Query 042783
Match_columns 525
No_of_seqs 188 out of 1993
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 16:27:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 3.3E-83 1.1E-87 659.3 56.2 509 13-521 3-535 (536)
2 2d1s_A Luciferase, luciferin 4 100.0 5.2E-79 1.8E-83 628.9 53.7 504 13-524 6-546 (548)
3 4fuq_A Malonyl COA synthetase; 100.0 7.3E-78 2.5E-82 614.3 47.6 475 36-522 4-501 (503)
4 3rix_A Luciferase, luciferin 4 100.0 3.2E-78 1.1E-82 624.1 41.7 499 17-523 6-543 (550)
5 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.4E-77 4.9E-82 617.3 46.2 482 30-524 23-534 (539)
6 3tsy_A Fusion protein 4-coumar 100.0 3.6E-78 1.2E-82 663.3 44.4 509 15-523 44-584 (979)
7 3g7s_A Long-chain-fatty-acid-- 100.0 1.2E-77 4E-82 619.8 44.9 494 21-524 9-545 (549)
8 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.2E-76 4E-81 606.2 51.4 474 32-520 2-503 (504)
9 3r44_A Fatty acyl COA syntheta 100.0 1.4E-77 4.7E-82 614.3 44.0 487 24-524 8-516 (517)
10 3fce_A D-alanine--poly(phospho 100.0 1.1E-76 3.7E-81 608.0 41.9 481 32-524 1-507 (512)
11 3etc_A AMP-binding protein; ad 100.0 1.1E-75 3.7E-80 606.9 49.3 481 28-521 51-579 (580)
12 3o83_A Peptide arylation enzym 100.0 1.7E-77 5.7E-82 617.6 34.9 483 28-523 26-542 (544)
13 3e7w_A D-alanine--poly(phospho 100.0 3.1E-75 1.1E-79 596.7 47.9 483 32-524 1-506 (511)
14 1v25_A Long-chain-fatty-acid-C 100.0 1.5E-76 5.1E-81 610.0 38.3 487 31-524 17-539 (541)
15 1amu_A GRSA, gramicidin synthe 100.0 2.7E-75 9.1E-80 602.3 46.6 484 15-519 22-527 (563)
16 3ivr_A Putative long-chain-fat 100.0 7.7E-76 2.6E-80 601.3 38.6 475 30-524 4-504 (509)
17 3l8c_A D-alanine--poly(phospho 100.0 6.7E-75 2.3E-79 596.4 44.9 484 31-523 3-514 (521)
18 1pg4_A Acetyl-COA synthetase; 100.0 3E-74 1E-78 604.3 48.2 483 33-522 77-622 (652)
19 3rg2_A Enterobactin synthase c 100.0 5.7E-74 2E-78 599.7 49.7 480 27-522 22-535 (617)
20 4gr5_A Non-ribosomal peptide s 100.0 1E-75 3.5E-80 607.6 36.0 475 28-518 71-568 (570)
21 3c5e_A Acyl-coenzyme A synthet 100.0 1.2E-73 4.3E-78 590.7 50.4 482 27-522 32-563 (570)
22 4dg8_A PA1221; ANL superfamily 100.0 5.2E-75 1.8E-79 604.8 39.2 476 24-522 19-514 (620)
23 2v7b_A Benzoate-coenzyme A lig 100.0 2.5E-73 8.5E-78 585.5 50.2 475 28-518 19-529 (529)
24 1ry2_A Acetyl-coenzyme A synth 100.0 3.4E-73 1.2E-77 596.3 46.3 485 33-522 83-638 (663)
25 3ipl_A 2-succinylbenzoate--COA 100.0 3.8E-73 1.3E-77 580.5 41.2 465 32-524 1-500 (501)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 7.4E-74 2.5E-78 584.5 34.5 467 31-517 21-504 (505)
27 2vsq_A Surfactin synthetase su 100.0 1.2E-70 4E-75 618.2 46.1 488 16-519 449-958 (1304)
28 3kxw_A Saframycin MX1 syntheta 100.0 7.5E-71 2.6E-75 575.5 35.6 488 28-523 7-569 (590)
29 3ite_A SIDN siderophore synthe 100.0 7.3E-71 2.5E-75 571.4 34.8 487 25-522 13-544 (562)
30 3gqw_A Fatty acid AMP ligase; 100.0 3E-69 1E-73 562.2 41.0 491 26-524 15-566 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 8.7E-56 3E-60 450.3 30.2 381 30-418 22-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 3.6E-50 1.2E-54 390.3 21.3 312 168-523 41-356 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 4.1E-46 1.4E-50 373.5 23.7 323 167-513 89-429 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 7.8E-46 2.7E-50 372.3 17.4 328 166-516 94-439 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 7.2E-45 2.5E-49 364.6 21.5 325 166-514 92-432 (437)
36 3hgu_A EHPF; phenazine, antibi 99.9 1.1E-26 3.9E-31 227.0 17.5 235 167-428 94-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.6 2.9E-15 9.9E-20 117.7 7.9 95 417-512 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.6 2.9E-15 1E-19 117.4 7.1 95 417-513 1-102 (109)
39 4b2g_A GH3-1 auxin conjugating 98.3 4.1E-06 1.4E-10 84.2 12.6 133 282-441 301-458 (609)
40 4eql_A 4-substituted benzoates 98.2 1.1E-05 3.7E-10 81.0 12.9 134 282-442 296-447 (581)
41 4epl_A Jasmonic acid-amido syn 98.2 1.8E-05 6.3E-10 79.2 13.8 145 282-452 301-472 (581)
42 2y27_A Phenylacetate-coenzyme 92.5 0.82 2.8E-05 44.6 11.4 88 58-146 108-197 (437)
43 2y4o_A Phenylacetate-coenzyme 92.5 1.1 3.9E-05 43.7 12.4 88 58-146 110-199 (443)
44 3qov_A Phenylacetate-coenzyme 92.0 0.95 3.3E-05 44.1 11.0 88 58-146 104-193 (436)
45 3ipl_A 2-succinylbenzoate--COA 84.6 8.5 0.00029 38.1 12.3 99 45-147 161-267 (501)
46 3hgu_A EHPF; phenazine, antibi 81.7 4.7 0.00016 38.0 8.7 87 58-146 109-220 (369)
47 1mdb_A 2,3-dihydroxybenzoate-A 80.2 16 0.00054 36.5 12.4 98 45-146 180-287 (539)
48 3g7s_A Long-chain-fatty-acid-- 78.8 5.2 0.00018 40.2 8.3 87 182-271 51-138 (549)
49 1v25_A Long-chain-fatty-acid-C 78.3 6.4 0.00022 39.4 8.8 88 181-271 45-133 (541)
50 2d1s_A Luciferase, luciferin 4 78.3 9.3 0.00032 38.3 9.9 99 47-147 192-299 (548)
51 3o83_A Peptide arylation enzym 77.8 18 0.0006 36.2 11.8 98 45-146 189-296 (544)
52 3c5e_A Acyl-coenzyme A synthet 77.3 7.5 0.00026 39.3 8.9 89 181-271 71-160 (570)
53 2v7b_A Benzoate-coenzyme A lig 77.2 5.7 0.0002 39.7 8.0 84 183-269 48-132 (529)
54 3rix_A Luciferase, luciferin 4 76.4 4.9 0.00017 40.4 7.3 88 181-271 48-136 (550)
55 3ni2_A 4-coumarate:COA ligase; 76.3 5.8 0.0002 39.7 7.8 87 181-270 47-134 (536)
56 3r44_A Fatty acyl COA syntheta 75.9 7.9 0.00027 38.5 8.6 84 182-268 42-126 (517)
57 3ivr_A Putative long-chain-fat 75.9 6.8 0.00023 38.9 8.1 87 181-270 29-116 (509)
58 4gs5_A Acyl-COA synthetase (AM 75.8 5.3 0.00018 37.6 6.9 95 46-146 36-138 (358)
59 1t5h_X 4-chlorobenzoyl COA lig 74.1 9.5 0.00032 37.8 8.6 88 181-271 27-117 (504)
60 3fce_A D-alanine--poly(phospho 74.0 12 0.00042 37.0 9.5 99 45-146 142-250 (512)
61 4fuq_A Malonyl COA synthetase; 72.6 9.5 0.00033 37.7 8.2 83 181-266 26-109 (503)
62 1amu_A GRSA, gramicidin synthe 71.9 9.9 0.00034 38.3 8.2 87 182-271 63-150 (563)
63 3etc_A AMP-binding protein; ad 70.1 11 0.00039 38.0 8.2 82 181-265 84-166 (580)
64 3e7w_A D-alanine--poly(phospho 70.0 18 0.00061 35.8 9.5 99 45-146 141-249 (511)
65 3rg2_A Enterobactin synthase c 68.6 46 0.0016 33.7 12.5 97 45-145 182-288 (617)
66 1ry2_A Acetyl-coenzyme A synth 67.6 12 0.00042 38.5 8.0 84 181-266 111-195 (663)
67 1pg4_A Acetyl-COA synthetase; 67.4 12 0.0004 38.6 7.7 82 181-265 105-187 (652)
68 4gr5_A Non-ribosomal peptide s 67.2 13 0.00044 37.5 7.9 82 183-267 100-182 (570)
69 3l8c_A D-alanine--poly(phospho 65.1 14 0.00047 36.7 7.5 82 181-265 27-109 (521)
70 3kxw_A Saframycin MX1 syntheta 62.7 24 0.00081 35.6 8.9 89 181-272 38-130 (590)
71 3gqw_A Fatty acid AMP ligase; 61.8 22 0.00076 35.6 8.5 88 181-271 47-142 (576)
72 3t5a_A Long-chain-fatty-acid-- 60.2 28 0.00095 33.9 8.7 89 182-274 57-149 (480)
73 3tsy_A Fusion protein 4-coumar 59.4 20 0.00069 38.9 8.1 85 181-268 86-171 (979)
74 3ezx_A MMCP 1, monomethylamine 55.2 58 0.002 27.8 8.7 92 210-303 93-195 (215)
75 3nyq_A Malonyl-COA ligase; A/B 51.9 85 0.0029 30.8 10.7 97 45-146 153-258 (505)
76 4dg8_A PA1221; ANL superfamily 51.6 29 0.001 35.3 7.3 79 183-264 52-131 (620)
77 3tbh_A O-acetyl serine sulfhyd 51.4 55 0.0019 30.2 8.6 91 48-140 36-127 (334)
78 3ite_A SIDN siderophore synthe 48.3 41 0.0014 33.6 7.8 80 182-265 54-134 (562)
79 4eez_A Alcohol dehydrogenase 1 48.0 81 0.0028 29.0 9.3 78 59-139 136-216 (348)
80 3vc3_A Beta-cyanoalnine syntha 45.1 79 0.0027 29.3 8.6 81 58-139 61-141 (344)
81 1h2b_A Alcohol dehydrogenase; 37.5 1.2E+02 0.004 28.2 8.6 62 75-139 176-239 (359)
82 3s2e_A Zinc-containing alcohol 37.2 1.2E+02 0.0039 27.9 8.5 78 58-139 138-218 (340)
83 2vsq_A Surfactin synthetase su 35.4 69 0.0024 36.0 7.7 84 181-267 487-571 (1304)
84 3jv7_A ADH-A; dehydrogenase, n 33.6 1.3E+02 0.0043 27.7 8.1 77 60-139 143-224 (345)
85 2q3b_A Cysteine synthase A; py 32.6 1.9E+02 0.0064 26.1 9.0 79 59-140 43-122 (313)
86 3tqh_A Quinone oxidoreductase; 32.6 2.3E+02 0.0079 25.5 9.7 77 59-140 125-205 (321)
87 1z7w_A Cysteine synthase; tran 31.9 1.7E+02 0.0059 26.5 8.6 63 77-140 58-122 (322)
88 3ju7_A Putative PLP-dependent 31.8 1.1E+02 0.0038 28.5 7.5 61 75-138 69-136 (377)
89 4aec_A Cysteine synthase, mito 30.3 1.8E+02 0.0062 27.8 8.6 63 77-139 166-229 (430)
90 2egu_A Cysteine synthase; O-ac 29.5 2E+02 0.007 25.8 8.6 79 59-140 41-120 (308)
91 3two_A Mannitol dehydrogenase; 29.5 1.4E+02 0.0049 27.3 7.8 74 59-136 149-225 (348)
92 3fpc_A NADP-dependent alcohol 28.8 1.2E+02 0.0042 27.9 7.2 60 75-138 158-218 (352)
93 4h1h_A LMO1638 protein; MCCF-l 28.6 2.1E+02 0.0072 26.1 8.5 60 80-139 8-86 (327)
94 1ve1_A O-acetylserine sulfhydr 28.2 2.9E+02 0.0099 24.7 9.4 64 76-140 51-117 (304)
95 3sr3_A Microcin immunity prote 27.8 2.2E+02 0.0076 26.1 8.5 60 80-139 9-87 (336)
96 4ej6_A Putative zinc-binding d 27.7 1.6E+02 0.0055 27.4 7.8 58 76-137 175-233 (370)
97 2pqm_A Cysteine synthase; OASS 27.5 2.2E+02 0.0074 26.2 8.5 90 48-140 43-133 (343)
98 4a2c_A Galactitol-1-phosphate 27.0 2.3E+02 0.008 25.7 8.7 63 74-139 151-213 (346)
99 2cf5_A Atccad5, CAD, cinnamyl 26.7 2E+02 0.007 26.4 8.3 63 75-140 171-234 (357)
100 2v03_A Cysteine synthase B; py 26.7 3.1E+02 0.011 24.5 9.3 62 77-139 53-115 (303)
101 1o69_A Aminotransferase; struc 25.3 2.8E+02 0.0095 25.7 9.1 61 76-139 64-130 (394)
102 3tla_A MCCF; serine protease, 25.1 2.4E+02 0.0081 26.4 8.2 60 80-139 39-117 (371)
103 2cvi_A 75AA long hypothetical 25.0 1.7E+02 0.0057 20.0 7.1 49 432-490 15-63 (83)
104 2jtq_A Phage shock protein E; 24.9 1.4E+02 0.0049 20.3 5.3 32 78-109 35-66 (85)
105 1zsy_A Mitochondrial 2-enoyl t 24.5 2.4E+02 0.0081 25.9 8.3 62 76-138 159-223 (357)
106 1uuf_A YAHK, zinc-type alcohol 24.3 1.5E+02 0.0053 27.5 6.9 62 74-139 185-246 (369)
107 4e5s_A MCCFLIKE protein (BA_56 24.2 2.7E+02 0.0092 25.5 8.3 60 80-139 8-86 (331)
108 1y80_A Predicted cobalamin bin 23.3 2.8E+02 0.0095 23.1 7.8 57 84-140 88-148 (210)
109 1yqd_A Sinapyl alcohol dehydro 23.2 3.3E+02 0.011 25.1 9.0 63 75-140 178-241 (366)
110 1pl8_A Human sorbitol dehydrog 22.8 2.4E+02 0.0081 25.9 7.9 58 76-137 164-222 (356)
111 3ist_A Glutamate racemase; str 22.7 2.2E+02 0.0074 25.2 7.1 57 38-98 21-81 (269)
112 4e4g_A Methylmalonate-semialde 22.4 2.3E+02 0.008 27.9 8.0 67 208-274 162-238 (521)
113 3pc3_A CG1753, isoform A; CBS, 21.9 2.7E+02 0.0092 27.4 8.4 61 78-139 106-167 (527)
114 3ip1_A Alcohol dehydrogenase, 21.7 2.2E+02 0.0074 26.8 7.5 55 80-138 210-265 (404)
115 3r31_A BADH, betaine aldehyde 21.5 3.2E+02 0.011 26.8 8.8 49 208-256 150-203 (517)
116 3dwg_A Cysteine synthase B; su 21.3 3.4E+02 0.012 24.6 8.4 63 77-140 65-128 (325)
117 2zbc_A 83AA long hypothetical 21.2 2E+02 0.0067 19.4 6.3 49 432-490 15-63 (83)
118 1kol_A Formaldehyde dehydrogen 21.2 2.4E+02 0.0082 26.4 7.7 56 76-135 178-234 (398)
119 2h6e_A ADH-4, D-arabinose 1-de 21.0 2.5E+02 0.0085 25.6 7.6 54 80-137 168-222 (344)
120 1rjw_A ADH-HT, alcohol dehydro 21.0 3E+02 0.01 24.9 8.2 58 76-137 157-214 (339)
121 2duw_A Putative COA-binding pr 20.7 1.6E+02 0.0056 23.0 5.4 51 84-135 71-121 (145)
122 1f8f_A Benzyl alcohol dehydrog 20.7 3.4E+02 0.012 25.0 8.6 58 77-138 184-242 (371)
123 1uxt_A Glyceraldehyde-3-phosph 20.6 4.7E+02 0.016 25.5 9.8 49 208-256 157-210 (501)
124 3a2k_A TRNA(Ile)-lysidine synt 20.2 3.5E+02 0.012 26.1 8.7 69 71-139 4-86 (464)
125 2ve5_A BADH, betaine aldehyde 20.2 4.2E+02 0.014 25.7 9.3 49 208-256 142-195 (490)
126 2e7j_A SEP-tRNA:Cys-tRNA synth 20.0 4.3E+02 0.015 23.9 9.2 46 81-129 90-141 (371)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=3.3e-83 Score=659.27 Aligned_cols=509 Identities=76% Similarity=1.196 Sum_probs=458.0
Q ss_pred cccceeeccCCCCCCCCCCCCHHHHHHhhhccCCCccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
Q 042783 13 QQEEIIFRSKLPDIYIPKHLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLP 92 (525)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~ 92 (525)
++++.++.++.++..+|.++|+.++|.++++++|+++|+++.++++++||+||.++++++|++|.++|+++||+|+++++
T Consensus 3 ~~~~~i~~~~~~~~~~p~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~ 82 (536)
T 3ni2_A 3 PQEEFIFRSKLPDIYIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLP 82 (536)
T ss_dssp --CCCCBCCSSCCCCCCSSCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred cccceEEecCCCCCCCCCCCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Confidence 45678999999999999999999999999999999999999766799999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECccchHHHhcc---cCcEEEEecCCCC--------
Q 042783 93 NVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDL---EEVKIMCIDSPPD-------- 161 (525)
Q Consensus 93 ~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~---~~~~~~~~~~~~~-------- 161 (525)
|+++++++++||+++|++++|+++.++.+++.+++++++++++|++......+... ....++.++....
T Consensus 83 ~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (536)
T 3ni2_A 83 SSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSEL 162 (536)
T ss_dssp SSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETHHH
T ss_pred CcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHHHH
Confidence 99999999999999999999999999999999999999999999998766554432 1334444432110
Q ss_pred -------------CCcccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHH
Q 042783 162 -------------GCLHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIM 228 (525)
Q Consensus 162 -------------~~~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 228 (525)
...+...+..++++++.||||++||+++.+.+..........+++.++|++++.+|++|.+++...+
T Consensus 163 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 242 (536)
T 3ni2_A 163 TQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIM 242 (536)
T ss_dssp HTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTH
T ss_pred hhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHH
Confidence 1123345667788889999999999999998877665444456788999999999999999997778
Q ss_pred HHHHHhCCeEEEecCCCHHHHHHHHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHCC
Q 042783 229 LCGLRAGAAILIMQKFEINSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLP 308 (525)
Q Consensus 229 ~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~ 308 (525)
+.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.......++++||.+++||+++++++.+++++.+|
T Consensus 243 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 322 (536)
T 3ni2_A 243 LCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFP 322 (536)
T ss_dssp HHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCT
T ss_pred HHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999988777778999999999999999999999999999
Q ss_pred CCeeeccccccccccchhcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhh
Q 042783 309 NAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEA 388 (525)
Q Consensus 309 ~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~ 388 (525)
++++++.||+||++.+++.+............+++|+|+++++++|+|++++++++.|+.|||+|+|+.++.||+++++.
T Consensus 323 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~ 402 (536)
T 3ni2_A 323 QARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEA 402 (536)
T ss_dssp TSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHH
T ss_pred CCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhH
Confidence 99999999999999877655433344455678899999999999999988999999999999999999999999999999
Q ss_pred hhcccCCCCceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEe
Q 042783 389 TKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVK 468 (525)
Q Consensus 389 ~~~~~~~~~~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 468 (525)
|...|+.+|||+|||+|++++||++++.||+||+||++|++|+|.+||++|.+||+|.+++|++++++..++.++++|+.
T Consensus 403 t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~ 482 (536)
T 3ni2_A 403 TSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVK 482 (536)
T ss_dssp HHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred HHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEe
Confidence 99999889999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCccEEEEeccCCCCCCCcccHHHHHHHHHh
Q 042783 469 SNDSQITEDEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAA 521 (525)
Q Consensus 469 ~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~ 521 (525)
.++...+.++++++++++|+.|++|..++++++||+|++||++|++|+++|++
T Consensus 483 ~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 483 SEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp CTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred cCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 88888899999999999999999999999999999999999999999998864
No 2
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=5.2e-79 Score=628.86 Aligned_cols=504 Identities=33% Similarity=0.490 Sum_probs=442.4
Q ss_pred cccceeeccCCCCCCCCCCCCHHH-HHHhhhccCCCccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
Q 042783 13 QQEEIIFRSKLPDIYIPKHLPLHS-YCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLL 91 (525)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~ 91 (525)
..++..+.+..+....|...|+.+ .+.++++++ +++|+++...++++||+||+++++++|++|.++|+++||+|++++
T Consensus 6 ~~~~~~~~~~~~~~~~p~~~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~ 84 (548)
T 2d1s_A 6 NDENIVVGPKPFYPIEEGSAGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCS 84 (548)
T ss_dssp -CTTSEECCCCSSCCCSSCHHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred CCcceEecCCCCCCCCCCcCcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEe
Confidence 344556667766667777789999 899999999 999999854478999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECccchHHHhcc----c-CcEEEEecCC-------
Q 042783 92 PNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDL----E-EVKIMCIDSP------- 159 (525)
Q Consensus 92 ~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~----~-~~~~~~~~~~------- 159 (525)
+|+++++++++||+++|++++|+++.++.+++.+++++++++++|++......+... + ...++.++..
T Consensus 85 ~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (548)
T 2d1s_A 85 ENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQ 164 (548)
T ss_dssp SSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBC
T ss_pred CCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccc
Confidence 999999999999999999999999999999999999999999999998766544331 1 1233333221
Q ss_pred -------------CC----C-----C-cccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEec
Q 042783 160 -------------PD----G-----C-LHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVL 216 (525)
Q Consensus 160 -------------~~----~-----~-~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~ 216 (525)
.. . . .+...+..++++++.||||++||+++.+.+........ .++++++|++++.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-~~~~~~~d~~l~~~ 243 (548)
T 2d1s_A 165 CLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY-GNQVSPGTAVLTVV 243 (548)
T ss_dssp BHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT-SCCCCTTCEEEECS
T ss_pred cHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh-ccCCCccceEEEec
Confidence 00 0 1 22334566788889999999999999988877655321 25678999999999
Q ss_pred chhhHHHHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCc
Q 042783 217 PLFHIYALNSIMLCGLRAGAAILIMQKFEINSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLG 296 (525)
Q Consensus 217 pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~ 296 (525)
|++|.+++...++.++ .|+++++.+.+++..+++.++++++|+++++|+++..|.+.......++++||.+++||++++
T Consensus 244 p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~ 322 (548)
T 2d1s_A 244 PFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLS 322 (548)
T ss_dssp CTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCC
T ss_pred cHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCC
Confidence 9999999955577777 999999999999999999999999999999999999999887666667899999999999999
Q ss_pred HHHHHHHHHHCCCCeeeccccccccccchhcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecc
Q 042783 297 KELEDAVRIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGD 376 (525)
Q Consensus 297 ~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~ 376 (525)
+++.+++.+.++++.+++.||+||++..++.. .......+++|+|+|+++++|+|++++++++.|+.|||+++|+
T Consensus 323 ~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~-----~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~ 397 (548)
T 2d1s_A 323 KEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-----PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397 (548)
T ss_dssp HHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC-----CTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEEST
T ss_pred HHHHHHHHHHcCCCceeeccccccccceeeec-----CcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCH
Confidence 99999999999889999999999998766543 1223467899999999999999988999999999999999999
Q ss_pred cccccccCChhhhhcccCCCCceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCC
Q 042783 377 QIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDD 456 (525)
Q Consensus 377 ~~~~gy~~~~~~~~~~~~~~~~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 456 (525)
.++.||+++++.|...|+.+|||+|||+|++++||++++.||+||+||++|++|+|.+||++|.+||+|.+++|++++++
T Consensus 398 ~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~ 477 (548)
T 2d1s_A 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDP 477 (548)
T ss_dssp TSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEET
T ss_pred HHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcC
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCeEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcc-EEEEeccCCCCCCCcccHHHHHHHHHhhhc
Q 042783 457 AAGEVPVAFVVKSNDSQITEDEIKQFISKQVVFYKRIN-RVFFIDAIPKAPSGKILRKELRAKLAADYQ 524 (525)
Q Consensus 457 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~i~~~~~~P~t~~GKv~r~~l~~~~~~~~~ 524 (525)
..|+.++++|++.++...+.++++++++++|+.|++|. .++++++||+|++||++|++|+++|++.++
T Consensus 478 ~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~ 546 (548)
T 2d1s_A 478 VAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVA 546 (548)
T ss_dssp TTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC-
T ss_pred CCCeeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhhh
Confidence 88899999999887777889999999999999999999 999999999999999999999999988765
No 3
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=7.3e-78 Score=614.25 Aligned_cols=475 Identities=24% Similarity=0.366 Sum_probs=421.9
Q ss_pred HHHHhhhccCCCccEEEe-CCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCCeEeec
Q 042783 36 SYCFENISKVASRPCLIN-GSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAA 114 (525)
Q Consensus 36 ~~l~~~a~~~p~~~a~~~-~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 114 (525)
++|.++++++|+++++.. ..+++++||+||+++++++|++|.++|+++||+|+++++|+++++++++||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 467888999999998874 1237899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCccEEEECccchHHHhcc---cCcEEEEecCC-------------------CCCCccccccccc
Q 042783 115 NPFFTPAETCKQAKASGAKLIITKASYVDKVKDL---EEVKIMCIDSP-------------------PDGCLHFSELTQA 172 (525)
Q Consensus 115 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~---~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 172 (525)
++.++.+++.+++++++++++|++......+... ....+..+... .....+...+..+
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~T 163 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYT 163 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCSCCCCCCCCTTSEEEEEEC
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCCCcCcCCCCCCCeEEEEEC
Confidence 9999999999999999999999997654432221 11223322211 1112334556778
Q ss_pred CCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecCCCHHHHHHH
Q 042783 173 DEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEINSLLQL 252 (525)
Q Consensus 173 ~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 252 (525)
+++++.||||++||+++.+.+..... .++++++|++++.+|++|.+|+...++.+++.|+++++.+.+++..+++.
T Consensus 164 SGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~ 239 (503)
T 4fuq_A 164 SGTTGRSKGAMLSHDNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDL 239 (503)
T ss_dssp C--CCSCCEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHH
T ss_pred CCcccCCeEEEEeHHHHHHHHHHHHH----HhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHH
Confidence 88899999999999999998887776 45588999999999999999986677889999999999999999999999
Q ss_pred HHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeeccccccccccchhcccccC
Q 042783 253 IERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAMCLSFA 332 (525)
Q Consensus 253 l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~ 332 (525)
++ ++|+++++|+++..+++........+++||.+++||+++++++.++|.+.+ ++++++.||+||++..++..
T Consensus 240 i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~---- 312 (503)
T 4fuq_A 240 MA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSNP---- 312 (503)
T ss_dssp HT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCCC----
T ss_pred Hh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCcccccC----
Confidence 98 899999999999999998877777789999999999999999999999988 89999999999998765422
Q ss_pred CCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhcccCCCCceecCceEEEcCCCc
Q 042783 333 KEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDE 412 (525)
Q Consensus 333 ~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TgDl~~~~~dg~ 412 (525)
.......+++|+|+++++++|+|++++++++.|+.|||+|+|+.++.||+++++.+...|..+|||+|||+|++++||+
T Consensus 313 -~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~ 391 (503)
T 4fuq_A 313 -YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGY 391 (503)
T ss_dssp -SSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCE
T ss_pred -CCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCc
Confidence 2334567889999999999999988999999999999999999999999999999999998899999999999999999
Q ss_pred EEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCC
Q 042783 413 LFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFISKQVVFYKR 492 (525)
Q Consensus 413 l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~ 492 (525)
+++.||+||+||++|++|+|.+||+.|.+||+|.+++|++++++..++.++++|+..++...+.++++++++++|+.|++
T Consensus 392 l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~ 471 (503)
T 4fuq_A 392 VHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKM 471 (503)
T ss_dssp EEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGC
T ss_pred EEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 99999999999999999999999999999999999999999999889999999999888888999999999999999999
Q ss_pred ccEEEEeccCCCCCCCcccHHHHHHHHHhh
Q 042783 493 INRVFFIDAIPKAPSGKILRKELRAKLAAD 522 (525)
Q Consensus 493 p~~i~~~~~~P~t~~GKv~r~~l~~~~~~~ 522 (525)
|..|+++++||+|++||++|++|+++|++.
T Consensus 472 P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 472 PKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp CSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred CCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 999999999999999999999999999764
No 4
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=3.2e-78 Score=624.10 Aligned_cols=499 Identities=33% Similarity=0.519 Sum_probs=333.6
Q ss_pred eeeccCCCCCCCCCCCCHHHHHHhhhccCCCccEEE---eCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
Q 042783 17 IIFRSKLPDIYIPKHLPLHSYCFENISKVASRPCLI---NGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPN 93 (525)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~---~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~ 93 (525)
.++.++.+..+.+. .|+.+.|.++++++|+++|++ +...++++||+||+++++++|++|.++|+++||+|+++++|
T Consensus 6 ~~~~~~~~~~~~~~-~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n 84 (550)
T 3rix_A 6 NIKKGPAPFYPLED-GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN 84 (550)
T ss_dssp GSEECCCCSSCCCC-SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSS
T ss_pred ceeeCCCCCCCccc-CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCC
Confidence 34455555555555 899999999999999999975 54457899999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECccchHHHhcc----cCc-EEEEecCCC--------
Q 042783 94 VPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDL----EEV-KIMCIDSPP-------- 160 (525)
Q Consensus 94 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~----~~~-~~~~~~~~~-------- 160 (525)
++++++++|||+++|++++|+++.++.+++.++++.++++++|++......+... +.. .++.++...
T Consensus 85 ~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (550)
T 3rix_A 85 SLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSM 164 (550)
T ss_dssp CTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBH
T ss_pred cccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcccH
Confidence 9999999999999999999999999999999999999999999998776554332 212 223222110
Q ss_pred ----------------------CCCcccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecch
Q 042783 161 ----------------------DGCLHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPL 218 (525)
Q Consensus 161 ----------------------~~~~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 218 (525)
....+...+..++++++.||||++||+++...+........ .+++.+++++++.+|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~ 243 (550)
T 3rix_A 165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF-GNQIIPDTAILSVVPF 243 (550)
T ss_dssp HHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT-SCCCCTTCEEEECSCT
T ss_pred HHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhc-cccCCCCcEEEEechH
Confidence 00122345677788889999999999999988776655321 2457889999999999
Q ss_pred hhHHHHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHH
Q 042783 219 FHIYALNSIMLCGLRAGAAILIMQKFEINSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKE 298 (525)
Q Consensus 219 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~ 298 (525)
+|.+++ ..++.+++.|+++++.+.+++..+++.++++++|+++++|+++..|++.......++++||.+++||++++++
T Consensus 244 ~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~ 322 (550)
T 3rix_A 244 HHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKE 322 (550)
T ss_dssp TSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHH
T ss_pred HHHHHH-HHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHH
Confidence 999998 6788899999999999999999999999999999999999999999998877777889999999999999999
Q ss_pred HHHHHHHHCCCCeeeccccccccccchhcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccc
Q 042783 299 LEDAVRIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQI 378 (525)
Q Consensus 299 ~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~ 378 (525)
+.+++.+.++...+++.||+||++..++.. .......+++|+|+|+++++|+|++++++++.|+.|||+|+|+.+
T Consensus 323 ~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~-----~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v 397 (550)
T 3rix_A 323 VGEAVAKRFHLPGIRQGYGLTETTSAILIT-----PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMI 397 (550)
T ss_dssp HHHHHHHHTTCSCCEEEEECGGGSSEEEEC-----CTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTS
T ss_pred HHHHHHHHcCCCccccccCcCccccceecC-----CCCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCc
Confidence 999999999545699999999999777654 223456789999999999999998889999999999999999999
Q ss_pred cccccCChhhhhcccCCCCceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCC
Q 042783 379 MTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAA 458 (525)
Q Consensus 379 ~~gy~~~~~~~~~~~~~~~~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 458 (525)
+.||+++++.+...|+.+|||+|||+|++++||++++.||+||+||++|++|+|.+||++|.+||+|.+++|++++++..
T Consensus 398 ~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~ 477 (550)
T 3rix_A 398 MSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDA 477 (550)
T ss_dssp CSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC------------------------------------------
T ss_pred chhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCC
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999989
Q ss_pred CCeEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcc-EEEEeccCCCCCCCcccHHHHHHHHHhhh
Q 042783 459 GEVPVAFVVKSNDSQITEDEIKQFISKQVVFYKRIN-RVFFIDAIPKAPSGKILRKELRAKLAADY 523 (525)
Q Consensus 459 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~i~~~~~~P~t~~GKv~r~~l~~~~~~~~ 523 (525)
++.++++|++.++...+.++++++++++++.++.|. .++++++||+|++||++|++|++++.+..
