Query 042785
Match_columns 604
No_of_seqs 146 out of 264
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 16:30:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vfx_A Mitotic spindle assembl 100.0 2.8E-31 9.5E-36 259.0 19.6 189 7-224 8-202 (206)
2 4aez_B MAD2, mitotic spindle c 100.0 9.1E-29 3.1E-33 241.4 18.7 190 8-226 7-203 (203)
3 3abd_A Mitotic spindle assembl 99.9 3.5E-23 1.2E-27 204.9 13.9 187 6-220 20-219 (227)
4 2g9w_A Conserved hypothetical 95.2 0.023 7.7E-07 50.7 5.3 78 380-461 7-88 (138)
5 1sd4_A Penicillinase repressor 94.8 0.038 1.3E-06 47.5 5.5 76 380-460 8-87 (126)
6 2ve8_A FTSK, DNA translocase F 94.5 0.025 8.7E-07 47.4 3.6 52 382-435 7-58 (73)
7 1okr_A MECI, methicillin resis 94.0 0.061 2.1E-06 46.0 5.1 68 380-453 8-77 (123)
8 1p6r_A Penicillinase repressor 92.8 0.091 3.1E-06 42.6 4.0 54 380-436 7-62 (82)
9 3hrs_A Metalloregulator SCAR; 92.7 0.1 3.5E-06 50.2 4.8 67 386-461 6-73 (214)
10 1jgs_A Multiple antibiotic res 92.2 0.18 6.3E-06 43.2 5.4 76 378-459 30-105 (138)
11 2gxg_A 146AA long hypothetical 92.2 0.19 6.4E-06 43.4 5.5 75 379-460 34-108 (146)
12 2d1h_A ST1889, 109AA long hypo 91.9 0.15 5.1E-06 41.9 4.3 63 397-461 34-98 (109)
13 3oop_A LIN2960 protein; protei 91.8 0.19 6.5E-06 43.6 5.0 77 378-460 33-109 (143)
14 4hbl_A Transcriptional regulat 91.6 0.17 5.7E-06 44.6 4.5 77 379-461 38-114 (149)
15 1ub9_A Hypothetical protein PH 91.5 0.26 8.8E-06 40.2 5.3 72 387-461 18-89 (100)
16 2fbh_A Transcriptional regulat 91.5 0.26 8.8E-06 42.4 5.5 75 379-458 34-108 (146)
17 2fa5_A Transcriptional regulat 91.2 0.22 7.4E-06 44.0 4.9 74 380-459 47-120 (162)
18 2pg4_A Uncharacterized protein 91.1 0.14 5E-06 42.4 3.4 69 387-460 17-87 (95)
19 2frh_A SARA, staphylococcal ac 91.1 0.34 1.2E-05 42.1 5.9 80 378-461 33-112 (127)
20 3bpv_A Transcriptional regulat 91.1 0.21 7.2E-06 42.7 4.5 74 379-458 26-99 (138)
21 2fbi_A Probable transcriptiona 90.7 0.32 1.1E-05 41.6 5.3 73 380-458 34-106 (142)
22 2bv6_A MGRA, HTH-type transcri 90.6 0.24 8.2E-06 42.8 4.5 77 380-462 35-111 (142)
23 3bro_A Transcriptional regulat 90.6 0.23 7.9E-06 42.6 4.3 73 379-455 31-103 (141)
24 1lj9_A Transcriptional regulat 90.5 0.36 1.2E-05 41.6 5.5 75 379-459 26-100 (144)
25 3bj6_A Transcriptional regulat 90.4 0.3 1E-05 42.6 5.0 73 379-457 37-109 (152)
26 1q1h_A TFE, transcription fact 90.4 0.17 5.9E-06 43.0 3.3 68 386-455 19-89 (110)
27 3eco_A MEPR; mutlidrug efflux 90.1 0.38 1.3E-05 41.3 5.3 78 379-460 28-105 (139)
28 3s2w_A Transcriptional regulat 90.1 0.4 1.4E-05 42.5 5.5 76 379-460 47-122 (159)
29 3cjn_A Transcriptional regulat 90.1 0.33 1.1E-05 42.9 5.0 73 380-458 50-122 (162)
30 3f3x_A Transcriptional regulat 90.0 0.31 1.1E-05 42.3 4.7 74 380-460 35-108 (144)
31 1fx7_A Iron-dependent represso 90.0 0.29 9.9E-06 47.2 4.9 54 380-436 4-59 (230)
32 2a61_A Transcriptional regulat 89.9 0.38 1.3E-05 41.5 5.1 74 380-459 31-104 (145)
33 1on2_A Transcriptional regulat 89.9 0.27 9.2E-06 43.1 4.3 50 384-435 6-56 (142)
34 3ech_A MEXR, multidrug resista 89.9 0.34 1.2E-05 42.0 4.9 76 378-459 33-108 (142)
35 3g3z_A NMB1585, transcriptiona 89.8 0.4 1.4E-05 41.6 5.2 76 378-459 27-102 (145)
36 2rdp_A Putative transcriptiona 89.7 0.41 1.4E-05 41.6 5.2 76 379-460 39-114 (150)
37 2nyx_A Probable transcriptiona 89.5 0.46 1.6E-05 42.8 5.6 73 379-457 42-114 (168)
38 1s3j_A YUSO protein; structura 89.3 0.45 1.5E-05 41.6 5.2 73 379-457 34-106 (155)
39 1tbx_A ORF F-93, hypothetical 89.2 0.46 1.6E-05 39.3 4.9 73 380-461 6-82 (99)
40 2qww_A Transcriptional regulat 89.2 0.44 1.5E-05 41.6 5.1 75 380-460 39-115 (154)
41 3e6m_A MARR family transcripti 89.1 0.51 1.7E-05 42.0 5.5 75 380-460 51-125 (161)
42 3jth_A Transcription activator 89.1 0.52 1.8E-05 39.0 5.2 58 398-461 35-92 (98)
43 3fm5_A Transcriptional regulat 89.1 0.36 1.2E-05 42.3 4.4 77 379-460 36-112 (150)
44 2qvo_A Uncharacterized protein 89.0 0.47 1.6E-05 39.5 4.9 72 383-460 13-85 (95)
45 2k4b_A Transcriptional regulat 88.9 0.38 1.3E-05 41.6 4.3 56 378-436 31-88 (99)
46 2x4h_A Hypothetical protein SS 88.9 0.82 2.8E-05 39.7 6.6 54 380-435 11-65 (139)
47 3k0l_A Repressor protein; heli 88.6 0.48 1.7E-05 42.2 5.0 76 379-460 43-118 (162)
48 2hr3_A Probable transcriptiona 88.6 0.43 1.5E-05 41.3 4.5 75 381-460 34-108 (147)
49 3nqo_A MARR-family transcripti 88.6 0.49 1.7E-05 43.8 5.2 76 380-459 39-114 (189)
50 3bja_A Transcriptional regulat 88.6 0.38 1.3E-05 41.0 4.1 75 379-459 30-104 (139)
51 3tgn_A ADC operon repressor AD 88.4 0.44 1.5E-05 41.2 4.4 75 379-460 35-109 (146)
52 2h09_A Transcriptional regulat 88.3 0.72 2.5E-05 41.0 5.9 47 387-435 41-88 (155)
53 3hsr_A HTH-type transcriptiona 88.2 0.37 1.3E-05 41.9 3.9 76 379-460 33-108 (140)
54 1z91_A Organic hydroperoxide r 88.1 0.36 1.2E-05 41.8 3.8 72 379-456 37-108 (147)
55 3deu_A Transcriptional regulat 88.1 0.48 1.6E-05 42.9 4.7 77 379-460 50-126 (166)
56 3cdh_A Transcriptional regulat 87.8 0.52 1.8E-05 41.3 4.6 74 380-459 41-114 (155)
57 2eth_A Transcriptional regulat 87.8 0.69 2.4E-05 40.7 5.4 74 380-459 42-115 (154)
58 2nnn_A Probable transcriptiona 87.7 0.54 1.8E-05 40.1 4.5 75 379-459 35-109 (140)
59 3boq_A Transcriptional regulat 87.6 0.35 1.2E-05 42.6 3.4 76 380-460 45-120 (160)
60 2fbk_A Transcriptional regulat 87.2 0.3 1E-05 44.5 2.8 78 379-459 66-143 (181)
61 3u2r_A Regulatory protein MARR 87.0 0.6 2E-05 41.8 4.6 79 378-460 42-120 (168)
62 2pex_A Transcriptional regulat 86.9 0.43 1.5E-05 41.8 3.6 75 379-459 44-118 (153)
63 3bdd_A Regulatory protein MARR 86.7 0.58 2E-05 40.0 4.2 71 380-456 29-99 (142)
64 2dk5_A DNA-directed RNA polyme 86.7 1.1 3.7E-05 38.3 5.8 64 378-444 16-80 (91)
65 2qq9_A Diphtheria toxin repres 86.4 0.55 1.9E-05 45.3 4.3 51 383-436 7-59 (226)
66 2obp_A Putative DNA-binding pr 85.9 1.4 4.8E-05 38.3 6.1 77 380-461 14-93 (96)
67 2fxa_A Protease production reg 85.7 0.83 2.8E-05 43.3 5.1 78 379-462 45-122 (207)
68 1sfx_A Conserved hypothetical 85.7 0.64 2.2E-05 37.9 3.8 61 382-449 20-80 (109)
69 3cuo_A Uncharacterized HTH-typ 85.4 1 3.4E-05 36.7 4.8 57 399-461 38-94 (99)
70 1u2w_A CADC repressor, cadmium 85.2 0.98 3.4E-05 39.4 5.0 57 398-460 55-111 (122)
71 3kp7_A Transcriptional regulat 84.9 0.61 2.1E-05 40.8 3.5 74 380-459 36-110 (151)
72 2b0l_A GTP-sensing transcripti 84.9 1.3 4.3E-05 38.3 5.4 67 388-458 30-98 (102)
73 3jw4_A Transcriptional regulat 84.6 1 3.5E-05 39.2 4.8 78 379-460 38-115 (148)
74 3pqk_A Biofilm growth-associat 84.5 0.67 2.3E-05 38.7 3.4 58 398-461 35-92 (102)
75 4fx0_A Probable transcriptiona 84.4 1.1 3.8E-05 40.0 5.0 76 380-459 31-108 (148)
76 4b8x_A SCO5413, possible MARR- 84.3 1.3 4.6E-05 39.3 5.5 75 380-458 33-107 (147)
77 3nrv_A Putative transcriptiona 84.1 1 3.5E-05 39.1 4.5 75 379-459 37-111 (148)
78 2p8t_A Hypothetical protein PH 83.5 0.75 2.6E-05 44.9 3.7 68 383-462 16-83 (200)
79 2lkp_A Transcriptional regulat 83.5 1.5 5E-05 37.4 5.2 62 384-455 34-95 (119)
80 1qbj_A Protein (double-strande 83.3 1.3 4.6E-05 37.1 4.7 43 396-441 24-66 (81)
81 2kko_A Possible transcriptiona 82.9 1.3 4.4E-05 37.8 4.6 59 398-462 37-95 (108)
82 3f6o_A Probable transcriptiona 82.9 1.2 4E-05 38.5 4.4 59 398-462 30-88 (118)
83 2jsc_A Transcriptional regulat 82.7 1.3 4.5E-05 38.4 4.6 58 398-461 33-90 (118)
84 1hsj_A Fusion protein consisti 82.5 1.1 3.7E-05 46.7 4.8 82 376-461 398-479 (487)
85 2oqg_A Possible transcriptiona 82.2 1.5 5.3E-05 36.7 4.8 58 398-461 33-90 (114)
86 1r1t_A Transcriptional repress 81.5 2 6.8E-05 37.7 5.4 56 398-459 58-113 (122)
87 3f6v_A Possible transcriptiona 81.3 2.2 7.4E-05 39.1 5.8 58 398-461 70-127 (151)
88 2vn2_A DNAD, chromosome replic 80.1 2.4 8.2E-05 37.6 5.5 78 379-458 29-111 (128)
89 2htj_A P fimbrial regulatory p 79.4 2 7E-05 34.6 4.4 44 398-444 13-56 (81)
90 1qgp_A Protein (double strande 79.2 2.1 7.3E-05 35.2 4.5 50 389-441 21-70 (77)
91 4ham_A LMO2241 protein; struct 78.8 1.8 6E-05 38.5 4.2 63 396-462 34-100 (134)
92 2ek5_A Predicted transcription 78.6 2.1 7.1E-05 38.2 4.6 61 398-462 26-91 (129)
93 1r1u_A CZRA, repressor protein 78.5 2.8 9.7E-05 35.3 5.2 57 398-460 38-94 (106)
94 1p4x_A Staphylococcal accessor 78.3 1.8 6E-05 42.9 4.4 82 377-462 29-110 (250)
95 2cfx_A HTH-type transcriptiona 76.4 3.3 0.00011 36.7 5.3 74 384-462 7-87 (144)
96 2pn6_A ST1022, 150AA long hypo 76.1 3.6 0.00012 36.4 5.4 62 399-462 17-87 (150)
97 3df8_A Possible HXLR family tr 76.1 1.9 6.6E-05 37.1 3.5 46 400-451 43-88 (111)
98 1p4x_A Staphylococcal accessor 75.2 2.9 0.0001 41.3 5.0 80 379-462 155-234 (250)
99 1ku9_A Hypothetical protein MJ 75.1 1.7 5.9E-05 37.1 3.0 51 380-434 24-74 (152)
100 2hzt_A Putative HTH-type trans 75.0 3 0.0001 35.4 4.4 52 398-451 26-77 (107)
101 3by6_A Predicted transcription 74.3 3.7 0.00013 36.3 5.0 46 396-445 31-77 (126)
102 2heo_A Z-DNA binding protein 1 73.5 2.4 8E-05 33.8 3.2 34 398-433 24-57 (67)
103 1z7u_A Hypothetical protein EF 72.9 4.4 0.00015 34.6 5.0 62 384-452 24-86 (112)
104 2fsw_A PG_0823 protein; alpha- 72.4 3.3 0.00011 35.1 4.0 53 398-452 37-89 (107)
105 2y75_A HTH-type transcriptiona 72.0 4.6 0.00016 35.2 4.9 60 397-463 24-87 (129)
106 2zkz_A Transcriptional repress 71.6 4.3 0.00015 34.0 4.5 57 398-461 40-96 (99)
107 2cyy_A Putative HTH-type trans 70.9 4.5 0.00015 36.1 4.8 74 384-462 9-89 (151)
108 1i1g_A Transcriptional regulat 70.7 5.4 0.00018 34.7 5.1 74 384-462 6-86 (141)
109 2iut_A DNA translocase FTSK; n 70.4 0.89 3E-05 50.7 0.0 52 382-435 500-551 (574)
110 1bja_A Transcription regulator 67.8 13 0.00045 32.3 6.8 80 362-459 4-84 (95)
111 2dbb_A Putative HTH-type trans 67.0 8.4 0.00029 34.1 5.7 74 384-462 11-91 (151)
112 1yyv_A Putative transcriptiona 66.9 4.9 0.00017 35.8 4.1 52 398-451 47-98 (131)
113 3cta_A Riboflavin kinase; stru 66.6 7.1 0.00024 37.3 5.5 75 384-461 9-86 (230)
114 3r0a_A Putative transcriptiona 66.2 5.8 0.0002 34.6 4.4 52 381-435 25-76 (123)
115 2ius_A DNA translocase FTSK; n 65.8 1.3 4.3E-05 48.7 0.0 50 383-434 448-497 (512)
116 4aik_A Transcriptional regulat 65.0 7.5 0.00026 34.7 5.0 71 379-454 28-98 (151)
117 3k2z_A LEXA repressor; winged 64.8 5.6 0.00019 37.2 4.3 60 384-445 7-68 (196)
118 2w25_A Probable transcriptiona 64.8 6.2 0.00021 35.0 4.3 55 384-443 9-67 (150)
119 1xmk_A Double-stranded RNA-spe 63.8 6.8 0.00023 32.8 4.1 48 398-452 24-72 (79)
120 3sxy_A Transcriptional regulat 63.6 7.7 0.00026 36.5 5.0 64 396-463 32-96 (218)
121 1y0u_A Arsenical resistance op 63.6 4.4 0.00015 33.4 2.9 37 397-435 41-77 (96)
122 1oyi_A Double-stranded RNA-bin 63.1 4.3 0.00015 34.5 2.8 34 400-435 31-64 (82)
123 2f2e_A PA1607; transcription f 62.7 5.3 0.00018 36.0 3.5 51 398-452 36-86 (146)
124 3tqn_A Transcriptional regulat 62.7 5 0.00017 34.6 3.2 46 396-445 29-75 (113)
125 2di3_A Bacterial regulatory pr 61.8 7.7 0.00026 37.0 4.7 67 396-464 24-109 (239)
126 2ia0_A Putative HTH-type trans 61.7 8.7 0.0003 35.5 4.9 74 384-462 19-106 (171)
127 2co5_A Viral protein F93; vira 59.9 9 0.00031 33.0 4.3 74 385-462 12-87 (99)
128 2k02_A Ferrous iron transport 59.5 4.9 0.00017 34.4 2.5 36 397-434 14-49 (87)
129 4a5n_A Uncharacterized HTH-typ 58.8 7.9 0.00027 34.9 3.9 52 398-451 38-89 (131)
130 1xn7_A Hypothetical protein YH 58.7 5.4 0.00019 33.1 2.6 36 397-434 14-49 (78)
131 2cg4_A Regulatory protein ASNC 58.3 11 0.00037 33.5 4.7 74 384-462 10-91 (152)
132 3l7w_A Putative uncharacterize 58.2 6.9 0.00024 33.4 3.3 46 413-458 38-83 (108)
133 3k69_A Putative transcription 56.6 6.9 0.00024 36.2 3.2 64 396-462 25-88 (162)
134 1ylf_A RRF2 family protein; st 56.4 13 0.00046 33.4 5.1 63 396-462 27-89 (149)
135 2p5v_A Transcriptional regulat 55.8 12 0.00042 33.6 4.7 74 384-462 12-94 (162)
136 2hs5_A Putative transcriptiona 55.6 12 0.00041 36.1 4.9 64 396-463 48-112 (239)
137 2v7f_A RPS19, RPS19E SSU ribos 54.9 9.9 0.00034 35.3 4.0 75 381-460 46-136 (150)
138 2fu4_A Ferric uptake regulatio 54.5 9.6 0.00033 30.4 3.4 36 398-433 32-70 (83)
139 1v4r_A Transcriptional repress 54.4 2.6 8.9E-05 35.4 -0.0 45 397-445 32-77 (102)
140 1hw1_A FADR, fatty acid metabo 54.2 13 0.00044 35.2 4.8 46 396-445 27-73 (239)
141 3u1d_A Uncharacterized protein 54.1 17 0.00058 34.0 5.4 70 386-458 34-107 (151)
142 2e1c_A Putative HTH-type trans 53.8 14 0.00049 34.1 4.9 75 383-462 28-109 (171)
143 2v79_A DNA replication protein 53.7 14 0.00049 33.3 4.8 76 380-457 30-110 (135)
144 3neu_A LIN1836 protein; struct 53.6 7.2 0.00025 34.3 2.7 45 398-446 35-80 (125)
145 2jt1_A PEFI protein; solution 53.5 8.3 0.00029 32.0 2.9 35 399-435 24-58 (77)
146 3c7j_A Transcriptional regulat 50.7 16 0.00054 35.3 4.8 63 396-462 46-109 (237)
147 3ic7_A Putative transcriptiona 50.2 5.6 0.00019 35.1 1.4 56 396-457 31-87 (126)
148 2xzm_T RPS19E; ribosome, trans 49.6 23 0.00079 33.5 5.5 72 375-446 46-134 (155)
149 3t8r_A Staphylococcus aureus C 47.0 16 0.00055 32.8 4.0 63 398-463 27-89 (143)
150 3ihu_A Transcriptional regulat 46.4 23 0.0008 33.3 5.2 61 396-462 36-99 (222)
151 3f8b_A Transcriptional regulat 44.2 18 0.00063 31.3 3.8 48 412-459 44-92 (116)
152 1uly_A Hypothetical protein PH 43.2 18 0.00063 34.2 3.9 52 384-441 22-73 (192)
153 2wte_A CSA3; antiviral protein 41.9 17 0.00057 35.9 3.5 50 380-434 150-199 (244)
154 2xzm_8 RPS25E,; ribosome, tran 41.8 21 0.00072 33.4 3.9 50 384-435 47-97 (143)
155 3u5c_Z RP45, S31, YS23, 40S ri 41.8 17 0.00058 32.5 3.2 62 366-435 32-93 (108)
156 3c1d_A Protein ORAA, regulator 41.4 14 0.00047 34.0 2.7 69 384-453 5-94 (159)
157 3elk_A Putative transcriptiona 41.3 19 0.00067 31.4 3.5 64 396-461 27-94 (117)
158 2qc0_A Uncharacterized protein 40.0 25 0.00085 36.5 4.6 47 397-446 309-355 (373)
159 3eqx_A FIC domain containing t 39.5 25 0.00087 36.7 4.6 48 396-446 308-355 (373)
160 3lmm_A Uncharacterized protein 39.3 7 0.00024 43.3 0.4 107 324-438 435-567 (583)
161 1xma_A Predicted transcription 36.5 35 0.0012 30.9 4.5 76 384-460 43-122 (145)
162 2wv0_A YVOA, HTH-type transcri 36.1 23 0.00079 34.3 3.5 44 398-445 32-76 (243)
163 1yg2_A Gene activator APHA; vi 36.0 31 0.0011 31.7 4.2 49 412-462 34-85 (179)
164 2w48_A Sorbitol operon regulat 35.9 20 0.00068 36.0 3.0 34 397-432 19-52 (315)
165 1mkm_A ICLR transcriptional re 35.1 14 0.0005 35.6 1.8 45 399-445 23-69 (249)
166 2ia2_A Putative transcriptiona 34.5 19 0.00065 35.2 2.6 46 398-445 35-81 (265)
167 2g7u_A Transcriptional regulat 34.2 17 0.00057 35.4 2.1 45 399-445 29-74 (257)
168 2dql_A PEX protein; circadian 34.1 29 0.00098 30.2 3.4 48 412-459 53-102 (115)
169 2esh_A Conserved hypothetical 33.8 33 0.0011 29.5 3.7 48 413-460 46-94 (118)
170 2xrn_A HTH-type transcriptiona 33.1 15 0.00051 35.5 1.5 46 399-446 21-69 (241)
171 3edp_A LIN2111 protein; APC883 32.8 24 0.00081 34.1 2.9 45 398-446 31-76 (236)
172 3lwf_A LIN1550 protein, putati 32.8 35 0.0012 31.6 3.9 63 398-463 43-105 (159)
173 2p4w_A Transcriptional regulat 32.1 34 0.0012 32.7 3.9 47 398-446 27-75 (202)
174 3f8m_A GNTR-family protein tra 31.6 27 0.00092 34.0 3.1 44 398-446 34-78 (248)
175 3eet_A Putative GNTR-family tr 30.7 27 0.00094 34.5 3.0 44 398-445 51-95 (272)
176 3iz6_V 40S ribosomal protein S 30.6 34 0.0012 30.6 3.2 62 366-435 33-94 (108)
177 3b73_A PHIH1 repressor-like pr 30.0 45 0.0015 29.3 4.0 58 398-462 26-83 (111)
178 3r4k_A Transcriptional regulat 29.8 21 0.00071 34.9 2.0 47 398-446 20-69 (260)
179 1r7j_A Conserved hypothetical 29.1 52 0.0018 27.7 4.1 35 400-436 21-55 (95)
180 3bwg_A Uncharacterized HTH-typ 28.6 32 0.0011 33.2 3.0 43 398-444 27-70 (239)
181 2fq3_A Transcription regulator 28.3 47 0.0016 29.4 3.7 43 388-432 56-98 (104)
182 3u5c_T 40S ribosomal protein S 27.9 62 0.0021 30.2 4.6 60 375-434 42-117 (144)
183 2yu3_A DNA-directed RNA polyme 27.1 66 0.0022 27.8 4.4 56 378-436 33-88 (95)
184 3rkx_A Biotin-[acetyl-COA-carb 26.6 38 0.0013 34.6 3.3 45 398-446 18-63 (323)
185 2o0m_A Transcriptional regulat 26.5 14 0.00047 37.7 0.0 45 384-433 22-66 (345)
186 4esb_A Transcriptional regulat 26.0 52 0.0018 28.5 3.6 72 384-459 11-87 (115)
187 3i4p_A Transcriptional regulat 26.0 51 0.0017 29.7 3.7 74 384-462 5-88 (162)
188 1j5y_A Transcriptional regulat 25.6 86 0.0029 28.9 5.3 42 390-433 25-69 (187)
189 1xd7_A YWNA; structural genomi 24.3 68 0.0023 28.5 4.2 58 401-462 25-82 (145)
190 3cuq_A Vacuolar-sorting protei 24.0 45 0.0015 33.2 3.2 112 304-432 74-199 (234)
191 4ev0_A Transcription regulator 23.6 76 0.0026 28.4 4.4 50 400-458 164-213 (216)
192 3iz6_S 40S ribosomal protein S 22.7 45 0.0016 31.2 2.7 60 375-434 45-119 (146)
193 1lva_A Selenocysteine-specific 22.0 2.3E+02 0.0079 27.6 7.8 111 300-439 136-254 (258)
194 2qlz_A Transcription factor PF 21.6 30 0.001 34.0 1.3 51 398-450 24-76 (232)
195 1ufm_A COP9 complex subunit 4; 21.5 79 0.0027 26.4 3.7 47 396-444 27-73 (84)
196 1sfu_A 34L protein; protein/Z- 21.5 88 0.003 26.2 3.9 49 386-436 16-64 (75)
197 1u5t_A Appears to BE functiona 20.2 1.4E+02 0.0048 29.7 5.8 111 304-432 93-212 (233)
198 2o0y_A Transcriptional regulat 20.2 35 0.0012 33.2 1.5 46 398-445 37-84 (260)
199 2hoe_A N-acetylglucosamine kin 20.1 50 0.0017 33.7 2.7 51 388-444 26-78 (380)
No 1
>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus, mitosis, anaphase, cell cycle, CE division, spindle checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB: 2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A
Probab=99.97 E-value=2.8e-31 Score=258.99 Aligned_cols=189 Identities=15% Similarity=0.263 Sum_probs=157.1
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccchhhh------HhhcCCCChhHHHHHHHHhcccceEE
Q 042785 7 KEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEMK------IKKLMPMDAESRVYDALQKKYLKTLL 80 (604)
Q Consensus 7 ~~~~ITeqQSl~lVk~LL~vAISsIlYLRGLFPEe~F~dr~v~gLsLK------IKkLlp~d~EsgVfDALeKgYLK~Lv 80 (604)
+.+.||+++|+.+|.+||.+||++|||+|||||++.|..++.+|+.+. ++.++. +...++.+||.+|+|++|+
T Consensus 8 ~~~~itlk~s~~iv~efl~~ain~ILY~RgiYP~e~F~~~k~y~l~v~~sr~p~l~~YI~-~~l~~l~~~L~~g~v~klv 86 (206)
T 2vfx_A 8 REQGITARGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLN-NVVEQLKDWLYKSSVQKLV 86 (206)
T ss_dssp CCCSBCHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEETTEEEEEECCHHHHHHHH-HHHHHHHHHHHTTCEEEEE
T ss_pred ccceeeHHHHHHHHHHHHHHHHHHHHHhccCCChHHhHHHHHcCceeeEecCHHHHHHHH-HHHHHHHHHHHhCceeEEE
Confidence 456899999999999999999999999999999999999999998762 222221 1236899999999999999
Q ss_pred EEEEecCCCceeEEEEEEEEeecCCCCceeEEEeecCCcccCcccccccccccCHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 042785 81 FCVCEAVEGPMIEEYAFSFSYSDSDSQEISMNINRTGNKKKGGTFKCNTTTEITTTQMRSSACKMVRTLVQLMRTLDRMP 160 (604)
Q Consensus 81 LvIy~~~ddpVIEsYtFsFsYs~~gg~eVsm~l~stGnkk~~~t~~~~~~s~~Tl~qIRkqI~~LIRqLi~Ltq~L~pLP 160 (604)
|+|++.++++++|+|+|+|+|...+.. + + ....++..+++++++++||+|++++++||+||
T Consensus 87 lvI~~~~~~~~lEr~~Fd~~~~~~~~~----------~---~------~~~~~~~~ei~~eira~l~qi~~s~~~Lp~L~ 147 (206)
T 2vfx_A 87 VVISNIESGEVLERWQFDIESDKTAKD----------D---S------APREKSQKAIQDEIRSVIRQITATVTFLPLLE 147 (206)
T ss_dssp EEEEETTTCCEEEEEEEEEEECTTC----------------C------CCBSCCHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred EEEEeCCCCceEEEEEEEeeccCCccc----------c---c------cCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999988899999999999864320 0 0 01346788999999999999999999999999
Q ss_pred cceeEEEEEEEecCCCCCCCCCCCcccCCccCCCCCCCCCCceeEeeeecCCCeeEEEEEEEec
Q 042785 161 EERTILMKLFYYDDVTPVDYEPPFFRCCSEEEAHNPWTKNPLKMEVGNVNSKHFVLALKVKSVL 224 (604)
Q Consensus 161 deR~lsmKLlYyDDvTP~DYEPPGFk~asd~e~~y~~~knp~kv~LGs~sTghH~V~LkV~Svl 224 (604)
+++.+.|.+ |+++ ..+.|++|.+++ +. +..|++.+.+|+|+|++|+|.+.|.--.
