BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042788
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EIX|A Chain A, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
pdb|2EIX|B Chain B, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
Length = 243
Score = 212 bits (539), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 146/215 (67%), Gaps = 2/215 (0%)
Query: 44 KSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEV 103
K +L+P +K+F L ++ I+HNT FRF L ++GLP+GQH+ + +G E+
Sbjct: 1 KREPALNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKAT-VDGKEI 59
Query: 104 IRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAF 163
RPYTP++ D + GYF+L++K+Y KG+M+ + ++ G++L V+GPKG+ YK +
Sbjct: 60 YRPYTPVSSDDEKGYFDLIIKVYEKGQMSQYIDHLNPGDFLQVRGPKGQFDYKPNMVKEM 119
Query: 164 GMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKV 223
GMIAGGTGITPM Q+ RAI++NPK+KT ++LI+ANV DILL+ ELD A N FKV
Sbjct: 120 GMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANVNEDDILLRTELDDMAKKYSN-FKV 178
Query: 224 YYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDIQ 258
YYVL+ P W GG+G VS +MI+ H P+ DI+
Sbjct: 179 YYVLNNPPAGWTGGVGFVSADMIKQHFSPPSSDIK 213
>pdb|1UMK|A Chain A, The Structure Of Human Erythrocyte Nadh-Cytochrome B5
Reductase
Length = 275
Score = 177 bits (449), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 131/222 (59%), Gaps = 26/222 (11%)
Query: 57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDI 116
+L R ISH+T +FRFALP ILGLPVGQHI + +GN V+RPYTPI+ D D
Sbjct: 19 LRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSAR-IDGNLVVRPYTPISSDDDK 77
Query: 117 GYFELVVKMY-----PK----GRMAHHFREMHEGEYLPVKGPKGRLKYK----------- 156
G+ +LV+K+Y PK G+M+ + M G+ + +GP G L Y+
Sbjct: 78 GFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDK 137
Query: 157 -----VGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD 211
+ ++ GMIAGGTGITPM Q+ RAI+++P D T HL++AN T DILL+ EL+
Sbjct: 138 KSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELE 197
Query: 212 SFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTP 253
RFK++Y L + E W+ G G V++EMI+ H P P
Sbjct: 198 ELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPP 239
>pdb|1NDH|A Chain A, Crystal Structure Of Nadh-Cytochrome B5 Reductase From Pig
Liver At 2.4 Angstroms Resolution
Length = 272
Score = 170 bits (431), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 130/222 (58%), Gaps = 26/222 (11%)
Query: 57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDI 116
+L + ++H+T +FRFALP ILGLPVGQHI + +GN VIRPYTP++ D D
Sbjct: 16 LRLIDKEVVNHDTRRFRFALPSPEHILGLPVGQHIYLSAR-IDGNLVIRPYTPVSSDDDK 74
Query: 117 GYFELVVKMY-----PK----GRMAHHFREMHEGEYLPVKGPKGRLKYK----------- 156
G+ +LV+K+Y PK G+M+ + M G+ + +GP G L Y+
Sbjct: 75 GFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDK 134
Query: 157 -----VGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD 211
+ ++ GMIAGGTGITPM Q+ RAI+++P D T HL++AN T DILL+ EL+
Sbjct: 135 KSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELE 194
Query: 212 SFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTP 253
RFK++Y + + E W+ G V++EMI+ H P P
Sbjct: 195 ELRNEHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLPPP 236
>pdb|1IB0|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad And Nad
pdb|1I7P|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad
Length = 274
Score = 167 bits (423), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 132/223 (59%), Gaps = 26/223 (11%)
Query: 57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDI 116
+L + +SH+T +FRFALP ILGLP+GQHI + +GN VIRPYTP++ D D
Sbjct: 18 LRLIDKEILSHDTRRFRFALPSPQHILGLPIGQHIYLSTR-IDGNLVIRPYTPVSSDDDK 76
Query: 117 GYFELVVKMY-----PK----GRMAHHFREMHEGEYLPVKGPKGRLKYK----------- 156
G+ +LVVK+Y PK G+M+ + M+ G+ + +GP G L Y+
Sbjct: 77 GFVDLVVKVYFKETHPKFPAGGKMSQYLENMNIGDTIEFRGPNGLLVYQGKGKFAIRADK 136
Query: 157 -----VGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD 211
V ++ GMIAGGTGITPM Q+ RA+L++P D T +L++AN + DILL+ EL+
Sbjct: 137 KSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQSEKDILLRPELE 196
Query: 212 SFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPA 254
+RFK++Y + + + W+ G V++EMI+ H P P
Sbjct: 197 ELRNEHSSRFKLWYTVDKAPDAWDYSQGFVNEEMIRDHLPPPG 239