T Consensus 478 g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 543 (550)
T 3rix_A 478 GELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK 543 (550)
T ss_dssp ------------------------------------------------------------------
T ss_pred CceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhc
Confidence 999999999888777888999999999999886554 69999999999999999999999997654
No 5
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.4e-77 Score=617.35 Aligned_cols=482 Identities=25% Similarity=0.396 Sum_probs=421.1
Q ss_pred CCCCHHHHHHhhhccCCCccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCC
Q 042783 30 KHLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGA 109 (525)
Q Consensus 30 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 109 (525)
...|+.++|.++++++|+++|+++. ++++||+||+++++++|++|.++|+++||+|+++++|+++++++++||+++|+
T Consensus 23 ~~~tl~~~l~~~a~~~p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 100 (539)
T 1mdb_A 23 AGETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGA 100 (539)
T ss_dssp CSCCHHHHHHHHHHHHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHCCCCEEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCe
Confidence 3479999999999999999999987 78999999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCHHHHHHHHHHcCccEEEECccch--------HHH-hcccCcE-EEEecC------------C-----CCC
Q 042783 110 IATAANPFFTPAETCKQAKASGAKLIITKASYV--------DKV-KDLEEVK-IMCIDS------------P-----PDG 162 (525)
Q Consensus 110 ~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~--------~~~-~~~~~~~-~~~~~~------------~-----~~~ 162 (525)
+++|+++.++.+++.+++++++++++|+++... ..+ ...+... ++..+. . ...
T Consensus 101 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (539)
T 1mdb_A 101 LPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVK 180 (539)
T ss_dssp EEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCCCCCCCCCCC
T ss_pred EEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchhhhhhccccccccCCCC
Confidence 999999999999999999999999999987531 111 1112221 111111 0 011
Q ss_pred CcccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHH-HHHHHHHhCCeEEEe
Q 042783 163 CLHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNS-IMLCGLRAGAAILIM 241 (525)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~v~~ 241 (525)
..+...+..++++++.||||++||+++.+.+..... .++++++|++++.+|++|.+++.. .++.+++.|+++++.
T Consensus 181 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE----VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH----HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred cCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH----hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 123445667788899999999999999988877665 345789999999999999999854 689999999999999
Q ss_pred cCCCHHHHHHHHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeecccccccc
Q 042783 242 QKFEINSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEA 321 (525)
Q Consensus 242 ~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~yG~tE~ 321 (525)
+.+++..+++.++++++|++.++|+++..+++.......++++||.+++||+++++++.+++.+.+ ++.+++.||+||+
T Consensus 257 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~ 335 (539)
T 1mdb_A 257 PSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEG 335 (539)
T ss_dssp SSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTS
T ss_pred CCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCCCC
Confidence 999999999999999999999999999999876554556789999999999999999999999988 8999999999997
Q ss_pred ccchhcccccCCCCcccCCCccccccCC-ceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhcccCCCCcee
Q 042783 322 GPVLAMCLSFAKEPFEIKAGACGTVVRN-AEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLH 400 (525)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~G~p~~~-~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~ 400 (525)
+..+... ........+++|+|+++ .+++|+| +++++++.|+.|||+|+|+.++.|||++++.|...|..+|||+
T Consensus 336 ~~~~~~~----~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~ 410 (539)
T 1mdb_A 336 LVNYTRL----DDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYR 410 (539)
T ss_dssp CEEECCT----TSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEE
T ss_pred cccccCC----CCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCee
Confidence 6433221 11122345789999976 4899999 6899999999999999999999999999999999998899999
Q ss_pred cCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCCCCHHHHH
Q 042783 401 TGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIK 480 (525)
Q Consensus 401 TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 480 (525)
|||+|++++||+|+|.||+||+||++|++|+|.+||++|.+||+|.+++|++.+++..|+.++++|++.. ...+.++++
T Consensus 411 TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~ 489 (539)
T 1mdb_A 411 TGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EAPKAAELK 489 (539)
T ss_dssp EEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-SCCCHHHHH
T ss_pred cCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-CCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888889999998773 457889999
Q ss_pred HHHHhc-CCCCCCccEEEEeccCCCCCCCcccHHHHHHHHHhhhc
Q 042783 481 QFISKQ-VVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAADYQ 524 (525)
Q Consensus 481 ~~l~~~-l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~~~~ 524 (525)
++++++ |+.|++|..|+++++||+|++||++|++|+++|.+.++
T Consensus 490 ~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~ 534 (539)
T 1mdb_A 490 AFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLL 534 (539)
T ss_dssp HHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHh
Confidence 999997 99999999999999999999999999999999988764
No 6
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=3.6e-78 Score=663.34 Aligned_cols=509 Identities=75% Similarity=1.159 Sum_probs=360.0
Q ss_pred cceeeccCCCCCCCCCCCCHHHHHHhhhccCCCccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCc
Q 042783 15 EEIIFRSKLPDIYIPKHLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNV 94 (525)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~ 94 (525)
....+.+..++..+|..+|+.++|.++++++||++|+++.++++++||+||+++++++|++|.++|+++||+|+++++|+
T Consensus 44 ~~~~~~~~~~~~~~p~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns 123 (979)
T 3tsy_A 44 SDVIFRSKLPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNC 123 (979)
T ss_dssp -CCCBCCSSCCCCCCTTSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSC
T ss_pred CCceeecCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCC
Confidence 45667788888889999999999999999999999999976679999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECccchHHHhcc---cCcEEEEecCCC-----------
Q 042783 95 PEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDL---EEVKIMCIDSPP----------- 160 (525)
Q Consensus 95 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~---~~~~~~~~~~~~----------- 160 (525)
+++++++|||+++|++++|+++.++.+++.+++++++++++|++......+... ....++.++...
T Consensus 124 ~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (979)
T 3tsy_A 124 PEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRF 203 (979)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEG
T ss_pred HHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccH
Confidence 999999999999999999999999999999999999999999998765443322 233344333210
Q ss_pred ------------------CCCcccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHH
Q 042783 161 ------------------DGCLHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIY 222 (525)
Q Consensus 161 ------------------~~~~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 222 (525)
....+...+..++++++.||||+++|+++.+.+..........+++.++|++++.+|++|.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 283 (979)
T 3tsy_A 204 TELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY 283 (979)
T ss_dssp GGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHH
T ss_pred HHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHH
Confidence 01122334667788889999999999999998877666554466788999999999999999
Q ss_pred HHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHH
Q 042783 223 ALNSIMLCGLRAGAAILIMQKFEINSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDA 302 (525)
Q Consensus 223 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~ 302 (525)
++...++.++..|+++++.+++++..+++.++++++|++.++|+++..|.+.......++++||.+++||+++++++.++
T Consensus 284 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~ 363 (979)
T 3tsy_A 284 ALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDA 363 (979)
T ss_dssp HHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHH
T ss_pred HHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHH
Confidence 99777899999999999999999999999999999999999999999999987777778899999999999999999999
Q ss_pred HHHHCCCCeeeccccccccccchhcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccccccc
Q 042783 303 VRIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGY 382 (525)
Q Consensus 303 ~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy 382 (525)
+.+.||++++++.||+||++.+++.+............+++|+|+++++++|+|++++++++.|+.|||+|+|+.++.||
T Consensus 364 ~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY 443 (979)
T 3tsy_A 364 VNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGY 443 (979)
T ss_dssp HHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEE
T ss_pred HHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccc
Confidence 99999999999999999999876655433344455678899999999999999988899999999999999999999999
Q ss_pred cCChhhhhcccCCCCceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeE
Q 042783 383 LNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVP 462 (525)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 462 (525)
+++++.|...|+.+|||+|||+|++++||+++|+||+||+||++|++|+|.+||++|.++|+|.+++|++++++..++.+
T Consensus 444 ~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~ 523 (979)
T 3tsy_A 444 LNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVP 523 (979)
T ss_dssp TTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-----------------------------------------
T ss_pred cCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEE
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEeccCCCCCCCcccHHHHHHHHHhhh
Q 042783 463 VAFVVKSNDSQITEDEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAADY 523 (525)
Q Consensus 463 ~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~~~ 523 (525)
+++|+..++...+.++++++++++|+.|++|..++++++||+|++||++|++|+++|+++.
T Consensus 524 ~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 584 (979)
T 3tsy_A 524 VAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL 584 (979)
T ss_dssp -------------------------------------------------------------
T ss_pred EEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhc
Confidence 9999988777788899999999999999999999999999999999999999999998754
No 7
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1.2e-77 Score=619.79 Aligned_cols=494 Identities=27% Similarity=0.461 Sum_probs=390.1
Q ss_pred cCCCCCCCCCCCCHHHHHHhhhccCCCccEEEeCCCC------CeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCc
Q 042783 21 SKLPDIYIPKHLPLHSYCFENISKVASRPCLINGSTG------DVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNV 94 (525)
Q Consensus 21 ~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~ 94 (525)
...|+...|. +|+.++|.++++++|+++|+++.+.+ +++||+||+++++++|++|.++|+++||+|+++++|+
T Consensus 9 ~~~p~~~~~~-~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~ 87 (549)
T 3g7s_A 9 IGFPSLYYPK-ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNS 87 (549)
T ss_dssp CCCCCCCCCC-CCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS
T ss_pred cCCCCCCcCC-CCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence 3344444444 89999999999999999999986421 8999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECccchHHHhcc----cCcEEEEecCC-----------
Q 042783 95 PEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDL----EEVKIMCIDSP----------- 159 (525)
Q Consensus 95 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~----------- 159 (525)
+++++++|||+++|++++|+++.++.+++.+++++++++++|++......+... ....++..+..
T Consensus 88 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (549)
T 3g7s_A 88 IDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMDSG 167 (549)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSSSCHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCCcCHHHHHhcC
Confidence 999999999999999999999999999999999999999999998776554332 11122222210
Q ss_pred -------C-CCCcccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHH
Q 042783 160 -------P-DGCLHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCG 231 (525)
Q Consensus 160 -------~-~~~~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~ 231 (525)
. ....+...+..++++++.||||++||+++.+.+..... .+++.++|++++.+|++|.+++ ..++.+
T Consensus 168 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~~~-~~~~~~ 242 (549)
T 3g7s_A 168 SEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAV----ATGLSHMDTIVGCMPMFHSAEF-GLVNLM 242 (549)
T ss_dssp CSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHH----HHCCCTTCEEECCSCTTSHHHH-HHHTTH
T ss_pred ccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHH----HcCCCCCCEEEEeCcHHHHHHH-HHHHHH
Confidence 0 01134455677888999999999999999998877766 4458899999999999999998 448889
Q ss_pred HHhCCeEEEecCCCHHHHHHHHHhcCceEeecchHHHHHHHcCCCCCC--cCcccceeEeeecCCCcHHHHHHHHHH---
Q 042783 232 LRAGAAILIMQKFEINSLLQLIERYKVTVAPVVPPIVLAIAKSPETEK--YDLSSIRILKSGAAPLGKELEDAVRIK--- 306 (525)
Q Consensus 232 l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~--~~l~~lr~v~~gG~~l~~~~~~~~~~~--- 306 (525)
+..|+++++.+.+++..+++.++++++|+++++|+++..|++...... .++++||.+++||+++++++.+++.+.
T Consensus 243 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~ 322 (549)
T 3g7s_A 243 VTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAE 322 (549)
T ss_dssp HHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHH
T ss_pred HhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999987654333 568899999999999999999999887
Q ss_pred -C--CCCeeeccccccccccchhcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEeccccccccc
Q 042783 307 -L--PNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYL 383 (525)
Q Consensus 307 -~--~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~ 383 (525)
+ |++++++.||+||++.+++.... ......+++|+|+++++++|+|++++++++.|+.|||+|+|+.++.|||
T Consensus 323 ~~~~~~~~~~~~YG~TE~~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~ 398 (549)
T 3g7s_A 323 KCNNPRLRHNQIWGMTEACPMVTTNPP----LRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYW 398 (549)
T ss_dssp HSSCTTCEEEEEEECGGGSSEEEECCG----GGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEET
T ss_pred hcCCccccccceEeccccchhhhcCCc----cccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhC
Confidence 5 23899999999999987765421 1224678899999999999999889999999999999999999999999
Q ss_pred CChhhhhcccC--CCC--ceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCC
Q 042783 384 NDPEATKSTID--KEG--WLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAG 459 (525)
Q Consensus 384 ~~~~~~~~~~~--~~~--~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 459 (525)
++++.+...|. .+| ||+|||+|++++||+|+|.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..+
T Consensus 399 ~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g 478 (549)
T 3g7s_A 399 KREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAG 478 (549)
T ss_dssp TCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC----
T ss_pred CChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccC
Confidence 99999998872 566 99999999999999999999999999999999999999999999999999999999998889
Q ss_pred CeEEEEEEeCCC--CCCCHHHHHHHHHhcCCCCCCccEEEEeccCCCCCCCcccHHHHHHHHHhhhc
Q 042783 460 EVPVAFVVKSND--SQITEDEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAADYQ 524 (525)
Q Consensus 460 ~~~~~~v~~~~~--~~~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~~~~ 524 (525)
+.++++|++.++ ...+.++|+++|+++|+.|++|..|+++++||+|++||++|++|++++.+..+
T Consensus 479 ~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 545 (549)
T 3g7s_A 479 EVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHH 545 (549)
T ss_dssp --CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC---------------------
T ss_pred ceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhcccc
Confidence 999999998876 56888999999999999999999999999999999999999999999977654
No 8
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.2e-76 Score=606.22 Aligned_cols=474 Identities=20% Similarity=0.314 Sum_probs=414.9
Q ss_pred CCHHHHHHhhhccCCCccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCCeE
Q 042783 32 LPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIA 111 (525)
Q Consensus 32 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 111 (525)
+|+.++|.++++++|+++|+++...++++||+||+++++++|++|.++|+++||+|+++++|+++++++++||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 58999999999999999999986556899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHHcCccEEEE--CccchHHH-hcccCcEEEEecCC----------------CCCCccccccccc
Q 042783 112 TAANPFFTPAETCKQAKASGAKLIIT--KASYVDKV-KDLEEVKIMCIDSP----------------PDGCLHFSELTQA 172 (525)
Q Consensus 112 v~l~~~~~~~~~~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~ 172 (525)
+|+++.++.+++.+++++++++++++ +......+ .......++..++. .....+...+..+
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~T 161 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYT 161 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEEGGGTEETTEECCCSCCCCCCCCCTTSEEEEEEC
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEEecchhhcCcccccCCccCCCCCCCCCeEEEEeC
Confidence 99999999999999999999999999 76655444 32222232222110 0111234456778
Q ss_pred CCCCCCCceeEcchHHHHHHHHHhhhcCCCCCcc--CCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecCCCHHHHH
Q 042783 173 DEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYF--TKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEINSLL 250 (525)
Q Consensus 173 ~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~--~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~ 250 (525)
+++++.||||.+||+++.+.+..... .+++ ++++++++.+|++|.+++...++.+++.|+++++.+.+++..++
T Consensus 162 SGTTG~PKgV~~sh~~~~~~~~~~~~----~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~ 237 (504)
T 1t5h_X 162 SGTTGLPKAAIIPQRAAESRVLFMST----QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL 237 (504)
T ss_dssp CC---CCCEEEEEGGGHHHHHHHHHH----TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHH
T ss_pred CCCCCCCCEEEecHHHHHHHHHHHHH----hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHH
Confidence 88899999999999999988877665 3445 78899999999999999867789999999999999999999999
Q ss_pred HHHHhcCceEeecchHHHHHHHcCCC--CCCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeeccccccccccchhcc
Q 042783 251 QLIERYKVTVAPVVPPIVLAIAKSPE--TEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAMC 328 (525)
Q Consensus 251 ~~l~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~ 328 (525)
+.++++++|+++++|+++..|++... .....+++||.+++||+++++++.+++.+.+ ++.+++.||+||++. +...
T Consensus 238 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~-~~~~ 315 (504)
T 1t5h_X 238 QLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMN-SLYM 315 (504)
T ss_dssp HHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTTEE-EEEE
T ss_pred HHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeeccccccc-cccc
Confidence 99999999999999999999987642 2345688999999999999999999999999 789999999999942 2211
Q ss_pred cccCCCCcccCCCccccccCCceEEEEcCCCC---CCCCCCCCeEEEEe-cccccccccCChhhhhcccCCCCceecCce
Q 042783 329 LSFAKEPFEIKAGACGTVVRNAEMKIVDPETG---ASLPTNKPGEICIR-GDQIMTGYLNDPEATKSTIDKEGWLHTGDI 404 (525)
Q Consensus 329 ~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~---~~~~~g~~Gel~v~-g~~~~~gy~~~~~~~~~~~~~~~~~~TgDl 404 (525)
.....+++|+|.++++++++|. ++ ++++.|+.|||+++ |+.++.||+++++.+...| .+|||+|||+
T Consensus 316 -------~~~~~~~~g~p~~~~~~~i~~~-~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDl 386 (504)
T 1t5h_X 316 -------RQPKTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDV 386 (504)
T ss_dssp -------ESCSSSSEEBCCTTCCEEEECT-TSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEE
T ss_pred -------cCCCCCccccCCCCCceeEEec-cCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcE
Confidence 0235678999999999999994 45 89999999999999 9999999999999999988 6899999999
Q ss_pred EEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCCCCHHHHHHHHH
Q 042783 405 GYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFIS 484 (525)
Q Consensus 405 ~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 484 (525)
|++++||++++.||+||+||++|++|+|.+||+.|.+||+|.+++|++.+++..|+.++++|++.++...+.++++++++
T Consensus 387 g~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~ 466 (504)
T 1t5h_X 387 AVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCR 466 (504)
T ss_dssp EEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHH
T ss_pred EEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988899999999988877788999999999
Q ss_pred h-cCCCCCCccEEEEeccCCCCCCCcccHHHHHHHHH
Q 042783 485 K-QVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLA 520 (525)
Q Consensus 485 ~-~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~ 520 (525)
+ +|+.|++|..++++++||+|++||++|++|+++|+
T Consensus 467 ~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 467 SSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp TSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred hccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 8 99999999999999999999999999999999874
No 9
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.4e-77 Score=614.30 Aligned_cols=487 Identities=28% Similarity=0.418 Sum_probs=422.3
Q ss_pred CCCCCCCCCCHHHHHHhhhccCCCccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHH
Q 042783 24 PDIYIPKHLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLG 103 (525)
Q Consensus 24 ~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA 103 (525)
.....+++.|+.++|.++++++|+++|+++.+.+.++||+||+++++++|++|.++|+++||+|+++++|++++++++||
T Consensus 8 ~~~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 87 (517)
T 3r44_A 8 HVDDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYG 87 (517)
T ss_dssp ----CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred cCCCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHH
Confidence 34456777899999999999999999999874345999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECccchHHHhccc----C---c-EEEEe---------cC-----CCC
Q 042783 104 ASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLE----E---V-KIMCI---------DS-----PPD 161 (525)
Q Consensus 104 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~---~-~~~~~---------~~-----~~~ 161 (525)
|+++|++++|+++.++.+++.+++++++++++|++......+.... . . ..... .. ...
T Consensus 88 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (517)
T 3r44_A 88 AAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVEC 167 (517)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHHHCCCCCCCCCC
T ss_pred HHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhhccCcCCCCCCC
Confidence 9999999999999999999999999999999999987665443221 0 0 01000 00 011
Q ss_pred CCcccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEe
Q 042783 162 GCLHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIM 241 (525)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~ 241 (525)
...+...+..++++++.||||++||+++.+.+..... .++++++|++++.+|++|.+++ ...+.+++.|+++++.
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~-~~~~~~~~~G~~~v~~ 242 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAS----TIDVRYRDRLLLPLPMFHVAAL-TTVIFSAMRGVTLISM 242 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHH----HSCCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHH----hcCCCCCCEEEEeCchHHHHHH-HHHHHHHhcCeEEEEe
Confidence 1234455777888899999999999999998887776 4468899999999999999999 4444445599999999
Q ss_pred cCCCHHHHHHHHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeecccccccc
Q 042783 242 QKFEINSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEA 321 (525)
Q Consensus 242 ~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~yG~tE~ 321 (525)
+.+++..+++.++++++|++.++|+++..|.+.......++++||.+++||+++++++.+++.+. ++++++.||+||+
T Consensus 243 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~ 320 (517)
T 3r44_A 243 PQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTES 320 (517)
T ss_dssp SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGG
T ss_pred CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeeccccc
Confidence 99999999999999999999999999999988766556678999999999999999999999886 8999999999999
Q ss_pred ccchhcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhcccCCCCceec
Q 042783 322 GPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHT 401 (525)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~T 401 (525)
+..++.... .......+++|+|+++++++++| +++..++.| .|||+|+|+.++.||+++++.+...| .+|||+|
T Consensus 321 ~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~T 394 (517)
T 3r44_A 321 CGGGTLLLS---EDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRT 394 (517)
T ss_dssp TTCEEEECG---GGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEE
T ss_pred ccceeecCC---ccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEec
Confidence 876655421 12244678899999999999999 678888888 89999999999999999999999999 6899999
Q ss_pred CceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCCCCHHHHHH
Q 042783 402 GDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQ 481 (525)
Q Consensus 402 gDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 481 (525)
||+|++++||+++|.||.||+||++|++|+|.+||++|.++|+|.+++|++++++..++.++++| ..++...+.+++++
T Consensus 395 GDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~~l~~ 473 (517)
T 3r44_A 395 GDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQIVE 473 (517)
T ss_dssp EEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHHHHHH
T ss_pred ceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888888888 55666788999999
Q ss_pred HHHhcCCCCCCccEEEEeccCCCCCCCcccHHHHHHHHHhhhc
Q 042783 482 FISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAADYQ 524 (525)
Q Consensus 482 ~l~~~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~~~~ 524 (525)
+++++|+.|++|..|+++++||+|++||++|++|+++|.+++.
T Consensus 474 ~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 516 (517)
T 3r44_A 474 YCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATVP 516 (517)
T ss_dssp HHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred HHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999988764
No 10
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.1e-76 Score=608.03 Aligned_cols=481 Identities=22% Similarity=0.274 Sum_probs=416.9
Q ss_pred CCHHHHHHhhhccCCCccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCCeE
Q 042783 32 LPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIA 111 (525)
Q Consensus 32 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 111 (525)
|||.+.|.++++++|+++|+++. ++++||+||+++++++|++|.++|+++|++|+++++|++++++++|||+++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~ 78 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR--DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAY 78 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCE
T ss_pred CcHHHHHHHHHHHCCCceEEEeC--CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 68999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHHcCccEEEECccchHHHhcccCcEEEEec---------C-------CCCCCcccccccccCCC
Q 042783 112 TAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLEEVKIMCID---------S-------PPDGCLHFSELTQADEK 175 (525)
Q Consensus 112 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~---------~-------~~~~~~~~~~~~~~~~~ 175 (525)
+|+++.++.+++.++++++++++++++....... . ....+..+ . ......+...+..++++
T Consensus 79 vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGT 155 (512)
T 3fce_A 79 IPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--L-PVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGS 155 (512)
T ss_dssp EEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--C-SSEEEETHHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC-
T ss_pred EeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--c-ccceechhhhhhhcccccccCCCccccCCCCCeEEEEECCCC
Confidence 9999999999999999999999999985432110 0 01111110 0 00112234456778888
Q ss_pred CCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC---CCHHHHHHH
Q 042783 176 DLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK---FEINSLLQL 252 (525)
Q Consensus 176 ~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~ 252 (525)
++.||||++||+++.+.+..... .++++++|++++.+|++|..++ ..++.+++.|+++++.+. +++..+++.
T Consensus 156 TG~PKgv~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~ 230 (512)
T 3fce_A 156 TGNPKGVQITYNCLVSFTKWAVE----DFNLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAIDKDMIARPKDLFAS 230 (512)
T ss_dssp ---CEEEEEEHHHHHHHHHHHHH----HTTCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECCHHHHHSHHHHHHH
T ss_pred CCCCceEEEehHHHHHHHHHHHH----hcCCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECCHHHhhCHHHHHHH
Confidence 89999999999999998887776 4568899999999999999998 778999999999999876 689999999
Q ss_pred HHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeeccccccccccchhcccccC
Q 042783 253 IERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAMCLSFA 332 (525)
Q Consensus 253 l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~ 332 (525)
++++++|++.++|+++..++.........+++||.+++||+++++++.+++.+.|+++++++.||+||++..++......
T Consensus 231 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~ 310 (512)
T 3fce_A 231 LEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTE 310 (512)
T ss_dssp HHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCH
T ss_pred HHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecc
Confidence 99999999999999999999887777778899999999999999999999999999999999999999997766432111
Q ss_pred CCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhccc---CCCCceecCceEEEcC
Q 042783 333 KEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTI---DKEGWLHTGDIGYIDD 409 (525)
Q Consensus 333 ~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~---~~~~~~~TgDl~~~~~ 409 (525)
.........++|+|.++++++++| +++++++.|+.|||+++||.++.|||++++.+...| +++|||+|||+|++ +
T Consensus 311 ~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~ 388 (512)
T 3fce_A 311 EVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-E 388 (512)
T ss_dssp HHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-E
T ss_pred ccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-c
Confidence 111234667899999999999999 789999999999999999999999999999998877 45779999999999 7
Q ss_pred CCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCCCCH----HHHHHHHHh
Q 042783 410 NDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITE----DEIKQFISK 485 (525)
Q Consensus 410 dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~l~~ 485 (525)
||++++.||.||+||++|++|+|.+||+.|.++|+|.+++|++++++..++.++++|++.++..... +++++++++
T Consensus 389 dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~ 468 (512)
T 3fce_A 389 NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNE 468 (512)
T ss_dssp TTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHT
T ss_pred CCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998888888999999876544433 579999999
Q ss_pred cCCCCCCccEEEEeccCCCCCCCcccHHHHHHHHHhhhc
Q 042783 486 QVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAADYQ 524 (525)
Q Consensus 486 ~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~~~~ 524 (525)
+|+.|++|..++++++||+|++||++|++|++.+.++..
T Consensus 469 ~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~ 507 (512)
T 3fce_A 469 RLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEH 507 (512)
T ss_dssp TSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC---
T ss_pred hCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhccc
Confidence 999999999999999999999999999999999988764
No 11
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.1e-75 Score=606.91 Aligned_cols=481 Identities=22% Similarity=0.322 Sum_probs=398.9
Q ss_pred CCCCCCHH-HHHHhhhccCCCccEEEeCC---CCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHH
Q 042783 28 IPKHLPLH-SYCFENISKVASRPCLINGS---TGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLG 103 (525)
Q Consensus 28 ~~~~~~l~-~~l~~~a~~~p~~~a~~~~~---~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA 103 (525)
.|..+|+. ++|+++++++|+++|+++.+ .++++||+||.++++++|++|.++|+++||+|+++++|++++++++||
T Consensus 51 ~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA 130 (580)
T 3etc_A 51 VPENFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLG 130 (580)
T ss_dssp CCSSCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHH
T ss_pred CcccchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 56677887 99999999999999998632 247999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECccch--HHHhcc----cC--cEEEEecCC----------------
Q 042783 104 ASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYV--DKVKDL----EE--VKIMCIDSP---------------- 159 (525)
Q Consensus 104 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~--~~~~~~----~~--~~~~~~~~~---------------- 159 (525)
|+++|++++|+++.++.+++.+++++++++++|++.+.. ..+... +. ...+.++..
T Consensus 131 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (580)
T 3etc_A 131 LHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESS 210 (580)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHSC
T ss_pred HHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhCC
Confidence 999999999999999999999999999999999987643 322211 11 233333211
Q ss_pred ----------CCCCcccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHH
Q 042783 160 ----------PDGCLHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIML 229 (525)
Q Consensus 160 ----------~~~~~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~ 229 (525)
.....+...+..++++++.||||.++|.+++..+..... .+++.+++++++.+|+.|..++...++
T Consensus 211 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (580)
T 3etc_A 211 PIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKY----WQNVEDDGLHYTVADSGWGKCVWGKLY 286 (580)
T ss_dssp SCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHT----TSCCCTTCEEEECCCTTSTHHHHHTTH
T ss_pred cccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHH----hhCCCCCceEEEeCChHHHHHHHHHHH
Confidence 011123344667788889999999999998877665444 345788999999999999988866688
Q ss_pred HHHHhCCeEEEe--cCCCHHHHHHHHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHC
Q 042783 230 CGLRAGAAILIM--QKFEINSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKL 307 (525)
Q Consensus 230 ~~l~~G~~~v~~--~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~ 307 (525)
.++..|+++++. ..+++..+++.++++++|+++++|++++.|.+. .....++++||.+++|||++++++.++|.+.+
T Consensus 287 ~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 365 (580)
T 3etc_A 287 GQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT 365 (580)
T ss_dssp HHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCCHHHHHHHHHHH
T ss_pred HHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCCHHHHHHHHHHh
Confidence 999999999987 468999999999999999999999999999886 33455789999999999999999999999988
Q ss_pred CCCeeeccccccccccchhcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEec-----ccccccc
Q 042783 308 PNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRG-----DQIMTGY 382 (525)
Q Consensus 308 ~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g-----~~~~~gy 382 (525)
++++++.||+||++..++.. .......+++|+|+|+++++|+| +++++++.|+.|||+|+| +.++.||
T Consensus 366 -g~~i~~~YG~TE~~~~~~~~-----~~~~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY 438 (580)
T 3etc_A 366 -GIKLMEGFGQTETVVTIATF-----PWMEPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHY 438 (580)
T ss_dssp -SCCCEEEECCTTSSCCEECC-----TTSCCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEE
T ss_pred -CCeEecccccccccceeecC-----CCCCCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccc
Confidence 89999999999998665543 22345678999999999999999 579999999999999997 7899999
Q ss_pred cCChhhhhcccCCCCceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeE
Q 042783 383 LNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVP 462 (525)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 462 (525)
+++++.+...| .+|||+|||+|++|+||+++|+||+||+||++|++|+|.+||++|.+||+|.+++|++++++..|+.+
T Consensus 439 ~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~ 517 (580)
T 3etc_A 439 GKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVI 517 (580)
T ss_dssp TTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEE
T ss_pred cCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEE
Confidence 99999999999 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCC---HHHHHHHHHhcCCCCCCccEEEEeccCCCCCCCcccHHHHHHHHHh
Q 042783 463 VAFVVKSNDSQIT---EDEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAA 521 (525)
Q Consensus 463 ~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~ 521 (525)
+++|++.++...+ .++|+++++++|++|++|..|+++++||+|++|||+|++|++++.+
T Consensus 518 ~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 518 KATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------------
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence 9999988775544 3689999999999999999999999999999999999999998864
No 12
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.7e-77 Score=617.57 Aligned_cols=483 Identities=24% Similarity=0.338 Sum_probs=329.7
Q ss_pred CCCCCCHHHHHHhhhccCCCccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHHHHHh
Q 042783 28 IPKHLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYR 107 (525)
Q Consensus 28 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~ 107 (525)
.+.+.|+.++|.++++++|+++|+++. ++++||+||+++++++|++|.++|+++||+|+++++|+++++++++||+++
T Consensus 26 ~~~~~tl~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 103 (544)
T 3o83_A 26 YWIDQPLTRILTVGVQSHPHSLAIICG--ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKA 103 (544)
T ss_dssp SCCCCCTTHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEcC--CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 556689999999999999999999987 899999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCCHHHHHHHHHHcCccEEEECccch--------HHHhc-ccC-cEEEEecCC------------------
Q 042783 108 GAIATAANPFFTPAETCKQAKASGAKLIITKASYV--------DKVKD-LEE-VKIMCIDSP------------------ 159 (525)
Q Consensus 108 G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~--------~~~~~-~~~-~~~~~~~~~------------------ 159 (525)
|++++|+++.++.+++.+++++++++++|++.... ..+.. ... ..++..+..
T Consensus 104 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (544)
T 3o83_A 104 GVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFV 183 (544)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHSCCSSCC
T ss_pred CcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhccccccc
Confidence 99999999999999999999999999999987543 11111 111 122222211
Q ss_pred ---CCCCcccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHH-HHHHHHHhC
Q 042783 160 ---PDGCLHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNS-IMLCGLRAG 235 (525)
Q Consensus 160 ---~~~~~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~~l~~G 235 (525)
.....+...+..++++++.||||++||+++.+.+..... .++++++|++++.+|++|.+++.. .++.++..|
T Consensus 184 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G 259 (544)
T 3o83_A 184 DFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE----ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAG 259 (544)
T ss_dssp CCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTT
T ss_pred ccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHH----HhCCCCCCeEEEecCcceEeecchHHHHHHHHcC
Confidence 011223445667888899999999999999998887776 456889999999999999999844 589999999
Q ss_pred CeEEEecCCCHHHHHHHHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeecc
Q 042783 236 AAILIMQKFEINSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQG 315 (525)
Q Consensus 236 ~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~ 315 (525)
+++++.+.+++..+++.++++++|++.++|+++..+++........+++||.+++||+++++++.+++.+.+ ++++++.
T Consensus 260 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~ 338 (544)
T 3o83_A 260 GCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQV 338 (544)
T ss_dssp CEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEE
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEee
Confidence 999999999999999999999999999999999999987766666789999999999999999999999988 8999999
Q ss_pred ccccccccchhcccccCCCCcccCCCcccccc-CCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhcccC
Q 042783 316 YGMTEAGPVLAMCLSFAKEPFEIKAGACGTVV-RNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTID 394 (525)
Q Consensus 316 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~ 394 (525)
||+||++..++.. .........++|+|+ ++++++|+| +++++++.|+.|||+|+|+.++.||+++++.+...|+
T Consensus 339 YG~TE~~~~~~~~----~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 413 (544)
T 3o83_A 339 FGMAEGLVNYTRL----DDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFD 413 (544)
T ss_dssp EECTTSCEEECCT----TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBC
T ss_pred eccccccceeecC----CCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCC
Confidence 9999988544322 122233456889996 899999999 7899999999999999999999999999999999998
Q ss_pred CCCceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCCC
Q 042783 395 KEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQI 474 (525)
Q Consensus 395 ~~~~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 474 (525)
.+|||+|||+|++++||++++.||+||+||++|++|+|.+||++|.+||+|.+++|++++++..|+.++++|+..+ ...