T Consensus 148 ~~ctF~i~v-~t~~---~~~~P~~W~~sd---~~--~i~~~~~v~lrs~sT~~h~v~~~V~y~~ 202 (206)
T 2vfx_A 148 VSCSFDLLI-YTDK---DLVVPEKWEESG---PQ--FITNSEEVRLRSFTTTIHKVNSMVAYKI 202 (206)
T ss_dssp SCEEEEEEE-EECT---TSCCCTTCCCCC---CC--CCCSEEEEECCCEECSSEEEEEEEEEEC
T ss_pred CCcEEEEEE-EEcC---CCCCCCCcccCc---cc--ccCCCcEEeeeEEecCCeEEEEEEEEec
Confidence 999999965 5544 347888998774 43 4568999999999999999999998755
No 2
>4aez_B MAD2, mitotic spindle checkpoint component MAD2; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=9.1e-29 Score=241.42 Aligned_cols=190 Identities=14% Similarity=0.247 Sum_probs=145.7
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccchhhh------HhhcCCCChhHHHHHHHHhcccceEEE
Q 042785 8 EAEITEQDSLLLTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEMK------IKKLMPMDAESRVYDALQKKYLKTLLF 81 (604)
Q Consensus 8 ~~~ITeqQSl~lVk~LL~vAISsIlYLRGLFPEe~F~dr~v~gLsLK------IKkLlp~d~EsgVfDALeKgYLK~LvL 81 (604)
.+.||++||+.+|.+||.+||++|||+|||||++.|..++.+|+.+. ++..+. +...++.+||.+|+|++|++
T Consensus 7 ~~~itlkgS~~iv~eFl~~aInsILY~RgIYP~e~F~~~rky~l~v~~sr~p~l~~YI~-~~l~~v~~wL~~g~v~klvl 85 (203)
T 4aez_B 7 RTNFSAKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIR-KIVSQLHKWMFAKKIQKLIL 85 (203)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEETTEEEEEECCHHHHHHHH-HHHHHHHHHHHTTCEEEEEE
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccccCChHHchHhhhcCccceeecCHHHHHHHH-HHHHHHHHHHHhCCceEEEE
Confidence 46799999999999999999999999999999999999999998762 111111 12368999999999999999
Q ss_pred EEEecCCCceeEEEEEEEEeecCCCCceeEEEeecCCcccCcccccccccccCHHH-HHHHHHHHHHHHHHHhhhcCCCC
Q 042785 82 CVCEAVEGPMIEEYAFSFSYSDSDSQEISMNINRTGNKKKGGTFKCNTTTEITTTQ-MRSSACKMVRTLVQLMRTLDRMP 160 (604)
Q Consensus 82 vIy~~~ddpVIEsYtFsFsYs~~gg~eVsm~l~stGnkk~~~t~~~~~~s~~Tl~q-IRkqI~~LIRqLi~Ltq~L~pLP 160 (604)
+|++.++++++|+|.|+|.|...+. .+. . ....+..+ ++++++++||+|++++++||+||
T Consensus 86 vI~~~~t~~~lEr~~Fdv~~~~~~~---------~~d-----~-----~~~k~~~e~iq~eira~lrqItasvt~Lp~L~ 146 (203)
T 4aez_B 86 VITSKCSGEDLERWQFNVEMVDTAD---------QFQ-----N-----IGNKEDELRVQKEIQALIAQITATVTFLPQLE 146 (203)
T ss_dssp EEEETTTCCEEEEEEEEEEECC----------------------------CHHHHHHHHHHHHHHHHHHHHGGGTSCCCC
T ss_pred EEEcCCCCceEEEEEEeccccCccc---------ccc-----c-----cccccHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999988999999999999954321 000 0 01134556 99999999999999999999999
Q ss_pred cceeEEEEEEEecCCCCCCCCCCCcccCCccCCCCCCCCCCceeEeeeecCCCeeEEEEEEEecCC
Q 042785 161 EERTILMKLFYYDDVTPVDYEPPFFRCCSEEEAHNPWTKNPLKMEVGNVNSKHFVLALKVKSVLDP 226 (604)
Q Consensus 161 deR~lsmKLlYyDDvTP~DYEPPGFk~asd~e~~y~~~knp~kv~LGs~sTghH~V~LkV~Svldp 226 (604)
+++.+.+ |.|+++. -..|..|.+++ +. ++.|++.+.+++|+|+.|+|...|.--.+|
T Consensus 147 ~~ctF~v-lvyt~~d---a~vp~~W~~sd---~~--~i~~~~~v~lrsfsT~~hkv~~~v~yk~~~ 203 (203)
T 4aez_B 147 EQCTFNV-LVYADKD---SEVPTDWVDSD---PR--ILRDAEQVQLRSFSTSMHKIDCQVAYRVNP 203 (203)
T ss_dssp SCEEEEE-EEEEETT---CCCCTTEEECC---CC--CCSSCEEEEEEEEECSSEEEEEEEEECC--
T ss_pred CCceEEE-EEEeCCC---CCCCCccccCC---Ce--eccCccEEeeeeEecCCeeeeeEEEecCCC
Confidence 9998888 5677662 23566777663 43 457899999999999999999999875543
No 3
>3abd_A Mitotic spindle assembly checkpoint protein MAD2B; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_C*
Probab=99.89 E-value=3.5e-23 Score=204.89 Aligned_cols=187 Identities=13% Similarity=0.208 Sum_probs=136.1
Q ss_pred hhhhhccHH-HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccchhhh------HhhcCCCChhHHHHHHHHhcccce
Q 042785 6 LKEAEITEQ-DSLLLTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEMK------IKKLMPMDAESRVYDALQKKYLKT 78 (604)
Q Consensus 6 ~~~~~ITeq-QSl~lVk~LL~vAISsIlYLRGLFPEe~F~dr~v~gLsLK------IKkLlp~d~EsgVfDALeKgYLK~ 78 (604)
+..+.++.. +++.+|.+||.+||++|||+|||||++.|..+..+|+.+. ++..+. +...++.+||.+|.|++
T Consensus 20 ~~~~~~~~~~~~a~iv~eFlevainsILY~RgVYP~e~F~~~rky~l~v~~sr~p~l~~YI~-~~l~~v~~~L~~g~v~k 98 (227)
T 3abd_A 20 LTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQ-DTLHCVKPLLEKNDVEK 98 (227)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEETTEEEEEECCHHHHHHHH-HHHHHHHHHHHTTCEEE
T ss_pred hccCCCchhHHHHHHHHHHHHHHHHHHHhccccCChHHhhHHHhcCCceEEecCHHHHHHHH-HHHHHHHHHHHhCceeE
Confidence 444555554 6889999999999999999999999999999999998762 222221 12368999999999999
Q ss_pred EEEEEEecCCCceeEEEEEEEEeecCCCCceeEEEeecCCcccCcccccccccccCHHHHHHHHHHHHHHHHHHhhhcCC
Q 042785 79 LLFCVCEAVEGPMIEEYAFSFSYSDSDSQEISMNINRTGNKKKGGTFKCNTTTEITTTQMRSSACKMVRTLVQLMRTLDR 158 (604)
Q Consensus 79 LvLvIy~~~ddpVIEsYtFsFsYs~~gg~eVsm~l~stGnkk~~~t~~~~~~s~~Tl~qIRkqI~~LIRqLi~Ltq~L~p 158 (604)
|+++|++.++ +++|+|.|+|.+..... . ....+..+++++++++||+|++++++|++
T Consensus 99 lvlvI~~~~~-e~lER~~Fdi~~~~~~~----------~------------~~~~~~~eie~eira~l~qi~~s~~~Lp~ 155 (227)
T 3abd_A 99 VVVVILDKEH-RPVEKFVFEITQPPLLS----------I------------SSDSLLSHVEQLLAAFILKISVCDAVLDH 155 (227)
T ss_dssp EEEEEECTTS-CEEEEEEEEEECCC----------------------------CCHHHHHHHHHHHHHHHHHTGGGTSCC
T ss_pred EEEEEEcCCC-cEEEEEEEEeeccCccc----------c------------cCcccHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999998655 89999999999764210 0 01235678999999999999999999999
Q ss_pred CCcceeEEEEEEEecCCCCCC------CCCCCcccCCccCCCCCCCCCCceeEeeeecCCCeeEEEEE
Q 042785 159 MPEERTILMKLFYYDDVTPVD------YEPPFFRCCSEEEAHNPWTKNPLKMEVGNVNSKHFVLALKV 220 (604)
Q Consensus 159 LPdeR~lsmKLlYyDDvTP~D------YEPPGFk~asd~e~~y~~~knp~kv~LGs~sTghH~V~LkV 220 (604)
||+++.+.+ +.|+++.++.. |++.-|.+++... .+..++..+.|++|+||.|.|.+-|
T Consensus 156 L~~~ctF~i-lv~t~~~~~~~~~~~~~~~~~pWi~ad~~~---~~~~~~~~vplrs~~t~~~~~~~~V 219 (227)
T 3abd_A 156 NPPGCTFTV-LVHTREAATRNMEKIQVIKDFPWILADEQD---VHMHDPRLIPLKTMTSDILKMQLYV 219 (227)
T ss_dssp CCTTCEEEE-EEEEC--------------CCCEEECCHHH---HCCSSEEEEEEEEEECSSCEEEEEE
T ss_pred CCCCcEEEE-EEEecCccccccccccCcCCCCceECCccc---cccCCceEEeeEEEecCcEEEEEEE
Confidence 999998888 45776533311 2333376664321 2346788999999999999999988
No 4
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=95.16 E-value=0.023 Score=50.70 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=57.7
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhh--hhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHH--HH
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKE--ANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKL--ME 455 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 455 (604)
....++..|.+|++. -..+|+..|...|..+ .+.++|+.++++|++.|||+-...+| .++++-.+|+... .+
T Consensus 7 lt~~e~~vL~~L~~~--~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~~r--~~~~~~~lt~~~~~~~~ 82 (138)
T 2g9w_A 7 LGDLERAVMDHLWSR--TEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDR--AHRYAPVHGRDELVAGL 82 (138)
T ss_dssp CCHHHHHHHHHHHTC--SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC-----CCEEEESSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc--CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEecCC--eEEEEeCCCHHHHHHHH
Confidence 445688899999974 1468999999998643 78999999999999999999887655 5667767777654 44
Q ss_pred HHHhhc
Q 042785 456 AKKALD 461 (604)
Q Consensus 456 ~~~~~~ 461 (604)
++.++.
T Consensus 83 ~~~~~~ 88 (138)
T 2g9w_A 83 MVDALA 88 (138)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 455443
No 5
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=94.76 E-value=0.038 Score=47.50 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=56.4
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhh--hhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHH--HH
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDK--EANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKL--ME 455 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 455 (604)
....++..|.+|++. .-+|+..|...|.- ..+.++|+.++++|++.|||+-...+| .++++..+|+... .+
T Consensus 8 Lt~~q~~vL~~L~~~---~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r--~~~~~~~~~~~~~~~~~ 82 (126)
T 1sd4_A 8 ISMAEWDVMNIIWDK---KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSEN--IYFYSSNIKEDDIKMKT 82 (126)
T ss_dssp CCHHHHHHHHHHHHS---SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETT--EEEEEECSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc---CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeCCC--eEEEEEecCHHHHHHHH
Confidence 456688999999984 34799999998863 257999999999999999999887755 4466655665542 33
Q ss_pred HHHhh
Q 042785 456 AKKAL 460 (604)
Q Consensus 456 ~~~~~ 460 (604)
+++++
T Consensus 83 ~~~~~ 87 (126)
T 1sd4_A 83 AKTFL 87 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 6
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=94.51 E-value=0.025 Score=47.41 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=48.5
Q ss_pred cchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc
Q 042785 382 LDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG 435 (604)
Q Consensus 382 ~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (604)
..|-+|-+|+-.++.....+++.||.+|. +--+-+..|||+|+++|+|-+..
T Consensus 7 ~~D~Ly~~A~~~V~~~~~aS~S~lQR~lr--IGYnRAArlid~lE~~GiVgp~~ 58 (73)
T 2ve8_A 7 EDDPLYDEAVRFVTESRRASISAVQRKLK--IGYNRAARMIEAMEMAGVVTPMN 58 (73)
T ss_dssp CCCTTHHHHHHHHHHHCCCCHHHHHHHHT--CCHHHHHHHHHHHHHTTSBCCCC
T ss_pred cccHHHHHHHHHHHhcCCccHHHHHHHHc--cChHHHHHHHHHHHHCCcCCccc
Confidence 34889999999999999999999999999 99999999999999999997754
No 7
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=94.01 E-value=0.061 Score=46.02 Aligned_cols=68 Identities=15% Similarity=0.307 Sum_probs=55.0
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhh--hhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHH
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKE--ANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKL 453 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (604)
....++..|..|++. ..+|+..|...|.-+ .+.++|+.++++|++.|||+...+ |+|.++-.+|++--
T Consensus 8 lt~~~~~vL~~l~~~---~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~---~rr~~~~~lT~~g~ 77 (123)
T 1okr_A 8 ISSAEWEVMNIIWMK---KYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD---NKIFQYYSLVEESD 77 (123)
T ss_dssp CCHHHHHHHHHHHHH---SSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE---TTEEEEEESSCHHH
T ss_pred CCHHHHHHHHHHHhC---CCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec---CCeEEEEEecCHHH
Confidence 445678888888872 468899999888755 779999999999999999998765 78888877887643
No 8
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=92.82 E-value=0.091 Score=42.56 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=44.7
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhh--hhHHHHHHHHHHHHHhcccccccc
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKE--ANQSTVRKLIDKMIREGYVEAKGS 436 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 436 (604)
....++..|++|+. -..+|+..|...|..+ .++++|+.++++|++.|||+....
T Consensus 7 lt~~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~ 62 (82)
T 1p6r_A 7 ISDAELEVMKVIWK---HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKE 62 (82)
T ss_dssp CCHHHHHHHHHHHT---SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHc---CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEec
Confidence 44557889999987 3578999999988643 689999999999999999997654
No 9
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=92.69 E-value=0.1 Score=50.22 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=52.7
Q ss_pred HHHHHHhhhhc-cceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhc
Q 042785 386 IYMKALYYALS-MNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALD 461 (604)
Q Consensus 386 ~y~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (604)
.|+||+|+... -..+++..|...|. .++.+|++++++|+++|||+-..++ . -.||++=...+.+++.
T Consensus 6 dYL~~I~~l~~~~~~~~~~~lA~~l~--vs~~tvs~~l~~Le~~GlV~r~~~~----~---i~LT~~G~~~~~~~~~ 73 (214)
T 3hrs_A 6 DYLKCLYELGTRHNKITNKEIAQLMQ--VSPPAVTEMMKKLLAEELLIKDKKA----G---YLLTDLGLKLVSDLYR 73 (214)
T ss_dssp HHHHHHHHTTSSCSCCCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEETTT----E---EEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHC--CChhHHHHHHHHHHHCCCEEEecCC----C---eEECHHHHHHHHHHHH
Confidence 58999999764 46799999999999 9999999999999999999876652 1 2467665555555444
No 10
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=92.23 E-value=0.18 Score=43.20 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=56.0
Q ss_pred CCCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHH
Q 042785 378 KSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAK 457 (604)
Q Consensus 378 ~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (604)
......++..+.+|++.= -+++..|...+. .++.+|++++++|++.|||+-..+.. ++|..+-.+|++-..-+.
T Consensus 30 ~~lt~~~~~iL~~l~~~~---~~~~~~la~~l~--~~~~tvs~~l~~L~~~gli~r~~~~~-d~R~~~~~lT~~G~~~~~ 103 (138)
T 1jgs_A 30 LDITAAQFKVLCSIRCAA---CITPVELKKVLS--VDLGALTRMLDRLVCKGWVERLPNPN-DKRGVLVKLTTGGAAICE 103 (138)
T ss_dssp TTSCHHHHHHHHHHHHHS---SBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECTT-CSSCEEEEECHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhcC---CCCHHHHHHHHC--CChHHHHHHHHHHHHCCCEEecCCcc-cCceeEeEEChhHHHHHH
Confidence 345667888899988743 368888888888 99999999999999999999765443 345555557776444444
Q ss_pred Hh
Q 042785 458 KA 459 (604)
Q Consensus 458 ~~ 459 (604)
++
T Consensus 104 ~~ 105 (138)
T 1jgs_A 104 QC 105 (138)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 11
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=92.21 E-value=0.19 Score=43.43 Aligned_cols=75 Identities=24% Similarity=0.232 Sum_probs=56.3
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+.+|+ -.-++++.|...|. .++.+|++++++|++.|||+-..+.. ++|..+-.+|++-...+.+
T Consensus 34 ~l~~~~~~iL~~l~----~~~~~~~ela~~l~--~s~~tvs~~l~~Le~~glv~r~~~~~-d~r~~~~~lT~~G~~~~~~ 106 (146)
T 2gxg_A 34 NLSYLDFLVLRATS----DGPKTMAYLANRYF--VTQSAITASVDKLEEMGLVVRVRDRE-DRRKILIEITEKGLETFNK 106 (146)
T ss_dssp TCCHHHHHHHHHHT----TSCBCHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEEECSS-CTTCEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh----cCCcCHHHHHHHhC--CCchhHHHHHHHHHHCCCEEeecCCC-CCceEEEEECHHHHHHHHH
Confidence 35667888888887 35689999999997 99999999999999999998765432 4455555678765554444
Q ss_pred hh
Q 042785 459 AL 460 (604)
Q Consensus 459 ~~ 460 (604)
+.
T Consensus 107 ~~ 108 (146)
T 2gxg_A 107 GI 108 (146)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 12
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=91.90 E-value=0.15 Score=41.88 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=46.3
Q ss_pred cceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccccc--ccccceeeehhhhHHHHHHHHHhhc
Q 042785 397 MNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGS--RRLGKRVIHSTLTKKKLMEAKKALD 461 (604)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (604)
-.-+++..|...|. ++.++|++++++|++.|||+.... .+.|++...-.++..-+.++...+.
T Consensus 34 ~~~~t~~ela~~l~--is~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~l~~~~~~~~~~~~~ 98 (109)
T 2d1h_A 34 EKPITSEELADIFK--LSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIRNDLL 98 (109)
T ss_dssp CSCEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeeecCHHHHHHHHHHHH
Confidence 35689999999998 999999999999999999987543 4557777666677766666665544
No 13
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=91.77 E-value=0.19 Score=43.59 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=56.9
Q ss_pred CCCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHH
Q 042785 378 KSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAK 457 (604)
Q Consensus 378 ~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (604)
......++..+..|++. .-+++..|...+. .+..+|++++++|++.|||+-..+.. .+|..+-.+|++=..-+.
T Consensus 33 ~~lt~~~~~iL~~l~~~---~~~t~~eLa~~l~--~~~~~vs~~l~~L~~~Glv~r~~~~~-D~R~~~~~LT~~G~~~~~ 106 (143)
T 3oop_A 33 YDVTPEQWSVLEGIEAN---EPISQKEIALWTK--KDTPTVNRIVDVLLRKELIVREISTE-DRRISLLSLTDKGRKETT 106 (143)
T ss_dssp SSSCHHHHHHHHHHHHH---SSEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEC-----CCSCEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc---CCcCHHHHHHHHC--CCHhhHHHHHHHHHHCCCeeccCCCc-cCceeeeeECHHHHHHHH
Confidence 34567788888888875 6789999999997 99999999999999999998765432 345556667876555444
Q ss_pred Hhh
Q 042785 458 KAL 460 (604)
Q Consensus 458 ~~~ 460 (604)
++.
T Consensus 107 ~~~ 109 (143)
T 3oop_A 107 ELR 109 (143)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 14
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=91.56 E-value=0.17 Score=44.63 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=55.1
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+..|++. .-+++..|...+. .+..+|++++++|++.|||+-..+.. .+|+.+-.||++-..-+.+
T Consensus 38 ~lt~~q~~iL~~l~~~---~~~~~~eLa~~l~--~~~~~vs~~l~~L~~~Glv~r~~~~~-D~R~~~~~LT~~G~~~~~~ 111 (149)
T 4hbl_A 38 GITYSQYLVMLTLWEE---NPQTLNSIGRHLD--LSSNTLTPMLKRLEQSGWVKRERQQS-DKRQLIITLTDNGQQQQEA 111 (149)
T ss_dssp TCCHHHHHHHHHHHHS---SSEEHHHHHHHHT--CCHHHHHHHHHHHHHHTSEEC----------CEEEECSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHC---CCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEeeCCCCC-CcceeeeeECHHHHHHHHH
Confidence 3556788888888865 5679999999997 99999999999999999999765433 4556666788876665555
Q ss_pred hhc
Q 042785 459 ALD 461 (604)
Q Consensus 459 ~~~ 461 (604)
+..
T Consensus 112 ~~~ 114 (149)
T 4hbl_A 112 VFE 114 (149)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 15
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=91.49 E-value=0.26 Score=40.22 Aligned_cols=72 Identities=19% Similarity=0.233 Sum_probs=50.0
Q ss_pred HHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhc
Q 042785 387 YMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALD 461 (604)
Q Consensus 387 y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (604)
-++-|.+...-.-++++.|...|. +++.+|...+++|++.|||+...... ++|..+-.+|++-...+.+++.
T Consensus 18 ~~~iL~~L~~~~~~~~~ela~~l~--is~~tvs~~l~~L~~~gli~~~~~~~-~~r~~~~~lt~~g~~~~~~~~~ 89 (100)
T 1ub9_A 18 RLGIMIFLLPRRKAPFSQIQKVLD--LTPGNLDSHIRVLERNGLVKTYKVIA-DRPRTVVEITDFGMEEAKRFLS 89 (100)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEEEECS-SSCEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEEecCC-CcceEEEEECHHHHHHHHHHHH
Confidence 334444333335689999999997 99999999999999999998544221 3345555678876655555544
No 16
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=91.49 E-value=0.26 Score=42.44 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=55.5
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+.+||+ .-.-+++..|...|. .++.+|++++++|++.|||+-..+.. ++|..+-.+|++-..-+.+
T Consensus 34 ~l~~~~~~iL~~l~~--~~~~~t~~~la~~l~--~s~~~vs~~l~~L~~~glv~r~~~~~-d~R~~~~~lT~~G~~~~~~ 108 (146)
T 2fbh_A 34 GLSQARWLVLLHLAR--HRDSPTQRELAQSVG--VEGPTLARLLDGLESQGLVRRLAVAE-DRRAKHIVLTPKADVLIAD 108 (146)
T ss_dssp CCTTTHHHHHHHHHH--CSSCCBHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEECCBT-TBCSCEEEECTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCCHHHHHHHhC--CChhhHHHHHHHHHHCCCeeecCCCc-ccCeeeeEECHhHHHHHHH
Confidence 356678888888854 234689999999997 99999999999999999998765432 4555555677654444333
No 17
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=91.21 E-value=0.22 Score=44.03 Aligned_cols=74 Identities=7% Similarity=0.132 Sum_probs=51.4
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHh
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKA 459 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (604)
....++..+.+|++. ..+++..|...|. +++.+|+++|++|++.|||+-..+.. ++|..+-.+|++-..-+.++
T Consensus 47 lt~~~~~iL~~l~~~---~~~t~~ela~~l~--is~~tvs~~l~~Le~~glv~r~~~~~-d~R~~~~~lT~~G~~~~~~~ 120 (162)
T 2fa5_A 47 MAIPEWRVITILALY---PGSSASEVSDRTA--MDKVAVSRAVARLLERGFIRRETHGD-DRRRSMLALSPAGRQVYETV 120 (162)
T ss_dssp CCHHHHHHHHHHHHS---TTCCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEC----------CCCEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhC---CCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEeeecCCC-CCCeeEEEECHHHHHHHHHH
Confidence 556688888888862 4678899999998 99999999999999999998765432 45666666787654444433
No 18
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=91.09 E-value=0.14 Score=42.40 Aligned_cols=69 Identities=25% Similarity=0.216 Sum_probs=48.9
Q ss_pred HHHHHhhhhccc-eehhhhhhhhhhhhhhHHH-HHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhh
Q 042785 387 YMKALYYALSMN-YVTIAKLQKKLDKEANQST-VRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKAL 460 (604)
Q Consensus 387 y~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (604)
++..|++...-. -+++..|...|. .++.+ |.+++++|++.|||+.. ..++|..+-.||++=..-++++.
T Consensus 17 ~l~~L~~l~~~~~~~t~~eLa~~l~--is~~t~vs~~l~~Le~~Glv~~~---~~drR~~~~~LT~~G~~~~~~~~ 87 (95)
T 2pg4_A 17 ILPTLLEFEKKGYEPSLAEIVKASG--VSEKTFFMGLKDRLIRAGLVKEE---TLSYRVKTLKLTEKGRRLAECLE 87 (95)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHC--CCHHHHHTTHHHHHHHTTSEEEE---EEETTEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHC--CCchHHHHHHHHHHHHCCCeecC---CCCCCeEEEEECHhHHHHHHHHH
Confidence 444555444444 489999999997 89999 99999999999999922 23445555568877655555443
No 19
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=91.08 E-value=0.34 Score=42.14 Aligned_cols=80 Identities=13% Similarity=0.169 Sum_probs=60.0
Q ss_pred CCCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHH
Q 042785 378 KSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAK 457 (604)
Q Consensus 378 ~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (604)
-.....++..+..|++. +-.-+++..|...|. .+..+|+.++++|++.|||+-..+.. .+|..+-.||++-..-++
T Consensus 33 ~~lt~~q~~vL~~l~~~-~~~~~t~~eLa~~l~--~~~~tvs~~l~~Le~~Glv~r~~~~~-D~R~~~i~LT~~G~~~~~ 108 (127)
T 2frh_A 33 FSISFEEFAVLTYISEN-KEKEYYLKDIINHLN--YKQPQVVKAVKILSQEDYFDKKRNEH-DERTVLILVNAQQRKKIE 108 (127)
T ss_dssp TCCCHHHHHHHHHHHHT-CCSEEEHHHHHHHSS--SHHHHHHHHHHHHHHTTSSCCBCCSS-SSCCCEEECCSHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhc-cCCCcCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEecCCCC-CCCeeEEEECHHHHHHHH
Confidence 34667788899998872 224689999999999 89999999999999999999765543 345555568887655555
Q ss_pred Hhhc
Q 042785 458 KALD 461 (604)
Q Consensus 458 ~~~~ 461 (604)
++..
T Consensus 109 ~~~~ 112 (127)
T 2frh_A 109 SLLS 112 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 20
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=91.05 E-value=0.21 Score=42.72 Aligned_cols=74 Identities=8% Similarity=0.112 Sum_probs=55.3
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+..|+.. .-+++..|...|. .++.+|++++++|++.|||+-..+.. ++|..+-.+|++-..-+.+
T Consensus 26 ~l~~~~~~iL~~l~~~---~~~~~~ela~~l~--~s~~tvs~~l~~L~~~glv~~~~~~~-d~R~~~~~lT~~G~~~~~~ 99 (138)
T 3bpv_A 26 NLTDAQVACLLRIHRE---PGIKQDELATFFH--VDKGTIARTLRRLEESGFIEREQDPE-NRRRYILEVTRRGEEIIPL 99 (138)
T ss_dssp TCCHHHHHHHHHHHHS---TTCBHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEEETT-EEEEEEEEECHHHHHTHHH
T ss_pred CCCHHHHHHHHHHHHc---CCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEeecCCC-CceeEEeeECHhHHHHHHH
Confidence 3556688888888764 4578999999997 99999999999999999998754432 4455555678765443333
No 21
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=90.71 E-value=0.32 Score=41.64 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=54.3
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
....++..+.+|+.. .-+++..|...|. .++.+|++++++|++.|||+-..+.. .+|..+-.+|++-..-+.+
T Consensus 34 lt~~~~~iL~~l~~~---~~~t~~ela~~l~--~s~~~vs~~l~~Le~~glv~r~~~~~-d~R~~~~~lT~~G~~~~~~ 106 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQ---GEMESYQLANQAC--ILRPSMTGVLARLERDGIVRRWKAPK-DQRRVYVNLTEKGQQCFVS 106 (142)
T ss_dssp CCHHHHHHHHHHHHH---CSEEHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEEEETT-EEEEEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc---CCCCHHHHHHHHC--CCHhHHHHHHHHHHHCCCEEeecCCC-CCCeeEEEECHHHHHHHHH
Confidence 456688888888774 3489999999997 89999999999999999998764432 3455555677765444433
No 22
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=90.59 E-value=0.24 Score=42.78 Aligned_cols=77 Identities=17% Similarity=0.206 Sum_probs=58.7
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHh
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKA 459 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (604)
....++..+..|+.. .-+++..|...|. .++.+|++++++|++.|||+-..+.. ++|..+-.+|++-...+.++
T Consensus 35 l~~~~~~iL~~l~~~---~~~~~~ela~~l~--~~~~tvs~~l~~L~~~gli~r~~~~~-d~R~~~~~lT~~G~~~~~~~ 108 (142)
T 2bv6_A 35 LTYPQFLVLTILWDE---SPVNVKKVVTELA--LDTGTVSPLLKRMEQVDLIKRERSEV-DQREVFIHLTDKSETIRPEL 108 (142)
T ss_dssp CCHHHHHHHHHHHHS---SEEEHHHHHHHTT--CCTTTHHHHHHHHHHTTSEEEEECSS-STTCEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc---CCcCHHHHHHHHC--CChhhHHHHHHHHHHCCCEEeecCCC-CcceEEEEEChHHHHHHHHH
Confidence 455677788887753 4589999999997 89999999999999999998765432 45666667888776666665
Q ss_pred hcc
Q 042785 460 LDI 462 (604)
Q Consensus 460 ~~~ 462 (604)
...