>pdb|1QX4|A Chain A, Structrue Of S127p Mutant Of Cytochrome B5 Reductase
pdb|1QX4|B Chain B, Structrue Of S127p Mutant Of Cytochrome B5 Reductase
Length = 274
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 131/223 (58%), Gaps = 26/223 (11%)
Query: 57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDI 116
+L + +SH+T +FRFALP ILGLP+GQHI + +GN VIRPYTP++ D D
Sbjct: 18 LRLIDKEILSHDTRRFRFALPSPQHILGLPIGQHIYLSTR-IDGNLVIRPYTPVSSDDDK 76
Query: 117 GYFELVVKMY-----PK----GRMAHHFREMHEGEYLPVKGPKGRLKYK----------- 156
G+ +LVVK+Y PK G+M + M+ G+ + +GP G L Y+
Sbjct: 77 GFVDLVVKVYFKETHPKFPAGGKMPQYLENMNIGDTIEFRGPNGLLVYQGKGKFAIRADK 136
Query: 157 -----VGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD 211
V ++ GMIAGGTGITPM Q+ RA+L++P D T +L++AN + DILL+ EL+
Sbjct: 137 KSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQSEKDILLRPELE 196
Query: 212 SFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPA 254
+RFK++Y + + + W+ G V++EMI+ H P P
Sbjct: 197 ELRNEHSSRFKLWYTVDKAPDAWDYSQGFVNEEMIRDHLPPPG 239
>pdb|1CNE|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined
Structure Of The Cytochrome B Reductase Fragment At 2.5
Angstroms, Its Adp Complex And An Active Site Mutant And
Modeling Of The Cytochrome B Domain
Length = 270
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 130/230 (56%), Gaps = 24/230 (10%)
Query: 50 DPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTP 109
+P +L + +S + FRF+LP +LGLP+G+HI EG +R YTP
Sbjct: 8 NPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCAT-IEGKLCMRAYTP 66
Query: 110 ITLDSDIGYFELVVKMY-----PK----GRMAHHFREMHEGEYLPVKGPKGRLKY----- 155
++ +IG+F+L+VK+Y PK G M + + G Y+ VKGP G ++Y
Sbjct: 67 TSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGS 126
Query: 156 -----KVGQARAFGMIAGGTGITPMFQLTRAIL-ENPKDKTNVHLIYANVTVGDILLKDE 209
K AR MI GG+GITPM+Q+ +A+L + P+D T +HL+YAN T DILL+DE
Sbjct: 127 FVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDE 186
Query: 210 LDSFATNSPNRFKVYYVLSQ---PTEVWNGGIGHVSKEMIQMHCPTPAPD 256
LD +A P+R KV+YV+ Q P E W +G V++ +++ H P D
Sbjct: 187 LDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDD 236
>pdb|1CNF|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined
Structure Of The Cytochrome B Reductase Fragment At 2.5
Angstroms, Its Adp Complex And An Active Site Mutant And
Modeling Of The Cytochrome B Domain
pdb|2CND|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined
Structure Of The Cytochrome B Reductase Fragment At 2.5
Angstroms, Its Adp Complex And An Active Site Mutant And
Modeling Of The Cytochrome B Domain
Length = 270
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 129/230 (56%), Gaps = 24/230 (10%)
Query: 50 DPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTP 109
+P +L + +S + FRF+LP +LGLP+G+HI EG +R YTP
Sbjct: 8 NPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCAT-IEGKLCMRAYTP 66
Query: 110 ITLDSDIGYFELVVKMYPK---------GRMAHHFREMHEGEYLPVKGPKGRLKY----- 155
++ +IG+F+L+VK+Y K G M + + G Y+ VKGP G ++Y
Sbjct: 67 TSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGS 126
Query: 156 -----KVGQARAFGMIAGGTGITPMFQLTRAIL-ENPKDKTNVHLIYANVTVGDILLKDE 209
K AR MI GG+GITPM+Q+ +A+L + P+D T +HL+YAN T DILL+DE
Sbjct: 127 FVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDE 186
Query: 210 LDSFATNSPNRFKVYYVLSQ---PTEVWNGGIGHVSKEMIQMHCPTPAPD 256
LD +A P+R KV+YV+ Q P E W +G V++ +++ H P D
Sbjct: 187 LDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDD 236
>pdb|1TVC|A Chain A, Fad And Nadh Binding Domain Of Methane Monooxygenase
Reductase From Methylococcus Capsulatus (Bath)
Length = 250
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 100 GNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR-EMHEGEYLPVKGPKGRLKYKVG 158
G +V R Y+P L + G E ++++ P+GR + + R + G+ L VKGP G K
Sbjct: 56 GTDVSRSYSPANLPNPEGRLEFLIRVLPEGRFSDYLRNDARVGQVLSVKGPLGVFGLKER 115
Query: 159 QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANV-TVGDILLKDELDSFATNS 217
+AGGTG+ P+ + R + E N IY V T ++ DEL S +
Sbjct: 116 GMAPRYFVAGGTGLAPVVSMVRQMQE--WTAPNETRIYFGVNTEPELFYIDELKSLERSM 173
Query: 218 PNRFKVYYVLSQPTEVWNGGIGH 240
N V + P+ W G G
Sbjct: 174 RN-LTVKACVWHPSGDWEGEQGS 195
>pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase
pdb|2B5O|B Chain B, Ferredoxin-nadp Reductase
Length = 402
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 165 MIAGGTGITP----MFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNR 220
M+A GTGI P ++++ + E+ K K LI+ +IL KD+ + A +P+
Sbjct: 255 MLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDN 314
Query: 221 FKVYYVLSQPTEVWNGG 237
F++ Y +S+ + +GG
Sbjct: 315 FRLTYAISREQKTADGG 331
>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase
pdb|1KRH|B Chain B, X-Ray Stucture Of Benzoate Dioxygenase Reductase
Length = 338
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 121 LVVKMYPKGRMAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLT 179
VV+ P+G+M+ + + G+ + GP G Y R M+AGGTGI P +
Sbjct: 171 FVVRNVPQGKMSEYLSVQAKAGDKMSFTGPFGSF-YLRDVKRPVLMLAGGTGIAPFLSML 229
Query: 180 RAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSP 218
+ +LE + V L++ D++ ++LD+ P
Sbjct: 230 Q-VLEQKGSEHPVRLVFGVTQDCDLVALEQLDALQQKLP 267
>pdb|2BMW|A Chain A, Ferredoxin: Nadp+reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro,
Arg 264 Replaced By Pro And Gly 265 Replaced By Pro
(T155g- A160t-L263p-R264p-G265p)
Length = 304
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTNVH--------LIYANVTVGDILLKDELDSFATN 216
M+AGGTGITPM + ++ + N L++ T +IL K+EL+
Sbjct: 153 MLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 212
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 213 YPDNFRLTYAISREQKNPQGG 233
>pdb|1H42|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr And Leu 263 Replaced By Pro
(T155g-A160t-L263p)
Length = 304
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+AGGTGITPM + ++ + N L++ T +IL K+EL+
Sbjct: 153 MLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 212
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 213 YPDNFRLTYAISREQKNPQGG 233
>pdb|2VYQ|A Chain A, Ferredoxin:nadp Reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro
And Tyr 303 Replaced By Ser (T155g-A160t-L263p-Y303s)
pdb|2VZL|A Chain A, Ferredoxin-Nadp Reductase (Mutations: T155g, A160t, L263p
And Y303s) Complexed With Nad By Cocrystallization
Length = 304
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+AGGTGITPM + ++ + N L++ T +IL K+EL+
Sbjct: 153 MLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 212
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 213 YPDNFRLTYAISREQKNPQGG 233
>pdb|1OGI|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly And Ala 160 Replaced By Thr (T155g-A160t)
Length = 303
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+AGGTGITPM + ++ + N L++ T +IL K+EL+
Sbjct: 152 MLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 211
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 212 YPDNFRLTYAISREQKNPQGG 232
>pdb|1BQE|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly (T155g)
Length = 295
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+AGGTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 144 MLAGGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 203
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 204 YPDNFRLTYAISREQKNPQGG 224
>pdb|1QFJ|A Chain A, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
pdb|1QFJ|B Chain B, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
pdb|1QFJ|C Chain C, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
pdb|1QFJ|D Chain D, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
Length = 232
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 21/163 (12%)
Query: 105 RPYTPITLDSDIGYFEL-----VVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQ 159
RP++ + + G+ EL + +Y K M ++ + V P G + +
Sbjct: 46 RPFSMASTPDEKGFIELHIGASEINLYAKAVMDRILKDHQ----IVVDIPHGEAWLRDDE 101
Query: 160 ARAFGMIAGGTGITPMFQLTRAIL-----ENPKDKTNVHLIYANVTVGDILLKDELDSFA 214
R +IAGGTG F R+IL NP ++ + + + EL++ +
Sbjct: 102 ERPMILIAGGTG----FSYARSILLTALARNPN--RDITIYWGGREEQHLYDLCELEALS 155
Query: 215 TNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPDI 257
P +V V+ QP W G G V ++Q H DI
Sbjct: 156 LKHPG-LQVVPVVEQPEAGWRGRTGTVLTAVLQDHGTLAEHDI 197
>pdb|2PIA|A Chain A, Phthalate Dioxygenase Reductase: A Modular Structure For
Electron Transfer From Pyridine Nucleotides To [2fe-2s]
Length = 321
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 7/133 (5%)