T Consensus 414 ~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~ 492 (544)
T 3o83_A 414 EDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PEL 492 (544)
T ss_dssp TTCCEEEEEEEEECTTSCEEEEEEEC------------------------------------------------------
T ss_pred CCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CCC
Confidence 8999999999999999999999999999999999999999999999999999999999999988999999998765 456
Q ss_pred CHHHHHHHHHh-cCCCCCCccEEEEeccCCCCCCCcccHHHHHHHHHhhh
Q 042783 475 TEDEIKQFISK-QVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAADY 523 (525)
Q Consensus 475 ~~~~l~~~l~~-~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~~~ 523 (525)
+.+++++++++ +|+.|++|..++++++||+|++||++|++|++++.+..
T Consensus 493 ~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 542 (544)
T 3o83_A 493 KAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTST 542 (544)
T ss_dssp --------------------------------------------------
T ss_pred CHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhcc
Confidence 77889999998 79999999999999999999999999999999997654
No 13
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3.1e-75 Score=596.70 Aligned_cols=483 Identities=19% Similarity=0.233 Sum_probs=419.6
Q ss_pred CCHHHHHHhhhccCCCccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEECCCchhHHHHHHHHHHhCCe
Q 042783 32 LPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKL-GIGQRDVIMLLLPNVPEFVFSFLGASYRGAI 110 (525)
Q Consensus 32 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~-gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 110 (525)
||+.+.|.++++++|+++|+++. ++++||+||+++++++|++|.+. |.++|++|+++++|++++++++|||+++|++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 78 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHP 78 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCE
Confidence 68999999999999999999987 79999999999999999999885 8889999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHHcCccEEEECccchHHHhcccCcEEEEecC------------CCCCCcccccccccCCCCCC
Q 042783 111 ATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLEEVKIMCIDS------------PPDGCLHFSELTQADEKDLP 178 (525)
Q Consensus 111 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 178 (525)
++|+++.++.+++.+++++++++++|++......... .....+.... ......+...+..++++++.
T Consensus 79 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~ 157 (511)
T 3e7w_A 79 YIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG-QQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGN 157 (511)
T ss_dssp EEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC-CSSCEEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSS
T ss_pred EEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc-cccceecHhhhhccccCCccccccCCCCCeEEEEECCCCCCC
Confidence 9999999999999999999999999996543211100 0111111100 00112234456778888999
Q ss_pred CceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC---CCHHHHHHHHHh
Q 042783 179 HVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK---FEINSLLQLIER 255 (525)
Q Consensus 179 ~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~ 255 (525)
||||++||+++.+.+.+... .++++++|++++.+|++|..++ ..++.++..|+++++.+. +++..+++.+++
T Consensus 158 PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~ 232 (511)
T 3e7w_A 158 PKGVQISAANLQSFTDWICA----DFPVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKK 232 (511)
T ss_dssp CEEEEEEHHHHHHHHHHHHH----HSTTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHH
T ss_pred CCEEEEcHHHHHHHHHHHHH----hcCCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHH
Confidence 99999999999998887766 4558899999999999999998 778999999999999876 689999999999
Q ss_pred cCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeeccccccccccchhcccccCCCC
Q 042783 256 YKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAMCLSFAKEP 335 (525)
Q Consensus 256 ~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~ 335 (525)
+++|++.++|+++..++.........++++|.+++||+++++++.+++.+.||++++++.||+||++..++.........
T Consensus 233 ~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~ 312 (511)
T 3e7w_A 233 SGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVI 312 (511)
T ss_dssp HCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHH
T ss_pred cCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEecccccc
Confidence 99999999999999999987767777899999999999999999999999999999999999999987766432111111
Q ss_pred cccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhcccC---CCCceecCceEEEcCCCc
Q 042783 336 FEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTID---KEGWLHTGDIGYIDDNDE 412 (525)
Q Consensus 336 ~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~---~~~~~~TgDl~~~~~dg~ 412 (525)
......++|+|+++++++|+| +++++++.|+.|||+|+|+.++.||+++++.+...|. +.+||+|||+|++ +||+
T Consensus 313 ~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~ 390 (511)
T 3e7w_A 313 SRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQ 390 (511)
T ss_dssp TTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTE
T ss_pred ccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCe
Confidence 234567899999999999999 6799999999999999999999999999999988872 2237999999999 5999
Q ss_pred EEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCCCCH----HHHHHHHHhcCC
Q 042783 413 LFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITE----DEIKQFISKQVV 488 (525)
Q Consensus 413 l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~l~~~l~ 488 (525)
+++.||.||+||++|++|+|.+||+.|.++|+|.+++|++++++..++.++++|++.++..... ++++++++++|+
T Consensus 391 l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~ 470 (511)
T 3e7w_A 391 IFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLP 470 (511)
T ss_dssp EEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSC
T ss_pred EEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCc
Confidence 9999999999999999999999999999999999999999998888899999999877654443 679999999999
Q ss_pred CCCCccEEEEeccCCCCCCCcccHHHHHHHHHhhhc
Q 042783 489 FYKRINRVFFIDAIPKAPSGKILRKELRAKLAADYQ 524 (525)
Q Consensus 489 ~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~~~~ 524 (525)
.|++|..++++++||+|++||++|++|++++.+...
T Consensus 471 ~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 506 (511)
T 3e7w_A 471 AYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSH 506 (511)
T ss_dssp GGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHT
T ss_pred hhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhcc
Confidence 999999999999999999999999999999987654
No 14
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.5e-76 Score=610.04 Aligned_cols=487 Identities=25% Similarity=0.370 Sum_probs=379.6
Q ss_pred CCCHHHHHHhhhccCCCccEEEeCC--CCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHHHHHhC
Q 042783 31 HLPLHSYCFENISKVASRPCLINGS--TGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRG 108 (525)
Q Consensus 31 ~~~l~~~l~~~a~~~p~~~a~~~~~--~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G 108 (525)
..|+.++|.++++++|+++|+++.+ .++++||+||+++++++|++|.++|+++||+|+++++|++++++++|||+++|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 96 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG 96 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 4689999999999999999998522 25899999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCCHHHHHHHHHHcCccEEEECccchHHHhcc----cCc-EEEEecCCC-------------------CCCc
Q 042783 109 AIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDL----EEV-KIMCIDSPP-------------------DGCL 164 (525)
Q Consensus 109 ~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~----~~~-~~~~~~~~~-------------------~~~~ 164 (525)
++++|+++.++.+++.+++++++++++|+++.....+... +.. .++.++... ....
T Consensus 97 av~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (541)
T 1v25_A 97 AVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPER 176 (541)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCCCCCCCTT
T ss_pred cEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccCCcccCCCC
Confidence 9999999999999999999999999999998776544322 222 233332210 0112
Q ss_pred ccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-
Q 042783 165 HFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK- 243 (525)
Q Consensus 165 ~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~- 243 (525)
+...+..++++++.||||++||+++...+..... ...++++++|++++.+|++|.+++ ..++.+++.|+++++.+.
T Consensus 177 ~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~--~~~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G~~~v~~~~~ 253 (541)
T 1v25_A 177 AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASL--VDGTALSEKDVVLPVVPMFHVNAW-CLPYAATLVGAKQVLPGPR 253 (541)
T ss_dssp SEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTS--TTTTCCCTTCEEEECSCTTSHHHH-THHHHHHHHTCEEEECTTC
T ss_pred CcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhh--cccccCCCCCEEEEeccchhhhHH-HHHHHHHhcCceEEeeCCC
Confidence 2334667788889999999999999876654221 113567899999999999999998 567889999999999874
Q ss_pred CCHHHHHHHHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeecccccccccc
Q 042783 244 FEINSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGP 323 (525)
Q Consensus 244 ~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~ 323 (525)
+++..+++.++++++|+++++|+++..|++.......++++||.+++||+++++++.+++ +.+ ++++++.||+||++.
T Consensus 254 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG~TE~~~ 331 (541)
T 1v25_A 254 LDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGYGLTETSP 331 (541)
T ss_dssp CSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEEECGGGSS
T ss_pred CCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCceeeccccccccc
Confidence 699999999999999999999999999987654444567899999999999999999999 556 899999999999997
Q ss_pred chhcccccCC----CC--cccCCCccccccCCceEEEEcCCCCCCCCC--CCCeEEEEecccccccccCChhhhhcccCC
Q 042783 324 VLAMCLSFAK----EP--FEIKAGACGTVVRNAEMKIVDPETGASLPT--NKPGEICIRGDQIMTGYLNDPEATKSTIDK 395 (525)
Q Consensus 324 ~~~~~~~~~~----~~--~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~--g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~ 395 (525)
+++....... .. .....+++|+|+++++++|+| +++++++. ++.|||+|+||.++.||+++++.|...|..
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~ 410 (541)
T 1v25_A 332 VVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTP 410 (541)
T ss_dssp EEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCT
T ss_pred ceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccC
Confidence 7664321100 00 012457899999999999999 67888874 368999999999999999999999999977
Q ss_pred CCceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCCCC
Q 042783 396 EGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQIT 475 (525)
Q Consensus 396 ~~~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 475 (525)
+|||+|||+|++|+||+++|.||+||+||++|++|+|.+||++|.+||+|.+++|++++++..++.++++|++. +...+
T Consensus 411 ~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~~~ 489 (541)
T 1v25_A 411 DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPT 489 (541)
T ss_dssp TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---------
T ss_pred CCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988889999998876 44566
Q ss_pred HHHHHHHHHh-cCCCCCCccEEEEeccCCCCCCCcccHHHHHHHHHhhhc
Q 042783 476 EDEIKQFISK-QVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAADYQ 524 (525)
Q Consensus 476 ~~~l~~~l~~-~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~~~~ 524 (525)
.+++++++++ +|+.|++|..++++++||+|++||++|++|+++|.+.++
T Consensus 490 ~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 539 (541)
T 1v25_A 490 PEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYG 539 (541)
T ss_dssp -----------CCCTTTSCSBC--------------CCTTHHHHSTTSSC
T ss_pred HHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhhC
Confidence 7889999999 899999999999999999999999999999999987765
No 15
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.7e-75 Score=602.30 Aligned_cols=484 Identities=21% Similarity=0.304 Sum_probs=416.7
Q ss_pred cceeeccCCCCCCCCCCCCHHHHHHhhhccCCCccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCc
Q 042783 15 EEIIFRSKLPDIYIPKHLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNV 94 (525)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~ 94 (525)
+.....++.....++...|+.++|.++++++|+++|+++. ++++||+||+++++++|++|.++|+++||+|+++++|+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~ 99 (563)
T 1amu_A 22 EQYLFAVNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKS 99 (563)
T ss_dssp HHHHHHTTCCCCCCCTTCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS
T ss_pred HHHHHHhCCCCCCCCCCCcHHHHHHHHHHHCCCCeEEEeC--CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC
Confidence 3445556667777888889999999999999999999986 78999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECccchHHHhccc-CcEEEEecCC------------CC
Q 042783 95 PEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLE-EVKIMCIDSP------------PD 161 (525)
Q Consensus 95 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~------------~~ 161 (525)
+++++++|||+++|++++|+++.++.+++.+++++++++++|++........... ...+..+... ..
T Consensus 100 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (563)
T 1amu_A 100 IDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPS 179 (563)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTTSCCSCCCCCC
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchhhccccCccCCCCC
Confidence 9999999999999999999999999999999999999999999987665554432 1122222210 01
Q ss_pred CCcccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEe
Q 042783 162 GCLHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIM 241 (525)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~ 241 (525)
...+...+..++++++.||||++||+++.+.+..... .++++++|++++.+|++|..++ ..++.+++.|+++++.
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~ 254 (563)
T 1amu_A 180 KSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFEN----SLNVTEKDRIGQFASISFDASV-WEMFMALLTGASLYII 254 (563)
T ss_dssp CTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHH----TSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHH----hcCCCCCCEEEEeCCccHHHHH-HHHHHHHHCCCEEEEc
Confidence 1223455677888899999999999999988877666 4568899999999999999998 6788999999999998
Q ss_pred cC---CCHHHHHHHHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeeccccc
Q 042783 242 QK---FEINSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGM 318 (525)
Q Consensus 242 ~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~yG~ 318 (525)
+. +++..+++.++++++|++.++|+++..+... .+++||.+++||+++++++.+++.+ .+.+++.||+
T Consensus 255 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~---~~~~~~~YG~ 325 (563)
T 1amu_A 255 LKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGP 325 (563)
T ss_dssp CHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECC
T ss_pred ChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHh---CCeEEEEECc
Confidence 75 6899999999999999999999998877432 3678999999999999999999876 4789999999
Q ss_pred cccccchhcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhcccC----
Q 042783 319 TEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTID---- 394 (525)
Q Consensus 319 tE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~---- 394 (525)
||++..++..... ........++|+|+++++++|+| +++++++.|+.|||+|+|+.++.|||++++.|...|.
T Consensus 326 TE~~~~~~~~~~~--~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~ 402 (563)
T 1amu_A 326 TETTICATTWVAT--KETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPF 402 (563)
T ss_dssp GGGSSCSEEEECC--SSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSS
T ss_pred CHHhHhheeeecc--cccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCC
Confidence 9998766543211 11223567899999999999999 6899999999999999999999999999999988773
Q ss_pred --CCCceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCC
Q 042783 395 --KEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDS 472 (525)
Q Consensus 395 --~~~~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 472 (525)
+++||+|||+|++|+||+|+|.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|+...
T Consensus 403 ~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~-- 480 (563)
T 1amu_A 403 VPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK-- 480 (563)
T ss_dssp STTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--
T ss_pred CCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--
Confidence 2469999999999999999999999999999999999999999999999999999999998888888999998753
Q ss_pred CCCHHHHHHHHHhcCCCCCCccEEEEeccCCCCCCCcccHHHHHHHH
Q 042783 473 QITEDEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKL 519 (525)
Q Consensus 473 ~~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~ 519 (525)
..+.++|+++++++|+.|++|..++++++||+|++||++|++|++.+
T Consensus 481 ~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 481 HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 46789999999999999999999999999999999999999998654
No 16
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=7.7e-76 Score=601.26 Aligned_cols=475 Identities=27% Similarity=0.380 Sum_probs=317.1
Q ss_pred CCCCHHHHHHhhhccCCCccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCC
Q 042783 30 KHLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGA 109 (525)
Q Consensus 30 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 109 (525)
.++|+.++|.++++++||++|+++. ++++||+||+++++++|++|.++|+++||+|+++++|++++++++|||+++|+
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 81 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD--GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGA 81 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC--CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 4579999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCHHHHHHHHHHcCccEEEECccchHHHh----cccCc-EEEEecCC-------------------CCCCcc
Q 042783 110 IATAANPFFTPAETCKQAKASGAKLIITKASYVDKVK----DLEEV-KIMCIDSP-------------------PDGCLH 165 (525)
Q Consensus 110 ~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~----~~~~~-~~~~~~~~-------------------~~~~~~ 165 (525)
+++|+++.++.+++.+++++++++++|++......+. ..... .++.++.. .....+
T Consensus 82 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 161 (509)
T 3ivr_A 82 ILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASDTPFSAPEFGAAD 161 (509)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGTCCCSCCCCCCCCTTS
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhccCCCCCCcCCCCccc
Confidence 9999999999999999999999999999988765421 12222 22222210 001122
Q ss_pred cccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecCCC
Q 042783 166 FSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFE 245 (525)
Q Consensus 166 ~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~ 245 (525)
...+..++++++.||||.+||+++.+.+..... .++++++|++++.+|++|.+++ ...+.+++.|++.++...++
T Consensus 162 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~-~~~~~~~~~~g~~~~~~~~~ 236 (509)
T 3ivr_A 162 GFVIIHTAAVGGRPRGALISQGNLLIAQSSLVD----AWRLTEADVNLGMLPLFHVTGL-GLMLTLQQAGGASVIAAKFD 236 (509)
T ss_dssp EEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSSCC
T ss_pred cEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHH----hhCCCCCcEEEEeCCCcchhHH-HHHHHHHHhCCcEEEecccC
Confidence 334666788888999999999999998887776 4568899999999999999999 55556566666666666889
Q ss_pred HHHHHHHHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeeccccccccccch
Q 042783 246 INSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVL 325 (525)
Q Consensus 246 ~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~ 325 (525)
+..+++.++++++|++.++|+++..+++.. ....+++||.++.+|++ ++.+++.+.+|++++++.||+||++.++
T Consensus 237 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 311 (509)
T 3ivr_A 237 PAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLS 311 (509)
T ss_dssp HHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEE
T ss_pred HHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCcccccccc
Confidence 999999999999999999999999998876 34467899999999987 8889999999999999999999999876
Q ss_pred hcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhcccCCCCceecCceE
Q 042783 326 AMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIG 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TgDl~ 405 (525)
+.... .....++|+|+++++++|+| +++++++.|+.|||+|+|+.++.||+++++.+...| .+|||+|||+|
T Consensus 312 ~~~~~------~~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~ 383 (509)
T 3ivr_A 312 TFAPY------RDRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMG 383 (509)
T ss_dssp EEEEG------GGSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEE
T ss_pred ccCcc------ccCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEE
Confidence 65421 22334589999999999999 579999999999999999999999999999999999 58999999999
Q ss_pred EEcCCCcEEEEccc--cceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCCCCHHHHHHHH
Q 042783 406 YIDDNDELFIVDRL--KELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFI 483 (525)
Q Consensus 406 ~~~~dg~l~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l 483 (525)
++++||++++.||. ||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++...+.+++++++
T Consensus 384 ~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l 463 (509)
T 3ivr_A 384 RFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFV 463 (509)
T ss_dssp EECTTSCEEEEEEC------------------------------------------------------------------
T ss_pred EECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999998888999999998887778889999999
Q ss_pred HhcCCCCCCccEEEEeccCCCCCCCcccHHHHHHHHHhhhc
Q 042783 484 SKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAADYQ 524 (525)
Q Consensus 484 ~~~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~~~~ 524 (525)
+++|+.|++|..|+++++||+|++||++|++|++++.+..+
T Consensus 464 ~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~ 504 (509)
T 3ivr_A 464 ASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGH 504 (509)
T ss_dssp -----------------------------------------
T ss_pred HhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999976543
No 17
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=6.7e-75 Score=596.37 Aligned_cols=484 Identities=18% Similarity=0.244 Sum_probs=409.4
Q ss_pred CCCHHHHHHhhhccCCCccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCCe
Q 042783 31 HLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAI 110 (525)
Q Consensus 31 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 110 (525)
..|+.+.|.++++++|+++|+++. ++++||+||+++++++|++|.++|+++||+|+++++|+++++++++||+++|++
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v 80 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL--GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHA 80 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHCCCCcceecC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 368999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHHcCccEEEECccchHHHhcccCcEEEEec--------------CCCCCCcccccccccCCCC
Q 042783 111 ATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLEEVKIMCID--------------SPPDGCLHFSELTQADEKD 176 (525)
Q Consensus 111 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 176 (525)
++|+++.++.+++.++++.++++++|++.+....+. ....+... .......+...+..+++++
T Consensus 81 ~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTT 157 (521)
T 3l8c_A 81 YIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE---GISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTT 157 (521)
T ss_dssp EEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT---TSEEEEHHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC--
T ss_pred EEecCccccHHHHHHHHHhCCCCEEEecCccccccc---cCcccchhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCC
Confidence 999999999999999999999999999876543221 11121111 0111123445567788888
Q ss_pred CCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecCC---CHHHHHHHH
Q 042783 177 LPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKF---EINSLLQLI 253 (525)
Q Consensus 177 ~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~l 253 (525)
+.||||++||+++.+.+.+..... .+++.++++++...|++|..++ ..++.++..|+++++.+.. ++..+++.+
T Consensus 158 G~PKgV~~sh~~l~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i 234 (521)
T 3l8c_A 158 GQPKGVQISHDNLLSFTNWMIEDA--AFDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFALPKELVADFKQLFTTI 234 (521)
T ss_dssp -CCCEEEEEHHHHHHHHHHHHHCT--TTCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEECCGGGTTCHHHHHHHH
T ss_pred CCCCEEEEehHHHHHHHHHHhhcc--ccCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEEcCHHHhhCHHHHHHHH
Confidence 999999999999998877665521 2557889999999999999988 7788999999999998764 899999999
Q ss_pred HhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeeccccccccccchhcccccCC
Q 042783 254 ERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAMCLSFAK 333 (525)
Q Consensus 254 ~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~ 333 (525)
.++++|++.++|+++..+..........+++||.+++||+++++++.+++.+.++++++++.||+||++..++.......
T Consensus 235 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~ 314 (521)
T 3l8c_A 235 AQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITRE 314 (521)
T ss_dssp HHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHH
T ss_pred HHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccc
Confidence 99999999999999999988877666778999999999999999999999999999999999999999977664322111
Q ss_pred CCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhccc---CCCCceecCceEEEcCC
Q 042783 334 EPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTI---DKEGWLHTGDIGYIDDN 410 (525)
Q Consensus 334 ~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~---~~~~~~~TgDl~~~~~d 410 (525)
........++|+|+++++++|+| +++++++.|+.|||+|+||.++.|||++++.+...| +++|||+|||+|++|+|
T Consensus 315 ~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~d 393 (521)
T 3l8c_A 315 MVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTED 393 (521)
T ss_dssp HHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSS
T ss_pred cccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCC
Confidence 12234567899999999999999 689999999999999999999999999999998877 56789999999999999
Q ss_pred CcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCC-CCCeEEEEEEeCCCCCCC-------HHHHHHH
Q 042783 411 DELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDA-AGEVPVAFVVKSNDSQIT-------EDEIKQF 482 (525)
Q Consensus 411 g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~-------~~~l~~~ 482 (525)
|++++.||+||+||++|++|+|.+||++|.++|+|.+++|++..++. .++.++++|++.++.... .++|+++
T Consensus 394 G~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~ 473 (521)
T 3l8c_A 394 NILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKAS 473 (521)
T ss_dssp SCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHH
T ss_pred CeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999887543 457789999987663321 5689999
Q ss_pred HHhcCCCCCCccEEEEeccCCCCCCCcccHHHHHHHHHhhh
Q 042783 483 ISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAADY 523 (525)
Q Consensus 483 l~~~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~~~ 523 (525)
++++|+.|++|..|+++++||+|++||++|++|++++.+.-
T Consensus 474 l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 474 VKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp SGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC---
T ss_pred HHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCC
Confidence 99999999999999999999999999999999999986653
No 18
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=3e-74 Score=604.27 Aligned_cols=483 Identities=21% Similarity=0.294 Sum_probs=413.3
Q ss_pred CHHHHHHhhhccCCCccEEEeCC----CCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHHHHHhC
Q 042783 33 PLHSYCFENISKVASRPCLINGS----TGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRG 108 (525)
Q Consensus 33 ~l~~~l~~~a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G 108 (525)
++.+.|+++++++||++|+++.. .++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 35678889999999999999731 24799999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCCHHHHHHHHHHcCccEEEECccchH---------HH----hccc--C-cEEEEecCCC------------
Q 042783 109 AIATAANPFFTPAETCKQAKASGAKLIITKASYVD---------KV----KDLE--E-VKIMCIDSPP------------ 160 (525)
Q Consensus 109 ~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~----~~~~--~-~~~~~~~~~~------------ 160 (525)
++++|+++.++.+++.+++++++++++|+++.... .+ .... . ..++.++...
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 236 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW 236 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEE
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCcee
Confidence 99999999999999999999999999999865421 11 1111 1 1233332100
Q ss_pred ---------C-------CCcccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHH
Q 042783 161 ---------D-------GCLHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYAL 224 (525)
Q Consensus 161 ---------~-------~~~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 224 (525)
. ...+...+..++++++.||||++||++++..+...... .++++++|++++.+|++|+.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~---~~~~~~~d~~l~~~~~~~~~g~ 313 (652)
T 1pg4_A 237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY---VFDYHPGDIYWCTADVGWVTGH 313 (652)
T ss_dssp HHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHH
T ss_pred HHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHH---hcCCCCCCEEEEccCCeeeech
Confidence 0 01233456677889999999999999988766432221 3457899999999999999998
Q ss_pred HHHHHHHHHhCCeEEEecC----CCHHHHHHHHHhcCceEeecchHHHHHHHcCCC--CCCcCcccceeEeeecCCCcHH
Q 042783 225 NSIMLCGLRAGAAILIMQK----FEINSLLQLIERYKVTVAPVVPPIVLAIAKSPE--TEKYDLSSIRILKSGAAPLGKE 298 (525)
Q Consensus 225 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gG~~l~~~ 298 (525)
.+.++.+|+.|+++++.+. +++..+++.++++++|+++++|++++.|++... ....++++||.+++|||+++++
T Consensus 314 ~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~ 393 (652)
T 1pg4_A 314 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPE 393 (652)
T ss_dssp HHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHH
T ss_pred HHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHH
Confidence 7778999999999999874 588999999999999999999999999998754 3345689999999999999999
Q ss_pred HHHHHHHHCC--CCeeeccccccccccchhcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEec-
Q 042783 299 LEDAVRIKLP--NAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRG- 375 (525)
Q Consensus 299 ~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g- 375 (525)
+++++.+.++ ++.+++.||+||++..++... ........+++|+|++|++++|+| +++++++.|+.|||+|+|
T Consensus 394 ~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~---~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g~ 469 (652)
T 1pg4_A 394 AWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL---PGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDS 469 (652)
T ss_dssp HHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCC---TTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSC
T ss_pred HHHHHHHHhCCCCCcEEccccCcccccceecCC---CCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEccC
Confidence 9999999882 289999999999997665431 112235678999999999999999 679999999999999999
Q ss_pred -ccccccccCChhhhhccc--CCCCceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEec
Q 042783 376 -DQIMTGYLNDPEATKSTI--DKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVP 452 (525)
Q Consensus 376 -~~~~~gy~~~~~~~~~~~--~~~~~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 452 (525)
|.++.|||++++.+...+ ..+|||+|||+|++|+||+|+|.||+||+||++|++|++.+||++|.+||+|.+++|++
T Consensus 470 ~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg 549 (652)
T 1pg4_A 470 WPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVG 549 (652)
T ss_dssp CTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEE
T ss_pred CCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEE
Confidence 789999999998876654 24789999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCeEEEEEEeCCCCCCC---HHHHHHHHHhcCCCCCCccEEEEeccCCCCCCCcccHHHHHHHHHhh
Q 042783 453 MKDDAAGEVPVAFVVKSNDSQIT---EDEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAAD 522 (525)
Q Consensus 453 ~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~~ 522 (525)
.+++..|+.++++|++.++...+ .++|+++|+++|++|++|..|+++++||+|++||++|++|++.+.++
T Consensus 550 ~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 550 IPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp EEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred EEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 99988889999999988765554 47899999999999999999999999999999999999999999875
No 19
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=5.7e-74 Score=599.73 Aligned_cols=480 Identities=24% Similarity=0.360 Sum_probs=420.1
Q ss_pred CCCCCCCHHHHHHhhhccCCCccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHHHHH
Q 042783 27 YIPKHLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASY 106 (525)
Q Consensus 27 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~ 106 (525)
.++.++|+.++|.++++ ||++|+++. ++++||+||+++++++|++|.++|+++|++|+++++|++++++++|||++
T Consensus 22 ~~~~~~~l~~~~~~~a~--pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~ 97 (617)
T 3rg2_A 22 GYWQDLPLTDILTRHAA--SDSIAVIDG--ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLK 97 (617)
T ss_dssp TSCCCCCTTHHHHTTTT--CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHhhC--CCCeEEecC--CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHh
Confidence 46677899999999988 999999987 79999999999999999999999999999999999999999999999999
Q ss_pred hCCeEeecCCCCCHHHHHHHHHHcCccEEEECccchH--------H-HhcccCcEEEEe-cCC-----------------
Q 042783 107 RGAIATAANPFFTPAETCKQAKASGAKLIITKASYVD--------K-VKDLEEVKIMCI-DSP----------------- 159 (525)
Q Consensus 107 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~--------~-~~~~~~~~~~~~-~~~----------------- 159 (525)
+|++++|+++..+.+++.++++++++++++++..... . .........+.. ...
T Consensus 98 aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (617)
T 3rg2_A 98 LGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFT 177 (617)
T ss_dssp HTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHHHHHSCCSSCC
T ss_pred cCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhhhhcccccccC
Confidence 9999999999999999999999999999999876531 1 111122222222 110
Q ss_pred --CCCCcccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHH-HHHHHHHhCC
Q 042783 160 --PDGCLHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNS-IMLCGLRAGA 236 (525)
Q Consensus 160 --~~~~~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~ 236 (525)
.....+...+..++++++.||||+++|+++.+.+..... .+++.+++++++.+|++|.+++.. .++.+++.|+
T Consensus 178 ~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~ 253 (617)
T 3rg2_A 178 ATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE----ICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGG 253 (617)
T ss_dssp CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH----HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTC
T ss_pred CCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHH----hcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCC
Confidence 011233456777888999999999999999998887766 445889999999999999998843 6899999999
Q ss_pred eEEEecCCCHHHHHHHHHhcCceEeecchHHHHHHHcCCCC--CCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeec
Q 042783 237 AILIMQKFEINSLLQLIERYKVTVAPVVPPIVLAIAKSPET--EKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQ 314 (525)
Q Consensus 237 ~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~ 314 (525)
++++.+..++..+++.++++++|++.++|+++..+++.... ....+++||.+++|||++++++.+++.+.+ ++++++
T Consensus 254 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~ 332 (617)
T 3rg2_A 254 TVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQ 332 (617)
T ss_dssp EEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEE
Confidence 99999989999999999999999999999999998775432 223688999999999999999999999998 899999
Q ss_pred cccccccccchhcccccCCCCcccCCCcccccc-CCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhccc
Q 042783 315 GYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVV-RNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTI 393 (525)
Q Consensus 315 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~ 393 (525)
.||+||++..++.. .........++|+|+ ++.+++|+| +++++++.|+.|||+|+|+.+++||+++++.|...|
T Consensus 333 ~YG~tE~~~~~~~~----~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f 407 (617)
T 3rg2_A 333 VFGMAEGLVNYTRL----DDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAF 407 (617)
T ss_dssp EEEETTEEEEECCT----TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHB
T ss_pred EeccCcceeecccC----CCcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhcc
Confidence 99999998654432 111222345789997 788999999 789999999999999999999999999999999999
Q ss_pred CCCCceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCC
Q 042783 394 DKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQ 473 (525)
Q Consensus 394 ~~~~~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 473 (525)
..++||+|||+|++++||+|+|+||+||+||++|++|+|.+||+.|.+||+|.+++|++..++..++.++++++..+ .
T Consensus 408 ~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~ 485 (617)
T 3rg2_A 408 DANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--P 485 (617)
T ss_dssp CTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--C
T ss_pred CCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--C
Confidence 88999999999999999999999999999999999999999999999999999999999998888889999998765 4
Q ss_pred CCHHHHHHHHHh-cCCCCCCccEEEEeccCCCCCCCcccHHHHHHHHHhh
Q 042783 474 ITEDEIKQFISK-QVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAAD 522 (525)
Q Consensus 474 ~~~~~l~~~l~~-~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~~ 522 (525)
.+.+++++++++ .||.|++|..++++++||+|++||+||++|++.+.+.
T Consensus 486 ~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 535 (617)
T 3rg2_A 486 LRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535 (617)
T ss_dssp CCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhcc
Confidence 778999999998 6999999999999999999999999999999988654
No 20
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1e-75 Score=607.65 Aligned_cols=475 Identities=20% Similarity=0.279 Sum_probs=321.7
Q ss_pred CCCCCCHHHHHHhhhccCCCccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHHHHHh
Q 042783 28 IPKHLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYR 107 (525)
Q Consensus 28 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~ 107 (525)
.+...++.++|.++++++||++|+++. ++++||+||+++++++|++|.++|+++||+|+++++|++++++++|||+++
T Consensus 71 ~~~~~~l~~~l~~~a~~~pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 148 (570)
T 4gr5_A 71 APAGACVHELFEAQAARAPDAVALLHE--ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKA 148 (570)
T ss_dssp CCCSCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CCccCCHHHHHHHHHHHCCCCeEEECC--CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 345679999999999999999999987 789999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCCHHHHHHHHHHcCccEEEECccchHHHhcccCcEEEEecC------------CCCCCcccccccccCCC
Q 042783 108 GAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLEEVKIMCIDS------------PPDGCLHFSELTQADEK 175 (525)
Q Consensus 108 G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 175 (525)
|++++|+++.++.+++.+++++++++++|++......+... ..+...+ ......+...+..++++
T Consensus 149 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGT 225 (570)
T 4gr5_A 149 GGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGT---TTLYVEDEAASDAPAGNLATGVGPEDVACVMFTSGS 225 (570)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSS---EEEECCC-------CCCCCCCCCTTSEEEEECCSSC
T ss_pred CCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCC---cceeeeccccccccccccCCCCCCCCeEEEEECCcC
Confidence 99999999999999999999999999999998765443321 1111111 00112344557778889
Q ss_pred CCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEec--CCCHHHHHHHH
Q 042783 176 DLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQ--KFEINSLLQLI 253 (525)
Q Consensus 176 ~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l 253 (525)
++.||||++||+++.+.+.. .. .++++++|++++.+|++|..+. ..++.+++.|+++++.+ .+++..+++.+
T Consensus 226 TG~PKgV~~th~~l~~~~~~-~~----~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i 299 (570)
T 4gr5_A 226 TGRPKGVMSPHRALTGTYLG-QD----YAGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQSGQNPDPLEIGELV 299 (570)
T ss_dssp CSSCCCEEEEHHHHHHHHSS-CC----SSCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEECSSSSCCHHHHHHHH
T ss_pred CCCCeEEEEecHHHHHHHHh-hh----hcCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEcCCccCCHHHHHHHH
Confidence 99999999999999766543 12 4568899999999999997776 67899999999999986 46899999999
Q ss_pred HhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeeccccccccccchhcccccCC
Q 042783 254 ERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAMCLSFAK 333 (525)
Q Consensus 254 ~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~ 333 (525)
+++++|++.++|+++..|++... ..+++||.+++||++++.++.+++.+.++++++++.||+||++.+++......