T Consensus 109 ~~~ 111 (142)
T 2bv6_A 109 SNA 111 (142)
T ss_dssp TTH
T ss_pred HHH
Confidence 543
No 23
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=90.55 E-value=0.23 Score=42.62 Aligned_cols=73 Identities=19% Similarity=0.081 Sum_probs=54.3
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLME 455 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (604)
.....++..+.+|+.. |-.-+++..|...|. .++.+|++++++|++.|||+-..+.. ++|..+-.+|++-..-
T Consensus 31 ~lt~~~~~iL~~l~~~-~~~~~~~~ela~~l~--~~~~tvs~~l~~Le~~Gli~r~~~~~-d~R~~~i~lT~~G~~~ 103 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRN-KNKEVLQRDLESEFS--IKSSTATVLLQRMEIKKLLYRKVSGK-DSRQKCLKLTKKANKL 103 (141)
T ss_dssp TCCHHHHHHHHHHHHT-TTSCCBHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECSS-CTTSEEEEECHHHHTT
T ss_pred CCCHHHHHHHHHHHHC-CCCCcCHHHHHHHHC--CCcchHHHHHHHHHHCCCEEeeCCCc-CCCeeeeEECHHHHHH
Confidence 3566788888888874 322579999999997 89999999999999999998765432 3455555577765433
No 24
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=90.53 E-value=0.36 Score=41.65 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=55.5
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..|..|+.. .-++++.|...|. .++.+|++++++|++.|||+-..+.. ++|..+-.+|++-..-+.+
T Consensus 26 ~lt~~~~~iL~~l~~~---~~~t~~~la~~l~--~s~~~vs~~l~~Le~~gli~r~~~~~-d~R~~~~~lT~~G~~~~~~ 99 (144)
T 1lj9_A 26 SLTRGQYLYLVRVCEN---PGIIQEKIAELIK--VDRTTAARAIKRLEEQGFIYRQEDAS-NKKIKRIYATEKGKNVYPI 99 (144)
T ss_dssp TCTTTHHHHHHHHHHS---TTEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECSS-CTTCEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHC---cCcCHHHHHHHHC--CCHhHHHHHHHHHHHCCCEEeecCCC-CCceeeeEEChhHHHHHHH
Confidence 3566788888888864 3578999999997 99999999999999999998765432 3445555677765444443
Q ss_pred h
Q 042785 459 A 459 (604)
Q Consensus 459 ~ 459 (604)
+
T Consensus 100 ~ 100 (144)
T 1lj9_A 100 I 100 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 25
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=90.44 E-value=0.3 Score=42.57 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=54.0
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAK 457 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (604)
.....++..+.+|+.. .-+++..|...|. .++.+|++++++|++.|||+-..+.. ++|..+-.+|++-..-+.
T Consensus 37 ~lt~~~~~iL~~l~~~---~~~t~~ela~~l~--~~~~~vs~~l~~Le~~Glv~r~~~~~-d~R~~~~~lT~~G~~~~~ 109 (152)
T 3bj6_A 37 GVTVGQRAILEGLSLT---PGATAPQLGAALQ--MKRQYISRILQEVQRAGLIERRTNPE-HARSHRYWLTPRGEAIIT 109 (152)
T ss_dssp TCCHHHHHHHHHHHHS---TTEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEECCSS-STTSCEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC---CCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCeeecCCcc-cccceeeEEChhhHHHHH
Confidence 3556688888888763 3578999999997 89999999999999999999765432 345555557775443333
No 26
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=90.42 E-value=0.17 Score=42.96 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=47.4
Q ss_pred HHHHHHhhhhc-cceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccccc--ccccceeeehhhhHHHHHH
Q 042785 386 IYMKALYYALS-MNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGS--RRLGKRVIHSTLTKKKLME 455 (604)
Q Consensus 386 ~y~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 455 (604)
.+.+-|...++ =..++++.|...|. +++++||+.+.+|+.+|||+.... ++.|..|..-.++...+.+
T Consensus 19 ~~l~Il~~l~~~g~~~s~~eLa~~lg--vs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~~~~~~~~~i~~ 89 (110)
T 1q1h_A 19 DVIDVLRILLDKGTEMTDEEIANQLN--IKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWKPNIDQINE 89 (110)
T ss_dssp TTHHHHHHHHHHCSCBCHHHHHHTTT--SCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEEEEECTHHHHC-
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEEecccCCCceEEEEeecCHHHHHH
Confidence 34455555543 33689999999999 999999999999999999987522 4556666533455555443
No 27
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=90.14 E-value=0.38 Score=41.34 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=56.2
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+..|++. |-.-+++..|...+. .+..+|++++++|++.|||+-..+.. .+|..+-.+|++=..-+.+
T Consensus 28 ~lt~~~~~vL~~l~~~-~~~~~t~~ela~~l~--~~~~tvs~~l~~Le~~Gli~r~~~~~-D~R~~~~~LT~~G~~~~~~ 103 (139)
T 3eco_A 28 DITNEQGHTLGYLYAH-QQDGLTQNDIAKALQ--RTGPTVSNLLRNLERKKLIYRYVDAQ-DTRRKNIGLTTSGIKLVEA 103 (139)
T ss_dssp TCCHHHHHHHHHHHHS-TTTCEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECCC---CCEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc-CCCCcCHHHHHHHhC--CCcccHHHHHHHHHHCCCEeecCCCC-CCCeeeeEECHHHHHHHHH
Confidence 3556788888888763 223678999999998 99999999999999999998765433 4556666677765444444
Q ss_pred hh
Q 042785 459 AL 460 (604)
Q Consensus 459 ~~ 460 (604)
+.
T Consensus 104 ~~ 105 (139)
T 3eco_A 104 FT 105 (139)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 28
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=90.08 E-value=0.4 Score=42.53 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=56.2
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+..|++. .-+++..|...+. .+..+|++++++|++.|||+-..+.. .+|+.+-.||++-..-+.+
T Consensus 47 ~lt~~q~~vL~~l~~~---~~~t~~eLa~~l~--~~~~tvs~~l~~Le~~Glv~r~~~~~-DrR~~~l~LT~~G~~~~~~ 120 (159)
T 3s2w_A 47 GIGSGQFPFLMRLYRE---DGINQESLSDYLK--IDKGTTARAIQKLVDEGYVFRQRDEK-DRRSYRVFLTEKGKKLEPD 120 (159)
T ss_dssp TCCTTTHHHHHHHHHS---CSEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECC----CCEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHC---CCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEecCCC-CCCeeEEEECHHHHHHHHH
Confidence 3556688888888874 4579999999997 99999999999999999998765433 3455666688765554444
Q ss_pred hh
Q 042785 459 AL 460 (604)
Q Consensus 459 ~~ 460 (604)
+.
T Consensus 121 ~~ 122 (159)
T 3s2w_A 121 MK 122 (159)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 29
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=90.06 E-value=0.33 Score=42.94 Aligned_cols=73 Identities=16% Similarity=0.098 Sum_probs=53.6
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
....++..+..|++. .-+++..|...|. .++.+|+++|++|++.|||+-..+.. ++|..+-.+|++-..-+.+
T Consensus 50 lt~~~~~iL~~l~~~---~~~t~~ela~~l~--is~~tvs~~l~~Le~~Gli~r~~~~~-d~R~~~~~lT~~G~~~~~~ 122 (162)
T 3cjn_A 50 LSTAKMRALAILSAK---DGLPIGTLGIFAV--VEQSTLSRALDGLQADGLVRREVDSD-DQRSSRVYLTPAGRAVYDR 122 (162)
T ss_dssp CCHHHHHHHHHHHHS---CSEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEEC---CCSSEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHC---CCCCHHHHHHHHC--CChhHHHHHHHHHHHCCCEEecCCCC-CCCeeEEEECHHHHHHHHH
Confidence 455678888888863 3579999999997 99999999999999999998754322 4555566677754433333
No 30
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=90.05 E-value=0.31 Score=42.26 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=57.4
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHh
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKA 459 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (604)
....++..+..|++.=+ ++..|...+. .++.+|++++++|++.|||+-..+.. .+|.++-.+|++-..-+.++
T Consensus 35 lt~~~~~iL~~l~~~~~----~~~~la~~l~--~~~~tvs~~l~~Le~~Glv~r~~~~~-D~R~~~~~LT~~G~~~~~~~ 107 (144)
T 3f3x_A 35 LSYLDFSILKATSEEPR----SMVYLANRYF--VTQSAITAAVDKLEAKGLVRRIRDSK-DRRIVIVEITPKGRQVLLEA 107 (144)
T ss_dssp CCHHHHHHHHHHHHSCE----EHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEEETT-EEEEEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCC----CHHHHHHHHC--CChhHHHHHHHHHHHCCCEEeccCCC-CCceEEEEECHHHHHHHHHH
Confidence 55678888888877422 9999999998 99999999999999999999765443 56677777887655555444
Q ss_pred h
Q 042785 460 L 460 (604)
Q Consensus 460 ~ 460 (604)
.
T Consensus 108 ~ 108 (144)
T 3f3x_A 108 N 108 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 31
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=89.95 E-value=0.29 Score=47.20 Aligned_cols=54 Identities=24% Similarity=0.444 Sum_probs=44.9
Q ss_pred CCcchhHHHHHHhhhhccceehh--hhhhhhhhhhhhHHHHHHHHHHHHHhcccccccc
Q 042785 380 PQLDDQIYMKALYYALSMNYVTI--AKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGS 436 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (604)
.......|+++||+.-. .-++. ..|...|. .+..+|++++++|++.|||+-..+
T Consensus 4 lt~~~e~~L~~L~~l~~-~~~~~~~~~La~~l~--vs~~tvs~~l~~Le~~GlV~r~~~ 59 (230)
T 1fx7_A 4 LVDTTEMYLRTIYDLEE-EGVTPLRARIAERLD--QSGPTVSQTVSRMERDGLLRVAGD 59 (230)
T ss_dssp TSSHHHHHHHHHHHHHH-HTSCCCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CCHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEeCC
Confidence 34557889999998654 34556 89999997 899999999999999999998766
No 32
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=89.93 E-value=0.38 Score=41.46 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=54.8
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHh
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKA 459 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (604)
....++..|.+|+.. .-+++..|...|. .++.+|+++|++|++.|||+-..+.. ++|..+-.+|++-...+.++
T Consensus 31 l~~~~~~iL~~l~~~---~~~~~~~la~~l~--~s~~tvs~~l~~L~~~glv~r~~~~~-d~r~~~~~lT~~G~~~~~~~ 104 (145)
T 2a61_A 31 ITPAQFDILQKIYFE---GPKRPGELSVLLG--VAKSTVTGLVKRLEADGYLTRTPDPA-DRRAYFLVITRKGEEVIEKV 104 (145)
T ss_dssp CCHHHHHHHHHHHHH---CCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEEETT-EEEEEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc---CCCCHHHHHHHHC--CCchhHHHHHHHHHHCCCeeecCCCC-CCceEEEEECHHHHHHHHHH
Confidence 456678888888763 4578999999997 89999999999999999998764322 45556666777654444433
No 33
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=89.92 E-value=0.27 Score=43.12 Aligned_cols=50 Identities=18% Similarity=0.486 Sum_probs=43.1
Q ss_pred hhHHHHHHhhhhc-cceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc
Q 042785 384 DQIYMKALYYALS-MNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG 435 (604)
Q Consensus 384 ~~~y~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (604)
..-|+++||..+. -..+++..|...|. +++.+|++++++|++.|||+-..
T Consensus 6 ~~~~L~~i~~l~~~~~~~~~~ela~~l~--vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 6 MEMYIEQIYMLIEEKGYARVSDIAEALA--VHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHhC--CCHHHHHHHHHHHHHCCCEEEee
Confidence 4568999998763 35689999999998 99999999999999999998653
No 34
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=89.90 E-value=0.34 Score=42.00 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=49.9
Q ss_pred CCCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHH
Q 042785 378 KSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAK 457 (604)
Q Consensus 378 ~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (604)
......++..+..|++. .-+++..|...|. .+..+|++++++|++.|||+-..+.. .+|+++-.||++=..-+.
T Consensus 33 ~~lt~~~~~vL~~l~~~---~~~t~~eLa~~l~--~~~~tvs~~l~~L~~~Glv~r~~~~~-DrR~~~~~LT~~G~~~~~ 106 (142)
T 3ech_A 33 LDLTPPDVHVLKLIDEQ---RGLNLQDLGRQMC--RDKALITRKIRELEGRNLVRRERNPS-DQRSFQLFLTDEGLAIHL 106 (142)
T ss_dssp CCCCHHHHHHHHHHHHT---TTCCHHHHHHHHC-----CHHHHHHHHHHHTTSEEC-----------CCEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhC---CCcCHHHHHHHhC--CCHHHHHHHHHHHHHCCCEeeccCCC-CCCeeeeEECHHHHHHHH
Confidence 45667788888888874 3478999999997 99999999999999999998765432 345666678876544444
Q ss_pred Hh
Q 042785 458 KA 459 (604)
Q Consensus 458 ~~ 459 (604)
++
T Consensus 107 ~~ 108 (142)
T 3ech_A 107 HA 108 (142)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 35
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=89.78 E-value=0.4 Score=41.61 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=55.9
Q ss_pred CCCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHH
Q 042785 378 KSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAK 457 (604)
Q Consensus 378 ~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (604)
......++..+.+|++.=| +++..|...+. .+..+|+.++++|++.|||+-..+.. .+|.++-.||++-..-+.
T Consensus 27 ~~lt~~q~~iL~~l~~~~~---~t~~eLa~~l~--~~~~tvs~~l~~Le~~Glv~r~~~~~-D~R~~~~~LT~~G~~~~~ 100 (145)
T 3g3z_A 27 QDLNYNLFAVLYTLATEGS---RTQKHIGEKWS--LPKQTVSGVCKTLAGQGLIEWQEGEQ-DRRKRLLSLTETGKAYAA 100 (145)
T ss_dssp TTCCHHHHHHHHHHHHHCS---BCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEECCCSS-CGGGSCEEECHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCC---CCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEeeccCCC-CCceeeeeEChhHHHHHH
Confidence 3456678888888876544 89999999997 99999999999999999999654432 445555567776544444
Q ss_pred Hh
Q 042785 458 KA 459 (604)
Q Consensus 458 ~~ 459 (604)
++
T Consensus 101 ~~ 102 (145)
T 3g3z_A 101 PL 102 (145)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 36
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=89.73 E-value=0.41 Score=41.61 Aligned_cols=76 Identities=21% Similarity=0.255 Sum_probs=55.0
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+.+|+.. .-+++..|...|. .++.+|++++++|++.|||+-..+.. .+|..+-.+|++-..-+.+
T Consensus 39 ~l~~~~~~iL~~l~~~---~~~t~~ela~~l~--~~~~tvs~~l~~Le~~Glv~r~~~~~-d~R~~~~~lT~~G~~~~~~ 112 (150)
T 2rdp_A 39 PITPPQFVALQWLLEE---GDLTVGELSNKMY--LACSTTTDLVDRMERNGLVARVRDEH-DRRVVRIRLLEKGERIIEE 112 (150)
T ss_dssp SSCHHHHHHHHHHHHH---CSBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECCC----CEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCCCHHHHHHHHC--CCchhHHHHHHHHHHCCCeeecCCCC-CcceeEeEECHhHHHHHHH
Confidence 4556688888888874 3578999999997 99999999999999999998754432 3455555678765544444
Q ss_pred hh
Q 042785 459 AL 460 (604)
Q Consensus 459 ~~ 460 (604)
+.
T Consensus 113 ~~ 114 (150)
T 2rdp_A 113 VI 114 (150)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 37
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=89.49 E-value=0.46 Score=42.80 Aligned_cols=73 Identities=14% Similarity=0.207 Sum_probs=54.4
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAK 457 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (604)
.....++..+.+|+.. .-+++..|...|. +++.+|+++|++|++.|||+-..+.. ++|..+-.+|++-..-++
T Consensus 42 ~lt~~~~~iL~~L~~~---~~~t~~eLa~~l~--is~~tvs~~l~~Le~~GlV~r~~~~~-DrR~~~~~LT~~G~~~~~ 114 (168)
T 2nyx_A 42 NITIPQFRTLVILSNH---GPINLATLATLLG--VQPSATGRMVDRLVGAELIDRLPHPT-SRRELLAALTKRGRDVVR 114 (168)
T ss_dssp SCCHHHHHHHHHHHHH---CSEEHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEEECSS-CSSCEEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCCCHHHHHHHhC--CCHHHHHHHHHHHHHCCCEEeccCCC-CCCeeEEEECHHHHHHHH
Confidence 4556688888888763 3589999999997 99999999999999999998754432 345555567765444333
No 38
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=89.29 E-value=0.45 Score=41.58 Aligned_cols=73 Identities=12% Similarity=0.265 Sum_probs=53.6
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAK 457 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (604)
.....++..+.+|+.. .-++++.|...|. .++.+|+++|++|++.|||+-..+.. ++|...-.+|++-..-+.
T Consensus 34 ~l~~~~~~iL~~l~~~---~~~t~~ela~~l~--~s~~tvs~~l~~Le~~glv~r~~~~~-d~R~~~~~lT~~G~~~~~ 106 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKH---GSLKVSEIAERME--VKPSAVTLMADRLEQKNLIARTHNTK-DRRVIDLSLTDEGDIKFE 106 (155)
T ss_dssp TCCHHHHHHHHHHHHH---SEEEHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEEECSS-CTTSEEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEeecCCCC-CCceEEEEECHHHHHHHH
Confidence 3556688888888763 4589999999997 99999999999999999998765432 344444457765443333
No 39
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=89.22 E-value=0.46 Score=39.35 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=52.0
Q ss_pred CCcchhHHHHHHhhhhccceehhhhh----hhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHH
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKL----QKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLME 455 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (604)
....++.++.+|+.. .-++...| ...+. +++.+|+++|++|++.|||+...+. |..+-.||++=..-
T Consensus 6 lt~~q~~iL~~l~~~---~~~~~~el~~~la~~l~--is~~tvs~~l~~Le~~gli~r~~~~----r~~~~~LT~~G~~~ 76 (99)
T 1tbx_A 6 FFYPEAIVLAYLYDN---EGIATYDLYKKVNAEFP--MSTATFYDAKKFLIQEGFVKERQER----GEKRLYLTEKGKLF 76 (99)
T ss_dssp SBCHHHHHHHHHTTC---TTCBHHHHHHHHHTTSC--CCHHHHHHHHHHHHHTTSEEEEEET----TEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHc---CCcCHHHHHHHHHHHcC--CCHHHHHHHHHHHHHCCCEEEEecC----CceEEEECHHHHHH
Confidence 445678888888763 45678777 66777 8999999999999999999876665 22344477765444
Q ss_pred HHHhhc
Q 042785 456 AKKALD 461 (604)
Q Consensus 456 ~~~~~~ 461 (604)
+.++..
T Consensus 77 ~~~~~~ 82 (99)
T 1tbx_A 77 AISLKT 82 (99)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 40
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=89.22 E-value=0.44 Score=41.65 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=53.5
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccc--cccccccceeeehhhhHHHHHHHH
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEA--KGSRRLGKRVIHSTLTKKKLMEAK 457 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 457 (604)
....++..+.+|+.. .-+++..|...|. .++.+|++++++|++.|||+. ..+.. ++|..+-.+|++-..-+.
T Consensus 39 lt~~~~~iL~~l~~~---~~~t~~eLa~~l~--~~~~tvs~~l~~Le~~Glv~r~~~~~~~-d~R~~~~~LT~~G~~~~~ 112 (154)
T 2qww_A 39 LTIQQLAMINVIYST---PGISVADLTKRLI--ITGSSAAANVDGLISLGLVVKLNKTIPN-DSMDLTLKLSKKGEDLSK 112 (154)
T ss_dssp CCHHHHHHHHHHHHS---TTEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEESCC--CT-TCTTCEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHHHC---CCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEecCcCCCC-CCceeEeEECHHHHHHHH
Confidence 456688888888875 3389999999997 899999999999999999997 43332 334444456766544444
Q ss_pred Hhh
Q 042785 458 KAL 460 (604)
Q Consensus 458 ~~~ 460 (604)
++.
T Consensus 113 ~~~ 115 (154)
T 2qww_A 113 RST 115 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 41
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=89.13 E-value=0.51 Score=42.01 Aligned_cols=75 Identities=19% Similarity=0.145 Sum_probs=54.9
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHh
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKA 459 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (604)
....++..+..|++. .-+++..|...|. .+..+|++++++|++.|||+-..+.. .+|+.+-.||++-..-+.++
T Consensus 51 lt~~q~~vL~~l~~~---~~~t~~eLa~~l~--~~~~~vs~~l~~Le~~Glv~r~~~~~-DrR~~~~~LT~~G~~~~~~~ 124 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAY---GELTVGQLATLGV--MEQSTTSRTVDQLVDEGLAARSISDA-DQRKRTVVLTRKGKKKLAEI 124 (161)
T ss_dssp CCHHHHHHHHHHHHH---SEEEHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEECC----CCCSCEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhC---CCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEeeCCcc-cCCeeEeeECHHHHHHHHHH
Confidence 455678888888764 3689999999998 99999999999999999998765432 34556666777655444444
Q ss_pred h
Q 042785 460 L 460 (604)
Q Consensus 460 ~ 460 (604)
.
T Consensus 125 ~ 125 (161)
T 3e6m_A 125 S 125 (161)
T ss_dssp H
T ss_pred H
Confidence 3
No 42
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=89.08 E-value=0.52 Score=39.05 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=47.3
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhc
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALD 461 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (604)
.-++++.|...|. +++++|++.+.+|++.|+|+.. |-|+++..+ ++...+.++-+.|.
T Consensus 35 ~~~~~~ela~~l~--is~~tvs~~L~~L~~~Glv~~~---~~g~~~~y~-l~~~~~~~l~~~l~ 92 (98)
T 3jth_A 35 QELSVGELCAKLQ--LSQSALSQHLAWLRRDGLVTTR---KEAQTVYYT-LKSEEVKAMIKLLH 92 (98)
T ss_dssp SCEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEE---CCTTCCEEE-ECCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCeEEE---EeCCEEEEE-ECHHHHHHHHHHHH
Confidence 6789999999996 9999999999999999999864 557776654 67777777666554
No 43
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=89.05 E-value=0.36 Score=42.28 Aligned_cols=77 Identities=12% Similarity=0.040 Sum_probs=51.3
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+..|++.= .-+++..|...|. .+..+|++++++|++.|||+-..+.. .+|.++-.||++=..-+.+
T Consensus 36 glt~~q~~vL~~l~~~~--~~~t~~eLa~~l~--i~~~tvs~~l~~Le~~Glv~r~~~~~-D~R~~~~~LT~~G~~~~~~ 110 (150)
T 3fm5_A 36 GLRVRSYSVLVLACEQA--EGVNQRGVAATMG--LDPSQIVGLVDELEERGLVVRTLDPS-DRRNKLIAATEEGRRLRDD 110 (150)
T ss_dssp TCCHHHHHHHHHHHHST--TCCCSHHHHHHHT--CCHHHHHHHHHHHHTTTSEEC------------CEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCC--CCcCHHHHHHHHC--CCHhHHHHHHHHHHHCCCEEeeCCcc-ccchheeeECHHHHHHHHH
Confidence 35567888888887532 2379999999998 99999999999999999998765443 4566777788765555444
Q ss_pred hh
Q 042785 459 AL 460 (604)
Q Consensus 459 ~~ 460 (604)
+.
T Consensus 111 ~~ 112 (150)
T 3fm5_A 111 AK 112 (150)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 44
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=89.00 E-value=0.47 Score=39.45 Aligned_cols=72 Identities=24% Similarity=0.186 Sum_probs=49.8
Q ss_pred chhHHHHHHhhhhc-cceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhh
Q 042785 383 DDQIYMKALYYALS-MNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKAL 460 (604)
Q Consensus 383 ~~~~y~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (604)
..+.++.+|++.-+ -..+++..|...|. ++..+|.+++++|++.|||.....+| ..+-.||++=..-+.++.
T Consensus 13 ~~~~iL~~l~~~~~~~~~~t~~eLa~~l~--i~~~tvs~~l~~Le~~Glv~~~~d~R----~~~v~LT~~G~~~~~~~~ 85 (95)
T 2qvo_A 13 KALEILMTIYYESLGGNDVYIQYIASKVN--SPHSYVWLIIKKFEEAKMVECELEGR----TKIIRLTDKGQKIAQQIK 85 (95)
T ss_dssp HHHHHHHHHHHHHHTTCCEEHHHHHHHSS--SCHHHHHHHHHHHHHTTSEEEEEETT----EEEEEECHHHHHHHHHHH
T ss_pred hHHHHHHHHHHccCCCCCcCHHHHHHHHC--cCHHHHHHHHHHHHHCcCccCCCCCC----eEEEEEChhHHHHHHHHH
Confidence 35666777765432 22389999999998 99999999999999999994444443 333456766554444443
No 45
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=88.89 E-value=0.38 Score=41.64 Aligned_cols=56 Identities=11% Similarity=0.296 Sum_probs=45.7
Q ss_pred CCCCcchhHHHHHHhhhhccceehhhhhhhhhhhh--hhHHHHHHHHHHHHHhcccccccc
Q 042785 378 KSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKE--ANQSTVRKLIDKMIREGYVEAKGS 436 (604)
Q Consensus 378 ~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 436 (604)
......++.-|++|+. -.-+++..|...|..+ .+.++|..+|++|++.|||+....
T Consensus 31 ~~LT~~e~~VL~~L~~---~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~ 88 (99)
T 2k4b_A 31 FNVSNAELIVMRVIWS---LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKE 88 (99)
T ss_dssp CCCCCSCSHHHHHHHH---HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred CCCCHHHHHHHHHHHh---CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeC
Confidence 3456668889999986 2468999999998753 578999999999999999987644
No 46
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=88.88 E-value=0.82 Score=39.73 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=45.4
Q ss_pred CCcchhHHHHHHhhhhc-cceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc
Q 042785 380 PQLDDQIYMKALYYALS-MNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG 435 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (604)
.....+-|+++||+.+. -.-+++..|...|. +++++|++++++|+++|||+-..
T Consensus 11 lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~--is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 11 LSRREFSYLLTIKRYNDSGEGAKINRIAKDLK--IAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhC--CChHHHHHHHHHHHHCCCEEecC
Confidence 44557778899988653 35689999999998 99999999999999999998654
No 47
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=88.62 E-value=0.48 Score=42.18 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=57.0
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+..|++. .-+++..|...|. .+..+|++++++|++.|||+-..+.. .+|+.+-.||++-..-+.+
T Consensus 43 glt~~q~~iL~~l~~~---~~~t~~eLa~~l~--~~~~tvs~~l~~Le~~Glv~r~~~~~-DrR~~~l~LT~~G~~~~~~ 116 (162)
T 3k0l_A 43 EISLPQFTALSVLAAK---PNLSNAKLAERSF--IKPQSANKILQDLLANGWIEKAPDPT-HGRRILVTVTPSGLDKLNQ 116 (162)
T ss_dssp TCCHHHHHHHHHHHHC---TTCCHHHHHHHHT--SCGGGHHHHHHHHHHTTSEEEEECCS-SSCCEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHC---CCCCHHHHHHHHC--CCHHHHHHHHHHHHHCcCeEecCCCC-cCCeeEeEECHhHHHHHHH
Confidence 4566688888888764 3578999999997 99999999999999999999765433 4556666678765544444
Q ss_pred hh
Q 042785 459 AL 460 (604)
Q Consensus 459 ~~ 460 (604)
+.
T Consensus 117 ~~ 118 (162)
T 3k0l_A 117 CN 118 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 48
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=88.61 E-value=0.43 Score=41.32 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=51.4
Q ss_pred CcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhh
Q 042785 381 QLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKAL 460 (604)
Q Consensus 381 ~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (604)
...++..+.+|++. -.-+++..|...|. +++.+|+++|++|++.|||+-..+.. ++|..+-.+|++-..-+.++.
T Consensus 34 ~~~~~~iL~~l~~~--~~~~~~~~la~~l~--i~~~~vs~~l~~Le~~glv~r~~~~~-d~R~~~~~lT~~G~~~~~~~~ 108 (147)
T 2hr3_A 34 QFSQLVVLGAIDRL--GGDVTPSELAAAER--MRSSNLAALLRELERGGLIVRHADPQ-DGRRTRVSLSSEGRRNLYGNR 108 (147)
T ss_dssp HHHHHHHHHHHHHT--TSCBCHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEEC-------CCEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc--CCCCCHHHHHHHhC--CChhhHHHHHHHHHHCCCEeeCCCCC-CCCceeeEECHHHHHHHHHHH
Confidence 34467777777752 34689999999997 99999999999999999998765432 344445557776544444433
No 49
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=88.56 E-value=0.49 Score=43.82 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=57.0
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHh
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKA 459 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (604)
....++..+.+|++. |-.-+++..|...|. .++.+|+++|++|++.|||+-..+.. .+|+.+-.||++=..-+.++
T Consensus 39 lt~~q~~vL~~L~~~-~~~~~t~~eLa~~l~--is~~tvs~~l~~Le~~GlV~r~~~~~-DrR~~~l~LT~~G~~~~~~~ 114 (189)
T 3nqo_A 39 LTSRQYMTILSILHL-PEEETTLNNIARKMG--TSKQNINRLVANLEKNGYVDVIPSPH-DKRAINVKVTDLGKKVMVTC 114 (189)
T ss_dssp SCHHHHHHHHHHHHS-CGGGCCHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEEECSS-CSSCEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc-cCCCcCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEeccCCC-CCCeeEEEECHHHHHHHHHH
Confidence 677789999998862 345789999999998 99999999999999999999765433 34555556776544444433
No 50
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=88.55 E-value=0.38 Score=41.04 Aligned_cols=75 Identities=23% Similarity=0.265 Sum_probs=55.0
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+.+|+.. .-+++..|...+. .++.+|++++++|++.|||+-..+.. .+|..+-.+|++-..-+.+
T Consensus 30 ~l~~~~~~iL~~l~~~---~~~~~~ela~~l~--~~~~tvs~~l~~L~~~gli~r~~~~~-d~r~~~~~lT~~G~~~~~~ 103 (139)
T 3bja_A 30 DISYVQFGVIQVLAKS---GKVSMSKLIENMG--CVPSNMTTMIQRMKRDGYVMTEKNPN-DQRETLVYLTKKGEETKKQ 103 (139)
T ss_dssp TCCHHHHHHHHHHHHS---CSEEHHHHHHHCS--SCCTTHHHHHHHHHHTTSEEEEECSS-CTTCEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCcCHHHHHHHHC--CChhHHHHHHHHHHHCCCeeeccCCC-CCceeEEEECHHHHHHHHH
Confidence 3556788888888763 3478999999997 89999999999999999998754432 3444455577765544444
Q ss_pred h
Q 042785 459 A 459 (604)
Q Consensus 459 ~ 459 (604)
+
T Consensus 104 ~ 104 (139)
T 3bja_A 104 V 104 (139)
T ss_dssp H
T ss_pred H
Confidence 3
No 51
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=88.36 E-value=0.44 Score=41.20 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=51.3
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+..|+. -. ++++.|...|. .+.++|++++++|++.|||+-..+.. .+|+.+-.+|++-...+.+
T Consensus 35 ~lt~~~~~iL~~l~~---~~-~t~~eLa~~l~--~s~~tvs~~l~~L~~~Glv~r~~~~~-d~R~~~~~lT~~g~~~~~~ 107 (146)
T 3tgn_A 35 ALTNTQEHILMLLSE---ES-LTNSELARRLN--VSQAAVTKAIKSLVKEGMLETSKDSK-DARVIFYQLTDLARPIAEE 107 (146)
T ss_dssp CCCHHHHHHHHHHTT---CC-CCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEC-----------CCEECGGGHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CC-CCHHHHHHHHC--CCHHHHHHHHHHHHHCCCeEeccCCC-CCceeEEEECHhHHHHHHH
Confidence 455667777777765 34 99999999997 99999999999999999998655322 3455666678766655555
Q ss_pred hh
Q 042785 459 AL 460 (604)
Q Consensus 459 ~~ 460 (604)
+.
