Query 042788
Match_columns 258
No_of_seqs 252 out of 1500
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 09:27:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0534 NADH-cytochrome b-5 re 100.0 7E-43 1.5E-47 296.4 24.5 212 44-256 41-252 (286)
2 PTZ00274 cytochrome b5 reducta 100.0 1.6E-37 3.5E-42 272.4 25.2 202 51-253 49-259 (325)
3 PTZ00319 NADH-cytochrome B5 re 100.0 2.5E-37 5.3E-42 269.6 26.2 210 41-253 20-258 (300)
4 cd06217 FNR_iron_sulfur_bindin 100.0 4.2E-36 9E-41 253.3 23.8 196 54-252 1-198 (235)
5 PRK11872 antC anthranilate dio 100.0 6.6E-36 1.4E-40 265.1 23.0 195 51-251 103-298 (340)
6 cd06210 MMO_FAD_NAD_binding Me 100.0 1.3E-35 2.8E-40 250.6 22.3 189 56-250 3-195 (236)
7 cd06183 cyt_b5_reduct_like Cyt 100.0 1.6E-35 3.5E-40 249.4 22.7 195 57-252 1-196 (234)
8 cd06215 FNR_iron_sulfur_bindin 100.0 2.1E-35 4.6E-40 248.4 23.2 193 57-253 1-195 (231)
9 cd06211 phenol_2-monooxygenase 100.0 2.4E-35 5.1E-40 249.5 23.1 194 51-251 3-199 (238)
10 PLN02252 nitrate reductase [NA 100.0 2.1E-35 4.6E-40 286.4 25.4 208 46-254 626-853 (888)
11 cd06188 NADH_quinone_reductase 100.0 7.3E-36 1.6E-40 258.8 19.5 200 48-251 4-242 (283)
12 PRK13289 bifunctional nitric o 100.0 1.2E-34 2.6E-39 262.5 27.9 202 48-253 148-357 (399)
13 cd06189 flavin_oxioreductase N 100.0 1.9E-35 4.1E-40 247.8 20.6 184 57-249 1-185 (224)
14 cd06184 flavohem_like_fad_nad_ 100.0 5.6E-35 1.2E-39 248.4 23.5 197 51-251 3-206 (247)
15 cd06191 FNR_iron_sulfur_bindin 100.0 1E-34 2.2E-39 244.4 23.1 190 58-252 2-194 (231)
16 cd06216 FNR_iron_sulfur_bindin 100.0 1.5E-34 3.2E-39 245.3 24.2 193 51-253 14-208 (243)
17 cd06209 BenDO_FAD_NAD Benzoate 100.0 8E-35 1.7E-39 244.6 21.9 187 56-251 3-190 (228)
18 COG1018 Hmp Flavodoxin reducta 100.0 1.2E-34 2.6E-39 247.2 22.7 193 51-253 2-195 (266)
19 TIGR02160 PA_CoA_Oxy5 phenylac 100.0 9.8E-35 2.1E-39 259.0 23.0 194 54-250 1-198 (352)
20 PRK07609 CDP-6-deoxy-delta-3,4 100.0 6.9E-35 1.5E-39 258.8 21.3 192 51-249 99-293 (339)
21 PRK10684 HCP oxidoreductase, N 100.0 1.3E-34 2.8E-39 256.2 23.0 192 54-253 9-201 (332)
22 PRK08051 fre FMN reductase; Va 100.0 8.9E-35 1.9E-39 245.1 20.1 188 54-250 2-190 (232)
23 PRK10926 ferredoxin-NADP reduc 100.0 2.4E-34 5.2E-39 244.7 22.7 183 53-243 3-187 (248)
24 cd06195 FNR1 Ferredoxin-NADP+ 100.0 1.2E-34 2.5E-39 245.6 20.0 182 58-246 1-185 (241)
25 cd06212 monooxygenase_like The 100.0 2.4E-34 5.2E-39 242.3 21.2 190 56-252 2-194 (232)
26 cd06214 PA_degradation_oxidore 100.0 9.4E-34 2E-38 239.9 22.6 193 55-250 2-197 (241)
27 cd06213 oxygenase_e_transfer_s 100.0 8.6E-34 1.9E-38 238.2 21.9 186 56-250 2-190 (227)
28 cd06187 O2ase_reductase_like T 100.0 7.3E-34 1.6E-38 238.0 20.6 182 59-247 1-183 (224)
29 cd06190 T4MO_e_transfer_like T 100.0 8.4E-34 1.8E-38 238.9 20.0 186 59-252 1-192 (232)
30 PLN03116 ferredoxin--NADP+ red 100.0 1.2E-33 2.6E-38 247.4 21.5 191 51-244 21-244 (307)
31 PRK08345 cytochrome-c3 hydroge 100.0 1.2E-33 2.6E-38 245.4 19.8 175 50-231 1-178 (289)
32 cd06208 CYPOR_like_FNR These f 100.0 3.5E-33 7.6E-38 242.2 21.3 192 51-245 5-224 (286)
33 PTZ00306 NADH-dependent fumara 100.0 1.3E-32 2.7E-37 276.2 27.1 213 42-256 902-1129(1167)
34 cd00322 FNR_like Ferredoxin re 100.0 6.8E-33 1.5E-37 231.5 20.9 176 61-242 2-177 (223)
35 PRK05464 Na(+)-translocating N 100.0 5.3E-33 1.1E-37 252.2 21.3 195 53-250 132-365 (409)
36 cd06196 FNR_like_1 Ferredoxin 100.0 6.3E-33 1.4E-37 231.5 19.5 182 56-252 2-184 (218)
37 PLN03115 ferredoxin--NADP(+) r 100.0 1.3E-32 2.8E-37 244.1 21.1 192 52-246 88-305 (367)
38 TIGR01941 nqrF NADH:ubiquinone 100.0 6.9E-33 1.5E-37 251.1 19.8 195 53-250 128-361 (405)
39 cd06221 sulfite_reductase_like 100.0 1.1E-32 2.4E-37 235.1 19.1 183 59-250 1-185 (253)
40 cd06194 FNR_N-term_Iron_sulfur 100.0 6E-32 1.3E-36 226.2 19.3 167 59-234 1-169 (222)
41 PRK08221 anaerobic sulfite red 100.0 6.4E-32 1.4E-36 231.6 19.6 175 56-247 9-184 (263)
42 PRK05713 hypothetical protein; 100.0 1.2E-31 2.7E-36 235.3 19.1 166 55-229 92-259 (312)
43 COG0543 UbiB 2-polyprenylpheno 100.0 3.4E-31 7.4E-36 225.4 19.8 182 56-252 9-190 (252)
44 PRK05802 hypothetical protein; 100.0 3.9E-31 8.5E-36 232.0 18.6 178 33-216 43-225 (320)
45 TIGR02911 sulfite_red_B sulfit 100.0 1.3E-30 2.7E-35 223.3 19.9 175 56-247 7-182 (261)
46 cd06201 SiR_like2 Cytochrome p 100.0 2E-30 4.4E-35 225.1 19.8 171 51-231 42-222 (289)
47 PRK06222 ferredoxin-NADP(+) re 100.0 2.5E-30 5.5E-35 223.7 18.3 177 57-254 2-179 (281)
48 cd06218 DHOD_e_trans FAD/NAD b 100.0 3.8E-30 8.2E-35 218.7 17.7 176 59-252 1-177 (246)
49 COG4097 Predicted ferric reduc 100.0 2.6E-30 5.5E-35 221.8 16.1 181 53-249 214-395 (438)
50 cd06192 DHOD_e_trans_like FAD/ 100.0 7.7E-30 1.7E-34 216.4 17.8 169 59-244 1-169 (243)
51 cd06182 CYPOR_like NADPH cytoc 100.0 8.8E-30 1.9E-34 218.7 18.3 169 67-243 15-198 (267)
52 TIGR03224 benzo_boxA benzoyl-C 100.0 1.7E-29 3.6E-34 228.7 20.7 186 51-244 139-347 (411)
53 cd06198 FNR_like_3 NAD(P) bind 100.0 1.5E-29 3.3E-34 210.9 18.6 156 65-229 5-161 (216)
54 cd06219 DHOD_e_trans_like1 FAD 100.0 1.7E-29 3.8E-34 214.9 17.8 173 57-250 1-174 (248)
55 PRK00054 dihydroorotate dehydr 100.0 4.9E-29 1.1E-33 212.4 18.1 171 53-245 3-174 (250)
56 cd06197 FNR_like_2 FAD/NAD(P) 100.0 4.3E-29 9.4E-34 208.8 15.6 153 61-215 2-180 (220)
57 cd06200 SiR_like1 Cytochrome p 100.0 3.3E-28 7.1E-33 206.6 19.2 163 68-244 17-187 (245)
58 COG2871 NqrF Na+-transporting 100.0 3.4E-29 7.5E-34 208.0 12.5 203 46-252 127-368 (410)
59 cd06185 PDR_like Phthalate dio 100.0 2E-28 4.4E-33 203.2 16.9 153 61-224 2-156 (211)
60 cd06220 DHOD_e_trans_like2 FAD 100.0 1.4E-27 3E-32 201.3 17.7 162 57-250 1-163 (233)
61 PLN02292 ferric-chelate reduct 100.0 1.4E-26 3E-31 219.1 23.6 190 55-254 325-533 (702)
62 cd06193 siderophore_interactin 99.9 5.4E-27 1.2E-31 198.0 13.6 158 59-230 1-178 (235)
63 PRK12778 putative bifunctional 99.9 1.8E-26 3.9E-31 224.0 17.9 175 57-252 2-177 (752)
64 PLN02631 ferric-chelate reduct 99.9 1.7E-25 3.8E-30 211.3 21.6 171 56-233 309-493 (699)
65 cd06186 NOX_Duox_like_FAD_NADP 99.9 4.6E-26 1E-30 188.9 15.4 147 61-212 3-162 (210)
66 PRK12779 putative bifunctional 99.9 3E-25 6.5E-30 218.1 21.4 184 53-250 647-836 (944)
67 PRK12775 putative trifunctiona 99.9 1.6E-24 3.6E-29 214.5 18.8 175 57-252 2-178 (1006)
68 PLN02844 oxidoreductase/ferric 99.9 2.6E-23 5.6E-28 197.5 23.3 168 58-233 315-503 (722)
69 cd06199 SiR Cytochrome p450- l 99.9 5.3E-23 1.1E-27 183.8 11.3 151 83-244 130-292 (360)
70 PF00970 FAD_binding_6: Oxidor 99.9 1.5E-22 3.3E-27 148.2 11.4 99 56-155 1-99 (99)
71 cd06207 CyPoR_like NADPH cytoc 99.9 1.7E-22 3.6E-27 182.1 13.3 139 101-244 161-313 (382)
72 cd06203 methionine_synthase_re 99.9 3.6E-22 7.8E-27 180.6 13.5 143 102-246 172-331 (398)
73 cd06206 bifunctional_CYPOR The 99.9 3.2E-22 7E-27 180.3 11.4 151 84-244 146-313 (384)
74 TIGR01931 cysJ sulfite reducta 99.9 3E-22 6.5E-27 189.2 10.8 153 83-246 367-531 (597)
75 PRK06214 sulfite reductase; Pr 99.8 1.5E-19 3.2E-24 167.3 20.9 133 104-243 316-461 (530)
76 cd06204 CYPOR NADPH cytochrome 99.8 1.3E-20 2.8E-25 171.4 13.3 138 102-244 176-348 (416)
77 cd06202 Nitric_oxide_synthase 99.8 2.1E-20 4.7E-25 169.4 13.5 140 102-245 175-335 (406)
78 PRK10953 cysJ sulfite reductas 99.8 1.7E-20 3.7E-25 176.7 11.7 153 83-246 370-534 (600)
79 KOG0039 Ferric reductase, NADH 99.8 2.8E-18 6.1E-23 163.0 12.5 167 55-228 355-551 (646)
80 KOG3378 Globins and related he 99.7 4.2E-17 9.2E-22 135.3 8.2 135 49-184 144-286 (385)
81 PRK06567 putative bifunctional 99.7 4.9E-16 1.1E-20 150.7 14.7 130 55-197 791-924 (1028)
82 PF00175 NAD_binding_1: Oxidor 99.7 5E-16 1.1E-20 115.2 9.6 85 165-251 1-85 (109)
83 COG0369 CysJ Sulfite reductase 99.6 1.3E-15 2.8E-20 142.2 12.9 135 104-244 373-519 (587)
84 KOG1158 NADP/FAD dependent oxi 99.6 1.1E-14 2.4E-19 136.2 10.0 130 102-232 420-567 (645)
85 COG2375 ViuB Siderophore-inter 99.5 4.4E-13 9.6E-18 112.8 15.0 148 52-204 15-183 (265)
86 KOG1159 NADP-dependent flavopr 99.4 6.5E-13 1.4E-17 118.4 7.8 121 104-232 368-498 (574)
87 PF08021 FAD_binding_9: Sidero 99.4 2.7E-12 5.9E-17 96.5 7.8 96 58-153 1-117 (117)
88 PF08022 FAD_binding_8: FAD-bi 99.3 9.6E-14 2.1E-18 102.6 -1.0 91 56-152 3-103 (105)
89 PF08030 NAD_binding_6: Ferric 99.0 3.8E-10 8.3E-15 89.0 5.5 73 160-232 1-79 (156)
90 COG1465 Predicted alternative 85.4 3.6 7.8E-05 35.6 6.8 106 53-168 198-316 (376)
91 PF00677 Lum_binding: Lumazine 82.7 12 0.00025 26.1 7.6 77 56-147 7-83 (85)
92 PRK12446 undecaprenyldiphospho 80.7 2.8 6.1E-05 37.5 4.7 25 161-185 2-28 (352)
93 PRK02290 3-dehydroquinate synt 79.5 7.3 0.00016 34.6 6.7 107 51-168 164-284 (344)
94 PRK09783 copper/silver efflux 77.4 32 0.0007 31.4 10.7 39 56-96 279-320 (409)
95 PF01959 DHQS: 3-dehydroquinat 76.2 11 0.00023 33.7 6.8 107 52-168 175-294 (354)
96 PF04954 SIP: Siderophore-inte 74.6 16 0.00035 27.0 6.7 58 161-230 2-59 (119)
97 PF00667 FAD_binding_1: FAD bi 72.5 11 0.00023 31.3 5.8 44 51-96 5-53 (219)
98 KOG1611 Predicted short chain- 69.8 21 0.00045 30.0 6.7 54 164-225 6-60 (249)
99 PF00667 FAD_binding_1: FAD bi 65.5 6.2 0.00013 32.7 2.9 25 102-126 177-202 (219)
100 TIGR00999 8a0102 Membrane Fusi 63.5 88 0.0019 26.2 10.6 40 55-96 155-197 (265)
101 PF09345 DUF1987: Domain of un 62.4 52 0.0011 23.7 6.9 59 172-231 27-89 (99)
102 PF08877 MepB: MepB protein; 60.8 60 0.0013 24.4 7.1 51 65-125 14-64 (123)
103 COG3008 PqiB Paraquat-inducibl 59.0 1.2E+02 0.0026 28.9 10.2 52 87-147 128-183 (553)
104 PF03033 Glyco_transf_28: Glyc 56.9 23 0.0005 26.3 4.6 29 163-194 1-31 (139)
105 PRK11556 multidrug efflux syst 55.0 1.3E+02 0.0029 27.5 9.9 40 55-96 272-314 (415)
106 COG3967 DltE Short-chain dehyd 53.1 43 0.00093 27.9 5.6 25 160-186 5-29 (245)
107 PRK00036 primosomal replicatio 52.8 31 0.00066 25.3 4.3 36 117-152 43-78 (107)
108 PF01272 GreA_GreB: Transcript 51.2 40 0.00086 22.8 4.5 63 84-155 5-70 (77)
109 PRK09289 riboflavin synthase s 49.8 1.2E+02 0.0026 24.7 7.9 79 56-150 9-87 (194)
110 PHA02099 hypothetical protein 46.9 33 0.00071 22.9 3.3 51 118-171 2-54 (84)
111 PRK15030 multidrug efflux syst 46.0 1.3E+02 0.0028 27.3 8.4 39 56-96 257-298 (397)
112 COG0782 Uncharacterized conser 44.7 43 0.00094 26.1 4.4 66 84-155 78-143 (151)
113 PRK00226 greA transcription el 43.8 36 0.00079 26.6 3.9 66 84-155 85-150 (157)
114 COG0707 MurG UDP-N-acetylgluco 43.4 48 0.001 29.8 5.0 25 162-186 2-28 (357)
115 cd06430 GT8_like_2 GT8_like_2 43.2 1.9E+02 0.0041 25.4 8.5 58 162-221 2-59 (304)
116 PRK13020 riboflavin synthase s 42.5 1.3E+02 0.0029 24.7 7.1 78 56-148 106-183 (206)
117 TIGR01931 cysJ sulfite reducta 42.1 96 0.0021 30.0 7.1 42 53-96 233-279 (597)
118 PF10694 DUF2500: Protein of u 41.1 29 0.00063 25.4 2.8 22 44-65 26-47 (110)
119 PRK00228 hypothetical protein; 40.8 1.6E+02 0.0035 23.8 7.3 69 142-211 74-147 (191)
120 PRK09289 riboflavin synthase s 40.2 1.9E+02 0.0041 23.6 7.6 77 56-147 105-181 (194)
121 PRK13020 riboflavin synthase s 39.8 1.4E+02 0.0031 24.5 6.9 80 56-150 9-88 (206)
122 PLN02741 riboflavin synthase 39.7 1.8E+02 0.0038 23.8 7.4 80 56-150 9-88 (194)
123 PRK01885 greB transcription el 39.1 87 0.0019 24.6 5.3 62 84-155 85-149 (157)
124 TIGR01730 RND_mfp RND family e 39.1 2.5E+02 0.0054 24.0 10.9 41 54-96 202-245 (322)
125 cd06204 CYPOR NADPH cytochrome 37.9 1.1E+02 0.0024 28.0 6.7 40 55-96 6-49 (416)
126 KOG1159 NADP-dependent flavopr 37.8 49 0.0011 31.1 4.1 45 48-94 190-239 (574)
127 cd06206 bifunctional_CYPOR The 37.4 63 0.0014 29.2 4.9 35 59-96 2-41 (384)
128 PLN02343 allene oxide cyclase 37.3 59 0.0013 26.5 4.1 49 119-173 112-164 (229)
129 PRK09859 multidrug efflux syst 37.2 1.9E+02 0.0041 26.0 8.0 39 56-96 253-294 (385)
130 cd05829 Sortase_E Sortase E (S 36.2 94 0.002 23.8 5.1 52 105-156 38-92 (144)
131 cd05830 Sortase_D_5 Sortase D 36.1 84 0.0018 23.8 4.8 24 133-156 61-84 (137)
132 PRK09578 periplasmic multidrug 35.1 2.3E+02 0.0049 25.5 8.2 27 68-96 271-297 (385)
133 PF10969 DUF2771: Protein of u 34.2 49 0.0011 26.1 3.2 32 82-113 70-101 (161)
134 PRK10953 cysJ sulfite reductas 33.4 1.3E+02 0.0029 29.1 6.6 42 53-96 236-282 (600)
135 TIGR00661 MJ1255 conserved hyp 32.6 79 0.0017 27.5 4.6 30 162-195 1-33 (321)
136 PRK11486 flagellar biosynthesi 32.3 2.2E+02 0.0048 21.5 6.6 72 19-93 19-90 (124)
137 KOG1478 3-keto sterol reductas 32.1 3.4E+02 0.0073 23.6 7.9 62 161-226 3-66 (341)
138 cd06199 SiR Cytochrome p450- l 31.7 85 0.0018 28.1 4.7 36 59-96 2-42 (360)
139 PF14991 MLANA: Protein melan- 30.5 17 0.00036 26.9 0.0 24 23-46 31-54 (118)
140 PF11948 DUF3465: Protein of u 30.4 1.2E+02 0.0025 23.2 4.4 23 128-150 76-98 (131)
141 PF06351 Allene_ox_cyc: Allene 30.0 50 0.0011 25.9 2.5 49 119-173 61-113 (176)
142 COG2130 Putative NADP-dependen 29.8 1.4E+02 0.003 26.5 5.4 74 83-170 89-185 (340)
143 PF12273 RCR: Chitin synthesis 29.4 46 0.001 25.1 2.3 19 22-40 5-23 (130)
144 PF11325 DUF3127: Domain of un 29.3 1.3E+02 0.0029 21.0 4.3 46 54-100 21-67 (84)
145 cd04482 RPA2_OBF_like RPA2_OBF 29.0 1.1E+02 0.0024 21.4 4.1 34 118-152 29-62 (91)
146 cd06166 Sortase_D_5 Sortase D 29.0 1.5E+02 0.0031 22.1 5.0 47 110-156 36-83 (126)
147 PF00106 adh_short: short chai 28.8 2.1E+02 0.0045 21.6 6.1 23 162-186 2-24 (167)
148 PRK13606 LPPG:FO 2-phospho-L-l 28.6 76 0.0016 27.9 3.7 22 162-183 2-23 (303)
149 TIGR01461 greB transcription e 28.1 2.4E+02 0.0051 22.1 6.1 62 84-155 83-147 (156)
150 cd06207 CyPoR_like NADPH cytoc 27.5 99 0.0022 27.9 4.5 28 67-96 15-42 (382)
151 TIGR01462 greA transcription e 26.9 97 0.0021 24.0 3.8 66 84-155 80-145 (151)
152 COG0521 MoaB Molybdopterin bio 26.8 26 0.00056 28.0 0.5 14 161-174 68-81 (169)
153 PRK07718 fliL flagellar basal 26.7 67 0.0015 24.7 2.8 13 28-40 15-27 (142)
154 COG3190 FliO Flagellar biogene 26.2 1.8E+02 0.0039 22.4 4.9 62 15-79 21-82 (137)
155 KOG4169 15-hydroxyprostaglandi 26.0 2.3E+02 0.005 24.1 5.9 24 160-185 5-28 (261)
156 COG0391 Uncharacterized conser 25.9 70 0.0015 28.4 3.0 24 160-183 7-30 (323)
157 TIGR03784 marine_sortase sorta 25.4 1.9E+02 0.0042 23.0 5.3 42 112-156 86-128 (174)
158 PF01933 UPF0052: Uncharacteri 25.2 98 0.0021 27.1 3.8 20 163-182 1-20 (300)
159 PF01887 SAM_adeno_trans: S-ad 24.7 90 0.002 26.7 3.4 81 56-146 171-258 (258)
160 PRK05892 nucleoside diphosphat 24.2 1.1E+02 0.0025 23.9 3.7 66 84-155 82-149 (158)
161 cd07044 CofD_YvcK Family of Co 24.1 1E+02 0.0022 27.1 3.8 20 163-182 1-20 (309)
162 TIGR03590 PseG pseudaminic aci 23.8 2.6E+02 0.0056 23.9 6.2 62 161-228 171-233 (279)
163 cd07187 YvcK_like family of mo 23.7 57 0.0012 28.7 2.1 20 163-182 1-20 (308)
164 PRK05753 nucleoside diphosphat 22.8 74 0.0016 24.3 2.3 58 86-152 56-116 (137)
165 COG0075 Serine-pyruvate aminot 22.7 3.5E+02 0.0076 24.7 6.9 83 137-219 76-162 (383)
166 TIGR00187 ribE riboflavin synt 22.4 4.4E+02 0.0095 21.6 7.8 76 56-147 106-183 (200)
167 TIGR01826 CofD_related conserv 21.8 64 0.0014 28.4 2.0 20 163-182 1-20 (310)
168 cd06919 Asp_decarbox Aspartate 21.7 3.1E+02 0.0068 20.2 5.2 87 52-154 7-93 (111)
169 COG0776 HimA Bacterial nucleoi 21.4 68 0.0015 22.9 1.7 20 136-156 35-54 (94)
170 PF14250 AbrB-like: AbrB-like 21.2 1.8E+02 0.0038 19.6 3.5 31 118-148 28-63 (71)
171 PRK03598 putative efflux pump 21.0 3.3E+02 0.0073 23.7 6.5 42 54-97 271-326 (331)
172 PRK05449 aspartate alpha-decar 20.7 2.9E+02 0.0064 20.9 5.0 87 52-154 8-94 (126)
173 TIGR00215 lpxB lipid-A-disacch 20.7 1.4E+02 0.0031 26.8 4.2 25 161-186 6-32 (385)
174 KOG1625 DNA polymerase alpha-p 20.3 3.2E+02 0.0069 26.2 6.2 79 70-152 281-384 (600)
175 PRK14096 pgi glucose-6-phospha 20.3 4E+02 0.0086 25.5 7.0 24 160-184 114-138 (528)
No 1
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=7e-43 Score=296.37 Aligned_cols=212 Identities=48% Similarity=0.962 Sum_probs=201.4
Q ss_pred CCCCCCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEE
Q 042788 44 KSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVV 123 (258)
Q Consensus 44 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~V 123 (258)
..+...++..|.++++++++.+++|+..++|..|.....++...|||+.+.++ .+|....|||||.|.+.+.|.++|.|
T Consensus 41 ~~~~~~~~~~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~-i~g~~vvRpYTPvs~~~~~g~~~l~V 119 (286)
T KOG0534|consen 41 GKKTLVDPESYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAP-IGGKLVVRPYTPVSLDDDKGYFDLVV 119 (286)
T ss_pred CcccccCCcceEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEec-CCCcEEEEecCCccCccccceEEEEE
Confidence 45667778789999999999999999999999998877899999999999999 88899999999999998889999999
Q ss_pred EEecCCccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcc
Q 042788 124 KMYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGD 203 (258)
Q Consensus 124 k~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d 203 (258)
|.|++|.+|++|+++++||+|+++||.|.|.+++..++++.|||||||||||++++++++.+..+.+++.|+|+|++.+|
T Consensus 120 K~Y~~G~mS~~l~~LkiGd~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d~tki~lly~N~te~D 199 (286)
T KOG0534|consen 120 KVYPKGKMSQHLDSLKIGDTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPEDTTKISLLYANKTEDD 199 (286)
T ss_pred EeccCCcccHHHhcCCCCCEEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCCCCcEEEEEEecCCccc
Confidence 99999999999999999999999999999999888899999999999999999999999999878899999999999999
Q ss_pred cccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCCCCCC
Q 042788 204 ILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPD 256 (258)
Q Consensus 204 ~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~~~~~ 256 (258)
+++++||+++++++|.||++++++++++..|.+..|||++++++++++.+.++
T Consensus 200 ILlr~eL~~la~~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~ 252 (286)
T KOG0534|consen 200 ILLREELEELASKYPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEG 252 (286)
T ss_pred cchHHHHHHHHhhCcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCC
Confidence 99999999999999988999999999999999999999999999999988763
No 2
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=100.00 E-value=1.6e-37 Score=272.37 Aligned_cols=202 Identities=36% Similarity=0.617 Sum_probs=176.1
Q ss_pred CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecC--CCCeeeeeccccccCCCCCEEEEEEEEecC
Q 042788 51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDS--EGNEVIRPYTPITLDSDIGYFELVVKMYPK 128 (258)
Q Consensus 51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~ 128 (258)
+..|++++|++++.+++++++++|+.+... .+.|.||||+.+.++.. ++....|+|||+|.|.+++.++|+||++++
T Consensus 49 ~~~~~~~~V~~i~~~t~dv~~f~f~lp~~~-~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~~~ 127 (325)
T PTZ00274 49 SQRYEPYQLGEVIPITHDTALFRFLLHSEE-EFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKD 127 (325)
T ss_pred CCceEEEEEEEEEEeCCCeEEEEEeCCccc-ccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEcCC
Confidence 778999999999999999999999987532 47899999999877621 234678999999999877899999999999
Q ss_pred CccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCC-----CCCCeEEEEEEeCCCcc
Q 042788 129 GRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENP-----KDKTNVHLIYANVTVGD 203 (258)
Q Consensus 129 G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~-----~~~~~v~l~~~~r~~~d 203 (258)
|.+|.||+++++||+|.++||.|.+.++++..++++||||||||||+++|+++++.++ .+..+++|+|++|+.+|
T Consensus 128 G~~S~~L~~lk~Gd~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~d 207 (325)
T PTZ00274 128 GLMTNHLFGMHVGDKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERH 207 (325)
T ss_pred CcccHHHhcCCCCCEEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHHH
Confidence 9999999999999999999998887766565689999999999999999999988753 13458999999999999
Q ss_pred cccHHHHHHHHhhCCCCeEEEEEEcCC--CCCCCCccccccHHHHhhhCCCC
Q 042788 204 ILLKDELDSFATNSPNRFKVYYVLSQP--TEVWNGGIGHVSKEMIQMHCPTP 253 (258)
Q Consensus 204 ~~~~~eL~~l~~~~~~~~~v~~~~s~~--~~~~~~~~G~i~~~~l~~~~~~~ 253 (258)
++|.+||++|++++|++|+++++++++ ++.|.+..|+++++++.+.++++
T Consensus 208 i~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~~~~ 259 (325)
T PTZ00274 208 ILLKGLFDDLARRYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPAP 259 (325)
T ss_pred hhHHHHHHHHHHhCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHhcCCC
Confidence 999999999999999779999999965 46688889999999888877654
No 3
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=100.00 E-value=2.5e-37 Score=269.58 Aligned_cols=210 Identities=44% Similarity=0.787 Sum_probs=179.8
Q ss_pred hccCCCCCCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCC----eeeeeccccccCCCC
Q 042788 41 SIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGN----EVIRPYTPITLDSDI 116 (258)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~----~~~R~ySi~s~~~~~ 116 (258)
+....+..+++..|+.++|++++.+++++..++|+.+++.....|+||||+.|+++ ..+. ...|+|||++.+.++
T Consensus 20 ~~~~~~~~~~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~-~~~~~~~~~~~R~YS~~s~~~~~ 98 (300)
T PTZ00319 20 FSRSPPVALDPDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCD-CTTPGKPETVQHSYTPISSDDEK 98 (300)
T ss_pred hccCCccccCcCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEE-eCCCCccceEEeeeccCCCcccC
Confidence 44556778899999999999999999999999999875544578999999999987 3332 578999999999877
Q ss_pred CEEEEEEEEe---------cCCccccccccCCCCCEEEEecccceeeecCC---------------CCceEEEEEcCccH
Q 042788 117 GYFELVVKMY---------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKVG---------------QARAFGMIAGGTGI 172 (258)
Q Consensus 117 ~~l~~~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~---------------~~~~vvliagGtGI 172 (258)
+.++|+||.+ ++|.+|+||+.+++||+|.++||+|.|.+..+ ..++++||||||||
T Consensus 99 ~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGI 178 (300)
T PTZ00319 99 GYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGI 178 (300)
T ss_pred CEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEccceeeEecCCcceeeccccccccccccceEEEEecCccc
Confidence 8999999987 67999999999999999999999999866421 12579999999999
Q ss_pred HHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCC-CCCCCCccccccHHHHhhhCC
Q 042788 173 TPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQP-TEVWNGGIGHVSKEMIQMHCP 251 (258)
Q Consensus 173 tp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~-~~~~~~~~G~i~~~~l~~~~~ 251 (258)
||+++|++++.++..+..+++++|++|+.++++|.+||+++ +++++ ++++++++++ ++.|.+..|++++..+++.++
T Consensus 179 aP~~sml~~l~~~~~~~~~i~liyg~r~~~dl~~~~eL~~~-~~~~~-~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~ 256 (300)
T PTZ00319 179 TPMLQIIHAIKKNKEDRTKVFLVYANQTEDDILLRKELDEA-AKDPR-FHVWYTLDREATPEWKYGTGYVDEEMLRAHLP 256 (300)
T ss_pred CHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHH-hhCCC-EEEEEEECCCCCCCcccccceeCHHHHHhhcC
Confidence 99999999998764445689999999999999999999995 45666 9999999874 467888899999999988877
Q ss_pred CC
Q 042788 252 TP 253 (258)
Q Consensus 252 ~~ 253 (258)
+.