T Consensus 300 ~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~- 375 (570)
T 4gr5_A 300 ARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVA- 375 (570)
T ss_dssp HHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCG-
T ss_pred HHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecc-
Confidence 99999999999999999987543 35789999999999999999999999998999999999999987766432111
Q ss_pred CCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhcccCC--------CCceecCceE
Q 042783 334 EPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDK--------EGWLHTGDIG 405 (525)
Q Consensus 334 ~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~--------~~~~~TgDl~ 405 (525)
........++|+|+++++++|+| +++++++.|+.|||+|+|+.++.||+++++.|...|.. +|||+|||+|
T Consensus 376 ~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg 454 (570)
T 4gr5_A 376 GDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLA 454 (570)
T ss_dssp GGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEE
T ss_pred cccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeE
Confidence 12233456799999999999999 67999999999999999999999999999999888733 3799999999
Q ss_pred EEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCC-CCCCHHHHHHHHH
Q 042783 406 YIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSND-SQITEDEIKQFIS 484 (525)
Q Consensus 406 ~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~l~ 484 (525)
++|+||+|+|+||+||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.++++|+...+ ...+.++|+++|+
T Consensus 455 ~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~ 534 (570)
T 4gr5_A 455 RRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVA 534 (570)
T ss_dssp EECTTSCEEEEEC-------------------------------------------------------------------
T ss_pred EECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888888889999887543 3567789999999
Q ss_pred hcCCCCCCccEEEEeccCCCCCCCcccHHHHHHH
Q 042783 485 KQVVFYKRINRVFFIDAIPKAPSGKILRKELRAK 518 (525)
Q Consensus 485 ~~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~ 518 (525)
++|+.|++|..++++++||+|++||++|++|++.
T Consensus 535 ~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 535 EALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ----------------------------------
T ss_pred hhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 9999999999999999999999999999999864
No 21
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.2e-73 Score=590.71 Aligned_cols=482 Identities=21% Similarity=0.303 Sum_probs=413.3
Q ss_pred CCCCCCC-HHHHHHhhhcc-----CCCccEEEeCC-C--CCeEeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEECCCchh
Q 042783 27 YIPKHLP-LHSYCFENISK-----VASRPCLINGS-T--GDVYTYGEVELTARKIASGLNKL-GIGQRDVIMLLLPNVPE 96 (525)
Q Consensus 27 ~~~~~~~-l~~~l~~~a~~-----~p~~~a~~~~~-~--~~~~Ty~el~~~~~~~a~~L~~~-gi~~g~~V~i~~~~~~~ 96 (525)
..|..++ +.++|.++++. +|+++|+++.+ + ++++||+||.++++++|++|.+. |+++||+|+++++|+++
T Consensus 32 ~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e 111 (570)
T 3c5e_A 32 EVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE 111 (570)
T ss_dssp CCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH
T ss_pred cCCccccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH
Confidence 3444455 46889988888 99999998732 1 37999999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECccchHHHhc----ccCc-EEEEecCC------------
Q 042783 97 FVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKD----LEEV-KIMCIDSP------------ 159 (525)
Q Consensus 97 ~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~----~~~~-~~~~~~~~------------ 159 (525)
+++++|||+++|++++|+++.++.+++.+++++++++++|++......+.. .+.. .++.++..
T Consensus 112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (570)
T 3c5e_A 112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLL 191 (570)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHH
T ss_pred HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHh
Confidence 999999999999999999999999999999999999999999877655433 1222 23333220
Q ss_pred ----------CCCCcccccccccCCCCCCCceeEcchHHHHH-HHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHH
Q 042783 160 ----------PDGCLHFSELTQADEKDLPHVGVMLTHKGLVT-SVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIM 228 (525)
Q Consensus 160 ----------~~~~~~~~~~~~~~~~~~~~~~v~~th~~l~~-~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 228 (525)
.....+...+..++++++.||||++||+.+.+ ..... . .++++++|++++.+|++|.+++...+
T Consensus 192 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~----~~~~~~~d~~~~~~p~~~~~~~~~~~ 266 (570)
T 3c5e_A 192 NEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-G----WTGLQASDIMWTISDTGWILNILCSL 266 (570)
T ss_dssp HHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-T----TTSCCTTCEEEECCCTTSHHHHHHTT
T ss_pred hcccccccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-h----hcCCCCCceEEEcCchHHHHHHHHHH
Confidence 01112334466778888999999999994332 33332 3 45688999999999999999986678
Q ss_pred HHHHHhCCeEEEec--CCCHHHHHHHHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHH
Q 042783 229 LCGLRAGAAILIMQ--KFEINSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIK 306 (525)
Q Consensus 229 ~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~ 306 (525)
+.++..|+++++.+ .+++..+++.++++++|+++++|++++.|++.. ....++++||.+++||+++++++.++|.+.
T Consensus 267 ~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~ 345 (570)
T 3c5e_A 267 MEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQ 345 (570)
T ss_dssp HHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred HHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHH
Confidence 99999999999986 689999999999999999999999999998863 334467899999999999999999999998
Q ss_pred CCCCeeeccccccccccchhcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEe-----ccccccc
Q 042783 307 LPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIR-----GDQIMTG 381 (525)
Q Consensus 307 ~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~-----g~~~~~g 381 (525)
+ ++++++.||+||++..++.. .......+++|+|+++++++|+| +++++++.|+.|||+++ |+.++.|
T Consensus 346 ~-g~~i~~~YG~TE~~~~~~~~-----~~~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~G 418 (570)
T 3c5e_A 346 T-GLDIRESYGQTETGLTCMVS-----KTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSG 418 (570)
T ss_dssp H-SCCCEEEEEETTTEEEEECC-----TTSCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCE
T ss_pred h-CCchhhccchhhcccceecC-----cccccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhcc
Confidence 8 89999999999998665432 12234678999999999999999 67999999999999999 9999999
Q ss_pred ccCChhhhhcccCCCCceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCe
Q 042783 382 YLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEV 461 (525)
Q Consensus 382 y~~~~~~~~~~~~~~~~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~ 461 (525)
|+++++.+...| .++||+|||+|++++||+|+|.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.
T Consensus 419 Y~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~ 497 (570)
T 3c5e_A 419 YVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEV 497 (570)
T ss_dssp ETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEE
T ss_pred ccCChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeE
Confidence 999999999888 5899999999999999999999999999999999999999999999999999999999999888889
Q ss_pred EEEEEEeCCCC--C---CCHHHHHHHHHhcCCCCCCccEEEEeccCCCCCCCcccHHHHHHHHHhh
Q 042783 462 PVAFVVKSNDS--Q---ITEDEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAAD 522 (525)
Q Consensus 462 ~~~~v~~~~~~--~---~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~~ 522 (525)
++++|++.++. . ...++|+++++++|+.|++|..|+++++||+|++||++|++|++.+.+.
T Consensus 498 ~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 498 VKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKM 563 (570)
T ss_dssp EEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC-
T ss_pred EEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhh
Confidence 99999876543 1 1257899999999999999999999999999999999999999988543
No 22
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=5.2e-75 Score=604.85 Aligned_cols=476 Identities=17% Similarity=0.169 Sum_probs=399.1
Q ss_pred CCCCCCCCCCHHHHHHhhhccCCCccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHH
Q 042783 24 PDIYIPKHLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLG 103 (525)
Q Consensus 24 ~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA 103 (525)
.....+.+.|+.++|.++++++||++|+++. ++++||+||.++++++|++|.++|+++|++|+++++|++++++++||
T Consensus 19 ~~~~~~~~~tl~~~~~~~a~~~Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~la 96 (620)
T 4dg8_A 19 SLLDLYAHPTVVARFSEMAALHPHREAIRDR--FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLA 96 (620)
T ss_dssp STTSGGGSCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHHHHhCCCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 3344556689999999999999999999987 78999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECccchHHHhcccCcEEEEecC----------CCCCCcccccccccC
Q 042783 104 ASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLEEVKIMCIDS----------PPDGCLHFSELTQAD 173 (525)
Q Consensus 104 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 173 (525)
|+++|++++|+++.++.+++.++++++++++++++.......... ....... ......+...+..++
T Consensus 97 ilkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTS 173 (620)
T 4dg8_A 97 ILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGL---PCVPVRHLPAAPASVARPCFAADQIAYINFSS 173 (620)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTS---CEEEGGGCCCCCCCSSCCCCCTTSEEEEEEEB
T ss_pred HHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccccCC---ceeeeccCCcCCccccCCCCCCCCeEEEEECC
Confidence 999999999999999999999999999999999765433221111 1111110 011123455677788
Q ss_pred CCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEec--CCCHHHHHH
Q 042783 174 EKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQ--KFEINSLLQ 251 (525)
Q Consensus 174 ~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~ 251 (525)
++++.||||+++|+++.+.+.. .. .+++.+++++++.+|++|..++ ..++.+++.|+++++.+ .+++..+++
T Consensus 174 GSTG~PKgV~~th~~l~~~~~~-~~----~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~ 247 (620)
T 4dg8_A 174 GTTGRPKAIACTHAGITRLCLG-QS----FLAFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGCCVLNDLGPLDPGVLRQ 247 (620)
T ss_dssp SSSSSCEEEEEEHHHHHHHHSS-CG----GGTTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCSSSCCHHHHHH
T ss_pred CccccCeEEEEchHHHHHHHHH-HH----hhCCCCCCEEEEECccCHHHHH-HHHHHHHhcCCEEEeCccccCCHHHHHH
Confidence 9999999999999999876644 22 4568899999999999999998 77999999999999964 579999999
Q ss_pred HHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeeccccccccccchhccccc
Q 042783 252 LIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAMCLSF 331 (525)
Q Consensus 252 ~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~ 331 (525)
.++++++|+++++|+++..|++.. ...+++||.+++|||+++++..+++.+.++++++++.||+||++.+++....
T Consensus 248 ~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~- 323 (620)
T 4dg8_A 248 LIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVV- 323 (620)
T ss_dssp HHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEEC-
T ss_pred HHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEec-
Confidence 999999999999999999998643 3457899999999999999999999888889999999999999977654321
Q ss_pred CCCCcccCCCccccccCCceEEEEcCCCCCC-CCCCCCeEEEEecccccccccCChhhhhcccCCC-------CceecCc
Q 042783 332 AKEPFEIKAGACGTVVRNAEMKIVDPETGAS-LPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKE-------GWLHTGD 403 (525)
Q Consensus 332 ~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~-~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~-------~~~~TgD 403 (525)
..........++|+|+++++++|+|+ ++++ ++.|+.|||+|+|+.+++||+++++.|...|..+ +||+|||
T Consensus 324 ~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGD 402 (620)
T 4dg8_A 324 TDDDLEEDDIPIGKAIAGTAVLLLDE-HGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGD 402 (620)
T ss_dssp CTGGGGSSSCCCBEECTTEEEEEECT-TSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEE
T ss_pred cccccCCCCCCceecccCcEEEEECc-cCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCC
Confidence 11223345678999999999999995 5555 8999999999999999999999999999888432 7999999
Q ss_pred eEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCCCCHHHHHHHH
Q 042783 404 IGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFI 483 (525)
Q Consensus 404 l~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l 483 (525)
+|++++||+|+|+||+||+||++|++|+|.+||+.|.+||+|.+++|++..++..+.. +++++... .++++++
T Consensus 403 l~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~l-v~~~~~~~------~~~~~~l 475 (620)
T 4dg8_A 403 RARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQL-LCAWTGKA------DASPQAL 475 (620)
T ss_dssp EEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEE-EEEEEECT------TCCCHHH
T ss_pred EEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEE-EEEEecCh------HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887644444 44444322 2234667
Q ss_pred HhcCCCCCCccEEEEeccCCCCCCCcccHHHHHHHHHhh
Q 042783 484 SKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAAD 522 (525)
Q Consensus 484 ~~~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~~ 522 (525)
+++||.|++|..++++++||+|++||++|++|++.|.+.
T Consensus 476 ~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 476 LRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp HHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred HHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence 788999999999999999999999999999999887554
No 23
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2.5e-73 Score=585.50 Aligned_cols=475 Identities=25% Similarity=0.373 Sum_probs=398.0
Q ss_pred CCCCCC-HHHHHHhhhccCCCccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHHHHH
Q 042783 28 IPKHLP-LHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASY 106 (525)
Q Consensus 28 ~~~~~~-l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~ 106 (525)
.|..++ +.++|.++++ +|+++|+++. ++++||+||+++++++|++|.++|+++||+|+++++|++++++++|||++
T Consensus 19 ~p~~~~~~~~~l~~~~~-~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 95 (529)
T 2v7b_A 19 PPALFNFAAYLFRLNET-RAGKTAYIDD--TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALY 95 (529)
T ss_dssp ---CCCHHHHHHHHTGG-GTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHH
T ss_pred CccceeHHHHHHHhhhc-cCCceEEEeC--CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 344455 7889999999 9999999986 78999999999999999999999999999999999999999999999999
Q ss_pred hCCeEeecCCCCCHHHHHHHHHHcCccEEEECccchHHHhcc----cC--cEEEEecCCC--------------------
Q 042783 107 RGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDL----EE--VKIMCIDSPP-------------------- 160 (525)
Q Consensus 107 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~----~~--~~~~~~~~~~-------------------- 160 (525)
+|++++|+++.++.+++.+++++++++++|++......+... .. ..++..+...
T Consensus 96 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (529)
T 2v7b_A 96 AGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAA 175 (529)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCCCS
T ss_pred cCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCCcc
Confidence 999999999999999999999999999999998765544322 11 2222222100
Q ss_pred ----CCCcccccccccCCCCCCCceeEcchHHH-HHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhC
Q 042783 161 ----DGCLHFSELTQADEKDLPHVGVMLTHKGL-VTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAG 235 (525)
Q Consensus 161 ----~~~~~~~~~~~~~~~~~~~~~v~~th~~l-~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G 235 (525)
....+...+..++++++.||||++||+++ .+....... .+++.++|++++.+|++|.+++...++.++..|
T Consensus 176 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G 251 (529)
T 2v7b_A 176 KAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKP----ILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVG 251 (529)
T ss_dssp SCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCC----CCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHT
T ss_pred cccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhh----ccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Confidence 01123334566788888999999999999 555444333 456889999999999999999966788999999
Q ss_pred CeEEEe-cCCCHHHHHHHHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeec
Q 042783 236 AAILIM-QKFEINSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQ 314 (525)
Q Consensus 236 ~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~ 314 (525)
+++++. +.+++..+++.++++++|+++++|+++..+++..........+||.+++||+++++++.+++.+.+ ++++++
T Consensus 252 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~ 330 (529)
T 2v7b_A 252 ATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILD 330 (529)
T ss_dssp CEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEE
T ss_pred cEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceee
Confidence 999987 568999999999999999999999999999887654433234899999999999999999999988 899999
Q ss_pred cccccccccchhcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhcccC
Q 042783 315 GYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTID 394 (525)
Q Consensus 315 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~ 394 (525)
.||+||++.+++.. .......+++|+|+++++++|+| +++++++.|+.|||+|+|+.++.||+++++.+...|
T Consensus 331 ~YG~TE~~~~~~~~-----~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f- 403 (529)
T 2v7b_A 331 GIGSTEMLHIFLSN-----RAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF- 403 (529)
T ss_dssp EEECTTTSSEEEEC-----CTTCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-
T ss_pred eEchhhcCceeecc-----ccCCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-
Confidence 99999997655433 12224678899999999999999 689999999999999999999999999999999888
Q ss_pred CCCceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCCC
Q 042783 395 KEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQI 474 (525)
Q Consensus 395 ~~~~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 474 (525)
.++||+|||+|++++||++++.||.||+||++|++|+|.+||+.|.++|+|.+++|++. ++..++.++++|++.++...
T Consensus 404 ~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~ 482 (529)
T 2v7b_A 404 LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAP 482 (529)
T ss_dssp ETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCC
T ss_pred hcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCc
Confidence 48999999999999999999999999999999999999999999999999999999998 66667788899988765321
Q ss_pred ---CHHHHHHHHHhcCCCCCCccEEEEeccCCCCCCCcccHHHHHHH
Q 042783 475 ---TEDEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAK 518 (525)
Q Consensus 475 ---~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~ 518 (525)
..++++++++++|+.|++|..++++++||+|++||++|++|+++
T Consensus 483 ~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 529 (529)
T 2v7b_A 483 SEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529 (529)
T ss_dssp CHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC-
T ss_pred chhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhhC
Confidence 24689999999999999999999999999999999999999863
No 24
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=3.4e-73 Score=596.31 Aligned_cols=485 Identities=21% Similarity=0.290 Sum_probs=408.3
Q ss_pred CHHHHHHhhhccCCCccEEEeC----CCCCeEeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEECCCchhHHHHHHHHHHh
Q 042783 33 PLHSYCFENISKVASRPCLING----STGDVYTYGEVELTARKIASGLN-KLGIGQRDVIMLLLPNVPEFVFSFLGASYR 107 (525)
Q Consensus 33 ~l~~~l~~~a~~~p~~~a~~~~----~~~~~~Ty~el~~~~~~~a~~L~-~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~ 107 (525)
++.+.|+++++++|+++|+++. ..++++||+||+++++++|++|+ ++|+++||+|+++++|++++++++|||+++
T Consensus 83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~ 162 (663)
T 1ry2_A 83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 162 (663)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 3567888999999999999973 13589999999999999999999 999999999999999999999999999999
Q ss_pred CCeEeecCCCCCHHHHHHHHHHcCccEEEECccchH---------HH----hcccCc-EEEEecCCC-------------
Q 042783 108 GAIATAANPFFTPAETCKQAKASGAKLIITKASYVD---------KV----KDLEEV-KIMCIDSPP------------- 160 (525)
Q Consensus 108 G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~----~~~~~~-~~~~~~~~~------------- 160 (525)
|++++|+++.++.+++.+++++++++++|+++.... .+ ...+.. .++.++...
T Consensus 163 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 242 (663)
T 1ry2_A 163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLD 242 (663)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEE
T ss_pred CCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCcccc
Confidence 999999999999999999999999999999876421 11 111222 233322110
Q ss_pred ----------------CCCcccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHH
Q 042783 161 ----------------DGCLHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYAL 224 (525)
Q Consensus 161 ----------------~~~~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 224 (525)
....+...+..++++++.||||+++|++++..+...... .++++++|++++.+|++|+.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~g~ 319 (663)
T 1ry2_A 243 WATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY---TFDTHQEDVFFTAGDIGWITGH 319 (663)
T ss_dssp HHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHH---HSCCCSSCEEEECSCTTSHHHH
T ss_pred HHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHH---hcCCCCCcEEEEcCCcHHhhhh
Confidence 001223446667888999999999999988766433221 3457899999999999999998
Q ss_pred HHHHHHHHHhCCeEEEecC----CCHHHHHHHHHhcCceEeecchHHHHHHHcCCC--CCCcCcccceeEeeecCCCcHH
Q 042783 225 NSIMLCGLRAGAAILIMQK----FEINSLLQLIERYKVTVAPVVPPIVLAIAKSPE--TEKYDLSSIRILKSGAAPLGKE 298 (525)
Q Consensus 225 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gG~~l~~~ 298 (525)
.+.++.+|+.|+++++.+. +++..+++.++++++|+++++|++++.|.+... ....++++||.+++|||+++++
T Consensus 320 ~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~ 399 (663)
T 1ry2_A 320 TYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAE 399 (663)
T ss_dssp HHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHH
T ss_pred HHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHH
Confidence 7778999999999999864 588999999999999999999999999988764 2345789999999999999999
Q ss_pred HHHHHHHHCC--CCeeeccccccccccchhcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCC-CCCeEEEEec
Q 042783 299 LEDAVRIKLP--NAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPT-NKPGEICIRG 375 (525)
Q Consensus 299 ~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~-g~~Gel~v~g 375 (525)
+++++.+.++ ++.+++.||+||++..++..... .......+++|+|++|++++|+|++++++++. |+.|||+++|
T Consensus 400 ~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g 477 (663)
T 1ry2_A 400 VWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAG--GVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKA 477 (663)
T ss_dssp HHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTT--TCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESS
T ss_pred HHHHHHHHhCCCCceEEEeECCccccCeeeccCCC--CCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEec
Confidence 9999999882 38999999999998766543110 12245678999999999999999658999988 9999999999
Q ss_pred --ccccccccCChhhhhcccC--CCCceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEe
Q 042783 376 --DQIMTGYLNDPEATKSTID--KEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVV 451 (525)
Q Consensus 376 --~~~~~gy~~~~~~~~~~~~--~~~~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 451 (525)
|.++.|||++++.+...+. .+|||+|||+|++++||+++|.||+||+||++|++|++.+||++|.+||+|.+++|+
T Consensus 478 ~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vv 557 (663)
T 1ry2_A 478 AWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVV 557 (663)
T ss_dssp CCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEE
T ss_pred CCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEE
Confidence 5899999999988876652 378999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCeEEEEEEeCCCCC---C-C------HHHHHHHHHhcCCCCCCccEEEEeccCCCCCCCcccHHHHHHHHHh
Q 042783 452 PMKDDAAGEVPVAFVVKSNDSQ---I-T------EDEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAA 521 (525)
Q Consensus 452 ~~~~~~~~~~~~~~v~~~~~~~---~-~------~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~ 521 (525)
+.+++..|+.++++|++.++.. . + .++|+++++++|++|++|..|+++++||+|++||++|++|++.+.+
T Consensus 558 g~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 637 (663)
T 1ry2_A 558 GFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAG 637 (663)
T ss_dssp CCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred EEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcC
Confidence 9999888899999999876543 2 1 5789999999999999999999999999999999999999998866
Q ss_pred h
Q 042783 522 D 522 (525)
Q Consensus 522 ~ 522 (525)
+
T Consensus 638 ~ 638 (663)
T 1ry2_A 638 E 638 (663)
T ss_dssp -
T ss_pred C
Confidence 4
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.8e-73 Score=580.49 Aligned_cols=465 Identities=23% Similarity=0.356 Sum_probs=383.9
Q ss_pred CCHHHHHHhhhccCCCccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCCeE
Q 042783 32 LPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIA 111 (525)
Q Consensus 32 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 111 (525)
+||.++|.++++++|+++|+++. ++++||+||+++++++|++|.++ +||+|+++++|+++++++++||+++|+++
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~ 75 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDG--QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEI 75 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeC--CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 57888999999999999999987 79999999999999999999986 89999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHHcCccEEEECccchHHHhcc---cCcEEEE----------------ec---------C-----
Q 042783 112 TAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDL---EEVKIMC----------------ID---------S----- 158 (525)
Q Consensus 112 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~---~~~~~~~----------------~~---------~----- 158 (525)
+|+++.++.+++.+++++++++++|++.......... ....... .. .
T Consensus 76 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (501)
T 3ipl_A 76 AMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNI 155 (501)
T ss_dssp EECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CCHHHH
T ss_pred EecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCCcccc
Confidence 9999999999999999999999999987654332111 0000000 00 0
Q ss_pred --CCCCCcccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCC
Q 042783 159 --PPDGCLHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGA 236 (525)
Q Consensus 159 --~~~~~~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~ 236 (525)
......+...+..++++++.||||.+||+++.+.+..... .++++++|++++.+|++|.+|+ ..++.+++.|+
T Consensus 156 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~ 230 (501)
T 3ipl_A 156 LNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE----SLGFDRDTNWLSVLPIYHISGL-SVLLRAVIEGF 230 (501)
T ss_dssp TCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH----HTCCCTTCEEEECSCTTSHHHH-HHHHHHHHHTC
T ss_pred cccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH----hhCCCccCEEEEeCcHHHHHHH-HHHHHHHHcCc
Confidence 0011223445677888889999999999999998887766 4568899999999999999999 66899999999
Q ss_pred eEEEecCCCHHHHHHHHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeeccc
Q 042783 237 AILIMQKFEINSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGY 316 (525)
Q Consensus 237 ~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~y 316 (525)
++++.+++++..+++.++++++|++.++|+++..|.+...... .+||.+++||+++++++.+++.+ + ++++++.|
T Consensus 231 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~-~-~~~~~~~Y 305 (501)
T 3ipl_A 231 TVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQ-Y-NLPIYNSF 305 (501)
T ss_dssp EEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHH-T-TCCEEEEE
T ss_pred eEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHH-h-CCCEeccc
Confidence 9999999999999999999999999999999999988765433 28999999999999999999987 4 89999999
Q ss_pred cccccccchhcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhcccCCC
Q 042783 317 GMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKE 396 (525)
Q Consensus 317 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~ 396 (525)
|+||++..++... ........+++|+|+++++++++|++ .|+.|||+|+|+.++.||+++++.+.. + .+
T Consensus 306 G~TE~~~~~~~~~---~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~ 374 (501)
T 3ipl_A 306 GMTETCSQFLTAT---PEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-EN 374 (501)
T ss_dssp EEGGGTEEEEEEC---HHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ET
T ss_pred cccccccceeecC---ccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cC
Confidence 9999986554331 11123467789999999999999953 467799999999999999999998877 5 68
Q ss_pred CceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCCCCH
Q 042783 397 GWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITE 476 (525)
Q Consensus 397 ~~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 476 (525)
|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++.. ...+.
T Consensus 375 g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~ 452 (501)
T 3ipl_A 375 GYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISK 452 (501)
T ss_dssp TEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCH
T ss_pred CceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999998888889988864 45788
Q ss_pred HHHHHHHHhcCCCCCCccEEEEeccCCCCCCCcccHHHHHHHHHhhhc
Q 042783 477 DEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAADYQ 524 (525)
Q Consensus 477 ~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~~~~ 524 (525)
++++++++++|+.|++|..|+++++||+|++||++|++|++...++-+
T Consensus 453 ~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~~~ 500 (501)
T 3ipl_A 453 AQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHHHH 500 (501)
T ss_dssp HHHHHHHHHHSCGGGSCSEEEECSSCC---------------------
T ss_pred HHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccccC
Confidence 999999999999999999999999999999999999999998876643
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=7.4e-74 Score=584.55 Aligned_cols=467 Identities=24% Similarity=0.338 Sum_probs=388.3
Q ss_pred CCCHHHHHHhhhccCCC-ccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCC
Q 042783 31 HLPLHSYCFENISKVAS-RPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGA 109 (525)
Q Consensus 31 ~~~l~~~l~~~a~~~p~-~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 109 (525)
.+|+.+.|.++++++|+ ++|+++. ++++||+||.++++++|++|. .|++|+++++|++++++++|||+++|+
T Consensus 21 ~~tl~~~l~~~a~~~p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga 93 (505)
T 3nyq_A 21 MSSLFPALSPAPTGAPADRPALRFG--ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGV 93 (505)
T ss_dssp ---CCTTTSSCCCSGGGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTC
T ss_pred cchhHHHHHHHHHhCCCCCeEEEEC--CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 46788999999999887 9999987 899999999999999999774 488999999999999999999999999
Q ss_pred eEeecCCCCCHHHHHHHHHHcCccEEEECccchHHHhcccCcEEEEecCC--------CCCCcccccccccCCCCCCCce
Q 042783 110 IATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLEEVKIMCIDSP--------PDGCLHFSELTQADEKDLPHVG 181 (525)
Q Consensus 110 ~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 181 (525)
+++|+++.++.+++.+++++++++++|++...... ........+.++.. .....+...+..++++++.|||
T Consensus 94 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKg 172 (505)
T 3nyq_A 94 AAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP-PALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKG 172 (505)
T ss_dssp CEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC-GGGTTSEEEECCTTCCCCCCCCCCCTTSEEEEEEECCSSSSCEE
T ss_pred EEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc-hhhccccccccccccccCCCCCCCCCCCeEEEEeCCCCcCCCCe
Confidence 99999999999999999999999999998652110 11122233332211 1112344557778888999999
Q ss_pred eEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHhcCceEe
Q 042783 182 VMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEINSLLQLIERYKVTVA 261 (525)
Q Consensus 182 v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~ 261 (525)
|++||+++.+.+..... .++++++|++++.+|++|..|+...++.++..|+++++.+.+++..+++.+ ++++|++
T Consensus 173 V~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~ 247 (505)
T 3nyq_A 173 AVIPRRALATTLDALAD----AWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATML 247 (505)
T ss_dssp EEEEHHHHHHHHHHHHH----HHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEE
T ss_pred EEEeHHHHHHHHHHHHH----HhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEE
Confidence 99999999998887766 445889999999999999999877899999999999999999999999999 8899999
Q ss_pred ecchHHHHHHHcCCCCC---CcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeeccccccccccchhcccccCCCCccc
Q 042783 262 PVVPPIVLAIAKSPETE---KYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEI 338 (525)
Q Consensus 262 ~~~P~~l~~l~~~~~~~---~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~ 338 (525)
+++|+++..+++..... ...++++|.+++||+++++++.+++.+.+ ++++++.||+||++..++.. .....
T Consensus 248 ~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~-----~~~~~ 321 (505)
T 3nyq_A 248 FGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVR-----ADGEP 321 (505)
T ss_dssp EECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECC-----TTSCC
T ss_pred EehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccC-----CCCCC
Confidence 99999999998743222 23567899999999999999999999988 89999999999998766543 22344
Q ss_pred CCCccccccCCceEEEEcCCCCCCCCC---CCCeEEEEecccccccccCChhhhhcccCCCCceecCceEEEcCCCcEEE
Q 042783 339 KAGACGTVVRNAEMKIVDPETGASLPT---NKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFI 415 (525)
Q Consensus 339 ~~~~~G~p~~~~~~~i~~~~~~~~~~~---g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TgDl~~~~~dg~l~~ 415 (525)
..+++|+|+++++++|+| +++++++. |+.|||+|+|+.++.||+++++.+...|..+|||+|||+|++++||++++
T Consensus 322 ~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~ 400 (505)
T 3nyq_A 322 RAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRI 400 (505)
T ss_dssp CTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEE
T ss_pred CCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEE
Confidence 678899999999999999 67888776 89999999999999999999999999998899999999999999999999
Q ss_pred Eccc-cceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCC-CCCCCHHHHHHHHHhcCCCCCCc
Q 042783 416 VDRL-KELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSN-DSQITEDEIKQFISKQVVFYKRI 493 (525)
Q Consensus 416 ~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~l~~~l~~~~~p 493 (525)
.||+ ||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.+ +...+.++|+++++++|+.|++|
T Consensus 401 ~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P 480 (505)
T 3nyq_A 401 VGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRP 480 (505)
T ss_dssp EEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSC
T ss_pred eCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCc
Confidence 9998 589999999999999999999999999999999999988999999999875 45677899999999999999999
Q ss_pred cEEEEeccCCCCCCCcccHHHHHH
Q 042783 494 NRVFFIDAIPKAPSGKILRKELRA 517 (525)
Q Consensus 494 ~~i~~~~~~P~t~~GKv~r~~l~~ 517 (525)
..|+++++||+|++||++|++|++
T Consensus 481 ~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 481 RVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp SEEEECSCCCC-------------
T ss_pred cEEEEECCCCCCCCcCeeHHhhcc
Confidence 999999999999999999999986
No 27
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.2e-70 Score=618.20 Aligned_cols=488 Identities=20% Similarity=0.265 Sum_probs=423.0
Q ss_pred ceeeccCCCCCCCCCCCCHHHHHHhhhccCCCccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCch
Q 042783 16 EIIFRSKLPDIYIPKHLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVP 95 (525)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~ 95 (525)
..+..|+.+....+. .++.++|.++++++|+++|+++. ++++||+||.++++++|++|.++|+++|++|+++++|++
T Consensus 449 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~ 525 (1304)
T 2vsq_A 449 FLLTGLNPPAQAHET-KPLTYWFKEAVNANPDAPALTYS--GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSL 525 (1304)
T ss_dssp HHHTTTSCCCCCCCC-CCHHHHHHHHHHHCTTSEEEESS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSH
T ss_pred HHHHhcCCCCCCCCC-CCHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCH
Confidence 345566666666665 79999999999999999999986 799999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECccchHHHhcccC-cEEEEecCC------------CCC
Q 042783 96 EFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLEE-VKIMCIDSP------------PDG 162 (525)
Q Consensus 96 ~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~------------~~~ 162 (525)
+++++++||+++|++++|++|.++.+++.++++++++++++++.........++. ...+.+++. ...
T Consensus 526 ~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (1304)
T 2vsq_A 526 ELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAID 605 (1304)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCGGGGGSCSSCCCCCCC
T ss_pred HHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccccccccccCCCCCCCC
Confidence 9999999999999999999999999999999999999999999876554332221 122222210 011
Q ss_pred CcccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEec
Q 042783 163 CLHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQ 242 (525)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~ 242 (525)
..+...+..++++++.||||+++|+++.+. .+... .++++++|+++...|++|..+. ..++.+++.|+++++.+
T Consensus 606 ~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~----~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~~ 679 (1304)
T 2vsq_A 606 PNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVD----YMAFSDQDTFLSVSNYAFDAFT-FDFYASMLNAARLIIAD 679 (1304)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCC----SSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECC
T ss_pred CCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHH----hcCCCCCCEEEEECCccHHHHH-HHHHHHHHcCCEEEECC
Confidence 234566778889999999999999999865 33222 5678899999999999999888 78999999999999987
Q ss_pred C---CCHHHHHHHHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeecccccc
Q 042783 243 K---FEINSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMT 319 (525)
Q Consensus 243 ~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~yG~t 319 (525)
. .++..+.+.+.++++|+++++|++++.+.+.. ...+++||.+++|||+++.++.+++.+.++++++++.||+|
T Consensus 680 ~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 756 (1304)
T 2vsq_A 680 EHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPT 756 (1304)
T ss_dssp GGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCG
T ss_pred hhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChh
Confidence 4 68999999999999999999999999997653 22467899999999999999999999988778999999999
Q ss_pred ccccchhcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhcccC-----
Q 042783 320 EAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTID----- 394 (525)
Q Consensus 320 E~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~----- 394 (525)
|++.+++..... ..+......++|+|+++++++|+| ++++++|.|+.|||+|+|+.+++||+++++.|+..|.
