYG + A ++A L LG+ ++ + L + V + L G T +P
Sbjct: 99 DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQ 158
Query: 118 FTPAETCKQAKASGAKLIITKASYVDKVKDLEEVKI---MCIDSP---------PD--GC 163
F + +GA L++T ++ + + D+P P+ C
Sbjct: 159 FPVERLALSLEDTGAPLLVTSRPLSGRLTGTTTLYVEDEAASDAPAGNLATGVGPEDVAC 218
Query: 164 LHFSELTQADEKDLPHVGVMLTHKGLV-TSVAQQVDGENPNLYFTKEDAILCVLPLFHIY 222
+ F+ + K GVM H+ L T + Q G P+ F + C + +
Sbjct: 219 VMFTSGSTGRPK-----GVMSPHRALTGTYLGQDYAGFGPDEVFLQ-----CSPVSWDAF 268
Query: 223 ALNSIMLCGLRAGAAILIM--QKFEINSLLQLIERYKXXXXXXXXXXXX-XXXKSPETEK 279
L + L GA ++ Q + + +L+ R+ + PE
Sbjct: 269 GLE--LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEA-- 324
Query: 280 YDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEA------GPVLAMCLSFAK 333
+R +G P R P LG GYG E+ V+A LS
Sbjct: 325 --FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTA 382
Query: 334 EPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTI 393
P + V + ++K P +L GE+ + G + GY++ P T
Sbjct: 383 LPIGVPLAGKRAYVLDDDLK---PAANGAL-----GELYVAGAGLAHGYVSRPALTAERF 434
Query: 394 --------DKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSI 445
E TGD+ + L V R + +K +GF+V P H ++
Sbjct: 435 VADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAV 494
Query: 446 TDAAVVPMKDDAAGEVPVAFVVKSN-DSQITEDEIKQFISKQVVFYKRINRVFFIDAIPK 504
AAV+ + VA+VV D+ E+++ +++ + Y +D +P+
Sbjct: 495 RQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPR 554
Query: 505 APSGKILRKEL 515
P+GK+ R+ L
Sbjct: 555 TPNGKLDRRAL 565
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 114/262 (43%), Gaps = 23/262 (8%)
Query: 278 EKYDLSSIRILKSGAAPLGKELEDAV--RIKLPNAILGQGYGMTEAGPVLAMCLSFAKEP 335
E D SS+RIL S P+ E + +I + + TE G + L A
Sbjct: 373 EGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA--- 429
Query: 336 FEIKAGACGTVVRNAEMKIVD----PETGAS-----LPTNKPGEICIRGDQIMTGYLNDP 386
E+KAG+ + +VD P+ GA+ + + PG+ + + G
Sbjct: 430 IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQA-----RTLFGDHERF 484
Query: 387 EATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSIT 446
E T + K + +GD D++ +I R+ +++ G ++ +H I
Sbjct: 485 EQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIA 543
Query: 447 DAAVVPMKDDAAGEVPVAFVVKSNDSQITED---EIKQFISKQVVFYKRINRVFFIDAIP 503
+AAVV + G+ A+V ++ + + + E++ ++ K++ + + + D++P
Sbjct: 544 EAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLP 603
Query: 504 KAPSGKILRKELRAKLAADYQN 525
K SGKI+R+ LR A D N
Sbjct: 604 KTRSGKIMRRILRKIAAGDTSN 625
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 61 TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTP 120
+Y E+ + A+ L LGI + DV+ + +P VPE + L + GA+ + F+P
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 121 AETCKQAKASGAKLIIT 137
+ S ++L+IT
Sbjct: 169 EAVAGRIIDSSSRLVIT 185
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 115/262 (43%), Gaps = 23/262 (8%)
Query: 278 EKYDLSSIRILKSGAAPLGKELEDAV--RIKLPNAILGQGYGMTEAGPVLAMCLSFAKEP 335
E D SS+RIL S P+ E + +I + + TE G + L A
Sbjct: 373 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA--- 429
Query: 336 FEIKAGACGTVVRNAEMKIVD----PETGAS-----LPTNKPGEICIRGDQIMTGYLNDP 386
E+KAG+ + +VD P+ GA+ + + PG+ + + G
Sbjct: 430 IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQA-----RTLFGDHERF 484
Query: 387 EATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSIT 446
E T + K + +GD D++ +I R+ +++ G ++ +H I
Sbjct: 485 EQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIA 543
Query: 447 DAAVVPMKDDAAGEVPVAFVVKSNDSQITED---EIKQFISKQVVFYKRINRVFFIDAIP 503
+AAVV + G+ A+V ++ + + + E++ +++K++ + + + D++P