T Consensus 257 ~~ 258 (300)
T PTZ00319 257 VP 258 (300)
T ss_pred Cc
Confidence 44
No 4
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=100.00 E-value=4.2e-36 Score=253.32 Aligned_cols=196 Identities=26% Similarity=0.466 Sum_probs=172.7
Q ss_pred cEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccc
Q 042788 54 FKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAH 133 (258)
Q Consensus 54 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~ 133 (258)
|++++|++++.+++++++++|+.++.. ...|+||||+.+++++.++...+|+|||++.+.+.+.++|+||..++|.+|.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~ 79 (235)
T cd06217 1 WRVLRVTEIIQETPTVKTFRLAVPDGV-PPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSP 79 (235)
T ss_pred CceEEEEEEEecCCCeEEEEEECCCCC-cCCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCcchH
Confidence 678999999999999999999988754 4689999999999974455566799999999987789999999988899999
Q ss_pred ccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHH
Q 042788 134 HFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDS 212 (258)
Q Consensus 134 ~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~ 212 (258)
||. .+++||.|.+.||+|.|.+.....++++|||||+||||++++++++...+ ...+++++|++|+.+++++.+||++
T Consensus 80 ~l~~~l~~Gd~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~-~~~~i~l~~~~r~~~~~~~~~el~~ 158 (235)
T cd06217 80 YLHDEVKVGDLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLG-WPVPFRLLYSARTAEDVIFRDELEQ 158 (235)
T ss_pred HHHhcCCCCCEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcC-CCceEEEEEecCCHHHhhHHHHHHH
Confidence 997 58999999999999998876545689999999999999999999998864 4568999999999999999999999
Q ss_pred HHhhCCCCeEEEEEEcCC-CCCCCCccccccHHHHhhhCCC
Q 042788 213 FATNSPNRFKVYYVLSQP-TEVWNGGIGHVSKEMIQMHCPT 252 (258)
Q Consensus 213 l~~~~~~~~~v~~~~s~~-~~~~~~~~G~i~~~~l~~~~~~ 252 (258)
+++++++ ++++.+++++ .++|.+..|+++++.+++..++
T Consensus 159 ~~~~~~~-~~~~~~~s~~~~~~~~~~~g~~~~~~l~~~~~~ 198 (235)
T cd06217 159 LARRHPN-LHVTEALTRAAPADWLGPAGRITADLIAELVPP 198 (235)
T ss_pred HHHHCCC-eEEEEEeCCCCCCCcCCcCcEeCHHHHHhhCCC
Confidence 9998888 9999999987 5677788999999888776543
No 5
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=100.00 E-value=6.6e-36 Score=265.15 Aligned_cols=195 Identities=20% Similarity=0.312 Sum_probs=171.6
Q ss_pred CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCc
Q 042788 51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGR 130 (258)
Q Consensus 51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~ 130 (258)
+.++.+++|++++.++++++.++|+.+.......|+||||+.|+++ +...+|+|||++.|.+.+.++|+||.+++|.
T Consensus 103 ~~~~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~---~~~~~R~ySias~p~~~~~l~~~ik~~~~G~ 179 (340)
T PRK11872 103 DTLKISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIP---GTDDWRSYSFANRPNATNQLQFLIRLLPDGV 179 (340)
T ss_pred ccceeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeC---CCCceeecccCCCCCCCCeEEEEEEECCCCc
Confidence 4456689999999999999999999875433578999999999987 3445899999999877789999999999999
Q ss_pred cccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHH
Q 042788 131 MAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDE 209 (258)
Q Consensus 131 ~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~e 209 (258)
+|.||+ .+++||+|.++||+|.|.++. ..++++||||||||||++++++++...+ ..++++|+|++|+.+|++|.++
T Consensus 180 ~s~~L~~~l~~G~~v~i~gP~G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~~~-~~~~v~l~~g~r~~~dl~~~~e 257 (340)
T PRK11872 180 MSNYLRERCQVGDEILFEAPLGAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAEQG-CSPPVHLYYGVRHAADLCELQR 257 (340)
T ss_pred chhhHhhCCCCCCEEEEEcCcceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHHcC-CCCcEEEEEecCChHHhccHHH
Confidence 999995 799999999999999988764 3489999999999999999999998864 3468999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCC
Q 042788 210 LDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCP 251 (258)
Q Consensus 210 L~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~ 251 (258)
|++|++++|+ |+++.++++++++|.+..|++++.+.+..+.
T Consensus 258 l~~~~~~~~~-~~~~~~~s~~~~~~~g~~g~v~~~l~~~~l~ 298 (340)
T PRK11872 258 LAAYAERLPN-FRYHPVVSKASADWQGKRGYIHEHFDKAQLR 298 (340)
T ss_pred HHHHHHHCCC-cEEEEEEeCCCCcCCCceeeccHHHHHhhcC
Confidence 9999999998 9999999988888999999999876655443
No 6
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=100.00 E-value=1.3e-35 Score=250.60 Aligned_cols=189 Identities=22% Similarity=0.387 Sum_probs=166.3
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCC---CccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKS---TSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA 132 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~---~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S 132 (258)
+++|++++.++++++.++|+.++. .....|+||||+.|+++ +...+|+|||++.+.+++.++|+||.+++|.+|
T Consensus 3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~---~~~~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s 79 (236)
T cd06210 3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIP---GTDTRRSYSLANTPNWDGRLEFLIRLLPGGAFS 79 (236)
T ss_pred eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcC---CCccceecccCCCCCCCCEEEEEEEEcCCCccc
Confidence 789999999999999999998764 12478999999999977 334579999999998678999999998889999
Q ss_pred ccccc-CCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHH
Q 042788 133 HHFRE-MHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD 211 (258)
Q Consensus 133 ~~L~~-l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~ 211 (258)
.+|.+ +++||+|.++||+|.|.++....++++||||||||||++++++++.... ...+++|+|++|+.+++++.++|+
T Consensus 80 ~~l~~~~~~Gd~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~ 158 (236)
T cd06210 80 TYLETRAKVGQRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG-EPQEARLFFGVNTEAELFYLDELK 158 (236)
T ss_pred hhhhhCcCCCCEEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC-CCceEEEEEecCCHHHhhhHHHHH
Confidence 99975 9999999999999999887655688999999999999999999998763 346899999999999999999999
Q ss_pred HHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhC
Q 042788 212 SFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHC 250 (258)
Q Consensus 212 ~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~ 250 (258)
++++++++ ++++++++++.++|.+..|++.+.+ .+.+
T Consensus 159 ~l~~~~~~-~~~~~~~s~~~~~~~~~~g~~~~~l-~~~l 195 (236)
T cd06210 159 RLADSLPN-LTVRICVWRPGGEWEGYRGTVVDAL-REDL 195 (236)
T ss_pred HHHHhCCC-eEEEEEEcCCCCCcCCccCcHHHHH-HHhh
Confidence 99999998 9999999987778888899998754 4444
No 7
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=100.00 E-value=1.6e-35 Score=249.39 Aligned_cols=195 Identities=52% Similarity=0.984 Sum_probs=171.9
Q ss_pred EEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc
Q 042788 57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR 136 (258)
Q Consensus 57 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~ 136 (258)
++|++++.+++++..++|+.++......++||||+.|+++ .++....|+|||++.+.+.+.++|+||.+++|.+|+||+
T Consensus 1 ~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~-~~~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~~s~~l~ 79 (234)
T cd06183 1 FKLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAP-DDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGKMSQYLH 79 (234)
T ss_pred CEeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEec-CCCcccccccccccCCCcCCEEEEEEEECCCCcchhHHh
Confidence 3689999999999999999887533578999999999988 556677899999999877779999999988899999999
Q ss_pred cCCCCCEEEEecccceeeecCCCC-ceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHh
Q 042788 137 EMHEGEYLPVKGPKGRLKYKVGQA-RAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT 215 (258)
Q Consensus 137 ~l~~Gd~v~v~gP~G~f~~~~~~~-~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~ 215 (258)
++++||+|.++||+|.|.+.+... +++|||||||||||++++++++..+.....+++++|++|+.++.++.+||+++++
T Consensus 80 ~~~~G~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l~~~~r~~~~~~~~~~l~~~~~ 159 (234)
T cd06183 80 SLKPGDTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANRTEEDILLREELDELAK 159 (234)
T ss_pred cCCCCCEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEEEEecCCHHHhhhHHHHHHHHH
Confidence 999999999999999988765554 7999999999999999999999876333578999999999999999999999998
Q ss_pred hCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCC
Q 042788 216 NSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT 252 (258)
Q Consensus 216 ~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~ 252 (258)
+++++++++++++++++.|.+..|+++++.+++.+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 196 (234)
T cd06183 160 KHPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPP 196 (234)
T ss_pred hCcccEEEEEEEcCCCcCCccccceECHHHHHHhCCC
Confidence 8655599999999888888889999999888877653
No 8
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=100.00 E-value=2.1e-35 Score=248.40 Aligned_cols=193 Identities=26% Similarity=0.483 Sum_probs=170.8
Q ss_pred EEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc
Q 042788 57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR 136 (258)
Q Consensus 57 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~ 136 (258)
.+|++++.++++++.++|+.++.. ...|+||||+.|+++ ..+....|+|||++.+.+.+.++|+||..++|.+|.||+
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~-~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~ 78 (231)
T cd06215 1 LRCVKIIQETPDVKTFRFAAPDGS-LFAYKPGQFLTLELE-IDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLH 78 (231)
T ss_pred CeEEEEEEcCCCeEEEEEECCCCC-cCCcCCCCeEEEEEe-cCCCeEEEeeecccCCCCCCcEEEEEEEcCCCcchHHHH
Confidence 378999999999999999998763 368999999999988 556667899999999987788999999988899999995
Q ss_pred -cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHh
Q 042788 137 -EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT 215 (258)
Q Consensus 137 -~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~ 215 (258)
++++||++.+.||+|.|.+.....++++||||||||||++++++++.+.+ ...+++++|++|+.+++++.++|+++++
T Consensus 79 ~~~~~G~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~ 157 (231)
T cd06215 79 DNLKVGDELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR-PDADIVFIHSARSPADIIFADELEELAR 157 (231)
T ss_pred hcCCCCCEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC-CCCcEEEEEecCChhhhhHHHHHHHHHH
Confidence 79999999999999998876554689999999999999999999998764 4468999999999999999999999999
Q ss_pred hCCCCeEEEEEEcCCCCC-CCCccccccHHHHhhhCCCC
Q 042788 216 NSPNRFKVYYVLSQPTEV-WNGGIGHVSKEMIQMHCPTP 253 (258)
Q Consensus 216 ~~~~~~~v~~~~s~~~~~-~~~~~G~i~~~~l~~~~~~~ 253 (258)
++++ ++++++++++++. |.+..|+++.+.+++..++.
T Consensus 158 ~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 195 (231)
T cd06215 158 RHPN-FRLHLILEQPAPGAWGGYRGRLNAELLALLVPDL 195 (231)
T ss_pred HCCC-eEEEEEEccCCCCcccccCCcCCHHHHHHhcCCc
Confidence 8888 9999999987664 78889999998888776654
No 9
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=100.00 E-value=2.4e-35 Score=249.46 Aligned_cols=194 Identities=23% Similarity=0.383 Sum_probs=168.3
Q ss_pred CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCc
Q 042788 51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGR 130 (258)
Q Consensus 51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~ 130 (258)
+.....++|++++.++++++.++|+.++.. ...|+||||+.|+++ +....|+|||++.+.+.+.++|+||.+++|.
T Consensus 3 ~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~---~~~~~r~ySi~s~~~~~~~l~l~i~~~~~G~ 78 (238)
T cd06211 3 NVKDFEGTVVEIEDLTPTIKGVRLKLDEPE-EIEFQAGQYVNLQAP---GYEGTRAFSIASSPSDAGEIELHIRLVPGGI 78 (238)
T ss_pred CceEEeEEEEEEEecCCCEEEEEEEcCCCC-cCccCCCCeEEEEcC---CCCCccccccCCCCCCCCEEEEEEEECCCCc
Confidence 345568999999999999999999988763 258999999999977 3335799999999877789999999988899
Q ss_pred cccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHH
Q 042788 131 MAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDE 209 (258)
Q Consensus 131 ~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~e 209 (258)
+|++|+ .+++||+|.++||+|.|.+..+..++++||||||||||++++++++.+++ ...+++|+|++|+.++++|.+|
T Consensus 79 ~s~~l~~~l~~G~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~ 157 (238)
T cd06211 79 ATTYVHKQLKEGDELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERG-DTRKITLFFGARTRAELYYLDE 157 (238)
T ss_pred chhhHhhcCCCCCEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcC-CCCcEEEEEecCChhhhccHHH
Confidence 999996 79999999999999998776555589999999999999999999998874 3468999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEEEcCCC--CCCCCccccccHHHHhhhCC
Q 042788 210 LDSFATNSPNRFKVYYVLSQPT--EVWNGGIGHVSKEMIQMHCP 251 (258)
Q Consensus 210 L~~l~~~~~~~~~v~~~~s~~~--~~~~~~~G~i~~~~l~~~~~ 251 (258)
|+++++++++ ++++.+++++. +.|.+..|++++ .+++.++
T Consensus 158 l~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~g~v~~-~l~~~~~ 199 (238)
T cd06211 158 FEALEKDHPN-FKYVPALSREPPESNWKGFTGFVHD-AAKKHFK 199 (238)
T ss_pred HHHHHHhCCC-eEEEEEECCCCCCcCcccccCcHHH-HHHHhcc
Confidence 9999999998 99999999753 568888999987 4666654
No 10
>PLN02252 nitrate reductase [NADPH]
Probab=100.00 E-value=2.1e-35 Score=286.39 Aligned_cols=208 Identities=42% Similarity=0.771 Sum_probs=183.6
Q ss_pred CCCCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEE
Q 042788 46 RGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKM 125 (258)
Q Consensus 46 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~ 125 (258)
...+++.+|.+++|++++.++++++.|+|+++.......++||||+.|+++ .++....|+|||+|.+.+.+.++|+||.
T Consensus 626 ~~~l~p~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~-~~g~~~~R~YSpaS~~~~~g~lel~VK~ 704 (888)
T PLN02252 626 PVALNPREKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCAT-INGKLCMRAYTPTSSDDEVGHFELVIKV 704 (888)
T ss_pred ccccccCceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEe-cCCeEEEeeeEecccCCCCCEEEEEEEE
Confidence 346778889999999999999999999999987654578999999999987 5677789999999999877899999999
Q ss_pred e---------cCCccccccccCCCCCEEEEecccceeeec--------C--CCCceEEEEEcCccHHHHHHHHHHHHhCC
Q 042788 126 Y---------PKGRMAHHFREMHEGEYLPVKGPKGRLKYK--------V--GQARAFGMIAGGTGITPMFQLTRAILENP 186 (258)
Q Consensus 126 ~---------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~--------~--~~~~~vvliagGtGItp~~sil~~l~~~~ 186 (258)
+ ++|.+|++|+++++||+|.++||+|.|.+. . ...++++||||||||||+++++++++.++
T Consensus 705 ~~~~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~ 784 (888)
T PLN02252 705 YFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDP 784 (888)
T ss_pred EeccccCccCCCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhcc
Confidence 8 569999999999999999999999987542 1 13478999999999999999999998765
Q ss_pred CCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCC-CCCCCccccccHHHHhhhCCCCC
Q 042788 187 KDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPT-EVWNGGIGHVSKEMIQMHCPTPA 254 (258)
Q Consensus 187 ~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~-~~~~~~~G~i~~~~l~~~~~~~~ 254 (258)
.+.++++|+|++|+.+|++|++||+++++++|++|+++++++++. ++|.+..|+++++++++.++.+.
T Consensus 785 ~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~ 853 (888)
T PLN02252 785 EDKTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGG 853 (888)
T ss_pred CCCCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCC
Confidence 456789999999999999999999999999987799999999875 78999999999999988886543
No 11
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=100.00 E-value=7.3e-36 Score=258.77 Aligned_cols=200 Identities=21% Similarity=0.372 Sum_probs=169.8
Q ss_pred CCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecC----------------------------C
Q 042788 48 SLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDS----------------------------E 99 (258)
Q Consensus 48 ~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~----------------------------~ 99 (258)
.+.. ++.+++|++++.+++++++++|+.++.. ...|+||||+.|+++.. +
T Consensus 4 ~~~~-~~~~~~v~~~~~~~~d~~~l~l~~~~~~-~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (283)
T cd06188 4 VLGA-KKWECTVISNDNVATFIKELVLKLPSGE-EIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKH 81 (283)
T ss_pred cccc-ceEEEEEEEcccccchhhheEEecCCCc-eeeecCCceEEEEcCCccccccccccchhhhhHHhhhccccccccc
Confidence 4443 4557999999999999999999988753 25899999999998721 0
Q ss_pred CCeeeeeccccccCCCCCEEEEEEEE---------ecCCccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCc
Q 042788 100 GNEVIRPYTPITLDSDIGYFELVVKM---------YPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGT 170 (258)
Q Consensus 100 g~~~~R~ySi~s~~~~~~~l~~~Vk~---------~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGt 170 (258)
+....|+|||+|.|.+.+.++|+||. .++|.+|+||+++++||+|.++||+|.|.+.. ..+++|||||||
T Consensus 82 ~~~~~R~ySias~p~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~~-~~~~~vlIAgGt 160 (283)
T cd06188 82 DEPVSRAYSLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTASGPFGEFFIKD-TDREMVFIGGGA 160 (283)
T ss_pred CCccccccCcCCCCCCCCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCCEEEEECccccccccC-CCCcEEEEEecc
Confidence 23356999999999777899999996 45799999999999999999999999987753 457999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCC--CCCCCccccccHHHHhh
Q 042788 171 GITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPT--EVWNGGIGHVSKEMIQM 248 (258)
Q Consensus 171 GItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~--~~~~~~~G~i~~~~l~~ 248 (258)
||||+++|+++++.......+++|+|++|+.++++|.+||+++++++|+ ++++++++++. +.|.+..|++++.+++.
T Consensus 161 GItP~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~G~v~~~~~~~ 239 (283)
T cd06188 161 GMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEFPN-FKYHPVLSEPQPEDNWDGYTGFIHQVLLEN 239 (283)
T ss_pred cHhHHHHHHHHHHhcCCCCceEEEEEecCCHHHhhHHHHHHHHHHHCCC-eEEEEEECCCCccCCCCCcceeecHHHHHH
Confidence 9999999999987764334689999999999999999999999999998 99999988765 67888899999987776
Q ss_pred hCC
Q 042788 249 HCP 251 (258)
Q Consensus 249 ~~~ 251 (258)
.+.
T Consensus 240 ~~~ 242 (283)
T cd06188 240 YLK 242 (283)
T ss_pred Hhc
Confidence 553
No 12
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=100.00 E-value=1.2e-34 Score=262.53 Aligned_cols=202 Identities=25% Similarity=0.412 Sum_probs=171.7
Q ss_pred CCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCe--eeeeccccccCCCCCEEEEEEEE
Q 042788 48 SLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNE--VIRPYTPITLDSDIGYFELVVKM 125 (258)
Q Consensus 48 ~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~--~~R~ySi~s~~~~~~~l~~~Vk~ 125 (258)
...+..|++++|++++.++++++.++|+.++......|+||||+.|+++ .+|.. .+|+|||++.|.+ +.++|+||+
T Consensus 148 ~~~~~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~-~~~~~~~~~R~ySias~p~~-~~l~~~Vk~ 225 (399)
T PRK13289 148 PGGWRGWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLD-PEGEEYQEIRQYSLSDAPNG-KYYRISVKR 225 (399)
T ss_pred cCCCCCcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEe-cCCccccceeEEEeeeCCCC-CeEEEEEEE
Confidence 4445789999999999999999999999876433468999999999987 44533 3599999998864 789999999
Q ss_pred ecCCccccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCccc
Q 042788 126 YPKGRMAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDI 204 (258)
Q Consensus 126 ~~~G~~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~ 204 (258)
.++|.+|.||+ .+++||+|.++||+|.|.++....+++|||||||||||+++|++++.... ...+++++|++|+.+++
T Consensus 226 ~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~-~~~~v~l~~~~r~~~~~ 304 (399)
T PRK13289 226 EAGGKVSNYLHDHVNVGDVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ-PKRPVHFIHAARNGGVH 304 (399)
T ss_pred CCCCeehHHHhhcCCCCCEEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC-CCCCEEEEEEeCChhhc
Confidence 88899999997 59999999999999999887655689999999999999999999998763 45789999999999999
Q ss_pred ccHHHHHHHHhhCCCCeEEEEEEcCCCC-CCC----CccccccHHHHhhhCCCC
Q 042788 205 LLKDELDSFATNSPNRFKVYYVLSQPTE-VWN----GGIGHVSKEMIQMHCPTP 253 (258)
Q Consensus 205 ~~~~eL~~l~~~~~~~~~v~~~~s~~~~-~~~----~~~G~i~~~~l~~~~~~~ 253 (258)
+|.+||+++++++|+ ++++++++++.+ .+. +..|+++.+.+.+.++..
T Consensus 305 ~~~~eL~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~g~i~~~~l~~~~~~~ 357 (399)
T PRK13289 305 AFRDEVEALAARHPN-LKAHTWYREPTEQDRAGEDFDSEGLMDLEWLEAWLPDP 357 (399)
T ss_pred hHHHHHHHHHHhCCC-cEEEEEECCCccccccCCcccccCcccHHHHHhhCCCC
Confidence 999999999999998 999999987643 222 246999988887776533
No 13
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=100.00 E-value=1.9e-35 Score=247.79 Aligned_cols=184 Identities=27% Similarity=0.467 Sum_probs=163.8
Q ss_pred EEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc
Q 042788 57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR 136 (258)
Q Consensus 57 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~ 136 (258)
++|++++.+++++++++|+.++ ...|.||||+.|.++ . + ..|+|||++.+.+++.++|+||.+++|.+|++|.
T Consensus 1 ~~v~~~~~~t~~~~~l~l~~~~---~~~~~pGQ~v~l~~~-~-~--~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~ 73 (224)
T cd06189 1 CKVESIEPLNDDVYRVRLKPPA---PLDFLAGQYLDLLLD-D-G--DKRPFSIASAPHEDGEIELHIRAVPGGSFSDYVF 73 (224)
T ss_pred CEEEEEEeCCCceEEEEEecCC---CcccCCCCEEEEEcC-C-C--CceeeecccCCCCCCeEEEEEEecCCCccHHHHH
Confidence 4789999999999999999876 378999999999987 2 2 3799999999876789999999988899999885
Q ss_pred -cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHh
Q 042788 137 -EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT 215 (258)
Q Consensus 137 -~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~ 215 (258)
.+++||+|.++||+|.|.+.+...++++|||||+||||++++++++.... ...+++|+|++|+.+++++.+||+++++
T Consensus 74 ~~l~~G~~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~ 152 (224)
T cd06189 74 EELKENGLVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG-SKRPIHLYWGARTEEDLYLDELLEAWAE 152 (224)
T ss_pred HhccCCCEEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC-CCCCEEEEEecCChhhccCHHHHHHHHH
Confidence 69999999999999998876655689999999999999999999998874 4468999999999999999999999999
Q ss_pred hCCCCeEEEEEEcCCCCCCCCccccccHHHHhhh
Q 042788 216 NSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMH 249 (258)
Q Consensus 216 ~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~ 249 (258)
++++ ++++.++++++++|.+..|++++.+++..
T Consensus 153 ~~~~-~~~~~~~s~~~~~~~g~~g~v~~~l~~~~ 185 (224)
T cd06189 153 AHPN-FTYVPVLSEPEEGWQGRTGLVHEAVLEDF 185 (224)
T ss_pred hCCC-eEEEEEeCCCCcCCccccccHHHHHHhhc
Confidence 8888 99999999988889888999998766554
No 14
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=100.00 E-value=5.6e-35 Score=248.37 Aligned_cols=197 Identities=22% Similarity=0.354 Sum_probs=170.3
Q ss_pred CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCC--CeeeeeccccccCCCCCEEEEEEEEecC
Q 042788 51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEG--NEVIRPYTPITLDSDIGYFELVVKMYPK 128 (258)
Q Consensus 51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g--~~~~R~ySi~s~~~~~~~l~~~Vk~~~~ 128 (258)
+..|+.++|++++.+++++.+++|+.+.......|.||||+.|.++ ..+ ....|+|||++.+.+ +.++|.||.+++
T Consensus 3 ~~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~-~~~~~~~~~R~ySi~s~~~~-~~l~~~ik~~~~ 80 (247)
T cd06184 3 WRGFRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVK-LPGLGYRQIRQYSLSDAPNG-DYYRISVKREPG 80 (247)
T ss_pred CCCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEe-cCCCCCceeEEeEeccCCCC-CeEEEEEEEcCC
Confidence 4678999999999999999999999876533368999999999987 334 467899999999866 589999999888
Q ss_pred Ccccccccc-CCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccH
Q 042788 129 GRMAHHFRE-MHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLK 207 (258)
Q Consensus 129 G~~S~~L~~-l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~ 207 (258)
|.+|+||.+ +++||++.+.||+|.|.++....++++||||||||||++++++++..+. ...+++|+|++|+.++++|.