T Consensus 757 E~~~~~~~~~~~-~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~ 834 (1304)
T 2vsq_A 757 EGTVFATAHVVH-DLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFK 834 (1304)
T ss_dssp GGSSCSEEEECC-CCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTS
T ss_pred HHhHHheeeecc-CccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCC
Confidence 999877654221 112234567899999999999999 6799999999999999999999999999999988873
Q ss_pred -CCCceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCC
Q 042783 395 -KEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQ 473 (525)
Q Consensus 395 -~~~~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 473 (525)
+++||+|||+|++++||.|+|+||+||+||++|.+|+|.+||.+|.++|+|.+++|++..++..+..++++++... .
T Consensus 835 ~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~ 912 (1304)
T 2vsq_A 835 PGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--Q 912 (1304)
T ss_dssp TTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--S
T ss_pred CCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--C
Confidence 3569999999999999999999999999999999999999999999999999999999988888889999998654 5
Q ss_pred CCHHHHHHHHHhcCCCCCCccEEEEeccCCCCCCCcccHHHHHHHH
Q 042783 474 ITEDEIKQFISKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKL 519 (525)
Q Consensus 474 ~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~ 519 (525)
.+.++++++++++||.|++|..|+++++||+|++||+||++|.+..
T Consensus 913 ~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~ 958 (1304)
T 2vsq_A 913 LSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPD 958 (1304)
T ss_dssp SCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCC
T ss_pred CCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcc
Confidence 7789999999999999999999999999999999999999886543
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=7.5e-71 Score=575.46 Aligned_cols=488 Identities=22% Similarity=0.294 Sum_probs=408.7
Q ss_pred CCCCCCHHHHHHhhhccCCCccEEEeCC--CCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHHHH
Q 042783 28 IPKHLPLHSYCFENISKVASRPCLINGS--TGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGAS 105 (525)
Q Consensus 28 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~--~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~ 105 (525)
.++.+|+.++|.++++++||++|+++.+ .++++||+||+++++++|++|.++|+++||+|+++++|++++++++|||+
T Consensus 7 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~ 86 (590)
T 3kxw_A 7 YLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCL 86 (590)
T ss_dssp HHTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred hcCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHH
Confidence 3556899999999999999999998642 24899999999999999999999999999999999999999999999999
Q ss_pred HhCCeEeecCCCCC---HHHHHHHHHHcCccEEEECccchHHHhccc--------CcEEEEecCC-----------CCCC
Q 042783 106 YRGAIATAANPFFT---PAETCKQAKASGAKLIITKASYVDKVKDLE--------EVKIMCIDSP-----------PDGC 163 (525)
Q Consensus 106 ~~G~~~v~l~~~~~---~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~--------~~~~~~~~~~-----------~~~~ 163 (525)
++|++++|+++..+ .+++.++++.+++++++++......+.... ....+..+.. ....
T Consensus 87 ~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (590)
T 3kxw_A 87 YAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALESIELNRSSSWQPTSIKS 166 (590)
T ss_dssp HTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEGGGCCGGGGGGCCCCCCCT
T ss_pred HhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeechhccccccccCCCCCCCC
Confidence 99999999999884 578899999999999999987665543321 1122222111 1112
Q ss_pred cccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC
Q 042783 164 LHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK 243 (525)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~ 243 (525)
.+...+..++++++.||||++||+++.+.+..... .++++++|++++++|++|.+|+...++.+++.|+++++.++
T Consensus 167 ~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~ 242 (590)
T 3kxw_A 167 NDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT----SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSP 242 (590)
T ss_dssp TSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCH
T ss_pred CCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH----hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCH
Confidence 34455677888999999999999999999888776 45688999999999999999995568999999999999886
Q ss_pred C----CHHHHHHHHHhcCceEeecchHHHHHHHcCCC---CCCcCcccceeEeeecCCCcHHHHHHHHHHCC-----CCe
Q 042783 244 F----EINSLLQLIERYKVTVAPVVPPIVLAIAKSPE---TEKYDLSSIRILKSGAAPLGKELEDAVRIKLP-----NAI 311 (525)
Q Consensus 244 ~----~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~---~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~-----~~~ 311 (525)
+ ++..+++.++++++|++.++|+++..+++... ....++++||.+++||+++++++.+++.+.++ ++.
T Consensus 243 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~ 322 (590)
T 3kxw_A 243 FSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEA 322 (590)
T ss_dssp HHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGG
T ss_pred HHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 5 78999999999999999999999999877532 33457899999999999999999999998873 457
Q ss_pred eeccccccccccchhcccccC----------------------CCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCe
Q 042783 312 LGQGYGMTEAGPVLAMCLSFA----------------------KEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPG 369 (525)
Q Consensus 312 i~~~yG~tE~~~~~~~~~~~~----------------------~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~G 369 (525)
+++.||+||++.+++...... .........++|+|+++ ++|+|++++++++.|+.|
T Consensus 323 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~G 400 (590)
T 3kxw_A 323 FYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVG 400 (590)
T ss_dssp EEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCE
T ss_pred cccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEE
Confidence 999999999998776432110 01122345788999998 888997779999999999
Q ss_pred EEEEecccccccccCChhhhhcccCC------CC--ceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHH-h
Q 042783 370 EICIRGDQIMTGYLNDPEATKSTIDK------EG--WLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALL-L 440 (525)
Q Consensus 370 el~v~g~~~~~gy~~~~~~~~~~~~~------~~--~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l-~ 440 (525)
||+|+|+.++.|||++++.|+..|.. +| ||+|||+|+++ ||+|+|+||+||+||++|++|+|.+||++| .
T Consensus 401 El~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~ 479 (590)
T 3kxw_A 401 EIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMH 479 (590)
T ss_dssp EEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHH
T ss_pred EEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHh
Confidence 99999999999999999999988842 24 99999999999 999999999999999999999999999999 7
Q ss_pred cCCCcc--eEEEecccCCCCCCeEEEEEEeCCCC--CCCHHHHHHHHHhcCCC-CCCcc-EEEEe--ccCCCCCCCcccH
Q 042783 441 SHSSIT--DAAVVPMKDDAAGEVPVAFVVKSNDS--QITEDEIKQFISKQVVF-YKRIN-RVFFI--DAIPKAPSGKILR 512 (525)
Q Consensus 441 ~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~l~~~l~~-~~~p~-~i~~~--~~~P~t~~GKv~r 512 (525)
.+|+|. +++|++++++. ++.+++++++.++. ..+.+++.++++++++. +++|. .++++ ++||+|++||++|
T Consensus 480 ~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R 558 (590)
T 3kxw_A 480 SPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRR 558 (590)
T ss_dssp SGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHH
T ss_pred cCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHH
Confidence 899998 89999988765 67778888876653 34567899999998885 77775 55555 7999999999999
Q ss_pred HHHHHHHHhhh
Q 042783 513 KELRAKLAADY 523 (525)
Q Consensus 513 ~~l~~~~~~~~ 523 (525)
++|+++|.++.
T Consensus 559 ~~L~~~~~~~~ 569 (590)
T 3kxw_A 559 NFCRKHLLDKT 569 (590)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHcCC
Confidence 99999998764
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=7.3e-71 Score=571.37 Aligned_cols=487 Identities=16% Similarity=0.152 Sum_probs=311.8
Q ss_pred CCCCCCCCCHHHHHHhhhccCCCccEEEeCCC--------CCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchh
Q 042783 25 DIYIPKHLPLHSYCFENISKVASRPCLINGST--------GDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPE 96 (525)
Q Consensus 25 ~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~--------~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~ 96 (525)
....++.+|+.++|.++++++||++|+++.+. ++++||+||+++++++|++|.+.|+ +||+|+++++|+++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~ 91 (562)
T 3ite_A 13 SAQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLI 91 (562)
T ss_dssp -----CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHH
T ss_pred ceeecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHH
Confidence 34456778999999999999999999986421 2799999999999999999999999 79999999999999
Q ss_pred HHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECccchHHHhcccCcEEEEecC----------------CC
Q 042783 97 FVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLEEVKIMCIDS----------------PP 160 (525)
Q Consensus 97 ~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~----------------~~ 160 (525)
+++++|||+++|++++|+++.++.+++.+++++++++++|++...............+.... ..
T Consensus 92 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (562)
T 3ite_A 92 AFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNN 171 (562)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETTCHHHHHHHHHSCCSCCCCC
T ss_pred HHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecccchhhhhhcccccccccccC
Confidence 99999999999999999999999999999999999999999876544332211222222110 00
Q ss_pred CCCcccccccccCCCCCCCceeEcchHHHHHHHHHhhhc----CCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCC
Q 042783 161 DGCLHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDG----ENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGA 236 (525)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~----~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~ 236 (525)
....+...+..++++++.||||++||+++.+.+...... ....+.+...+++++..|++|..++ ..++.++..|+
T Consensus 172 ~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~ 250 (562)
T 3ite_A 172 YPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI-GEMFLAWRFGL 250 (562)
T ss_dssp CCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHH-HHHHHHHHTTC
T ss_pred CCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhH-HHHHHHHhccc
Confidence 111223456778888999999999999998876554321 1112446788999999999999888 77889999999
Q ss_pred eEEEecCCC-HHHHHHHHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeecc
Q 042783 237 AILIMQKFE-INSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQG 315 (525)
Q Consensus 237 ~~v~~~~~~-~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~ 315 (525)
++++.+.+. +..+++.++++++|++.++|++++.+... ..++++||.+++||+++++++.+++.+.+ ++.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~ 325 (562)
T 3ite_A 251 CAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVALVNV 325 (562)
T ss_dssp EEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEEEEE
T ss_pred EEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhhCC-CcEEEEe
Confidence 999987643 46788999999999999999999887443 34678999999999999999999999876 8999999
Q ss_pred ccccccccchhcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhccc-C
Q 042783 316 YGMTEAGPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTI-D 394 (525)
Q Consensus 316 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~ 394 (525)
||+||++..++... .......+++|+|+++++++++|++++++++.|+.|||+|+|+.++.|||++++.+...+ +
T Consensus 326 YG~TE~~~~~~~~~----~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~ 401 (562)
T 3ite_A 326 YGPTEVTIGCSAGR----ILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDIN 401 (562)
T ss_dssp ECCGGGCSCSEEEE----CCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEET
T ss_pred eccchheeeeeeee----ecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccCC
Confidence 99999987665432 122345678999999999999998889999999999999999999999999999887654 2
Q ss_pred CCCceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcC-CCcceEEEecccCCCCCCeEEEEEEeCCCCC
Q 042783 395 KEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSH-SSITDAAVVPMKDDAAGEVPVAFVVKSNDSQ 473 (525)
Q Consensus 395 ~~~~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 473 (525)
+++||+|||+|++|+||+|+|.||+||+||++|++|+|.+||++|.++ +.+.+++|++..++..++..+++++...+..
T Consensus 402 g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~ 481 (562)
T 3ite_A 402 GRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAA 481 (562)
T ss_dssp TEEEEEEEEEEEECTTSCEEEEEEC-------------------------------------------------------
T ss_pred CCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccc
Confidence 334999999999999999999999999999999999999999999998 8888999888888777766555555443322
Q ss_pred CC-------------HHHHHHHHHhcCCCCCCccEEEEeccCCCC-CCCcccHHHHHHHHHhh
Q 042783 474 IT-------------EDEIKQFISKQVVFYKRINRVFFIDAIPKA-PSGKILRKELRAKLAAD 522 (525)
Q Consensus 474 ~~-------------~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t-~~GKv~r~~l~~~~~~~ 522 (525)
.. .++|+++|+++|+.|++|..|+++++||+| ++||++|++|+++|++.
T Consensus 482 ~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~ 544 (562)
T 3ite_A 482 VRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHTL 544 (562)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhcc
Confidence 22 348999999999999999999999999998 89999999999998754
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=3e-69 Score=562.19 Aligned_cols=491 Identities=19% Similarity=0.272 Sum_probs=410.1
Q ss_pred CCCCCCCCHHHHHHhhhccCCCccEEEeCC-CCCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHHH
Q 042783 26 IYIPKHLPLHSYCFENISKVASRPCLINGS-TGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGA 104 (525)
Q Consensus 26 ~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~ 104 (525)
...+...|+.++|.++++++|+.+++.+.. .++++||+||+++++++|++|.++|+++||+|+++++|+++++++++||
T Consensus 15 ~~~~~~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~ 94 (576)
T 3gqw_A 15 MRYADFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFAC 94 (576)
T ss_dssp CCCSCCSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred cccCCCCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 345666799999999999999988886532 2489999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeecCCCCC-------HHHHHHHHHHcCccEEEECccchHHHhcc----cCcEEEEec-----------CCCCC
Q 042783 105 SYRGAIATAANPFFT-------PAETCKQAKASGAKLIITKASYVDKVKDL----EEVKIMCID-----------SPPDG 162 (525)
Q Consensus 105 ~~~G~~~v~l~~~~~-------~~~~~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~-----------~~~~~ 162 (525)
+++|++++|+++.++ .+++.++++.+++++++++.+....+... .....+... .....
T Consensus 95 ~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (576)
T 3gqw_A 95 QYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHAWFKALPEADVALQRPV 174 (576)
T ss_dssp HHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEHHHHHTSCCCCCCCCCCC
T ss_pred HHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecchhhhhcccccccccCCCC
Confidence 999999999999998 78999999999999999998876554332 122222110 00111
Q ss_pred CcccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEec
Q 042783 163 CLHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQ 242 (525)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~ 242 (525)
..+...+..++++++.||||+++|+++.+.+...... .++++++|++++.+|++|.+|+...++.++..|+++++.+
T Consensus 175 ~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~ 251 (576)
T 3gqw_A 175 PNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD---GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLR 251 (576)
T ss_dssp TTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT---TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECC
T ss_pred CCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc---ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcc
Confidence 2345567778889999999999999999888766542 2468899999999999999999777889999999999876
Q ss_pred C----CCHHHHHHHHHhcCceEeecchHHHHHHHcCCCC---CCcCcccceeEeeecCCCcHHHHHHHHHHCC-----CC
Q 042783 243 K----FEINSLLQLIERYKVTVAPVVPPIVLAIAKSPET---EKYDLSSIRILKSGAAPLGKELEDAVRIKLP-----NA 310 (525)
Q Consensus 243 ~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~---~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~-----~~ 310 (525)
+ +++..+++.++++++|+++++|+++..+.+.... ...++++||.+++||+++++++.+++.+.++ ++
T Consensus 252 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~ 331 (576)
T 3gqw_A 252 TQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNK 331 (576)
T ss_dssp HHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGG
T ss_pred hhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcc
Confidence 4 5788999999999999999999999988765542 3456889999999999999999999998875 78
Q ss_pred eeeccccccccccchhcccccCCC-----------------------CcccCCCccccccCCceEEEEcCCCCCCCCCCC
Q 042783 311 ILGQGYGMTEAGPVLAMCLSFAKE-----------------------PFEIKAGACGTVVRNAEMKIVDPETGASLPTNK 367 (525)
Q Consensus 311 ~i~~~yG~tE~~~~~~~~~~~~~~-----------------------~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~ 367 (525)
.+++.||+||++.+++........ .......++|+|+++++++|+| +++++++.|+
T Consensus 332 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~ 410 (576)
T 3gqw_A 332 TFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAERV 410 (576)
T ss_dssp GEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTTB
T ss_pred cccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCCC
Confidence 899999999999877654211100 0001123789999999999999 8999999999
Q ss_pred CeEEEEecccccccccCChhhhhcccCCCCceecCceEEEcCCCcEEEEccccceeeeCCeeeChHHHHHHHhcCCCcce
Q 042783 368 PGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEALLLSHSSITD 447 (525)
Q Consensus 368 ~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TgDl~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~ 447 (525)
.|||+|+|+.++.||+++++.+...+ .+|||+|||+|++ +||+++++||.||+||++|++|+|.+||++|.+||+|.+
T Consensus 411 ~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~ 488 (576)
T 3gqw_A 411 VGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHS 488 (576)
T ss_dssp CEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSSSCCT
T ss_pred eEEEEEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCccccc
Confidence 99999999999999999998877655 6899999999999 799999999999999999999999999999999999999
Q ss_pred EEEecccCCCCCCeEEEEEEeCCCCCCCHHHHHHHHHhcC-CCCCCccEEEEec--cCCCCCCCcccHHHHHHHHHhhhc
Q 042783 448 AAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFISKQV-VFYKRINRVFFID--AIPKAPSGKILRKELRAKLAADYQ 524 (525)
Q Consensus 448 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l-~~~~~p~~i~~~~--~~P~t~~GKv~r~~l~~~~~~~~~ 524 (525)
++|+++.++. +..++++..........+++++++++++ +.+++|..+.++. +||+|++||++|++|+++|++.+.
T Consensus 489 ~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~ 566 (576)
T 3gqw_A 489 GDAIAFVTAQ--EKIILQIQCRISDEERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKAYA 566 (576)
T ss_dssp TSEEEEECTT--SCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHHHT
T ss_pred ccEEEEEcCC--ccEEEEEEEecCchhHHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHHHHHHHHHHHhh
Confidence 8888877653 3445555544444445578889998888 6899999998886 899999999999999999987654
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=8.7e-56 Score=450.33 Aligned_cols=381 Identities=20% Similarity=0.275 Sum_probs=312.7
Q ss_pred CCCCHHHHHHhhhccCCCccEEEeCC-----CC--CeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHH
Q 042783 30 KHLPLHSYCFENISKVASRPCLINGS-----TG--DVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFL 102 (525)
Q Consensus 30 ~~~~l~~~l~~~a~~~p~~~a~~~~~-----~~--~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 102 (525)
..+|+.++|.++++++||++|+++.+ ++ +++||+||+++++++|++|.++|+ +||+|+++++|++++++++|
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 35799999999999999999998753 22 799999999999999999999996 99999999999999999999
Q ss_pred HHHHhCCeEeecCC---CCCHHHHHHHHHHcCccEEEECccchHHHhccc-------CcEEEEecCC-----------CC
Q 042783 103 GASYRGAIATAANP---FFTPAETCKQAKASGAKLIITKASYVDKVKDLE-------EVKIMCIDSP-----------PD 161 (525)
Q Consensus 103 A~~~~G~~~v~l~~---~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~~~-----------~~ 161 (525)
||+++|++++|+++ .++.+++.+++++++++++|++......+.... ...++.++.. ..
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLDLDAPNGYTFKED 180 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSCTTCC---CCCCS
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccccccccCCCCCCC
Confidence 99999999999999 778899999999999999999988766554331 1123333211 11
Q ss_pred CCcccccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCC------CcEEEEecchhhHHHHHHHHHHHHHhC
Q 042783 162 GCLHFSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTK------EDAILCVLPLFHIYALNSIMLCGLRAG 235 (525)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~------~d~~l~~~pl~h~~g~~~~~~~~l~~G 235 (525)
...+...+..++++++.||||++||+++.+.+...... +.+.+ +|++++.+|++|.+|+...++.+++.|
T Consensus 181 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~----~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G 256 (480)
T 3t5a_A 181 EYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSG----YFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGG 256 (480)
T ss_dssp SCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHH----HCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHT
T ss_pred CCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHH----hccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcC
Confidence 12234556778888999999999999999887766552 23444 899999999999999877899999999
Q ss_pred CeEEEecCC----CHHHHHHHHHhcCceEeecchHHHHHHHcC----CCCCCcCcccceeEeeecCCCcHHHHHHHHHHC
Q 042783 236 AAILIMQKF----EINSLLQLIERYKVTVAPVVPPIVLAIAKS----PETEKYDLSSIRILKSGAAPLGKELEDAVRIKL 307 (525)
Q Consensus 236 ~~~v~~~~~----~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~----~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~ 307 (525)
+++++.++. ++..+++.++++++| +.++|+++..++.. ......++++||.+++||+++++++.+++.+.+
T Consensus 257 ~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 335 (480)
T 3t5a_A 257 YPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRF 335 (480)
T ss_dssp CCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHS
T ss_pred CceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHH
Confidence 999998753 889999999999999 88999988888763 233456789999999999999999999999988
Q ss_pred -----CCCeeeccccccccccchhcccccCCC--------------------CcccCCCccccccCCceEEEEcCCCCCC
Q 042783 308 -----PNAILGQGYGMTEAGPVLAMCLSFAKE--------------------PFEIKAGACGTVVRNAEMKIVDPETGAS 362 (525)
Q Consensus 308 -----~~~~i~~~yG~tE~~~~~~~~~~~~~~--------------------~~~~~~~~~G~p~~~~~~~i~~~~~~~~ 362 (525)
+++.+++.||+||++..++........ .......++|+|++ ++++|+|++++++
T Consensus 336 ~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~ 414 (480)
T 3t5a_A 336 ARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIE 414 (480)
T ss_dssp GGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEE
T ss_pred hhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcC
Confidence 456899999999999877654221110 00234568999999 9999999777899
Q ss_pred CCCCCCeEEEEecccccccccCChhhhhcccC-----------CCCceecCceEEEcCCCcEEEEcc
Q 042783 363 LPTNKPGEICIRGDQIMTGYLNDPEATKSTID-----------KEGWLHTGDIGYIDDNDELFIVDR 418 (525)
Q Consensus 363 ~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~-----------~~~~~~TgDl~~~~~dg~l~~~GR 418 (525)
++.|+.|||+|+|+.++.|||++++.|+..|+ ++|||+|||+|+++ ||+|+|+||
T Consensus 415 ~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 415 CPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp CCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999999999999999999999998884 56799999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=3.6e-50 Score=390.28 Aligned_cols=312 Identities=17% Similarity=0.190 Sum_probs=264.7
Q ss_pred cccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecCCCHH
Q 042783 168 ELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEIN 247 (525)
Q Consensus 168 ~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 247 (525)
.+..++++++.||||++||+++.+.+..... .++++++|++++++|++|++|+ ..++.++..|+++++.++. .
T Consensus 41 ~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~--~ 113 (358)
T 4gs5_A 41 FVLHTSGSTGMPKPITVTRAQLAASAAMTGK----ALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT--A 113 (358)
T ss_dssp EEEEEECTTSSEEEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC--S
T ss_pred EEEECCcccccCcEEEEeHHHHHHHHHHHHH----HhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc--c
Confidence 3556777888999999999999998887777 4568899999999999999999 7788899999999988642 1
Q ss_pred HHHHHHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHHHHHHCCCCeeeccccccccccchhc
Q 042783 248 SLLQLIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPVLAM 327 (525)
Q Consensus 248 ~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~ 327 (525)
..++.++++++|++.++|+++..|++.... ...+++||.+++||+++++++.+++++. ++++++.||+||++..++.
T Consensus 114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~~ 190 (358)
T 4gs5_A 114 NPLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVAL 190 (358)
T ss_dssp CTTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEEE
T ss_pred cHHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceeec
Confidence 346778999999999999999999987653 3468999999999999999999999874 8999999999999877665
Q ss_pred ccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhcccCCCCceecCceEEE
Q 042783 328 CLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYI 407 (525)
Q Consensus 328 ~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TgDl~~~ 407 (525)
.. ......+++|.+.|++.+.+.+ .|||+++|+.. .+|||+|||+|++
T Consensus 191 ~~-----~~~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g~~~TGDlg~~ 238 (358)
T 4gs5_A 191 KA-----LNGPEASELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQTVQTNDLVEI 238 (358)
T ss_dssp EE-----CSSTTCCSCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTCCEEEEEEEEE
T ss_pred cc-----ccccccceeeccCCCeEEEecC-----------cCceEEecccc----------------cCcceecCCcccc
Confidence 42 2234567889999999988755 39999998643 5789999999999
Q ss_pred cCCCcEEEEccccceeeeCCeeeChHHHHHHHh---cCCCcceEEEe-cccCCCCCCeEEEEEEeCCCCCCCHHHHHHHH
Q 042783 408 DDNDELFIVDRLKELIKYKGFQVAPAELEALLL---SHSSITDAAVV-PMKDDAAGEVPVAFVVKSNDSQITEDEIKQFI 483 (525)
Q Consensus 408 ~~dg~l~~~GR~~d~i~~~G~~v~~~~iE~~l~---~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l 483 (525)
|+|| ++++||+||+||++|++|+|.+||+.|. +||+|.+++|+ +.+|+..|+.++++|+... .....++|+++|
T Consensus 239 d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~-~~~~~~~l~~~l 316 (358)
T 4gs5_A 239 HGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAM-PEALTERLTAEI 316 (358)
T ss_dssp CSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCC-CHHHHHHHHHHH
T ss_pred ccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCC-CCcCHHHHHHHH
Confidence 9888 6778999999999999999999998774 58999998876 5667888888888877543 345668899999
Q ss_pred HhcCCCCCCccEEEEeccCCCCCCCcccHHHHHHHHHhhh
Q 042783 484 SKQVVFYKRINRVFFIDAIPKAPSGKILRKELRAKLAADY 523 (525)
Q Consensus 484 ~~~l~~~~~p~~i~~~~~~P~t~~GKv~r~~l~~~~~~~~ 523 (525)
+++|+.|++|..|+++++||+|++||++|++|+++|++..
T Consensus 317 ~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 317 RSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp HHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC---
T ss_pred HhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999997654
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=4.1e-46 Score=373.54 Aligned_cols=323 Identities=16% Similarity=0.163 Sum_probs=266.2
Q ss_pred ccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecCCCH
Q 042783 167 SELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKFEI 246 (525)
Q Consensus 167 ~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 246 (525)
..+..++++++.||+|++||+++.+.+........ .++++++|+++..+|+.|..+....++.++..|+++++.+..++
T Consensus 89 a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~ 167 (436)
T 3qov_A 89 VRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLY-MVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAGNS 167 (436)
T ss_dssp EEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHH-HTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSCCH
T ss_pred EEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHH-HcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCCCH
Confidence 44566788888999999999999776655432111 23578999999999998777765778899999999999988999
Q ss_pred HHHHHHHHhcCceEeecchHHHHHHHcCCCCCCc--CcccceeEeeecCCCcHHHHHHHHHHCCCCeeeccccccccccc
Q 042783 247 NSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKY--DLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAGPV 324 (525)
Q Consensus 247 ~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~--~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~ 324 (525)
..+++.++++++|+++++|+++..|++....... .+++||.+++||+++++++.+++.+.| ++++++.||+||+++.
T Consensus 168 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~ 246 (436)
T 3qov_A 168 KRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFGMTEMNGP 246 (436)
T ss_dssp HHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEEGGGTEE
T ss_pred HHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCcchhhcCC
Confidence 9999999999999999999999999876543333 378999999999999999999999999 9999999999999544
Q ss_pred hhcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhcccCCCCceecCce
Q 042783 325 LAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDI 404 (525)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TgDl 404 (525)
++.... ......|.+.+++.++|+|++++++++.|+.|||+|+|.. ...+ ..+||+|||+
T Consensus 247 ~~~~~~-------~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~------------~~~~-~~~~y~TGDl 306 (436)
T 3qov_A 247 GVAFEC-------QEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD------------REMM-PLIRYRTRDL 306 (436)
T ss_dssp EEEEEC-------TTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS------------CCSS-CCCSEEEEEE
T ss_pred eeEEec-------CCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC------------cCCc-eEEEEEcCCE
Confidence 222110 1112357777899999999889999999999999999842 2233 5789999999
Q ss_pred EEEcCCC------c---EEEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCCCC
Q 042783 405 GYIDDND------E---LFIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQIT 475 (525)
Q Consensus 405 ~~~~~dg------~---l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 475 (525)
|+++++| + +++.||.||+||++|.+|+|.+||++|.++|+|.+++|++..++..++.++++|++. +...+
T Consensus 307 ~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~ 385 (436)
T 3qov_A 307 TRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTD 385 (436)
T ss_dssp ECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCC
T ss_pred EEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccccc
Confidence 9999998 5 699999999999999999999999999999999999999998877788899999988 55454
Q ss_pred ----HHHHHHHHHhcCCCC-CCccEEEEec--cCCCCCCCcccHH
Q 042783 476 ----EDEIKQFISKQVVFY-KRINRVFFID--AIPKAPSGKILRK 513 (525)
Q Consensus 476 ----~~~l~~~l~~~l~~~-~~p~~i~~~~--~~P~t~~GKv~r~ 513 (525)
.++++++++++|+.+ ++|..+++++ +||+|+ ||++|.
T Consensus 386 ~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 386 NYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred chhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 678999999999998 9999999998 999999 999985
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=7.8e-46 Score=372.33 Aligned_cols=328 Identities=17% Similarity=0.168 Sum_probs=267.2
Q ss_pred cccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecch-hhHHHHHHHHHHHHHhCCeEEEecCC
Q 042783 166 FSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPL-FHIYALNSIMLCGLRAGAAILIMQKF 244 (525)
Q Consensus 166 ~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~~~~~l~~G~~~v~~~~~ 244 (525)
...+..++++++.||+|.+||+++...+........ .++++++|+++..+|+ .|..++ ...+.++..|+++++.+.+
T Consensus 94 ~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~ 171 (443)
T 2y4o_A 94 VVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIR-AAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVVPMSGG 171 (443)
T ss_dssp CCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHH-HTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEECCCSC
T ss_pred eEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH-HcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEEECCCC
Confidence 344566778888999999999998776544322111 2457899999999999 466666 6688899999999998888
Q ss_pred CHHHHHHHHHhcCceEeecchHHHHHHHcCCCCCCc--CcccceeEeeecCCCcHHHHHHHHHHCCCCeeeccccccccc
Q 042783 245 EINSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKY--DLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEAG 322 (525)
Q Consensus 245 ~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~--~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~ 322 (525)
++..+++.++++++|+++++|+++..|++....... .+++||.+++||+++++++.+++.+.| ++++++.||+||++
T Consensus 172 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~ 250 (443)
T 2y4o_A 172 QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGLSEVM 250 (443)
T ss_dssp CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEETTTT
T ss_pred CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCchhhc
Confidence 999999999999999999999999999875432222 357999999999999999999999988 89999999999974
Q ss_pred -cchhcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhcccCCCCceec
Q 042783 323 -PVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHT 401 (525)
Q Consensus 323 -~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~T 401 (525)
..+.... .. .....+.+.+++.++|+|++++++++.|+.|||+++|. +...+ +.+||+|
T Consensus 251 g~~~~~~~----~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~-p~~~y~T 310 (443)
T 2y4o_A 251 GPGVACEC----VE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAM-PVIRYRT 310 (443)
T ss_dssp EEEEEEEC----TT---TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCSSEEE
T ss_pred CCeEEecc----CC---CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccC-hhheeec
Confidence 3232211 10 11124556789999999988899999999999999983 22234 5789999
Q ss_pred CceEEEcCC-CcE-----EEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCC--C--
Q 042783 402 GDIGYIDDN-DEL-----FIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSN--D-- 471 (525)
Q Consensus 402 gDl~~~~~d-g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~--~-- 471 (525)
||+|+++++ |++ ++.||.||+||++|.+|+|.+||++|.++|+|.+++++++.++..++.++++|++.+ +
T Consensus 311 GDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~ 390 (443)
T 2y4o_A 311 RDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAAS 390 (443)
T ss_dssp EEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTT
T ss_pred CCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccccc
Confidence 999999999 987 899999999999999999999999999999999999998877666778888888765 2
Q ss_pred -CCCCHHHHHHHHHhcCCCC-CCccEEEEe--ccCCCCCCCcccHHHHH
Q 042783 472 -SQITEDEIKQFISKQVVFY-KRINRVFFI--DAIPKAPSGKILRKELR 516 (525)
Q Consensus 472 -~~~~~~~l~~~l~~~l~~~-~~p~~i~~~--~~~P~t~~GKv~r~~l~ 516 (525)
...+.++++++|+++|+.+ .+|..+.++ ++||+|++||++|+..+
T Consensus 391 ~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 391 VTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred chhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEec
Confidence 2244578999999999887 489888888 59999999999997543
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=7.2e-45 Score=364.62 Aligned_cols=325 Identities=19% Similarity=0.201 Sum_probs=266.6
Q ss_pred cccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecch-hhHHHHHHHHHHHHHhCCeEEEecCC
Q 042783 166 FSELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPL-FHIYALNSIMLCGLRAGAAILIMQKF 244 (525)
Q Consensus 166 ~~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~~~~~l~~G~~~v~~~~~ 244 (525)
...+..++++++.||+|++||+++...+........ .++++++|+++..+|+ +|..++ ..++.++..|+++++.+.+
T Consensus 92 ~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~ 169 (437)
T 2y27_A 92 ISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIR-AAGARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVIPFGGG 169 (437)
T ss_dssp CCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHH-HTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEECCCSC
T ss_pred eEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH-HcCCCCCCEEEEcccccccccch-HHHHHHHHcCCEEEeCCCC
Confidence 344566778888999999999998776543322111 2457899999999998 677776 6678999999999988888
Q ss_pred CHHHHHHHHHhcCceEeecchHHHHHHHcCCCCCCc--CcccceeEeeecCCCcHHHHHHHHHHCCCCeeecccccccc-
Q 042783 245 EINSLLQLIERYKVTVAPVVPPIVLAIAKSPETEKY--DLSSIRILKSGAAPLGKELEDAVRIKLPNAILGQGYGMTEA- 321 (525)
Q Consensus 245 ~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~--~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~i~~~yG~tE~- 321 (525)
++..+++.++++++|+++++|+++..|++....... .+++||.+++||+++++++.+++.+.+ ++++++.||+||+
T Consensus 170 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~ 248 (437)
T 2y27_A 170 QTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGLSEVM 248 (437)
T ss_dssp CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEETTTT
T ss_pred CHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCchhhc
Confidence 999999999999999999999999999875432222 257999999999999999999999888 8999999999998
Q ss_pred ccchhcccccCCCCcccCCCccccccCCceEEEEcCCCCCCCCCCCCeEEEEecccccccccCChhhhhcccCCCCceec
Q 042783 322 GPVLAMCLSFAKEPFEIKAGACGTVVRNAEMKIVDPETGASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHT 401 (525)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~T 401 (525)
+..++... .. .....+.+.+++.++|+|++++++++.|+.|||+++|. +...+ +.+||+|
T Consensus 249 g~~~~~~~----~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~~~y~T 308 (437)
T 2y27_A 249 GPGVASEC----VE---TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PIIRYRT 308 (437)
T ss_dssp EEEEEECC----TT---TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCCSEEE
T ss_pred CCeeEEec----CC---CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hhheeec
Confidence 43233211 10 11125667789999999988899999999999999983 22334 5789999
Q ss_pred CceEEEcC-CCcE-----EEEccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCC--
Q 042783 402 GDIGYIDD-NDEL-----FIVDRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQ-- 473 (525)
Q Consensus 402 gDl~~~~~-dg~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-- 473 (525)
||+|++++ +|++ ++.||.||+||++|++|+|.+||++|.++|+|.+++|+++.++..++.++++|++.++..