T Consensus 108 ~~ 109 (146)
T 3tgn_A 108 HH 109 (146)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 52
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=88.26 E-value=0.72 Score=41.03 Aligned_cols=47 Identities=17% Similarity=0.327 Sum_probs=37.9
Q ss_pred HHHHHhhhhc-cceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc
Q 042785 387 YMKALYYALS-MNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG 435 (604)
Q Consensus 387 y~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (604)
|++.|++.|- -..+++..|...|. +++++|++.|++|++.|||+...
T Consensus 41 ~~~~i~~~l~~~~~~~~~~la~~l~--vs~~tvs~~l~~Le~~Glv~r~~ 88 (155)
T 2h09_A 41 YVELISDLIREVGEARQVDMAARLG--VSQPTVAKMLKRLATMGLIEMIP 88 (155)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHT--SCHHHHHHHHHHHHHTTCEEEET
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhC--cCHHHHHHHHHHHHHCCCEEEec
Confidence 4555555543 25689999999998 99999999999999999998654
No 53
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=88.22 E-value=0.37 Score=41.89 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=54.4
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+..|++. .-+++..|...|. .+..+|++++++|++.|||+-..+.. .+|+++-.+|++-..-+.+
T Consensus 33 glt~~q~~vL~~l~~~---~~~t~~eLa~~l~--~~~~tvs~~l~~L~~~Glv~r~~~~~-D~R~~~~~LT~~G~~~~~~ 106 (140)
T 3hsr_A 33 DLTYTGYIVLMAIEND---EKLNIKKLGERVF--LDSGTLTPLLKKLEKKDYVVRTREEK-DERNLQISLTEQGKAIKSP 106 (140)
T ss_dssp TCCHHHHHHHHHSCTT---CEEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEC--------CEEEECHHHHHTHHH
T ss_pred CCCHHHHHHHHHHHHc---CCcCHHHHHHHHC--CChhhHHHHHHHHHHCCCeEecCCCC-CcceeeeeEChHHHHHHHH
Confidence 3556788888888863 4689999999997 99999999999999999999764432 4556666688775554444
Q ss_pred hh
Q 042785 459 AL 460 (604)
Q Consensus 459 ~~ 460 (604)
+.
T Consensus 107 ~~ 108 (140)
T 3hsr_A 107 LA 108 (140)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 54
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=88.13 E-value=0.36 Score=41.77 Aligned_cols=72 Identities=17% Similarity=0.283 Sum_probs=53.3
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEA 456 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (604)
.....++..+.+|+.. .-++++.|...+. +++.+|++++++|++.|||+-..+.. ++|..+-.||++-...+
T Consensus 37 ~l~~~~~~iL~~l~~~---~~~~~~~la~~l~--~~~~tvs~~l~~L~~~glv~r~~~~~-d~R~~~~~LT~~G~~~~ 108 (147)
T 1z91_A 37 NITYPQYLALLLLWEH---ETLTVKKMGEQLY--LDSGTLTPMLKRMEQQGLITRKRSEE-DERSVLISLTEDGALLK 108 (147)
T ss_dssp CCCHHHHHHHHHHHHH---SEEEHHHHHHTTT--CCHHHHHHHHHHHHHHTSEECCBCSS-CTTSBEEEECHHHHSGG
T ss_pred CCCHHHHHHHHHHHHC---CCCCHHHHHHHHC--CCcCcHHHHHHHHHHCCCEEeccCCC-CCCeeEEEECHhHHHHH
Confidence 4566788888888864 4689999999997 99999999999999999998765432 23444445676644333
No 55
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=88.10 E-value=0.48 Score=42.90 Aligned_cols=77 Identities=12% Similarity=0.117 Sum_probs=52.6
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+..|+..= .-+++..|...|. ++..+|+++|++|++.|||+-..+.. .+|+++-.||++-..-+.+
T Consensus 50 glt~~q~~vL~~L~~~~--~~~t~~eLa~~l~--i~~~tvs~~l~~Le~~GlV~r~~~~~-DrR~~~l~LT~~G~~~~~~ 124 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLP--PDQSQIQLAKAIG--IEQPSLVRTLDQLEDKGLISRQTCAS-DRRAKRIKLTEKAEPLIAE 124 (166)
T ss_dssp TCCHHHHHHHHHHHHSC--SSEEHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEC---------CEEEECGGGHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC--CCCCHHHHHHHHC--CCHhhHHHHHHHHHHCCCEEeeCCCC-CCCeeEEEECHHHHHHHHH
Confidence 45566777777777521 3489999999998 99999999999999999999765432 4556666677765544444
Q ss_pred hh
Q 042785 459 AL 460 (604)
Q Consensus 459 ~~ 460 (604)
+.
T Consensus 125 ~~ 126 (166)
T 3deu_A 125 ME 126 (166)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 56
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=87.79 E-value=0.52 Score=41.34 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=51.8
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHh
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKA 459 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (604)
....++..+.+|++. .-+++..|...|. +++.+|++++++|++.|||+-..+.. ++|.++-.+|++-..-+.++
T Consensus 41 lt~~~~~iL~~l~~~---~~~t~~ela~~l~--i~~~tvs~~l~~Le~~Glv~r~~~~~-d~R~~~~~lT~~G~~~~~~~ 114 (155)
T 3cdh_A 41 LRVPEWRVLACLVDN---DAMMITRLAKLSL--MEQSRMTRIVDQMDARGLVTRVADAK-DKRRVRVRLTDDGRALAESL 114 (155)
T ss_dssp CCHHHHHHHHHHSSC---SCBCHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEECC-------CCCEEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHC---CCcCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEeccCCC-cCCeeEeEECHHHHHHHHHH
Confidence 455677777777753 4588999999997 99999999999999999998755432 34445555777654444443
No 57
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=87.78 E-value=0.69 Score=40.72 Aligned_cols=74 Identities=14% Similarity=0.119 Sum_probs=52.9
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHh
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKA 459 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (604)
....++..|.+|+.. .-+++..|...|. +++.+|+++|++|++.|||+-..+.. ++|..+-.+|++-..-+.++
T Consensus 42 lt~~~~~iL~~l~~~---~~~t~~ela~~l~--is~~tvs~~l~~Le~~Gli~r~~~~~-d~R~~~~~lT~~G~~~~~~~ 115 (154)
T 2eth_A 42 MKTTELYAFLYVALF---GPKKMKEIAEFLS--TTKSNVTNVVDSLEKRGLVVREMDPV-DRRTYRVVLTEKGKEIFGEI 115 (154)
T ss_dssp SBHHHHHHHHHHHHH---CCBCHHHHHHHTT--SCHHHHHHHHHHHHHTTSEEEEECTT-TSSCEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc---CCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEeeCCCC-CcceeEEEECHHHHHHHHHH
Confidence 344577888888763 2478999999998 99999999999999999998765432 33444445676644444333
No 58
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=87.72 E-value=0.54 Score=40.11 Aligned_cols=75 Identities=9% Similarity=0.111 Sum_probs=55.1
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+.+|+.. .-+++..|...|. .++.+|++++++|++.|||+-..+. .++|..+-.+|++-..-+.+
T Consensus 35 ~l~~~~~~iL~~l~~~---~~~t~~ela~~l~--~~~~tvs~~l~~L~~~glv~r~~~~-~d~R~~~~~lT~~G~~~~~~ 108 (140)
T 2nnn_A 35 GLTPTQWAALVRLGET---GPCPQNQLGRLTA--MDAATIKGVVERLDKRGLIQRSADP-DDGRRLLVSLSPAGRAELEA 108 (140)
T ss_dssp CCCHHHHHHHHHHHHH---SSBCHHHHHHHTT--CCHHHHHHHHHHHHHTTCEEEEEET-TEEEEEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEeeCCC-CCCCeeeeEECHhHHHHHHH
Confidence 5666788888888753 3678999999997 9999999999999999999875332 23455556677765444433
Q ss_pred h
Q 042785 459 A 459 (604)
Q Consensus 459 ~ 459 (604)
+
T Consensus 109 ~ 109 (140)
T 2nnn_A 109 G 109 (140)
T ss_dssp H
T ss_pred H
Confidence 3
No 59
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=87.59 E-value=0.35 Score=42.56 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=52.3
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHh
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKA 459 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (604)
....++..+..||..- .-+++..|...|. .+..+|++++++|++.|||+-..+.. ++|.++-.||++-..-+.++
T Consensus 45 l~~~~~~iL~~L~~~~--~~~~~~ela~~l~--i~~~tvs~~l~~Le~~Gli~r~~~~~-d~R~~~~~lT~~G~~~~~~~ 119 (160)
T 3boq_A 45 LSLAKFDAMAQLARNP--DGLSMGKLSGALK--VTNGNVSGLVNRLIKDGMVVKAMSAD-DRRSFSAKLTDAGLTTFKQA 119 (160)
T ss_dssp CCHHHHHHHHHHHHCT--TCEEHHHHHHHCS--SCCSCHHHHHHHHHHHTSEEEC---------CEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CCCCHHHHHHHHC--CChhhHHHHHHHHHHCCCEEeecCCC-CCCeEEEEEChhHHHHHHHH
Confidence 5566888888885322 3589999999997 99999999999999999998765443 45666666887755544443
Q ss_pred h
Q 042785 460 L 460 (604)
Q Consensus 460 ~ 460 (604)
.
T Consensus 120 ~ 120 (160)
T 3boq_A 120 S 120 (160)
T ss_dssp H
T ss_pred H
Confidence 3
No 60
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=87.17 E-value=0.3 Score=44.55 Aligned_cols=78 Identities=13% Similarity=0.140 Sum_probs=54.7
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+.+|+..=+-..+++..|...|. +++.+|+++|++|++.|||+-..+.. .+|.++-.||++-..-+.+
T Consensus 66 glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~--is~~tvs~~l~~Le~~GlV~r~~~~~-DrR~~~~~LT~~G~~~~~~ 142 (181)
T 2fbk_A 66 GLNAAGWDLLLTLYRSAPPEGLRPTELSALAA--ISGPSTSNRIVRLLEKGLIERREDER-DRRSASIRLTPQGRALVTH 142 (181)
T ss_dssp TCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCS--CCSGGGSSHHHHHHHHTSEECCC--------CCBEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCcCEEecCCCC-CCCeeEEEECHHHHHHHHH
Confidence 35667888999998753333589999999997 99999999999999999998764432 3455555677765444444
Q ss_pred h
Q 042785 459 A 459 (604)
Q Consensus 459 ~ 459 (604)
+
T Consensus 143 ~ 143 (181)
T 2fbk_A 143 L 143 (181)
T ss_dssp H
T ss_pred H
Confidence 3
No 61
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=86.99 E-value=0.6 Score=41.84 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=55.0
Q ss_pred CCCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHH
Q 042785 378 KSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAK 457 (604)
Q Consensus 378 ~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (604)
......++..+..|++.= -.-+++..|...|. ++..+|+++|++|++.|||+-..+.. .+|.++-.||++-..-+.
T Consensus 42 ~glt~~q~~vL~~l~~~~-~~~~t~~eLa~~l~--~~~~tvs~~l~~Le~~Glv~r~~~~~-DrR~~~l~LT~~G~~~~~ 117 (168)
T 3u2r_A 42 FELSAQQYNTLRLLRSVH-PEGMATLQIADRLI--SRAPDITRLIDRLDDRGLVLRTRKPE-NRRVVEVALTDAGLKLLK 117 (168)
T ss_dssp TTCCHHHHHHHHHHHHHT-TSCEEHHHHHHHC-----CTHHHHHHHHHHHTTSEEEEEETT-EEEEEEEEECHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhcC-CCCcCHHHHHHHHC--CChhhHHHHHHHHHHCCCEeecCCCC-CCCeeEeEECHHHHHHHH
Confidence 345667888888887731 13589999999997 99999999999999999999765432 455666668876554444
Q ss_pred Hhh
Q 042785 458 KAL 460 (604)
Q Consensus 458 ~~~ 460 (604)
++.
T Consensus 118 ~~~ 120 (168)
T 3u2r_A 118 DLE 120 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 62
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=86.93 E-value=0.43 Score=41.77 Aligned_cols=75 Identities=16% Similarity=0.238 Sum_probs=52.2
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+..|+.. .-+++..|...|. +++.+|++++++|++.|||+-..+.. .+|..+-.+|++-..-+.+
T Consensus 44 ~l~~~~~~iL~~l~~~---~~~t~~ela~~l~--~s~~tvs~~l~~Le~~glv~r~~~~~-d~R~~~~~lT~~G~~~~~~ 117 (153)
T 2pex_A 44 DLTYPQYLVMLVLWET---DERSVSEIGERLY--LDSATLTPLLKRLQAAGLVTRTRAAS-DERQVIIALTETGRALRSK 117 (153)
T ss_dssp TCCHHHHHHHHHHHHS---CSEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEC--------CEEEECHHHHHGGGG
T ss_pred CCCHHHHHHHHHHHhC---CCcCHHHHHHHhC--CCcccHHHHHHHHHHCCCEeecCCcc-cCCeeEeeECHHHHHHHHH
Confidence 3455678888888763 4579999999997 99999999999999999999765432 3445555677765544443
Q ss_pred h
Q 042785 459 A 459 (604)
Q Consensus 459 ~ 459 (604)
+
T Consensus 118 ~ 118 (153)
T 2pex_A 118 A 118 (153)
T ss_dssp S
T ss_pred H
Confidence 3
No 63
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=86.74 E-value=0.58 Score=40.01 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=52.4
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHH
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEA 456 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (604)
....++..+.+|+.. .-+++..|...|. .++.+|++++++|++.|||+-..+.. .+|..+-.+|++-...+
T Consensus 29 l~~~~~~iL~~l~~~---~~~~~~ela~~l~--is~~~vs~~l~~L~~~gli~~~~~~~-d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 29 ISLTRYSILQTLLKD---APLHQLALQERLQ--IDRAAVTRHLKLLEESGYIIRKRNPD-NQREVLVWPTEQAREAL 99 (142)
T ss_dssp SCHHHHHHHHHHHHH---CSBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECSS-STTCEEEEECHHHHHHH
T ss_pred CCHHHHHHHHHHHhC---CCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEecCCCC-CCCeeEEEECHHHHHHH
Confidence 445677778887763 3478999999997 99999999999999999998765432 23444556777655444
No 64
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=86.73 E-value=1.1 Score=38.29 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=50.2
Q ss_pred CCCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccccccc-ccceee
Q 042785 378 KSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRR-LGKRVI 444 (604)
Q Consensus 378 ~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 444 (604)
.....++++.|+.|+++=. +-++...|..++. .++.+|+++|++|++.|||+...+-. -+++|.
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~-~gi~qkeLa~~~~--l~~~tvt~iLk~LE~kglIkr~~~~~~~~rKvy 80 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGN-KGIWSRDVRYKSN--LPLTEINKILKNLESKKLIKAVKSVAASKKKVY 80 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCT-TCEEHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEECCSSCSSCCEE
T ss_pred cCCCHHHHHHHHHHHHcCC-CCcCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEecCCCCCCcEEE
Confidence 3456679999999997432 3689999999999 99999999999999999999544433 555543
No 65
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=86.43 E-value=0.55 Score=45.29 Aligned_cols=51 Identities=24% Similarity=0.439 Sum_probs=42.1
Q ss_pred chhHHHHHHhhhhccceehh--hhhhhhhhhhhhHHHHHHHHHHHHHhcccccccc
Q 042785 383 DDQIYMKALYYALSMNYVTI--AKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGS 436 (604)
Q Consensus 383 ~~~~y~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (604)
....|+++||+.-.- -++. ..|...|. .++.+|++++++|++.|||+-..+
T Consensus 7 ~~e~yL~~i~~l~~~-~~~~~~~~la~~l~--vs~~tvs~~l~~Le~~GlV~r~~~ 59 (226)
T 2qq9_A 7 TTEMYLRTIYELEEE-GVTPLRARIAERLE--QSGPTVSQTVARMERDGLVVVASD 59 (226)
T ss_dssp HHHHHHHHHHHHHHH-TCCCBHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEECTT
T ss_pred HHHHHHHHHHHHhhc-CCCccHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEeCC
Confidence 457899999986542 3444 89999998 899999999999999999987655
No 66
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=85.86 E-value=1.4 Score=38.32 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=58.8
Q ss_pred CCcchhHHHHHHhhhh---ccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHH
Q 042785 380 PQLDDQIYMKALYYAL---SMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEA 456 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (604)
..+..|..+.+|+++. |-...+..+|...+. ..++++++++++|++.|||+-... --|..+ -.||+.=..-+
T Consensus 14 l~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~--l~~stLsR~l~rLe~~GLV~r~~~-~D~R~~--v~LT~~G~~~l 88 (96)
T 2obp_A 14 IDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQ--LPMSVLRRVLTQLQAAGLADVSVE-ADGRGH--ASLTQEGAALA 88 (96)
T ss_dssp CCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEEC-TTSCEE--EEECHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhC--CchhhHHHHHHHHHHCCCEEeecC-CCCcee--EEECHHHHHHH
Confidence 4556788888888763 556789999999999 999999999999999999997544 233334 37888776666
Q ss_pred HHhhc
Q 042785 457 KKALD 461 (604)
Q Consensus 457 ~~~~~ 461 (604)
++++.
T Consensus 89 ~~~~p 93 (96)
T 2obp_A 89 AQLFP 93 (96)
T ss_dssp HHHCC
T ss_pred HHhcC
Confidence 65543
No 67
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=85.69 E-value=0.83 Score=43.30 Aligned_cols=78 Identities=18% Similarity=0.112 Sum_probs=57.8
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..|.+|++. .-+++..|...|. ++..+|+++|++|++.|||+-..+. -.+|+++-.||++-..-+++
T Consensus 45 gLt~~q~~iL~~L~~~---~~~t~~eLa~~l~--i~~stvs~~l~~Le~~GlV~r~~~~-~DrR~~~l~LT~~G~~~~~~ 118 (207)
T 2fxa_A 45 DLNINEHHILWIAYQL---NGASISEIAKFGV--MHVSTAFNFSKKLEERGYLRFSKRL-NDKRNTYVQLTEEGTEVFWS 118 (207)
T ss_dssp TCCHHHHHHHHHHHHH---TSEEHHHHHHHTT--CCHHHHHHHHHHHHHHTSEEEECC-------CEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHC---CCcCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEecCC-CCCceEEEEECHHHHHHHHH
Confidence 4667788889998875 3589999999998 8999999999999999999876543 34666777788876666665
Q ss_pred hhcc
Q 042785 459 ALDI 462 (604)
Q Consensus 459 ~~~~ 462 (604)
+...
T Consensus 119 ~~~~ 122 (207)
T 2fxa_A 119 LLEE 122 (207)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 68
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=85.67 E-value=0.64 Score=37.89 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=44.3
Q ss_pred cchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhh
Q 042785 382 LDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLT 449 (604)
Q Consensus 382 ~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (604)
..++.-+.+|+.. .-+++..|...|. .+..+|++++++|++.|||+..... ++|...-.+|
T Consensus 20 ~~~~~il~~l~~~---~~~s~~ela~~l~--is~~tv~~~l~~L~~~glv~~~~~~--~~r~~~~~~t 80 (109)
T 1sfx_A 20 PSDVRIYSLLLER---GGMRVSEIARELD--LSARFVRDRLKVLLKRGFVRREIVE--KGWVGYIYSA 80 (109)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEEEE--SSSEEEEEEE
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEeec--CCceEEEEec
Confidence 3455555555442 4578999999997 9999999999999999999976654 4444443344
No 69
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=85.40 E-value=1 Score=36.67 Aligned_cols=57 Identities=12% Similarity=0.274 Sum_probs=45.7
Q ss_pred eehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhc
Q 042785 399 YVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALD 461 (604)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (604)
.+++..|...|. +++.+|++.+.+|++.|||+.... |+++. -.+|++.+.++-+.|.
T Consensus 38 ~~s~~ela~~l~--is~~tvs~~l~~L~~~glv~~~~~---~r~~~-y~l~~~~~~~l~~~l~ 94 (99)
T 3cuo_A 38 GTSAGELTRITG--LSASATSQHLARMRDEGLIDSQRD---AQRIL-YSIKNEAVNAIIATLK 94 (99)
T ss_dssp SEEHHHHHHHHC--CCHHHHHHHHHHHHHTTSEEEEEC---SSCEE-EEECCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEEec---CCEEE-EEEChHHHHHHHHHHH
Confidence 689999999997 999999999999999999987653 44444 4477777777766654
No 70
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=85.24 E-value=0.98 Score=39.41 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=42.5
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhh
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKAL 460 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (604)
.-.+++.|...|. +++++|++.+.+|++.|||+.. |-|+++..+ ++...+.++-+.+
T Consensus 55 ~~~s~~eLa~~l~--is~stvs~~L~~L~~~Glv~~~---~~gr~~~y~-l~~~~~~~~~~~l 111 (122)
T 1u2w_A 55 EELCVCDIANILG--VTIANASHHLRTLYKQGVVNFR---KEGKLALYS-LGDEHIRQIMMIA 111 (122)
T ss_dssp SCEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEC-------CCEEE-ESCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCeEEE---EECCEEEEE-ECHHHHHHHHHHH
Confidence 5579999999997 9999999999999999999874 456666554 6666666655443
No 71
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=84.89 E-value=0.61 Score=40.84 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=48.9
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccc-ccccccceeeehhhhHHHHHHHHH
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAK-GSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
....++..+..| .-.-++++.|...|. .++.+|++++++|++.|||+-. ......+|.++-.+|++-..-+.+
T Consensus 36 lt~~q~~iL~~l----~~~~~t~~eLa~~l~--~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~ 109 (151)
T 3kp7_A 36 ISAEQSHVLNML----SIEALTVGQITEKQG--VNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKE 109 (151)
T ss_dssp CCHHHHHHHHHH----HHSCBCHHHHHHHHC--SCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHH
T ss_pred CCHHHHHHHHHH----HcCCcCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHH
Confidence 445566666666 346689999999998 9999999999999999999963 112234566666677765444443
Q ss_pred h
Q 042785 459 A 459 (604)
Q Consensus 459 ~ 459 (604)
+
T Consensus 110 ~ 110 (151)
T 3kp7_A 110 R 110 (151)
T ss_dssp H
T ss_pred H
Confidence 3
No 72
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=84.86 E-value=1.3 Score=38.31 Aligned_cols=67 Identities=16% Similarity=0.307 Sum_probs=49.3
Q ss_pred HHHHhhhhc-ccee-hhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 388 MKALYYALS-MNYV-TIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 388 ~~~~~~~l~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.+++...|+ -+.+ +...|...|. +|.++||+-+.+|+++|+|+.....+.|-.|. .++.+.+.++-.
T Consensus 30 ~~~I~~~l~~g~~lps~~eLa~~lg--VSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~--~~~~~~~~~~~~ 98 (102)
T 2b0l_A 30 IEHIFEELDGNEGLLVASKIADRVG--ITRSVIVNALRKLESAGVIESRSLGMKGTYIK--VLNNKFLIELEN 98 (102)
T ss_dssp HHHHTTSSBTTEEEECHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECSSSCEEEE--ECCHHHHHHHHH
T ss_pred HHHHHhhhcCCCcCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEe--cCCHHHHHHHHH
Confidence 344445553 4555 9999999998 99999999999999999998765335576665 456666666544
No 73
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=84.61 E-value=1 Score=39.23 Aligned_cols=78 Identities=9% Similarity=0.123 Sum_probs=48.6
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+..|++. |-.-+++..|...|. .+..+|++++++|++.|||+-..+.. .+|+.+-.||++=..-+++
T Consensus 38 glt~~q~~vL~~l~~~-~~~~~t~~eLa~~l~--~~~~~vs~~l~~L~~~Glv~r~~~~~-DrR~~~~~LT~~G~~~~~~ 113 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYEN-QESGIIQKDLAQFFG--RRGASITSMLQGLEKKGYIERRIPEN-NARQKNIYVLPKGAALVEE 113 (148)
T ss_dssp TCCHHHHHHHHHHHHH-TTTCCCHHHHHHC--------CHHHHHHHHHHTTSBCCC---------CCCCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC-CCCCCCHHHHHHHHC--CChhHHHHHHHHHHHCCCEEeeCCCC-CchhheeeECHHHHHHHHH
Confidence 4566788888888874 224578999999998 99999999999999999998764332 3456666688765544444
Q ss_pred hh
Q 042785 459 AL 460 (604)
Q Consensus 459 ~~ 460 (604)
+.
T Consensus 114 ~~ 115 (148)
T 3jw4_A 114 FN 115 (148)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 74
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=84.52 E-value=0.67 Score=38.70 Aligned_cols=58 Identities=24% Similarity=0.336 Sum_probs=46.3
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhc
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALD 461 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (604)
.-.+++.|...|. +++.+|++.+.+|++.|+|+. +|-|+++..+ +|+..+.++-..|.
T Consensus 35 ~~~~~~ela~~l~--is~~tvs~~L~~L~~~Glv~~---~~~g~~~~y~-l~~~~~~~~~~~l~ 92 (102)
T 3pqk_A 35 GEFSVGELEQQIG--IGQPTLSQQLGVLRESGIVET---RRNIKQIFYR-LTEAKAAQLVNALY 92 (102)
T ss_dssp CCBCHHHHHHHHT--CCTTHHHHHHHHHHHTTSEEE---ECSSSCCEEE-ECSSTHHHHHHHHH
T ss_pred CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCeEE---EEeCCEEEEE-ECcHHHHHHHHHHH
Confidence 4479999999996 999999999999999999986 3467676655 77777766665553
No 75
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=84.44 E-value=1.1 Score=40.03 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=47.0
Q ss_pred CCcchhHHHHHHhhhhcc--ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHH
Q 042785 380 PQLDDQIYMKALYYALSM--NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAK 457 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (604)
....+|..+.+|++.-+- .-+|.+.|...+. .+..+|+.+|++|++.|||+-. +. -.+|+.+-.||++=..-+.
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~--~~~~tvsr~v~~Le~~glVr~~-~~-~DrR~~~v~LT~~G~~~~~ 106 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIG--VERTTLTRNLEVMRRDGLVRVM-AG-ADARCKRIELTAKGRAALQ 106 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHT--CCHHHHHHHHHHHHHTTSBC-------------CCBCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHC--CChhhHHHHHHHHHHCCCEEee-CC-CCCCeeEEEECHHHHHHHH
Confidence 556677777777764332 2378899999998 9999999999999999999644 32 3678888889987544444
Q ss_pred Hh
Q 042785 458 KA 459 (604)
Q Consensus 458 ~~ 459 (604)
++
T Consensus 107 ~~ 108 (148)
T 4fx0_A 107 KA 108 (148)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 76
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=84.34 E-value=1.3 Score=39.29 Aligned_cols=75 Identities=16% Similarity=0.250 Sum_probs=53.0
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
....+|..+..||+. |-.-++++.|...|. .+..+|+++|++|++.|||+-..+.. -+|+++-.||++=..-+++
T Consensus 33 Lt~~q~~vL~~L~~~-~~~~~t~~eLa~~l~--~~~~tvs~~v~~Le~~Glv~r~~~~~-DrR~~~l~LT~~G~~~~~~ 107 (147)
T 4b8x_A 33 LTFARYEALVLLTFS-KSGELPMSKIGERLM--VHPTSVTNTVDRLVRSGLVAKRPNPN-DGRGTLATITDKGREVVEA 107 (147)
T ss_dssp CCHHHHHHHHHHHTS-GGGEEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECC-----CEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHC-CCCCcCHHHHHHHHC--CCHHHHHHHHHHHHhCCCEEEeecCC-cCceeEEEECHHHHHHHHH
Confidence 455566666666542 445589999999998 99999999999999999999766543 3566777788764433333
No 77
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=84.07 E-value=1 Score=39.05 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=50.7
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+.+|++. .-+++..|...|. .++.+|++++++|++.|||+-..+.. .+|..+-.+|++-..-+.+
T Consensus 37 ~l~~~~~~iL~~l~~~---~~~t~~ela~~l~--~~~~tvs~~l~~Le~~Glv~r~~~~~-D~R~~~~~lT~~G~~~~~~ 110 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSA---SDCSVQKISDILG--LDKAAVSRTVKKLEEKKYIEVNGHSE-DKRTYAINLTEMGQELYEV 110 (148)
T ss_dssp TCCHHHHHHHHHHHHS---SSBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEC----------CCBEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcC---CCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEeecCCC-CcceeEeEECHhHHHHHHH
Confidence 4566688888887753 3678999999998 99999999999999999998764332 2334445677655444444
Q ss_pred h
Q 042785 459 A 459 (604)
Q Consensus 459 ~ 459 (604)
+
T Consensus 111 ~ 111 (148)
T 3nrv_A 111 A 111 (148)
T ss_dssp H
T ss_pred H
Confidence 3
No 78
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=83.50 E-value=0.75 Score=44.93 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=54.0
Q ss_pred chhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhcc
Q 042785 383 DDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALDI 462 (604)
Q Consensus 383 ~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (604)
.---|+||+|+. ...|+...|...|. .+..+||..+++|.+.|||+-.. | .-.||++=..-+.++...