T Consensus 81 G~~s~~l~~~~~~Gd~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~-~~~~i~l~~~~r~~~~~~~~ 159 (247)
T cd06184 81 GLVSNYLHDNVKVGDVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEG-PGRPVTFIHAARNSAVHAFR 159 (247)
T ss_pred CcchHHHHhcCCCCCEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcC-CCCcEEEEEEcCchhhHHHH
Confidence 999999976 9999999999999998876545689999999999999999999998762 35789999999999999999
Q ss_pred HHHHHHHhhCCCCeEEEEEEcCCCCCC----CCccccccHHHHhhhCC
Q 042788 208 DELDSFATNSPNRFKVYYVLSQPTEVW----NGGIGHVSKEMIQMHCP 251 (258)
Q Consensus 208 ~eL~~l~~~~~~~~~v~~~~s~~~~~~----~~~~G~i~~~~l~~~~~ 251 (258)
++|+++++++++ ++++++++++.+.+ .+..|+++.+.+.+..+
T Consensus 160 ~~l~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l~~~~~ 206 (247)
T cd06184 160 DELEELAARLPN-LKLHVFYSEPEAGDREEDYDHAGRIDLALLRELLL 206 (247)
T ss_pred HHHHHHHhhCCC-eEEEEEECCCCcccccccccccCccCHHHHhhccC
Confidence 999999988888 99999999876543 56789999887776443
No 15
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=100.00 E-value=1e-34 Score=244.41 Aligned_cols=190 Identities=22% Similarity=0.397 Sum_probs=165.5
Q ss_pred EEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc-
Q 042788 58 KLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR- 136 (258)
Q Consensus 58 ~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~- 136 (258)
+|++++.+++++++++|+.++.. ...|+||||+.|+++ .++...+|+|||++.+. .+.++|.||.+++|.+|.||+
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~-~~~~~~~r~ySi~s~~~-~~~l~~~v~~~~~G~~s~~l~~ 78 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPL-QYGFRPGQHVTLKLD-FDGEELRRCYSLCSSPA-PDEISITVKRVPGGRVSNYLRE 78 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCC-CCCCCCCCeEEEEEe-cCCeEEeeeeeccCCCC-CCeEEEEEEECCCCccchHHHh
Confidence 68999999999999999987653 357999999999987 55667789999999887 588999999988899999997
Q ss_pred cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhh
Q 042788 137 EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATN 216 (258)
Q Consensus 137 ~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~ 216 (258)
++++||++.++||+|.|.+++...++++||||||||||++++++++.... ...+++++|++|+.++++|.+||++++++
T Consensus 79 ~~~~Gd~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~ 157 (231)
T cd06191 79 HIQPGMTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA-PESDFTLIHSARTPADMIFAQELRELADK 157 (231)
T ss_pred cCCCCCEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC-CCCCEEEEEecCCHHHHhHHHHHHHHHHh
Confidence 79999999999999999887666689999999999999999999998763 34789999999999999999999999988
Q ss_pred CCCCeEEEEEEcCCC--CCCCCccccccHHHHhhhCCC
Q 042788 217 SPNRFKVYYVLSQPT--EVWNGGIGHVSKEMIQMHCPT 252 (258)
Q Consensus 217 ~~~~~~v~~~~s~~~--~~~~~~~G~i~~~~l~~~~~~ 252 (258)
+++ +++++++++++ ++|.+..|++..++.+...++
T Consensus 158 ~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~ 194 (231)
T cd06191 158 PQR-LRLLCIFTRETLDSDLLHGRIDGEQSLGAALIPD 194 (231)
T ss_pred CCC-eEEEEEECCCCCCccccCCcccccHHHHHHhCcc
Confidence 888 99999998753 567777888887766655544
No 16
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=100.00 E-value=1.5e-34 Score=245.30 Aligned_cols=193 Identities=21% Similarity=0.347 Sum_probs=169.3
Q ss_pred CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCC-CCCEEEEEEEEecCC
Q 042788 51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDS-DIGYFELVVKMYPKG 129 (258)
Q Consensus 51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~-~~~~l~~~Vk~~~~G 129 (258)
..+...++|++++.+++++++++|+.++. ...|+||||+.|.++ .+|....|+|||++.+. +.+.++|.||.+++|
T Consensus 14 ~~~~~~~~v~~i~~~~~~~~~i~l~~~~~--~~~~~pGQ~i~l~~~-~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~~~G 90 (243)
T cd06216 14 SARELRARVVAVRPETADMVTLTLRPNRG--WPGHRAGQHVRLGVE-IDGVRHWRSYSLSSSPTQEDGTITLTVKAQPDG 90 (243)
T ss_pred ccceeEEEEEEEEEcCCCcEEEEEecCCC--CCCcCCCceEEEEEE-ECCeEEEEEEeccCCCcCCCCeEEEEEEEcCCC
Confidence 34666899999999999999999997764 468999999999987 55667789999999987 568999999998889
Q ss_pred ccccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHH
Q 042788 130 RMAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKD 208 (258)
Q Consensus 130 ~~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~ 208 (258)
.+|.||+ .+++||+|.+.||+|.|.++.+..++++|||||+||||++++++++...+ +..++.++|++|+.+++++.+
T Consensus 91 ~~s~~l~~~~~~Gd~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~-~~~~i~l~~~~r~~~~~~~~~ 169 (243)
T cd06216 91 LVSNWLVNHLAPGDVVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG-PTADVVLLYYARTREDVIFAD 169 (243)
T ss_pred cchhHHHhcCCCCCEEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC-CCCCEEEEEEcCChhhhHHHH
Confidence 9999997 59999999999999998877655689999999999999999999998874 457899999999999999999
Q ss_pred HHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCCC
Q 042788 209 ELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTP 253 (258)
Q Consensus 209 eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~~ 253 (258)
||+++++++++ ++++++++++ +..|+++.+.+++..++.
T Consensus 170 el~~l~~~~~~-~~~~~~~s~~-----~~~g~~~~~~l~~~~~~~ 208 (243)
T cd06216 170 ELRALAAQHPN-LRLHLLYTRE-----ELDGRLSAAHLDAVVPDL 208 (243)
T ss_pred HHHHHHHhCCC-eEEEEEEcCC-----ccCCCCCHHHHHHhccCc
Confidence 99999988888 9999888865 457899988888876654
No 17
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=100.00 E-value=8e-35 Score=244.62 Aligned_cols=187 Identities=25% Similarity=0.449 Sum_probs=163.4
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF 135 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L 135 (258)
+++|++++.+++++++++|+.++.. ...|+||||+.|+++ +....|+|||++.+.+ +.++|+||.+++|.+|+||
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~-~~~~~pGQ~v~l~~~---~~~~~r~ysi~s~~~~-~~i~~~i~~~~~G~~s~~l 77 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAG-ALAFLPGQYVNLQVP---GTDETRSYSFSSAPGD-PRLEFLIRLLPGGAMSSYL 77 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCC-cCccCCCCEEEEEeC---CCCcccccccccCCCC-CeEEEEEEEcCCCcchhhH
Confidence 6899999999999999999988742 478999999999987 3345799999998877 8999999998899999999
Q ss_pred cc-CCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHH
Q 042788 136 RE-MHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFA 214 (258)
Q Consensus 136 ~~-l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~ 214 (258)
++ +++||+|.++||+|.+.+... .++++||||||||||++++++++.... ...+++++|++|+.+++++.++|++++
T Consensus 78 ~~~l~~G~~v~v~gP~G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~ 155 (228)
T cd06209 78 RDRAQPGDRLTLTGPLGSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAEDG-SAHPVHLVYGVTRDADLVELDRLEALA 155 (228)
T ss_pred HhccCCCCEEEEECCcccceecCC-CCeEEEEEcccCHhHHHHHHHHHHhcC-CCCcEEEEEecCCHHHhccHHHHHHHH
Confidence 76 999999999999999876544 488999999999999999999998874 456899999999999999999999999
Q ss_pred hhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCC
Q 042788 215 TNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCP 251 (258)
Q Consensus 215 ~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~ 251 (258)
+++|+ ++++.++++++. |.+..|++++.+.+..++
T Consensus 156 ~~~~~-~~~~~~~s~~~~-~~~~~g~v~~~~~~~~~~ 190 (228)
T cd06209 156 ERLPG-FSFRTVVADPDS-WHPRKGYVTDHLEAEDLN 190 (228)
T ss_pred HhCCC-eEEEEEEcCCCc-cCCCcCCccHHHHHhhcc
Confidence 99998 999999997654 777889998865554443
No 18
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=100.00 E-value=1.2e-34 Score=247.24 Aligned_cols=193 Identities=21% Similarity=0.348 Sum_probs=168.4
Q ss_pred CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCc
Q 042788 51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGR 130 (258)
Q Consensus 51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~ 130 (258)
+..|.+++|++++.++++++.++|+.++.... .|+||||+.|.++ .++....|.||++|.|.+++.+.|.||+.++|.
T Consensus 2 ~~~~~~~~V~~v~~~t~di~sf~l~~~~g~~~-~f~pGQ~i~v~l~-~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G~ 79 (266)
T COG1018 2 SAGFRRVTVTSVEPETDDVFSFTLEPPDGLRL-DFEPGQYITVGLP-NGGEPLLRAYSLSSAPDEDSLYRISVKREDGGG 79 (266)
T ss_pred CCceEEEEEEEEEEecCceEEEEEEcCCCCcc-ccCCCCeEEEEec-CCCceeeEEEEeccCCCCCceEEEEEEEeCCCc
Confidence 35788999999999999999999999987422 7999999999999 667789999999999988789999999998899
Q ss_pred cccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHH
Q 042788 131 MAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDE 209 (258)
Q Consensus 131 ~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~e 209 (258)
+|+||+ ++++||+|.+.+|.|.|.++.....+++|+|||+||||++||++.+...+ . .++.++|++|+.+++.|+||
T Consensus 80 ~S~~Lh~~lk~Gd~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~-~-~~v~l~h~~R~~~~~af~de 157 (266)
T COG1018 80 GSNWLHDHLKVGDTLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG-P-ADVVLVHAARTPADLAFRDE 157 (266)
T ss_pred ccHHHHhcCCCCCEEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC-C-CCEEEEEecCChhhcchhhH
Confidence 999998 99999999999999999998766668999999999999999999998874 4 78999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCCC
Q 042788 210 LDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTP 253 (258)
Q Consensus 210 L~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~~ 253 (258)
+.+.+++|+...+..+.+ |....|+++...+....++.
T Consensus 158 -~~l~~~~~~~~~~~~~~~-----~~~~~g~~~~~~l~~~~~~~ 195 (266)
T COG1018 158 -LELAAELPNALLLGLYTE-----RGKLQGRIDVSRLLSAAPDG 195 (266)
T ss_pred -HHHHhhCCCCeeEEEEEe-----cCCccccccHHHHhccCCCC
Confidence 999999998666666665 33445777777666555443
No 19
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=100.00 E-value=9.8e-35 Score=259.04 Aligned_cols=194 Identities=23% Similarity=0.425 Sum_probs=168.1
Q ss_pred cEEEEEEEEEEeCCCEeEEEEECCCC-CccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccc
Q 042788 54 FKEFKLTKRTPISHNTAKFRFALPKS-TSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA 132 (258)
Q Consensus 54 ~~~~~v~~~~~~~~~~~~l~l~~~~~-~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S 132 (258)
|+.++|++++.+++++++++|+.++. ...+.|+||||+.|.++ .++....|+|||+|.|. ++.++|+||++++|.+|
T Consensus 1 ~~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~-~~g~~~~R~ySi~s~p~-~~~l~i~vk~~~~G~~S 78 (352)
T TIGR02160 1 FHRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRRE-VDGEELRRSYSICSAPA-PGEIRVAVKKIPGGLFS 78 (352)
T ss_pred CeEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEe-cCCcEeeeeccccCCCC-CCcEEEEEEEeCCCcch
Confidence 56899999999999999999998764 22368999999999987 55667789999999885 47899999999899999
Q ss_pred cccc-cCCCCCEEEEecccceeeecCCC--CceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHH
Q 042788 133 HHFR-EMHEGEYLPVKGPKGRLKYKVGQ--ARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDE 209 (258)
Q Consensus 133 ~~L~-~l~~Gd~v~v~gP~G~f~~~~~~--~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~e 209 (258)
.||+ ++++||+|.+.||+|.|.++... .++++||||||||||+++|+++++.++ ...+++|+|++|+.++++|.+|
T Consensus 79 ~~l~~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~-~~~~v~l~~~~r~~~d~~~~~e 157 (352)
T TIGR02160 79 TWANDEIRPGDTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE-PRSTFTLVYGNRRTASVMFAEE 157 (352)
T ss_pred HHHHhcCCCCCEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC-CCceEEEEEEeCCHHHHHHHHH
Confidence 9995 89999999999999998876432 378999999999999999999998763 3468999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhC
Q 042788 210 LDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHC 250 (258)
Q Consensus 210 L~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~ 250 (258)
|+++++++|++++++++++++++.|.+..|+++...+.+.+
T Consensus 158 l~~l~~~~~~~~~~~~~~s~~~~~~~~~~gr~~~~~l~~~l 198 (352)
T TIGR02160 158 LADLKDKHPQRFHLAHVLSREPREAPLLSGRLDGERLAALL 198 (352)
T ss_pred HHHHHHhCcCcEEEEEEecCCCcCcccccCccCHHHHHHHH
Confidence 99999988877999999998877776678898876665554
No 20
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=100.00 E-value=6.9e-35 Score=258.80 Aligned_cols=192 Identities=21% Similarity=0.379 Sum_probs=168.0
Q ss_pred CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCc
Q 042788 51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGR 130 (258)
Q Consensus 51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~ 130 (258)
+.+..+++|++++.++++++.++|+.+... .+.|+||||+.|.++ . + ..|+|||+|.|.+.+.++|+||.+++|.
T Consensus 99 ~~~~~~~~V~~~~~~~~d~~~l~l~~~~~~-~~~~~pGQfv~l~~~-~-~--~~R~ySias~p~~~~~l~~~ik~~~~G~ 173 (339)
T PRK07609 99 PVKKLPCRVASLERVAGDVMRLKLRLPATE-RLQYLAGQYIEFILK-D-G--KRRSYSIANAPHSGGPLELHIRHMPGGV 173 (339)
T ss_pred cceEEEEEEEEEEcCCCcEEEEEEEcCCCC-CCccCCCCeEEEECC-C-C--ceeeeecCCCCCCCCEEEEEEEecCCCc
Confidence 345568999999999999999999987542 478999999999987 2 3 3699999999977789999999998999
Q ss_pred cccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHH
Q 042788 131 MAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDE 209 (258)
Q Consensus 131 ~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~e 209 (258)
+|+||. .+++||+|.++||+|.|.++....++++||||||||||+++|++++...+ ..++++|+|++|+.+++++.++
T Consensus 174 ~s~~l~~~l~~G~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~-~~~~i~l~~g~r~~~dl~~~e~ 252 (339)
T PRK07609 174 FTDHVFGALKERDILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG-IQRPVTLYWGARRPEDLYLSAL 252 (339)
T ss_pred cHHHHHHhccCCCEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC-CCCcEEEEEecCChHHhccHHH
Confidence 999995 79999999999999999876556689999999999999999999998764 4468999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEEEcCC--CCCCCCccccccHHHHhhh
Q 042788 210 LDSFATNSPNRFKVYYVLSQP--TEVWNGGIGHVSKEMIQMH 249 (258)
Q Consensus 210 L~~l~~~~~~~~~v~~~~s~~--~~~~~~~~G~i~~~~l~~~ 249 (258)
|++|++++|+ ++++++++++ ++.|.+..|++++.+++..
T Consensus 253 l~~~~~~~~~-~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~~ 293 (339)
T PRK07609 253 AEQWAEELPN-FRYVPVVSDALDDDAWTGRTGFVHQAVLEDF 293 (339)
T ss_pred HHHHHHhCCC-eEEEEEecCCCCCCCccCccCcHHHHHHhhc
Confidence 9999999998 9999999974 5678888999999766554
No 21
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=100.00 E-value=1.3e-34 Score=256.24 Aligned_cols=192 Identities=18% Similarity=0.301 Sum_probs=164.7
Q ss_pred cEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccc
Q 042788 54 FKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAH 133 (258)
Q Consensus 54 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~ 133 (258)
...++|++++.++++++.++|+.++. ..|+||||+.|+++ . +....|+|||+|.|.+.+.++|+||++++|.+|+
T Consensus 9 ~~~~~V~~i~~~t~~v~~l~l~~~~~---~~f~pGQfv~l~~~-~-~~~~~R~ySias~p~~~~~l~i~Vk~~~~G~~S~ 83 (332)
T PRK10684 9 PNRMQVHSIVQETPDVWTISLICHDF---YPYRAGQYALVSIR-N-SAETLRAYTLSSTPGVSEFITLTVRRIDDGVGSQ 83 (332)
T ss_pred ceeEEEEEEEccCCCeEEEEEcCCCC---CCcCCCCEEEEEec-C-CCEeeeeecccCCCCCCCcEEEEEEEcCCCcchh
Confidence 44899999999999999999987653 78999999999987 2 3356799999999977788999999999999999
Q ss_pred ccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHH
Q 042788 134 HFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDS 212 (258)
Q Consensus 134 ~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~ 212 (258)
||+ ++++||+|.++||+|.|.++....++++||||||||||+++|++++..+. ...+++|+|++|+.++++|.+||++
T Consensus 84 ~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~-~~~~v~l~y~~r~~~~~~~~~el~~ 162 (332)
T PRK10684 84 WLTRDVKRGDYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR-PQADVQVIFNVRTPQDVIFADEWRQ 162 (332)
T ss_pred HHHhcCCCCCEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC-CCCCEEEEEeCCChHHhhhHHHHHH
Confidence 995 89999999999999999876555678999999999999999999998763 3468999999999999999999999
Q ss_pred HHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCCC
Q 042788 213 FATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTP 253 (258)
Q Consensus 213 l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~~ 253 (258)
+++++++ ++++++.+++. ......|+++.+.+++.++++
T Consensus 163 l~~~~~~-~~~~~~~~~~~-~~~~~~grl~~~~l~~~~~~~ 201 (332)
T PRK10684 163 LKQRYPQ-LNLTLVAENNA-TEGFIAGRLTRELLQQAVPDL 201 (332)
T ss_pred HHHHCCC-eEEEEEeccCC-CCCccccccCHHHHHHhcccc
Confidence 9999998 88887776532 122257999998888766654
No 22
>PRK08051 fre FMN reductase; Validated
Probab=100.00 E-value=8.9e-35 Score=245.06 Aligned_cols=188 Identities=21% Similarity=0.299 Sum_probs=163.8
Q ss_pred cEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccc
Q 042788 54 FKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAH 133 (258)
Q Consensus 54 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~ 133 (258)
+.+++|++++.++++++.++|+.++. ..|+||||+.++++ . ...|+|||+|.|.+++.++|.|+..+.|..+.
T Consensus 2 ~~~~~v~~i~~~~~~~~~l~l~~~~~---~~~~pGQ~v~l~~~-~---~~~r~ySias~p~~~~~l~~~v~~~~~~~~~~ 74 (232)
T PRK08051 2 TLSCKVTSVEAITDTVYRVRLVPEAP---FSFRAGQYLMVVMG-E---KDKRPFSIASTPREKGFIELHIGASELNLYAM 74 (232)
T ss_pred eeEEEEEEEecCCCCeEEEEEecCCC---CccCCCCEEEEEcC-C---CcceeecccCCCCCCCcEEEEEEEcCCCcchH
Confidence 35799999999999999999987653 68999999999986 2 24699999999876688999999987777666
Q ss_pred cc-ccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHH
Q 042788 134 HF-REMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDS 212 (258)
Q Consensus 134 ~L-~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~ 212 (258)
++ .++++||+|.+.||+|.|.+.++..+++||||||+||||++++++++...+ ...++.++|++|+.++++|.+||++
T Consensus 75 ~~~~~l~~G~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~-~~~~v~l~~g~r~~~~~~~~~el~~ 153 (232)
T PRK08051 75 AVMERILKDGEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQG-PNRPITLYWGGREEDHLYDLDELEA 153 (232)
T ss_pred HHHHHcCCCCEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC-CCCcEEEEEEeccHHHhhhhHHHHH
Confidence 65 699999999999999998776555678999999999999999999998864 4468999999999999999999999
Q ss_pred HHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhC
Q 042788 213 FATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHC 250 (258)
Q Consensus 213 l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~ 250 (258)
+++++++ ++++.+++++++.|.+..|++++.+++...
T Consensus 154 l~~~~~~-~~~~~~~~~~~~~~~~~~g~v~~~l~~~~~ 190 (232)
T PRK08051 154 LALKHPN-LHFVPVVEQPEEGWQGKTGTVLTAVMQDFG 190 (232)
T ss_pred HHHHCCC-cEEEEEeCCCCCCcccceeeehHHHHhhcc
Confidence 9999988 999999998888898889999987665443
No 23
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=100.00 E-value=2.4e-34 Score=244.69 Aligned_cols=183 Identities=17% Similarity=0.221 Sum_probs=156.6
Q ss_pred CcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccc
Q 042788 53 NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA 132 (258)
Q Consensus 53 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S 132 (258)
.|.+++|++++.+++++++++|+.+. ..|+||||+.|.++ .+|....|+|||+|.|.+ +.++|+||.+++|.+|
T Consensus 3 ~~~~~~V~~i~~~t~~v~~l~l~~~~----~~~~pGQfv~l~~~-~~g~~~~R~ySias~p~~-~~l~~~ik~~~~G~~S 76 (248)
T PRK10926 3 DWVTGKVTKVQNWTDALFSLTVHAPV----DPFTAGQFTKLGLE-IDGERVQRAYSYVNAPDN-PDLEFYLVTVPEGKLS 76 (248)
T ss_pred ccEEEEEEEEEEcCCCeEEEEEeCCC----CCCCCCCEEEEEEe-cCCcEEEeeecccCCCCC-CeEEEEEEEeCCCCcC
Confidence 68899999999999999999998752 36999999999987 557677899999999865 5899999999999999
Q ss_pred cccccCCCCCEEEEeccc-ceeeecCC-CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHH
Q 042788 133 HHFREMHEGEYLPVKGPK-GRLKYKVG-QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDEL 210 (258)
Q Consensus 133 ~~L~~l~~Gd~v~v~gP~-G~f~~~~~-~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL 210 (258)
+||+++++||+|.++||. |.|.++.. ..++++||||||||||+++|++++.... ...+++|+|++|+.+|++|.+||
T Consensus 77 ~~L~~l~~Gd~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~-~~~~v~l~~g~r~~~d~~~~~el 155 (248)
T PRK10926 77 PRLAALKPGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE-RFKNLVLVHAARYAADLSYLPLM 155 (248)
T ss_pred hHHHhCCCCCEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC-CCCcEEEEEeCCcHHHHHHHHHH
Confidence 999999999999999987 44665533 3379999999999999999999987543 44689999999999999999999
Q ss_pred HHHHhhCCCCeEEEEEEcCCCCCCCCccccccH
Q 042788 211 DSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSK 243 (258)
Q Consensus 211 ~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~ 243 (258)
++|++++|++++++.++++++. +.+..|++++
T Consensus 156 ~~l~~~~~~~~~v~~~~s~~~~-~~~~~G~v~~ 187 (248)
T PRK10926 156 QELEQRYEGKLRIQTVVSRETA-PGSLTGRVPA 187 (248)
T ss_pred HHHHHhCcCCEEEEEEECCCCC-CCCcCCccch
Confidence 9999988744999999998542 3345788876
No 24
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=100.00 E-value=1.2e-34 Score=245.59 Aligned_cols=182 Identities=18% Similarity=0.286 Sum_probs=159.6
Q ss_pred EEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccccc
Q 042788 58 KLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFRE 137 (258)
Q Consensus 58 ~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~ 137 (258)
+|++++.+++++++++|+.+. ...|+||||+.|+++..++...+|+|||++.+.+ +.++|.||++++|.+|+||++
T Consensus 1 ~v~~~~~~t~~~~~~~l~~~~---~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~i~~~i~~~~~G~~s~~l~~ 76 (241)
T cd06195 1 TVLKRRDWTDDLFSFRVTRDI---PFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYE-ENLEFYIILVPDGPLTPRLFK 76 (241)
T ss_pred CeEEEEEcCCCEEEEEEcCCC---CCccCCCCeEEEeccCCCCCeeeecccccCCCCC-CeEEEEEEEecCCCCchHHhc
Confidence 478999999999999999876 3789999999999983336678899999998876 899999999889999999999
Q ss_pred CCCCCEEEEe-cccceeeecCC-CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHh
Q 042788 138 MHEGEYLPVK-GPKGRLKYKVG-QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT 215 (258)
Q Consensus 138 l~~Gd~v~v~-gP~G~f~~~~~-~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~ 215 (258)
+++||.|.+. ||+|.|.+++. ..++++||||||||||++++++++.... ...+++++|++|+.+|+++.+||+++++
T Consensus 77 l~~Gd~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~-~~~~v~l~~~~r~~~d~~~~~el~~l~~ 155 (241)
T cd06195 77 LKPGDTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE-RFDKIVLVHGVRYAEELAYQDEIEALAK 155 (241)
T ss_pred CCCCCEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC-CCCcEEEEEccCCHHHhhhHHHHHHHHh
Confidence 9999999999 99999987654 4689999999999999999999998652 4468999999999999999999999988
Q ss_pred h-CCCCeEEEEEEcCCCCCCCCccccccHHHH
Q 042788 216 N-SPNRFKVYYVLSQPTEVWNGGIGHVSKEMI 246 (258)
Q Consensus 216 ~-~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l 246 (258)
+ +++ ++++++++++++.| +..|++++.+.