Sbjct: 544 EAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVAKEIGPLATPDVLHWTDSLP 603
Query: 504 KAPSGKILRKELRAKLAADYQN 525
K SGKI+R+ LR A D N
Sbjct: 604 KTRSGKIMRRILRKIAAGDTSN 625
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 61 TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTP 120
+Y E+ + A+ L LGI + DV+ + +P VPE + L + GA+ + F+P
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 121 AETCKQAKASGAKLIIT 137
+ S ++L+IT
Sbjct: 169 EAVAGRIIDSSSRLVIT 185
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 114/262 (43%), Gaps = 23/262 (8%)
Query: 278 EKYDLSSIRILKSGAAPLGKELEDAV--RIKLPNAILGQGYGMTEAGPVLAMCLSFAKEP 335
E D SS+RIL S P+ E + +I + + TE G + L A
Sbjct: 373 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA--- 429
Query: 336 FEIKAGACGTVVRNAEMKIVD----PETGAS-----LPTNKPGEICIRGDQIMTGYLNDP 386
E+KAG+ + +VD P+ GA+ + + PG+ + + G
Sbjct: 430 IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQA-----RTLFGDHERF 484
Query: 387 EATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSIT 446
E T + K + +GD D++ +I R+ +++ G ++ +H I
Sbjct: 485 EQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIA 543
Query: 447 DAAVVPMKDDAAGEVPVAFVVKSNDSQITED---EIKQFISKQVVFYKRINRVFFIDAIP 503
+AAVV + G+ A+V ++ + + + E++ ++ K++ + + + D++P
Sbjct: 544 EAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVEKEIGPLATPDVLHWTDSLP 603
Query: 504 KAPSGKILRKELRAKLAADYQN 525
K SGKI+R+ LR A D N
Sbjct: 604 KTRSGKIMRRILRKIAAGDTSN 625
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 61 TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTP 120
+Y E+ + A+ L LGI + DV+ + +P VPE + L + GA+ + F+P
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 121 AETCKQAKASGAKLIIT 137
+ S ++L+IT
Sbjct: 169 EAVAGRIIDSSSRLVIT 185
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 114/262 (43%), Gaps = 23/262 (8%)
Query: 278 EKYDLSSIRILKSGAAPLGKELEDAV--RIKLPNAILGQGYGMTEAGPVLAMCLSFAKEP 335
E D SS+RIL S P+ E + +I + + TE G + L A
Sbjct: 373 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA--- 429
Query: 336 FEIKAGACGTVVRNAEMKIVD----PETGAS-----LPTNKPGEICIRGDQIMTGYLNDP 386
E+KAG+ + +VD P+ GA+ + + PG+ + + G
Sbjct: 430 IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQA-----RTLFGDHERF 484
Query: 387 EATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSIT 446
E T + K + +GD D++ +I R+ +++ G ++ +H I
Sbjct: 485 EQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIA 543
Query: 447 DAAVVPMKDDAAGEVPVAFVVKSNDSQITED---EIKQFISKQVVFYKRINRVFFIDAIP 503
+AAVV + G+ A+V ++ + + + E++ ++ K++ + + + D++P
Sbjct: 544 EAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLP 603
Query: 504 KAPSGKILRKELRAKLAADYQN 525
K SGKI+R+ LR A D N
Sbjct: 604 KTRSGKIMRRILRKIAAGDTSN 625
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 61 TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTP 120
+Y E+ + A+ L LGI + DV+ + +P VPE + L + GA+ + F+P
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 121 AETCKQAKASGAKLIIT 137
+ S ++L+IT
Sbjct: 169 EAVAGRIIDSSSRLVIT 185
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 114/262 (43%), Gaps = 23/262 (8%)
Query: 278 EKYDLSSIRILKSGAAPLGKELEDAV--RIKLPNAILGQGYGMTEAGPVLAMCLSFAKEP 335
E D SS+RIL S P+ E + +I + + TE G + L A
Sbjct: 373 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA--- 429
Query: 336 FEIKAGACGTVVRNAEMKIVD----PETGAS-----LPTNKPGEICIRGDQIMTGYLNDP 386
E+KAG+ + +VD P+ GA+ + + PG+ + + G
Sbjct: 430 IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQA-----RTLFGDHERF 484
Query: 387 EATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSIT 446