T Consensus 16 s~EdYLk~I~~L--~~~V~~~~LA~~Lg--vS~~SV~~~lkkL~e~GLV~~~~----~----Gv~LTe~G~~~A~~i~~r 83 (200)
T 2p8t_A 16 TVEDVLAVIFLL--KEPLGRKQISERLE--LGEGSVRTLLRKLSHLDIIRSKQ----R----GHFLTLKGKEIRDKLLSM 83 (200)
T ss_dssp CHHHHHHHHHHT--TSCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEC----------CEEECHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHH--cCCccHHHHHHHhC--CCHHHHHHHHHHHHHCCCEEEeC----C----CeEECHHHHHHHHHHHHH
Confidence 344588999997 47899999999999 99999999999999999998765 1 446787766666666544
No 79
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=83.48 E-value=1.5 Score=37.44 Aligned_cols=62 Identities=16% Similarity=0.295 Sum_probs=45.2
Q ss_pred hhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHH
Q 042785 384 DQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLME 455 (604)
Q Consensus 384 ~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (604)
.+..+.+|+. ...+++.|...|. +++.+|++.|.+|++.|+|.-. |-|+++. -.++.+++.+
T Consensus 34 ~~~il~~L~~----~~~s~~ela~~l~--is~stvsr~l~~Le~~Glv~~~---~~~r~~~-~~~~~~~~~~ 95 (119)
T 2lkp_A 34 RLMILTQLRN----GPLPVTDLAEAIG--MEQSAVSHQLRVLRNLGLVVGD---RAGRSIV-YSLYDTHVAQ 95 (119)
T ss_dssp HHHHHHHHHH----CCCCHHHHHHHHS--SCHHHHHHHHHHHHHHCSEEEE---EETTEEE-EEESCHHHHH
T ss_pred HHHHHHHHHH----CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEE---ecCCEEE-EEEchHHHHH
Confidence 4555555554 4689999999997 9999999999999999999763 3455554 3455444443
No 80
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=83.33 E-value=1.3 Score=37.06 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=37.6
Q ss_pred ccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccc
Q 042785 396 SMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGK 441 (604)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (604)
|=..+|+..|..+|. ++.++|++.|.+|+++|+|+..|.+. |.
T Consensus 24 pg~~~t~~eLA~~Lg--vsr~tV~~~L~~Le~~G~I~~~g~~~-~~ 66 (81)
T 1qbj_A 24 EGKATTAHDLSGKLG--TPKKEINRVLYSLAKKGKLQKEAGTP-PL 66 (81)
T ss_dssp TTCCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEESSSS-CE
T ss_pred CCCCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEecCCCC-Ce
Confidence 344899999999999 99999999999999999999887554 55
No 81
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=82.93 E-value=1.3 Score=37.82 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=47.8
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhcc
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALDI 462 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (604)
.-++++.|...|. +++++|++.+.+|++.|+|+... -|+++.. .+|+..+.++-+.|..
T Consensus 37 ~~~s~~eLa~~lg--is~stvs~~L~~L~~~GlV~~~~---~gr~~~y-~l~~~~~~~l~~~l~~ 95 (108)
T 2kko_A 37 GERAVEAIATATG--MNLTTASANLQALKSGGLVEARR---EGTRQYY-RIAGEDVARLFALVQV 95 (108)
T ss_dssp CCEEHHHHHHHHT--CCHHHHHHHHHHHHHHTSEEEEE---ETTEEEE-EESCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCeEEEE---eCCEEEE-EEChHHHHHHHHHHHH
Confidence 4579999999997 99999999999999999998753 5666554 5778888888777654
No 82
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=82.90 E-value=1.2 Score=38.54 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=47.1
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhcc
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALDI 462 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (604)
.-.+++.|...|. +++.+|++.+.+|++.|+|+... -|+.++. .+|...+.++..++..
T Consensus 30 ~~~~~~eLa~~l~--is~~tvs~hL~~L~~~GlV~~~~---~gr~~~y-~l~~~~~~~l~~~~~~ 88 (118)
T 3f6o_A 30 GPATVSELAKPFD--MALPSFMKHIHFLEDSGWIRTHK---QGRVRTC-AIEKEPFTAVEAWLAE 88 (118)
T ss_dssp CCEEHHHHHTTCC--SCHHHHHHHHHHHHHTTSEEEEE---ETTEEEE-EECSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC--cCHHHHHHHHHHHHHCCCeEEEe---cCCEEEE-EECHHHHHHHHHHHHH
Confidence 5579999999997 99999999999999999998643 3665554 4787777777666653
No 83
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=82.69 E-value=1.3 Score=38.38 Aligned_cols=58 Identities=22% Similarity=0.197 Sum_probs=45.2
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhc
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALD 461 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (604)
.-.+++.|...|. +++++|++.+.+|++.|||+.. |-|+++..+ +|+..+.++-..|.
T Consensus 33 ~~~~~~eLa~~lg--is~stvs~~L~~L~~~GlV~~~---~~gr~~~y~-l~~~~~~~~~~~l~ 90 (118)
T 2jsc_A 33 GVCYPGQLAAHLG--LTRSNVSNHLSCLRGCGLVVAT---YEGRQVRYA-LADSHLARALGELV 90 (118)
T ss_dssp TCCSTTTHHHHHS--SCHHHHHHHHHHHTTTTSEEEE---ECSSSEEEE-ESSHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCceEEE---EECCEEEEE-EChHHHHHHHHHHH
Confidence 3468889999996 9999999999999999999875 346666544 77777776665543
No 84
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=82.50 E-value=1.1 Score=46.73 Aligned_cols=82 Identities=11% Similarity=0.120 Sum_probs=63.1
Q ss_pred cCCCCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHH
Q 042785 376 CDKSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLME 455 (604)
Q Consensus 376 ~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (604)
..-.....++..+..|++. |-.-+|+..|..+|. .++.+++.+|+||++.|||+...+.. -+|+++-.||++-..-
T Consensus 398 ~~~~lt~~q~~vl~~l~~~-~~~~~~~~~l~~~~~--~~~~~~t~~~~~le~~g~v~r~~~~~-D~R~~~i~lT~~g~~~ 473 (487)
T 1hsj_A 398 KKFNLNYEEIYILNHILRS-ESNEISSKEIAKCSE--FKPYYLTKALQKLKDLKLLSKKRSLQ-DERTVIVYVTDTQKAN 473 (487)
T ss_dssp SSCCCCHHHHHHHHHHHTC-SCSEEEHHHHHHSSC--CCHHHHHHHHHHHHTTTTSCCEECCS-SSSCCEEECCSSHHHH
T ss_pred HhcCCCHHHHHHHHHHHhC-CCCCcCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEeecCCCC-CCCeEEEEECHHHHHH
Confidence 3445667788888888873 113579999999999 89999999999999999998765543 4677888899887665
Q ss_pred HHHhhc
Q 042785 456 AKKALD 461 (604)
Q Consensus 456 ~~~~~~ 461 (604)
++++..
T Consensus 474 ~~~~~~ 479 (487)
T 1hsj_A 474 IQKLIS 479 (487)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 85
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=82.23 E-value=1.5 Score=36.67 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=44.0
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhc
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALD 461 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (604)
.-++++.|...|. +++.+|++.+.+|++.|||+.... |+++. -.+|++-+..+...+.
T Consensus 33 ~~~~~~ela~~l~--is~~tv~~~l~~L~~~gli~~~~~---gr~~~-y~l~~~~~~~~~~~~~ 90 (114)
T 2oqg_A 33 ADQSASSLATRLP--VSRQAIAKHLNALQACGLVESVKV---GREIR-YRALGAELNKTARTLE 90 (114)
T ss_dssp SCBCHHHHHHHSS--SCHHHHHHHHHHHHHTTSEEEEEE---TTEEE-EEECSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCeeEEec---CCEEE-EEechHHHHHHHHHHH
Confidence 4478999999997 999999999999999999987544 44433 3477776666555443
No 86
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=81.48 E-value=2 Score=37.73 Aligned_cols=56 Identities=13% Similarity=0.254 Sum_probs=44.1
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHh
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKA 459 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (604)
.-.+++.|...|. +++++|++.+.+|++.|+|... |-|+++..+ ++...+.++-+.
T Consensus 58 ~~~s~~ela~~lg--is~stvs~~L~~Le~~Glv~~~---~~gr~~~y~-l~~~~l~~~~~~ 113 (122)
T 1r1t_A 58 SELCVGDLAQAIG--VSESAVSHQLRSLRNLRLVSYR---KQGRHVYYQ-LQDHHIVALYQN 113 (122)
T ss_dssp CCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEE---EETTEEEEE-ESSHHHHHHHHH
T ss_pred CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCeEEE---EeCCEEEEE-EChHHHHHHHHH
Confidence 4578999999997 9999999999999999999863 457776554 666666655443
No 87
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=81.33 E-value=2.2 Score=39.13 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=48.6
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhc
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALD 461 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (604)
.-.+++.|...|. +++++|++.+.+|++.|||+.. |-|+.++.+ +|...+.++.++++
T Consensus 70 ~~~t~~eLa~~lg--ls~stvs~hL~~L~~aGlV~~~---~~Gr~~~y~-lt~~~~~~l~~~l~ 127 (151)
T 3f6v_A 70 GEQTVNNLAAHFP--ASRSAISQHLRVLTEAGLVTPR---KDGRFRYYR-LDPQGLAQLRALFD 127 (151)
T ss_dssp CCEEHHHHHTTSS--SCHHHHHHHHHHHHHTTSEEEE---EETTEEEEE-ECHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEE---ecCCEEEEE-EChHHHHHHHHHHH
Confidence 4578999999998 9999999999999999999964 567776554 78888888877765
No 88
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=80.13 E-value=2.4 Score=37.59 Aligned_cols=78 Identities=13% Similarity=0.209 Sum_probs=54.5
Q ss_pred CCCcchhHHHHHHhhhh--ccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccc-cceeeehhhh--HHHH
Q 042785 379 SPQLDDQIYMKALYYAL--SMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRL-GKRVIHSTLT--KKKL 453 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~ 453 (604)
...+++++.+-.|+... +..+.|+..|...+. .+..+|.++|++|++.|||+-...++- |+..-.=+++ =.||
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~--~s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~pl~~kL 106 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMT--VSAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEPLWEKL 106 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSS--SCHHHHHHHHHHHHHTTSSEECC----------CEECHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHHHHHHH
Confidence 35667888777777643 356789999999998 999999999999999999988765444 7766555665 5677
Q ss_pred HHHHH
Q 042785 454 MEAKK 458 (604)
Q Consensus 454 ~~~~~ 458 (604)
.++-+
T Consensus 107 ~~~~~ 111 (128)
T 2vn2_A 107 VHHLY 111 (128)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 89
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=79.36 E-value=2 Score=34.63 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=35.0
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceee
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVI 444 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (604)
.-+++..|...|. +++++|++.+.+|+++|+|+.... +-|+.+.
T Consensus 13 ~~~s~~eLa~~lg--vs~~tv~r~L~~L~~~GlI~~~~~-~~gr~~~ 56 (81)
T 2htj_A 13 NGGKTAEIAEALA--VTDYQARYYLLLLEKAGMVQRSPL-RRGMATY 56 (81)
T ss_dssp CCCCHHHHHHHHT--SCHHHHHHHHHHHHHHTSEEEECC-SSSSSCE
T ss_pred CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEecc-CCCCcEE
Confidence 3479999999998 999999999999999999985332 3344443
No 90
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=79.24 E-value=2.1 Score=35.16 Aligned_cols=50 Identities=14% Similarity=0.142 Sum_probs=40.9
Q ss_pred HHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccc
Q 042785 389 KALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGK 441 (604)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (604)
.+|.+.=+-+.+|+..|..+|. ++..+|++.|.+|+++|+|+..|.+. |+
T Consensus 21 ~~L~~~~~~~~~t~~eLA~~Lg--vs~~tV~~~L~~L~~~G~I~~~g~~~-~~ 70 (77)
T 1qgp_A 21 KFLEELGEGKATTAHDLSGKLG--TPKKEINRVLYSLAKKGKLQKEAGTP-PL 70 (77)
T ss_dssp HHHHHHCSSSCEEHHHHHHHHC--CCHHHHHHHHHHHHHHTSEEEECSSS-CE
T ss_pred HHHHHcCCCCCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEecCCCC-Cc
Confidence 4555443355799999999999 99999999999999999999988654 54
No 91
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=78.83 E-value=1.8 Score=38.46 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=47.2
Q ss_pred cccee-hhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeeh---hhhHHHHHHHHHhhcc
Q 042785 396 SMNYV-TIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHS---TLTKKKLMEAKKALDI 462 (604)
Q Consensus 396 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 462 (604)
|=+.+ +...|...|. +|.++||+.+..|+++|||+...+ .|-.|... ....+++.+++..|+.
T Consensus 34 pG~~LPser~La~~~g--VSr~tVReAl~~L~~eGlv~~~~g--~G~~V~~~~~~~~~~~~~~~~r~~l~~ 100 (134)
T 4ham_A 34 EGEKILSIREFASRIG--VNPNTVSKAYQELERQEVIITVKG--KGTFIANQTDKLSSPKKLAETRTKLKE 100 (134)
T ss_dssp TTCEECCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEETT--TEEEECCCSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHC--CCHHHHHHHHHHHHHCCcEEEEcC--cEEEEeCCchhhccHHHHHHHHHHHHH
Confidence 33455 7788999998 999999999999999999987644 36666432 2345677788777654
No 92
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=78.62 E-value=2.1 Score=38.24 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=45.4
Q ss_pred cee-hhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhH----HHHHHHHHhhcc
Q 042785 398 NYV-TIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTK----KKLMEAKKALDI 462 (604)
Q Consensus 398 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 462 (604)
+.+ +...|...|. +|.++||+.+.+|+++|+|+...+ .|-.|.-....+ +.+.+++..|+.
T Consensus 26 ~~LPse~~La~~~g--vSr~tVr~Al~~L~~~Gli~~~~g--~G~~V~~~~~~~~~~~~~~~~~R~~lE~ 91 (129)
T 2ek5_A 26 QRVPSTNELAAFHR--INPATARNGLTLLVEAGILYKKRG--IGMFVSAQAPALIRERRDAAFAATYVAP 91 (129)
T ss_dssp SCBCCHHHHHHHTT--CCHHHHHHHHHHHHTTTSEEEETT--TEEEECTTHHHHHHHHHHHHHHHHHTHH
T ss_pred CcCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCcEEEecC--CEEEEecCchHhhhhHhHHHHHHHHHHH
Confidence 445 7888899998 999999999999999999987544 477776543322 355667776665
No 93
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=78.46 E-value=2.8 Score=35.32 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=44.2
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhh
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKAL 460 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (604)
.-.+++.|...|. +++++|++.+.+|++.|+|+... -|+++.. .+|...+.++-+.+
T Consensus 38 ~~~~~~ela~~l~--is~stvs~~L~~L~~~Glv~~~~---~gr~~~y-~l~~~~~~~~~~~l 94 (106)
T 1r1u_A 38 SEASVGHISHQLN--LSQSNVSHQLKLLKSVHLVKAKR---QGQSMIY-SLDDIHVATMLKQA 94 (106)
T ss_dssp CCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEE---ETTEEEE-EESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCeEEEE---eCCEEEE-EEChHHHHHHHHHH
Confidence 4579999999997 99999999999999999998653 4655554 46777766654443
No 94
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=78.34 E-value=1.8 Score=42.89 Aligned_cols=82 Identities=13% Similarity=0.251 Sum_probs=61.8
Q ss_pred CCCCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHH
Q 042785 377 DKSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEA 456 (604)
Q Consensus 377 ~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (604)
.-.....+|..|..||+.= -+-+++..|...|. ....+++.+|++|++.|||+-.-+. --+|+++-.||++-...+
T Consensus 29 ~~~lt~~q~~vL~~L~~~~-~~~~~~~el~~~l~--~~~~t~t~~l~rLe~~G~i~R~~~~-~DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 29 EVDMTIKEFILLTYLFHQQ-ENTLPFKKIVSDLC--YKQSDLVQHIKVLVKHSYISKVRSK-IDERNTYISISEEQREKI 104 (250)
T ss_dssp TCSSCHHHHHHHHHHHSCS-CSEEEHHHHHHHSS--SCGGGTHHHHHHHHHTTSCEEEECS-SSTTSEEEECCHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHhcC-CCCcCHHHHHHHHC--CCHhhHHHHHHHHHHCCCEEecCCC-CCCCeEEEEECHHHHHHH
Confidence 3456777899999999721 13579999999998 8899999999999999999865443 346778888888766555
Q ss_pred HHhhcc
Q 042785 457 KKALDI 462 (604)
Q Consensus 457 ~~~~~~ 462 (604)
.++...
T Consensus 105 ~~~~~~ 110 (250)
T 1p4x_A 105 AERVTL 110 (250)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 95
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=76.35 E-value=3.3 Score=36.72 Aligned_cols=74 Identities=15% Similarity=0.268 Sum_probs=54.8
Q ss_pred hhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccc----cccccccee---eehhhhHHHHHHH
Q 042785 384 DQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAK----GSRRLGKRV---IHSTLTKKKLMEA 456 (604)
Q Consensus 384 ~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~ 456 (604)
|..-+.+|..- ..++...|..+|. .+..+|++.+.+|++.|+|+.. ..+++|..+ ++-.+...++.++
T Consensus 7 d~~il~~L~~~---~~~s~~ela~~lg--~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~~~~~ 81 (144)
T 2cfx_A 7 DLNIIEELKKD---SRLSMRELGRKIK--LSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERF 81 (144)
T ss_dssp HHHHHHHHHHC---SCCCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEEGGGCHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCeEEEecccChhhcCceEEEEEEEEECcccHHHH
Confidence 44444555432 4578899999998 9999999999999999999853 356789763 5555666677777
Q ss_pred HHhhcc
Q 042785 457 KKALDI 462 (604)
Q Consensus 457 ~~~~~~ 462 (604)
.+.|..
T Consensus 82 ~~~l~~ 87 (144)
T 2cfx_A 82 KSYIQT 87 (144)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 776643
No 96
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=76.14 E-value=3.6 Score=36.43 Aligned_cols=62 Identities=13% Similarity=0.197 Sum_probs=47.3
Q ss_pred eehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccc----cccccccee---eehhhh--HHHHHHHHHhhcc
Q 042785 399 YVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAK----GSRRLGKRV---IHSTLT--KKKLMEAKKALDI 462 (604)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~ 462 (604)
-++...|..+|. .++++|++.+.+|++.|+|+.- ..+++|.++ ++-... ...+.++.+.|..
T Consensus 17 ~~~~~ela~~lg--~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~~~~~~~~~~l~~ 87 (150)
T 2pn6_A 17 KYSLDEIAREIR--IPKATLSYRIKKLEKDGVIKGYYAYINPASLNLDYIVITSVKAKYGKNYHVELGNKLAQ 87 (150)
T ss_dssp TSCHHHHHHHHT--SCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEECCCTTHHHHHHHHHHT
T ss_pred CCCHHHHHHHHC--cCHHHHHHHHHHHHHCCcEEEEEeecCHHHhCCceEEEEEEEecCChhHHHHHHHHHhc
Confidence 478888999998 9999999999999999999863 346788874 322223 5677777777765
No 97
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=76.11 E-value=1.9 Score=37.13 Aligned_cols=46 Identities=17% Similarity=0.367 Sum_probs=37.1
Q ss_pred ehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHH
Q 042785 400 VTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKK 451 (604)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (604)
++++.|...|.| +++.++++.+++|++.|+|+.... |.+.-.||++
T Consensus 43 ~~~~eL~~~l~g-is~~~ls~~L~~Le~~GlV~r~~~-----r~~~y~LT~~ 88 (111)
T 3df8_A 43 QNFNDIRSSIPG-ISSTILSRRIKDLIDSGLVERRSG-----QITTYALTEK 88 (111)
T ss_dssp BCHHHHHHTSTT-CCHHHHHHHHHHHHHTTSEEEEES-----SSEEEEECHH
T ss_pred CCHHHHHHHccC-CCHHHHHHHHHHHHHCCCEEEeec-----CcEEEEECcc
Confidence 449999999932 999999999999999999986544 4445568886
No 98
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=75.19 E-value=2.9 Score=41.29 Aligned_cols=80 Identities=13% Similarity=0.187 Sum_probs=58.8
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
.....++..+..|++.=+ .-++...|...+. .++.+|+.+|++|++.|||+-..+.. -+|+++-.||++-..-+++
T Consensus 155 gLt~~q~~vL~~L~~~~~-~~~t~~eLa~~l~--i~~~tvt~~v~rLe~~GlV~R~~~~~-DrR~~~i~LT~~G~~~~~~ 230 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNK-NIVLLKDLIETIH--HKYPQTVRALNNLKKQGYLIKERSTE-DERKILIHMDDAQQDHAEQ 230 (250)
T ss_dssp SSCHHHHHHHHHHHTTTT-CCEEHHHHHHHSS--SCHHHHHHHHHHHHHHTSSEEEECSS-STTCEEEECCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCC-CCcCHHHHHHHHC--CChhhHHHHHHHHHHCCCEEeeCCCC-CCCeEEEEECHHHHHHHHH
Confidence 345566666666665311 1378888988888 89999999999999999998765543 4677777899887766666
Q ss_pred hhcc
Q 042785 459 ALDI 462 (604)
Q Consensus 459 ~~~~ 462 (604)
+...
T Consensus 231 ~~~~ 234 (250)
T 1p4x_A 231 LLAQ 234 (250)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 99
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=75.12 E-value=1.7 Score=37.09 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=40.0
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccc
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAK 434 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (604)
.....+..+..|+.. . .-+|+..|...|. .+.++|+.++++|++.|||+..
T Consensus 24 l~~~~~~il~~L~~~-~-~~~t~~ela~~l~--~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 24 LNKSVGAVYAILYLS-D-KPLTISDIMEELK--ISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp CCHHHHHHHHHHHHC-S-SCEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CChhHHHHHHHHHHc-C-CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEE
Confidence 344455566666421 1 4589999999998 9999999999999999999874
No 100
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=75.01 E-value=3 Score=35.36 Aligned_cols=52 Identities=8% Similarity=0.160 Sum_probs=39.4
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHH
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKK 451 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (604)
.-.+++.|...|. .+++.++++.+++|++.|||+......- +|.+.-.||++
T Consensus 26 ~~~~~~eLa~~l~-~is~~tls~~L~~Le~~GlI~r~~~~~d-~r~~~y~LT~~ 77 (107)
T 2hzt_A 26 GKKRTSELKRLMP-NITQKMLTQQLRELEADGVINRIVYNQV-PPKVEYELSEY 77 (107)
T ss_dssp CCBCHHHHHHHCT-TSCHHHHHHHHHHHHHTTSEEEEEECSS-SCEEEEEECTT
T ss_pred CCCCHHHHHHHhc-CCCHHHHHHHHHHHHHCCCEEEeecCCC-CCeEEEEECcc
Confidence 4568888888882 2899999999999999999997655433 34444567774
No 101
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=74.26 E-value=3.7 Score=36.31 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=38.0
Q ss_pred cccee-hhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeee
Q 042785 396 SMNYV-TIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIH 445 (604)
Q Consensus 396 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (604)
|=+.+ +...|...|. +|.++||+.+.+|+++|+|+.... .|-.|..
T Consensus 31 ~G~~lPse~~La~~~~--vSr~tvr~Al~~L~~~Gli~~~~g--~G~~V~~ 77 (126)
T 3by6_A 31 ANDQLPSVRETALQEK--INPNTVAKAYKELEAQKVIRTIPG--KGTFITG 77 (126)
T ss_dssp TTCEECCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEETT--TEEEECS
T ss_pred CCCcCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEecC--CeEEEcc
Confidence 34556 8999999998 999999999999999999987543 4767765
No 102
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=73.49 E-value=2.4 Score=33.75 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=32.1
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccc
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEA 433 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (604)
.+++++.|..+|. .+.++|.++|..|+++|||+.
T Consensus 24 ~~~s~~eLA~~lg--lsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQ--VPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHC--SCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCcEec
Confidence 4799999999999 999999999999999999976
No 103
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=72.93 E-value=4.4 Score=34.62 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=45.7
Q ss_pred hhHHHHHHhhhhccceehhhhhhhhh-hhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHH
Q 042785 384 DQIYMKALYYALSMNYVTIAKLQKKL-DKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKK 452 (604)
Q Consensus 384 ~~~y~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (604)
++.-+.+|++ .-.+++.|...| . +++.+++..+++|++.|||+...... .+|.+.-.||++=
T Consensus 24 ~~~IL~~L~~----~~~~~~eLa~~l~~--is~~tvs~~L~~Le~~GlI~r~~~~~-d~r~~~~~LT~~G 86 (112)
T 1z7u_A 24 KLSLMDELFQ----GTKRNGELMRALDG--ITQRVLTDRLREMEKDGLVHRESFNE-LPPRVEYTLTPEG 86 (112)
T ss_dssp HHHHHHHHHH----SCBCHHHHHHHSTT--CCHHHHHHHHHHHHHHTSEEEEEECC-SSCEEEEEECHHH
T ss_pred HHHHHHHHHh----CCCCHHHHHHHhcc--CCHHHHHHHHHHHHHCCCEEEeecCC-CCCeEEEEECHhH
Confidence 3444455554 457888999999 5 89999999999999999999765543 4455555688763
No 104
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=72.36 E-value=3.3 Score=35.06 Aligned_cols=53 Identities=9% Similarity=0.140 Sum_probs=41.7
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHH
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKK 452 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (604)
.-.+++.|...|.| +++.+++..+++|++.|||+...... .+|.++-.||++=
T Consensus 37 ~~~~~~eL~~~l~g-is~~~ls~~L~~Le~~GlV~r~~~~~-d~r~~~y~LT~~G 89 (107)
T 2fsw_A 37 RIIRYGELKRAIPG-ISEKMLIDELKFLCGKGLIKKKQYPE-VPPRVEYSLTPLG 89 (107)
T ss_dssp SCEEHHHHHHHSTT-CCHHHHHHHHHHHHHTTSEEEEEECS-SSCEEEEEECHHH
T ss_pred CCcCHHHHHHHccc-CCHHHHHHHHHHHHHCCCEEEeecCC-CCCeeEEEECccH
Confidence 45678888888843 89999999999999999999765433 5666777788863
No 105
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=72.01 E-value=4.6 Score=35.16 Aligned_cols=60 Identities=10% Similarity=0.141 Sum_probs=46.0
Q ss_pred cceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc----cccccceeeehhhhHHHHHHHHHhhccc
Q 042785 397 MNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG----SRRLGKRVIHSTLTKKKLMEAKKALDID 463 (604)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (604)
-..+++..|...+. ++...|+|++.+|++.|||+... .-+|+++ ..+=.|.+|-.+++.+
T Consensus 24 ~~~~s~~ela~~~~--i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~-----~~~itl~di~~~~e~~ 87 (129)
T 2y75_A 24 EGPTSLKSIAQTNN--LSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSE-----PDAITAGDIIRVLEGP 87 (129)
T ss_dssp SCCBCHHHHHHHTT--SCHHHHHHHHHHHHHTTSEEEC----CCEEESSC-----GGGCBHHHHHHHHHCC
T ss_pred CCcCCHHHHHHHHC--cCHHHHHHHHHHHHHCCceEecCCCCCceEeCCC-----HHHCcHHHHHHHHcCc
Confidence 45789999999998 99999999999999999998752 2344444 2333478888888654
No 106
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=71.56 E-value=4.3 Score=33.98 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=46.7
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhc
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALD 461 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (604)
.-.+++.|...|. .+|.+|++.+.+|++. +|+.. |-|+++.. .+++..+.++.+.|.
T Consensus 40 ~~~~~~ela~~l~--is~stvs~hL~~L~~~-lv~~~---~~gr~~~y-~l~~~~~~~~~~~l~ 96 (99)
T 2zkz_A 40 KALNVTQIIQILK--LPQSTVSQHLCKMRGK-VLKRN---RQGLEIYY-SINNPKVEGIIKLLN 96 (99)
T ss_dssp SCEEHHHHHHHHT--CCHHHHHHHHHHHBTT-TBEEE---EETTEEEE-ECCCHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHC--cCHHHHHHHHHHHHHH-hhhhe---EeCcEEEE-EEChHHHHHHHHHHH
Confidence 4578999999998 9999999999999999 99863 45887765 478888888777664
No 107
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=70.85 E-value=4.5 Score=36.07 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=55.7
Q ss_pred hhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc----cccccce---eeehhhhHHHHHHH
Q 042785 384 DQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG----SRRLGKR---VIHSTLTKKKLMEA 456 (604)
Q Consensus 384 ~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~ 456 (604)
|.--+.+|..- .-++++.|..+|. .++.+|++.+.+|++.|+|+.-+ .+++|.. .+.-.+....+.++
T Consensus 9 ~~~il~~L~~~---~~~s~~ela~~lg--~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~G~~~~a~v~v~~~~~~~~~~ 83 (151)
T 2cyy_A 9 DKKIIKILQND---GKAPLREISKITG--LAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEV 83 (151)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHC--SCHHHHHHHHHHHHHHTSSCCCCCCCCGGGGTCCEEEEEEEEECTTCHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCeEEEEEEECHHHCCccEEEEEEEEECcccHHHH
Confidence 44445555432 3578889999998 99999999999999999998643 4778985 44445667778888
Q ss_pred HHhhcc
Q 042785 457 KKALDI 462 (604)
Q Consensus 457 ~~~~~~ 462 (604)
.+.|..