T Consensus 156 ~~~~~-~~~~~~~s~~~~~~-~~~g~v~~~l~ 185 (241)
T cd06195 156 QYNGK-FRYVPIVSREKENG-ALTGRIPDLIE 185 (241)
T ss_pred hcCCC-EEEEEEECcCCccC-CCceEhHHhhh
Confidence 7 455 99999999887777 67899987543
No 25
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=100.00 E-value=2.4e-34 Score=242.34 Aligned_cols=190 Identities=23% Similarity=0.447 Sum_probs=164.6
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF 135 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L 135 (258)
+++|++++.+++++++++|+.+.+. ...|+||||+.++++ +....|+|||++.|.+.+.++|+||.+++|.+|.+|
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~---~~~~~r~ySi~s~~~~~~~l~l~vk~~~~G~~s~~l 77 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPE-PIKFFAGQYVDITVP---GTEETRSFSMANTPADPGRLEFIIKKYPGGLFSSFL 77 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCC-cCCcCCCCeEEEEcC---CCCcccccccCCCCCCCCEEEEEEEECCCCchhhHH
Confidence 5799999999999999999987653 468999999999987 333679999999997778999999998889999999
Q ss_pred c-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHH
Q 042788 136 R-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFA 214 (258)
Q Consensus 136 ~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~ 214 (258)
. .+++||+|.+.||+|.|.+.....++++|||||+||||++++++++...+ ...+++++|++|+.+++++.+||++++
T Consensus 78 ~~~l~~G~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~ 156 (232)
T cd06212 78 DDGLAVGDPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG-SDRPVRFFYGARTARDLFYLEEIAALG 156 (232)
T ss_pred hhcCCCCCEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC-CCCcEEEEEeccchHHhccHHHHHHHH
Confidence 7 49999999999999998776555689999999999999999999999874 446899999999999999999999999
Q ss_pred hhCCCCeEEEEEEcCCC--CCCCCccccccHHHHhhhCCC
Q 042788 215 TNSPNRFKVYYVLSQPT--EVWNGGIGHVSKEMIQMHCPT 252 (258)
Q Consensus 215 ~~~~~~~~v~~~~s~~~--~~~~~~~G~i~~~~l~~~~~~ 252 (258)
+++++ ++++++++++. +.|.+..|++++. +.+.+++
T Consensus 157 ~~~~~-~~~~~~~s~~~~~~~~~~~~g~~~~~-~~~~~~~ 194 (232)
T cd06212 157 EKIPD-FTFIPALSESPDDEGWSGETGLVTEV-VQRNEAT 194 (232)
T ss_pred HhCCC-EEEEEEECCCCCCCCCcCCcccHHHH-HHhhccC
Confidence 88887 99998998764 5677788999874 5555544
No 26
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=100.00 E-value=9.4e-34 Score=239.91 Aligned_cols=193 Identities=24% Similarity=0.396 Sum_probs=169.2
Q ss_pred EEEEEEEEEEeCCCEeEEEEECCCCCc-cCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccc
Q 042788 55 KEFKLTKRTPISHNTAKFRFALPKSTS-ILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAH 133 (258)
Q Consensus 55 ~~~~v~~~~~~~~~~~~l~l~~~~~~~-~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~ 133 (258)
+.++|++++.+++++++++|+.+.+.. ...|+||||+.|.++ ..|....|+||+++.+.+ +.++|+|+.+++|.+|.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~-~~g~~~~r~ysi~s~~~~-~~l~~~i~~~~~G~~s~ 79 (241)
T cd06214 2 HPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVP-IDGEEVRRSYSICSSPGD-DELRITVKRVPGGRFSN 79 (241)
T ss_pred ceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEee-cCCCeeeeeeeecCCCCC-CcEEEEEEEcCCCccch
Confidence 578999999999999999999986521 257999999999998 556678899999998766 48999999988999999
Q ss_pred ccc-cCCCCCEEEEecccceeeecCC-CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHH
Q 042788 134 HFR-EMHEGEYLPVKGPKGRLKYKVG-QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD 211 (258)
Q Consensus 134 ~L~-~l~~Gd~v~v~gP~G~f~~~~~-~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~ 211 (258)
||. ++++||++.+.||+|.|.+.++ ..++++||||||||||++++++++.... ...+++++|++|+.+++++.+||+
T Consensus 80 ~l~~~~~~G~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~ 158 (241)
T cd06214 80 WANDELKAGDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALARE-PASRVTLVYGNRTEASVIFREELA 158 (241)
T ss_pred hHHhccCCCCEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcC-CCCcEEEEEEeCCHHHhhHHHHHH
Confidence 996 8999999999999999887765 5689999999999999999999998764 357899999999999999999999
Q ss_pred HHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhC
Q 042788 212 SFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHC 250 (258)
Q Consensus 212 ~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~ 250 (258)
++++.+++++++.+++++++..|.+..|+++++.+.+.+
T Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (241)
T cd06214 159 DLKARYPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALL 197 (241)
T ss_pred HHHHhCcCceEEEEEecCCCCCcccccCccCHHHHHHhh
Confidence 999888866999999998777787788999987776654
No 27
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=8.6e-34 Score=238.23 Aligned_cols=186 Identities=22% Similarity=0.367 Sum_probs=159.3
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF 135 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L 135 (258)
+++|++++.+++++++++|+.++. ..|+||||+.|+++ +....|+|||++.|.+.+.++|+||..++|.+|++|
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~---~~~~pGQ~~~l~~~---~~~~~r~ysi~s~~~~~~~l~~~vk~~~~G~~s~~l 75 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRP---IAYKAGQYAELTLP---GLPAARSYSFANAPQGDGQLSFHIRKVPGGAFSGWL 75 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCC---CCcCCCCEEEEEeC---CCCcccccccCCCCCCCCEEEEEEEECCCCcchHHH
Confidence 578999999999999999998653 68999999999987 223689999999987778999999998889999998
Q ss_pred -ccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHH
Q 042788 136 -REMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFA 214 (258)
Q Consensus 136 -~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~ 214 (258)
..+++||+|.++||+|.|.+.. ..++++||||||||||++++++++..++ ..++++++|++|+.+|+++.+||++++
T Consensus 76 ~~~l~~G~~v~i~gP~G~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~~~-~~~~i~l~~~~r~~~~~~~~~~l~~l~ 153 (227)
T cd06213 76 FGADRTGERLTVRGPFGDFWLRP-GDAPILCIAGGSGLAPILAILEQARAAG-TKRDVTLLFGARTQRDLYALDEIAAIA 153 (227)
T ss_pred HhcCCCCCEEEEeCCCcceEeCC-CCCcEEEEecccchhHHHHHHHHHHhcC-CCCcEEEEEeeCCHHHhccHHHHHHHH
Confidence 5799999999999999988754 3478999999999999999999998864 456799999999999999999999999
Q ss_pred hhCCCCeEEEEEEcCCC--CCCCCccccccHHHHhhhC
Q 042788 215 TNSPNRFKVYYVLSQPT--EVWNGGIGHVSKEMIQMHC 250 (258)
Q Consensus 215 ~~~~~~~~v~~~~s~~~--~~~~~~~G~i~~~~l~~~~ 250 (258)
++++.+++++.++++++ ..|.+..|++++. +.+..
T Consensus 154 ~~~~~~~~~~~~~s~~~~~~~~~g~~g~v~~~-l~~~~ 190 (227)
T cd06213 154 ARWRGRFRFIPVLSEEPADSSWKGARGLVTEH-IAEVL 190 (227)
T ss_pred HhccCCeEEEEEecCCCCCCCccCCcccHHHH-HHhhc
Confidence 77544499999888754 3477888998875 44443
No 28
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=7.3e-34 Score=237.97 Aligned_cols=182 Identities=24% Similarity=0.413 Sum_probs=160.3
Q ss_pred EEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccccc-
Q 042788 59 LTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFRE- 137 (258)
Q Consensus 59 v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~- 137 (258)
|++++.+++++++++|+.++. ..|+||||+.|+++ ..+ ...|+|||+|.+.+.+.++|+||..++|.+|+||++
T Consensus 1 v~~~~~~~~~~~~~~l~~~~~---~~~~pGq~i~l~~~-~~~-~~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~ 75 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQP---LPFWAGQYVNVTVP-GRP-RTWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDE 75 (224)
T ss_pred CeeeeecCCCEEEEEEEeCCC---CCcCCCceEEEEcC-CCC-CcceeccccCCCCCCCEEEEEEEeCCCCcchHHHhhc
Confidence 468899999999999998875 78999999999987 222 367999999998877899999999888999999976
Q ss_pred CCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhC
Q 042788 138 MHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNS 217 (258)
Q Consensus 138 l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~ 217 (258)
+++||+|.+.||+|.|.+.+...++++|||||+||||++++++++..++ ...++.++|++|+.+++++.++|+++++++
T Consensus 76 l~~G~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~-~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~ 154 (224)
T cd06187 76 LKVGDRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG-EPRPVHLFFGARTERDLYDLEGLLALAARH 154 (224)
T ss_pred CccCCEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC-CCCCEEEEEecCChhhhcChHHHHHHHHhC
Confidence 9999999999999998876655688999999999999999999998864 446899999999999999999999999998
Q ss_pred CCCeEEEEEEcCCCCCCCCccccccHHHHh
Q 042788 218 PNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ 247 (258)
Q Consensus 218 ~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~ 247 (258)
++ ++++++++++++.|.+..|++++.+.+
T Consensus 155 ~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~ 183 (224)
T cd06187 155 PW-LRVVPVVSHEEGAWTGRRGLVTDVVGR 183 (224)
T ss_pred CC-eEEEEEeCCCCCccCCCcccHHHHHHH
Confidence 88 999999988776688888999886543
No 29
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=100.00 E-value=8.4e-34 Score=238.95 Aligned_cols=186 Identities=27% Similarity=0.452 Sum_probs=159.2
Q ss_pred EEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc-c
Q 042788 59 LTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR-E 137 (258)
Q Consensus 59 v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~-~ 137 (258)
|++++.+++++++++|+.++. ..|+||||+.|+++ +....|+|||++.+.+.+.++|+||..++|.+|.+|+ .
T Consensus 1 ~~~~~~~t~~~~~~~l~~~~~---~~~~pGQ~v~l~~~---~~~~~r~ySi~s~~~~~~~~~~~vk~~~~G~~s~~l~~~ 74 (232)
T cd06190 1 LVDVRELTHDVAEFRFALDGP---ADFLPGQYALLALP---GVEGARAYSMANLANASGEWEFIIKRKPGGAASNALFDN 74 (232)
T ss_pred CCceEEcCCCEEEEEEEcCCc---cccCCCCEEEEECC---CCCcccCccCCcCCCCCCEEEEEEEEcCCCcchHHHhhc
Confidence 467889999999999998764 57999999999987 2335799999999877789999999988899999997 4
Q ss_pred CCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCC-CCCCeEEEEEEeCCCcccccHHHHHHHHhh
Q 042788 138 MHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENP-KDKTNVHLIYANVTVGDILLKDELDSFATN 216 (258)
Q Consensus 138 l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~-~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~ 216 (258)
+++||+|.++||+|.+.+.++..++++|||||+||||++++++++.... ....+++++|++|+.+++++.+||+++++.
T Consensus 75 ~~~g~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~l~~~ 154 (232)
T cd06190 75 LEPGDELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGRTPSDLCALDELSALVAL 154 (232)
T ss_pred CCCCCEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeecCHHHHhhHHHHHHHHHh
Confidence 7999999999999997765555689999999999999999999998752 234789999999999999999999999988
Q ss_pred CCCCeEEEEEEcCCCC----CCCCccccccHHHHhhhCCC
Q 042788 217 SPNRFKVYYVLSQPTE----VWNGGIGHVSKEMIQMHCPT 252 (258)
Q Consensus 217 ~~~~~~v~~~~s~~~~----~~~~~~G~i~~~~l~~~~~~ 252 (258)
+++ ++++++++++.+ .|.+..|++++ .+++.+++
T Consensus 155 ~~~-~~~~~~~s~~~~~~~~~~~~~~g~v~~-~l~~~~~~ 192 (232)
T cd06190 155 GAR-LRVTPAVSDAGSGSAAGWDGPTGFVHE-VVEATLGD 192 (232)
T ss_pred CCC-EEEEEEeCCCCCCcCCCccCCcCcHHH-HHHhhccC
Confidence 777 999999887643 47788899987 56666544
No 30
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=1.2e-33 Score=247.36 Aligned_cols=191 Identities=19% Similarity=0.246 Sum_probs=159.8
Q ss_pred CCCcEEEEEEEEEEeC-----CCEeEEEEECCCCCccCCCCCCcEEEEEEecC----CCC-eeeeeccccccCCCC----
Q 042788 51 PENFKEFKLTKRTPIS-----HNTAKFRFALPKSTSILGLPVGQHILCRGKDS----EGN-EVIRPYTPITLDSDI---- 116 (258)
Q Consensus 51 ~~~~~~~~v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~----~g~-~~~R~ySi~s~~~~~---- 116 (258)
+....+++|++++.++ +++++++|+.+.. +.|.||||+.|.++.. +|. ...|+|||+|.|.++
T Consensus 21 ~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~---~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~ 97 (307)
T PLN03116 21 PKAPYTATIVSVERIVGPKAPGETCHIVIDHGGN---VPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDG 97 (307)
T ss_pred CCCCEEEEEEeeEEcccCCCCCceEEEEEecCCC---CceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCC
Confidence 3445589999999999 8999999998754 7899999999976521 122 247999999998432
Q ss_pred CEEEEEEEEe-------------cCCccccccccCCCCCEEEEecccceeeecC--CCCceEEEEEcCccHHHHHHHHHH
Q 042788 117 GYFELVVKMY-------------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKV--GQARAFGMIAGGTGITPMFQLTRA 181 (258)
Q Consensus 117 ~~l~~~Vk~~-------------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~--~~~~~vvliagGtGItp~~sil~~ 181 (258)
..++|+||+. ++|.+|.||+++++||+|.++||+|.|.+.+ +..+++|||||||||||+++|+++
T Consensus 98 ~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~ 177 (307)
T PLN03116 98 KTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRR 177 (307)
T ss_pred CEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCCEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHH
Confidence 3799999986 6899999998899999999999999977632 345789999999999999999998
Q ss_pred HHhCCC----CCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788 182 ILENPK----DKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE 244 (258)
Q Consensus 182 l~~~~~----~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~ 244 (258)
++.... ...+++|+|++|+.+|++|.+||++|++++|++|+++.+++++++.|.+..|++++.
T Consensus 178 ~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~ 244 (307)
T PLN03116 178 MFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDK 244 (307)
T ss_pred HHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCCccchhhH
Confidence 876431 125799999999999999999999999999844999999999888888778888874
No 31
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=100.00 E-value=1.2e-33 Score=245.41 Aligned_cols=175 Identities=21% Similarity=0.358 Sum_probs=148.9
Q ss_pred CCCCcEEEEEEEEEEeCCCEeEEEEECCCC--CccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEec
Q 042788 50 DPENFKEFKLTKRTPISHNTAKFRFALPKS--TSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYP 127 (258)
Q Consensus 50 ~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~--~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~ 127 (258)
+|..+++++|++++++++++..++|+...+ .....|+||||+.|+++ ..+ .||||++|.|.+++.++|+||.
T Consensus 1 ~~~~~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~-~~~---~~pySias~p~~~~~l~l~Ik~-- 74 (289)
T PRK08345 1 NPYALHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIP-GVG---EVPISICSSPTRKGFFELCIRR-- 74 (289)
T ss_pred CCcCceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcC-CCC---ceeeEecCCCCCCCEEEEEEEe--
Confidence 356678999999999999977777775432 22467999999999987 323 3899999998777899999998
Q ss_pred CCccccccccCCCCCEEEEecccce-eeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCccccc
Q 042788 128 KGRMAHHFREMHEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILL 206 (258)
Q Consensus 128 ~G~~S~~L~~l~~Gd~v~v~gP~G~-f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~ 206 (258)
.|.+|++|+++++||+|.++||+|. |..+....++++||||||||||+++|+++++.+.....+++|+|++|+.+|++|
T Consensus 75 ~G~~S~~L~~l~~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~~~~v~l~~~~r~~~d~~~ 154 (289)
T PRK08345 75 AGRVTTVIHRLKEGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNITLIYGAKYYEDLLF 154 (289)
T ss_pred CChHHHHHHhCCCCCEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCCCCCcEEEEEecCCHHHhhH
Confidence 6999999999999999999999998 655444457899999999999999999998876434578999999999999999
Q ss_pred HHHHHHHHhhCCCCeEEEEEEcCCC
Q 042788 207 KDELDSFATNSPNRFKVYYVLSQPT 231 (258)
Q Consensus 207 ~~eL~~l~~~~~~~~~v~~~~s~~~ 231 (258)
.|||++|++++++ +++++++++++
T Consensus 155 ~deL~~l~~~~~~-~~~~~~~s~~~ 178 (289)
T PRK08345 155 YDELIKDLAEAEN-VKIIQSVTRDP 178 (289)
T ss_pred HHHHHHHHhcCCC-EEEEEEecCCC
Confidence 9999999888888 99999999753
No 32
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=3.5e-33 Score=242.23 Aligned_cols=192 Identities=21% Similarity=0.299 Sum_probs=161.1
Q ss_pred CCCcEEEEEEEEEEeC-----CCEeEEEEECCCCCccCCCCCCcEEEEEEecC---CCC-eeeeeccccccCCC----CC
Q 042788 51 PENFKEFKLTKRTPIS-----HNTAKFRFALPKSTSILGLPVGQHILCRGKDS---EGN-EVIRPYTPITLDSD----IG 117 (258)
Q Consensus 51 ~~~~~~~~v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~---~g~-~~~R~ySi~s~~~~----~~ 117 (258)
+.....++|++++.++ +++++++|+.+. ...|+||||+.|.++.. +|. ...|+|||+|.|.+ ++
T Consensus 5 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~ 81 (286)
T cd06208 5 PKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGG---KLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGK 81 (286)
T ss_pred CCCCeEEEEEeceeccCCCCCcceEEEEEeCCC---cccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCC
Confidence 4556679999999999 699999999854 37899999999986510 122 34799999998743 47
Q ss_pred EEEEEEEEecC----------CccccccccCCCCCEEEEecccceeeecC-CCCceEEEEEcCccHHHHHHHHHHHHhCC
Q 042788 118 YFELVVKMYPK----------GRMAHHFREMHEGEYLPVKGPKGRLKYKV-GQARAFGMIAGGTGITPMFQLTRAILENP 186 (258)
Q Consensus 118 ~l~~~Vk~~~~----------G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~-~~~~~vvliagGtGItp~~sil~~l~~~~ 186 (258)
.++|+||..+. |.+|.||+++++||+|.+.||+|.|.+.+ ...++++||||||||||++++++++....
T Consensus 82 ~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~ 161 (286)
T cd06208 82 TLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREK 161 (286)
T ss_pred EEEEEEEEEEEecCCCCceeccchHHHHhhCCCCCEEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhh
Confidence 89999999765 99999999999999999999999976543 33468999999999999999999988651
Q ss_pred ----CCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHH
Q 042788 187 ----KDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEM 245 (258)
Q Consensus 187 ----~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~ 245 (258)
....+++|+|++|+.++++|.++|++++++++++++++++++++++.|.+..|++++.+
T Consensus 162 ~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i 224 (286)
T cd06208 162 HADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQDRI 224 (286)
T ss_pred hcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCceehhhHH
Confidence 23467999999999999999999999999988669999999998888888889988754
No 33
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=100.00 E-value=1.3e-32 Score=276.19 Aligned_cols=213 Identities=29% Similarity=0.598 Sum_probs=186.0
Q ss_pred ccCCCCCCCCCCcEEEEEEEEE---EeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCE
Q 042788 42 IKKSRGSLDPENFKEFKLTKRT---PISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGY 118 (258)
Q Consensus 42 ~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~ 118 (258)
.+..+..+++.+|.+++|++++ ..+++++.++|+.|+....+.|.|||||.|+++ .++....|+|||+|.|.+.+.
T Consensus 902 ~~~~~~~~~~~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~-~~g~~~~R~YS~~S~p~~~~~ 980 (1167)
T PTZ00306 902 LQKKKYGLSKDKWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGD-WDGQQLIGYYSPITLPDDLGV 980 (1167)
T ss_pred HhccCcccCCCceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEee-eCCeEEEEEeccCCCCCCCCe
Confidence 5567889999999999999998 468999999999987644568999999999987 567778899999999987789
Q ss_pred EEEEEEEecCCccccccccCCCCCEEEEecccc----------eeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCC--
Q 042788 119 FELVVKMYPKGRMAHHFREMHEGEYLPVKGPKG----------RLKYKVGQARAFGMIAGGTGITPMFQLTRAILENP-- 186 (258)
Q Consensus 119 l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G----------~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~-- 186 (258)
++|+|| .++|.+|+||+++++||+|.++||+| .|.++....++++||||||||||+++|++++++++
T Consensus 981 i~l~Vr-~~~G~~S~~L~~l~~Gd~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~~ 1059 (1167)
T PTZ00306 981 ISILAR-GDKGTLKEWISALRPGDSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPYV 1059 (1167)
T ss_pred EEEEEE-cCCChhHHHHhhCCCCCEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCccc
Confidence 999998 46899999999999999999999877 35555555689999999999999999999998764
Q ss_pred CCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCCCCCC
Q 042788 187 KDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPAPD 256 (258)
Q Consensus 187 ~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~~~~~ 256 (258)
.+.++++|+|++|+.++++|++||++|++++|++|++++++++++++|.+..|++++.++++.++++..+
T Consensus 1060 ~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~ 1129 (1167)
T PTZ00306 1060 DSIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKD 1129 (1167)
T ss_pred CCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCC
Confidence 1346899999999999999999999999999988999999999888898889999999999888765433
No 34
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=100.00 E-value=6.8e-33 Score=231.46 Aligned_cols=176 Identities=27% Similarity=0.481 Sum_probs=155.6
Q ss_pred EEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccccCCC
Q 042788 61 KRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHE 140 (258)
Q Consensus 61 ~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~l~~ 140 (258)
+++.++++++.++|+.++ ...|+||||+.|.++ ..+....|+|||++.|.+.+.++|+||.+++|.+|+||+++++
T Consensus 2 ~~~~~~~~~~~~~l~~~~---~~~~~pGQ~v~l~~~-~~~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~~s~~l~~~~~ 77 (223)
T cd00322 2 ATEDVTDDVRLFRLQLPN---GFSFKPGQYVDLHLP-GDGRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLHDLKP 77 (223)
T ss_pred ceEEecCCeEEEEEecCC---CCCcCCCcEEEEEec-CCCCcceeeeeccCCCCCCCeEEEEEEEeCCCchhhHHhcCCC
Confidence 467889999999999876 378999999999998 5556788999999999777899999999888999999999999
Q ss_pred CCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCC
Q 042788 141 GEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNR 220 (258)
Q Consensus 141 Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~ 220 (258)
||++.++||+|.|.......++++||||||||||++++++++.... ...+++++|++|+.+++++.+||+++++.+++
T Consensus 78 G~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~- 155 (223)
T cd00322 78 GDEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK-PGGEITLLYGARTPADLLFLDELEELAKEGPN- 155 (223)
T ss_pred CCEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC-CCCcEEEEEecCCHHHhhHHHHHHHHHHhCCC-
Confidence 9999999999998655556789999999999999999999998863 44789999999999999999999999998877
Q ss_pred eEEEEEEcCCCCCCCCcccccc
Q 042788 221 FKVYYVLSQPTEVWNGGIGHVS 242 (258)
Q Consensus 221 ~~v~~~~s~~~~~~~~~~G~i~ 242 (258)
++++++++++...+.+..+++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~ 177 (223)
T cd00322 156 FRLVLALSRESEAKLGPGGRID 177 (223)
T ss_pred eEEEEEecCCCCCCCcccceee
Confidence 9999999988777766666655
No 35
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=100.00 E-value=5.3e-33 Score=252.21 Aligned_cols=195 Identities=21% Similarity=0.373 Sum_probs=166.5
Q ss_pred CcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecC----------------------------CCCeee
Q 042788 53 NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDS----------------------------EGNEVI 104 (258)
Q Consensus 53 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~----------------------------~g~~~~ 104 (258)
...+++|++++.+++++++++|+.++.. ...|+||||+.|+++.. .+....
T Consensus 132 ~~~~~~V~~~~~ls~~i~~l~l~~~~~~-~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (409)
T PRK05464 132 KKWECTVISNDNVATFIKELVLKIPEGE-EVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVI 210 (409)
T ss_pred eEEEEEEEEcccCCchhheEEEecCCCC-cccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCcee
Confidence 3347999999999999999999998542 35899999999998621 123568
Q ss_pred eeccccccCCCCCEEEEEEEE---------ecCCccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHH
Q 042788 105 RPYTPITLDSDIGYFELVVKM---------YPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPM 175 (258)
Q Consensus 105 R~ySi~s~~~~~~~l~~~Vk~---------~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~ 175 (258)
|+|||+|.|.+++.++|+||. .++|.+|.||+++++||+|.+.||+|.|.+.. ..++++||||||||||+
T Consensus 211 R~ySias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~-~~~~ivlIAgGtGIaP~ 289 (409)
T PRK05464 211 RAYSMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGDKVTISGPFGEFFAKD-TDAEMVFIGGGAGMAPM 289 (409)
T ss_pred eeeccCCCCCCCCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCCEEEEEccccCcEecC-CCceEEEEEeccChhHH
Confidence 999999999877899999997 36799999999999999999999999987653 45899999999999999
Q ss_pred HHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCC--CCCCCCccccccHHHHhhhC
Q 042788 176 FQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQP--TEVWNGGIGHVSKEMIQMHC 250 (258)
Q Consensus 176 ~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~--~~~~~~~~G~i~~~~l~~~~ 250 (258)
++++++++++.....+++|+|++|+.++++|.+||+++++++|+ ++++++++++ ++.|.+..|++++.+.++.+
T Consensus 290 ~sml~~~l~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~l 365 (409)
T PRK05464 290 RSHIFDQLKRLKSKRKISFWYGARSLREMFYVEDFDQLAAENPN-FKWHVALSDPLPEDNWTGYTGFIHNVLYENYL 365 (409)
T ss_pred HHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHHHhCCC-eEEEEEEcCCCCCCCCCCccceeCHHHHHhhh
Confidence 99999887764345689999999999999999999999999998 9999998865 35688889999987766554
No 36
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=6.3e-33 Score=231.49 Aligned_cols=182 Identities=27% Similarity=0.483 Sum_probs=154.2
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecC-Cccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPK-GRMAHH 134 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~-G~~S~~ 134 (258)
+++|++++.+++++++++|+.++. ..|+||||+.|+++..++....|+|||+|.+.+ +.++|+||.+++ |.+|++
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~---~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~l~~~vk~~~~~g~~s~~ 77 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEG---YDFTPGQATEVAIDKPGWRDEKRPFTFTSLPED-DVLEFVIKSYPDHDGVTEQ 77 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCc---CCCCCCCEEEEEeeCCCCCccccccccccCCCC-CeEEEEEEEcCCCCcHhHH
Confidence 578999999999999999998764 689999999999873222357899999999875 899999999865 788999
Q ss_pred cccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHH
Q 042788 135 FREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFA 214 (258)
Q Consensus 135 L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~ 214 (258)
|+++++||++.++||+|.|... ++++||||||||||++++++++...+ ...+++|+|++|+.++++|.+||+++.
T Consensus 78 l~~l~~G~~v~i~gP~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~ 152 (218)
T cd06196 78 LGRLQPGDTLLIEDPWGAIEYK----GPGVFIAGGAGITPFIAILRDLAAKG-KLEGNTLIFANKTEKDIILKDELEKML 152 (218)
T ss_pred HHhCCCCCEEEEECCccceEec----CceEEEecCCCcChHHHHHHHHHhCC-CCceEEEEEecCCHHHHhhHHHHHHhh
Confidence 9999999999999999998653 57899999999999999999998863 446899999999999999999999984
Q ss_pred hhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCC
Q 042788 215 TNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT 252 (258)
Q Consensus 215 ~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~ 252 (258)
+ +++++++++++.. ....|+++.+.+++.+++
T Consensus 153 ----~-~~~~~~~s~~~~~-~~~~g~~~~~~l~~~~~~ 184 (218)
T cd06196 153 ----G-LKFINVVTDEKDP-GYAHGRIDKAFLKQHVTD 184 (218)
T ss_pred ----c-ceEEEEEcCCCCC-CeeeeEECHHHHHHhcCC
Confidence 3 7777788875432 225799998888877654
No 37
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=1.3e-32 Score=244.07 Aligned_cols=192 Identities=20% Similarity=0.258 Sum_probs=158.5
Q ss_pred CCcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEec--CCCCe-eeeeccccccCC----CCCEE
Q 042788 52 ENFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGKD--SEGNE-VIRPYTPITLDS----DIGYF 119 (258)
Q Consensus 52 ~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~--~~g~~-~~R~ySi~s~~~----~~~~l 119 (258)
..-..++|+++..++. ++++++|+.+. .+.|.||||+.|..+. .+|.. ..|+|||+|.+. +++.+
T Consensus 88 ~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~---~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l 164 (367)
T PLN03115 88 KEPYTGRCLLNTKITGDDAPGETWHMVFSTEG---EIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTV 164 (367)
T ss_pred CCCeEEEEEeecccccCCCCCceEEEEEcCCC---CCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEE
Confidence 3345789999999977 89999998665 3789999999998751 23433 579999999873 24689
Q ss_pred EEEEEEe---------cCCccccccccCCCCCEEEEecccceeeecC-CCCceEEEEEcCccHHHHHHHHHHHHhCCCC-
Q 042788 120 ELVVKMY---------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKV-GQARAFGMIAGGTGITPMFQLTRAILENPKD- 188 (258)
Q Consensus 120 ~~~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~-~~~~~vvliagGtGItp~~sil~~l~~~~~~- 188 (258)
+|+||+. ..|.+|+||+++++||+|.+.||+|.|.+.+ +..++++||||||||||++++++++......
T Consensus 165 ~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~ 244 (367)
T PLN03115 165 SLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDD 244 (367)
T ss_pred EEEEEEEEeecCCCccCCeehHhhHhhCCCcCEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhcccc
Confidence 9999975 3688999999999999999999999965433 4456899999999999999999987543211
Q ss_pred ---CCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHH
Q 042788 189 ---KTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMI 246 (258)
Q Consensus 189 ---~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l 246 (258)
..+++|+|++|+.+|++|.+||+++++++|++|++++++|++++.|.|..|++++.+.
T Consensus 245 ~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~ 305 (367)
T PLN03115 245 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQTRMA 305 (367)
T ss_pred ccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCcceeehhHHH
Confidence 3579999999999999999999999999885599999999999889888999987543
No 38
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=100.00 E-value=6.9e-33 Score=251.14 Aligned_cols=195 Identities=20% Similarity=0.378 Sum_probs=165.7
Q ss_pred CcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecC----------------------------CCCeee
Q 042788 53 NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDS----------------------------EGNEVI 104 (258)
Q Consensus 53 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~----------------------------~g~~~~ 104 (258)
...+++|++++.+++++++++|+.++.. ...|+||||+.++++.. .+....