Query: 52 ENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPIT 111
+ F K+ + I+ + F P+ + G ++ + N R Y+
Sbjct: 6 DGFLRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTV----AVPNGSRRTYSLCN 61
Query: 112 LDSDIGYFELVVKMYPKGRMAH--HFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGG 169
+ + + VK GR + EG+ + V P+ +A++F ++AGG
Sbjct: 62 DSQERNRYVIAVKRDSNGRGGSISFIDDTSEGDAVEVSLPRNEFPLD-KRAKSFILVAGG 120
Query: 170 TGITPMFQLTRAI 182
GITPM + R +
Sbjct: 121 IGITPMLSMARQL 133
>pdb|1OGJ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 263 Replaced By
Pro (L263p)
Length = 303
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 152 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 211
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 212 YPDNFRLTYAISREQKNPQGG 232
>pdb|1E64|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Gln (K75q)
Length = 304
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 153 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 212
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 213 YPDNFRLTYAISREQKNPQGG 233
>pdb|1QUF|A Chain A, X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+
Reductase From The Cyanobacterium Anabaena Pcc 7119 At
2.25 Angstroms
Length = 304
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 153 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 212
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 213 YPDNFRLTYAISREQKNPQGG 233
>pdb|1E62|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Arg (K75r)
Length = 304
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 153 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 212
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 213 YPDNFRLTYAISREQKNPQGG 233
>pdb|2X3U|A Chain A, Ferredoxin-Nadp Reductase Mutant With Tyr 303 Replaced By
Phe (Y303f)
Length = 303
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 152 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 211
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 212 YPDNFRLTYAISREQKNPQGG 232
>pdb|1GR1|A Chain A, Structure Of Ferredoxin-Nadp+ Reductase With Glu 139
Replaced By Lys (E139k)
Length = 303
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 152 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 211
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 212 YPDNFRLTYAISREQKNPQGG 232
>pdb|1GJR|A Chain A, Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By
Cocrystallization
Length = 304
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 153 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 212
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 213 YPDNFRLTYAISREQKNPQGG 233
>pdb|1GO2|A Chain A, Structure Of Ferredoxin-nadp+ Reductase With Lys 72
Replaced By Glu (k72e)
Length = 304
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 153 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 212
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 213 YPDNFRLTYAISREQKNPQGG 233
>pdb|1B2R|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: E 301 A)
Length = 304
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 153 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 212
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 213 YPDNFRLTYAISREQKNPQGG 233
>pdb|1W34|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S)
Length = 304
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 153 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 212
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 213 YPDNFRLTYAISREQKNPQGG 233
>pdb|1H85|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Val 136 Replaced By
Leu (V136l)
Length = 295
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 144 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 203
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 204 YPDNFRLTYAISREQKNPQGG 224
>pdb|2BSA|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Complexed
With Nadp
Length = 303
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 152 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 211
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 212 YPDNFRLTYAISREQKNPQGG 232
>pdb|1E63|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Ser (K75s)
Length = 304