T Consensus 84 ~~~l~~ 89 (151)
T 2cyy_A 84 ASNLAK 89 (151)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 887765
No 108
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=70.73 E-value=5.4 Score=34.74 Aligned_cols=74 Identities=23% Similarity=0.351 Sum_probs=51.7
Q ss_pred hhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc----ccccccee---eehhhhHHHHHHH
Q 042785 384 DQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG----SRRLGKRV---IHSTLTKKKLMEA 456 (604)
Q Consensus 384 ~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~ 456 (604)
|..-+.+|.. -.-.+...|...|. .+..+|++.+++|+++|+|+..+ .+++|..+ +.-.+....+.++
T Consensus 6 ~~~il~~L~~---~~~~~~~ela~~lg--~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~ 80 (141)
T 1i1g_A 6 DKIILEILEK---DARTPFTEIAKKLG--ISETAVRKRVKALEEKGIIEGYTIKINPKKLGYSLVTITGVDTKPEKLFEV 80 (141)
T ss_dssp HHHHHHHHHH---CTTCCHHHHHHHHT--SCHHHHHHHHHHHHHHTSSCCCCCCCCSGGGTCCEEEEEEEEECGGGHHHH
T ss_pred HHHHHHHHHH---cCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEeccccccChHHhCccEEEEEEEEECchhHHHH
Confidence 4444444432 23468899999996 89999999999999999998543 35678653 3334455667777
Q ss_pred HHhhcc
Q 042785 457 KKALDI 462 (604)
Q Consensus 457 ~~~~~~ 462 (604)
.+.|..
T Consensus 81 ~~~l~~ 86 (141)
T 1i1g_A 81 AEKLKE 86 (141)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 766654
No 109
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=70.43 E-value=0.89 Score=50.65 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=0.0
Q ss_pred cchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc
Q 042785 382 LDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG 435 (604)
Q Consensus 382 ~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (604)
..|-+|-+|+-.++.....+++.||.+|. +.-+-+..|||+|+++|+|-+..
T Consensus 500 ~~d~l~~~a~~~v~~~~~~s~s~lqr~~~--igynraar~~~~me~~giv~~~~ 551 (574)
T 2iut_A 500 EDDPLYDEAVRFVTESRRASISAVQRKLK--IGYNRAARMIEAMEMAGVVTPMN 551 (574)
T ss_dssp ------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHhcCCcCHHHHHHHhc--cChHHHHHHHHHHHHCCCCCCcc
Confidence 34889999999999999999999999999 98999999999999999997753
No 110
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=67.83 E-value=13 Score=32.30 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=52.9
Q ss_pred hhhhhhhhhcCccccCCCCCcchhHHHHHHhhhhccceehhhhhhh-hhhhhhhHHHHHHHHHHHHHhcccccccccccc
Q 042785 362 EFALVKEEMDGVTLCDKSPQLDDQIYMKALYYALSMNYVTIAKLQK-KLDKEANQSTVRKLIDKMIREGYVEAKGSRRLG 440 (604)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (604)
+| |+|....| ....+|--+-.|+. ..|+|++.|.. .+. .+.++|..=+..|+|+|||+++|.-
T Consensus 4 ~~-~~~~~~~~-------L~~~QfsiL~~L~~---~~~~t~~~Lae~~l~--~drstvsrnl~~L~r~GlVe~~~~D--- 67 (95)
T 1bja_A 4 TY-IIKASNDV-------LNEKTATILITIAK---KDFITAAEVREVHPD--LGNAVVNSNIGVLIKKGLVEKSGDG--- 67 (95)
T ss_dssp HH-HHHHTTTS-------SCHHHHHHHHHHHH---STTBCHHHHHHTCTT--SCHHHHHHHHHHHHTTTSEEEETTE---
T ss_pred hh-hhhHHhcC-------CCHHHHHHHHHHHH---CCCCCHHHHHHHHhc--ccHHHHHHHHHHHHHCCCeecCCCC---
Confidence 35 66665544 45556766666654 24999999999 665 8899999999999999999933332
Q ss_pred ceeeehhhhHHHHHHHHHh
Q 042785 441 KRVIHSTLTKKKLMEAKKA 459 (604)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~ 459 (604)
|.=.+--...+.++.+.
T Consensus 68 --l~LT~~G~~~l~~a~~~ 84 (95)
T 1bja_A 68 --LIITGEAQDIISNAATL 84 (95)
T ss_dssp --EEECHHHHHHHHHHHHH
T ss_pred --eeeCHhHHHHHHHHHHH
Confidence 33333333445554443
No 111
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=66.95 E-value=8.4 Score=34.13 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=54.7
Q ss_pred hhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccc----ccccccce---eeehhhhHHHHHHH
Q 042785 384 DQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAK----GSRRLGKR---VIHSTLTKKKLMEA 456 (604)
Q Consensus 384 ~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~ 456 (604)
|..-+++|.. -.-++...|..+|. .+..+|++.+.+|+++|+|+.- ..+++|.. .|+-.+...+..++
T Consensus 11 d~~il~~L~~---~~~~s~~ela~~lg--~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~~~~~~~~ 85 (151)
T 2dbb_A 11 DMQLVKILSE---NSRLTYRELADILN--TTRQRIARRIDKLKKLGIIRKFTIIPDIDKLGYMYAIVLIKSKVPSDADKV 85 (151)
T ss_dssp HHHHHHHHHH---CTTCCHHHHHHHTT--SCHHHHHHHHHHHHHHTSEEEEEEEECTGGGTEEEEEEEEEESSHHHHHHH
T ss_pred HHHHHHHHHH---cCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEEEecCChHHhCCCEEEEEEEEeCCCCHHHH
Confidence 4444444433 24578899999998 9999999999999999999853 35678875 56656667777777
Q ss_pred HHhhcc
Q 042785 457 KKALDI 462 (604)
Q Consensus 457 ~~~~~~ 462 (604)
.+.|..
T Consensus 86 ~~~l~~ 91 (151)
T 2dbb_A 86 ISEISD 91 (151)
T ss_dssp HHHHTT
T ss_pred HHHHHc
Confidence 777654
No 112
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=66.92 E-value=4.9 Score=35.78 Aligned_cols=52 Identities=8% Similarity=0.174 Sum_probs=40.8
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHH
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKK 451 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (604)
.-.+++.|...|.| +++.++++.+++|++.|||+...... .+|.+.-.||++
T Consensus 47 g~~~~~eLa~~l~g-is~~tls~~L~~Le~~GlV~r~~~~~-d~r~~~y~LT~~ 98 (131)
T 1yyv_A 47 GTHRFSDLRRXMGG-VSEXMLAQSLQALEQDGFLNRVSYPV-VPPHVEYSLTPL 98 (131)
T ss_dssp CCEEHHHHHHHSTT-CCHHHHHHHHHHHHHHTCEEEEEECS-SSCEEEEEECHH
T ss_pred CCCCHHHHHHHhcc-CCHHHHHHHHHHHHHCCcEEEEecCC-CCCeEEEEECcc
Confidence 45688888888832 89999999999999999999765433 355666678886
No 113
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=66.60 E-value=7.1 Score=37.26 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=49.2
Q ss_pred hhHHHHHHhhhh---ccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhh
Q 042785 384 DQIYMKALYYAL---SMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKAL 460 (604)
Q Consensus 384 ~~~y~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (604)
++-++.+|+..- .-.-++++.+..+|. ++|.+|++.|.+|++.||++-..+.| ++.|.=.+--+.-+.++++++
T Consensus 9 ~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~--isq~avSr~I~~LE~~~L~~R~~~~R-~~~v~LT~~G~~l~~~~~~~~ 85 (230)
T 3cta_A 9 YYRAIKKIKEAAEASNRAYLTSSKLADMLG--ISQQSASRIIIDLEKNGYITRTVTKR-GQILNITEKGLDVLYTEFADL 85 (230)
T ss_dssp HHHHHHHHHHHTTTSSEEECCHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEEEETT-EEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCCCcCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEEcCC-eEEEEECHHHHHHHHHHHHHH
Confidence 556666664321 122367999999998 99999999999999999998775542 233322222233445556555
Q ss_pred c
Q 042785 461 D 461 (604)
Q Consensus 461 ~ 461 (604)
.
T Consensus 86 ~ 86 (230)
T 3cta_A 86 S 86 (230)
T ss_dssp H
T ss_pred H
Confidence 4
No 114
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=66.19 E-value=5.8 Score=34.64 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=41.1
Q ss_pred CcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc
Q 042785 381 QLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG 435 (604)
Q Consensus 381 ~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (604)
...+..-+.+|+.. |-.++|+..|...|. .+.++|.+.+++|++.|||+...
T Consensus 25 t~~e~~il~~L~~~-~~~~~t~~eLa~~l~--~s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 25 TKADLNVMKSFLNE-PDRWIDTDALSKSLK--LDVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp CHHHHHHHHHHHHS-TTCCEEHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHHC-CCCCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEeeC
Confidence 34466677777642 222489999999998 99999999999999999998653
No 115
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=65.84 E-value=1.3 Score=48.66 Aligned_cols=50 Identities=16% Similarity=0.347 Sum_probs=0.0
Q ss_pred chhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccc
Q 042785 383 DDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAK 434 (604)
Q Consensus 383 ~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (604)
.|-+|-+|+-.++.....+++.||.+|. +--+-+..|||+|+++|+|-+.
T Consensus 448 ~d~l~~~a~~~v~~~~~~s~s~~qr~~~--igy~ra~~~~~~~e~~g~v~~~ 497 (512)
T 2ius_A 448 LDPLFDQAVQFVTEKRKASISGVQRQFR--IGYNRAARIIEQMEAQGIVSEQ 497 (512)
T ss_dssp ----------------------------------------------------
T ss_pred ccHHHHHHHHHHHhcCCcCHHHHHHHhc--cChHHHHHHHHHHHHCCCCCCC
Confidence 3789999999999999999999999999 8889999999999999999764
No 116
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=65.05 E-value=7.5 Score=34.67 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=49.4
Q ss_pred CCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHH
Q 042785 379 SPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLM 454 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (604)
.....++..+-.|+..=| -.+...|...|. ++..+|+.++++|++.|||+-..+.. -+|++.-.||++=..
T Consensus 28 gLt~~q~~vL~~L~~~~~--~~~~~eLa~~l~--~~~~tvs~~v~~Le~~GlV~R~~~~~-DrR~~~l~LT~~G~~ 98 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPP--EQSQIQLAKAIG--IEQPSLVRTLDQLEEKGLITRHTSAN-DRRAKRIKLTEQSSP 98 (151)
T ss_dssp CCCHHHHHHHHHHHHSCT--TSCHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEEECSS-CTTCEEEEECGGGHH
T ss_pred CCCHHHHHHHHHHHHcCC--CCcHHHHHHHHC--cCHHHHHHHHHHHHhCCCeEeecCCC-CCcchhhhcCHHHHH
Confidence 355667777777765322 345677888888 89999999999999999998654432 234455556765433
No 117
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=64.84 E-value=5.6 Score=37.21 Aligned_cols=60 Identities=10% Similarity=0.179 Sum_probs=41.3
Q ss_pred hhHHHHHHhhhhccc--eehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeee
Q 042785 384 DQIYMKALYYALSMN--YVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIH 445 (604)
Q Consensus 384 ~~~y~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (604)
+.-++..|...+... -.|+..|...|. .++.+|+..+.+|+++|||+...+++-+-++++
T Consensus 7 q~~il~~I~~~~~~~g~~~s~~eia~~lg--l~~~tv~~~l~~Le~~G~i~~~~~~~r~i~~~~ 68 (196)
T 3k2z_A 7 QRKVLLFIEEFIEKNGYPPSVREIARRFR--ITPRGALLHLIALEKKGYIERKNGKPRALRISK 68 (196)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHT--SCHHHHHHHHHHHHHTTSEECC---TTCCEESS
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHcC--CCcHHHHHHHHHHHHCCCEEecCCCcceEEecC
Confidence 344455554443222 268888888888 778899999999999999998777666666654
No 118
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=64.80 E-value=6.2 Score=35.05 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=41.8
Q ss_pred hhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccc----cccccccee
Q 042785 384 DQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAK----GSRRLGKRV 443 (604)
Q Consensus 384 ~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 443 (604)
|+--+.+|.. -.-++...|...|. .+..+|++.+.+|++.|+|+.. ..+++|..+
T Consensus 9 ~~~iL~~L~~---~~~~s~~ela~~lg--~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~ 67 (150)
T 2w25_A 9 DRILVRELAA---DGRATLSELATRAG--LSVSAVQSRVRRLESRGVVQGYSARINPEAVGHLL 67 (150)
T ss_dssp HHHHHHHHHH---CTTCCHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCE
T ss_pred HHHHHHHHHH---cCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEEEeccChhHcccce
Confidence 4444455543 24578899999998 9999999999999999999754 356688763
No 119
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=63.76 E-value=6.8 Score=32.84 Aligned_cols=48 Identities=23% Similarity=0.289 Sum_probs=37.6
Q ss_pred ceehhhhhhhhhhhhhhHH-HHHHHHHHHHHhccccccccccccceeeehhhhHHH
Q 042785 398 NYVTIAKLQKKLDKEANQS-TVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKK 452 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (604)
.=.|+..|...|. ++.. +||..+.+|+++|+|+..+..| + +-.||++.
T Consensus 24 g~~ta~eiA~~Lg--it~~~aVr~hL~~Le~eGlV~~~~~gR---P--~w~LT~~g 72 (79)
T 1xmk_A 24 SDSSALNLAKNIG--LTKARDINAVLIDMERQGDVYRQGTTP---P--IWHLTDKK 72 (79)
T ss_dssp CCEEHHHHHHHHC--GGGHHHHHHHHHHHHHTTSEEEECSSS---C--EEEECHHH
T ss_pred CCcCHHHHHHHcC--CCcHHHHHHHHHHHHHCCCEEecCCCC---C--CeEeCHhH
Confidence 4467888999998 8888 9999999999999999665443 4 44566543
No 120
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=63.63 E-value=7.7 Score=36.52 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=48.7
Q ss_pred ccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehh-hhHHHHHHHHHhhccc
Q 042785 396 SMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHST-LTKKKLMEAKKALDID 463 (604)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 463 (604)
|=+.++...|...|. +|.+.||.-+.+|+.+|+|+...++ |-.|..-+ -.=+.+.|++.+|+..
T Consensus 32 pG~~L~e~~La~~lg--VSRtpVREAL~~L~~eGlv~~~~~~--G~~V~~~~~~~~~el~e~R~~lE~~ 96 (218)
T 3sxy_A 32 LGEKLNVRELSEKLG--ISFTPVRDALLQLATEGLVKVVPRV--GFFVTDVDEKFIRETIETRIMMEVF 96 (218)
T ss_dssp TTCEECHHHHHHHHT--CCHHHHHHHHHHHHHHTSEEEETTT--EEEECCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEeCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEeCCC--ceEEcCCCHHHHHHHHHHHHHHHHH
Confidence 456678889999998 9999999999999999999987654 77776532 2234556666666653
No 121
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=63.57 E-value=4.4 Score=33.45 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=32.8
Q ss_pred cceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc
Q 042785 397 MNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG 435 (604)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (604)
-..++++.|...|. +++.+|++.+.+|++.|+|+...
T Consensus 41 ~~~~~~~eLa~~l~--is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 41 DKGRSEEEIMQTLS--LSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HTTCCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEEC
Confidence 35689999999997 99999999999999999998643
No 122
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=63.13 E-value=4.3 Score=34.51 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=31.7
Q ss_pred ehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc
Q 042785 400 VTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG 435 (604)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (604)
.++..|..+|. ++-.+|++.|.+|+++|+|...+
T Consensus 31 ~sa~eLAk~Lg--iSk~aVr~~L~~Le~eG~I~~~~ 64 (82)
T 1oyi_A 31 ATAAQLTRQLN--MEKREVNKALYDLQRSAMVYSSD 64 (82)
T ss_dssp EEHHHHHHHSS--SCHHHHHHHHHHHHHHTSSEECS
T ss_pred CCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEeCC
Confidence 89999999999 99999999999999999998753
No 123
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=62.71 E-value=5.3 Score=36.00 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=39.9
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHH
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKK 452 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (604)
.-.+++.|...|. +++.++++.+++|++.|||+......-+ ++ .-.||++-
T Consensus 36 g~~~~~eLa~~lg--is~~tls~~L~~Le~~GlI~r~~~~~d~-~~-~y~LT~~G 86 (146)
T 2f2e_A 36 GLTRFGEFQKSLG--LAKNILAARLRNLVEHGVMVAVPAESGS-HQ-EYRLTDKG 86 (146)
T ss_dssp TCCSHHHHHHHHC--CCHHHHHHHHHHHHHTTSEEEEECSSSS-CE-EEEECHHH
T ss_pred CCCCHHHHHHHhC--CCHHHHHHHHHHHHHCCCEEEEecCCCC-eE-EEEECchH
Confidence 4568899999995 9999999999999999999976654434 33 44578763
No 124
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=62.67 E-value=5 Score=34.63 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=36.5
Q ss_pred cccee-hhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeee
Q 042785 396 SMNYV-TIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIH 445 (604)
Q Consensus 396 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (604)
|-+.+ +...|...|. +|.++||+.+.+|+++|+|+... +.|-.|..
T Consensus 29 ~G~~lPs~~~La~~~~--vSr~tvr~al~~L~~~Gli~~~~--~~G~~V~~ 75 (113)
T 3tqn_A 29 EGEMIPSIRKISTEYQ--INPLTVSKAYQSLLDDNVIEKRR--GLGMLVKA 75 (113)
T ss_dssp TTCEECCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEET--TTEEEECT
T ss_pred CCCcCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEec--CCeEEEeC
Confidence 34555 8889999998 99999999999999999998653 33555543
No 125
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=61.76 E-value=7.7 Score=37.03 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=50.6
Q ss_pred cccee-hhhhhhhhhhhhhhHHHHHHHHHHHHHhccccc--cccccccceeeehhh----------------hHHHHHHH
Q 042785 396 SMNYV-TIAKLQKKLDKEANQSTVRKLIDKMIREGYVEA--KGSRRLGKRVIHSTL----------------TKKKLMEA 456 (604)
Q Consensus 396 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----------------~~~~~~~~ 456 (604)
|=+.+ +-..|..+|. +|.++||.-+.+++.+|+|+. ..++..|-.|.--.. .=+.+.|+
T Consensus 24 pG~~LpsE~~La~~lg--VSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~el~e~ 101 (239)
T 2di3_A 24 IGDHLPSERALSETLG--VSRSSLREALRVLEALGTISTATGSGPRSGTIITAAPGQALSLSVTLQLVTNQVGHHDIYET 101 (239)
T ss_dssp TTCBCCCHHHHHHHHT--CCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECCCCCSHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred CCCcCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeCCcchhHHHHHHHHHHhCCCCHHHHHHH
Confidence 33455 4668888888 999999999999999999999 555447888865433 23677888
Q ss_pred HHhhcccc
Q 042785 457 KKALDIDF 464 (604)
Q Consensus 457 ~~~~~~~~ 464 (604)
+.+|+...
T Consensus 102 R~~lE~~a 109 (239)
T 2di3_A 102 RQLLEGWA 109 (239)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887653
No 126
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=61.72 E-value=8.7 Score=35.45 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=52.9
Q ss_pred hhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc----cccccc--eeeehhhhHH------
Q 042785 384 DQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG----SRRLGK--RVIHSTLTKK------ 451 (604)
Q Consensus 384 ~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~------ 451 (604)
|.--+.+|..- .-++...|..+|. .+..+|++.+.+|++.|+|+.-. .+++|. ..+.-.++..
T Consensus 19 d~~IL~~L~~~---~~~s~~eLA~~lg--lS~~tv~~~l~~L~~~G~I~~~~~~~d~~~lG~~~a~v~v~~~~~~~~~f~ 93 (171)
T 2ia0_A 19 DRNILRLLKKD---ARLTISELSEQLK--KPESTIHFRIKKLQERGVIERYTIILGEQLKPKHLALIVLEVGKPVIEDFL 93 (171)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSEEEEEEEEESCC--CHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEeecccCCHHHhhcceEEEEEEECCccccccc
Confidence 44444555432 3578899999998 99999999999999999997432 456775 4555455544
Q ss_pred --HHHHHHHhhcc
Q 042785 452 --KLMEAKKALDI 462 (604)
Q Consensus 452 --~~~~~~~~~~~ 462 (604)
.+.++.+.|..
T Consensus 94 ~~~~~~~~~~l~~ 106 (171)
T 2ia0_A 94 ERYISYISSTLSA 106 (171)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHC
Confidence 77777777654
No 127
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=59.92 E-value=9 Score=32.98 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=47.9
Q ss_pred hHHHHHHh-hhhccc-eehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhcc
Q 042785 385 QIYMKALY-YALSMN-YVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALDI 462 (604)
Q Consensus 385 ~~y~~~~~-~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (604)
|+-+..|. +.-|+. |-.+..|...++-.++..++-.++.+|+++|||+... +.++++. .+|++=-.++++.+..
T Consensus 12 ~~IL~lL~~~~~~~~g~~i~~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~--~~~rk~Y--~iT~~Gr~~l~~~~~~ 87 (99)
T 2co5_A 12 YIILKVLVINGSRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEE--APDGKVL--FLTEKGMKEFEELHEF 87 (99)
T ss_dssp HHHHHHHHHTTTEEEGGGHHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEEC--CTTSCEE--EECHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEee--CCCcEEE--EECHHHHHHHHHHHHh
Confidence 34444443 333544 4445555555555789999999999999999999876 2244454 5677766666665543
No 128
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=59.47 E-value=4.9 Score=34.36 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=33.2
Q ss_pred cceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccc
Q 042785 397 MNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAK 434 (604)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (604)
-..|++..|...|+ ++..+||..+++|++.|+|+.-
T Consensus 14 ~g~vsv~eLA~~l~--VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 14 QGRMEAKQLSARLQ--TPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp SCSEEHHHHHHHTT--CCHHHHHHHHHHHHTTCCSEEE
T ss_pred cCCCcHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEE
Confidence 47899999999999 9999999999999999999753
No 129
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=58.82 E-value=7.9 Score=34.93 Aligned_cols=52 Identities=10% Similarity=0.124 Sum_probs=40.3
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHH
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKK 451 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (604)
.-.+.+.|...|.| +++.++++.+++|+++|+|+-.....- .|.+.-.||++
T Consensus 38 g~~rf~eL~~~l~g-Is~~~Ls~~L~~Le~~GLV~R~~~~~d-~r~v~y~LT~~ 89 (131)
T 4a5n_A 38 GKKRFNEFRRICPS-ITQRMLTLQLRELEADGIVHREVYHQV-PPKVEYSLTEF 89 (131)
T ss_dssp SCBCHHHHHHHCTT-SCHHHHHHHHHHHHHTTSEEEEEECSS-SCEEEEEECTT
T ss_pred CCcCHHHHHHHhcc-cCHHHHHHHHHHHHHCCCEEEEecCCC-CCeEEEEECHh
Confidence 55678889998843 999999999999999999997655433 34445568876
No 130
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=58.74 E-value=5.4 Score=33.14 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=33.0
Q ss_pred cceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccc
Q 042785 397 MNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAK 434 (604)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (604)
-..|++..|...|+ ++..+||.-+++|++.|+|+.-
T Consensus 14 ~g~vsv~eLa~~l~--VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 14 RGRMEAAQISQTLN--TPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp SCSBCHHHHHHHTT--CCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCcHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEe
Confidence 47899999999999 9999999999999999999653
No 131
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=58.34 E-value=11 Score=33.51 Aligned_cols=74 Identities=24% Similarity=0.314 Sum_probs=52.5
Q ss_pred hhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc----ccccccee---eehhhhH-HHHHH
Q 042785 384 DQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG----SRRLGKRV---IHSTLTK-KKLME 455 (604)
Q Consensus 384 ~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~-~~~~~ 455 (604)
|.--+.+|..- ..++...|..+|. .+..+|++.+.+|++.|+|+.-+ .+++|..+ |.-.+.. ..+.+
T Consensus 10 d~~il~~L~~~---~~~s~~ela~~lg--~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~~~~~~~~ 84 (152)
T 2cg4_A 10 DRGILEALMGN---ARTAYAELAKQFG--VSPETIHVRVEKMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAKDYPS 84 (152)
T ss_dssp HHHHHHHHHHC---TTSCHHHHHHHHT--SCHHHHHHHHHHHHHHTSEEEEEEEECTTTTTCCEEEEEEEEESSGGGHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHC--cCHHHHHHHHHHHHHcCCcceEEEecCHHHcCCeEEEEEEEEECCCCCHHH
Confidence 44445555432 4578899999998 99999999999999999999644 46789874 3333332 35677
Q ss_pred HHHhhcc
Q 042785 456 AKKALDI 462 (604)
Q Consensus 456 ~~~~~~~ 462 (604)
+.+.|..
T Consensus 85 ~~~~l~~ 91 (152)
T 2cg4_A 85 ALAKLES 91 (152)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 7766654
No 132
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=58.25 E-value=6.9 Score=33.43 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 413 ANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
++..++..++++|+++|||+......-|++...-.+|++=...+.+
T Consensus 38 i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~ 83 (108)
T 3l7w_A 38 IKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVY 83 (108)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHH
T ss_pred CCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHH
Confidence 8999999999999999999987543334433333467654444333
No 133
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=56.55 E-value=6.9 Score=36.20 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=48.9
Q ss_pred ccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhcc
Q 042785 396 SMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALDI 462 (604)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (604)
|-.++++..|...+. ++...++|++.+|.+.|||+....+.=|-+... ...+=.|.+|-.+++.
T Consensus 25 ~~~~~s~~~IA~~~~--is~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar-~p~~Itl~dIi~ave~ 88 (162)
T 3k69_A 25 RDSKVASRELAQSLH--LNPVMIRNILSVLHKHGYLTGTVGKNGGYQLDL-ALADMNLGDLYDLTIP 88 (162)
T ss_dssp TTSCBCHHHHHHHHT--SCGGGTHHHHHHHHHTTSSEEECSTTCEEECCS-CGGGSBHHHHHHHHSC
T ss_pred CCCCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEeecCCCCCeEecC-ChhhCcHHHHHHHHcc
Confidence 446899999999998 999999999999999999987654433333322 3455567788888874
No 134
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=56.43 E-value=13 Score=33.36 Aligned_cols=63 Identities=16% Similarity=0.325 Sum_probs=45.5
Q ss_pred ccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhcc
Q 042785 396 SMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALDI 462 (604)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (604)
+-..+++..|...+. ++...++|++.+|.+.|||+.... . |--+.-....+=.|.+|-.+++-
T Consensus 27 ~~~~~~~~~iA~~~~--i~~~~l~kil~~L~~~Glv~s~rG-~-GGy~L~~~p~~Itl~dVi~a~e~ 89 (149)
T 1ylf_A 27 PSSLCTSDYMAESVN--TNPVVIRKIMSYLKQAGFVYVNRG-P-GGAGLLKDLHEITLLDVYHAVNV 89 (149)
T ss_dssp CGGGCCHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEC-----CCEEESSCGGGCBHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCcEEEccC-C-CceEeCCChhhCcHHHHHHHHcc
Confidence 456799999999998 999999999999999999987422 2 22222222344457777777765
No 135
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=55.82 E-value=12 Score=33.60 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=52.0
Q ss_pred hhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccc----cccccccee---eehhhhHHH--HH
Q 042785 384 DQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAK----GSRRLGKRV---IHSTLTKKK--LM 454 (604)
Q Consensus 384 ~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~--~~ 454 (604)
|.--+.+|..-- .+++..|...|. .+..+|++.+.+|++.|+|+.- ..+++|..+ |.-.+...+ +.
T Consensus 12 ~~~il~~L~~~~---~~s~~ela~~lg--~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~~~~~ 86 (162)
T 2p5v_A 12 DIKILQVLQENG---RLTNVELSERVA--LSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDARE 86 (162)
T ss_dssp HHHHHHHHHHCT---TCCHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEECSSTTHHH
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEeeecccCChHHhcccEEEEEEEEEcCCchHHH
Confidence 554555555433 468889999998 8999999999999999999853 246788763 344444443 66
Q ss_pred HHHHhhcc
Q 042785 455 EAKKALDI 462 (604)
Q Consensus 455 ~~~~~~~~ 462 (604)
++.+.|..
T Consensus 87 ~~~~~l~~ 94 (162)
T 2p5v_A 87 DFAASVRK 94 (162)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 66666643
No 136
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=55.57 E-value=12 Score=36.05 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=48.9
Q ss_pred ccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhH-HHHHHHHHhhccc
Q 042785 396 SMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTK-KKLMEAKKALDID 463 (604)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 463 (604)
|=+.++...|...|. +|.+.||.-+.+|+.+|+|+...++ |-.|..-...+ +.+.|++.+|+..
T Consensus 48 pG~~L~e~~La~~lg--VSRtpVREAL~~L~~eGlv~~~~~~--G~~V~~~~~~~~~el~e~R~~LE~~ 112 (239)
T 2hs5_A 48 PGARLSEPDICAALD--VSRNTVREAFQILIEDRLVAHELNR--GVFVRVPTAEDITELYICRRVVECA 112 (239)
T ss_dssp TTCEECHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEETTT--EEEECCCCHHHHHHHHHHHHHHHHH
T ss_pred CcCEeCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEeCCC--eeEEeCCCHHHHHHHHHHHHHHHHH
Confidence 456678889999999 9999999999999999999976553 66666433221 4566777777764
No 137
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=54.94 E-value=9.9 Score=35.29 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=48.7
Q ss_pred CcchhHHHHHHhhhhcccee----hhhhhhhhhhh------------hhhHHHHHHHHHHHHHhccccccccccccceee
Q 042785 381 QLDDQIYMKALYYALSMNYV----TIAKLQKKLDK------------EANQSTVRKLIDKMIREGYVEAKGSRRLGKRVI 444 (604)
Q Consensus 381 ~~~~~~y~~~~~~~l~~~~~----~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (604)
.+.|..|..+ |..|.-.|+ -+..|...+.| .+|.++||+.+.+|+.+|||+... +.|-.|-
T Consensus 46 ~~~~~~y~ri-a~~lr~~i~~g~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~--~~G~~Vt 122 (150)
T 2v7f_A 46 EQEDWWYYRV-ASILRRVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVP--GKGRVIT 122 (150)
T ss_dssp HHHTHHHHHH-HHHHHHHHHHCSBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEET--TTEEEEC
T ss_pred CCcchHHHHH-HHHHHHHHHhCCCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeC--CCceEEC
Confidence 3446777655 444444443 24677777764 288999999999999999999753 3355553
Q ss_pred ehhhhHHHHHHHHHhh
Q 042785 445 HSTLTKKKLMEAKKAL 460 (604)
Q Consensus 445 ~~~~~~~~~~~~~~~~ 460 (604)
..+.+.|.++..-+
T Consensus 123 --~~~~~~l~~ia~~i 136 (150)
T 2v7f_A 123 --PKGRSFLDKIATEL 136 (150)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHH
Confidence 34556666654433
No 138
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=54.51 E-value=9.6 Score=30.42 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=31.7
Q ss_pred ceehhhhhhhhhhh---hhhHHHHHHHHHHHHHhccccc
Q 042785 398 NYVTIAKLQKKLDK---EANQSTVRKLIDKMIREGYVEA 433 (604)
Q Consensus 398 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 433 (604)
.++++..|...|.. .++..+|...++.|++.|+|..