E T + K + +GD D++ +I R+ +++ G ++ +H I
Sbjct: 485 EQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIA 543
Query: 447 DAAVVPMKDDAAGEVPVAFVVKSNDSQITED---EIKQFISKQVVFYKRINRVFFIDAIP 503
+AAVV + G+ A+V ++ + + + E++ ++ K++ + + + D++P
Sbjct: 544 EAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLP 603
Query: 504 KAPSGKILRKELRAKLAADYQN 525
K SGKI+R+ LR A D N
Sbjct: 604 KTRSGKIMRRILRKIAAGDTSN 625
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 61 TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTP 120
+Y E+ + A+ L LGI + DV+ + +P VPE + L + GA+ + F+P
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 121 AETCKQAKASGAKLIIT 137
+ S ++L+IT
Sbjct: 169 EAVAGRIIDSSSRLVIT 185
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 114/262 (43%), Gaps = 23/262 (8%)
Query: 278 EKYDLSSIRILKSGAAPLGKELEDAV--RIKLPNAILGQGYGMTEAGPVLAMCLSFAKEP 335
E D SS+RIL S P+ E + +I + + TE G + L A
Sbjct: 373 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA--- 429
Query: 336 FEIKAGACGTVVRNAEMKIVD----PETGAS-----LPTNKPGEICIRGDQIMTGYLNDP 386
E+KAG+ + +VD P+ GA+ + + PG+ + + G
Sbjct: 430 IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQA-----RTLFGDHERF 484
Query: 387 EATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSIT 446
E T + K + +GD D++ +I R+ +++ G ++ +H I
Sbjct: 485 EQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIA 543
Query: 447 DAAVVPMKDDAAGEVPVAFVVKSNDSQITED---EIKQFISKQVVFYKRINRVFFIDAIP 503
+AAVV + G+ A+V ++ + + + E++ ++ K++ + + + D++P
Sbjct: 544 EAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLP 603
Query: 504 KAPSGKILRKELRAKLAADYQN 525
K SGKI+R+ LR A D N
Sbjct: 604 KTRSGKIMRRILRKIAAGDTSN 625
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 61 TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTP 120
+Y E+ + A+ L LGI + DV+ + +P VPE + L + GA+ + F+P
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 121 AETCKQAKASGAKLIIT 137
S ++L+IT
Sbjct: 169 EAVAGCIIDSSSRLVIT 185
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 113/262 (43%), Gaps = 23/262 (8%)
Query: 278 EKYDLSSIRILKSGAAPLGKELEDAV--RIKLPNAILGQGYGMTEAGPVLAMCLSFAKEP 335
E D SS+RIL S P+ E + +I + + TE G + L A
Sbjct: 373 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA--- 429
Query: 336 FEIKAGACGTVVRNAEMKIVD----PETGAS-----LPTNKPGEICIRGDQIMTGYLNDP 386
E+KAG+ + +VD P+ GA+ + + PG+ + + G
Sbjct: 430 IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQA-----RTLFGDHERF 484
Query: 387 EATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSIT 446
E T + K + +GD D++ +I R+ +++ G ++ +H I
Sbjct: 485 EQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIA 543
Query: 447 DAAVVPMKDDAAGEVPVAFVVKSNDSQITED---EIKQFISKQVVFYKRINRVFFIDAIP 503
+AAVV + G+ A+V ++ + + + E++ ++ K++ + + + D++P
Sbjct: 544 EAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLP 603
Query: 504 KAPSGKILRKELRAKLAADYQN 525
K SG I+R+ LR A D N
Sbjct: 604 KTRSGAIMRRILRKIAAGDTSN 625
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 61 TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTP 120
+Y E+ + A+ L LGI + DV+ + +P VPE + L + GA+ + F+P
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 121 AETCKQAKASGAKLIIT 137
+ S ++L+IT
Sbjct: 169 EAVAGRIIDSSSRLVIT 185
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 95/434 (21%), Positives = 155/434 (35%), Gaps = 89/434 (20%)
Query: 61 TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTP 120
T+ ++ +A L++ G D +++ P E+V +FLGA G IA P P
Sbjct: 60 TWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAV---PLSVP 115
Query: 121 AETCKQAKA------SGAKLIITKASYVDKV------------KDLEEVKIMCIDSPPDG 162