T Consensus 128 ~~~~~~v~~~~~~s~~i~~l~l~~~~~~-~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (405)
T TIGR01941 128 KKWECEVISNDNVATFIKELVLKLPDGE-SVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETV 206 (405)
T ss_pred ceeeeEEEEcccccchhheEEEecCCCc-eeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccc
Confidence 3347999999999999999999987643 35899999999998721 123467
Q ss_pred eeccccccCCCCCEEEEEEEE---------ecCCccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHH
Q 042788 105 RPYTPITLDSDIGYFELVVKM---------YPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPM 175 (258)
Q Consensus 105 R~ySi~s~~~~~~~l~~~Vk~---------~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~ 175 (258)
|+|||+|.|.+++.++|+||. .++|.+|.||+++++||+|.++||+|.|.+.+ ..++++||||||||||+
T Consensus 207 R~ySias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~~-~~~~lvlIAgGtGIaP~ 285 (405)
T TIGR01941 207 RAYSMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGDKVTISGPFGEFFAKD-TDAEMVFIGGGAGMAPM 285 (405)
T ss_pred eeecCCCCCCCCCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcCEEEEEeccCCCeecC-CCCCEEEEecCcCcchH
Confidence 999999999877899999997 47799999999999999999999999987754 45789999999999999
Q ss_pred HHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCC--CCCCCCccccccHHHHhhhC
Q 042788 176 FQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQP--TEVWNGGIGHVSKEMIQMHC 250 (258)
Q Consensus 176 ~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~--~~~~~~~~G~i~~~~l~~~~ 250 (258)
++|+++++.+.....+++++|++|+.++++|.+||+++++++|+ ++++++++++ ++.|.+..|++++.+.++.+
T Consensus 286 lsmi~~~l~~~~~~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~l 361 (405)
T TIGR01941 286 RSHIFDQLKRLKSKRKISFWYGARSLREMFYQEDFDQLEAENPN-FVWHVALSDPQPEDNWTGYTGFIHNVLYENYL 361 (405)
T ss_pred HHHHHHHHhcCCCCCeEEEEEecCCHHHHhHHHHHHHHHHhCCC-eEEEEEeCCCCccCCCCCccceeCHHHHHhhh
Confidence 99999877653345689999999999999999999999999998 9999998864 36688889999887655544
No 39
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=100.00 E-value=1.1e-32 Score=235.11 Aligned_cols=183 Identities=23% Similarity=0.440 Sum_probs=156.4
Q ss_pred EEEEEEeCCCEeEEEEECCCCC-ccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccccc
Q 042788 59 LTKRTPISHNTAKFRFALPKST-SILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFRE 137 (258)
Q Consensus 59 v~~~~~~~~~~~~l~l~~~~~~-~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~ 137 (258)
|++++.+++++..++|+.+.+. ....|+||||+.|+++ ..+ .|+|||++.|.+++.++|+||. .|.+|++|++
T Consensus 1 v~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~-~~~---~~pySi~s~~~~~~~l~~~Ik~--~G~~S~~L~~ 74 (253)
T cd06221 1 IVEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLP-GVG---EAPISISSDPTRRGPLELTIRR--VGRVTEALHE 74 (253)
T ss_pred CceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcC-CCC---ccceEecCCCCCCCeEEEEEEe--CChhhHHHHc
Confidence 5688999999999999987653 2378999999999987 333 3899999999867899999998 6999999999
Q ss_pred CCCCCEEEEecccce-eeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhh
Q 042788 138 MHEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATN 216 (258)
Q Consensus 138 l~~Gd~v~v~gP~G~-f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~ 216 (258)
+++||++.++||+|. |..+....+++||||||+||||+++|++++.+...+.++++|+|++|+.+++++.++|++++++
T Consensus 75 l~~G~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i~Li~~~r~~~~~~~~~~L~~l~~~ 154 (253)
T cd06221 75 LKPGDTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELKEWAKR 154 (253)
T ss_pred CCCCCEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccccCCcEEEEEecCChHHcchHHHHHHHHhc
Confidence 999999999999999 5544335689999999999999999999999864345789999999999999999999999987
Q ss_pred CCCCeEEEEEEcCCCCCCCCccccccHHHHhhhC
Q 042788 217 SPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHC 250 (258)
Q Consensus 217 ~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~ 250 (258)
++ +++.++++++.+.|.+..|++++. +.+..
T Consensus 155 -~~-~~~~~~~s~~~~~~~~~~g~v~~~-l~~~~ 185 (253)
T cd06221 155 -SD-VEVILTVDRAEEGWTGNVGLVTDL-LPELT 185 (253)
T ss_pred -CC-eEEEEEeCCCCCCccCCccccchh-HHhcC
Confidence 66 999999998887787788999884 44443
No 40
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=100.00 E-value=6e-32 Score=226.20 Aligned_cols=167 Identities=22% Similarity=0.379 Sum_probs=146.4
Q ss_pred EEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccccc-
Q 042788 59 LTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFRE- 137 (258)
Q Consensus 59 v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~- 137 (258)
|++++.+++++++++|+.++. ..|+||||+.|+++ . + ..|+|||+|.+.+.+.++|+||..++|.+|.||.+
T Consensus 1 V~~~~~~~~~~~~i~l~~~~~---~~~~pGQ~v~l~~~-~-~--~~r~ySi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~ 73 (222)
T cd06194 1 VVSLQRLSPDVLRVRLEPDRP---LPYLPGQYVNLRRA-G-G--LARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEE 73 (222)
T ss_pred CceeeecCCCEEEEEEecCCC---CCcCCCCEEEEEcC-C-C--CceeeecCCCCCCCCEEEEEEEeccCCccchHHHhc
Confidence 567889999999999998764 78999999999987 2 2 45999999999776899999999888999999976
Q ss_pred CCCCCEEEEecccceeeecC-CCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhh
Q 042788 138 MHEGEYLPVKGPKGRLKYKV-GQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATN 216 (258)
Q Consensus 138 l~~Gd~v~v~gP~G~f~~~~-~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~ 216 (258)
+++||.|.+.||+|.+...+ ...++++|||||+||||++++++++.... ...+++++|++|+.+++++.+||++++++
T Consensus 74 ~~~G~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~ 152 (222)
T cd06194 74 ARPGHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG-HQGEIRLVHGARDPDDLYLHPALLWLARE 152 (222)
T ss_pred cCCCCEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC-CCccEEEEEecCChhhccCHHHHHHHHHH
Confidence 79999999999999976653 45578999999999999999999998763 45789999999999999999999999988
Q ss_pred CCCCeEEEEEEcCCCCCC
Q 042788 217 SPNRFKVYYVLSQPTEVW 234 (258)
Q Consensus 217 ~~~~~~v~~~~s~~~~~~ 234 (258)
+++ ++++.+++++++.+
T Consensus 153 ~~~-~~~~~~~~~~~~~~ 169 (222)
T cd06194 153 HPN-FRYIPCVSEGSQGD 169 (222)
T ss_pred CCC-eEEEEEEccCCCCC
Confidence 888 99999998865544
No 41
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=100.00 E-value=6.4e-32 Score=231.59 Aligned_cols=175 Identities=24% Similarity=0.422 Sum_probs=150.0
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF 135 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L 135 (258)
+++|++++.++++++.++|+.+ ..|+||||+.|+++ ..+ .|||||++.+ ++.++|+||. .|.+|++|
T Consensus 9 ~~~v~~i~~~t~~~~~~~l~~~-----~~~~pGQfi~l~~~-~~~---~~pySi~~~~--~~~~~~~Ik~--~G~~S~~L 75 (263)
T PRK08221 9 AYKILDITKHTDIEYTFRVEVD-----GPVKPGQFFEVSLP-KVG---EAPISVSDYG--DGYIDLTIRR--VGKVTDEI 75 (263)
T ss_pred cEEEEEEeccCCcEEEEEecCC-----CCCCCCceEEEEeC-CCC---cceeeccCCC--CCEEEEEEEe--CCchhhHH
Confidence 5999999999999999999864 36899999999988 333 3899998865 4789999998 59999999
Q ss_pred ccCCCCCEEEEecccce-eeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHH
Q 042788 136 REMHEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFA 214 (258)
Q Consensus 136 ~~l~~Gd~v~v~gP~G~-f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~ 214 (258)
+++++||+|.++||+|+ |.++....++++||||||||||++++++++..+..+.++++|+|++|+.+++++.+||++|+
T Consensus 76 ~~l~~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~~~~~v~L~~g~r~~~~l~~~~el~~~~ 155 (263)
T PRK08221 76 FNLKEGDKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILGFKNPDDILFKEDLKRWR 155 (263)
T ss_pred HhCCCCCEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHHHHHHHHh
Confidence 99999999999999998 77765556799999999999999999999987644456899999999999999999999998
Q ss_pred hhCCCCeEEEEEEcCCCCCCCCccccccHHHHh
Q 042788 215 TNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ 247 (258)
Q Consensus 215 ~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~ 247 (258)
++ +.++++++++++.|.+..|++++.+.+
T Consensus 156 ~~----~~~~~~~~~~~~~~~~~~G~v~~~l~~ 184 (263)
T PRK08221 156 EK----INLILTLDEGEEGYRGNVGLVTKYIPE 184 (263)
T ss_pred hc----CcEEEEecCCCCCCccCccccChhhHh
Confidence 75 345666777777888889999975443
No 42
>PRK05713 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-31 Score=235.27 Aligned_cols=166 Identities=21% Similarity=0.381 Sum_probs=146.6
Q ss_pred EEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccc
Q 042788 55 KEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHH 134 (258)
Q Consensus 55 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~ 134 (258)
.+++|++++.++++++.++|+.+. ...|+||||+.|+++ + ...|+|||+|.|.+.+.++|+||.+++|.+|.+
T Consensus 92 ~~~~V~~~~~~t~dv~~l~l~~~~---~~~~~~GQfv~l~~~---~-~~~R~ySias~p~~~~~l~~~I~~~~~G~~s~~ 164 (312)
T PRK05713 92 LPARVVALDWLGGDVLRLRLEPER---PLRYRAGQHLVLWTA---G-GVARPYSLASLPGEDPFLEFHIDCSRPGAFCDA 164 (312)
T ss_pred CCeEEEEEecCCCCEEEEEEccCC---cCCcCCCCEEEEecC---C-CcccccccCcCCCCCCeEEEEEEEcCCCccchh
Confidence 479999999999999999998754 378999999999875 2 257999999998777899999999889999999
Q ss_pred cccCCCCCEEEEecccce-eeecCC-CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHH
Q 042788 135 FREMHEGEYLPVKGPKGR-LKYKVG-QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDS 212 (258)
Q Consensus 135 L~~l~~Gd~v~v~gP~G~-f~~~~~-~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~ 212 (258)
|+++++||+|.+++|.|. |.++++ ..+++|||||||||||+++|++++.+.+ ...+++|+|++|+.+|++|.+||++
T Consensus 165 l~~l~~Gd~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~-~~~~v~l~~g~r~~~d~~~~~el~~ 243 (312)
T PRK05713 165 ARQLQVGDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQG-HQGPIRLLHLARDSAGHYLAEPLAA 243 (312)
T ss_pred hhcCCCCCEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcC-CCCcEEEEEEcCchHHhhhHHHHHH
Confidence 999999999999999985 655543 4578999999999999999999998874 4468999999999999999999999
Q ss_pred HHhhCCCCeEEEEEEcC
Q 042788 213 FATNSPNRFKVYYVLSQ 229 (258)
Q Consensus 213 l~~~~~~~~~v~~~~s~ 229 (258)
|++++|+ +++++++++
T Consensus 244 l~~~~~~-~~~~~~~~~ 259 (312)
T PRK05713 244 LAGRHPQ-LSVELVTAA 259 (312)
T ss_pred HHHHCCC-cEEEEEECc
Confidence 9999998 999887764
No 43
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.98 E-value=3.4e-31 Score=225.44 Aligned_cols=182 Identities=30% Similarity=0.524 Sum_probs=161.7
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF 135 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L 135 (258)
.++|.+++.+++++..++|+.+... +.++||||+.|+.| . ...||||+++.+.+.+.++|.|+.++.|.+|.++
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~--~~~~pGQfv~l~~~-~---~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T~~i 82 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVA--LTFKPGQFVMLRVP-G---GVRRPYSLASAPDDKGELELHIRVYEVGKVTKYI 82 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccc--cccCCCcEEEEEeC-C---CcEEEeeeccCCCcCCcEEEEEEEEeCChHHHHH
Confidence 5899999999999999999998764 78999999999988 2 5689999999998889899999998999999999
Q ss_pred ccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHh
Q 042788 136 REMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT 215 (258)
Q Consensus 136 ~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~ 215 (258)
..+++||.|.++||+|++...++..+++++||||||+||++++++++.+++ +..+++++|++|+++++++.+||++++.
T Consensus 83 ~~~k~gd~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~-~~~~V~~~~G~~~~~dl~~~~el~~~~~ 161 (252)
T COG0543 83 FGLKEGDKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG-DANKVTLLYGARTAKDLLLLDELEELAE 161 (252)
T ss_pred hhccCCCEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC-CCceEEEEEeccChhhcccHHHHHHhhc
Confidence 999999999999999995555445566999999999999999999999987 7789999999999999999999999986
Q ss_pred hCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCC
Q 042788 216 NSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT 252 (258)
Q Consensus 216 ~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~ 252 (258)
+ +++++++ ++|.|.+|+++.+.++++++.
T Consensus 162 ~-----~~~~~~~---~~~~G~~G~v~~~~~~~~~~~ 190 (252)
T COG0543 162 K-----EVHPVTD---DGWKGRKGFVTTDVLKELLDL 190 (252)
T ss_pred C-----cEEEEEC---CCCCccCcceeHHHHhhhccc
Confidence 4 3454554 889999999988888888765
No 44
>PRK05802 hypothetical protein; Provisional
Probab=99.97 E-value=3.9e-31 Score=232.00 Aligned_cols=178 Identities=16% Similarity=0.257 Sum_probs=151.2
Q ss_pred HHHhhhhhhccCCCCCCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeecccccc
Q 042788 33 ITIAVYLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITL 112 (258)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~ 112 (258)
-|.|.|..+.+..++...+....+++|++++.++++++.++|+.|+......++||||+.|+++ ..+....|||||++.
T Consensus 43 ~g~c~~~~~~~~~~~~~~~~~~~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~-~~~~~~~rP~SI~~~ 121 (320)
T PRK05802 43 KGVCIYQEFIWNGNKAKEGRKTYECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNK-NSSSFFDVPISIMEA 121 (320)
T ss_pred eeEEehHhhhhccchhcCccccEeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEc-CCCCEeEEeeEeccc
Confidence 3567777776677777777777899999999999999999999876422235799999999987 445566799999999
Q ss_pred CCCCCEEEEEEEEecCCccccccccCCCCCEEEEecccce--eeec---CCCCceEEEEEcCccHHHHHHHHHHHHhCCC
Q 042788 113 DSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGR--LKYK---VGQARAFGMIAGGTGITPMFQLTRAILENPK 187 (258)
Q Consensus 113 ~~~~~~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~--f~~~---~~~~~~vvliagGtGItp~~sil~~l~~~~~ 187 (258)
+.+++.++|+||. .|.+|++|+++++||++.++||+|+ |.+. ....+++++||||+||||++++++++.+++
T Consensus 122 ~~~~g~l~l~ik~--~G~~T~~L~~l~~Gd~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~- 198 (320)
T PRK05802 122 DTEENIIKVAIEI--RGVKTKKIAKLNKGDEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG- 198 (320)
T ss_pred CCCCCEEEEEEEe--cChhHHHHhcCCCCCEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC-
Confidence 8777999999999 7999999999999999999999965 5442 234468999999999999999999998875
Q ss_pred CCCeEEEEEEeCCCcccccHHHHHHHHhh
Q 042788 188 DKTNVHLIYANVTVGDILLKDELDSFATN 216 (258)
Q Consensus 188 ~~~~v~l~~~~r~~~d~~~~~eL~~l~~~ 216 (258)
.+++++|++|+.+++++.++|+++..+
T Consensus 199 --~~v~li~g~r~~~~~~~~~el~~~~~~ 225 (320)
T PRK05802 199 --NKIIVIIDKGPFKNNFIKEYLELYNIE 225 (320)
T ss_pred --CcEEEEEeCCCHHHHHHHHHHHHhhCc
Confidence 479999999999999999999998654
No 45
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.97 E-value=1.3e-30 Score=223.33 Aligned_cols=175 Identities=23% Similarity=0.404 Sum_probs=147.7
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF 135 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L 135 (258)
+++|+++..++++++.++++.+ ..|+||||+.|+++ ..+ .||||+++.+ ++.++|+||. .|.+|.+|
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~-----~~~~pGQ~v~l~~~-~~~---~~pySi~~~~--~~~l~~~Vk~--~G~~S~~L 73 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD-----GPVKPGQFFEVSLP-KYG---EAPISVSGIG--EGYIDLTIRR--VGKVTDEV 73 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC-----CCCCCCcEEEEEec-CCC---ccceecCCCC--CCeEEEEEEe--CchhhHHH
Confidence 6899999999999988888653 46999999999988 323 4899998843 4789999998 59999999
Q ss_pred ccCCCCCEEEEecccce-eeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHH
Q 042788 136 REMHEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFA 214 (258)
Q Consensus 136 ~~l~~Gd~v~v~gP~G~-f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~ 214 (258)
+++++||+|.++||+|. |.+++...++++||||||||||++++++++.++....++++|+|++|+.+++++.+||++++
T Consensus 74 ~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~r~~~~~~~~~eL~~l~ 153 (261)
T TIGR02911 74 FTLKEGDNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFKEDIAEWK 153 (261)
T ss_pred HcCCCCCEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHHHHHHHHH
Confidence 99999999999999999 77665556899999999999999999999987644446899999999999999999999998
Q ss_pred hhCCCCeEEEEEEcCCCCCCCCccccccHHHHh
Q 042788 215 TNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ 247 (258)
Q Consensus 215 ~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~ 247 (258)
++ ..++++++++++.|.+..|+++..+.+
T Consensus 154 ~~----~~~~~~~~~~~~~~~~~~g~v~~~l~~ 182 (261)
T TIGR02911 154 GN----INLTLTLDEAEEDYKGNIGLVTKYIPE 182 (261)
T ss_pred hc----CcEEEEEcCCCCCCcCCeeccCHhHHh
Confidence 74 334555666677788888999986544
No 46
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.97 E-value=2e-30 Score=225.10 Aligned_cols=171 Identities=23% Similarity=0.361 Sum_probs=146.0
Q ss_pred CCCcEEEEEEEEEEeC----CCEeEEEEECCCC----CccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEE
Q 042788 51 PENFKEFKLTKRTPIS----HNTAKFRFALPKS----TSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELV 122 (258)
Q Consensus 51 ~~~~~~~~v~~~~~~~----~~~~~l~l~~~~~----~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~ 122 (258)
...+.+++|++++.++ ++++.++|+.++. .....|.||||+.|..+ |....|+|||+|.|.+ +.++|+
T Consensus 42 ~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~---g~~~~R~YSias~p~~-g~l~l~ 117 (289)
T cd06201 42 LPRTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPP---GSDVPRFYSLASSSSD-GFLEIC 117 (289)
T ss_pred CCCccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecC---CCCCCceEecCCCCCC-CeEEEE
Confidence 3467799999999999 6999999998862 12467999999999743 5556799999999854 899999
Q ss_pred EEEecCCccccccccCCCCCEEEEe-cccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCC
Q 042788 123 VKMYPKGRMAHHFREMHEGEYLPVK-GPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTV 201 (258)
Q Consensus 123 Vk~~~~G~~S~~L~~l~~Gd~v~v~-gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~ 201 (258)
||.+++|.+|.||+++++||+|.+. +|.|.|..+ ...++++||||||||||+++|+++... .++++|+|++|+.
T Consensus 118 Vk~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~~~----~~~v~L~~g~r~~ 192 (289)
T cd06201 118 VRKHPGGLCSGYLHGLKPGDTIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRANAA----RRPMHLYWGGRDP 192 (289)
T ss_pred EEeCCCccchhhHhhCCCcCEEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhhhc----cCCEEEEEEecCc
Confidence 9999899999999999999999998 578888865 345789999999999999999998632 3579999999998
Q ss_pred c-ccccHHHHHHHHhhCCCCeEEEEEEcCCC
Q 042788 202 G-DILLKDELDSFATNSPNRFKVYYVLSQPT 231 (258)
Q Consensus 202 ~-d~~~~~eL~~l~~~~~~~~~v~~~~s~~~ 231 (258)
+ |++|.+||+++++++++ ++++++++++.
T Consensus 193 ~~d~~~~~eL~~l~~~~~~-~~~~~~~s~~~ 222 (289)
T cd06201 193 ASDFLYEDELDQYLADGRL-TQLHTAFSRTP 222 (289)
T ss_pred ccchHHHHHHHHHHHcCCC-ceEEEEECCCC
Confidence 5 89999999999998887 88888888753
No 47
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.97 E-value=2.5e-30 Score=223.71 Aligned_cols=177 Identities=20% Similarity=0.356 Sum_probs=147.0
Q ss_pred EEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc
Q 042788 57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR 136 (258)
Q Consensus 57 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~ 136 (258)
++|++++.++++++.++|+.|+. ...++||||+.|+++ ..+ ..|||||++.+.+++.++|+||. .|.+|++|+
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~--~~~~~pGQfv~l~~~-~~~--~~rpySias~~~~~~~i~l~vk~--~G~~T~~L~ 74 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRV--AKKAKPGQFVIVRID-EKG--ERIPLTIADYDREKGTITIVFQA--VGKSTRKLA 74 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchh--hccCCCCeEEEEEeC-CCC--CceeeEeeEEcCCCCEEEEEEEe--CCcHHHHHh
Confidence 57999999999999999998764 357999999999987 333 36899999988777899999998 699999999
Q ss_pred cCCCCCEE-EEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHh
Q 042788 137 EMHEGEYL-PVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT 215 (258)
Q Consensus 137 ~l~~Gd~v-~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~ 215 (258)
++++||+| .+.||+|++.... ..+++++||||+||||++++++++.+++ .+++++|++|+.+++++.+||++++.
T Consensus 75 ~l~~Gd~v~~i~GP~G~~~~~~-~~~~~llIaGGiGiaPl~~l~~~l~~~~---~~v~l~~g~r~~~d~~~~~el~~~~~ 150 (281)
T PRK06222 75 ELKEGDSILDVVGPLGKPSEIE-KFGTVVCVGGGVGIAPVYPIAKALKEAG---NKVITIIGARNKDLLILEDEMKAVSD 150 (281)
T ss_pred cCCCCCEEeeEEcCCCCCcccC-CCCeEEEEeCcCcHHHHHHHHHHHHHCC---CeEEEEEecCCHHHhhcHHHHHhhCC
Confidence 99999999 7999999954433 3579999999999999999999988764 57999999999999999999998864
Q ss_pred hCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCCCC
Q 042788 216 NSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTPA 254 (258)
Q Consensus 216 ~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~~~ 254 (258)
+ +. +.+ +++|.+..|++++ .+++.+++..
T Consensus 151 ~----~~---v~~--~d~~~g~~G~v~~-~l~~~~~~~~ 179 (281)
T PRK06222 151 E----LY---VTT--DDGSYGRKGFVTD-VLKELLESGK 179 (281)
T ss_pred e----EE---EEc--CCCCcCcccchHH-HHHHHhhcCC
Confidence 3 21 222 3567788999988 5666665543
No 48
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.97 E-value=3.8e-30 Score=218.68 Aligned_cols=176 Identities=20% Similarity=0.380 Sum_probs=145.0
Q ss_pred EEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccccC
Q 042788 59 LTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREM 138 (258)
Q Consensus 59 v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~l 138 (258)
|++++.+++++++++|+.++. ...|+||||+.|+++..++....|+||++|.+.+++.++|+||. .|.+|++|.++
T Consensus 1 V~~~~~~t~~v~~l~l~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~--~G~~s~~l~~l 76 (246)
T cd06218 1 VLSNREIADDIYRLVLEAPEI--AAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKV--VGKGTRLLSEL 76 (246)
T ss_pred CcceeEecCCeEEEEEeCcch--hccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEE--ECcchHHHhcC
Confidence 567899999999999998873 47899999999999832344578999999998766899999998 58899999999
Q ss_pred CCCCEEEEecccce-eeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhC
Q 042788 139 HEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNS 217 (258)
Q Consensus 139 ~~Gd~v~v~gP~G~-f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~ 217 (258)
++||+|.+.||+|. |..+. ..++++||||||||||++++++++.... .+++|+|++|+.++++|.+||+++..
T Consensus 77 ~~Gd~v~i~gP~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~~~---~~v~l~~~~r~~~d~~~~~eL~~l~~-- 150 (246)
T cd06218 77 KAGDELDVLGPLGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAERG---IKVTVLLGFRSADDLFLVEEFEALGA-- 150 (246)
T ss_pred CCCCEEEEEecCCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHhcC---CceEEEEEccchhhhhhHHHHHhhCC--
Confidence 99999999999997 66543 4689999999999999999999998743 68999999999999999999998853
Q ss_pred CCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCC
Q 042788 218 PNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT 252 (258)
Q Consensus 218 ~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~ 252 (258)
++.+ .+ .++|.+..|++++ .+++..++
T Consensus 151 ----~~~~-~~--~~~~~~~~g~v~~-~l~~~~~~ 177 (246)
T cd06218 151 ----EVYV-AT--DDGSAGTKGFVTD-LLKELLAE 177 (246)
T ss_pred ----cEEE-Ec--CCCCCCcceehHH-HHHHHhhc
Confidence 2222 22 2346667889988 46555544
No 49
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.6e-30 Score=221.80 Aligned_cols=181 Identities=22% Similarity=0.288 Sum_probs=156.1
Q ss_pred CcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccc
Q 042788 53 NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA 132 (258)
Q Consensus 53 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S 132 (258)
..+.++|+..++.+.++.+++.....+ ..++||||..++++..++...+|||||+++... .+++|.||. -|+.|
T Consensus 214 ~~y~~~vt~~~r~~~~t~eit~~l~~~---~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~-sel~FsIK~--LGD~T 287 (438)
T COG4097 214 FPYLGKVTAPQRGNVDTLEITIGLQGP---WLYQAGQFAFLKIEIEEFRMRPHPFTIACSHEG-SELRFSIKA--LGDFT 287 (438)
T ss_pred cccceEEechhhcCcchheeecccCCc---ccccCCceEEEEeccccccCCCCCeeeeeCCCC-ceEEEEehh--hhhhh
Confidence 345789999999999998888887766 449999999999985455567899999998866 489999998 89999
Q ss_pred cccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHH
Q 042788 133 HHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD 211 (258)
Q Consensus 133 ~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~ 211 (258)
+-|+ ++++|++++++||||.|.++... ++-|+||||+||||++|+++.+..+ .++.+|+|+|++|+.++..|.+||+
T Consensus 288 k~l~dnLk~G~k~~vdGPYG~F~~~~g~-~~QVWIAGGIGITPFis~l~~l~~~-~s~~~V~L~Y~~~n~e~~~y~~eLr 365 (438)
T COG4097 288 KTLKDNLKVGTKLEVDGPYGKFDFERGL-NTQVWIAGGIGITPFISMLFTLAER-KSDPPVHLFYCSRNWEEALYAEELR 365 (438)
T ss_pred HHHHHhccCCceEEEecCcceeecccCC-cccEEEecCcCcchHHHHHHhhccc-ccCCceEEEEEecCCchhHHHHHHH
Confidence 9996 79999999999999999987654 4479999999999999999999985 3567999999999999999999999
Q ss_pred HHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhh
Q 042788 212 SFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMH 249 (258)
Q Consensus 212 ~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~ 249 (258)
++++++|+ +.+|.. |++..|+++.+.+++.
T Consensus 366 ~~~qkl~~-~~lHii-------DSs~~g~l~~e~ler~ 395 (438)
T COG4097 366 ALAQKLPN-VVLHII-------DSSKDGYLDQEDLERY 395 (438)
T ss_pred HHHhcCCC-eEEEEe-------cCCCCCccCHHHhhcc
Confidence 99999999 888862 2234678888888876
No 50
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.97 E-value=7.7e-30 Score=216.40 Aligned_cols=169 Identities=19% Similarity=0.262 Sum_probs=141.1
Q ss_pred EEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccccC
Q 042788 59 LTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREM 138 (258)
Q Consensus 59 v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~l 138 (258)
|++++.+++++++++|+.|+. ...|+||||+.|+++ ..+....|||||++.+.+.+.++|+||. .|.+|+||.++
T Consensus 1 i~~~~~~t~~~~~l~l~~~~~--~~~~~pGQ~v~l~~~-~~~~~~~rpySi~s~~~~~~~l~l~i~~--~G~~t~~l~~~ 75 (243)
T cd06192 1 IVKKEQLEPNLVLLTIKAPLA--ARLFRPGQFVFLRNF-ESPGLERIPLSLAGVDPEEGTISLLVEI--RGPKTKLIAEL 75 (243)
T ss_pred CceEEEecCCEEEEEEEccch--hhcCCCCCeEEEecC-CCCCceeeeeEeeecCCCCCEEEEEEEE--cCchHHHHHhC
Confidence 467899999999999998764 368999999999987 3445578999999998777899999998 68999999999
Q ss_pred CCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCC
Q 042788 139 HEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSP 218 (258)
Q Consensus 139 ~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~ 218 (258)
++||++.++||+|++...+...++++||||||||||++++++++.+++ .+++++|++|+.+|+++.+||+++.