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 153 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 212
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 213 YPDNFRLTYAISREQKNPQGG 233
>pdb|1QGY|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Glu (K75e)
Length = 295
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 144 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 203
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 204 YPDNFRLTYAISREQKNPQGG 224
>pdb|1QUE|A Chain A, X-Ray Structure Of The Ferredoxin:nadp+ Reductase From The
Cyanobacterium Anabaena Pcc 7119 At 1.8 Angstroms
Length = 303
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 152 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 211
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 212 YPDNFRLTYAISREQKNPQGG 232
>pdb|1EWY|A Chain A, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
pdb|1EWY|B Chain B, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
Length = 303
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 152 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 211
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 212 YPDNFRLTYAISREQKNPQGG 232
>pdb|1BJK|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Arg 264 Replaced By
Glu (r264e)
Length = 295
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 144 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 203
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 204 YPDNFRLTYAISREQKNPQGG 224
>pdb|1W35|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W)
pdb|1W87|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 W) Complexed
With Nadp By Cocrystallization
pdb|1W87|B Chain B, Ferredoxin-Nadp Reductase (Mutation: Y 303 W) Complexed
With Nadp By Cocrystallization
Length = 304
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 153 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 212
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 213 YPDNFRLTYAISREQKNPQGG 233
>pdb|1QH0|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutated By
Asp And Leu 78 Mutated By Asp
Length = 295
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 144 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 203
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 204 YPDNFRLTYAISREQKNPQGG 224
>pdb|1QGZ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 78 Replaced By
Asp (L78d)
Length = 295
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 165 MIAGGTGITPMFQLTRAILENPKDKTN--------VHLIYANVTVGDILLKDELDSFATN 216
M+A GTGI PM + ++ + N L++ T +IL K+EL+
Sbjct: 144 MLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 203
Query: 217 SPNRFKVYYVLSQPTEVWNGG 237
P+ F++ Y +S+ + GG
Sbjct: 204 YPDNFRLTYAISREQKNPQGG 224
>pdb|1GVH|A Chain A, The X-Ray Structure Of Ferric Escherichia Coli
Flavohemoglobin Reveals An Unespected Geometry Of The
Distal Heme Pocket
Length = 396
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 9/186 (4%)
Query: 52 ENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEG--NEVIRPYTP 109
E ++F++ +TP S F ++ GQ++ K EG ++ IR Y+
Sbjct: 150 EGTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLK-PEGFPHQEIRQYS- 207
Query: 110 ITLDSDIGYFELVVKMYPKGRMAHHFRE-MHEGEYLPVKGPKGRLKYKVGQARAFGMIAG 168
+T D + + VK G++++ + G+ + + P G V +I+
Sbjct: 208 LTRKPDGKGYRIAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISA 267
Query: 169 GTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDI-LLKDELDSFATNSPNRFKVYYVL 227
G G TPM + L V+ +A GD+ DE+ + P RF +
Sbjct: 268 GVGQTPMLAMLD-TLAKAGHTAQVNWFHA-AENGDVHAFADEVKELGQSLP-RFTAHTWY 324
Query: 228 SQPTEV 233
QP+E
Sbjct: 325 RQPSEA 330
>pdb|2OK7|A Chain A, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|B Chain B, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|C Chain C, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|D Chain D, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|E Chain E, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|F Chain F, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK8|A Chain A, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|B Chain B, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|C Chain C, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|D Chain D, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