T Consensus 309 GDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~ 388 (437)
T 2y27_A 309 RDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPD 388 (437)
T ss_dssp EEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTC
T ss_pred CCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccch
Confidence 99999999 6985 899999999999999999999999999999999999998887666788899988776543
Q ss_pred -CCHHHHHHHHHhcCCCC-CCccEEEEe--ccCCCCCCCcccHHH
Q 042783 474 -ITEDEIKQFISKQVVFY-KRINRVFFI--DAIPKAPSGKILRKE 514 (525)
Q Consensus 474 -~~~~~l~~~l~~~l~~~-~~p~~i~~~--~~~P~t~~GKv~r~~ 514 (525)
.+.++++++++++|+.+ .+|..+.++ ++||+|+ ||++|+.
T Consensus 389 ~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 389 TAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred hhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 34578999999999988 589888888 5999999 9999864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.94 E-value=1.1e-26 Score=227.05 Aligned_cols=235 Identities=13% Similarity=0.093 Sum_probs=178.8
Q ss_pred ccccccCCCCCCCceeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecch-hhHHHHHHHHHHHHHhCCeEEEecCCC
Q 042783 167 SELTQADEKDLPHVGVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPL-FHIYALNSIMLCGLRAGAAILIMQKFE 245 (525)
Q Consensus 167 ~~~~~~~~~~~~~~~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~~~~~l~~G~~~v~~~~~~ 245 (525)
..+..++++++.||+|.++|+++...+.+...... .++++++|++++.+|+ +|..++ ...+.++..|+ ++++..++
T Consensus 94 a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~-~~~~~~~d~~l~~~p~g~~~~g~-~~~~~~~~~G~-~v~~~~~d 170 (369)
T 3hgu_A 94 PQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQ-HRPGRPSGNTLAAIPTGPHIVGA-INKERALRLGG-MFFSIDID 170 (369)
T ss_dssp CEEEEECC---CCEEEEECHHHHHHHHHHHTTTTT-TSTTCCCCEEEECSCCTTCHHHH-HHHHHHHHTTS-CEECCCCC
T ss_pred EEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHH-hhCCCCcceEEEecCCCchhhhH-HHHHHHHHcCC-EEECccCC
Confidence 45667888889999999999999988876544333 5678899999999999 999998 55666689999 66766677
Q ss_pred HH-----------------------HHHHHHHhcCceEeecchHHHHHHHcCCCCCCcCcccceeEeeecCCCcHHHHHH
Q 042783 246 IN-----------------------SLLQLIERYKVTVAPVVPPIVLAIAKSPETEKYDLSSIRILKSGAAPLGKELEDA 302 (525)
Q Consensus 246 ~~-----------------------~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG~~l~~~~~~~ 302 (525)
+. .+++.++++++|++.++|+++..|++........+++||.+++||+++++++.++
T Consensus 171 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~ 250 (369)
T 3hgu_A 171 PRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKF 250 (369)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHHHHHH
T ss_pred hHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHHHHHH
Confidence 77 8888999999999999999999998875433356789999999999999999999
Q ss_pred HH-HHCCCCeeeccccccccccchhcccccCCCCcccCCCccccc------cCCceEEEEcCCCCCCCCCCCCeEEEEec
Q 042783 303 VR-IKLPNAILGQGYGMTEAGPVLAMCLSFAKEPFEIKAGACGTV------VRNAEMKIVDPETGASLPTNKPGEICIRG 375 (525)
Q Consensus 303 ~~-~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~p------~~~~~~~i~~~~~~~~~~~g~~Gel~v~g 375 (525)
+. +.||++++++.||+||++.++..+ ...++|+| .++++++|+|++++++++.|+.|||+|++
T Consensus 251 ~~~~~~p~~~v~~~YG~TE~~~~~~~~----------~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~ 320 (369)
T 3hgu_A 251 IASEILPDCEFSASYGSTSALGVSRSL----------LITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTH 320 (369)
T ss_dssp HHHHTCTTSEEEEEEEEGGGTEEEEEC----------CBCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEE
T ss_pred HHHHhCCCcEEEcccCchhhhcceecc----------ccccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEE
Confidence 99 999999999999999998665432 11157888 99999999997799999999999999987
Q ss_pred ccccccccCChhhhhcccCCCCceecCceEEEcCC--C-------cEEEEccccceeeeCCe
Q 042783 376 DQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDDN--D-------ELFIVDRLKELIKYKGF 428 (525)
Q Consensus 376 ~~~~~gy~~~~~~~~~~~~~~~~~~TgDl~~~~~d--g-------~l~~~GR~~d~i~~~G~ 428 (525)
..... + -..|+|||++.+.+. | .+..++|.++..++.|.
T Consensus 321 l~~~~------------~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 321 LSPWA------------F--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EETTE------------E--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred cCccc------------c--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 42110 1 114899999988653 2 35667777777777664
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.58 E-value=2.9e-15 Score=117.74 Aligned_cols=95 Identities=20% Similarity=0.294 Sum_probs=73.3
Q ss_pred ccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCCCCH---HHHHHHHHhcCCC-CCC
Q 042783 417 DRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITE---DEIKQFISKQVVF-YKR 492 (525)
Q Consensus 417 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~-~~~ 492 (525)
.|+||+|+++|.||+|.+||++|.+||+|.+++++++.++..++.+.++|+..++...+. +++.+.+++.+.. +.+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 499999999999999999999999999999999999999888889999998877655544 3444555554432 234
Q ss_pred ccEEEEe--ccCCCCCCCcccH
Q 042783 493 INRVFFI--DAIPKAPSGKILR 512 (525)
Q Consensus 493 p~~i~~~--~~~P~t~~GKv~r 512 (525)
+..+.++ ++|||| +||++|
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CCEEEEECTTCSCCC----CCC
T ss_pred ccceEEEcCCeecCC-CCCcch
Confidence 5566666 589999 799988
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.57 E-value=2.9e-15 Score=117.41 Aligned_cols=95 Identities=19% Similarity=0.301 Sum_probs=72.2
Q ss_pred ccccceeeeCCeeeChHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCCC----CHHHHHHHHHhcCC-CCC
Q 042783 417 DRLKELIKYKGFQVAPAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQI----TEDEIKQFISKQVV-FYK 491 (525)
Q Consensus 417 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~l~~~l~-~~~ 491 (525)
||.||+|+++|.+|+|.+||++|.+||+|.+++++++.++..++.+++++++ ++... +.+++.+.+++.+. .+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999998888888877777888888887 54322 33455555555543 234
Q ss_pred CccEEEEec--cCCCCCCCcccHH
Q 042783 492 RINRVFFID--AIPKAPSGKILRK 513 (525)
Q Consensus 492 ~p~~i~~~~--~~P~t~~GKv~r~ 513 (525)
++..+.+++ +||+| +||++|.
T Consensus 80 ~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCE
T ss_pred CceEEEEECCCCccCC-CCceEEE
Confidence 555788886 89999 9999873
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.31 E-value=4.1e-06 Score=84.25 Aligned_cols=133 Identities=19% Similarity=0.205 Sum_probs=85.2
Q ss_pred cccce---eEeeecCCCcHHHHHHHHHHCCCCeee-ccccccccccchhcccccCCCCcccCCCccc-cccCC-ceEEEE
Q 042783 282 LSSIR---ILKSGAAPLGKELEDAVRIKLPNAILG-QGYGMTEAGPVLAMCLSFAKEPFEIKAGACG-TVVRN-AEMKIV 355 (525)
Q Consensus 282 l~~lr---~v~~gG~~l~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G-~p~~~-~~~~i~ 355 (525)
.++++ .++.||- ..-.+.++..+++..++ ..|++||+- +.... .+ ...+...+ ..+|+ +-++.+
T Consensus 301 WPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~-----~p-~~~p~~~~~~L~p~~~ffEFI 370 (609)
T 4b2g_A 301 WPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECY-FGLNL-----NP-MSKPSEVSYTIMPNMAYFEFL 370 (609)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCE-EEECS-----CT-TSCGGGCCEEECTTSCEEEEE
T ss_pred CCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCccccccee-eeeec-----CC-CCCcccCceeecCCcEEEEEE
Confidence 46654 4455552 33335555555577776 999999974 22211 01 11111112 12232 444555
Q ss_pred cCCCC---------------CCCCCCCCeEEEEecccccccccCChhhhhcccCCCCceecCceEEEcC----CCcEEEE
Q 042783 356 DPETG---------------ASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDD----NDELFIV 416 (525)
Q Consensus 356 ~~~~~---------------~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TgDl~~~~~----dg~l~~~ 416 (525)
..++. ..+..|+.+||+++.- .|+| .|++||++++.. .+++.|.
T Consensus 371 P~~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~--------------RYr~GD~v~v~~f~~~~p~i~~~ 433 (609)
T 4b2g_A 371 PHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLY--------------RYRVGDILRVTGFHNSAPQFHFV 433 (609)
T ss_dssp EGGGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCC--------------SEEEEEEEEEEEEETTEEEEEEE
T ss_pred eccccccccccCCCCccccHhHcCCCCeEEEehhhh---hhhh--------------heecCCEEEEeecCCCCcEEEEE
Confidence 32221 2467899999999764 2444 299999999873 4789999
Q ss_pred ccccceeeeCCeeeChHHHHHHHhc
Q 042783 417 DRLKELIKYKGFQVAPAELEALLLS 441 (525)
Q Consensus 417 GR~~d~i~~~G~~v~~~~iE~~l~~ 441 (525)
||.++++++.|++++..+||++|.+
T Consensus 434 gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 434 RRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp EETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred EecCCeEEccccCCCHHHHHHHHHH
Confidence 9999999999999999999999973
No 40
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.20 E-value=1.1e-05 Score=81.04 Aligned_cols=134 Identities=14% Similarity=0.164 Sum_probs=86.6
Q ss_pred ccc---ceeEeeecCCCcHHHHHHHHHHCCCCeee-ccccccccccchhcccccCCCCcccCCCcccc-ccCC-ceEEEE
Q 042783 282 LSS---IRILKSGAAPLGKELEDAVRIKLPNAILG-QGYGMTEAGPVLAMCLSFAKEPFEIKAGACGT-VVRN-AEMKIV 355 (525)
Q Consensus 282 l~~---lr~v~~gG~~l~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~-p~~~-~~~~i~ 355 (525)
.++ +..++.||- ..-.+.++..+++..+. ..|++||+- +.. .. .+ ...+...+. .+|+ +-++.+
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi-~~----~p-~~~~~~~~~~L~~~~~ffEFi 365 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT-FGI-NL----DP-LCKPEDVSYTFMPNMSYFEFI 365 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE-EEE-CS----CT-TSCGGGCCEEECTTSSEEEEE
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce-eee-cc----CC-CCCcccCceeecCCcEEEEEE
Confidence 466 445555662 33445555555677777 999999963 222 10 01 111111121 2222 445565
Q ss_pred cCCCC--------CCCCCCCCeEEEEecccccccccCChhhhhcccCCCCceecCceEEEcC----CCcEEEEcccccee
Q 042783 356 DPETG--------ASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDD----NDELFIVDRLKELI 423 (525)
Q Consensus 356 ~~~~~--------~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TgDl~~~~~----dg~l~~~GR~~d~i 423 (525)
+.++. ..+..|+.+||+++.-. |.| .|++||+.++.. .+++.|.||.++++
T Consensus 366 p~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l 428 (581)
T 4eql_A 366 PMDGGDKNDVVDLEDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVL 428 (581)
T ss_dssp ECSTTCCSSCEEGGGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEE
T ss_pred eccccCCCcEeCHHHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEE
Confidence 42211 23568999999998652 333 299999999875 46899999999999
Q ss_pred eeCCeeeChHHHHHHHhcC
Q 042783 424 KYKGFQVAPAELEALLLSH 442 (525)
Q Consensus 424 ~~~G~~v~~~~iE~~l~~~ 442 (525)
.+.|+++...+||++|.+.
T Consensus 429 ~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 429 SIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp CSSSCCEEHHHHHHHHHHC
T ss_pred EeeeeECCHHHHHHHHHHH
Confidence 9999999999999999853
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.18 E-value=1.8e-05 Score=79.19 Aligned_cols=145 Identities=12% Similarity=0.102 Sum_probs=90.6
Q ss_pred ccccee--EeeecCCCcHHHHHHHHHHCCCCeee-ccccccccccchhcccccCCCCcccCCCcc-ccccCC-ceEEEEc
Q 042783 282 LSSIRI--LKSGAAPLGKELEDAVRIKLPNAILG-QGYGMTEAGPVLAMCLSFAKEPFEIKAGAC-GTVVRN-AEMKIVD 356 (525)
Q Consensus 282 l~~lr~--v~~gG~~l~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~-G~p~~~-~~~~i~~ 356 (525)
.++|+. ++.+|. + ..-.++++..+++..+. ..|++||+- +.. . ......++.. ...+|+ +-++.+.
T Consensus 301 WPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi-~-----~~p~~~~~~~~~~L~p~~~ffEFiP 371 (581)
T 4epl_A 301 FPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEGW-IAA-N-----VTPRLSPEEATFAVIPNLGYFEFLP 371 (581)
T ss_dssp CTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTEE-EEE-C-----CCTTSCTTTCCEEECTTSCEEEEEE
T ss_pred CCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceecccee-eee-e-----cCCCCCccccceeecCCcEEEEEEe
Confidence 567763 334442 2 33335555555677777 999999963 222 1 1111111111 222333 3344443
Q ss_pred CCCC----------CCCCCCCCeEEEEecccccccccCChhhhhcccCCCCceecCceEEEcC----CCcEEEEccccce
Q 042783 357 PETG----------ASLPTNKPGEICIRGDQIMTGYLNDPEATKSTIDKEGWLHTGDIGYIDD----NDELFIVDRLKEL 422 (525)
Q Consensus 357 ~~~~----------~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TgDl~~~~~----dg~l~~~GR~~d~ 422 (525)
.++. ..+..|+.+||+++.-. |.| .|++||+.++.. ..++.|.||.+++
T Consensus 372 ~~~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~ 434 (581)
T 4epl_A 372 VSETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLI 434 (581)
T ss_dssp C-------CCCEEGGGCCTTCEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCC
T ss_pred cccccCCCCceeeHHHcCCCCeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCe
Confidence 2111 24678999999998652 333 399999999864 2579999999999
Q ss_pred eeeCCeeeChHHHHHHHhc------CC--CcceEEEec
Q 042783 423 IKYKGFQVAPAELEALLLS------HS--SITDAAVVP 452 (525)
Q Consensus 423 i~~~G~~v~~~~iE~~l~~------~~--~v~~~~v~~ 452 (525)
+++.|++++..+||+++.+ .. .|.+..+..
T Consensus 435 l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~ 472 (581)
T 4epl_A 435 LSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYI 472 (581)
T ss_dssp BCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEE
T ss_pred EEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEec
Confidence 9999999999999999874 22 355666655
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=92.53 E-value=0.82 Score=44.62 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=72.8
Q ss_pred CeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCc--hhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEE
Q 042783 58 DVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNV--PEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLI 135 (525)
Q Consensus 58 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v 135 (525)
..+|.+.+...+..++..+...|+.++|++...++-+ .......++++..|+.+++++. .+.+.+...+++.+++++
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 5789999998888888888788999999999988853 3445567888999999998765 478899999999999999
Q ss_pred EECccchHHHh
Q 042783 136 ITKASYVDKVK 146 (525)
Q Consensus 136 i~~~~~~~~~~ 146 (525)
+..+.....+.
T Consensus 187 ~~~Ps~~~~l~ 197 (437)
T 2y27_A 187 MVTPSYMLSIA 197 (437)
T ss_dssp EECHHHHHHHH
T ss_pred EECHHHHHHHH
Confidence 99888776554
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=92.53 E-value=1.1 Score=43.71 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=73.0
Q ss_pred CeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCc--hhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEE
Q 042783 58 DVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNV--PEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLI 135 (525)
Q Consensus 58 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v 135 (525)
..+|.+.+...+..++..+...|+.++|++...++-+ .......++++..|+.+++++.. +.+.+...+++.+++++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 5789999998888888888788999999999988853 34455678888999999988664 78889999999999999
Q ss_pred EECccchHHHh
Q 042783 136 ITKASYVDKVK 146 (525)
Q Consensus 136 i~~~~~~~~~~ 146 (525)
+..+.....+.
T Consensus 189 ~~~Ps~~~~l~ 199 (443)
T 2y4o_A 189 LVTPSYMLNLI 199 (443)
T ss_dssp EECHHHHHHHH
T ss_pred EECHHHHHHHH
Confidence 99888766553
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=91.95 E-value=0.95 Score=44.13 Aligned_cols=88 Identities=17% Similarity=0.052 Sum_probs=73.8
Q ss_pred CeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCc--hhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEE
Q 042783 58 DVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNV--PEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLI 135 (525)
Q Consensus 58 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v 135 (525)
..+|.+.+...+..+++.+...|+.++|++...++-+ ...+..+++++..|+..++.+. ..++.+...+++.+++++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEE
Confidence 5789999999998898888888999999999998743 4455677888999999998765 477889999999999999
Q ss_pred EECccchHHHh
Q 042783 136 ITKASYVDKVK 146 (525)
Q Consensus 136 i~~~~~~~~~~ 146 (525)
+..+.....+.
T Consensus 183 ~~~P~~~~~l~ 193 (436)
T 3qov_A 183 HAIPSYAIRLA 193 (436)
T ss_dssp ECCHHHHHHHH
T ss_pred EECHHHHHHHH
Confidence 99888776554
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=84.62 E-value=8.5 Score=38.05 Aligned_cols=99 Identities=16% Similarity=0.103 Sum_probs=75.4
Q ss_pred CCCccEEEe---CCCC----CeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchh-HHHHHHHHHHhCCeEeecCC
Q 042783 45 VASRPCLIN---GSTG----DVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPE-FVFSFLGASYRGAIATAANP 116 (525)
Q Consensus 45 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~ 116 (525)
.++.+|++. +.+| ..+|++.+...+..+... .++.+++++...+|-... .+..+++++..|+..+..+.
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~ 237 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK 237 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCC
Confidence 467777653 2222 688999988877666554 488999999998886533 34457788889999988764
Q ss_pred CCCHHHHHHHHHHcCccEEEECccchHHHhc
Q 042783 117 FFTPAETCKQAKASGAKLIITKASYVDKVKD 147 (525)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 147 (525)
.+++.+...+++.+++++...+.....+..
T Consensus 238 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 267 (501)
T 3ipl_A 238 -FNAEQILTMIKNERITHISLVPQTLNWLMQ 267 (501)
T ss_dssp -CCHHHHHHHHHHSCCCEEEECHHHHHHHHH
T ss_pred -CCHHHHHHHHHHcCCcEEEchHHHHHHHHh
Confidence 788999999999999999999888776644
No 46
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=81.68 E-value=4.7 Score=38.03 Aligned_cols=87 Identities=10% Similarity=0.007 Sum_probs=64.4
Q ss_pred CeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCc--hhHHHHHHHHHHhCCeEeecCCCCCHH--------------
Q 042783 58 DVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNV--PEFVFSFLGASYRGAIATAANPFFTPA-------------- 121 (525)
Q Consensus 58 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~-------------- 121 (525)
..+|.+.+...+..++..+...|+.++|++..++|-+ .......++++..|+.+++.+ +++.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 5789999988888777777778999999999998862 233444555588899655543 3444
Q ss_pred ---------HHHHHHHHcCccEEEECccchHHHh
Q 042783 122 ---------ETCKQAKASGAKLIITKASYVDKVK 146 (525)
Q Consensus 122 ---------~~~~~l~~~~~~~vi~~~~~~~~~~ 146 (525)
.+...+++.++.+++..+.....+.
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 6666889999999999887766554
No 47
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=80.17 E-value=16 Score=36.52 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=73.8
Q ss_pred CCCccEEEe---CCCC----CeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHH--H-HHHHHHHhCCeEeec
Q 042783 45 VASRPCLIN---GSTG----DVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFV--F-SFLGASYRGAIATAA 114 (525)
Q Consensus 45 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~--~-~~lA~~~~G~~~v~l 114 (525)
.|+.+|++. +.+| ..+|.+.+...+......+ ++.+++++...+|-+..+- . .+++++..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC---WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh---CCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 466777653 2222 6899999887776665544 7889999999888654433 2 478889999999877
Q ss_pred CCCCCHHHHHHHHHHcCccEEEECccchHHHh
Q 042783 115 NPFFTPAETCKQAKASGAKLIITKASYVDKVK 146 (525)
Q Consensus 115 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 146 (525)
+ ..+++.+...+++.+++++...+.....+.
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 287 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPLAMVWM 287 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHHHHHHH
Confidence 5 467889999999999999999888766553
No 48
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=78.80 E-value=5.2 Score=40.20 Aligned_cols=87 Identities=10% Similarity=0.065 Sum_probs=67.5
Q ss_pred eEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHhcCceE
Q 042783 182 VMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FEINSLLQLIERYKVTV 260 (525)
Q Consensus 182 v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~ 260 (525)
-.+|++.+...+......+. ..+++++|++...+|-+..+ +..+++.+..|+..+..++ .....+..+++..+++.
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~ 127 (549)
T 3g7s_A 51 ESMNFLEICEVTKKLASGIS-RKGVRKGEHVGVCIPNSIDY--VMTIYALWRVAATPVPINPMYKSFELEHILNDSEATT 127 (549)
T ss_dssp SEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSE
T ss_pred ceeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHH--HHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCE
Confidence 46788888777655554443 45788999999999876543 3678999999999998865 67889999999999999
Q ss_pred eecchHHHHHH
Q 042783 261 APVVPPIVLAI 271 (525)
Q Consensus 261 ~~~~P~~l~~l 271 (525)
++..+.....+
T Consensus 128 ~i~~~~~~~~~ 138 (549)
T 3g7s_A 128 LVVHSMLYENF 138 (549)
T ss_dssp EEEEGGGHHHH
T ss_pred EEEChHHHHHH
Confidence 98887655544
No 49
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=78.29 E-value=6.4 Score=39.44 Aligned_cols=88 Identities=9% Similarity=-0.011 Sum_probs=67.8
Q ss_pred eeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHhcCce
Q 042783 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FEINSLLQLIERYKVT 259 (525)
Q Consensus 181 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t 259 (525)
+..+|.+.+...+......+. ..++.++|++...+|-+.. ++..+++.+..|+..+...+ +...++..+++..++.
T Consensus 45 ~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~ 121 (541)
T 1v25_A 45 VHRTTYAEVYQRARRLMGGLR-ALGVGVGDRVATLGFNHFR--HLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDK 121 (541)
T ss_dssp EEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCS
T ss_pred CceecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHH--HHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCc
Confidence 457888888776655554443 4578899999999986654 33678899999999998765 6888999999999999
Q ss_pred EeecchHHHHHH
Q 042783 260 VAPVVPPIVLAI 271 (525)
Q Consensus 260 ~~~~~P~~l~~l 271 (525)
.++..+.+...+
T Consensus 122 ~vi~~~~~~~~~ 133 (541)
T 1v25_A 122 VLLFDPNLLPLV 133 (541)
T ss_dssp EEEECGGGHHHH
T ss_pred EEEEChhHHHHH
Confidence 999887665443
No 50
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=78.28 E-value=9.3 Score=38.35 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=73.4
Q ss_pred CccEEEeC---CC----CCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhH--HHHHHHHHHhCCeEeecCCC
Q 042783 47 SRPCLING---ST----GDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEF--VFSFLGASYRGAIATAANPF 117 (525)
Q Consensus 47 ~~~a~~~~---~~----~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~~~ 117 (525)
+.+|++.. .+ +..+|.+.+...+......+...++.++|++...+|-+..+ ...+++.+ .|+..+.++ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 67777642 12 36899999887776665543335788999999888865433 33456777 999998876 4
Q ss_pred CCHHHHHHHHHHcCccEEEECccchHHHhc
Q 042783 118 FTPAETCKQAKASGAKLIITKASYVDKVKD 147 (525)
Q Consensus 118 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 147 (525)
++++.+...+++.++++++..+.....+..
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 299 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILNK 299 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 688999999999999999999888776643
No 51
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=77.78 E-value=18 Score=36.23 Aligned_cols=98 Identities=18% Similarity=0.142 Sum_probs=73.2
Q ss_pred CCCccEEEe---CCC----CCeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHH---HHHHHHHhCCeEeec
Q 042783 45 VASRPCLIN---GST----GDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVF---SFLGASYRGAIATAA 114 (525)
Q Consensus 45 ~p~~~a~~~---~~~----~~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~---~~lA~~~~G~~~v~l 114 (525)
.++.+|++. +.+ +..+|.+.+...+...+.. .++.++|++...+|-+..+-. .+++.+..|+..+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 456677653 222 2689999998887776654 488999999999886554433 478888899998877
Q ss_pred CCCCCHHHHHHHHHHcCccEEEECccchHHHh
Q 042783 115 NPFFTPAETCKQAKASGAKLIITKASYVDKVK 146 (525)
Q Consensus 115 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 146 (525)
+. ..+..+...+++.+++++...+.....+.
T Consensus 266 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 296 (544)
T 3o83_A 266 PN-PEPLNCFSIIQRHQVNMASLVPSAVIMWL 296 (544)
T ss_dssp SS-CCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHCCCEEEechHHHHHHH
Confidence 54 67888889999999999999887765543
No 52
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=77.30 E-value=7.5 Score=39.28 Aligned_cols=89 Identities=15% Similarity=0.170 Sum_probs=67.9
Q ss_pred eeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHhcCce
Q 042783 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FEINSLLQLIERYKVT 259 (525)
Q Consensus 181 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t 259 (525)
...+|.+.+...+......+...++++++|++...+|-+..+ +..+++++..|+..+..++ +.+.++...++..++.
T Consensus 71 ~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~ 148 (570)
T 3c5e_A 71 ELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW--WLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAK 148 (570)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH--HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCS
T ss_pred eeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCe
Confidence 356888888777665555444223789999999999876543 3678999999999998765 6788899999999999
Q ss_pred EeecchHHHHHH
Q 042783 260 VAPVVPPIVLAI 271 (525)
Q Consensus 260 ~~~~~P~~l~~l 271 (525)
.++..+.....+
T Consensus 149 ~vi~~~~~~~~~ 160 (570)
T 3c5e_A 149 AIVAGDEVIQEV 160 (570)
T ss_dssp EEEEETTTHHHH
T ss_pred EEEechHHHHHH
Confidence 998877655544
No 53
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=77.15 E-value=5.7 Score=39.65 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=64.4
Q ss_pred EcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHhcCceEe
Q 042783 183 MLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FEINSLLQLIERYKVTVA 261 (525)
Q Consensus 183 ~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~ 261 (525)
.+|++.+...+......+. ..+++++|++...+|-+..+ +..+++++..|+..+..++ +.+.++...+++.++..+
T Consensus 48 ~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 124 (529)
T 2v7b_A 48 STTYGELEERARRFASALR-TLGVHPEERILLVMLDTVAL--PVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAV 124 (529)
T ss_dssp EEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSTHH--HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEE
T ss_pred CccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHHH--HHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEE
Confidence 5788888776655544333 45788999999999876543 3568899999999998765 688899999999999998
Q ss_pred ecchHHHH
Q 042783 262 PVVPPIVL 269 (525)
Q Consensus 262 ~~~P~~l~ 269 (525)
+..+....
T Consensus 125 i~~~~~~~ 132 (529)
T 2v7b_A 125 IASGALVQ 132 (529)
T ss_dssp EEEGGGHH
T ss_pred Eechhhhh
Confidence 88765543
No 54
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=76.40 E-value=4.9 Score=40.42 Aligned_cols=88 Identities=15% Similarity=0.059 Sum_probs=68.1
Q ss_pred eeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHhcCce
Q 042783 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FEINSLLQLIERYKVT 259 (525)
Q Consensus 181 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t 259 (525)
+..+|.+.+...+......+. ..+++++|++...+|-+.. ++..+++.+..|+..+...+ +...++...++..+++
T Consensus 48 ~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~ 124 (550)
T 3rix_A 48 EVNITYAEYFEMSVRLAEAMK-RYGLNTNHRIVVCSENSLQ--FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPT 124 (550)
T ss_dssp CCEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECSSCTT--THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCS
T ss_pred CcEeEHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEcCCccc--HHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCe
Confidence 446888888777655555443 4578899999999986654 33678899999999998765 6888999999999999
Q ss_pred EeecchHHHHHH
Q 042783 260 VAPVVPPIVLAI 271 (525)
Q Consensus 260 ~~~~~P~~l~~l 271 (525)
.++.....+..+
T Consensus 125 ~vi~~~~~~~~~ 136 (550)
T 3rix_A 125 VVFVSKKGLQKI 136 (550)
T ss_dssp EEEECGGGHHHH
T ss_pred EEEEcHHHHHHH
Confidence 999887665544
No 55
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=76.33 E-value=5.8 Score=39.69 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=66.8
Q ss_pred eeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHhcCce
Q 042783 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FEINSLLQLIERYKVT 259 (525)
Q Consensus 181 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t 259 (525)
+-.+|++.+...+......+. ..+++++|++...+|-+.. ++..+++.+..|+..+...+ ..+.++...++..++.
T Consensus 47 ~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~ 123 (536)
T 3ni2_A 47 GDVYTYADVELTARRVASGLN-KIGIQQGDVIMLFLPSSPE--FVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAK 123 (536)
T ss_dssp CCEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEE
T ss_pred CCEEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHH--HHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCE
Confidence 346788888777665555443 4578899999999987654 33678999999999998765 6888999999999999
Q ss_pred EeecchHHHHH
Q 042783 260 VAPVVPPIVLA 270 (525)
Q Consensus 260 ~~~~~P~~l~~ 270 (525)
.++..+.....
T Consensus 124 ~~i~~~~~~~~ 134 (536)
T 3ni2_A 124 LLITQACYYEK 134 (536)
T ss_dssp EEEECGGGTHH
T ss_pred EEEEChHHHHH
Confidence 99887654433
No 56
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=75.93 E-value=7.9 Score=38.51 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=64.9
Q ss_pred eEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHhcCceE
Q 042783 182 VMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FEINSLLQLIERYKVTV 260 (525)
Q Consensus 182 v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~ 260 (525)
..+|.+.+...+......+. ..++.++|++...+|-+.. ++..+++.+..|+..+..++ +....+..+++..++..
T Consensus 42 ~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 118 (517)
T 3r44_A 42 VRMTYAQMNALANRCADVLT-ALGIAKGDRVALLMPNSVE--FCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKV 118 (517)
T ss_dssp EEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSE
T ss_pred ceeeHHHHHHHHHHHHHHHH-HcCCCCcCEEEEEcCCCHH--HHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceE
Confidence 46888888776655554443 4578899999999997654 33678999999999998865 67888999999999999
Q ss_pred eecchHHH
Q 042783 261 APVVPPIV 268 (525)
Q Consensus 261 ~~~~P~~l 268 (525)
++..+...
T Consensus 119 vi~~~~~~ 126 (517)
T 3r44_A 119 VIYGAPSA 126 (517)
T ss_dssp EEECGGGH
T ss_pred EEECCchH
Confidence 88765443
No 57
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=75.89 E-value=6.8 Score=38.85 Aligned_cols=87 Identities=13% Similarity=0.062 Sum_probs=68.0
Q ss_pred eeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHhcCce
Q 042783 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FEINSLLQLIERYKVT 259 (525)
Q Consensus 181 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t 259 (525)
+..+|++.+...+......+. ..++.++|++...+|-+.. ++..+++.+..|+..+..++ .....+..+++..++.
T Consensus 29 ~~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~ 105 (509)
T 3ivr_A 29 GVRLTHRDYLARAERLASGLL-RDGVHTGDRVAILSQNCSE--MIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPS 105 (509)
T ss_dssp TEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEE
T ss_pred CcEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCce
Confidence 346888888777665555443 4578899999999987654 33678999999999998875 6888999999999999
Q ss_pred EeecchHHHHH
Q 042783 260 VAPVVPPIVLA 270 (525)
Q Consensus 260 ~~~~~P~~l~~ 270 (525)
.++..+.....
T Consensus 106 ~vi~~~~~~~~ 116 (509)
T 3ivr_A 106 VVVAGTDYRDI 116 (509)
T ss_dssp EEEECSTTHHH
T ss_pred EEEECcchhhh
Confidence 99988766554
No 58
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=75.80 E-value=5.3 Score=37.59 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=65.6
Q ss_pred CCccEEE---eCCCC----CeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCch-hHHHHHHHHHHhCCeEeecCCC
Q 042783 46 ASRPCLI---NGSTG----DVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVP-EFVFSFLGASYRGAIATAANPF 117 (525)
Q Consensus 46 p~~~a~~---~~~~~----~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~-~~~~~~lA~~~~G~~~v~l~~~ 117 (525)
.|.+|++ .+.+| ..+|++.+...+..++.. .++.++|++...+|-+. ..+..++..+..|+..+..++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~ 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc
Confidence 4555554 44444 689999998877666654 48899999999988553 3344556667788888777665
Q ss_pred CCHHHHHHHHHHcCccEEEECccchHHHh
Q 042783 118 FTPAETCKQAKASGAKLIITKASYVDKVK 146 (525)
Q Consensus 118 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 146 (525)
... ...+++.+++.+...+.....+.