++ S I+T +S VD V + EV ++ +D+P
Sbjct: 116 QGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLDLDAPNGY 175
Query: 163 CLHFSE------LTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKED------ 210
E L GV+++H+ + + Q + G YF D
Sbjct: 176 TFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSG-----YFADTDGIPPPN 230
Query: 211 -AILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEINSLLQLIERYKXXXXXXXXXXXX 269
A++ LP +H L I +C G ++ S LQ R+
Sbjct: 231 SALVSWLPFYHDMGL-VIGICAPILGGYPAVLTS--PVSFLQRPARWMHLMASDFHAFSA 287
Query: 270 X----------XXKSPETEKYDLSSIRILKSG-----AAPLGKELEDAVRIKLPNAILGQ 314
+ DL +I + SG AA + + + R L ++
Sbjct: 288 APNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRP 347
Query: 315 GYGMTEAGPVLAM--------CLSFAKEPFEIK-----AGACGTVV------RNAEMKIV 355
Y + EA +A + F E AG T + R+ ++IV
Sbjct: 348 SYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIV 407
Query: 356 DPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTI----------DKEG-WLHTGDI 404
D +T P GEI + GD + GY P+ ++ T EG WL TGD
Sbjct: 408 DSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDS 467
Query: 405 GYIDDNDELFIVDR 418
G++ D ++FI+ R
Sbjct: 468 GFVTDG-KMFIIGR 480
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 97/434 (22%), Positives = 154/434 (35%), Gaps = 89/434 (20%)
Query: 61 TYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTP 120
T+ ++ +A L++ G D +++ P E+V +FLGA G IA P P
Sbjct: 60 TWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAV---PLSVP 115
Query: 121 AETCKQAKA------SGAKLIITKASYVDKV------------KDLEEVKIMCIDSPPDG 162
++ S I+T +S VD V + EV ++ +D+P
Sbjct: 116 QGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLDLDAPNGY 175
Query: 163 CLHFSE------LTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKED------ 210
E L GV+ +H+ + + Q G YF D
Sbjct: 176 TFKEDEYPSTAYLQYTSGSTRTPAGVVXSHQNVRVNFEQLXSG-----YFADTDGIPPPN 230
Query: 211 -AILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEINSLLQLIERYKXXXXXXXXXXXX 269
A++ LP +H L I +C G ++ S LQ R+
Sbjct: 231 SALVSWLPFYHDXGL-VIGICAPILGGYPAVLTS--PVSFLQRPARWXHLXASDFHAFSA 287
Query: 270 X----------XXKSPETEKYDLSSIRILKSG-----AAPLGKELEDAVRIKLPNAILGQ 314
+ DL +I + SG AA + + + R L ++
Sbjct: 288 APNFAFELAARRTTDDDXAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRP 347
Query: 315 GYGMTEAGPVLAM--------CLSFAKEPFEIK-----AGACGTVV------RNAEMKIV 355
YG+ EA +A + F E AG T + R+ ++IV
Sbjct: 348 SYGLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYXLPRSPIVRIV 407
Query: 356 DPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTID----------KEG-WLHTGDI 404
D +T P GEI + GD + GY P+ ++ T EG WL TGD
Sbjct: 408 DSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDS 467
Query: 405 GYIDDNDELFIVDR 418
G++ D + FI+ R
Sbjct: 468 GFVTDG-KXFIIGR 480
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/245 (20%), Positives = 93/245 (37%), Gaps = 15/245 (6%)
Query: 282 LSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAG 341
L +R L +G L ++ P L GYG TE C + E
Sbjct: 275 LGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTE-NTTFTCCHVVTDDDLEEDDI 333
Query: 342 ACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKST---IDKEGW 398
G + + ++D ++ GEI G + GY ND T+++ + G
Sbjct: 334 PIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGR 393
Query: 399 L----HTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMK 454
L TGD D+ L + R +K G+++ I D A++ +
Sbjct: 394 LLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRE 453
Query: 455 DDAAGEVPVAFVVKSNDSQITEDEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKE 514