Length = 316
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Query: 157 VGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVH----------LIYANVTVGD-IL 205
+ + F IA GTGI+P + + DK N++ IY V D IL
Sbjct: 167 IQKNTNFIFIATGTGISPYISFLKKLF--AYDKNNLYNRNSNYTGYITIYYGVYNEDSIL 224
Query: 206 LKDELDSFATNSPNRFKVYYVLS 228
+EL+ F PN ++YV S
Sbjct: 225 YLNELEYFQKMYPNNINIHYVFS 247
>pdb|3JQQ|A Chain A, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|B Chain B, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|C Chain C, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|D Chain D, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|E Chain E, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|F Chain F, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
Length = 316
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Query: 157 VGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVH----------LIYANVTVGD-IL 205
+ + F IA GTGI+P + + DK N++ IY V D IL
Sbjct: 167 IQKNTNFIFIATGTGISPYISFLKKLF--AYDKNNLYNRNSNYTGYITIYYGVYNEDSIL 224
Query: 206 LKDELDSFATNSPNRFKVYYVLS 228
+EL+ F PN ++YV S
Sbjct: 225 YLNELEYFQKMYPNNINIHYVFS 247
>pdb|3JQP|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|B Chain B, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|C Chain C, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|D Chain D, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|E Chain E, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|F Chain F, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQR|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum
Length = 316
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Query: 157 VGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVH----------LIYANVTVGD-IL 205
+ + F IA GTGI+P + + DK N++ IY V D IL
Sbjct: 167 IQKNTNFIFIATGTGISPYISFLKKLF--AYDKNNLYNRNSNYTGYITIYYGVYNEDSIL 224
Query: 206 LKDELDSFATNSPNRFKVYYVLS 228
+EL+ F PN ++YV S
Sbjct: 225 YLNELEYFQKMYPNNINIHYVFS 247
>pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC6|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
Length = 314
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 128 KGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFG---MIAGGTGITPMFQLTRAILE 184
KG +++ ++ G+ + + GP G+ K+ + G +A GTGI P ++ +LE
Sbjct: 131 KGVCSNYMCDLKPGDEVTMTGPSGK-KFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLE 189
Query: 185 NP--KDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLS-QPTEVWNGGIGHV 241
+ K N+ L+Y ++++ D L + N FK+ +S + ++GG ++
Sbjct: 190 HKLIKFTGNITLVYGAPYSDELVMMDYLKGLESKHKN-FKLITAISREEKNSFDGGRMYI 248
Query: 242 S 242
S
Sbjct: 249 S 249
>pdb|1DWU|A Chain A, Ribosomal Protein L1
pdb|1DWU|B Chain B, Ribosomal Protein L1
Length = 213
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 145 PVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQ-LTRAILENPKDKTNVHLIYANVTVGD 203
PV GP+G++ V +TP+ + L + +L N +DK H++ N + D
Sbjct: 121 PVLGPRGKMPQPV---------PANANLTPLVERLKKTVLINTRDKPLFHVLVGNEKMSD 171
Query: 204 ILLKDELDSFATNSPNRFK--VYYVLSQPTEVWNGGIGHVSK 243
L + +++ +++ +Y+V S T++ G + K
Sbjct: 172 EELAENIEAILNTVSRKYEKGLYHVKSAYTKLTMGPPAQIEK 213
>pdb|3OZU|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Miconazole
pdb|3OZV|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZV|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZW|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
pdb|3OZW|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
Length = 403
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 141 GEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENP 186
G+ + + P G V +I+GG G+TPM + + L+ P
Sbjct: 247 GDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQAP 292
>pdb|1CQX|A Chain A, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
pdb|1CQX|B Chain B, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
Length = 403
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 141 GEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENP 186
G+ + + P G V +I+GG G+TPM + + L+ P
Sbjct: 247 GDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQAP 292
>pdb|1GAQ|A Chain A, Crystal Structure Of The Complex Between Ferredoxin And