T Consensus 113 ~~~---~~~i~~~~~t~~~~~P~~l~~ll 138 (358)
T 4gs5_A 113 ANP---LAGLDHADFDFVAMVPMQLQSIL 138 (358)
T ss_dssp SCT---TTTCSSCCCSEEEECHHHHHHHH
T ss_pred ccH---HHHHHHhCCeEEEcChHHHHHhh
Confidence 432 34567788888888877665553
No 59
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=74.14 E-value=9.5 Score=37.75 Aligned_cols=88 Identities=23% Similarity=0.194 Sum_probs=65.2
Q ss_pred eeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHhcCce
Q 042783 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FEINSLLQLIERYKVT 259 (525)
Q Consensus 181 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t 259 (525)
+..+|++.+...+......+. ..++.++|++...+|-+..+ +..+++.+..|+..+..++ ..+.++..++++.+++
T Consensus 27 ~~~~Ty~el~~~~~~~A~~L~-~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~ 103 (504)
T 1t5h_X 27 GLRLTHAELRARVEAVAARLH-ADGLRPQQRVAVVAPNSADV--VIAILALHRLGAVPALLNPRLKSAELAELIKRGEMT 103 (504)
T ss_dssp TEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCHHH--HHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCS
T ss_pred CceeEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHHH--HHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCc
Confidence 346788888776655544433 35788999999999876543 3678999999999998765 6788999999999999
Q ss_pred Eeec--chHHHHHH
Q 042783 260 VAPV--VPPIVLAI 271 (525)
Q Consensus 260 ~~~~--~P~~l~~l 271 (525)
.++. .+.....+
T Consensus 104 ~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 104 AAVIAVGRQVADAI 117 (504)
T ss_dssp EEEECC--CHHHHH
T ss_pred EEEEecchhhhhhh
Confidence 9887 55554444
No 60
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=73.98 E-value=12 Score=36.97 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=72.9
Q ss_pred CCCccEEEe---CCCC----CeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchh-HHHHHHHHHHhCCeEeecCC
Q 042783 45 VASRPCLIN---GSTG----DVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPE-FVFSFLGASYRGAIATAANP 116 (525)
Q Consensus 45 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~ 116 (525)
.++.+|++. +.+| ..+|++.+...+...... .++.++|++...+|-+.. .+..+++++..|+..+.++.
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVED---FNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHH---TTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHh---cCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 356666542 2223 679999988776665544 488999999999886533 34567888999999998875
Q ss_pred C--CCHHHHHHHHHHcCccEEEECccchHHHh
Q 042783 117 F--FTPAETCKQAKASGAKLIITKASYVDKVK 146 (525)
Q Consensus 117 ~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 146 (525)
. .++..+...+++.+++++...+.....+.
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 250 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMCL 250 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHHT
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 3 46788889999999999999888776553
No 61
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=72.57 E-value=9.5 Score=37.75 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=64.8
Q ss_pred eeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHhcCce
Q 042783 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FEINSLLQLIERYKVT 259 (525)
Q Consensus 181 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t 259 (525)
+-.+|.+.+...+......+. ..+++++|++...+|-+.. ++..+++.+..|+..+..++ ....++..+++..++.
T Consensus 26 ~~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~ 102 (503)
T 4fuq_A 26 GDKISYAELVARAGRVANVLV-ARGLQVGDRVAAQTEKSVE--ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPK 102 (503)
T ss_dssp CCEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCS
T ss_pred CcEEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHH--HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCc
Confidence 446888888777655554443 4478899999999987654 33678999999999998875 6888999999999999
Q ss_pred EeecchH
Q 042783 260 VAPVVPP 266 (525)
Q Consensus 260 ~~~~~P~ 266 (525)
.++..+.
T Consensus 103 ~vi~~~~ 109 (503)
T 4fuq_A 103 IVVCDPS 109 (503)
T ss_dssp EEEECGG
T ss_pred EEEECch
Confidence 9988764
No 62
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=71.92 E-value=9.9 Score=38.30 Aligned_cols=87 Identities=15% Similarity=0.046 Sum_probs=65.9
Q ss_pred eEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHhcCceE
Q 042783 182 VMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FEINSLLQLIERYKVTV 260 (525)
Q Consensus 182 v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~ 260 (525)
-.+|.+.+...+......+. ..+++++|++...+|-+.. ++..+++.+..|+..+...+ +....+..+++..++..
T Consensus 63 ~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~ 139 (563)
T 1amu_A 63 EQLTYHELNVKANQLARIFI-EKGIGKDTLVGIMMEKSID--LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARM 139 (563)
T ss_dssp EEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSE
T ss_pred ceecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCE
Confidence 35788887766555444333 3478899999999987654 33678999999999998765 67889999999999999
Q ss_pred eecchHHHHHH
Q 042783 261 APVVPPIVLAI 271 (525)
Q Consensus 261 ~~~~P~~l~~l 271 (525)
++..+.+...+
T Consensus 140 li~~~~~~~~~ 150 (563)
T 1amu_A 140 LLTQKHLVHLI 150 (563)
T ss_dssp EEECGGGHHHH
T ss_pred EEEcCchhhhh
Confidence 99887655443
No 63
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=70.12 E-value=11 Score=38.03 Aligned_cols=82 Identities=15% Similarity=0.064 Sum_probs=64.4
Q ss_pred eeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHhcCce
Q 042783 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FEINSLLQLIERYKVT 259 (525)
Q Consensus 181 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t 259 (525)
...+|.+.+...+......+. ..+++++|++...+|-+..+ +..+++.+..|+..+...+ +.+.++...++..++.
T Consensus 84 ~~~~Ty~eL~~~~~~~A~~L~-~~Gv~~Gd~V~l~~~~~~e~--~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~ 160 (580)
T 3etc_A 84 EKIFTFKDLKYYSDKAANFFV-KHGIGKGDYVMLTLKSRYDF--WYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLK 160 (580)
T ss_dssp EEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECTTCTHH--HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCC
T ss_pred EeEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHHH--HHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCC
Confidence 457888888776665555443 45789999999999976543 3678999999999998765 6888999999999999
Q ss_pred Eeecch
Q 042783 260 VAPVVP 265 (525)
Q Consensus 260 ~~~~~P 265 (525)
.+++.+
T Consensus 161 ~ii~~~ 166 (580)
T 3etc_A 161 MIVCIA 166 (580)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 988754
No 64
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=70.03 E-value=18 Score=35.82 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=73.5
Q ss_pred CCCccEEEe---CCCC----CeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhH-HHHHHHHHHhCCeEeecCC
Q 042783 45 VASRPCLIN---GSTG----DVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEF-VFSFLGASYRGAIATAANP 116 (525)
Q Consensus 45 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~ 116 (525)
.++.+|++. +.+| ..+|.+.+...+..++.. .++.+++++...+|-+..+ +..+++++..|+..+.++.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICAD---FPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHH---STTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh---cCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 355666542 3233 689999988777665544 5788999999998865433 4567888999999988765
Q ss_pred C--CCHHHHHHHHHHcCccEEEECccchHHHh
Q 042783 117 F--FTPAETCKQAKASGAKLIITKASYVDKVK 146 (525)
Q Consensus 117 ~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 146 (525)
. ..+..+...+++.+++++...+.....+.
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 249 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMCL 249 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 3 46788889999999999999988776654
No 65
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=68.59 E-value=46 Score=33.74 Aligned_cols=97 Identities=13% Similarity=0.102 Sum_probs=72.5
Q ss_pred CCCccEEEe---CCCC----CeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHH---HHHHHHHhCCeEeec
Q 042783 45 VASRPCLIN---GSTG----DVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVF---SFLGASYRGAIATAA 114 (525)
Q Consensus 45 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~---~~lA~~~~G~~~v~l 114 (525)
.++.+|++. +.+| ..+|.+.+...+......+ ++.+++++...+|-+..+-. .+++++..|+..+..
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc---CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 356777652 2222 6899999888777666554 78899999999885544332 478888899998877
Q ss_pred CCCCCHHHHHHHHHHcCccEEEECccchHHH
Q 042783 115 NPFFTPAETCKQAKASGAKLIITKASYVDKV 145 (525)
Q Consensus 115 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~ 145 (525)
+. .+...+...+++.+++++...+.....+
T Consensus 259 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l 288 (617)
T 3rg2_A 259 AD-PSATLCFPLIEKHQVNVTALVPPAVSLW 288 (617)
T ss_dssp SS-CCHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred CC-CCHHHHHHHHHHhCCcEEEcchHHHHHH
Confidence 54 5788888999999999999988776554
No 66
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=67.63 E-value=12 Score=38.50 Aligned_cols=84 Identities=23% Similarity=0.178 Sum_probs=64.7
Q ss_pred eeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEec-CCCHHHHHHHHHhcCce
Q 042783 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQ-KFEINSLLQLIERYKVT 259 (525)
Q Consensus 181 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t 259 (525)
...+|.+.|...+......+....+++++|++...+|.+..+ +..+++++..|+..+... .+.+..+...++..++.
T Consensus 111 ~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~--v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~ 188 (663)
T 1ry2_A 111 GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA--IITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSK 188 (663)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH--HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCS
T ss_pred eEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCe
Confidence 457888888776655544332135788999999999977643 367899999999988876 47889999999999999
Q ss_pred EeecchH
Q 042783 260 VAPVVPP 266 (525)
Q Consensus 260 ~~~~~P~ 266 (525)
.++....
T Consensus 189 ~li~~~~ 195 (663)
T 1ry2_A 189 VVITTDE 195 (663)
T ss_dssp EEEEESB
T ss_pred EEEEccc
Confidence 9887653
No 67
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=67.37 E-value=12 Score=38.57 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=64.1
Q ss_pred eeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEec-CCCHHHHHHHHHhcCce
Q 042783 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQ-KFEINSLLQLIERYKVT 259 (525)
Q Consensus 181 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t 259 (525)
...+|.+.|...+......+. ..+++++|++...+|.+..+ +..+++++..|+..+... .+.+..+...++..++.
T Consensus 105 ~~~lTY~eL~~~v~~lA~~L~-~~Gv~~Gd~V~i~~~~~~e~--vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~ 181 (652)
T 1pg4_A 105 SKHISYRELHRDVCRFANTLL-DLGIKKGDVVAIYMPMVPEA--AVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSR 181 (652)
T ss_dssp EEEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCS
T ss_pred eeEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHHH--HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCC
Confidence 457888888776655554433 45788999999999977643 367899999999988876 47889999999999999
Q ss_pred Eeecch
Q 042783 260 VAPVVP 265 (525)
Q Consensus 260 ~~~~~P 265 (525)
.++...
T Consensus 182 ~li~~~ 187 (652)
T 1pg4_A 182 LVITAD 187 (652)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 887754
No 68
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=67.23 E-value=13 Score=37.48 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=63.5
Q ss_pred EcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHhcCceEe
Q 042783 183 MLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FEINSLLQLIERYKVTVA 261 (525)
Q Consensus 183 ~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~ 261 (525)
.+|.+.+...+......+. ..+++++|++...+|-+..+ +..+++.+..|+..+...+ ....++..+++..++..+
T Consensus 100 ~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~ 176 (570)
T 4gr5_A 100 ELTYGALNERANRLAHRLV-GLGVAPGTLVGVHLERGFDM--VVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLL 176 (570)
T ss_dssp EEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred cEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHHH--HHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEE
Confidence 5788888776655544433 45788999999999876543 3678999999999998865 688899999999999998
Q ss_pred ecchHH
Q 042783 262 PVVPPI 267 (525)
Q Consensus 262 ~~~P~~ 267 (525)
+.....
T Consensus 177 i~~~~~ 182 (570)
T 4gr5_A 177 VTSRPL 182 (570)
T ss_dssp EECTTT
T ss_pred Eecchh
Confidence 877543
No 69
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=65.09 E-value=14 Score=36.73 Aligned_cols=82 Identities=13% Similarity=0.057 Sum_probs=62.2
Q ss_pred eeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHhcCce
Q 042783 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FEINSLLQLIERYKVT 259 (525)
Q Consensus 181 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t 259 (525)
+-.+|.+.+...+......+. ..++.++|++...++-+.. ++..+++++..|+..+...+ ..+..+..+++..+++
T Consensus 27 ~~~~Ty~el~~~~~~lA~~L~-~~g~~~gd~V~i~~~n~~~--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~ 103 (521)
T 3l8c_A 27 GERRTYGQLKRDSDSIAAFID-SLALLAKSPVLVFGAQTYD--MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPS 103 (521)
T ss_dssp TEEEEHHHHHHHHHHHHHHHH-HTCCCTTCCEEEEECSSHH--HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCS
T ss_pred CCeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCC
Confidence 345788888776655544433 4578899999999886653 33678999999999887764 6888999999999999
Q ss_pred Eeecch
Q 042783 260 VAPVVP 265 (525)
Q Consensus 260 ~~~~~P 265 (525)
.++...
T Consensus 104 ~ii~~~ 109 (521)
T 3l8c_A 104 LIIAIE 109 (521)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 887654
No 70
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=62.65 E-value=24 Score=35.63 Aligned_cols=89 Identities=11% Similarity=0.025 Sum_probs=67.6
Q ss_pred eeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecCC----CHHHHHHHHHhc
Q 042783 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQKF----EINSLLQLIERY 256 (525)
Q Consensus 181 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~l~~~ 256 (525)
+-.+|.+.+...+......+. ..+++++|++...+|-+.. ++..+++++..|+..+...+. ....+..+++..
T Consensus 38 ~~~~Ty~eL~~~~~~lA~~L~-~~gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~ 114 (590)
T 3kxw_A 38 EETMTYEQLDQHAKAIAATLQ-AEGAKPGDRVLLLFAPGLP--LIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNS 114 (590)
T ss_dssp EEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred eEEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchh--HHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhC
Confidence 457888888777655554443 4578899999999987654 336789999999999988653 346788889999
Q ss_pred CceEeecchHHHHHHH
Q 042783 257 KVTVAPVVPPIVLAIA 272 (525)
Q Consensus 257 ~~t~~~~~P~~l~~l~ 272 (525)
++..++..+.....+.
T Consensus 115 ~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 115 KPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCSEEEECHHHHHHHC
T ss_pred CCCEEEeCHHHHHHHH
Confidence 9999999888777654
No 71
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=61.82 E-value=22 Score=35.64 Aligned_cols=88 Identities=10% Similarity=0.013 Sum_probs=66.1
Q ss_pred eeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CC-------HHHHHHH
Q 042783 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FE-------INSLLQL 252 (525)
Q Consensus 181 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~-------~~~~~~~ 252 (525)
.-.+|.+.+...+......+. ..++.++|++...+|-+.. ++..+++++..|+..+...+ +. ...+...
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~ 123 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLL-SLNLKKGDRVALIAETSSE--FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGL 123 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHH-HTCCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHH--HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHH
Confidence 357888888877665555443 4578899999999997654 33678999999999998764 33 5788889
Q ss_pred HHhcCceEeecchHHHHHH
Q 042783 253 IERYKVTVAPVVPPIVLAI 271 (525)
Q Consensus 253 l~~~~~t~~~~~P~~l~~l 271 (525)
++..++..++........+
T Consensus 124 l~~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 124 LASCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHHHCCSEEEECGGGHHHH
T ss_pred HHhcCCCEEEecHHHHHHH
Confidence 9999999998877655443
No 72
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=60.18 E-value=28 Score=33.92 Aligned_cols=89 Identities=12% Similarity=0.049 Sum_probs=69.7
Q ss_pred eEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC----CCHHHHHHHHHhcC
Q 042783 182 VMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK----FEINSLLQLIERYK 257 (525)
Q Consensus 182 v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~ 257 (525)
..+|.+.+...+......+. ..+. ++|++...++-+..+ +..+++.+..|+..+...+ ....++..+++..+
T Consensus 57 ~~~Ty~el~~~~~~lA~~L~-~~g~-~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~ 132 (480)
T 3t5a_A 57 ITLTWSQLYRRTLNVAQELS-RCGS-TGDRVVISAPQGLEY--VVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSS 132 (480)
T ss_dssp EEEEHHHHHHHHHHHHHHHT-TSSC-TTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHC
T ss_pred EEEcHHHHHHHHHHHHHHHH-hcCC-CCCEEEEEcCCcHHH--HHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCC
Confidence 67899999888777666555 4455 899999998876543 3678999999999998754 35678899999999
Q ss_pred ceEeecchHHHHHHHcC
Q 042783 258 VTVAPVVPPIVLAIAKS 274 (525)
Q Consensus 258 ~t~~~~~P~~l~~l~~~ 274 (525)
+..++..+.....+...
T Consensus 133 ~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 133 PVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CSEEEECTTTHHHHHHT
T ss_pred CCEEEeChhHHHHHHHH
Confidence 99999998877766554
No 73
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=59.42 E-value=20 Score=38.91 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=66.0
Q ss_pred eeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHhcCce
Q 042783 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FEINSLLQLIERYKVT 259 (525)
Q Consensus 181 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t 259 (525)
+..+|++.+...+......+. ..+++++|++...+|-+.. ++..++..+..|+..+..++ +.+..+...+++.++.
T Consensus 86 ~~~~TY~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~ns~e--~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~ 162 (979)
T 3tsy_A 86 GHVYTYSDVHVISRQIAANFH-KLGVNQNDVVMLLLPNCPE--FVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTK 162 (979)
T ss_dssp CCEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECSSCHH--HHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEE
T ss_pred CcEEEHHHHHHHHHHHHHHHH-HcCCCCcCEEEEEeCCCHH--HHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCe
Confidence 346788888776655554443 4578899999999997643 33678999999999998765 6888999999999999
Q ss_pred EeecchHHH
Q 042783 260 VAPVVPPIV 268 (525)
Q Consensus 260 ~~~~~P~~l 268 (525)
.++..+.+.
T Consensus 163 ~vi~~~~~~ 171 (979)
T 3tsy_A 163 LIITEARYV 171 (979)
T ss_dssp EEEECSTTT
T ss_pred EEEEChHHH
Confidence 998876543
No 74
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=55.21 E-value=58 Score=27.79 Aligned_cols=92 Identities=11% Similarity=0.072 Sum_probs=53.0
Q ss_pred cEEEEe-cc-hhhHHHHHHHHHHHHHhCCeEEEec-CCCHHHHHHHHHhcCceEeec--c----hHH--HHHHHcCCCCC
Q 042783 210 DAILCV-LP-LFHIYALNSIMLCGLRAGAAILIMQ-KFEINSLLQLIERYKVTVAPV--V----PPI--VLAIAKSPETE 278 (525)
Q Consensus 210 d~~l~~-~p-l~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~--~----P~~--l~~l~~~~~~~ 278 (525)
.+++.. .+ =.|..|....-..--..|-.++... ...+..+.+.+.+++++.+.+ + ++. +..+.+.....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 344444 33 3477777344444445677776654 468899999999999997766 2 221 22222221111
Q ss_pred CcCcccceeEeeecCCCcHHHHHHH
Q 042783 279 KYDLSSIRILKSGAAPLGKELEDAV 303 (525)
Q Consensus 279 ~~~l~~lr~v~~gG~~l~~~~~~~~ 303 (525)
.. ...++ +++||.+++++..+.+
T Consensus 173 ~~-~~~v~-v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 173 KL-RDSVK-CMFGGAPVSDKWIEEI 195 (215)
T ss_dssp TC-GGGSE-EEEESSSCCHHHHHHH
T ss_pred CC-CCCCE-EEEECCCCCHHHHHHh
Confidence 10 01333 7889999998765543
No 75
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=51.85 E-value=85 Score=30.76 Aligned_cols=97 Identities=21% Similarity=0.327 Sum_probs=70.9
Q ss_pred CCCccEEEe---CCCC----CeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCch--hHHHHHHHHHHhCCeEeecC
Q 042783 45 VASRPCLIN---GSTG----DVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVP--EFVFSFLGASYRGAIATAAN 115 (525)
Q Consensus 45 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~ 115 (525)
.++.+|++. +.+| ..+|.+.+...+..+...+ ++.++|++...+|-.. .++..+++.+..|+..+..+
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 229 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG 229 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 456667642 3233 6899999998888777665 7889999988888543 23445788899999998775
Q ss_pred CCCCHHHHHHHHHHcCccEEEECccchHHHh
Q 042783 116 PFFTPAETCKQAKASGAKLIITKASYVDKVK 146 (525)
Q Consensus 116 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 146 (525)
....+.+...+ +.++.+++..+.....+.
T Consensus 230 -~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~ 258 (505)
T 3nyq_A 230 -RFSTEGAAREL-NDGATMLFGVPTMYHRIA 258 (505)
T ss_dssp -SCCHHHHHHHH-TTTCCEEEECHHHHHHHH
T ss_pred -CCChHHHHHHH-hhCCeEEEehHHHHHHHH
Confidence 46777777777 678999998887766543
No 76
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=51.64 E-value=29 Score=35.32 Aligned_cols=79 Identities=13% Similarity=-0.041 Sum_probs=59.9
Q ss_pred EcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHhcCceEe
Q 042783 183 MLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FEINSLLQLIERYKVTVA 261 (525)
Q Consensus 183 ~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~ 261 (525)
.+|++.+...+......+. ..+.++++++...++-+.. ++..+++.+..|+..+..++ .....+..+++..++..+
T Consensus 52 ~lTY~eL~~~a~~lA~~L~-~~Gv~~g~~V~i~~~~s~~--~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~v 128 (620)
T 4dg8_A 52 SVDYRQLLDSAEQLSDYLL-EHYPQPGVCLGVYGEYSRE--SITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLI 128 (620)
T ss_dssp EEEHHHHHHHHHHHHHHHH-HHCCSSCCEEEEESSSCHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEE
T ss_pred cCcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEE
Confidence 5788888766655544333 3468899999999986653 33678999999999998875 577788899999999988
Q ss_pred ecc
Q 042783 262 PVV 264 (525)
Q Consensus 262 ~~~ 264 (525)
+..
T Consensus 129 l~~ 131 (620)
T 4dg8_A 129 LDC 131 (620)
T ss_dssp EEC
T ss_pred Eec
Confidence 744
No 77
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=51.39 E-value=55 Score=30.19 Aligned_cols=91 Identities=16% Similarity=0.007 Sum_probs=55.7
Q ss_pred ccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCC-CCCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHH
Q 042783 48 RPCLINGSTGDVYTYGEVELTARKIASGLNKLG-IGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQ 126 (525)
Q Consensus 48 ~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g-i~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~ 126 (525)
++.+-..+-..+-||++.-.. .+...+.+.| +++|+.|.+....+-.-..+.++|...|..++.+-|...+......
T Consensus 36 ~i~~K~E~~~ptGSfK~R~a~--~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~ 113 (334)
T 3tbh_A 36 KVVLKMECENPMASVKDRLGF--AIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCL 113 (334)
T ss_dssp EEEEEEGGGSTTSBTHHHHHH--HHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHH
T ss_pred EEEEEeCCCCCccCcHHHHHH--HHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHH
Confidence 444443322233356554221 2223334455 4888876444455666777777888889987766565544555677
Q ss_pred HHHcCccEEEECcc
Q 042783 127 AKASGAKLIITKAS 140 (525)
Q Consensus 127 l~~~~~~~vi~~~~ 140 (525)
++..++.+++++..
T Consensus 114 ~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 114 LRIFGAEVILTPAA 127 (334)
T ss_dssp HHHTTCEEEEECGG
T ss_pred HHHCCCEEEEECCC
Confidence 88999999998754
No 78
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=48.31 E-value=41 Score=33.64 Aligned_cols=80 Identities=16% Similarity=0.070 Sum_probs=59.8
Q ss_pred eEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHhcCceE
Q 042783 182 VMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FEINSLLQLIERYKVTV 260 (525)
Q Consensus 182 v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~ 260 (525)
-.+|++.+...+......+. ..+. ++|++...+|-+..+ +..+++.+..|+..+...+ +...++..+++..++..
T Consensus 54 ~~~Ty~eL~~~~~~lA~~L~-~~g~-~gd~V~i~~~n~~~~--~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 129 (562)
T 3ite_A 54 EDWTYKKLNETANQVANLII-HASL-HGRAIAVSLDRSLIA--FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAM 129 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHH-HTTC-SSCEEEEECCSCHHH--HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSE
T ss_pred CCCCHHHHHHHHHHHHHHHH-hcCC-CCCEEEEEeCCCHHH--HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCE
Confidence 46788888776655544332 2356 699999999877543 3578999999999998765 68888999999999988
Q ss_pred eecch
Q 042783 261 APVVP 265 (525)
Q Consensus 261 ~~~~P 265 (525)
++...
T Consensus 130 ~i~~~ 134 (562)
T 3ite_A 130 AFVCD 134 (562)
T ss_dssp EEECT
T ss_pred EEEcc
Confidence 77653
No 79
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=48.03 E-value=81 Score=29.01 Aligned_cols=78 Identities=14% Similarity=-0.008 Sum_probs=53.1
Q ss_pred eEeHHHHHHHHHHH---HHHHHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEE
Q 042783 59 VYTYGEVELTARKI---ASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLI 135 (525)
Q Consensus 59 ~~Ty~el~~~~~~~---a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v 135 (525)
.+++.+........ -+.|...++++|++|+|....+.-..++.+|....|+.++.++.+ .++ ..+++..+++.+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEE
Confidence 45666644333222 223455689999999999888788888888877778877766543 343 467778888888
Q ss_pred EECc
Q 042783 136 ITKA 139 (525)
Q Consensus 136 i~~~ 139 (525)
+...
T Consensus 213 i~~~ 216 (348)
T 4eez_A 213 INSG 216 (348)
T ss_dssp EEC-
T ss_pred EeCC
Confidence 7653
No 80
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=45.14 E-value=79 Score=29.26 Aligned_cols=81 Identities=17% Similarity=0.090 Sum_probs=54.8
Q ss_pred CeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEE
Q 042783 58 DVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIIT 137 (525)
Q Consensus 58 ~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~ 137 (525)
.+=||++--. ...+.....+--+++|.+..+....+-.-..+.++|.+.|..+..+-|...+......++..+++++++
T Consensus 61 ptGSfK~RgA-~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v 139 (344)
T 3vc3_A 61 PTASIADRPA-YAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILT 139 (344)
T ss_dssp TTSBTTHHHH-HHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred CCCCcHHHHH-HHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEE
Confidence 3445554222 223333333323577776666666677778888888999998888777666666778899999999988
Q ss_pred Cc
Q 042783 138 KA 139 (525)
Q Consensus 138 ~~ 139 (525)
+.
T Consensus 140 ~~ 141 (344)
T 3vc3_A 140 DP 141 (344)
T ss_dssp CG
T ss_pred CC
Confidence 64
No 81
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=37.48 E-value=1.2e+02 Score=28.17 Aligned_cols=62 Identities=13% Similarity=0.029 Sum_probs=44.7
Q ss_pred HHHH--CCCCCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECc
Q 042783 75 GLNK--LGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKA 139 (525)
Q Consensus 75 ~L~~--~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~ 139 (525)
.|.+ .++++|++|+|....++-.+++.+|-...|+.++.++. +.+++ ..++..+++.++...
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVDAR 239 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEETT
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEecc
Confidence 3555 68999999999998778888888877554887666654 34443 455688898887654
No 82
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=37.24 E-value=1.2e+02 Score=27.87 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=51.2
Q ss_pred CeEeHHHHHHHHHH---HHHHHHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccE
Q 042783 58 DVYTYGEVELTARK---IASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKL 134 (525)
Q Consensus 58 ~~~Ty~el~~~~~~---~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 134 (525)
..+++.+....... .-+.|...++++|++|+|....++-.+++.+|-. .|+.++.++. +.+++ ..+++.+++.
T Consensus 138 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~-~Ga~Vi~~~~--~~~~~-~~~~~lGa~~ 213 (340)
T 3s2e_A 138 DKVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARA-MGLRVAAVDI--DDAKL-NLARRLGAEV 213 (340)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHH-TTCEEEEEES--CHHHH-HHHHHTTCSE
T ss_pred CCCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeC--CHHHH-HHHHHcCCCE
Confidence 35666665422221 1234555689999999999887778888877764 5887776654 34444 4567788888
Q ss_pred EEECc
Q 042783 135 IITKA 139 (525)
Q Consensus 135 vi~~~ 139 (525)
++...
T Consensus 214 ~i~~~ 218 (340)
T 3s2e_A 214 AVNAR 218 (340)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 77643
No 83
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=35.40 E-value=69 Score=36.01 Aligned_cols=84 Identities=14% Similarity=0.038 Sum_probs=63.2
Q ss_pred eeEcchHHHHHHHHHhhhcCCCCCccCCCcEEEEecchhhHHHHHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHhcCce
Q 042783 181 GVMLTHKGLVTSVAQQVDGENPNLYFTKEDAILCVLPLFHIYALNSIMLCGLRAGAAILIMQK-FEINSLLQLIERYKVT 259 (525)
Q Consensus 181 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t 259 (525)
+-.+|.+.+...+......+. ..+.++++++..+++-+.. ++..+++.+..|+..+..++ .....+..+++..++.
T Consensus 487 ~~~lTY~eL~~~a~~lA~~L~-~~Gv~~g~~V~i~~~~s~~--~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~ 563 (1304)
T 2vsq_A 487 GQTLSYRELDEEANRIARRLQ-KHGAGKGSVVALYTKRSLE--LVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAA 563 (1304)
T ss_dssp SCEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEECCCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCC
T ss_pred CeeEcHHHHHHHHHHHHHHHH-hcCcCCcCEEEEEeCCCHH--HHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCC
Confidence 345788888766655544333 3578899999999986653 33678999999999998875 5778899999999999
Q ss_pred EeecchHH
Q 042783 260 VAPVVPPI 267 (525)
Q Consensus 260 ~~~~~P~~ 267 (525)
.++..+..
T Consensus 564 ~vl~~~~~ 571 (1304)
T 2vsq_A 564 CLLTHQEM 571 (1304)
T ss_dssp EEEECSTT
T ss_pred EEEECcch
Confidence 88876543
No 84
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=33.56 E-value=1.3e+02 Score=27.66 Aligned_cols=77 Identities=9% Similarity=-0.014 Sum_probs=51.2
Q ss_pred EeHHHHHHHHHH---HHHHHHHC--CCCCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccE
Q 042783 60 YTYGEVELTARK---IASGLNKL--GIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKL 134 (525)
Q Consensus 60 ~Ty~el~~~~~~---~a~~L~~~--gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 134 (525)
+++.+....... .-+.|.+. ++++|++|++....+.-.+++.+|-..-|+.++.++. +.++ ...+++.+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~-~~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDR-LALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHH-HHHHHHcCCCE
Confidence 677665433222 12334443 7899999999988777888888887765777776654 3444 44667888888
Q ss_pred EEECc
Q 042783 135 IITKA 139 (525)
Q Consensus 135 vi~~~ 139 (525)
++...
T Consensus 220 ~i~~~ 224 (345)
T 3jv7_A 220 AVKSG 224 (345)
T ss_dssp EEECS
T ss_pred EEcCC
Confidence 77654
No 85
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=32.59 E-value=1.9e+02 Score=26.11 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=48.4
Q ss_pred eEeHHHHHHHHHHHHHHHHHCCC-CCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEE
Q 042783 59 VYTYGEVELTARKIASGLNKLGI-GQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIIT 137 (525)
Q Consensus 59 ~~Ty~el~~~~~~~a~~L~~~gi-~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~ 137 (525)
.-+|++.-.. .+...+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+......++..+++++++
T Consensus 43 tgSfK~R~a~--~~l~~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 119 (313)
T 2q3b_A 43 ANSVKDRIGV--AMLQAAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILT 119 (313)
T ss_dssp TSBTHHHHHH--HHHHHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred CCcHHHHHHH--HHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEe
Confidence 3455553322 22233344454 66776655 44455555566667789998777655444445566788999999998
Q ss_pred Ccc
Q 042783 138 KAS 140 (525)
Q Consensus 138 ~~~ 140 (525)
+..
T Consensus 120 ~~~ 122 (313)
T 2q3b_A 120 PGA 122 (313)
T ss_dssp CGG
T ss_pred CCC
Confidence 763
No 86
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=32.58 E-value=2.3e+02 Score=25.48 Aligned_cols=77 Identities=16% Similarity=0.142 Sum_probs=50.9
Q ss_pred eEeHHHHHHHHHH---HHHHHHHCCCCCCCEEEEEC-CCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccE
Q 042783 59 VYTYGEVELTARK---IASGLNKLGIGQRDVIMLLL-PNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKL 134 (525)
Q Consensus 59 ~~Ty~el~~~~~~---~a~~L~~~gi~~g~~V~i~~-~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 134 (525)
.+++.+....... .-+.|...++++|++|+|.. ..++-.+++.+|- ..|+.++.+. +.++ ...+++.+++.
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~ 199 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQ 199 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCE
Confidence 4566665433222 11234557899999999996 5667777777775 5688776553 3455 56778889988
Q ss_pred EEECcc
Q 042783 135 IITKAS 140 (525)
Q Consensus 135 vi~~~~ 140 (525)
++...+
T Consensus 200 ~i~~~~ 205 (321)
T 3tqh_A 200 CINYHE 205 (321)
T ss_dssp EEETTT
T ss_pred EEeCCC
Confidence 776543
No 87
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=31.89 E-value=1.7e+02 Score=26.52 Aligned_cols=63 Identities=21% Similarity=0.126 Sum_probs=42.5
Q ss_pred HHCC-CCCCC-EEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECcc
Q 042783 77 NKLG-IGQRD-VIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKAS 140 (525)
Q Consensus 77 ~~~g-i~~g~-~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~ 140 (525)
.+.| +++|. .|.. ...+-.-..+.++|.+.|..++.+-|...+......++..++++++++..