+ ++ A+ K++ S Q + +Q+ ++R + ++A+P GK+ R
Sbjct: 454 RNGVKQLLCAWTGKADAS-------PQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAA 506
Query: 515 LRAKL 519
L +L
Sbjct: 507 LLRRL 511
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 354 IVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATK-STIDKEGWLHTGDIGYIDDNDE 412
++ P + + GE+ I G + GYLN P+A I+ TGDI D +
Sbjct: 360 VLAPGSNEHVKKGXAGELVIEGSLVANGYLNRPDAKGFCDINGRKXYRTGDIVRXDADSS 419
Query: 413 LFIVDRLKELIKYKG 427
+ + R E +K +G
Sbjct: 420 ILFLGRKDEQVKVRG 434
>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|D Chain D, Anthranilate Synthase From S. Marcescens
pdb|1I7S|B Chain B, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|D Chain D, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 193
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 126 QAKASGAKLIITKASY-----VDKVKDLEEVKIMCIDSPPD----GCLHFSELTQADEKD 176
Q +ASG +++I + +++++ +E+ +M P GC+ EL Q
Sbjct: 20 QLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCM--PELLQRLRGQ 77
Query: 177 LPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAI 212
LP +G+ L H+ +V + QV G+ + K AI
Sbjct: 78 LPIIGICLGHQAIVEAYGGQV-GQAGEILHGKASAI 112
>pdb|1VE2|A Chain A, Crystal Structure Of Uroporphyrin-Iii-C-Methyltransferase
From Thermus Thermophilus
pdb|1VE2|B Chain B, Crystal Structure Of Uroporphyrin-Iii-C-Methyltransferase
From Thermus Thermophilus
Length = 235
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 180 VGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIML 229
+G+ LTH+GL S A G +P L + D ++ ++PL + L +L
Sbjct: 125 LGLPLTHRGLARSFAVA-TGHDPALPLPRADTLVLLMPLHTLGGLKERLL 173
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 9/164 (5%)
Query: 358 ETGASLPTNKPGEICIRGDQIMTGYLNDPEATKS-----TIDKEG----WLHTGDIGYID 408
+ G + + GE+ + G Q+ GYL PE T T +K G + TGD+
Sbjct: 367 DDGRDVAPGETGELWLSGAQLAEGYLRRPELTAEKFPEVTDEKTGESVRYYRTGDLVSEL 426
Query: 409 DNDELFIVDRLKELIKYKGFQVAPXXXXXXXXSHSSITDAAVVPMKDDAAGEVPVAFVVK 468
+ R IK +G+++ H + DA V + V V
Sbjct: 427 PDGRFAYEGRADLQIKLRGYRIELSDIETAVRRHDDVVDAVVTVREFKPGDLRLVCAYVA 486
Query: 469 SNDSQITEDEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILR 512
S T E++ I + Y R + +P+ +GK+ R
Sbjct: 487 REGSATTARELRNHIKTLLPAYMHPARYLPLPGLPRTVNGKVDR 530
>pdb|3ED6|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
pdb|3ED6|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
pdb|3FG0|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|B Chain B, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|C Chain C, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|D Chain D, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|E Chain E, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|F Chain F, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|G Chain G, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|H Chain H, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
Length = 520
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 190 VTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEINSL 249
VT++A ++ G+NPN+ F D L V + ++ +C AG+ IL+ +
Sbjct: 273 VTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVC--SAGSRILVQNSIKDKFE 330
Query: 250 LQLIERYK 257
LI+R K
Sbjct: 331 QALIDRVK 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,176,471
Number of Sequences: 62578
Number of extensions: 572928
Number of successful extensions: 1376
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1188
Number of HSP's gapped (non-prelim): 97
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)