T Consensus 76 ~~G~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~~~---- 148 (243)
T cd06192 76 KPGEKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG---NKVTVLAGAKKAKEEFLDEYFELPA---- 148 (243)
T ss_pred CCCCEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC---CeEEEEEecCcHHHHHHHHHHHhhc----
Confidence 999999999999996554444589999999999999999999998763 6899999999999999999998872
Q ss_pred CCeEEEEEEcCCCCCCCCccccccHH
Q 042788 219 NRFKVYYVLSQPTEVWNGGIGHVSKE 244 (258)
Q Consensus 219 ~~~~v~~~~s~~~~~~~~~~G~i~~~ 244 (258)
..+. +++ +++|.+..|+++..
T Consensus 149 --~~~~-~~~--~~~~~~~~g~v~~~ 169 (243)
T cd06192 149 --DVEI-WTT--DDGELGLEGKVTDS 169 (243)
T ss_pred --CeEE-EEe--cCCCCccceeechh
Confidence 1222 233 24566677888764
No 51
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.97 E-value=8.8e-30 Score=218.68 Aligned_cols=169 Identities=17% Similarity=0.193 Sum_probs=142.6
Q ss_pred CCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCC-CCEEEEEEEEecC---------Cccccccc
Q 042788 67 HNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSD-IGYFELVVKMYPK---------GRMAHHFR 136 (258)
Q Consensus 67 ~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~-~~~l~~~Vk~~~~---------G~~S~~L~ 136 (258)
+++++++|+.++.. ...|.||||+.|.++ +....|+|||+|.|.+ .+.++|+||..+. |.+|.+|+
T Consensus 15 ~~v~~l~l~~~~~~-~~~~~pGQ~v~l~~~---~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~ 90 (267)
T cd06182 15 RSTRHLEFDLSGNS-VLKYQPGDHLGVIPP---NPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLA 90 (267)
T ss_pred CceEEEEEecCCCC-cCccCCCCEEEEecC---CCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHh
Confidence 46999999988521 478999999999876 3456799999999854 5899999999755 99999999
Q ss_pred cCCCCCEEEEecccc-eeeecCCCCceEEEEEcCccHHHHHHHHHHHHhC---CCCCCeEEEEEEeCCC-cccccHHHHH
Q 042788 137 EMHEGEYLPVKGPKG-RLKYKVGQARAFGMIAGGTGITPMFQLTRAILEN---PKDKTNVHLIYANVTV-GDILLKDELD 211 (258)
Q Consensus 137 ~l~~Gd~v~v~gP~G-~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~---~~~~~~v~l~~~~r~~-~d~~~~~eL~ 211 (258)
++++||.|.+.||+| .|.++.+..+++|||||||||||+++++++++.. .....+++++|++|+. ++++|.++|+
T Consensus 91 ~lk~Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~ 170 (267)
T cd06182 91 GLQLGAKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQ 170 (267)
T ss_pred hCCCCCEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHH
Confidence 999999999999999 7988766568999999999999999999999872 2234689999999999 9999999999
Q ss_pred HHHhhCCCCeEEEEEEcCCCCCCCCccccccH
Q 042788 212 SFATNSPNRFKVYYVLSQPTEVWNGGIGHVSK 243 (258)
Q Consensus 212 ~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~ 243 (258)
++++++++ +++++++|+++.. ..|++++
T Consensus 171 ~~~~~~~~-~~~~~~~S~~~~~---~~~~v~~ 198 (267)
T cd06182 171 EALKDGAL-TRLDVAFSREQAE---PKVYVQD 198 (267)
T ss_pred HHHhCCCc-ceEEEEEccCCCC---CceehHH
Confidence 99987777 9999999976543 2466654
No 52
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.97 E-value=1.7e-29 Score=228.72 Aligned_cols=186 Identities=16% Similarity=0.202 Sum_probs=149.0
Q ss_pred CCCcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEec--CCCC-eeeeeccccccCCCC----CE
Q 042788 51 PENFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGKD--SEGN-EVIRPYTPITLDSDI----GY 118 (258)
Q Consensus 51 ~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~--~~g~-~~~R~ySi~s~~~~~----~~ 118 (258)
+.....++|++++.+++ +++.++|+.++. .+.|.||||+.|.+|. .+|. ...|+|||+|.++++ +.
T Consensus 139 ~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~--~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~ 216 (411)
T TIGR03224 139 VKAPITATVVGNYRLTDEDASSDIHHIVLDFGSH--PFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNN 216 (411)
T ss_pred CCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCC--cCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCE
Confidence 34456799999999954 999999998764 4789999999998762 1233 357999999986321 47
Q ss_pred EEEEEEEec--------CCccccccccCCCCCEEEEecccce-eeecCCCCceEEEEEcCccHHHHHHHHHHHHhC--CC
Q 042788 119 FELVVKMYP--------KGRMAHHFREMHEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPMFQLTRAILEN--PK 187 (258)
Q Consensus 119 l~~~Vk~~~--------~G~~S~~L~~l~~Gd~v~v~gP~G~-f~~~~~~~~~vvliagGtGItp~~sil~~l~~~--~~ 187 (258)
++|+||+++ +|.+|+||+++++||+|.++||+|+ |.++....+++||||||||||||++|++++... ..
T Consensus 217 l~l~Vk~v~~~~~g~~~~G~~S~~L~~lk~Gd~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~ 296 (411)
T TIGR03224 217 LALTVKRVTTDHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG 296 (411)
T ss_pred EEEEEEEEEecCCCCcCcccchhHHhcCCCcCEEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC
Confidence 999999975 5899999999999999999999998 555433357899999999999999999998753 12
Q ss_pred CCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788 188 DKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE 244 (258)
Q Consensus 188 ~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~ 244 (258)
...+++|+|++|+.++++|.+||+++.+.+ +++++++++++++ ..|++++.
T Consensus 297 ~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~---~~~~~~~sr~~~~---~~g~V~d~ 347 (411)
T TIGR03224 297 EGGKLMLFFGARTKEELPYFGPLQKLPKDF---IDINFAFSRTPEQ---PKRYVQDA 347 (411)
T ss_pred CCCCEEEEEecCccccchHHHHHHHHHhcC---ceEEEEeccCCcc---CcccHhhH
Confidence 346899999999999999999999998766 4456677875443 36788774
No 53
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.97 E-value=1.5e-29 Score=210.85 Aligned_cols=156 Identities=25% Similarity=0.355 Sum_probs=135.7
Q ss_pred eCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc-cCCCCCE
Q 042788 65 ISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR-EMHEGEY 143 (258)
Q Consensus 65 ~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~-~l~~Gd~ 143 (258)
++.+++.++|+.++.. ..|+||||+.|+++ ..+....|+|||++.|.+++.++|+||. .|.+|++|. ++++||+
T Consensus 5 ~~~~~~~i~l~~~~~~--~~~~pGQ~v~l~~~-~~~~~~~r~ySi~s~~~~~~~l~l~vk~--~G~~t~~l~~~l~~G~~ 79 (216)
T cd06198 5 EVRPTTTLTLEPRGPA--LGHRAGQFAFLRFD-ASGWEEPHPFTISSAPDPDGRLRFTIKA--LGDYTRRLAERLKPGTR 79 (216)
T ss_pred EecceEEEEEeeCCCC--CCcCCCCEEEEEeC-CCCCCCCCCcEEecCCCCCCeEEEEEEe--CChHHHHHHHhCCCCCE
Confidence 4457889999876642 78999999999988 4455678999999998877899999998 688999997 9999999
Q ss_pred EEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEE
Q 042788 144 LPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKV 223 (258)
Q Consensus 144 v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v 223 (258)
|.++||+|.|.++.. .++++|||||+||||++++++++..+. ...+++++|++|+.++++|.++|+++.+++ + +++
T Consensus 80 v~i~gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~-~-~~~ 155 (216)
T cd06198 80 VTVEGPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARG-DARPVTLFYCVRDPEDAVFLDELRALAAAA-G-VVL 155 (216)
T ss_pred EEEECCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcC-CCceEEEEEEECCHHHhhhHHHHHHHHHhc-C-eEE
Confidence 999999999887655 689999999999999999999998764 356899999999999999999999998887 5 888
Q ss_pred EEEEcC
Q 042788 224 YYVLSQ 229 (258)
Q Consensus 224 ~~~~s~ 229 (258)
+++.++
T Consensus 156 ~~~~~~ 161 (216)
T cd06198 156 HVIDSP 161 (216)
T ss_pred EEEeCC
Confidence 876554
No 54
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.97 E-value=1.7e-29 Score=214.86 Aligned_cols=173 Identities=21% Similarity=0.378 Sum_probs=143.3
Q ss_pred EEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc
Q 042788 57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR 136 (258)
Q Consensus 57 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~ 136 (258)
++|+++++++++++.++|+.++. ...|+||||+.|+++ ..+ ..|||||++.+.+.+.++|+||. .|..|.+|.
T Consensus 1 ~~v~~~~~~t~d~~~~~l~~~~~--~~~~~pGQf~~l~~~-~~~--~~~pySi~s~~~~~~~~~~~vk~--~G~~t~~l~ 73 (248)
T cd06219 1 YKILEKEELAPNVKLFEIEAPLI--AKKAKPGQFVIVRAD-EKG--ERIPLTIADWDPEKGTITIVVQV--VGKSTRELA 73 (248)
T ss_pred CEEEEEEEeCCCeEEEEEEChhh--hccCCCCcEEEEEcC-CCC--CccceEeEEEcCCCCEEEEEEEe--CCchHHHHH
Confidence 47899999999999999998764 357999999999976 333 35899999998777899999998 688999999
Q ss_pred cCCCCCEE-EEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHh
Q 042788 137 EMHEGEYL-PVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT 215 (258)
Q Consensus 137 ~l~~Gd~v-~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~ 215 (258)
++++||++ .++||+|.+.... ..++++|||||+||||++++++++.+.+ .+++++|++|+.++++|.+||+++++
T Consensus 74 ~l~~G~~v~~i~gP~G~~~~~~-~~~~~lliagG~GiaP~~~~l~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~ 149 (248)
T cd06219 74 TLEEGDKIHDVVGPLGKPSEIE-NYGTVVFVGGGVGIAPIYPIAKALKEAG---NRVITIIGARTKDLVILEDEFRAVSD 149 (248)
T ss_pred hcCCCCEeeeeecCCCCCeecC-CCCeEEEEeCcccHHHHHHHHHHHHHcC---CeEEEEEEcCCHHHhhhHHHHHhhcC
Confidence 99999999 6999999965543 3579999999999999999999988764 58999999999999999999999964
Q ss_pred hCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhC
Q 042788 216 NSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHC 250 (258)
Q Consensus 216 ~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~ 250 (258)
+ . .+ .+ ++.|.+..|++++. +++.+
T Consensus 150 ~----~--~~-~~--~~~~~~~~g~v~~~-l~~~~ 174 (248)
T cd06219 150 E----L--II-TT--DDGSYGEKGFVTDP-LKELI 174 (248)
T ss_pred e----E--EE-Ee--CCCCCCccccchHH-HHHHH
Confidence 3 2 22 22 23466678888874 55555
No 55
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.97 E-value=4.9e-29 Score=212.36 Aligned_cols=171 Identities=16% Similarity=0.334 Sum_probs=144.0
Q ss_pred CcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccc
Q 042788 53 NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA 132 (258)
Q Consensus 53 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S 132 (258)
+++.++|++++.++++++.++|+.+. ...|+||||+.|+++ ..+....|+||+++.+ ++.++|.||. .|.+|
T Consensus 3 ~~~~~~V~~~~~~t~d~~~l~l~~~~---~~~~~pGQ~v~l~~~-~~~~~~~r~ySi~s~~--~~~l~l~Vk~--~G~~t 74 (250)
T PRK00054 3 KPENMKIVENKEIAPNIYTLVLDGEK---VFDMKPGQFVMVWVP-GVEPLLERPISISDID--KNEITILYRK--VGEGT 74 (250)
T ss_pred CceEEEEEEEEEecCCeEEEEEeCcc---ccCCCCCcEEEEEeC-CCCCcCceeeEEeeeC--CCEEEEEEEE--cChHH
Confidence 56789999999999999999999653 478999999999988 4455568999999988 4799999998 69999
Q ss_pred cccccCCCCCEEEEecccce-eeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHH
Q 042788 133 HHFREMHEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD 211 (258)
Q Consensus 133 ~~L~~l~~Gd~v~v~gP~G~-f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~ 211 (258)
++|+++++||+|.+.||+|. |.++. ..+++++|||||||||++++++++...+ .+++++|++|+.+|++|.+||+
T Consensus 75 ~~l~~l~~G~~v~i~gP~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~---~~v~l~~~~r~~~d~~~~~el~ 150 (250)
T PRK00054 75 KKLSKLKEGDELDIRGPLGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKKKG---VEVTTVLGARTKDEVIFEEEFA 150 (250)
T ss_pred HHHhcCCCCCEEEEEcccCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHHcC---CcEEEEEEcCCHHHhhhHHHHH
Confidence 99999999999999999998 76653 5589999999999999999999998754 5799999999999999999999
Q ss_pred HHHhhCCCCeEEEEEEcCCCCCCCCccccccHHH
Q 042788 212 SFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEM 245 (258)
Q Consensus 212 ~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~ 245 (258)
++++ +.+ .+ +++|.+..|++++.+
T Consensus 151 ~~~~-----~~~---~~--~~~~~~~~g~v~~~l 174 (250)
T PRK00054 151 KVGD-----VYV---TT--DDGSYGFKGFVTDVL 174 (250)
T ss_pred hcCC-----EEE---Ee--cCCCCCcccchhHhH
Confidence 8431 221 12 345666778888753
No 56
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.96 E-value=4.3e-29 Score=208.75 Aligned_cols=153 Identities=25% Similarity=0.371 Sum_probs=128.4
Q ss_pred EEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCC---------------CCeeeeeccccccCCCC---CEEEEE
Q 042788 61 KRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSE---------------GNEVIRPYTPITLDSDI---GYFELV 122 (258)
Q Consensus 61 ~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~---------------g~~~~R~ySi~s~~~~~---~~l~~~ 122 (258)
+++.+++++++++|+.++......|+||||+.|+++... ++...|+|||+|.|.++ +.++|.
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~ 81 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEIT 81 (220)
T ss_pred cceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEE
Confidence 467899999999999987644589999999999987311 22457999999998653 789999
Q ss_pred EEEecCCccccccccCC--C---CCEEEEecccceeeecC---CCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEE
Q 042788 123 VKMYPKGRMAHHFREMH--E---GEYLPVKGPKGRLKYKV---GQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHL 194 (258)
Q Consensus 123 Vk~~~~G~~S~~L~~l~--~---Gd~v~v~gP~G~f~~~~---~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l 194 (258)
||. .|.+|++|.+.. . |+++.+.||+|.|.++. +..++++||||||||||++++++++........+++|
T Consensus 82 vk~--~G~~T~~L~~~~~~~~~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~~~~~~v~l 159 (220)
T cd06197 82 VRK--KGPVTGFLFQVARRLREQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRNTTWDITL 159 (220)
T ss_pred EEe--CCCCCHHHHHhhhcccCCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhcccCCCcEEE
Confidence 999 599999997543 3 99999999999998764 3457899999999999999999999876434578999
Q ss_pred EEEeCCCcccccHHHHHHHHh
Q 042788 195 IYANVTVGDILLKDELDSFAT 215 (258)
Q Consensus 195 ~~~~r~~~d~~~~~eL~~l~~ 215 (258)
+|++|+.+++++.+||+++.+
T Consensus 160 ~~~~r~~~~~~~~~el~~~~~ 180 (220)
T cd06197 160 LWSLREDDLPLVMDTLVRFPG 180 (220)
T ss_pred EEEecchhhHHHHHHHHhccC
Confidence 999999999999999988754
No 57
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.96 E-value=3.3e-28 Score=206.64 Aligned_cols=163 Identities=16% Similarity=0.218 Sum_probs=134.7
Q ss_pred CEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecC-----Cccccccc-cCCCC
Q 042788 68 NTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPK-----GRMAHHFR-EMHEG 141 (258)
Q Consensus 68 ~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~-----G~~S~~L~-~l~~G 141 (258)
++++++|+.++. ...|+||||+.|.++ +....|+|||+|.|.+ +.++|+||..++ |.+|.+|+ .+++|
T Consensus 17 ~v~~l~l~~~~~--~~~f~pGQ~v~l~~~---~~~~~R~YSIas~p~~-~~l~l~Vk~~~~~~~~~G~~S~~L~~~~~~G 90 (245)
T cd06200 17 PLWRLRLTPPDA--GAQWQAGDIAEIGPR---HPLPHREYSIASLPAD-GALELLVRQVRHADGGLGLGSGWLTRHAPIG 90 (245)
T ss_pred ceEEEEEecCCC--CCCccCCcEEEecCC---CCCCCcceEeccCCCC-CEEEEEEEEeccCCCCCeeechhhhhCCCCC
Confidence 599999998753 478999999999865 2346799999999864 789999999866 77999996 56999
Q ss_pred CEEEEecccc-eeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCc-ccccHHHHHHHHhhCCC
Q 042788 142 EYLPVKGPKG-RLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVG-DILLKDELDSFATNSPN 219 (258)
Q Consensus 142 d~v~v~gP~G-~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~-d~~~~~eL~~l~~~~~~ 219 (258)
|+|.+.||.| .|.++. ..+++|||||||||||+++|++++..++ ..+++++|++|+.+ +++|.+||+++++++++
T Consensus 91 d~v~i~gp~gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~--~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~ 167 (245)
T cd06200 91 ASVALRLRENPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAG--RHRNWLLFGERQAAHDFFCREELEAWQAAGHL 167 (245)
T ss_pred CEEEEEecCCCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHhcc--CCCeEEEEecCCccccHhHHHHHHHHHHCCCc
Confidence 9999999866 577654 4578999999999999999999998763 25789999999984 99999999999998888
Q ss_pred CeEEEEEEcCCCCCCCCccccccHH
Q 042788 220 RFKVYYVLSQPTEVWNGGIGHVSKE 244 (258)
Q Consensus 220 ~~~v~~~~s~~~~~~~~~~G~i~~~ 244 (258)
+++++++++++. ..|++++.
T Consensus 168 -~~~~~~~s~~~~----~~~~v~~~ 187 (245)
T cd06200 168 -ARLDLAFSRDQA----QKRYVQDR 187 (245)
T ss_pred -ceEEEEEccCCC----CCcchHHH
Confidence 899888887543 24566553
No 58
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.96 E-value=3.4e-29 Score=208.02 Aligned_cols=203 Identities=19% Similarity=0.388 Sum_probs=177.4
Q ss_pred CCCCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEec----------------------------
Q 042788 46 RGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKD---------------------------- 97 (258)
Q Consensus 46 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~---------------------------- 97 (258)
+.++...+| +++|++..+.+.-+.++.++.|+.. ...|+||-|+.+.+|.
T Consensus 127 Ee~fgvkkW-ectViSNdN~ATFIKEL~laip~g~-~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs 204 (410)
T COG2871 127 EEVFGVKKW-ECTVISNDNKATFIKELKLAIPEGE-EVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVS 204 (410)
T ss_pred HHhcCccce-eEEEEeCCchhhhhhhheeeCCCCC-ccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeec
Confidence 445666677 7999999999999999999999886 5789999999999871
Q ss_pred CCCCeeeeeccccccCCCCCEEEEEEEEe---------cCCccccccccCCCCCEEEEecccceeeecCCCCceEEEEEc
Q 042788 98 SEGNEVIRPYTPITLDSDIGYFELVVKMY---------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAG 168 (258)
Q Consensus 98 ~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliag 168 (258)
...+...|.||.+|.|++.+.+.|-||.. |.|.+|.|+.+|++||+|.++||+|.|..+++ ..++|||+|
T Consensus 205 ~v~e~~~rAYSmAsYPeE~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDKvtisGPfGEfFaKdt-daemvFigG 283 (410)
T COG2871 205 KVDEPIIRAYSMASYPEEKGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDKVTISGPFGEFFAKDT-DAEMVFIGG 283 (410)
T ss_pred cccHHHHHHhhhhcChhhcCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCCeEEEeccchhhhhccC-CCceEEEec
Confidence 01123469999999999999999999975 56889999999999999999999999776654 488999999
Q ss_pred CccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCC--CCCCCCccccccHHHH
Q 042788 169 GTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQP--TEVWNGGIGHVSKEMI 246 (258)
Q Consensus 169 GtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~--~~~~~~~~G~i~~~~l 246 (258)
|.|.+|++|.+-.++.+-...+++.+.|++|+..+.+|.++++++++++|| |+.|+++|++ +++|.+.+|++...+.
T Consensus 284 GAGmapmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~pN-F~wH~aLSdplpEDnW~g~TgFihnv~~ 362 (410)
T COG2871 284 GAGMAPMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENPN-FHWHLALSDPLPEDNWDGYTGFIHNVLY 362 (410)
T ss_pred CcCcCchHHHHHHHHHhhcccceeeeeeccchHHHhHHHHHHHHHHhhCCC-cEEEEEecCCCCcCCcccchhHHHHHHH
Confidence 999999999998888776677899999999999999999999999999999 9999999976 5889999999999888
Q ss_pred hhhCCC
Q 042788 247 QMHCPT 252 (258)
Q Consensus 247 ~~~~~~ 252 (258)
+..+.+
T Consensus 363 en~Lk~ 368 (410)
T COG2871 363 ENYLKD 368 (410)
T ss_pred hhhhhc
Confidence 777654
No 59
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.96 E-value=2e-28 Score=203.24 Aligned_cols=153 Identities=22% Similarity=0.358 Sum_probs=131.6
Q ss_pred EEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCc-cccccc-cC
Q 042788 61 KRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGR-MAHHFR-EM 138 (258)
Q Consensus 61 ~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~-~S~~L~-~l 138 (258)
+++.+++++++++|+.+.......|+||||+.|+++ . ...|+|||++.+.+.+.++|+||.+++|. +|.||. .+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~-~---~~~r~ySi~s~~~~~~~l~~~v~~~~~g~~~s~~l~~~~ 77 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLP-N---GLVRQYSLCGDPADRDRYRIAVLREPASRGGSRYMHELL 77 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcC-C---CCceeeeccCCCCCCCEEEEEEEeccCCCchHHHHHhcC
Confidence 578999999999999987643348999999999987 2 35799999999877789999999987665 799985 68
Q ss_pred CCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCC
Q 042788 139 HEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSP 218 (258)
Q Consensus 139 ~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~ 218 (258)
++||+|.++||+|.|.+.+. .++++||||||||||++++++++.+.. .+++++|++|+.+++++.++|++++ .+
T Consensus 78 ~~Gd~v~i~gP~g~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~~~--~~ 151 (211)
T cd06185 78 RVGDELEVSAPRNLFPLDEA-ARRHLLIAGGIGITPILSMARALAARG---ADFELHYAGRSREDAAFLDELAALP--GD 151 (211)
T ss_pred CCCCEEEEcCCccCCcCCCC-CCcEEEEeccchHhHHHHHHHHHHhCC---CCEEEEEEeCCCcchhHHHHHhhhc--CC
Confidence 99999999999999887653 578999999999999999999998753 5799999999999999999999987 33
Q ss_pred CCeEEE
Q 042788 219 NRFKVY 224 (258)
Q Consensus 219 ~~~~v~ 224 (258)
+ +++.
T Consensus 152 ~-~~~~ 156 (211)
T cd06185 152 R-VHLH 156 (211)
T ss_pred c-EEEE
Confidence 3 6655
No 60
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.96 E-value=1.4e-27 Score=201.34 Aligned_cols=162 Identities=20% Similarity=0.315 Sum_probs=134.6
Q ss_pred EEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc
Q 042788 57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR 136 (258)
Q Consensus 57 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~ 136 (258)
.+|++++++++++++++|+.+ ..|+||||+.|+++ ..+ .|+||+++.| +.++|+||. .|.+|+||+
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~-----~~~~pGQ~v~l~~~-~~~---~~~~Si~s~~---~~l~~~v~~--~G~~s~~L~ 66 (233)
T cd06220 1 VTIKEVIDETPTVKTFVFDWD-----FDFKPGQFVMVWVP-GVD---EIPMSLSYID---GPNSITVKK--VGEATSALH 66 (233)
T ss_pred CEEEEEEEEcCCEEEEEEecC-----CCCCCCceEEEEeC-CCC---cceeEEecCC---CeEEEEEEe--cChHHHHHH
Confidence 378999999999999999864 47999999999987 222 4899999987 689999998 599999999
Q ss_pred cCCCCCEEEEecccce-eeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHh
Q 042788 137 EMHEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT 215 (258)
Q Consensus 137 ~l~~Gd~v~v~gP~G~-f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~ 215 (258)
++++||++.+.||+|. |.++ .++++||||||||||++++++++..+ ++++++|++|+.+|+++.+||++.
T Consensus 67 ~l~~Gd~v~i~gP~G~~f~~~---~~~~vliAgGtGitP~~sil~~~~~~----~~i~l~~~~r~~~d~~~~~eL~~~-- 137 (233)
T cd06220 67 DLKEGDKLGIRGPYGNGFELV---GGKVLLIGGGIGIAPLAPLAERLKKA----ADVTVLLGARTKEELLFLDRLRKS-- 137 (233)
T ss_pred hcCCCCEEEEECcCCCCccCC---CCeEEEEecCcChHHHHHHHHHHHhc----CCEEEEEecCChHHChhHHHHhhC--
Confidence 8999999999999998 7654 57999999999999999999999875 589999999999999999999972
Q ss_pred hCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhC
Q 042788 216 NSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHC 250 (258)
Q Consensus 216 ~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~ 250 (258)
.. +.+ +.+ ++|.+..|++++. +++..
T Consensus 138 --~~-~~~--~~~---~~~~~~~g~~~~~-l~~~~ 163 (233)
T cd06220 138 --DE-LIV--TTD---DGSYGFKGFVTDL-LKELD 163 (233)
T ss_pred --Cc-EEE--EEe---CCCCcccceehHH-Hhhhc
Confidence 12 332 222 3466678999874 54443
No 61
>PLN02292 ferric-chelate reductase
Probab=99.95 E-value=1.4e-26 Score=219.05 Aligned_cols=190 Identities=16% Similarity=0.275 Sum_probs=151.4
Q ss_pred EEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCC-CCCEEEEEEEEecCCcccc
Q 042788 55 KEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDS-DIGYFELVVKMYPKGRMAH 133 (258)
Q Consensus 55 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~-~~~~l~~~Vk~~~~G~~S~ 133 (258)
..+++++++.+++++.+++++.++. ..++||||+++++| ..+..++|||||+|.|. +++.+++.||. .|.+|+
T Consensus 325 ~~~~Iv~~~~l~~dvv~L~~~~~~~---~~~~PGQ~vfL~~P-~~s~~q~HPFTIaSsp~~~~~~l~l~IK~--~G~~T~ 398 (702)
T PLN02292 325 NNVKLVSARVLPCDTVELNFSKNPM---LMYSPTSIMFVNIP-SISKLQWHPFTITSSSKLEPEKLSVMIKS--QGKWST 398 (702)
T ss_pred cceEEEEEEEcCCCEEEEEEEcCCC---CCcCCCCeEEEEEc-cCCccceeeeEeeccCCCCCCEEEEEEEc--CCchhH
Confidence 4688999999999999999987753 68999999999998 55567899999999874 56789999997 799998
Q ss_pred ccc-cCCCCCE-----EEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCC----CCeEEEEEEeCCCcc
Q 042788 134 HFR-EMHEGEY-----LPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKD----KTNVHLIYANVTVGD 203 (258)
Q Consensus 134 ~L~-~l~~Gd~-----v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~----~~~v~l~~~~r~~~d 203 (258)
+|. .+++||. |.++||||.+..+...++++++||||+||||++++++++.++..+ .++++++|++|+.+|
T Consensus 399 ~L~~~l~~gd~i~~~~V~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~D 478 (702)
T PLN02292 399 KLYHMLSSSDQIDRLAVSVEGPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSSD 478 (702)
T ss_pred HHHHhCCCCCccccceEEEECCccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHH
Confidence 884 6788884 679999998654444568999999999999999999999876321 268999999999999
Q ss_pred cccHHHHHH-------HHhhCCCCeEEEEEEcCCCCCC-CCccccccHHHHhhhCCCCC
Q 042788 204 ILLKDELDS-------FATNSPNRFKVYYVLSQPTEVW-NGGIGHVSKEMIQMHCPTPA 254 (258)
Q Consensus 204 ~~~~~eL~~-------l~~~~~~~~~v~~~~s~~~~~~-~~~~G~i~~~~l~~~~~~~~ 254 (258)
+.+.|++.. ++++. + +++..+++++++.. .+..| +++++++..+.|.