Ferredoxin-Nadp+ Reductase
pdb|1GAQ|C Chain C, Crystal Structure Of The Complex Between Ferredoxin And
Ferredoxin-Nadp+ Reductase
pdb|1GAW|A Chain A, Crystal Structure Analysis Of The Ferredoxin-Nadp+
Reductase From Maize Leaf
pdb|1GAW|B Chain B, Crystal Structure Analysis Of The Ferredoxin-Nadp+
Reductase From Maize Leaf
Length = 314
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 128 KGRMAHHFREMHEGEYLPVKGPKGR--LKYKVGQARAFGMIAGGTGITPMFQ-LTRAILE 184
KG ++ ++ G+ + + GP G+ L K A M+A GTGI P L + E
Sbjct: 129 KGVCSNFLCDLQPGDNVQITGPVGKEMLMPKDPNATII-MLATGTGIAPFRSFLWKMFFE 187
Query: 185 NPKDK--TNVHLIYANV-TVGDILLKDELDSFATNSPNRFKVYYVLSQ 229
D + ++ V T +L K+E +P F+V Y +S+
Sbjct: 188 KHDDYKFNGLGWLFLGVPTSSSLLYKEEFGKMKERAPENFRVDYAVSR 235
>pdb|1MU5|A Chain A, Structure Of Topoisomerase Subunit
Length = 471
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 175 MFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATN 216
++Q R ++EN D T+VH I N+ + L+ D + N
Sbjct: 33 LYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVN 74
>pdb|1Z5A|A Chain A, Topoisomerase Vi-B, Adp-Bound Dimer Form
pdb|1Z5A|B Chain B, Topoisomerase Vi-B, Adp-Bound Dimer Form
pdb|1Z5B|A Chain A, Topoisomerase Vi-B, Adp Alf4- Bound Dimer Form
pdb|1Z5B|B Chain B, Topoisomerase Vi-B, Adp Alf4- Bound Dimer Form
pdb|2HKJ|A Chain A, Topoisomerase Vi-B Bound To Radicicol
Length = 469
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 175 MFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATN 216
++Q R ++EN D T+VH I N+ + L+ D + N
Sbjct: 31 LYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVN 72
>pdb|1MX0|A Chain A, Structure Of Topoisomerase Subunit
pdb|1MX0|B Chain B, Structure Of Topoisomerase Subunit
pdb|1MX0|C Chain C, Structure Of Topoisomerase Subunit
pdb|1MX0|D Chain D, Structure Of Topoisomerase Subunit
pdb|1MX0|E Chain E, Structure Of Topoisomerase Subunit
pdb|1MX0|F Chain F, Structure Of Topoisomerase Subunit
Length = 472
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 175 MFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATN 216
++Q R ++EN D T+VH I N+ + L+ D + N
Sbjct: 34 LYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVN 75
>pdb|1Z59|A Chain A, Topoisomerase Vi-B, Adp-Bound Monomer Form
pdb|1Z5C|A Chain A, Topoisomerase Vi-B, Adp Pi Bound Dimer Form
pdb|1Z5C|B Chain B, Topoisomerase Vi-B, Adp Pi Bound Dimer Form
Length = 469
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 175 MFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATN 216
++Q R ++EN D T+VH I N+ + L+ D + N
Sbjct: 31 LYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVN 72
>pdb|2ZBK|B Chain B, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|D Chain D, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|F Chain F, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|H Chain H, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
Length = 530
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 175 MFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATN 216
++Q R ++EN D T+VH I N+ + L+ D + N
Sbjct: 32 LYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVN 73
>pdb|2EX2|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli
pdb|2EX6|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Ampicillin
pdb|2EX8|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Penicillin-G
pdb|2EX9|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Penicillin-V
pdb|2EXA|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Farom
pdb|2EXB|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Flomox
Length = 458
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 17/90 (18%)
Query: 84 GLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEY 143
G+ +G I+ G + +I P T + V Y +A H E++
Sbjct: 326 GVDIGNTIIADGSGLSRHNLIAPAT-----------MMQVLQY----IAQHDNELNFISM 370
Query: 144 LPVKGPKGRLKYKVG--QARAFGMIAGGTG 171
LP+ G G L+Y+ G QA G ++ TG
Sbjct: 371 LPLAGYDGSLQYRAGLHQAGVDGKVSAKTG 400
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,486,530
Number of Sequences: 62578
Number of extensions: 309732
Number of successful extensions: 731
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 57
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)