T Consensus 58 ~~~G~~~~~~~~vv~-assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 58 EKKGLIKPGESVLIE-PTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHTTSCCTTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 4455 45664 4444 44566666677778899998777655444455567888999999988753
No 88
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=31.79 E-value=1.1e+02 Score=28.50 Aligned_cols=61 Identities=7% Similarity=-0.003 Sum_probs=40.2
Q ss_pred HHHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCC-----CCHHHHHHHHHHcC--ccEEEEC
Q 042783 75 GLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPF-----FTPAETCKQAKASG--AKLIITK 138 (525)
Q Consensus 75 ~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~~~~~l~~~~--~~~vi~~ 138 (525)
.|...++++||.|.+..+....+ .-++...|+.++.++.. .+.+.+...+...+ .++|+..
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 34445788999998887765543 34556789887766532 36788888774434 6666643
No 89
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=30.30 E-value=1.8e+02 Score=27.83 Aligned_cols=63 Identities=19% Similarity=0.107 Sum_probs=44.8
Q ss_pred HHCCC-CCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECc
Q 042783 77 NKLGI-GQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKA 139 (525)
Q Consensus 77 ~~~gi-~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~ 139 (525)
.+.|. ++|....+....+-.-..+.++|.+.|..++.+-|...+......++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 45564 6775444445556677777778888999887666655555666788999999998864
No 90
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=29.54 E-value=2e+02 Score=25.79 Aligned_cols=79 Identities=18% Similarity=0.070 Sum_probs=47.8
Q ss_pred eEeHHHHHHHHHHHHHHHHHCCC-CCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEE
Q 042783 59 VYTYGEVELTARKIASGLNKLGI-GQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIIT 137 (525)
Q Consensus 59 ~~Ty~el~~~~~~~a~~L~~~gi-~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~ 137 (525)
.-+|++.-.. .+...+.+.|. ++|+.|.. ...+-.-..+.++|...|..++.+-|...+......++..+++++++
T Consensus 41 tgSfK~R~a~--~~l~~a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~ 117 (308)
T 2egu_A 41 GSSVKDRIAL--AMIEAAEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLT 117 (308)
T ss_dssp TSBTHHHHHH--HHHHHHHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEE
T ss_pred CCChHHHHHH--HHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEE
Confidence 4455544332 22223334453 66666655 44455555666677788998776655444444556779999999999
Q ss_pred Ccc
Q 042783 138 KAS 140 (525)
Q Consensus 138 ~~~ 140 (525)
+..
T Consensus 118 ~~~ 120 (308)
T 2egu_A 118 PGA 120 (308)
T ss_dssp CGG
T ss_pred CCC
Confidence 864
No 91
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=29.46 E-value=1.4e+02 Score=27.31 Aligned_cols=74 Identities=11% Similarity=-0.120 Sum_probs=48.2
Q ss_pred eEeHHHHHHHHHH---HHHHHHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEE
Q 042783 59 VYTYGEVELTARK---IASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLI 135 (525)
Q Consensus 59 ~~Ty~el~~~~~~---~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v 135 (525)
.+++.+....... .-+.|.+.++++|++|+|....++-.+++.+|- ..|+.++.+..+. +++ ..+++.+++.+
T Consensus 149 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~--~~~-~~~~~lGa~~v 224 (348)
T 3two_A 149 NAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNE--HKK-QDALSMGVKHF 224 (348)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSS--TTH-HHHHHTTCSEE
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCH--HHH-HHHHhcCCCee
Confidence 4666665422111 123455668999999999987667777777776 4688777765432 222 35567888888
Q ss_pred E
Q 042783 136 I 136 (525)
Q Consensus 136 i 136 (525)
+
T Consensus 225 ~ 225 (348)
T 3two_A 225 Y 225 (348)
T ss_dssp E
T ss_pred c
Confidence 7
No 92
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=28.82 E-value=1.2e+02 Score=27.86 Aligned_cols=60 Identities=20% Similarity=0.071 Sum_probs=42.8
Q ss_pred HHHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCC-eEeecCCCCCHHHHHHHHHHcCccEEEEC
Q 042783 75 GLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGA-IATAANPFFTPAETCKQAKASGAKLIITK 138 (525)
Q Consensus 75 ~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~~~~~l~~~~~~~vi~~ 138 (525)
.+...++++|++|+|+..-++-.+++.+|- ..|+ .++.++.. .++ ..++++.+++.++..
T Consensus 158 al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~~Vi~~~~~--~~~-~~~~~~lGa~~vi~~ 218 (352)
T 3fpc_A 158 GAELANIKLGDTVCVIGIGPVGLMSVAGAN-HLGAGRIFAVGSR--KHC-CDIALEYGATDIINY 218 (352)
T ss_dssp HHHHTTCCTTCCEEEECCSHHHHHHHHHHH-TTTCSSEEEECCC--HHH-HHHHHHHTCCEEECG
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCcEEEEECCC--HHH-HHHHHHhCCceEEcC
Confidence 356678999999999987667777777775 4687 56666542 333 456777888887754
No 93
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=28.58 E-value=2.1e+02 Score=26.11 Aligned_cols=60 Identities=20% Similarity=0.129 Sum_probs=34.7
Q ss_pred CCCCCCEEEEECCCch------hHHHHHHH-HHHhCCeEeecCCCC------------CHHHHHHHHHHcCccEEEECc
Q 042783 80 GIGQRDVIMLLLPNVP------EFVFSFLG-ASYRGAIATAANPFF------------TPAETCKQAKASGAKLIITKA 139 (525)
Q Consensus 80 gi~~g~~V~i~~~~~~------~~~~~~lA-~~~~G~~~v~l~~~~------------~~~~~~~~l~~~~~~~vi~~~ 139 (525)
-+++||+|+|++|.+. +-+-.... +-..|..++.-+.-. ..+++...+.+-++++|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 4789999999999752 11212222 223477776554321 133455566666777777754
No 94
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=28.19 E-value=2.9e+02 Score=24.70 Aligned_cols=64 Identities=22% Similarity=0.142 Sum_probs=41.9
Q ss_pred HHHCC-CCCCC--EEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECcc
Q 042783 76 LNKLG-IGQRD--VIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKAS 140 (525)
Q Consensus 76 L~~~g-i~~g~--~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~ 140 (525)
+.+.| +++|+ .|.. ...+-.-..+.++|.+.|..++.+-|...+......++..++.+++++..
T Consensus 51 a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 51 AEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 33444 46666 4444 44555556666777789997776555444455567788899999998764
No 95
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=27.84 E-value=2.2e+02 Score=26.10 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=34.9
Q ss_pred CCCCCCEEEEECCCchh------HHHHHHHHH-HhCCeEeecCCCC------------CHHHHHHHHHHcCccEEEECc
Q 042783 80 GIGQRDVIMLLLPNVPE------FVFSFLGAS-YRGAIATAANPFF------------TPAETCKQAKASGAKLIITKA 139 (525)
Q Consensus 80 gi~~g~~V~i~~~~~~~------~~~~~lA~~-~~G~~~v~l~~~~------------~~~~~~~~l~~~~~~~vi~~~ 139 (525)
-+++||+|++++|.+.- -+-.-...+ ..|..++.-+... ..+++...+.+-++++|++..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999998732 122222223 3577777543211 123455556666777777754
No 96
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=27.74 E-value=1.6e+02 Score=27.36 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=41.0
Q ss_pred HHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCC-eEeecCCCCCHHHHHHHHHHcCccEEEE
Q 042783 76 LNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGA-IATAANPFFTPAETCKQAKASGAKLIIT 137 (525)
Q Consensus 76 L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~~~~~l~~~~~~~vi~ 137 (525)
|...++++|++|+|....+.-.+++.+|- ..|+ .++.++. +.++ ..+++..+++.++.
T Consensus 175 l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 175 VDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTR--QATK-RRLAEEVGATATVD 233 (370)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECS--CHHH-HHHHHHHTCSEEEC
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHcCCCEEEC
Confidence 45568999999999988667777777775 5688 6666644 3443 44667788877764
No 97
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=27.51 E-value=2.2e+02 Score=26.18 Aligned_cols=90 Identities=17% Similarity=-0.016 Sum_probs=51.8
Q ss_pred ccEEEeCCCCCeEeHHHHHHHHHHHHHHHHHCC-CCCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHH
Q 042783 48 RPCLINGSTGDVYTYGEVELTARKIASGLNKLG-IGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQ 126 (525)
Q Consensus 48 ~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g-i~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~ 126 (525)
++.+-..+-+.+-||++.-.. ..+.. +.+.| +++|+.|..... +-.-..+.++|...|..++.+-|...+......
T Consensus 43 ~v~~K~E~~~ptGSfKdR~a~-~~l~~-a~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~ 119 (343)
T 2pqm_A 43 RILVKLEYFNPMSSVKDRVGF-NIVYQ-AIKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMI 119 (343)
T ss_dssp EEEEEEGGGSTTSBTHHHHHH-HHHHH-HHHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHH
T ss_pred EEEEEeccCCCCCChHHHHHH-HHHHH-HHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHH
Confidence 444433222334555554322 12222 33334 467776666654 545555666677888877766554444555678
Q ss_pred HHHcCccEEEECcc
Q 042783 127 AKASGAKLIITKAS 140 (525)
Q Consensus 127 l~~~~~~~vi~~~~ 140 (525)
++..++.+++++..
T Consensus 120 ~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 120 MKAFGAELILTEGK 133 (343)
T ss_dssp HHHTTCEEEEECGG
T ss_pred HHHCCCEEEEECCC
Confidence 88899999998763
No 98
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=26.96 E-value=2.3e+02 Score=25.74 Aligned_cols=63 Identities=10% Similarity=0.040 Sum_probs=42.3
Q ss_pred HHHHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECc
Q 042783 74 SGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKA 139 (525)
Q Consensus 74 ~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~ 139 (525)
..+...++++|++|++...-+.-.+++.+|...-...++.++. +.++ ..++++.+++.++...
T Consensus 151 ~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~--~~~k-~~~a~~lGa~~~i~~~ 213 (346)
T 4a2c_A 151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI--SSEK-LALAKSFGAMQTFNSS 213 (346)
T ss_dssp HHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEES--CHHH-HHHHHHTTCSEEEETT
T ss_pred HHHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEec--hHHH-HHHHHHcCCeEEEeCC
Confidence 3345568999999999988777777777665543334444443 3343 4667888988887654
No 99
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=26.72 E-value=2e+02 Score=26.41 Aligned_cols=63 Identities=11% Similarity=-0.022 Sum_probs=43.6
Q ss_pred HHHHCCCC-CCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECcc
Q 042783 75 GLNKLGIG-QRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKAS 140 (525)
Q Consensus 75 ~L~~~gi~-~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~ 140 (525)
.|.+.+++ +|++|+|....++-.+++.+|-. .|+.++.+..+ .+++....+..+++.++...+
T Consensus 171 ~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~~vi~~~~ 234 (357)
T 2cf5_A 171 PLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGADDYVIGSD 234 (357)
T ss_dssp HHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCSCEEETTC
T ss_pred HHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCceeecccc
Confidence 35566888 99999999876678888877765 58876655543 344444444788887776543
No 100
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=26.69 E-value=3.1e+02 Score=24.46 Aligned_cols=62 Identities=23% Similarity=0.168 Sum_probs=42.5
Q ss_pred HHCC-CCCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECc
Q 042783 77 NKLG-IGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKA 139 (525)
Q Consensus 77 ~~~g-i~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~ 139 (525)
.+.| +++|+.|.... .+-.-..+.++|.+.|..++.+-|...+......++..++.+++++.
T Consensus 53 ~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 53 EKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp HHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 3445 36777766665 35555566666778999877765554445556788899999999986
No 101
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=25.33 E-value=2.8e+02 Score=25.72 Aligned_cols=61 Identities=16% Similarity=0.034 Sum_probs=39.8
Q ss_pred HHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCC----CCHHHHHHHHHHc--CccEEEECc
Q 042783 76 LNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPF----FTPAETCKQAKAS--GAKLIITKA 139 (525)
Q Consensus 76 L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~~~~~l~~~--~~~~vi~~~ 139 (525)
+...++++||.|.+..+....+.. ++...|+.++.++.. ...+.+...++.. ++++|+...
T Consensus 64 ~~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 64 LRVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 334457899999988887666543 334478877766542 4678888887764 456665543
No 102
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=25.07 E-value=2.4e+02 Score=26.38 Aligned_cols=60 Identities=12% Similarity=0.043 Sum_probs=35.0
Q ss_pred CCCCCCEEEEECCCchh------HHHHHHHHH-HhCCeEeecCCCC------------CHHHHHHHHHHcCccEEEECc
Q 042783 80 GIGQRDVIMLLLPNVPE------FVFSFLGAS-YRGAIATAANPFF------------TPAETCKQAKASGAKLIITKA 139 (525)
Q Consensus 80 gi~~g~~V~i~~~~~~~------~~~~~lA~~-~~G~~~v~l~~~~------------~~~~~~~~l~~~~~~~vi~~~ 139 (525)
-+++||+|+|++|.+.- -+-.-...+ ..|..++.-+... ..+++...+.+-++++|++..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 57899999999998742 122222222 3577777553321 123444555556667777754
No 103
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=25.04 E-value=1.7e+02 Score=20.01 Aligned_cols=49 Identities=22% Similarity=0.189 Sum_probs=34.2
Q ss_pred hHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCCCCHHHHHHHHHhcCCCC
Q 042783 432 PAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFISKQVVFY 490 (525)
Q Consensus 432 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~ 490 (525)
..++++.|.+.|+|.+|..+.... ..++-+.. .+.+++.+.+.+.+...
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~-----D~ll~v~~-----~d~~~l~~~i~~~l~~~ 63 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEY-----DLIVKVET-----DTLKDLDQFITEKIRKM 63 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSC-----SEEEEEEE-----SSHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHhCCCCeeEEEEEcccC-----CEEEEEEE-----CCHHHHHHHHHHHhccC
Confidence 478999999999999999986322 23343332 56688888887665543
No 104
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=24.88 E-value=1.4e+02 Score=20.34 Aligned_cols=32 Identities=9% Similarity=-0.198 Sum_probs=20.1
Q ss_pred HCCCCCCCEEEEECCCchhHHHHHHHHHHhCC
Q 042783 78 KLGIGQRDVIMLLLPNVPEFVFSFLGASYRGA 109 (525)
Q Consensus 78 ~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 109 (525)
+.+..++..|.++|..+.....+...+...|.
T Consensus 35 ~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 35 TAVPDKNDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp HHCCCTTSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred HhCCCCCCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 33556666777777776666656555556665
No 105
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=24.54 E-value=2.4e+02 Score=25.93 Aligned_cols=62 Identities=15% Similarity=0.067 Sum_probs=43.7
Q ss_pred HHH-CCCCCCCEEEEECC-CchhHHHHHHHHHHhCCeE-eecCCCCCHHHHHHHHHHcCccEEEEC
Q 042783 76 LNK-LGIGQRDVIMLLLP-NVPEFVFSFLGASYRGAIA-TAANPFFTPAETCKQAKASGAKLIITK 138 (525)
Q Consensus 76 L~~-~gi~~g~~V~i~~~-~~~~~~~~~lA~~~~G~~~-v~l~~~~~~~~~~~~l~~~~~~~vi~~ 138 (525)
|.+ .++++|++|+|... .++-.+++.+|-. .|+.. +..+.....++....++..+++.++..
T Consensus 159 l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~ 223 (357)
T 1zsy_A 159 LMDFEQLQPGDSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDRPDIQKLSDRLKSLGAEHVITE 223 (357)
T ss_dssp HHHSSCCCTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEH
T ss_pred HHHHhccCCCCEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCccchHHHHHHHHhcCCcEEEec
Confidence 434 48999999999997 6678888887764 58744 444444444555567788899888754
No 106
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=24.28 E-value=1.5e+02 Score=27.48 Aligned_cols=62 Identities=21% Similarity=0.105 Sum_probs=41.7
Q ss_pred HHHHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECc
Q 042783 74 SGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKA 139 (525)
Q Consensus 74 ~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~ 139 (525)
..|.+.++++|++|+|....++-.+++.+|-. .|+.++.+..+ .+++ ..+++.+++.++...
T Consensus 185 ~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~-~Ga~Vi~~~~~--~~~~-~~a~~lGa~~vi~~~ 246 (369)
T 1uuf_A 185 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHA-MGAHVVAFTTS--EAKR-EAAKALGADEVVNSR 246 (369)
T ss_dssp HHHHHTTCCTTCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESS--GGGH-HHHHHHTCSEEEETT
T ss_pred HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCC--HHHH-HHHHHcCCcEEeccc
Confidence 34555689999999999886677777777754 58876555432 3333 344567888777543
No 107
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=24.24 E-value=2.7e+02 Score=25.45 Aligned_cols=60 Identities=13% Similarity=0.014 Sum_probs=34.7
Q ss_pred CCCCCCEEEEECCCchh------HHHHHHHHH-HhCCeEeecCCCC------------CHHHHHHHHHHcCccEEEECc
Q 042783 80 GIGQRDVIMLLLPNVPE------FVFSFLGAS-YRGAIATAANPFF------------TPAETCKQAKASGAKLIITKA 139 (525)
Q Consensus 80 gi~~g~~V~i~~~~~~~------~~~~~lA~~-~~G~~~v~l~~~~------------~~~~~~~~l~~~~~~~vi~~~ 139 (525)
-+++||+|+|++|.+.- -+-...+.+ ..|..++.-+... ..+++...+.+-++++|++..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999997742 122222222 3577777543211 123455555666677777754
No 108
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=23.31 E-value=2.8e+02 Score=23.14 Aligned_cols=57 Identities=11% Similarity=-0.075 Sum_probs=42.4
Q ss_pred CCEEEEECCCc----hhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECcc
Q 042783 84 RDVIMLLLPNV----PEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKAS 140 (525)
Q Consensus 84 g~~V~i~~~~~----~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~ 140 (525)
+.+|.+....+ +...++...+-..|..++.+....+.+++...++..++++|..+..
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSAL 148 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECC
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 34566655432 4444455555578999999999999999999999999999987653
No 109
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=23.20 E-value=3.3e+02 Score=25.10 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=43.8
Q ss_pred HHHHCCCC-CCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECcc
Q 042783 75 GLNKLGIG-QRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKAS 140 (525)
Q Consensus 75 ~L~~~gi~-~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~ 140 (525)
.|.+.+++ +|++|+|....++-..++.+|- ..|+.++.+.. +.+++....+..+++.++...+
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v~~~~~ 241 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVIST--SPSKKEEALKNFGADSFLVSRD 241 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CGGGHHHHHHTSCCSEEEETTC
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHhcCCceEEeccC
Confidence 35566888 9999999987667777777775 46887665543 3445555555788887776443
No 110
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=22.76 E-value=2.4e+02 Score=25.93 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=39.8
Q ss_pred HHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCC-eEeecCCCCCHHHHHHHHHHcCccEEEE
Q 042783 76 LNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGA-IATAANPFFTPAETCKQAKASGAKLIIT 137 (525)
Q Consensus 76 L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~~~~~l~~~~~~~vi~ 137 (525)
|...++++|++|+|....++-.+++.+|-. .|+ .++.++. +.+++ ..++..+++.++.
T Consensus 164 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~-~Ga~~Vi~~~~--~~~~~-~~a~~lGa~~vi~ 222 (356)
T 1pl8_A 164 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKA-MGAAQVVVTDL--SATRL-SKAKEIGADLVLQ 222 (356)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEEES--CHHHH-HHHHHTTCSEEEE
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEECC--CHHHH-HHHHHhCCCEEEc
Confidence 445589999999999876678888777764 587 5555543 33433 4556778876654
No 111
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=22.70 E-value=2.2e+02 Score=25.16 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=41.2
Q ss_pred HHhhhccCCCccEEEeCCCC----CeEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCchhHH
Q 042783 38 CFENISKVASRPCLINGSTG----DVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFV 98 (525)
Q Consensus 38 l~~~a~~~p~~~a~~~~~~~----~~~Ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~ 98 (525)
+.+..+..|+...+..+|+. ...|..++.+++.+.+.+|.+.|.+ ..++.-|+...+
T Consensus 21 ~~~i~~~lP~~~~iy~~D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~----~IVIACNTa~~~ 81 (269)
T 3ist_A 21 VREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIK----MLVIACNTATAA 81 (269)
T ss_dssp HHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCS----EEEECCHHHHHH
T ss_pred HHHHHHHCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCCccHH
Confidence 33344567888777665433 6789999999999999999997654 566666666653
No 112
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=22.45 E-value=2.3e+02 Score=27.85 Aligned_cols=67 Identities=13% Similarity=0.004 Sum_probs=42.0
Q ss_pred CCcEEEEecchhhHHHHH-HHHHHHHHhCCeEEEecC-C---CHHHHHHHHHhcC-----ceEeecchHHHHHHHcC
Q 042783 208 KEDAILCVLPLFHIYALN-SIMLCGLRAGAAILIMQK-F---EINSLLQLIERYK-----VTVAPVVPPIVLAIAKS 274 (525)
Q Consensus 208 ~~d~~l~~~pl~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~~-----~t~~~~~P~~l~~l~~~ 274 (525)
+--+++...|+++-..+. .-+..+|.+|.++++-++ . ....+.+++.+.. ++++.+.......|+.+
T Consensus 162 P~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKpse~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~~~~L~~~ 238 (521)
T 4e4g_A 162 PVGIGAGITPFNFPGMIPMWMFAPAIACGNAFILKPSERDPSVPIRLAELMIEAGLPAGILNVVNGDKGAVDAILTH 238 (521)
T ss_dssp ECCEEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCTTSTHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHTC
T ss_pred CCcEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCCCcCeEEEEeCChHHHHHHHhC
Confidence 445788888888766553 346789999999999764 2 3345666776642 23333334445666554
No 113
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=21.86 E-value=2.7e+02 Score=27.41 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=43.3
Q ss_pred HCC-CCCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECc
Q 042783 78 KLG-IGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKA 139 (525)
Q Consensus 78 ~~g-i~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~ 139 (525)
+.| +++|+.|... ..+-.-..+.++|...|..++.+-|...+......++..++.++++..
T Consensus 106 ~~g~~~~g~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 106 EQGLLKPGYTIIEP-TSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HcCCCCCCCEEEEe-CCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 345 5778877654 445555666678888899887666655455566788999999999865
No 114
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=21.74 E-value=2.2e+02 Score=26.83 Aligned_cols=55 Identities=22% Similarity=0.209 Sum_probs=39.4
Q ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHhCC-eEeecCCCCCHHHHHHHHHHcCccEEEEC
Q 042783 80 GIGQRDVIMLLLPNVPEFVFSFLGASYRGA-IATAANPFFTPAETCKQAKASGAKLIITK 138 (525)
Q Consensus 80 gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~~~~~l~~~~~~~vi~~ 138 (525)
++++|++|+|....++-.+++.+|- ..|+ .++.++. +.++ ..+++..+++.++..
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~~~~lGa~~vi~~ 265 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILK-HAGASKVILSEP--SEVR-RNLAKELGADHVIDP 265 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECS--CHHH-HHHHHHHTCSEEECT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHcCCCEEEcC
Confidence 7999999999988667777777776 5688 6666653 3343 346677788777653
No 115
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=21.52 E-value=3.2e+02 Score=26.81 Aligned_cols=49 Identities=8% Similarity=-0.006 Sum_probs=35.0
Q ss_pred CCcEEEEecchhhHHHHHH-HHHHHHHhCCeEEEecC----CCHHHHHHHHHhc
Q 042783 208 KEDAILCVLPLFHIYALNS-IMLCGLRAGAAILIMQK----FEINSLLQLIERY 256 (525)
Q Consensus 208 ~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 256 (525)
+--+++...|+++-..+.. -+..+|.+|.++++-++ .....+.+++.+.
T Consensus 150 P~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~ll~ea 203 (517)
T 3r31_A 150 PLGVCVGIGAWNYPQQIACWKAAPALVAGNAMVFKPSENTPLGALKIAEILIEA 203 (517)
T ss_dssp ECSEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHT
T ss_pred CccEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEcCcccHHHHHHHHHHHHHh
Confidence 4458888899888766533 46888999999999763 3445566777665
No 116
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=21.31 E-value=3.4e+02 Score=24.61 Aligned_cols=63 Identities=17% Similarity=0.116 Sum_probs=43.7
Q ss_pred HHCC-CCCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEECcc
Q 042783 77 NKLG-IGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKAS 140 (525)
Q Consensus 77 ~~~g-i~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~ 140 (525)
.+.| +++++.|.... .+-.-..+.++|.+.|..++.+-|...+......++..+++++++...
T Consensus 65 ~~~g~l~~~~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 65 EADGLLRPGATILEPT-SGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHcCCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3444 46777766654 455556667777888988776655554555567888999999999753
No 117
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=21.25 E-value=2e+02 Score=19.43 Aligned_cols=49 Identities=24% Similarity=0.148 Sum_probs=33.7
Q ss_pred hHHHHHHHhcCCCcceEEEecccCCCCCCeEEEEEEeCCCCCCCHHHHHHHHHhcCCCC
Q 042783 432 PAELEALLLSHSSITDAAVVPMKDDAAGEVPVAFVVKSNDSQITEDEIKQFISKQVVFY 490 (525)
Q Consensus 432 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~ 490 (525)
..++++.|.++|+|.+|..+.... ..++-+.. .+.+++.+.+.+.+...
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~-----d~l~~v~~-----~d~~~l~~~~~~~l~~~ 63 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVY-----DIVVKVEA-----DSMDKLKDFVTNTIRKL 63 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSC-----SEEEEEEC-----SSHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHhCCCCeEEEEEEeccC-----CEEEEEEE-----CCHHHHHHHHHHHhcCC
Confidence 378899999999999999986322 23344332 45678888887666544
No 118
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=21.16 E-value=2.4e+02 Score=26.38 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=38.5
Q ss_pred HHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCC-eEeecCCCCCHHHHHHHHHHcCccEE
Q 042783 76 LNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGA-IATAANPFFTPAETCKQAKASGAKLI 135 (525)
Q Consensus 76 L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~~~~~l~~~~~~~v 135 (525)
|...++++|++|+|...-++-.+++.+|-. .|+ .++.++. +.+++ ..++..+++++
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqlAk~-~Ga~~Vi~~~~--~~~~~-~~a~~lGa~~i 234 (398)
T 1kol_A 178 AVTAGVGPGSTVYVAGAGPVGLAAAASARL-LGAAVVIVGDL--NPARL-AHAKAQGFEIA 234 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEEES--CHHHH-HHHHHTTCEEE
T ss_pred HHHcCCCCCCEEEEECCcHHHHHHHHHHHH-CCCCeEEEEcC--CHHHH-HHHHHcCCcEE
Confidence 445689999999999876677788777764 587 4555543 34444 45577888743
No 119
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=21.02 E-value=2.5e+02 Score=25.58 Aligned_cols=54 Identities=7% Similarity=-0.058 Sum_probs=38.0
Q ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHh-CCeEeecCCCCCHHHHHHHHHHcCccEEEE
Q 042783 80 GIGQRDVIMLLLPNVPEFVFSFLGASYR-GAIATAANPFFTPAETCKQAKASGAKLIIT 137 (525)
Q Consensus 80 gi~~g~~V~i~~~~~~~~~~~~lA~~~~-G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~ 137 (525)
++ +|++|+|....++-.+++.+|-... |+.++.+.. +.+++ ..+++.+++.++.
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~ 222 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISR--SKKHR-DFALELGADYVSE 222 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECS--CHHHH-HHHHHHTCSEEEC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeC--CHHHH-HHHHHhCCCEEec
Confidence 78 9999999998667888888876543 887666553 34444 4456677777654
No 120
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=20.96 E-value=3e+02 Score=24.95 Aligned_cols=58 Identities=17% Similarity=0.078 Sum_probs=40.3
Q ss_pred HHHCCCCCCCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEEEE
Q 042783 76 LNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIIT 137 (525)
Q Consensus 76 L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~ 137 (525)
|.+.++++|++|+|....++-..++.+|. ..|+.++.+.. +.+++. .++..+++.++.
T Consensus 157 l~~~~~~~g~~VlV~GaG~vG~~~~~~a~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~~d 214 (339)
T 1rjw_A 157 LKVTGAKPGEWVAIYGIGGLGHVAVQYAK-AMGLNVVAVDI--GDEKLE-LAKELGADLVVN 214 (339)
T ss_dssp HHHHTCCTTCEEEEECCSTTHHHHHHHHH-HTTCEEEEECS--CHHHHH-HHHHTTCSEEEC
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEeC--CHHHHH-HHHHCCCCEEec
Confidence 44458999999999998777877777775 46887766654 344443 445677776553
No 121
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=20.74 E-value=1.6e+02 Score=22.95 Aligned_cols=51 Identities=12% Similarity=-0.042 Sum_probs=29.0
Q ss_pred CCEEEEECCCchhHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHHcCccEE
Q 042783 84 RDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLI 135 (525)
Q Consensus 84 g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v 135 (525)
-|.|.++.| .....-++..|...|...+.+.+....+++...++..+.+++
T Consensus 71 ~Dlvii~vp-~~~v~~v~~~~~~~g~~~i~i~~~~~~~~l~~~a~~~Gi~~i 121 (145)
T 2duw_A 71 VDMVDVFRN-SEAAWGVAQEAIAIGAKTLWLQLGVINEQAAVLAREAGLSVV 121 (145)
T ss_dssp CSEEECCSC-STHHHHHHHHHHHHTCCEEECCTTCCCHHHHHHHHTTTCEEE
T ss_pred CCEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHcCCEEE
Confidence 355666666 334444444566666655555555556666666666666543
No 122
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=20.67 E-value=3.4e+02 Score=24.95 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=39.9
Q ss_pred HHCCCCCCCEEEEECCCchhHHHHHHHHHHhCC-eEeecCCCCCHHHHHHHHHHcCccEEEEC
Q 042783 77 NKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGA-IATAANPFFTPAETCKQAKASGAKLIITK 138 (525)
Q Consensus 77 ~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~~~~~l~~~~~~~vi~~ 138 (525)
...++++|++|+|....++-.+++.+|-. .|+ .++.++. +.+++ ..++..+++.++..
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~~Vi~~~~--~~~~~-~~a~~lGa~~vi~~ 242 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKV-CGASIIIAVDI--VESRL-ELAKQLGATHVINS 242 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHH-HTCSEEEEEES--CHHHH-HHHHHHTCSEEEET
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEECC--CHHHH-HHHHHcCCCEEecC
Confidence 34589999999999876677777777764 577 4555543 34443 45577788877764
No 123
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=20.61 E-value=4.7e+02 Score=25.48 Aligned_cols=49 Identities=6% Similarity=0.011 Sum_probs=34.4
Q ss_pred CCcEEEEecchhhHHHHH-HHHHHHHHhCCeEEEecC-C---CHHHHHHHHHhc
Q 042783 208 KEDAILCVLPLFHIYALN-SIMLCGLRAGAAILIMQK-F---EINSLLQLIERY 256 (525)
Q Consensus 208 ~~d~~l~~~pl~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 256 (525)
+--+++...|+++-..+. .-+..+|.+|.++++-++ . ....+.+++.+.
T Consensus 157 P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~ea 210 (501)
T 1uxt_A 157 PLGVVAAITPFNYPLFDAVNKITYSFIYGNAVVVKPSISDPLPAAMAVKALLDA 210 (501)
T ss_dssp ECSEEEEECCTTSTTHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eccEEEEECCCccHHHHHHHHHHHHHHcCCEEEEeCCCCchHHHHHHHHHHHHh
Confidence 445888999998865553 457899999999999664 2 334456666653
No 124
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=20.18 E-value=3.5e+02 Score=26.08 Aligned_cols=69 Identities=7% Similarity=0.020 Sum_probs=49.1
Q ss_pred HHHHHHHHCC-CCCCCEEEEECCCchhHHHHHHHHHH----hC--CeEeecCCCCC-H------HHHHHHHHHcCccEEE
Q 042783 71 KIASGLNKLG-IGQRDVIMLLLPNVPEFVFSFLGASY----RG--AIATAANPFFT-P------AETCKQAKASGAKLII 136 (525)
Q Consensus 71 ~~a~~L~~~g-i~~g~~V~i~~~~~~~~~~~~lA~~~----~G--~~~v~l~~~~~-~------~~~~~~l~~~~~~~vi 136 (525)
++...+.+.+ +.++++|++.+.-+.++++++..+.. .| ...+.++.... . +.+..+++..+..+.+
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v 83 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCET 83 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEE
Confidence 4555666654 57899999999999999988887776 34 56677777765 3 2345667777877776
Q ss_pred ECc
Q 042783 137 TKA 139 (525)
Q Consensus 137 ~~~ 139 (525)
..-
T Consensus 84 ~~~ 86 (464)
T 3a2k_A 84 AQI 86 (464)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
No 125
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=20.15 E-value=4.2e+02 Score=25.72 Aligned_cols=49 Identities=10% Similarity=-0.011 Sum_probs=34.2
Q ss_pred CCcEEEEecchhhHHHHH-HHHHHHHHhCCeEEEecC-C---CHHHHHHHHHhc
Q 042783 208 KEDAILCVLPLFHIYALN-SIMLCGLRAGAAILIMQK-F---EINSLLQLIERY 256 (525)
Q Consensus 208 ~~d~~l~~~pl~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 256 (525)
+--+++...|+++...+. .-+..+|.+|.++++-++ . ....+.+++.+.
T Consensus 142 P~GVv~~I~pwN~P~~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~l~~~a 195 (490)
T 2ve5_A 142 PLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEA 195 (490)
T ss_dssp ECSEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cccEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHh
Confidence 446888889998877663 346889999999999764 2 334455666554
No 126
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=20.01 E-value=4.3e+02 Score=23.87 Aligned_cols=46 Identities=9% Similarity=0.031 Sum_probs=24.2
Q ss_pred CCCCCEEEEECCCchhHHHHHHHHHHhCCeEeecC--CC----CCHHHHHHHHHH
Q 042783 81 IGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAAN--PF----FTPAETCKQAKA 129 (525)
Q Consensus 81 i~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~--~~----~~~~~~~~~l~~ 129 (525)
+++||.|.+..+........ +...|+.++.++ .+ ...+.+...++.
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 141 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEE 141 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHH
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHh
Confidence 34667766665544433332 455566655554 22 245666665553
Done!