T Consensus 479 l~~ld~l~~e~~~~~~l~~~~-~-~~i~iyvTr~~~~~~~~~~~--~~~~~~~~~~~p~ 533 (702)
T PLN02292 479 LSMLDLILPTSGLETELSSFI-D-IQIKAFVTREKEAGVKESTG--NMNIIKTLWFKPN 533 (702)
T ss_pred hhHHHHHHHhhhhHHHHhhcC-C-ceEEEEEeCCCCCCCccccc--chhhhhhhcCCCC
Confidence 998876543 22333 3 77887787765432 33445 8888988877666
No 62
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.95 E-value=5.4e-27 Score=198.05 Aligned_cols=158 Identities=13% Similarity=0.173 Sum_probs=130.9
Q ss_pred EEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCC-------------------CeeeeeccccccCCCCCEE
Q 042788 59 LTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEG-------------------NEVIRPYTPITLDSDIGYF 119 (258)
Q Consensus 59 v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g-------------------~~~~R~ySi~s~~~~~~~l 119 (258)
|++++.+++++++++|+.++......|.||||+.|.++ .++ ....|+||+++.+.+.+.+
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l 79 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFP-DPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGEL 79 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEec-CCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEE
Confidence 57899999999999999887532367899999999987 332 4678999999998777999
Q ss_pred EEEEEEecC-CccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEe
Q 042788 120 ELVVKMYPK-GRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYAN 198 (258)
Q Consensus 120 ~~~Vk~~~~-G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~ 198 (258)
+|.|+.+++ |.+|+|++++++||+|.+.||+|.|...+ ..+++|||||||||||+++|++++... .+++++|++
T Consensus 80 ~~~v~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~-~~~~~vlia~GtGi~p~~~il~~~~~~----~~~~~~~~~ 154 (235)
T cd06193 80 DIDFVLHGDEGPASRWAASAQPGDTLGIAGPGGSFLPPP-DADWYLLAGDETALPAIAAILEELPAD----ARGTALIEV 154 (235)
T ss_pred EEEEEeCCCCCchHHHHhhCCCCCEEEEECCCCCCCCCC-CcceEEEEeccchHHHHHHHHHhCCCC----CeEEEEEEE
Confidence 999998877 99999999999999999999999987654 457899999999999999999988653 589999999
Q ss_pred CCCcccccHHHHHHHHhhCCCCeEEEEEEcCC
Q 042788 199 VTVGDILLKDELDSFATNSPNRFKVYYVLSQP 230 (258)
Q Consensus 199 r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~ 230 (258)
++.+|+...++ .++ ++++++.+++
T Consensus 155 ~~~~d~~~l~~-------~~~-~~~~~~~~~~ 178 (235)
T cd06193 155 PDAADEQPLPA-------PAG-VEVTWLHRGG 178 (235)
T ss_pred CCHHHccccCC-------CCC-cEEEEEeCCC
Confidence 99866543322 224 7777776644
No 63
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.94 E-value=1.8e-26 Score=223.97 Aligned_cols=175 Identities=21% Similarity=0.302 Sum_probs=147.4
Q ss_pred EEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccc
Q 042788 57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFR 136 (258)
Q Consensus 57 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~ 136 (258)
++|++++.++++++.++|+.|.. ...++||||+.|+++ ..+ ..|||||++.+.+.+.++|+||. .|.+|.+|+
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~--~~~~~pGQFv~l~~~-~~~--~~rp~Si~~~~~~~g~i~~~vk~--vG~~T~~L~ 74 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLI--AKSRKPGQFVIVRVG-EKG--ERIPLTIADADPEKGTITLVIQE--VGLSTTKLC 74 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCch--hccCCCCeeEEEEeC-CCC--CeeEEEeeeeCCCCCEEEEEEEE--cCchHHHHh
Confidence 47999999999999999998754 357999999999987 444 36899999999877999999998 699999999
Q ss_pred cCCCCCEE-EEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHh
Q 042788 137 EMHEGEYL-PVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFAT 215 (258)
Q Consensus 137 ~l~~Gd~v-~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~ 215 (258)
++++||.+ .+.||+|++.... ..++++|||||+||||++++++++.+++ .+++++|++|+.+++++.+||++++.
T Consensus 75 ~l~~Gd~v~~v~GP~G~~~~~~-~~~~~llvaGG~GiaPl~~l~~~l~~~~---~~v~l~~g~r~~~~l~~~~el~~~~~ 150 (752)
T PRK12778 75 ELNEGDYITDVVGPLGNPSEIE-NYGTVVCAGGGVGVAPMLPIVKALKAAG---NRVITILGGRSKELIILEDEMRESSD 150 (752)
T ss_pred cCCCCCEeCeEeCCCCCCccCC-CCCeEEEEECCEeHHHHHHHHHHHHHCC---CeEEEEeccCCHHHhhhHHHHHhhcC
Confidence 99999999 7999999965443 3479999999999999999999998875 58999999999999999999998864
Q ss_pred hCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCC
Q 042788 216 NSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT 252 (258)
Q Consensus 216 ~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~ 252 (258)
+ +.+ .+ +++|.|..|++++ .+++.+++
T Consensus 151 ~----~~~---~t--~dg~~g~~G~v~~-~l~~~~~~ 177 (752)
T PRK12778 151 E----VII---MT--DDGSYGRKGLVTD-GLEEVIKR 177 (752)
T ss_pred e----EEE---EE--CCCCCCCcccHHH-HHHHHhhc
Confidence 3 322 22 4668888999988 46666543
No 64
>PLN02631 ferric-chelate reductase
Probab=99.94 E-value=1.7e-25 Score=211.28 Aligned_cols=171 Identities=14% Similarity=0.279 Sum_probs=139.1
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCC-CCCEEEEEEEEecCCccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDS-DIGYFELVVKMYPKGRMAHH 134 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~-~~~~l~~~Vk~~~~G~~S~~ 134 (258)
..++++.+.+++++.++++..+.. ..+.||||+.+++| ..+..++||||++|.|+ +++.++|.||. .|.+|++
T Consensus 309 ~~~lv~~~~l~~d~l~l~~~~~~~---~~~~PGQfvfL~~p-~~s~~q~HPFSIaSsp~~~~~~L~~~IK~--~Gg~T~~ 382 (699)
T PLN02631 309 RSRLVSARILPSDNLELTFSKTPG---LHYTPTSILFLHVP-SISKLQWHPFTITSSSNLEKDTLSVVIRR--QGSWTQK 382 (699)
T ss_pred eEEEEEEEEeCCCeEEEEEEcCCC---CcCCCCceEEEEec-cCCccceEEEEEeccCCCCCCEEEEEEEc--CChHHHH
Confidence 467888888999999999986543 68999999999999 55667899999999874 45789999998 7999999
Q ss_pred cc-cCCC-CC--EEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCC----CCeEEEEEEeCCCccccc
Q 042788 135 FR-EMHE-GE--YLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKD----KTNVHLIYANVTVGDILL 206 (258)
Q Consensus 135 L~-~l~~-Gd--~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~----~~~v~l~~~~r~~~d~~~ 206 (258)
|. .++. |+ ++.++||||.+..+...++++||||||+||||++++++++..+..+ .++++|+|++|+.+|+.+
T Consensus 383 L~~~l~~~g~~i~V~VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~dL~f 462 (699)
T PLN02631 383 LYTHLSSSIDSLEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYHDLAF 462 (699)
T ss_pred HHHhhhcCCCeeEEEEECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHHHhhh
Confidence 84 4654 45 6888899998655545678999999999999999999999865321 247999999999999999
Q ss_pred HHHHHHHH-----hhCCCCeEEEEEEcCCCCC
Q 042788 207 KDELDSFA-----TNSPNRFKVYYVLSQPTEV 233 (258)
Q Consensus 207 ~~eL~~l~-----~~~~~~~~v~~~~s~~~~~ 233 (258)
.|||+.+. -+..+ +++..++||+++.
T Consensus 463 ~deL~~l~~~~~~l~~~n-i~i~iyVTR~~~~ 493 (699)
T PLN02631 463 LDLIFPLDISVSDISRLN-LRIEAYITREDKK 493 (699)
T ss_pred HHHHhhhccchhhhhcCc-eEEEEEEcCCCCC
Confidence 99998631 11235 9999999997543
No 65
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.94 E-value=4.6e-26 Score=188.93 Aligned_cols=147 Identities=21% Similarity=0.293 Sum_probs=122.7
Q ss_pred EEEEeC-CCEeEEEEECCCCCccCCCCCCcEEEEEEecCC-CCeeeeeccccccCCC-CCEEEEEEEEecCCcccccccc
Q 042788 61 KRTPIS-HNTAKFRFALPKSTSILGLPVGQHILCRGKDSE-GNEVIRPYTPITLDSD-IGYFELVVKMYPKGRMAHHFRE 137 (258)
Q Consensus 61 ~~~~~~-~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~-g~~~~R~ySi~s~~~~-~~~l~~~Vk~~~~G~~S~~L~~ 137 (258)
.++.+. +++++++|+.+.. ..|.||||+.|+++ .. +...+|||||++.+.+ .+.++|+||.. +|..++.+..
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~---~~~~pGq~v~l~~~-~~~~~~~~hpfsias~~~~~~~~i~~~vk~~-~G~~t~~~~~ 77 (210)
T cd06186 3 TVELLPDSDVIRLTIPKPKP---FKWKPGQHVYLNFP-SLLSFWQSHPFTIASSPEDEQDTLSLIIRAK-KGFTTRLLRK 77 (210)
T ss_pred EEEEecCCCEEEEEEecCCC---CccCCCCEEEEEeC-CCCCCcccCCcEeeeCCCCCCCEEEEEEEec-CChHHHHHHH
Confidence 344555 8999999998753 78999999999998 44 5567899999999876 58999999985 3777777777
Q ss_pred CC------CCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCC---CCCeEEEEEEeCCCccc-ccH
Q 042788 138 MH------EGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPK---DKTNVHLIYANVTVGDI-LLK 207 (258)
Q Consensus 138 l~------~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~---~~~~v~l~~~~r~~~d~-~~~ 207 (258)
++ .|+++.++||+|.+......+++++|||||+||||++++++++..+.. ...+++++|++|+.+++ .|.
T Consensus 78 ~~~~~~~~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~~~~~~~ 157 (210)
T cd06186 78 ALKSPGGGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDLEWFL 157 (210)
T ss_pred HHhCcCCCceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHHHhHHHH
Confidence 76 899999999999976334457899999999999999999999987632 35789999999999995 789
Q ss_pred HHHHH
Q 042788 208 DELDS 212 (258)
Q Consensus 208 ~eL~~ 212 (258)
++|++
T Consensus 158 ~~l~~ 162 (210)
T cd06186 158 DELRA 162 (210)
T ss_pred HHHHh
Confidence 99975
No 66
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.94 E-value=3e-25 Score=218.13 Aligned_cols=184 Identities=19% Similarity=0.288 Sum_probs=150.5
Q ss_pred CcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccc
Q 042788 53 NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA 132 (258)
Q Consensus 53 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S 132 (258)
.+..++|++++.++++++.++|+.|.. ...++||||+.|+++ .++. .|||||++.+.+++.++|+||. .|.+|
T Consensus 647 ~~~~~~I~~~~~lt~dv~~~~l~~p~~--~~~~~PGQFv~L~~~-~~ge--~rP~SIas~~~~~g~i~l~Vk~--vG~~T 719 (944)
T PRK12779 647 GQIPQTIVGKVQLAGGIVEFTVRAPMV--ARSAQAGQFVRVLPW-EKGE--LIPLTLADWDAEKGTIDLVVQG--MGTSS 719 (944)
T ss_pred cceEEEEEEEEEecCCEEEEEEeCCCc--cccCCCCceEEEEeC-CCCC--EEeEEccCCCCCCCEEEEEEEe--eccHH
Confidence 467899999999999999999998764 357999999999976 4443 5899999988777899999998 58888
Q ss_pred cccccCCCCCEEE-Eecccceee-ecC-CCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHH
Q 042788 133 HHFREMHEGEYLP-VKGPKGRLK-YKV-GQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDE 209 (258)
Q Consensus 133 ~~L~~l~~Gd~v~-v~gP~G~f~-~~~-~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~e 209 (258)
.+|+++++||.+. +.||+|.+. ++. ...++++|||||+||||++++++++.+.+ .+++++|++|+.+++++.++
T Consensus 720 ~~L~~lk~Gd~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g---~~V~li~G~Rs~edl~~~de 796 (944)
T PRK12779 720 LEINRMAIGDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG---NHVTLISGFRAKEFLFWTGD 796 (944)
T ss_pred HHHhcCCCcCEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC---CCEEEEEEeCCHHHhhhHHH
Confidence 8899999999995 999999953 332 22368999999999999999999998765 57999999999999998766
Q ss_pred ---HHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhC
Q 042788 210 ---LDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHC 250 (258)
Q Consensus 210 ---L~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~ 250 (258)
|++|+++++++++++++. +++|.|.+|++++. +++.+
T Consensus 797 l~~L~~la~~~~~~~~v~~tt---ddgs~G~~G~Vt~~-l~~ll 836 (944)
T PRK12779 797 DERVGKLKAEFGDQLDVIYTT---NDGSFGVKGFVTGP-LEEML 836 (944)
T ss_pred HHHHHHHHHHcCCCeEEEEEe---cCCCCCCccccChH-HHHHH
Confidence 566777788656666542 35677888999974 44443
No 67
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.92 E-value=1.6e-24 Score=214.49 Aligned_cols=175 Identities=18% Similarity=0.316 Sum_probs=145.2
Q ss_pred EEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc-
Q 042788 57 FKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF- 135 (258)
Q Consensus 57 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L- 135 (258)
++|++++.++++++.++|+.|+. ...++||||+.|+++ ..+ ..|||||++.+.+.+.++|.|+. .|.+|++|
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~--a~~~~PGQFV~l~~~-~~~--errplSIa~~~~~~g~i~l~vk~--vG~~T~~L~ 74 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDV--AASAEPGHFVMLRLY-EGA--ERIPLTVADFDRKKGTITMVVQA--LGKTTREMM 74 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCc--ccCCCCCeeEEEEeC-CCC--eeEEEEecCcCCCCCEEEEEEEe--cCcHHHHHH
Confidence 47999999999999999998876 378999999999986 333 36999999988777899999998 69999998
Q ss_pred ccCCCCCEE-EEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHH
Q 042788 136 REMHEGEYL-PVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFA 214 (258)
Q Consensus 136 ~~l~~Gd~v-~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~ 214 (258)
.++++||.+ .+.||+|.+.... ..++++|||||+||||++++++++.+.+ .+++++|++|+.+++++.+||+++.
T Consensus 75 ~~lk~Gd~l~~v~GPlG~~~~~~-~~~~vllVaGGiGIAPl~s~~r~l~~~g---~~v~li~g~R~~~~l~~~del~~~~ 150 (1006)
T PRK12775 75 TKFKAGDTFEDFVGPLGLPQHID-KAGHVVLVGGGLGVAPVYPQLRAFKEAG---ARTTGIIGFRNKDLVFWEDKFGKYC 150 (1006)
T ss_pred hcCCCCCEEeeeecCCCCCCCCC-CCCeEEEEEEhHHHHHHHHHHHHHHhCC---CcEEEEEeCCChHHcccHHHHHhhc
Confidence 699999999 7999999854322 3478999999999999999999998875 5799999999999999999998765
Q ss_pred hhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCC
Q 042788 215 TNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT 252 (258)
Q Consensus 215 ~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~ 252 (258)
.+ +.+. + +++|.|.+|++++. +.+.+++
T Consensus 151 ~~----~~v~---t--ddgs~G~~G~vt~~-l~~~l~~ 178 (1006)
T PRK12775 151 DD----LIVC---T--DDGSYGKPGFVTAA-LKEVCEK 178 (1006)
T ss_pred Cc----EEEE---E--CCCCCCCCCChHHH-HHHHhcc
Confidence 32 3222 2 45678889999884 5666544
No 68
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.92 E-value=2.6e-23 Score=197.46 Aligned_cols=168 Identities=17% Similarity=0.249 Sum_probs=132.2
Q ss_pred EEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCC-CCCEEEEEEEEecCCccccccc
Q 042788 58 KLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDS-DIGYFELVVKMYPKGRMAHHFR 136 (258)
Q Consensus 58 ~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~-~~~~l~~~Vk~~~~G~~S~~L~ 136 (258)
.+++.+..++++.++++..+.. ..|+||||+++++| ..+..++|||||+|.|. +++.+++.||. .|.+|+.|.
T Consensus 315 ~vvs~~~~~~~~v~l~i~r~~~---~~f~PGQfV~L~vp-~~s~~q~HPFSIaS~p~~~~~~l~~~IK~--~gG~T~~L~ 388 (722)
T PLN02844 315 CILSARLFPCKAIELVLPKDPG---LKYAPTSVIFMKIP-SISRFQWHPFSITSSSNIDDHTMSVIIKC--EGGWTNSLY 388 (722)
T ss_pred EEEEEEEecCCEEEEEEECCCC---CCcCCCeeEEEEEC-CCCceeEEEEEeecCCCCCCCeEEEEEEe--CCCchHHHH
Confidence 4556677788998888876543 78999999999998 55667899999999763 55789999998 567776652
Q ss_pred -c----CCCC------CEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCC----CCCeEEEEEEeCCC
Q 042788 137 -E----MHEG------EYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPK----DKTNVHLIYANVTV 201 (258)
Q Consensus 137 -~----l~~G------d~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~----~~~~v~l~~~~r~~ 201 (258)
. +++| .++.++||||.+..+...++++++||||+||||++++++++.+++. ..+++.|+|++|+.
T Consensus 389 ~~i~~~l~~g~~~~~~~~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~ 468 (722)
T PLN02844 389 NKIQAELDSETNQMNCIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKS 468 (722)
T ss_pred HHHHhhccCCCCcccceEEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCH
Confidence 2 3345 3789999999976555567899999999999999999999987532 13579999999999
Q ss_pred cccccHHHHHH-----HHhhCCCCeEEEEEEcCCCCC
Q 042788 202 GDILLKDELDS-----FATNSPNRFKVYYVLSQPTEV 233 (258)
Q Consensus 202 ~d~~~~~eL~~-----l~~~~~~~~~v~~~~s~~~~~ 233 (258)
+|+.+.|++.. +.++ .+ +++++++||++..
T Consensus 469 ~dL~~~del~~~l~~~~~~~-~~-lkl~iyVTRE~~~ 503 (722)
T PLN02844 469 QDICLLNPISSLLLNQSSNQ-LN-LKLKVFVTQEEKP 503 (722)
T ss_pred HHhhhHHHHHHHhHHhHHHh-cC-ceEEEEECCCCCC
Confidence 99999999863 2222 24 8999999987654
No 69
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.89 E-value=5.3e-23 Score=183.79 Aligned_cols=151 Identities=17% Similarity=0.187 Sum_probs=124.5
Q ss_pred CCCCCCcEEEEEEecCCCCeeeeeccccccCCC-CCEEEEEEEEe--------cCCcccccccc-CCCCCEEEEeccc-c
Q 042788 83 LGLPVGQHILCRGKDSEGNEVIRPYTPITLDSD-IGYFELVVKMY--------PKGRMAHHFRE-MHEGEYLPVKGPK-G 151 (258)
Q Consensus 83 ~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~-~~~l~~~Vk~~--------~~G~~S~~L~~-l~~Gd~v~v~gP~-G 151 (258)
..+.||||+.+..+ ...|+|||+|.|.. ++.++|+|+.. +.|.+|.||++ +++||+|.+.+|. |
T Consensus 130 ~~~~~gq~l~l~~~-----~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~~Gd~v~v~~~~~~ 204 (360)
T cd06199 130 ARLTAEELLDLLRP-----LQPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRLKEGDTVPVFVQPNP 204 (360)
T ss_pred CCCCHHHHHHhCcC-----CCCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcCCCCCEEEEEEecCC
Confidence 57899999999633 25799999999964 57899999875 57999999986 4699999999755 5
Q ss_pred eeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEEEcCC
Q 042788 152 RLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYVLSQP 230 (258)
Q Consensus 152 ~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~~s~~ 230 (258)
.|.++.+...+++|||+||||||+++++++..... ...+++|+|++|+. +|++|.+||+++++++++ ++++.++|++
T Consensus 205 ~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~-~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~-~~~~~a~Sr~ 282 (360)
T cd06199 205 HFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG-AKGKNWLFFGERHFATDFLYQDELQQWLKDGVL-TRLDTAFSRD 282 (360)
T ss_pred CcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc-CCCcEEEEEcCCCCccchhHHHHHHHHHHcCCC-eEEEEEEccC
Confidence 69887665689999999999999999999887653 34689999999997 699999999999988777 8999999986
Q ss_pred CCCCCCccccccHH
Q 042788 231 TEVWNGGIGHVSKE 244 (258)
Q Consensus 231 ~~~~~~~~G~i~~~ 244 (258)
.+. .+++++.
T Consensus 283 ~~~----~~yVq~~ 292 (360)
T cd06199 283 QAE----KVYVQDR 292 (360)
T ss_pred CCC----CccHHHH
Confidence 542 4566553
No 70
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.89 E-value=1.5e-22 Score=148.18 Aligned_cols=99 Identities=31% Similarity=0.655 Sum_probs=90.2
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF 135 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L 135 (258)
+++|++++.++++++.++|+.++......|.||||+.|+++ .++....|+|||++.+.+++.++|+||.+++|.+|+||
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~-~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S~~L 79 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVP-INGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVSRYL 79 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEE-ETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHHHHH
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEc-cCCcceecceeEeeecCCCCcEEEEEEeccCCHHHHHH
Confidence 58999999999999999999987655678999999999999 67778999999999998888999999999999999999
Q ss_pred ccCCCCCEEEEecccceeee
Q 042788 136 REMHEGEYLPVKGPKGRLKY 155 (258)
Q Consensus 136 ~~l~~Gd~v~v~gP~G~f~~ 155 (258)
+++++||+|.++||+|+|.+
T Consensus 80 ~~l~~Gd~v~i~gP~G~f~y 99 (99)
T PF00970_consen 80 HQLKPGDEVEIRGPYGNFTY 99 (99)
T ss_dssp HTSCTTSEEEEEEEESSEEE
T ss_pred HhCCCCCEEEEEEcccccCC
Confidence 99999999999999999875
No 71
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.89 E-value=1.7e-22 Score=182.06 Aligned_cols=139 Identities=17% Similarity=0.130 Sum_probs=117.6
Q ss_pred CeeeeeccccccCCC-CCEEEEEEEEe---------cCCccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCc
Q 042788 101 NEVIRPYTPITLDSD-IGYFELVVKMY---------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGT 170 (258)
Q Consensus 101 ~~~~R~ySi~s~~~~-~~~l~~~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGt 170 (258)
....|+|||+|+|.. ++.++|+|+.. +.|.+|+||+++++||+|.+.+|.|.|.++.+..+++||||+||
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p~g~F~lp~~~~~plImIa~Gt 240 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKSSFKLPKDPKKPIIMVGPGT 240 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEECCcccCCCCCCCCEEEEcCCc
Confidence 356799999999963 58999999976 46999999999999999999999999988766568999999999
Q ss_pred cHHHHHHHHHHHHhC---CCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788 171 GITPMFQLTRAILEN---PKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE 244 (258)
Q Consensus 171 GItp~~sil~~l~~~---~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~ 244 (258)
||||+++++++.... +....++.|+|++|+. +|++|.+||+++++..+. +++++++|+++.. +|++++.
T Consensus 241 GIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~-~~~~~a~Srd~~~----~~yVq~~ 313 (382)
T cd06207 241 GLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVL-TTLGTAFSRDQPK----KVYVQDL 313 (382)
T ss_pred cHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCC-ceEEEEecCCCCC----ceEhHHH
Confidence 999999999987532 2245789999999999 899999999999988777 8999999986542 4666653
No 72
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.88 E-value=3.6e-22 Score=180.59 Aligned_cols=143 Identities=16% Similarity=0.215 Sum_probs=120.2
Q ss_pred eeeeeccccccCCC-CCEEEEEEEEecC---CccccccccCC-----CCCEEEEec-ccceeeecCC-CCceEEEEEcCc
Q 042788 102 EVIRPYTPITLDSD-IGYFELVVKMYPK---GRMAHHFREMH-----EGEYLPVKG-PKGRLKYKVG-QARAFGMIAGGT 170 (258)
Q Consensus 102 ~~~R~ySi~s~~~~-~~~l~~~Vk~~~~---G~~S~~L~~l~-----~Gd~v~v~g-P~G~f~~~~~-~~~~vvliagGt 170 (258)
...|+|||+|+|.. ++.++|+|+..+. |.+|.||++++ +|++|.+.+ |.|.|.++.+ ...+++|||+||
T Consensus 172 ~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~~~~G~~v~i~~~~~g~F~lp~~~~~~piImIa~Gt 251 (398)
T cd06203 172 LQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSASSHGVKVPFYLRSSSRFRLPPDDLRRPIIMVGPGT 251 (398)
T ss_pred CCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhhcCCCCEEEEEEecCCCcCCCCcCCCCCEEEEcCCc
Confidence 45799999999854 5899999998764 99999999887 999999998 6777988655 457999999999
Q ss_pred cHHHHHHHHHHHHhC-----CCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788 171 GITPMFQLTRAILEN-----PKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE 244 (258)
Q Consensus 171 GItp~~sil~~l~~~-----~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~ 244 (258)
||||+++++++.... .....++.|+|++|+. +|++|.+||++++++.+. +++++++|++++.| +.+|||++.
T Consensus 252 GIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~-~~~~~a~SRd~~~~-g~k~yVqd~ 329 (398)
T cd06203 252 GVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGIL-TRLIVAFSRDENDG-STPKYVQDK 329 (398)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCC-ceEEEEECCCCCCC-CCceecchH
Confidence 999999999987651 2234689999999999 699999999999988777 88999999976654 568999875
Q ss_pred HH
Q 042788 245 MI 246 (258)
Q Consensus 245 ~l 246 (258)
+.
T Consensus 330 l~ 331 (398)
T cd06203 330 LE 331 (398)
T ss_pred HH
Confidence 44
No 73
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.87 E-value=3.2e-22 Score=180.29 Aligned_cols=151 Identities=19% Similarity=0.242 Sum_probs=121.0
Q ss_pred CCCCCcEEEEEEecCCCCeeeeeccccccCCC-CCEEEEEEEEec----------CCccccccccCCCCCEEEE--eccc
Q 042788 84 GLPVGQHILCRGKDSEGNEVIRPYTPITLDSD-IGYFELVVKMYP----------KGRMAHHFREMHEGEYLPV--KGPK 150 (258)
Q Consensus 84 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~-~~~l~~~Vk~~~----------~G~~S~~L~~l~~Gd~v~v--~gP~ 150 (258)
....||++.+. | ....|+|||+|+|.. ++.++++|+..+ .|.+|+||+++++||+|.+ .+|.
T Consensus 146 ~~~~~~~l~~~-p----~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~i~~p~ 220 (384)
T cd06206 146 ALPLATFLAML-P----PMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVSVRPSH 220 (384)
T ss_pred CCCHHHHHHhC-c----ccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCCeEEEEEecCC
Confidence 45679999885 4 136799999999843 566777776642 6889999999999999985 5899
Q ss_pred ceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhC---CCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEE
Q 042788 151 GRLKYKVGQARAFGMIAGGTGITPMFQLTRAILEN---PKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYV 226 (258)
Q Consensus 151 G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~---~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~ 226 (258)
|.|.++.+..++++||||||||||+++++++.... +....+++|+|++|+. +|++|.+||+++++ .++ ++++++
T Consensus 221 g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~-~~~-~~l~~a 298 (384)
T cd06206 221 SAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEA-AGV-VSVRRA 298 (384)
T ss_pred CccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHH-CCC-eEEEEE
Confidence 99988766668999999999999999999987642 2234689999999999 79999999999987 455 999999
Q ss_pred EcCCCCCCCCccccccHH
Q 042788 227 LSQPTEVWNGGIGHVSKE 244 (258)
Q Consensus 227 ~s~~~~~~~~~~G~i~~~ 244 (258)
+|+++++ .+|++++.