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 58999999999943 4899999999999999999974
No 139
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=54.40 E-value=2.6 Score=35.39 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=36.1
Q ss_pred ccee-hhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeee
Q 042785 397 MNYV-TIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIH 445 (604)
Q Consensus 397 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (604)
-+.+ ++..|...|. +|+++||+.+.+|+++|||+... +.|..|..
T Consensus 32 g~~lps~~eLa~~~~--vSr~tvr~al~~L~~~Gli~~~~--g~G~~v~~ 77 (102)
T 1v4r_A 32 GDTLPSVADIRAQFG--VAAKTVSRALAVLKSEGLVSSRG--ALGTVVEK 77 (102)
T ss_dssp TSBCCCHHHHHHHSS--SCTTHHHHHTTTTTTSSCCEEET--TTEEESCS
T ss_pred cCCCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEeC--CCeEEEcc
Confidence 3445 8999999998 99999999999999999997543 34666553
No 140
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=54.23 E-value=13 Score=35.17 Aligned_cols=46 Identities=13% Similarity=0.381 Sum_probs=36.8
Q ss_pred cccee-hhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeee
Q 042785 396 SMNYV-TIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIH 445 (604)
Q Consensus 396 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (604)
|=+.+ +-..|..+|. +|.++||+-|.+|+.+|+|+...++ |-.|..
T Consensus 27 pG~~LPsE~eLa~~~g--VSR~tVReAL~~L~~eGlv~~~~g~--G~~V~~ 73 (239)
T 1hw1_A 27 PGTILPAERELSELIG--VTRTTLREVLQRLARDGWLTIQHGK--PTKVNN 73 (239)
T ss_dssp TTSBCCCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEETTE--EEEECC
T ss_pred CCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCcEEEecCC--CcEeeC
Confidence 33455 6778888888 9999999999999999999976543 666753
No 141
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=54.10 E-value=17 Score=33.96 Aligned_cols=70 Identities=11% Similarity=0.170 Sum_probs=51.4
Q ss_pred HHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccc----ccccccceeeehhhhHHHHHHHHH
Q 042785 386 IYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAK----GSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 386 ~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
++-..|-| |..+.+++.|...+ |-+++.+|+.-++.|+..|+|+.. +.++-|.+--+-.||+.-..-++.
T Consensus 34 IL~~Ll~~--p~~~~ta~eL~~~l-~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~~ 107 (151)
T 3u1d_A 34 VLHQILAQ--PDGVLSVEELLYRN-PDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLRA 107 (151)
T ss_dssp HHHHHHHS--TTSCBCHHHHHHHC-TTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHHH
T ss_pred HHHHHHcC--CCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHHH
Confidence 33334444 67788999987654 558999999999999999999853 456667777777788765555443
No 142
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=53.81 E-value=14 Score=34.07 Aligned_cols=75 Identities=20% Similarity=0.211 Sum_probs=55.2
Q ss_pred chhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc----cccccce---eeehhhhHHHHHH
Q 042785 383 DDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG----SRRLGKR---VIHSTLTKKKLME 455 (604)
Q Consensus 383 ~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~ 455 (604)
-|.--+.+|..- .-+++..|...|. .++.+|+..+.+|++.|+|+.-+ .+++|.. .|.-.+....+.+
T Consensus 28 ~d~~IL~~L~~~---~~~s~~eLA~~lg--lS~~tv~~rl~~L~~~G~I~~~~a~vd~~~~G~~~~a~v~v~~~~~~~~~ 102 (171)
T 2e1c_A 28 IDKKIIKILQND---GKAPLREISKITG--LAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSE 102 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHT--SCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEECTTCHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCeEeeeEEECHHHcCCCEEEEEEEEECcchHHH
Confidence 355555555542 3478888888888 99999999999999999998643 4678875 3444555677778
Q ss_pred HHHhhcc
Q 042785 456 AKKALDI 462 (604)
Q Consensus 456 ~~~~~~~ 462 (604)
+.+.|..
T Consensus 103 v~~~l~~ 109 (171)
T 2e1c_A 103 VASNLAK 109 (171)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 8777764
No 143
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=53.67 E-value=14 Score=33.30 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=56.9
Q ss_pred CCcchhHHHHHHhhhhc--cceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccc-cceeeehhhhH--HHHH
Q 042785 380 PQLDDQIYMKALYYALS--MNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRL-GKRVIHSTLTK--KKLM 454 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~ 454 (604)
....+++++=-|+..-. ..+.|...|...+. .+...|.++|++|++.|||+-...+.. |++.-.=++|. .||.
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~--~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~ekL~ 107 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTPNQLQEGMS--ISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWGKLY 107 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSS--SCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHHHHH
Confidence 44557776666555433 56789999999999 899999999999999999998644333 88887777765 5555
Q ss_pred HHH
Q 042785 455 EAK 457 (604)
Q Consensus 455 ~~~ 457 (604)
++-
T Consensus 108 ~~~ 110 (135)
T 2v79_A 108 EYI 110 (135)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 144
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=53.62 E-value=7.2 Score=34.25 Aligned_cols=45 Identities=27% Similarity=0.455 Sum_probs=36.3
Q ss_pred cee-hhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeeh
Q 042785 398 NYV-TIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHS 446 (604)
Q Consensus 398 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (604)
+.+ +...|...|. +|.++||+.+.+|+++|||+.... .|-.|-..
T Consensus 35 ~~Lps~~~La~~~~--vSr~tvr~Al~~L~~~G~i~~~~g--~G~~V~~~ 80 (125)
T 3neu_A 35 DKLPSVREMGVKLA--VNPNTVSRAYQELERAGYIYAKRG--MGSFVTSD 80 (125)
T ss_dssp CBCCCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEETT--TEEEECCC
T ss_pred CCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCeEEEecC--CEEEEecC
Confidence 344 6888999998 999999999999999999987644 36666553
No 145
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=53.48 E-value=8.3 Score=31.98 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=31.6
Q ss_pred eehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc
Q 042785 399 YVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG 435 (604)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (604)
.+|+..|...|+ +|.++||+-+..|++.|||+-..
T Consensus 24 ~psv~EIa~~lg--vS~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 24 PVKTRDIADAAG--LSIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp CEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEES
T ss_pred CcCHHHHHHHHC--CCHHHHHHHHHHHHHCCcEEecC
Confidence 479999999998 79999999999999999998764
No 146
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=50.71 E-value=16 Score=35.29 Aligned_cols=63 Identities=11% Similarity=0.099 Sum_probs=46.8
Q ss_pred ccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhh-HHHHHHHHHhhcc
Q 042785 396 SMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLT-KKKLMEAKKALDI 462 (604)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 462 (604)
|=+.++...|...|. +|.++||.-+.+|+.+|+|+...+ .|-.|..-... -..+.+++..|+.
T Consensus 46 pG~~L~e~~La~~lg--VSr~~VReAL~~L~~~Glv~~~~~--~G~~V~~~~~~~~~~~~~~R~~le~ 109 (237)
T 3c7j_A 46 SGTALRQQELATLFG--VSRMPVREALRQLEAQSLLRVETH--KGAVVAPLITEDAVDAYALRILLES 109 (237)
T ss_dssp TTCBCCHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEETT--TEEEECCCHHHHHHHHHHHHHHHHH
T ss_pred CcCeeCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEeCC--CceEEecCCHHHHHHHHHHHHHHHH
Confidence 556778999999998 999999999999999999997643 36555543221 1345666666665
No 147
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=50.18 E-value=5.6 Score=35.07 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=41.0
Q ss_pred cccee-hhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHH
Q 042785 396 SMNYV-TIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAK 457 (604)
Q Consensus 396 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (604)
|=+.+ +...|...|. +|.++||+.+.+|+++|||+... +.|-.|- ..+...+.++.
T Consensus 31 ~G~~lPs~~~La~~~~--vSr~tvr~Al~~L~~~G~i~~~~--~~G~~V~--~~~~~~~~~~~ 87 (126)
T 3ic7_A 31 EEGRIPSVREYASIVE--VNANTVMRSYEYLQSQEVIYNKR--GIGFFVA--SGAKMLIHSLR 87 (126)
T ss_dssp BTSEECCTTTTTTCC---CCSGGGHHHHHHHHTTTSEEEET--TTEEEEC--TTHHHHHHHHH
T ss_pred CCCcCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCcEEEEc--CCccEEc--cCcHHHHHHHH
Confidence 44556 8889999998 99999999999999999998654 3455553 34455555544
No 148
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=49.55 E-value=23 Score=33.48 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=49.6
Q ss_pred ccCCCCCcchhHHHHH---Hhhhhccceehhhhhhhhhhhh------------hhHHHHHHHHHHHHHhcccccccc--c
Q 042785 375 LCDKSPQLDDQIYMKA---LYYALSMNYVTIAKLQKKLDKE------------ANQSTVRKLIDKMIREGYVEAKGS--R 437 (604)
Q Consensus 375 ~~~~~~~~~~~~y~~~---~~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~--~ 437 (604)
-...++++.|+.|..| |.|.-=---|-|..|....-|- ++-+.+|+++.+++.-|+|+.... -
T Consensus 46 ~KElaP~d~DW~YiRaASi~R~lYlrg~vGV~~lrk~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~g~Vek~~~g~~ 125 (155)
T 2xzm_T 46 ARELAPQDSDWVYIRTAALARKVYLKPHTGISTLKHIFGSNKDRGNLRNKHQACHGKILRWALKSLEDLKIIRKDKNSAT 125 (155)
T ss_dssp SCSSCCSSTTHHHHHHHHHHHHHHHSTTCCHHHHHHHTCCEECCSSSCCEECCCCHHHHHHHHHHHHHTTSEEECSSCSS
T ss_pred cccCCCCCCchHHHHHHHHHHHHhccCCCCHHHHHHHHCCCCCCCCCCCcccCCCcHHHHHHHHHHHHCCCEeecCCCCc
Confidence 4567888899999987 2222222346677777776663 788999999999999999996321 1
Q ss_pred cccceeeeh
Q 042785 438 RLGKRVIHS 446 (604)
Q Consensus 438 ~~~~~~~~~ 446 (604)
..|-|+|-+
T Consensus 126 ~k~GR~lT~ 134 (155)
T 2xzm_T 126 KKFSRVITK 134 (155)
T ss_dssp STTCEEECH
T ss_pred CCCCCEECH
Confidence 233566654
No 149
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=47.03 E-value=16 Score=32.84 Aligned_cols=63 Identities=6% Similarity=0.139 Sum_probs=46.8
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhccc
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALDID 463 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (604)
..+++..|...+. ++...++|++.+|.+.|||+....+.=|-+.- ....+=.|.+|-.+++-+
T Consensus 27 ~~~s~~~IA~~~~--i~~~~l~kil~~L~~aGlv~s~rG~~GGy~La-r~p~~Itl~dV~~aveg~ 89 (143)
T 3t8r_A 27 GCISLKSIAEENN--LSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLR-VPAEEISAGDIIRLLEGP 89 (143)
T ss_dssp CCEEHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEECSSSSSEEEES-SCGGGCBHHHHHHHHHCC
T ss_pred CCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCEEEecCCCCCCeeec-CCcccCCHHHHHHHhCCC
Confidence 4799999999999 99999999999999999999764443333322 233444577777777654
No 150
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=46.43 E-value=23 Score=33.26 Aligned_cols=61 Identities=15% Similarity=0.302 Sum_probs=45.3
Q ss_pred ccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHH---HHHHhhcc
Q 042785 396 SMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLM---EAKKALDI 462 (604)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 462 (604)
|=+.+....|...|. +|.+.||.-+.+|+.+|+|+...++ |-.|.. ++...+. +++.+|+.
T Consensus 36 pG~~L~E~~La~~lg--VSRtpVREAl~~L~~eGlv~~~~~~--G~~V~~--~~~~~~~e~~~~R~~lE~ 99 (222)
T 3ihu_A 36 PGQRLVETDLVAHFG--VGRNSVREALQRLAAEGIVDLQRHR--GAVIRR--LSLQETLDVLDVAERMTG 99 (222)
T ss_dssp TTCEECHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEECSTT--CEEECC--CCHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEecCC--CeEEec--CCHHHHHHHHHHHHHHHH
Confidence 456777888999998 9999999999999999999987553 777754 3444444 44444443
No 151
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=44.25 E-value=18 Score=31.33 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHHHHhccccccccc-cccceeeehhhhHHHHHHHHHh
Q 042785 412 EANQSTVRKLIDKMIREGYVEAKGSR-RLGKRVIHSTLTKKKLMEAKKA 459 (604)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 459 (604)
.++..++..++++|+++|||+..-.. --|++...-.+|++=...+.+.
T Consensus 44 ~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~ 92 (116)
T 3f8b_A 44 ELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLA 92 (116)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHH
Confidence 68999999999999999999976321 1222222224666544444433
No 152
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=43.16 E-value=18 Score=34.18 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=40.2
Q ss_pred hhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccc
Q 042785 384 DQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGK 441 (604)
Q Consensus 384 ~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (604)
|.--+.+|.+ .-++++.|...|. .++.+|++.+++|++.|+|+..+..+.|.
T Consensus 22 ~~~IL~~L~~----~~~s~~eLA~~lg--lS~stv~~~l~~Le~~GlI~~~~~~~~~~ 73 (192)
T 1uly_A 22 RRKILKLLRN----KEMTISQLSEILG--KTPQTIYHHIEKLKEAGLVEVKRTEMKGN 73 (192)
T ss_dssp HHHHHHHHTT----CCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEEEEEETT
T ss_pred HHHHHHHHHc----CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEEecccccc
Confidence 4444555553 4579999999997 99999999999999999998875434443
No 153
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=41.90 E-value=17 Score=35.88 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=41.7
Q ss_pred CCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccc
Q 042785 380 PQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAK 434 (604)
Q Consensus 380 ~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (604)
....++..+.+|... .-++++.|...|. .++++|.+++++|++.|||+..
T Consensus 150 L~~~~~~IL~~L~~~---~~~s~~eLA~~lg--lsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 150 YSREEMKLLNVLYET---KGTGITELAKMLD--KSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp CCHHHHHHHHHHHHH---TCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHc---CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEe
Confidence 455577777776542 4589999999999 9999999999999999999976
No 154
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=41.85 E-value=21 Score=33.37 Aligned_cols=50 Identities=20% Similarity=0.249 Sum_probs=39.6
Q ss_pred hhHHHHHHhhhhcc-ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc
Q 042785 384 DQIYMKALYYALSM-NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG 435 (604)
Q Consensus 384 ~~~y~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (604)
.-+|=|-+-.+--| .+||..-|..+|- ++-+-+|++|..|+..|+|+.-+
T Consensus 47 k~tydKL~KEVpk~gKlITpsvlseRlk--I~gSLARkaLreL~~kGlIk~V~ 97 (143)
T 2xzm_8 47 KKNVESIINNPSKVGKVLTVSTVVEKLK--VNGSLARQLMRTMADRKLVEKVA 97 (143)
T ss_dssp HHHHHHHHTCCTTSCSEECHHHHHHHHC--BCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhcccceeecHHHHHHHhc--chHHHHHHHHHHHHHCCCEEEEe
Confidence 33444433344446 7999999999999 99999999999999999997643
No 155
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=41.75 E-value=17 Score=32.51 Aligned_cols=62 Identities=19% Similarity=0.342 Sum_probs=46.7
Q ss_pred hhhhhcCccccCCCCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc
Q 042785 366 VKEEMDGVTLCDKSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG 435 (604)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (604)
++|...+.|..+ .-+|=|-+--+--+.+||.+-|..+|- ++-+-+|++|..|...|+|+.-+
T Consensus 32 ~kdK~nn~VlfD------k~t~dkl~KEVpk~KlITpsvlseRlk--I~gSLAR~aLreL~~kGlIk~V~ 93 (108)
T 3u5c_Z 32 MKDRAQHAVILD------QEKYDRILKEVPTYRYVSVSVLVDRLK--IGGSLARIALRHLEKEGIIKPIS 93 (108)
T ss_dssp ----CCSCSSCT------THHHHHHHHHCSSCSSBSHHHHHHTTC--CCTTHHHHHHHHHSSSSSCEEEE
T ss_pred HHHHhhcceeeC------HHHHHHHHHHccCCeEEeHHHhhhhhh--hhHHHHHHHHHHHHHCCCEEEEe
Confidence 455555555443 445656555667789999999999999 99999999999999999998654
No 156
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=41.42 E-value=14 Score=33.96 Aligned_cols=69 Identities=19% Similarity=0.318 Sum_probs=52.8
Q ss_pred hhHHHHHHhhhhccceehhhhhhhhhhh------h-----hhHHHHHHHHHHHHHhcccccc----------ccccccce
Q 042785 384 DQIYMKALYYALSMNYVTIAKLQKKLDK------E-----ANQSTVRKLIDKMIREGYVEAK----------GSRRLGKR 442 (604)
Q Consensus 384 ~~~y~~~~~~~l~~~~~~~~~~~~~~~~------~-----~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 442 (604)
...|-+||++ |...--|...|..+|.. + .....+-.+|++|++.|||... .++..|++
T Consensus 5 ~~a~~~Al~~-Ls~r~~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~G~~ 83 (159)
T 3c1d_A 5 ARLLDRAVRI-LAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGPA 83 (159)
T ss_dssp HHHHHHHHHH-HTTSCCCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHH-hhcccccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCccHH
Confidence 4567778655 66677788888888875 3 7889999999999999998643 23458999
Q ss_pred eeehhhhHHHH
Q 042785 443 VIHSTLTKKKL 453 (604)
Q Consensus 443 ~~~~~~~~~~~ 453 (604)
.|-.+|-.|-+
T Consensus 84 ~I~~eL~~KGI 94 (159)
T 3c1d_A 84 RIRQELNQKGI 94 (159)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 99888877665
No 157
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=41.29 E-value=19 Score=31.40 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=41.3
Q ss_pred ccceehhh-hhhhhhhhhhhHHHHHHHHHHHHHhcccccccc---ccccceeeehhhhHHHHHHHHHhhc
Q 042785 396 SMNYVTIA-KLQKKLDKEANQSTVRKLIDKMIREGYVEAKGS---RRLGKRVIHSTLTKKKLMEAKKALD 461 (604)
Q Consensus 396 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (604)
||...-+. .|.....+.++..++..++.+|+++|||+.... .+..+++. .+|++=..++.+.++
T Consensus 27 p~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y--~lT~~G~~~l~~~~~ 94 (117)
T 3elk_A 27 PMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVY--HITDAGKKFLCDHSQ 94 (117)
T ss_dssp CEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEE--EECHHHHHHHHHTST
T ss_pred CCCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEE--EECHHHHHHHHHHHH
Confidence 55433333 344444566889999999999999999987643 22234444 477776666665544
No 158
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=40.02 E-value=25 Score=36.51 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=37.1
Q ss_pred cceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeeh
Q 042785 397 MNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHS 446 (604)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (604)
-.++++..+...++ ++..+|++.+.+|+..|+|+..+..|- +.-++.
T Consensus 309 ~p~~t~~~~~~~~g--vS~~Ta~r~L~~L~e~GiL~~~~~gR~-~~y~~~ 355 (373)
T 2qc0_A 309 QPYCRIQNLVESGL--AKRQTASVYLKQLCDIGVLEEVQSGKE-KLFVHP 355 (373)
T ss_dssp CSEEEHHHHHHTSS--SCHHHHHHHHHHHHHTTSCEEC--CCS-CEEECH
T ss_pred CCcccHHHHHHHhC--CCHHHHHHHHHHHHHCCcEEEecCCCc-eEEehH
Confidence 45889999999888 999999999999999999998875443 444443
No 159
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=39.50 E-value=25 Score=36.71 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=37.5
Q ss_pred ccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeeh
Q 042785 396 SMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHS 446 (604)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (604)
..-++++..+...+. ++..++++.+.+|+..|+|+..+.+| ++.-++.
T Consensus 308 ~~p~~t~~~~~~~~~--~S~~TA~r~L~~L~e~GiL~~~~~gR-~~~y~~~ 355 (373)
T 3eqx_A 308 EQPYCRIQNLVESGL--AKRQTASVYLKQLCDIGVLEEVQSGK-EKLFVHP 355 (373)
T ss_dssp HCSEEEHHHHHHTSS--SCHHHHHHHHHHHHHTTSCEEC--CC-SCEEECH
T ss_pred HCCCccHHHHHHHhC--cCHHHHHHHHHHHHHCCcEEEeCCCC-ceEeehH
Confidence 346889999988886 88999999999999999999877654 4555554
No 160
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=39.31 E-value=7 Score=43.33 Aligned_cols=107 Identities=15% Similarity=0.112 Sum_probs=0.0
Q ss_pred hhhhhccCCChhh--------------------hhh-----cccccccCCCcceeeccccchhhhhhhhhhhcCccccCC
Q 042785 324 LTDVLSNFPDISV--------------------LVK-----EGLLSKGGKDTYTINKQEKFNYEFALVKEEMDGVTLCDK 378 (604)
Q Consensus 324 ~~dvl~~~p~i~~--------------------l~~-----~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (604)
+...|...|.|+. |.+ .|+|.+.| .+|.++..- +............--+
T Consensus 435 iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~g-~~y~L~~~~-----~~~~~~~~~~~~~~~~ 508 (583)
T 3lmm_A 435 VLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHD-GVWLLGNAC-----REILRKVEPSPFSPVR 508 (583)
T ss_dssp HHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEET-TEEEECHHH-----HHHHTSCC--------
T ss_pred HHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEeC-CEEEECHHH-----HHHhcccccccccccc
Q ss_pred CCCcchhHHHHHHhhhhccc-eehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccccccc
Q 042785 379 SPQLDDQIYMKALYYALSMN-YVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRR 438 (604)
Q Consensus 379 ~~~~~~~~y~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (604)
-...+..-|-+.++-.|.-. .+|...++..+. .+...|+++|++|+++|.|+.-|..|
T Consensus 509 ~~~~~~~~~~~~I~~~l~~~g~it~~di~~l~~--ls~~qa~~~L~~Lv~~G~l~~~G~gr 567 (583)
T 3lmm_A 509 YLSTDQAELTNAAMLWLSEVGDLATSDLMAMCG--VSRGTAKACVDGLVDEERVVAVGGGR 567 (583)
T ss_dssp -------------------------------------------------------------
T ss_pred cccCChhHHHHHHHHHHHHcCCcCHHHHHHHHC--CCHHHHHHHHHHHHHCCcEEEeCCCC
No 161
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=36.52 E-value=35 Score=30.93 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=42.9
Q ss_pred hhHHHHHHhhhhccceehhhh-hhhhhhh--hhhHHHHHHHHHHHHHhcccccccccc-ccceeeehhhhHHHHHHHHHh
Q 042785 384 DQIYMKALYYALSMNYVTIAK-LQKKLDK--EANQSTVRKLIDKMIREGYVEAKGSRR-LGKRVIHSTLTKKKLMEAKKA 459 (604)
Q Consensus 384 ~~~y~~~~~~~l~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 459 (604)
.+.-+.+|+. =||...-+.+ |.....| .++..++..++++|+++|||+...... -|++...-.||++=...+.+.
T Consensus 43 ~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~ 121 (145)
T 1xma_A 43 DTIILSLLIE-GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQK 121 (145)
T ss_dssp HHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHHHH
Confidence 5555566654 3544333332 2222222 489999999999999999998764321 122222236787654444443
Q ss_pred h
Q 042785 460 L 460 (604)
Q Consensus 460 ~ 460 (604)
+
T Consensus 122 ~ 122 (145)
T 1xma_A 122 C 122 (145)
T ss_dssp H
T ss_pred H
Confidence 3
No 162
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=36.10 E-value=23 Score=34.29 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=35.4
Q ss_pred cee-hhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeee
Q 042785 398 NYV-TIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIH 445 (604)
Q Consensus 398 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (604)
+.+ +...|...+. +|.++||+.+..|+++|+|+.. ++.|-.|..
T Consensus 32 ~~lPse~~La~~~~--vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 76 (243)
T 2wv0_A 32 MPLPSEREYAEQFG--ISRMTVRQALSNLVNEGLLYRL--KGRGTFVSK 76 (243)
T ss_dssp CBCCCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEC--TTSCEEECC
T ss_pred CCCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCcEEEe--CCCeEEEeC
Confidence 445 7788888898 9999999999999999999854 334666654
No 163
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=35.96 E-value=31 Score=31.72 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHhcccccccccc---ccceeeehhhhHHHHHHHHHhhcc
Q 042785 412 EANQSTVRKLIDKMIREGYVEAKGSRR---LGKRVIHSTLTKKKLMEAKKALDI 462 (604)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 462 (604)
.++..++...+++|+++|+|+...... ..|++. .+|++=..++.+.+..
T Consensus 34 ~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y--~lT~~G~~~l~~~~~~ 85 (179)
T 1yg2_A 34 KASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVY--SITQAGRSALGEWFDQ 85 (179)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEECCC---------CE--EECHHHHHHHHHHHHS
T ss_pred CCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEE--EeChHHHHHHHHHHhC
Confidence 488999999999999999999765432 234444 6898888888877663
No 164
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=35.89 E-value=20 Score=35.96 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=31.9
Q ss_pred cceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccc
Q 042785 397 MNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVE 432 (604)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (604)
..-+++..|..+|. +|..+||+.++++.++|+|+
T Consensus 19 ~~~~~~~ela~~l~--vS~~tIrRdL~~l~~~G~v~ 52 (315)
T 2w48_A 19 EQDMTQAQIARELG--IYRTTISRLLKRGREQGIVT 52 (315)
T ss_dssp TSCCCHHHHHHHTT--CCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCcEE
Confidence 36699999999999 99999999999999999997
No 165
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=35.11 E-value=14 Score=35.61 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=37.8
Q ss_pred eehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccc--ccccccceeee
Q 042785 399 YVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAK--GSRRLGKRVIH 445 (604)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 445 (604)
-++++.|...|. .+.++|.+++..|++.|||+.. +.=|||.+++.
T Consensus 23 ~~~~~ela~~~g--l~~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~~~~ 69 (249)
T 1mkm_A 23 DVSVSEIAEKFN--MSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIE 69 (249)
T ss_dssp CBCHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEECTTSCEEECTHHHH
T ss_pred CCCHHHHHHHHC--cCHHHHHHHHHHHHHCCcEEECCCCcEEECHHHHH
Confidence 478999999998 9999999999999999999875 33467777653
No 166
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=34.49 E-value=19 Score=35.24 Aligned_cols=46 Identities=24% Similarity=0.456 Sum_probs=39.0
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc-cccccceeee
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG-SRRLGKRVIH 445 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 445 (604)
.-++++.|...+. .+.++|..++..|++.|||+..+ .-|||-+++.
T Consensus 35 ~~~~~~eia~~~g--l~~stv~r~l~tL~~~G~v~~~~~~Y~Lg~~~~~ 81 (265)
T 2ia2_A 35 QRRTLSDVARATD--LTRATARRFLLTLVELGYVATDGSAFWLTPRVLE 81 (265)
T ss_dssp SSEEHHHHHHHHT--CCHHHHHHHHHHHHHHTSEEESSSEEEECGGGGG
T ss_pred CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEecCCEEEEcHHHHH
Confidence 4588999999998 99999999999999999998754 3378887765
No 167
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=34.18 E-value=17 Score=35.43 Aligned_cols=45 Identities=27% Similarity=0.454 Sum_probs=38.0
Q ss_pred eehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc-cccccceeee
Q 042785 399 YVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG-SRRLGKRVIH 445 (604)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 445 (604)
-++++.|...+. .+.++|..++..|++.|||+..+ .-|||.+++.
T Consensus 29 ~~~~~eia~~~g--l~~stv~r~l~~L~~~G~v~~~~~~Y~Lg~~~~~ 74 (257)
T 2g7u_A 29 NPTLAELATEAG--LSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLS 74 (257)
T ss_dssp SCBHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEETTEEEECGGGHH
T ss_pred CCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEeCCCEEEEcHHHHH
Confidence 478999999998 99999999999999999998653 3468877653
No 168
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=34.08 E-value=29 Score=30.16 Aligned_cols=48 Identities=6% Similarity=-0.006 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHHHhcccccccccc--ccceeeehhhhHHHHHHHHHh
Q 042785 412 EANQSTVRKLIDKMIREGYVEAKGSRR--LGKRVIHSTLTKKKLMEAKKA 459 (604)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 459 (604)
.++..++..++.+|+++|||+...... -|.+--.=.+|++=...+.+.
T Consensus 53 ~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~ 102 (115)
T 2dql_A 53 RLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDL 102 (115)
T ss_dssp ECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHH
Confidence 589999999999999999998764321 232222234666544444433
No 169
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=33.85 E-value=33 Score=29.54 Aligned_cols=48 Identities=6% Similarity=0.169 Sum_probs=32.2
Q ss_pred hhH-HHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhh
Q 042785 413 ANQ-STVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKAL 460 (604)
Q Consensus 413 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (604)
++. .++..++++|+++|||+......-|.+...-.+|++=...+.+.+
T Consensus 46 is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~~~ 94 (118)
T 2esh_A 46 IGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREIL 94 (118)
T ss_dssp CCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHHHH
Confidence 789 999999999999999987653222322222367776555444433
No 170
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=33.05 E-value=15 Score=35.48 Aligned_cols=46 Identities=28% Similarity=0.355 Sum_probs=38.6
Q ss_pred eehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc---cccccceeeeh
Q 042785 399 YVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG---SRRLGKRVIHS 446 (604)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 446 (604)
-++++.|...+. .+.++|..++..|++.|||+... .=|||.+++.-
T Consensus 21 ~~s~~ela~~~g--l~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 21 GLSLAAIAQLVG--LPRSTVQRIINALEEEFLVEALGPAGGFRLGPALGQL 69 (241)
T ss_dssp CEEHHHHHHHTT--SCHHHHHHHHHHHHTTTSEEECGGGCEEEECSHHHHH
T ss_pred CCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEeCCCCeEEECHHHHHH
Confidence 478999999998 89999999999999999998653 34678777653
No 171
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=32.79 E-value=24 Score=34.12 Aligned_cols=45 Identities=24% Similarity=0.391 Sum_probs=34.6
Q ss_pred cee-hhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeeh
Q 042785 398 NYV-TIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHS 446 (604)
Q Consensus 398 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (604)
+.+ +...|..++. +|..+||+.+..++++|||+.... .|-.|...
T Consensus 31 ~~lPse~~La~~~~--vSr~tvr~Al~~L~~~G~i~~~~g--~G~~V~~~ 76 (236)
T 3edp_A 31 MLMPNETALQEIYS--SSRTTIRRAVDLLVEEGLVVRKNG--VGLYVQPK 76 (236)
T ss_dssp C--CCHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEETT--TEEEECCC
T ss_pred CCCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEECC--ceEEEccC
Confidence 444 6777888888 999999999999999999987543 36666554
No 172
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=32.78 E-value=35 Score=31.57 Aligned_cols=63 Identities=11% Similarity=0.156 Sum_probs=46.9
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhccc
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALDID 463 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (604)
..+++..|...+. ++...++|++.+|.+.|+|+....+.=|=+. =-...+=.|.+|=.+++-+
T Consensus 43 ~~~s~~eIA~~~~--i~~~~l~kil~~L~~aGlv~s~rG~~GGy~L-ar~p~eItL~dVi~avEg~ 105 (159)
T 3lwf_A 43 GPISLRSIAQDKN--LSEHYLEQLIGPLRNAGIVKSIRGAHGGYVL-NGDPEKITAGDIIRTLEGP 105 (159)
T ss_dssp CCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEECSTTCEEEE-CSCTTTCBHHHHHHHHSCC
T ss_pred CCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCeEEEecCCCCceEe-cCCHHHCCHHHHHHHHcCC
Confidence 4689999999998 9999999999999999999976544333222 2234455677777777653
No 173
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=32.09 E-value=34 Score=32.67 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=36.6
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccc--cccceeeeh
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSR--RLGKRVIHS 446 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 446 (604)
.-.+++.|...|. +++.+|+..+.+|++.|+|+..... +-|++++.+
T Consensus 27 ~~~s~~eLa~~l~--is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~ 75 (202)
T 2p4w_A 27 RPYFVSELSRELG--VGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYM 75 (202)
T ss_dssp SCEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEE
T ss_pred CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEE
Confidence 5578899999996 9999999999999999999874432 225555544
No 174
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=31.62 E-value=27 Score=34.00 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=35.6
Q ss_pred cee-hhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeeh
Q 042785 398 NYV-TIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHS 446 (604)
Q Consensus 398 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (604)
+.+ +...|..++. +|.++||+.+..|+++|||.. ++.|-.|...
T Consensus 34 ~~lPse~~La~~~~--vSr~tvr~Al~~L~~~G~i~~---~g~Gt~V~~~ 78 (248)
T 3f8m_A 34 DPFPAEREIAEQFE--VARETVRQALRELLIDGRVER---RGRTTVVARP 78 (248)
T ss_dssp CBCCCHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEE---ETTEEEECCC
T ss_pred CcCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEe---CCCEEEEccC
Confidence 445 7788888888 999999999999999999987 4456666543
No 175
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=30.73 E-value=27 Score=34.53 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=33.6
Q ss_pred cee-hhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeee
Q 042785 398 NYV-TIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIH 445 (604)
Q Consensus 398 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (604)
+-+ +...|..++. +|.++||+.+..|+++|||+.... .|-.|..
T Consensus 51 ~~lPse~~La~~~~--vSr~tvr~Al~~L~~~G~i~~~~g--~G~~V~~ 95 (272)
T 3eet_A 51 TRLPSQARIREEYG--VSDTVALEARKVLMAEGLVEGRSG--SGTYVRE 95 (272)
T ss_dssp SBCCCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEECCC----EEECC
T ss_pred CCCcCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEecC--ceEEEec
Confidence 344 7778888888 999999999999999999976543 3555543
No 176
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=30.60 E-value=34 Score=30.59 Aligned_cols=62 Identities=24% Similarity=0.295 Sum_probs=47.5
Q ss_pred hhhhhcCccccCCCCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc
Q 042785 366 VKEEMDGVTLCDKSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG 435 (604)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (604)
++|...+.|..| .-+|=|-+--+--|.+||.+-|..+|- ++-+-+|++|..|...|+|+.-+
T Consensus 33 ~kdk~nn~Vl~D------k~t~dkl~KEVpk~KlITpsvlseRlk--I~gSLAR~aLreL~~kGlIk~V~ 94 (108)
T 3iz6_V 33 QKEKVNNSVLFD------KATYDKLLSEVPKYKQITPSVLSERLR--INGSLARQAIKDLESRGAIRVVS 94 (108)
T ss_dssp CSHHHHSHHHHS------SHHHHHHHHHHHHHSSEEEHHHHHHHH--TCCHHHHHHHHHHHHHHTSCEEC
T ss_pred HHHHhcCcEeEC------HHHHHHHHHHccCCeEEeHHHHHhhhc--ccHHHHHHHHHHHHHCCCEEEEe
Confidence 445555544443 234555555566789999999999999 99999999999999999998654
No 177
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=29.99 E-value=45 Score=29.28 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=42.5
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhcc
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALDI 462 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (604)
.-.|++.|...++=..++.+|++-+.+|++.|+|+.. |.. .-.||++-..-+.+-++.
T Consensus 26 g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~-----~rg--~Y~LT~~G~~~l~~~~d~ 83 (111)
T 3b73_A 26 GNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL-----ANG--VYVITEEGEAYLNGEYDA 83 (111)
T ss_dssp SCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC-----STT--CEEECHHHHHHHTTCEET
T ss_pred CCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec-----CCc--eEEECchHHHHHHHHHHH
Confidence 4678888988883128999999999999999999974 333 455787775555544444
No 178
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=29.85 E-value=21 Score=34.90 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=40.4
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccccc---ccccceeeeh
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGS---RRLGKRVIHS 446 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 446 (604)
.-++++.|...++ .+.++|..|+..|++.|||+.... =|||-+++.-
T Consensus 20 ~~lsl~eia~~lg--l~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~~~~l 69 (260)
T 3r4k_A 20 LEIGLSDLTRLSG--MNKATVYRLMSELQEAGFVEQVEGARSYRLGPQVLRL 69 (260)
T ss_dssp SEEEHHHHHHHHC--SCHHHHHHHHHHHHHTTSEEECSSSSEEEECTTHHHH
T ss_pred CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEcCCCCcEEcCHHHHHH
Confidence 4578999999999 999999999999999999987543 3899888753
No 179
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=29.13 E-value=52 Score=27.69 Aligned_cols=35 Identities=6% Similarity=0.139 Sum_probs=32.3
Q ss_pred ehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccccc
Q 042785 400 VTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGS 436 (604)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (604)
++.+.|...+. .+-..+++.++.|++.|||+-..+
T Consensus 21 ~~~t~La~~~~--ls~~~~~~~l~~L~~~GLI~~~~~ 55 (95)
T 1r7j_A 21 SPKTRIMYGAN--LSYALTGRYIKMLMDLEIIRQEGK 55 (95)
T ss_dssp BCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCHHHHHHHhC--cCHHHHHHHHHHHHHCCCeEEECC
Confidence 89999999999 999999999999999999997643
No 180
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=28.58 E-value=32 Score=33.18 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=34.0
Q ss_pred cee-hhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceee
Q 042785 398 NYV-TIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVI 444 (604)
Q Consensus 398 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (604)
+-+ +...|..++. +|.++||+.+..|+++|+|+... +.|-.|.
T Consensus 27 ~~lPse~~La~~~~--vSr~tvr~Al~~L~~~g~i~~~~--g~G~~V~ 70 (239)
T 3bwg_A 27 DKLPVLETLMAQFE--VSKSTITKSLELLEQKGAIFQVR--GSGIFVR 70 (239)
T ss_dssp CBCCCHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEET--TTEEEEC
T ss_pred CCCcCHHHHHHHHC--CCHHHHHHHHHHHHHCCcEEEeC--CceEEEe
Confidence 445 7788888998 99999999999999999998543 3354443
No 181
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=28.26 E-value=47 Score=29.35 Aligned_cols=43 Identities=12% Similarity=0.273 Sum_probs=38.0
Q ss_pred HHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccc
Q 042785 388 MKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVE 432 (604)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (604)
|=++|+.=|-.|+|++.....|.|. -.++.++..=+++-|+|-
T Consensus 56 iI~~yr~nP~~yLT~t~~r~~l~gD--v~~i~RVh~FLe~wGLIN 98 (104)
T 2fq3_A 56 MVNSYRLNPNEYFSVTTARRNVSGD--AAALFRLHKFLTKWGLIN 98 (104)
T ss_dssp HHHHHHHCTTSCCCHHHHHHHSCSC--HHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHhCCceeeeHHHHHHHcccc--HHHHHHHHHHHHHcCeec
Confidence 3478999999999999999999985 568899999999999985
No 182
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=27.87 E-value=62 Score=30.23 Aligned_cols=60 Identities=25% Similarity=0.251 Sum_probs=43.1
Q ss_pred ccCCCCCcch-hHHHHH---Hhhhhccceehhhhhhhhhhhh------------hhHHHHHHHHHHHHHhcccccc
Q 042785 375 LCDKSPQLDD-QIYMKA---LYYALSMNYVTIAKLQKKLDKE------------ANQSTVRKLIDKMIREGYVEAK 434 (604)
Q Consensus 375 ~~~~~~~~~~-~~y~~~---~~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 434 (604)
-...++++.| +.|..| |.|.-=---|.|..|....-|- +|-+.+|+++.+++.-|+|+..
T Consensus 42 ~kEl~P~d~D~W~Y~RaASi~R~lYl~g~vGV~~lrk~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~g~vek~ 117 (144)
T 3u5c_T 42 GNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEIS 117 (144)
T ss_dssp TCSSCCSSCSSSHHHHHHHHHHHHHTSSBCCHHHHHHHHCCEEEETTEEEEECCCCHHHHHHHHHHHHHTTSEECC
T ss_pred cccCCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHCCCCCCCCCCccccccCcHHHHHHHHHHHHCCCeeec
Confidence 4567788889 999876 2222112346777777666553 6679999999999999999964
No 183
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.11 E-value=66 Score=27.82 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=43.8
Q ss_pred CCCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccccc
Q 042785 378 KSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGS 436 (604)
Q Consensus 378 ~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (604)
+....++++-|+.+.++=.+ =++...|..++. ..|..+.+++.+|+..|||+.-.+
T Consensus 33 ~~Lt~~E~lVy~~I~~aGn~-GIw~kdL~~~tn--L~~~~vtkiLK~LE~k~lIK~Vks 88 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIEDAGNK-GIWSRDVRYKSN--LPLTEINKILKNLESKKLIKAVKS 88 (95)
T ss_dssp CSCSHHHHHHHHHHHHHTTS-CEEHHHHHHHHT--CCHHHHHHHHHHHHHHTSEEEECC
T ss_pred cCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHhC--CCHHHHHHHHHHHHhCCCEEEecC
Confidence 34456788888888775442 367788888888 889999999999999999986543
No 184
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=26.57 E-value=38 Score=34.61 Aligned_cols=45 Identities=22% Similarity=0.462 Sum_probs=37.5
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcc-ccccccccccceeeeh
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGY-VEAKGSRRLGKRVIHS 446 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 446 (604)
.|++...|..+|. +|.++|+|-|.++.++|| |+...+ .|-|+...
T Consensus 18 ~~~Sg~eLa~~lg--vSr~aV~k~i~~L~~~G~~i~~~~~--~GY~L~~~ 63 (323)
T 3rkx_A 18 NYISGQSIAESLN--ISRTAVKKVIDQLKLEGCKIDSVNH--KGHLLQQL 63 (323)
T ss_dssp SCBCHHHHHHHHT--SCHHHHHHHHHHHHHTTCEEEEETT--TEEEEEEC
T ss_pred CccCHHHHHHHHC--CCHHHHHHHHHHHHhcCCeEEEeCC--CeEEEecC
Confidence 5899999999999 999999999999999999 443322 37777763
No 185
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=26.53 E-value=14 Score=37.73 Aligned_cols=45 Identities=11% Similarity=0.246 Sum_probs=0.0
Q ss_pred hhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccc
Q 042785 384 DQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEA 433 (604)
Q Consensus 384 ~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (604)
.+..+..||+. .-++...|..+|. .+..+||+++++|++.|||+-
T Consensus 22 ~~~iL~~l~~~---~~~t~~eLa~~l~--vs~~Tv~r~l~~Le~~Glv~~ 66 (345)
T 2o0m_A 22 RFQILRNIYWM---QPIGRRSLSETMG--ITERVLRTETDVLKQLNLIEP 66 (345)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEE
Confidence 45566667663 5789999999999 999999999999999999973
No 186
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=26.03 E-value=52 Score=28.48 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=40.9
Q ss_pred hhHHHHHHhhhhccceehhhhhhhhhhh--hhhHHHHHHHHHHHHHhccccccccc---cccceeeehhhhHHHHHHHHH
Q 042785 384 DQIYMKALYYALSMNYVTIAKLQKKLDK--EANQSTVRKLIDKMIREGYVEAKGSR---RLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 384 ~~~y~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 458 (604)
+++=+..|.. =||.-.-+.+.-.. .| .++..++..++.+|+++|||+..-.. +..+++. .+|++=...+.+
T Consensus 11 ~~~IL~~L~~-~~~~Gyei~~~l~~-~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y--~LT~~G~~~l~~ 86 (115)
T 4esb_A 11 EGCILYIISQ-EEVYGYELSTKLNK-HGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYY--HITDKGLEQLEE 86 (115)
T ss_dssp HHHHHHHHHH-SCEEHHHHHHHHHH-TTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEE--EECHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHH-cCCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEE--EECHHHHHHHHH
Confidence 3344444442 35544444333222 23 48999999999999999999876432 2223444 366654444443
Q ss_pred h
Q 042785 459 A 459 (604)
Q Consensus 459 ~ 459 (604)
.
T Consensus 87 ~ 87 (115)
T 4esb_A 87 F 87 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 187
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=26.01 E-value=51 Score=29.72 Aligned_cols=74 Identities=16% Similarity=0.260 Sum_probs=50.5
Q ss_pred hhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccc----cccccccee---eehhhhH---HHH
Q 042785 384 DQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAK----GSRRLGKRV---IHSTLTK---KKL 453 (604)
Q Consensus 384 ~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~---~~~ 453 (604)
|.--+++|-.-- -++...|..+|. .+..+|++.|.+|+++|+|+.- ..+++|..+ |.-.+.. ..+
T Consensus 5 d~~il~~L~~~~---~~s~~~la~~lg--~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v~~~~~~~~ 79 (162)
T 3i4p_A 5 DRKILRILQEDS---TLAVADLAKKVG--LSTTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTASHSIEWL 79 (162)
T ss_dssp HHHHHHHHTTCS---CSCHHHHHHHHT--CCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECCSCCHHHH
T ss_pred HHHHHHHHHHCC---CCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEEcCCChHHH
Confidence 333344444433 458888999998 9999999999999999999843 346788753 4444433 346
Q ss_pred HHHHHhhcc
Q 042785 454 MEAKKALDI 462 (604)
Q Consensus 454 ~~~~~~~~~ 462 (604)
.++.+.|..
T Consensus 80 ~~~~~~l~~ 88 (162)
T 3i4p_A 80 KRFSEVVSE 88 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666654
No 188
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=25.58 E-value=86 Score=28.95 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=35.3
Q ss_pred HHhhhhcc--ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcc-ccc
Q 042785 390 ALYYALSM--NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGY-VEA 433 (604)
Q Consensus 390 ~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 433 (604)
.+...|.- .++|+..|..+|. ++..+|++-|.+|.+.|+ |+.
T Consensus 25 ~Il~~L~~~~~~~s~~eLa~~l~--vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 25 SIVRILERSKEPVSGAQLAEELS--VSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHT--SCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHcCCCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCeEEE
Confidence 34455543 4799999999998 999999999999999999 864
No 189
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=24.35 E-value=68 Score=28.51 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=42.7
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHHhhcc
Q 042785 401 TIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALDI 462 (604)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (604)
++..|...+. ++..-++|++.+|.+.|||+.... .-|- ..=-...+=.|.+|=.+++-
T Consensus 25 s~~~IA~~~~--i~~~~l~kIl~~L~~aGlv~s~rG-~GGy-~Lar~p~~Itl~dVi~aveg 82 (145)
T 1xd7_A 25 SSEIIADSVN--TNPVVVRRMISLLKKADILTSRAG-VPGA-SLKKDPADISLLEVYRAVQK 82 (145)
T ss_dssp CHHHHHHHHT--SCHHHHHHHHHHHHHTTSEECCSS-SSSC-EESSCGGGCBHHHHHHHHCC
T ss_pred CHHHHHHHHC--cCHHHHHHHHHHHHHCCceEeecC-CCCc-eecCCHHHCCHHHHHHHHcC
Confidence 8888999998 999999999999999999987533 2222 22223444557777777764
No 190
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=24.03 E-value=45 Score=33.25 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhhccC---CCcchhhhhhccCC--------Chhh---hhhcccccccCCCcceeeccccchhhhhhhhhh
Q 042785 304 EQQLVRVKDWINCRH---LHSVELTDVLSNFP--------DISV---LVKEGLLSKGGKDTYTINKQEKFNYEFALVKEE 369 (604)
Q Consensus 304 e~~~~~v~~w~~~~~---~~~~~~~dvl~~~p--------~i~~---l~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 369 (604)
-|+..+|-++|..-+ =+-+.++||..++. .|+- |-.=..|..-| .+|.|.+.... . ++...
T Consensus 74 ~eLavqIvEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~L~~LG-~g~~v~~~~g~--~--~VqSv 148 (234)
T 3cuq_A 74 YELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALG-TGFGIIPVGGT--Y--LIQSV 148 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHHGGGB-TTCEEEEETTE--E--EEECS
T ss_pred HHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHHHHhcC-CCeEEEEECCE--E--EEEeC
Confidence 366777777776633 36677777766652 2222 22223344444 35666553311 0 11111
Q ss_pred hcCccccCCCCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccc
Q 042785 370 MDGVTLCDKSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVE 432 (604)
Q Consensus 370 ~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (604)
...-+.|..=.-.+. -..-|||+.-|...|. .+..-++..++.|+++|++=
T Consensus 149 --------p~el~~D~~~vLela--~~~g~vt~~~L~~~l~--W~~~Ra~~~L~~l~~~Gllw 199 (234)
T 3cuq_A 149 --------PAELNMDHTVVLQLA--EKNGYVTVSEIKASLK--WETERARQVLEHLLKEGLAW 199 (234)
T ss_dssp --------CCCCCHHHHHHHHHH--TTTSEECHHHHHHHHT--CCHHHHHHHHHHHHHHTSCE
T ss_pred --------CCccchHHHHHHHHH--HhcCcCcHHHHHHHhC--CCHHHHHHHHHHHHhCCCEE
Confidence 111223444332222 3478999999999998 78888899999999999863
No 191
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=23.61 E-value=76 Score=28.38 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=36.2
Q ss_pred ehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceeeehhhhHHHHHHHHH
Q 042785 400 VTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458 (604)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (604)
+|-..|...|- ++..+|.+++.+|.++|+|+-.+ |+=+|.. ..+|.++-.
T Consensus 164 ~t~~~lA~~lg--~sr~tvsR~l~~l~~~g~I~~~~----~~i~i~d---~~~L~~~a~ 213 (216)
T 4ev0_A 164 IRHHELAALAG--TSRETVSRVLHALAEEGVVRLGP----GTVEVRE---AALLEEIAF 213 (216)
T ss_dssp CCHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEET----TEEEESC---HHHHHHHHT
T ss_pred CCHHHHHHHhC--CCHHHHHHHHHHHHHCCCEEecC----CEEEEeC---HHHHHHHhh
Confidence 46667777777 89999999999999999997532 4445554 455555443
No 192
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.71 E-value=45 Score=31.21 Aligned_cols=60 Identities=13% Similarity=0.226 Sum_probs=43.1
Q ss_pred ccCCCCCcchhHHHHH---Hhhhhccceehhhhhhhhhhh------------hhhHHHHHHHHHHHHHhcccccc
Q 042785 375 LCDKSPQLDDQIYMKA---LYYALSMNYVTIAKLQKKLDK------------EANQSTVRKLIDKMIREGYVEAK 434 (604)
Q Consensus 375 ~~~~~~~~~~~~y~~~---~~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 434 (604)
-...++++.|+.|..| |.|.-=---|.|..|....-| .++-+.+|+++.+++.-|+||..
T Consensus 45 ~KEl~P~d~DW~Y~RaASi~R~lYlrg~vGV~~lrk~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~g~Vek~ 119 (146)
T 3iz6_S 45 FKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVD 119 (146)
T ss_dssp SCSSSTHHHHTHHHHHHHHHHHHHHHCSBCHHHHHSSSCCCCCCCSSCCCCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cccCCCCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHCCCCCCCCCCCcccCCCcHHHHHHHHHHHHCCCeEec
Confidence 4567788889999876 122111234667777766554 46779999999999999999965
No 193
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=21.97 E-value=2.3e+02 Score=27.61 Aligned_cols=111 Identities=21% Similarity=0.282 Sum_probs=76.4
Q ss_pred ChhhHHHHHHHHHhhhccCCCcchhhhhhccCC-Chh-------hhhhcccccccCCCcceeeccccchhhhhhhhhhhc
Q 042785 300 PEEDEQQLVRVKDWINCRHLHSVELTDVLSNFP-DIS-------VLVKEGLLSKGGKDTYTINKQEKFNYEFALVKEEMD 371 (604)
Q Consensus 300 ~~~~e~~~~~v~~w~~~~~~~~~~~~dvl~~~p-~i~-------~l~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (604)
+...+....+|..++.......-.+.|+..... +-. .|+++|.+.+..+|-|.-...-. +++. .
T Consensus 136 ~~~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~~~~~~~~~~-----~~~~-~-- 207 (258)
T 1lva_A 136 SETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYWHRQALG-----EARE-V-- 207 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEEEHHHHH-----HHHH-H--
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCCeEEcHHHHH-----HHHH-H--
Confidence 445567788999999777766667777776544 222 18999999998887775433220 0111 0
Q ss_pred CccccCCCCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccc
Q 042785 372 GVTLCDKSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRL 439 (604)
Q Consensus 372 ~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (604)
+++ |. .-..+|++-+...|. .+---+=-|++.|-+.|+....|++|.
T Consensus 208 ----------------l~~--~~-~~~~it~a~~Rd~lg--~SRK~aIplLE~~Dr~g~TrR~gd~Rv 254 (258)
T 1lva_A 208 ----------------IKN--LA-STGPFGLAEARDALG--SSRKYVLPLLEYLDQVKFTRRVGDKRV 254 (258)
T ss_dssp ----------------HHH--HH-TTSCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred ----------------HHH--HH-hcCCcCHHHHHHHhC--CcHHHHHHHHHHHhhcCceeeeCCEEe
Confidence 111 11 337899999999997 666666689999999999999998774
No 194
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=21.59 E-value=30 Score=34.02 Aligned_cols=51 Identities=20% Similarity=0.220 Sum_probs=34.9
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccc--ccccccceeeehhhhH
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAK--GSRRLGKRVIHSTLTK 450 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 450 (604)
.-.+++.|...|. .++.+|++.+..|++.|+|+.. ..+.-|.+-+.-.+|.
T Consensus 24 g~~s~~ELa~~lg--lS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~ 76 (232)
T 2qlz_A 24 MECYFSLLSSKVS--VSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISI 76 (232)
T ss_dssp TTTCSSSSCTTCC--CCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECC
T ss_pred CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEcc
Confidence 3467888888896 9999999999999999999972 2233454444443443
No 195
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=21.48 E-value=79 Score=26.42 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=40.1
Q ss_pred ccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccccccccceee
Q 042785 396 SMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVI 444 (604)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (604)
|..-|++..|...|+ .+...|-+++.+|+.+|-+.++=++-.|-=++
T Consensus 27 ~Y~~Isl~~La~ll~--ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f 73 (84)
T 1ufm_A 27 LYNNITFEELGALLE--IPAAKAEKIASQMITEGRMNGFIDQIDGIVHF 73 (84)
T ss_dssp SCSEEEHHHHHHHTT--SCHHHHHHHHHHHHHTTSSCEEEETTTTEEEE
T ss_pred hcCeeeHHHHHHHHC--cCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEe
Confidence 457899999999999 89999999999999999999887776664333
No 196
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=21.47 E-value=88 Score=26.21 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=38.9
Q ss_pred HHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccccc
Q 042785 386 IYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGS 436 (604)
Q Consensus 386 ~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (604)
+-.+|+-|.=|-++.|+--|..+|- .+-..|.+++-+|.+.|||.-..+
T Consensus 16 ~v~~~i~~L~~~~~~Ta~~IAkkLg--~sK~~vNr~LY~L~kkG~V~~~~~ 64 (75)
T 1sfu_A 16 LVKKEVLSLNTNDYTTAISLSNRLK--INKKKINQQLYKLQKEDTVKMVPS 64 (75)
T ss_dssp HHHHHHHTSCTTCEECHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHC--CCHHHHHHHHHHHHHCCCEecCCC
Confidence 3456777644445599999999998 888889999999999999965544
No 197
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=20.22 E-value=1.4e+02 Score=29.68 Aligned_cols=111 Identities=11% Similarity=0.138 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhhccC---CCcchhhhhhccCC---Chhh---hhhcccccccCCCcceeeccccchhhhhhhhhhhcCcc
Q 042785 304 EQQLVRVKDWINCRH---LHSVELTDVLSNFP---DISV---LVKEGLLSKGGKDTYTINKQEKFNYEFALVKEEMDGVT 374 (604)
Q Consensus 304 e~~~~~v~~w~~~~~---~~~~~~~dvl~~~p---~i~~---l~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (604)
-|+..+|-+||..-+ =+-+.++||..++. .|+- |-.=..|..- .+|.+-..... .++...
T Consensus 93 ~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi~rAik~L~~L--~gf~v~~v~g~----~~vqsv----- 161 (233)
T 1u5t_A 93 YEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDMLKSL--ECFEIFQIRGK----KFLRSV----- 161 (233)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHHHHHHHHHTTT--CCCCEEEETTE----EEECCS-----
T ss_pred HHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHHHHHHHHhhhc--cCeEEEEECCE----EEEEeC-----
Confidence 367788888887644 37788888888875 3333 1111111111 23433221100 011100
Q ss_pred ccCCCCCcchhHHHHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccc
Q 042785 375 LCDKSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVE 432 (604)
Q Consensus 375 ~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (604)
...-+.|..=.-. -+-.+-|||+.-|...|. .+..-++..++.|+++|++=
T Consensus 162 ---p~el~~D~~~vLe--~a~~~g~vt~~~L~~~lg--W~~~Ra~~~L~~l~~~G~lw 212 (233)
T 1u5t_A 162 ---PNELTSDQTKILE--ICSILGYSSISLLKANLG--WEAVRSKSALDEMVANGLLW 212 (233)
T ss_dssp ---SSCCCTTHHHHHH--TTTTTSCCBHHHHHHHHC--CCSHHHHHHHHHHHHTTSSE
T ss_pred ---CCccchHHHHHHH--HHHhcCcCcHHHHHHHhC--CCHHHHHHHHHHHHHCCCEE
Confidence 0011223332222 223468999999999998 77788899999999999863
No 198
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=20.16 E-value=35 Score=33.23 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=38.2
Q ss_pred ceehhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccc--cccccceeee
Q 042785 398 NYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKG--SRRLGKRVIH 445 (604)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 445 (604)
.-++++.|...+. .+.++|..++..|++.|||+... .-+||-++++
T Consensus 37 ~~~~~~eia~~~g--l~kstv~r~l~tL~~~G~v~~~~~~~Y~lg~~~~~ 84 (260)
T 2o0y_A 37 PTRSLKELVEGTK--LPKTTVVRLVATMCARSVLTSRADGSYSLGPEMLR 84 (260)
T ss_dssp SSBCHHHHHHHHC--CCHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHH
T ss_pred CCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEECCCCeEEecHHHHH
Confidence 3578999999998 99999999999999999998654 3467777653
No 199
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=20.10 E-value=50 Score=33.67 Aligned_cols=51 Identities=18% Similarity=0.342 Sum_probs=36.9
Q ss_pred HHHHhhhhccceehhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccccc--ccccceee
Q 042785 388 MKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGS--RRLGKRVI 444 (604)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 444 (604)
++.|+ . .-+|-+.|...+. .+..+|++++++|+++|+|+..+. .+-|+|-+
T Consensus 26 l~~l~-~---~~~sr~~la~~~g--ls~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~ 78 (380)
T 2hoe_A 26 LKRIM-K---SPVSRVELAEELG--LTKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTK 78 (380)
T ss_dssp HHHHH-H---SCBCHHHHHHHHT--CCHHHHHHHHHHHHHHTSEEEEECCC----CCCE
T ss_pred HHHHH-c---CCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEeecCCCCCCCCCce
Confidence 45565 3 4468888888888 999999999999999999987542 23355443
Done!