T Consensus 299 ~Sr~~~~---~~~yVq~~ 313 (384)
T cd06206 299 YSRPPGG---GCRYVQDR 313 (384)
T ss_pred ecccCCC---CCEechhh
Confidence 9986543 24677654
No 74
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.87 E-value=3e-22 Score=189.16 Aligned_cols=153 Identities=20% Similarity=0.189 Sum_probs=125.8
Q ss_pred CCCCCCcEEEEEEecCCCCeeeeeccccccCC-CCCEEEEEEEEe--------cCCcccccccc-CCCCCEEEEeccc-c
Q 042788 83 LGLPVGQHILCRGKDSEGNEVIRPYTPITLDS-DIGYFELVVKMY--------PKGRMAHHFRE-MHEGEYLPVKGPK-G 151 (258)
Q Consensus 83 ~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~-~~~~l~~~Vk~~--------~~G~~S~~L~~-l~~Gd~v~v~gP~-G 151 (258)
..+.||||+.+..+ ...|+|||+|+|. .++.++|+|+.. +.|.+|.||.+ +++||+|.+.+|. |
T Consensus 367 ~~~~~gq~v~ll~~-----~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~ 441 (597)
T TIGR01931 367 ADLDAEQLISLLRP-----LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERLKEGDTVPVYIEPND 441 (597)
T ss_pred CCCCHHHHHHhCcc-----cCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhCCCCCEEEEEEeeCC
Confidence 57899999998654 2579999999985 357899999854 57999999975 9999999999865 4
Q ss_pred eeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCC-CcccccHHHHHHHHhhCCCCeEEEEEEcCC
Q 042788 152 RLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVT-VGDILLKDELDSFATNSPNRFKVYYVLSQP 230 (258)
Q Consensus 152 ~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~-~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~ 230 (258)
.|.++.+..++++|||+||||||+++++++....+ ...+++|+|++|+ .+|++|.+||+++.++... .++..++||+
T Consensus 442 ~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~-~~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l-~~l~~afSRd 519 (597)
T TIGR01931 442 NFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDG-AKGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVL-TKMDLAFSRD 519 (597)
T ss_pred cccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHcc-CCCCEEEEECCCCCCcchhHHHHHHHHHHcCCC-ceeEEEEecC
Confidence 69887666689999999999999999999988763 3468999999999 7799999999999888766 6788888884
Q ss_pred CCCCCCccccccHHHH
Q 042788 231 TEVWNGGIGHVSKEMI 246 (258)
Q Consensus 231 ~~~~~~~~G~i~~~~l 246 (258)
. +.+||+++.+.
T Consensus 520 ~----~~k~yVqd~l~ 531 (597)
T TIGR01931 520 Q----AEKIYVQHRIR 531 (597)
T ss_pred C----CCCccHHHHHH
Confidence 2 23577776543
No 75
>PRK06214 sulfite reductase; Provisional
Probab=99.85 E-value=1.5e-19 Score=167.34 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=107.0
Q ss_pred eeeccccccCC-CCCEEEEEEEEe--------cCCccccccc-cCCCCCEEEEec--ccceeeecCCCCceEEEEEcCcc
Q 042788 104 IRPYTPITLDS-DIGYFELVVKMY--------PKGRMAHHFR-EMHEGEYLPVKG--PKGRLKYKVGQARAFGMIAGGTG 171 (258)
Q Consensus 104 ~R~ySi~s~~~-~~~~l~~~Vk~~--------~~G~~S~~L~-~l~~Gd~v~v~g--P~G~f~~~~~~~~~vvliagGtG 171 (258)
.|+|||+|.|. +++.++|+|+.. ..|.+|.||+ ++++||+|.+.+ |.| |.++.+...++||||+|||
T Consensus 316 pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~~Gd~V~v~i~~~~g-F~lp~~~~~PiImIg~GTG 394 (530)
T PRK06214 316 PRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLAPGTRVRVYVQKAHG-FALPADPNTPIIMVGPGTG 394 (530)
T ss_pred cEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcCCCCCEEEEEecCCCC-CccCCCCCCCEEEEcCCee
Confidence 59999999985 368899999864 4699999996 799999998864 445 8876555579999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEEEEEeCC-CcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccH
Q 042788 172 ITPMFQLTRAILENPKDKTNVHLIYANVT-VGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSK 243 (258)
Q Consensus 172 Itp~~sil~~l~~~~~~~~~v~l~~~~r~-~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~ 243 (258)
||||++++++..... ...+++|+|++|+ .+|++|.+||+++.+..+. .+++..+||+... ++|+++
T Consensus 395 IAPfrsfLq~r~~~~-~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l-~~l~~afSRd~~~----k~YVQ~ 461 (530)
T PRK06214 395 IAPFRAFLHERAATK-APGRNWLFFGHQRSATDFFYEDELNGLKAAGVL-TRLSLAWSRDGEE----KTYVQD 461 (530)
T ss_pred HHHHHHHHHHHHHhc-CCCCeEEEEEecCChhhhHHHHHHHHHHHhCCc-eEEEEEEecCCCC----CCchhh
Confidence 999999999876542 2367899999965 6699999999999988776 7788888886432 345554
No 76
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.84 E-value=1.3e-20 Score=171.38 Aligned_cols=138 Identities=16% Similarity=0.183 Sum_probs=113.2
Q ss_pred eeeeeccccccCC-CCCEEEEEEEEecC---------CccccccccCC---------------------CCCEEEEeccc
Q 042788 102 EVIRPYTPITLDS-DIGYFELVVKMYPK---------GRMAHHFREMH---------------------EGEYLPVKGPK 150 (258)
Q Consensus 102 ~~~R~ySi~s~~~-~~~~l~~~Vk~~~~---------G~~S~~L~~l~---------------------~Gd~v~v~gP~ 150 (258)
...|+|||+|+|. +++.++++|+..+. |.+|+||+++. +||.|.+..|.
T Consensus 176 ~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~~ 255 (416)
T cd06204 176 LQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVRR 255 (416)
T ss_pred CCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEec
Confidence 3579999999995 45789999887543 88999998666 89999999999
Q ss_pred ceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhC---CCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEE
Q 042788 151 GRLKYKVGQARAFGMIAGGTGITPMFQLTRAILEN---PKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYV 226 (258)
Q Consensus 151 G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~---~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~ 226 (258)
|.|.++.+...++||||+||||||+++++++.... +....+++|+|++|+. +|++|.+||++|++.+++ ++++.+
T Consensus 256 g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~-~~l~~a 334 (416)
T cd06204 256 SNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLGGL-LELVTA 334 (416)
T ss_pred CCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccchHHHHHHHHHcCCc-eEEEEE
Confidence 99988766668999999999999999999976432 2234689999999998 799999999999887776 999999
Q ss_pred EcCCCCCCCCccccccHH
Q 042788 227 LSQPTEVWNGGIGHVSKE 244 (258)
Q Consensus 227 ~s~~~~~~~~~~G~i~~~ 244 (258)
+|++++ .+|++++.
T Consensus 335 ~Sr~~~----~k~yVq~~ 348 (416)
T cd06204 335 FSREQP----KKVYVQHR 348 (416)
T ss_pred ECcCCC----CCcchHHH
Confidence 998644 24555543
No 77
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.84 E-value=2.1e-20 Score=169.39 Aligned_cols=140 Identities=17% Similarity=0.159 Sum_probs=112.8
Q ss_pred eeeeeccccccCC-CCCEEEEEEEEe-----------cCCccccccccCCCCCEEEEeccc-ceeeecCCCCceEEEEEc
Q 042788 102 EVIRPYTPITLDS-DIGYFELVVKMY-----------PKGRMAHHFREMHEGEYLPVKGPK-GRLKYKVGQARAFGMIAG 168 (258)
Q Consensus 102 ~~~R~ySi~s~~~-~~~~l~~~Vk~~-----------~~G~~S~~L~~l~~Gd~v~v~gP~-G~f~~~~~~~~~vvliag 168 (258)
...|+|||+|+|. .++.++|+|+.. ..|.+|+||+++++||+|.+.++. |.|.++.+..+++||||+
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~~~F~lp~~~~~piImIa~ 254 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRSAPSFHLPEDPSVPVIMVGP 254 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCCEEEEEEeeCCccCCCCCCCCCEEEEcC
Confidence 4589999999985 356777777653 258899999999999999998754 468887666689999999
Q ss_pred CccHHHHHHHHHHHHhC-------CCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCcccc
Q 042788 169 GTGITPMFQLTRAILEN-------PKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGH 240 (258)
Q Consensus 169 GtGItp~~sil~~l~~~-------~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~ 240 (258)
|||||||++++++.... .....++.|+|++|+. +|.+|.+||+++.+..+. ++++.++|++++. .+||
T Consensus 255 GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~~-~~~~~a~SR~~~~---~k~y 330 (406)
T cd06202 255 GTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGVL-TEVYTALSREPGK---PKTY 330 (406)
T ss_pred CcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCCC-ceEEEEEcCCCCC---CCee
Confidence 99999999999975421 1234689999999999 799999999999988776 7899999986542 3578
Q ss_pred ccHHH
Q 042788 241 VSKEM 245 (258)
Q Consensus 241 i~~~~ 245 (258)
|++.+
T Consensus 331 Vq~~l 335 (406)
T cd06202 331 VQDLL 335 (406)
T ss_pred hhhHH
Confidence 87743
No 78
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.83 E-value=1.7e-20 Score=176.71 Aligned_cols=153 Identities=15% Similarity=0.129 Sum_probs=123.4
Q ss_pred CCCCCCcEEEEEEecCCCCeeeeeccccccCC-CCCEEEEEEEEe--------cCCccccccc-cCCCCCEEEEecccc-
Q 042788 83 LGLPVGQHILCRGKDSEGNEVIRPYTPITLDS-DIGYFELVVKMY--------PKGRMAHHFR-EMHEGEYLPVKGPKG- 151 (258)
Q Consensus 83 ~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~-~~~~l~~~Vk~~--------~~G~~S~~L~-~l~~Gd~v~v~gP~G- 151 (258)
..+.+|||+.+..+ ..+|+|||+|+|. .++.++|+|+.. ..|.+|.||. .+++||+|.+.+|.|
T Consensus 370 ~~~~~~q~l~ll~~-----l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~ 444 (600)
T PRK10953 370 AQLDAEQLIGLLRP-----LTPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRLEEEGEVRVFIEHND 444 (600)
T ss_pred CCCCHHHHHHhCCC-----CCCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcCCCCCEEEEEeccCC
Confidence 36789999988644 2579999999984 456788887542 3688899996 699999999999876
Q ss_pred eeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCC-CcccccHHHHHHHHhhCCCCeEEEEEEcCC
Q 042788 152 RLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVT-VGDILLKDELDSFATNSPNRFKVYYVLSQP 230 (258)
Q Consensus 152 ~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~-~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~ 230 (258)
.|.++.+...++||||+||||||+++++++....+ ...+++|+|++|+ ..|++|.+||+++.+.... .++...+||+
T Consensus 445 ~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~-~~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l-~~l~~afSRd 522 (600)
T PRK10953 445 NFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADG-APGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLL-TRIDLAWSRD 522 (600)
T ss_pred cccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcC-CCCCeEEEeeccCCccchhHHHHHHHHHHcCCc-ceEEEEECCC
Confidence 59887666689999999999999999999988763 3468999999999 6799999999999988664 5688888886
Q ss_pred CCCCCCccccccHHHH
Q 042788 231 TEVWNGGIGHVSKEMI 246 (258)
Q Consensus 231 ~~~~~~~~G~i~~~~l 246 (258)
+. .++||++.+.
T Consensus 523 ~~----~k~YVQ~~l~ 534 (600)
T PRK10953 523 QK----EKIYVQDKLR 534 (600)
T ss_pred CC----CCCcHHHHHH
Confidence 43 3567766443
No 79
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=2.8e-18 Score=162.99 Aligned_cols=167 Identities=16% Similarity=0.246 Sum_probs=130.6
Q ss_pred EEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccc
Q 042788 55 KEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHH 134 (258)
Q Consensus 55 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~ 134 (258)
...++.+...+..++.+++++.|. .+.|+||||++|.+| .-...++|||||+|+| +++.+.++||. .|++|+.
T Consensus 355 ~~~~i~~~~llp~~vi~L~~~Kp~---~f~y~~Gqyifv~~p-~ls~~qwHPFTItSsp-~dd~lsvhIk~--~g~wT~~ 427 (646)
T KOG0039|consen 355 KNVKIAKVVLLPSDVLELIMSKPP---GFKYKPGQYIFVNCP-SLSKLEWHPFTITSAP-EDDFLSVHIKA--LGDWTEK 427 (646)
T ss_pred cCceEEEEEEcCCCeEEEEEeCCC---CCCCCCCCEEEEECc-cccccccCCceeecCC-CCCEEEEEEEe--cCcHHHH
Confidence 458899999999999999999885 389999999999999 6677899999999999 56899999999 8999987
Q ss_pred cc-cCC------------CCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCC--------------
Q 042788 135 FR-EMH------------EGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPK-------------- 187 (258)
Q Consensus 135 L~-~l~------------~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~-------------- 187 (258)
|. .+. ..-++.++||||.-..+-..++.+++||||+|+||+.|+++++..+..
T Consensus 428 L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~ 507 (646)
T KOG0039|consen 428 LRNAFSEVSQPPESDKSYPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDS 507 (646)
T ss_pred HHHHHhhhcccccccccccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCcccccccc
Confidence 73 222 133689999999966555678899999999999999999999986521
Q ss_pred -CCCeEEEEEEeCCCcccc-cHHHHHHHHhhCCCC-eEEEEEEc
Q 042788 188 -DKTNVHLIYANVTVGDIL-LKDELDSFATNSPNR-FKVYYVLS 228 (258)
Q Consensus 188 -~~~~v~l~~~~r~~~d~~-~~~eL~~l~~~~~~~-~~v~~~~s 228 (258)
...++.++|.+|...+.. +.+.+.++...+..+ .+++.+.+
T Consensus 508 ~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t 551 (646)
T KOG0039|consen 508 LKLKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVT 551 (646)
T ss_pred ceecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehh
Confidence 224688999988887765 455555554322111 45555554
No 80
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.70 E-value=4.2e-17 Score=135.25 Aligned_cols=135 Identities=21% Similarity=0.278 Sum_probs=108.7
Q ss_pred CCCCCcEEEEEEEEEEeCCCEeEEEEECCCCC-ccCCCCCCcEEEEEEecCCCC--eeeeeccccccC-CCCCEEEEEEE
Q 042788 49 LDPENFKEFKLTKRTPISHNTAKFRFALPKST-SILGLPVGQHILCRGKDSEGN--EVIRPYTPITLD-SDIGYFELVVK 124 (258)
Q Consensus 49 ~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~-~~~~~~pGQ~v~l~~~~~~g~--~~~R~ySi~s~~-~~~~~l~~~Vk 124 (258)
-.|++|.+++|++.+.++.|++.+.+.+.++. ......|||||.+.-. ..|. ..-|-|+.+++. ...+.+.|.||
T Consensus 144 ~~W~G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~-~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr 222 (385)
T KOG3378|consen 144 RGWDGEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWE-IPGLSHKTLREYSLSNRVDTCRNQFRISVR 222 (385)
T ss_pred cCCCCccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeec-CCccchhHHHHHHHhhhhhhhccceeEEEe
Confidence 34678999999999999999999999987763 2356789999998644 4443 223444544433 23478999999
Q ss_pred EecCCccccccc-cCCCCCEEEEecccceeeecC---CCCceEEEEEcCccHHHHHHHHHHHHh
Q 042788 125 MYPKGRMAHHFR-EMHEGEYLPVKGPKGRLKYKV---GQARAFGMIAGGTGITPMFQLTRAILE 184 (258)
Q Consensus 125 ~~~~G~~S~~L~-~l~~Gd~v~v~gP~G~f~~~~---~~~~~vvliagGtGItp~~sil~~l~~ 184 (258)
+...|.+|+|+| ++++||.|.++.|-|+|.++. +...+++++|||+||||+++|++..+.
T Consensus 223 ~~A~G~VS~~~H~~~KVGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~ 286 (385)
T KOG3378|consen 223 RVAGGVVSNFVHDNLKVGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALL 286 (385)
T ss_pred ehhchhhHHHhhccccccceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHh
Confidence 999999999996 899999999999999998753 345889999999999999999987665
No 81
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.68 E-value=4.9e-16 Score=150.70 Aligned_cols=130 Identities=18% Similarity=0.253 Sum_probs=106.9
Q ss_pred EEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCC--C-eeeeeccccccCCCCCEEEEEEEEecCCcc
Q 042788 55 KEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEG--N-EVIRPYTPITLDSDIGYFELVVKMYPKGRM 131 (258)
Q Consensus 55 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g--~-~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~ 131 (258)
..++|++++.++++++.++++.|.. ...++||||+.|+.+ ..+ . ...||+|+++.+.+.+.++|+++. .|.+
T Consensus 791 l~~~Vv~~~~lap~i~~L~l~aP~i--A~~~kPGQFVmL~~~-~~g~~~l~~p~P~SI~~vD~e~g~It~i~rv--VGkg 865 (1028)
T PRK06567 791 LTSRVNKINILDDKTFELIIHSPLA--AKNFKFGQFFRLQNY-SEDAAKLIEPVALSPIDIDVEKGLISFIVFE--VGKS 865 (1028)
T ss_pred hceEEEEEEEecCCEEEEEEeCcch--hhcCCCCceEEEEeC-CCCCccccCceeEEeeccCCCCCEEEEEEEE--EChH
Confidence 4789999999999999999998864 246899999999975 223 2 245799999998888999999999 7999
Q ss_pred ccccccCCCCCEEEEecccce-eeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEE
Q 042788 132 AHHFREMHEGEYLPVKGPKGR-LKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYA 197 (258)
Q Consensus 132 S~~L~~l~~Gd~v~v~gP~G~-f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~ 197 (258)
|+.|+++++||.+.+.||+|+ |..+. .+++++||||+|+|| +++++.+.+ .++..+..
T Consensus 866 T~~Ls~l~~Gd~v~v~GPLG~pF~i~~--~k~vLLVgGGVGiAp---Lak~Lk~~G---~~V~~~~~ 924 (1028)
T PRK06567 866 TSLCKTLSENEKVVLMGPTGSPLEIPQ--NKKIVIVDFEVGNIG---LLKVLKENN---NEVIFVTY 924 (1028)
T ss_pred HHHHhcCCCCCEEEEEcccCCCCCCCC--CCeEEEEEccccHHH---HHHHHHHCC---CeEEEEEc
Confidence 999999999999999999998 66542 478999999999997 557776654 44544443
No 82
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.66 E-value=5e-16 Score=115.25 Aligned_cols=85 Identities=42% Similarity=0.782 Sum_probs=75.7
Q ss_pred EEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788 165 MIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE 244 (258)
Q Consensus 165 liagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~ 244 (258)
||||||||||++++++++.++ ....+++|+|++|+.+|++|.++|+++++++++++++..+ ++++++|.+..|++++.
T Consensus 1 lIagGtGIaP~~s~l~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~v~~~ 78 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLER-NDNRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGRVTDL 78 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHH-TCTSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESSHHHH
T ss_pred CeecceeHHHHHHHHHHHHHh-CCCCCEEEEEEEcccccccchhHHHHHHhhcccccccccc-cccccccCCceeehhHH
Confidence 799999999999999999987 4568999999999999999999999999999987887777 66678888999999998
Q ss_pred HHhhhCC
Q 042788 245 MIQMHCP 251 (258)
Q Consensus 245 ~l~~~~~ 251 (258)
++++.++
T Consensus 79 ~~~~~~~ 85 (109)
T PF00175_consen 79 LLEDLLP 85 (109)
T ss_dssp HHHHHHH
T ss_pred HHHhhcc
Confidence 8776654
No 83
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=99.65 E-value=1.3e-15 Score=142.20 Aligned_cols=135 Identities=18% Similarity=0.217 Sum_probs=108.4
Q ss_pred eeeccccccCCCC-CEEEEEEEEe--------cCCccccccccCCC-CCEEEEecccc-eeeecCCCCceEEEEEcCccH
Q 042788 104 IRPYTPITLDSDI-GYFELVVKMY--------PKGRMAHHFREMHE-GEYLPVKGPKG-RLKYKVGQARAFGMIAGGTGI 172 (258)
Q Consensus 104 ~R~ySi~s~~~~~-~~l~~~Vk~~--------~~G~~S~~L~~l~~-Gd~v~v~gP~G-~f~~~~~~~~~vvliagGtGI 172 (258)
+|.|||+|++... +.++++|... ..|.+|.||.++.+ ||++.+....+ +|.++.+..++++|||.||||
T Consensus 373 PR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~~g~~i~v~v~~n~nf~lp~~~~~PiIMIG~GTGI 452 (587)
T COG0369 373 PRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEEGDTIPVFVQPNKNFRLPEDPETPIIMIGPGTGI 452 (587)
T ss_pred CeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhhhcCCCeEEEEeccCCccccCCCCCCceEEEcCCCCc
Confidence 6999999998543 6677766554 23678999976665 99999997777 588887767999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCeEEEEEEeCC-CcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788 173 TPMFQLTRAILENPKDKTNVHLIYANVT-VGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE 244 (258)
Q Consensus 173 tp~~sil~~l~~~~~~~~~v~l~~~~r~-~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~ 244 (258)
|||++++++...++ ...+.+|+||+|+ ..|++|.+|++++.+..-. +++....||++.. +-||++.
T Consensus 453 APFRafvq~r~~~~-~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~-~~l~~AfSRdq~~----KiYVQd~ 519 (587)
T COG0369 453 APFRAFVQERAANG-AEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVL-TRLDLAFSRDQEE----KIYVQDR 519 (587)
T ss_pred hhHHHHHHHHHhcc-ccCceEEEecCCCCccchhhHHHHHHHHhcCCc-eeEEEEEeecCCC----CccHHHH
Confidence 99999999998875 3458999999999 6699999999998776434 8888999987643 3455554
No 84
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=99.56 E-value=1.1e-14 Score=136.18 Aligned_cols=130 Identities=18% Similarity=0.248 Sum_probs=100.6
Q ss_pred eeeeeccccccCC-CCCEEEEEEEE--ecC--------CccccccccCCCCCEEEEecccce--eeecCCCCceEEEEEc
Q 042788 102 EVIRPYTPITLDS-DIGYFELVVKM--YPK--------GRMAHHFREMHEGEYLPVKGPKGR--LKYKVGQARAFGMIAG 168 (258)
Q Consensus 102 ~~~R~ySi~s~~~-~~~~l~~~Vk~--~~~--------G~~S~~L~~l~~Gd~v~v~gP~G~--f~~~~~~~~~vvliag 168 (258)
..+|+|||+|++. .++.+.+++-. ++. |..|+||.++++|+.+..-.|.+. |.++++...+++|||.
T Consensus 420 L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s~frlp~dp~~PiIMIGp 499 (645)
T KOG1158|consen 420 LQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVPNPVPVGKSMFRLPSDPSTPIIMIGP 499 (645)
T ss_pred ccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccCcceeecccceecCCCCCCcEEEEcC
Confidence 4689999999873 33555554433 322 778999999999999986666776 6777667789999999
Q ss_pred CccHHHHHHHHHHHHhCCC----CCCeEEEEEEeCCCccc-ccHHHHHHHHhhCCCCeEEEEEEcCCCC
Q 042788 169 GTGITPMFQLTRAILENPK----DKTNVHLIYANVTVGDI-LLKDELDSFATNSPNRFKVYYVLSQPTE 232 (258)
Q Consensus 169 GtGItp~~sil~~l~~~~~----~~~~v~l~~~~r~~~d~-~~~~eL~~l~~~~~~~~~v~~~~s~~~~ 232 (258)
|||||||++++++...... -...++|+||+|+.++. +|.+|++++.+..-. +++...+||++.
T Consensus 500 GTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l-~~l~~A~SReq~ 567 (645)
T KOG1158|consen 500 GTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEEYKKAGIL-TRLDVAFSREQT 567 (645)
T ss_pred CCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCCCchHHHHHHHHHHHHHhcCcc-hhheeeeeccCC
Confidence 9999999999998876421 11228999999998855 899999999665444 788899999874
No 85
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=99.52 E-value=4.4e-13 Score=112.78 Aligned_cols=148 Identities=18% Similarity=0.246 Sum_probs=117.9
Q ss_pred CCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCc-EEEEEEecCCCC-------------------eeeeeccccc
Q 042788 52 ENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQ-HILCRGKDSEGN-------------------EVIRPYTPIT 111 (258)
Q Consensus 52 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ-~v~l~~~~~~g~-------------------~~~R~ySi~s 111 (258)
...+.++|+.++.++++..+++|..++........+|+ |+.|.+|...+. ...|.|||.+
T Consensus 15 ~~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~ 94 (265)
T COG2375 15 PRLHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRA 94 (265)
T ss_pred ccceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeee
Confidence 35678999999999999999999998874322335554 999999843222 3489999999
Q ss_pred cCCCCCEEEEEEEEe-cCCccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCC
Q 042788 112 LDSDIGYFELVVKMY-PKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKT 190 (258)
Q Consensus 112 ~~~~~~~l~~~Vk~~-~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~ 190 (258)
.+.+.+++.+-+-.+ +.|.+|.|..+.++||++.+.||.|.+..++ ..+.++|+|.-|++..+..+|+++... .
T Consensus 95 ~d~~~~e~~vDfVlH~~~gpas~WA~~a~~GD~l~i~GP~g~~~p~~-~~~~~lLigDetAlPAIa~iLE~lp~~----~ 169 (265)
T COG2375 95 VDAAAGELDVDFVLHGEGGPASRWARTAQPGDTLTIMGPRGSLVPPE-AADWYLLIGDETALPAIARILETLPAD----T 169 (265)
T ss_pred ecccccEEEEEEEEcCCCCcchhhHhhCCCCCEEEEeCCCCCCCCCC-CcceEEEeccccchHHHHHHHHhCCCC----C
Confidence 988889999977666 8899999999999999999999999965544 468889999999999999999998765 2
Q ss_pred eEEEEEEeCCCccc
Q 042788 191 NVHLIYANVTVGDI 204 (258)
Q Consensus 191 ~v~l~~~~r~~~d~ 204 (258)
+.+.+-.+.+.+|.
T Consensus 170 ~~~a~lev~d~ad~ 183 (265)
T COG2375 170 PAEAFLEVDDAADR 183 (265)
T ss_pred ceEEEEEeCChHHh
Confidence 44555555555543
No 86
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=99.40 E-value=6.5e-13 Score=118.44 Aligned_cols=121 Identities=19% Similarity=0.317 Sum_probs=96.0
Q ss_pred eeeccccccCCCCCEEEEEEEEe---------cCCccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHH
Q 042788 104 IRPYTPITLDSDIGYFELVVKMY---------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITP 174 (258)
Q Consensus 104 ~R~ySi~s~~~~~~~l~~~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp 174 (258)
+|.|||+|.+.. ..++++|..+ ..|.+|+||.+|++|+++.+.---|.+..+.....+++|||-|||+||
T Consensus 368 PR~fSIas~~~~-~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~~i~~~v~~g~l~~p~~~~~PlImVGPGTGvAP 446 (574)
T KOG1159|consen 368 PRAFSIASSPGA-HHLELLVAIVEYKTILKEPRRGLCSNWLASLKPGDEIPIKVRPGTLYFPSDLNKPLIMVGPGTGVAP 446 (574)
T ss_pred cceeeeccCCCC-CceeEEEEEEEEeeeccccccchhHHHHhhcCCCCeEEEEEecCccccCCCCCCCeEEEcCCCCccc
Confidence 699999999876 3488766543 469999999999999999888777887666555689999999999999
Q ss_pred HHHHHHHHHhCCCCCCeEEEEEEeCCCc-ccccHHHHHHHHhhCCCCeEEEEEEcCCCC
Q 042788 175 MFQLTRAILENPKDKTNVHLIYANVTVG-DILLKDELDSFATNSPNRFKVYYVLSQPTE 232 (258)
Q Consensus 175 ~~sil~~l~~~~~~~~~v~l~~~~r~~~-d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~ 232 (258)
+++++++-..++ .....|+||||+.+ |.+|.+|..++.. ..++..+||+++
T Consensus 447 fRa~i~er~~q~--~~~~~lFfGCR~K~~Df~y~~eW~~~~~-----~~~~~AFSRDqe 498 (574)
T KOG1159|consen 447 FRALIQERIYQG--DKENVLFFGCRNKDKDFLYEDEWTELNK-----RAFHTAFSRDQE 498 (574)
T ss_pred HHHHHHHHHhhc--cCCceEEEecccCCccccccchhhhhhc-----chhhhhcccccc
Confidence 999999887543 23447899999987 8889988777654 334446777655
No 87
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=99.36 E-value=2.7e-12 Score=96.48 Aligned_cols=96 Identities=18% Similarity=0.291 Sum_probs=65.5
Q ss_pred EEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCC--------------------eeeeeccccccCCCCC
Q 042788 58 KLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGN--------------------EVIRPYTPITLDSDIG 117 (258)
Q Consensus 58 ~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~--------------------~~~R~ySi~s~~~~~~ 117 (258)
+|++++.+++++++++|..++........+|||+.|.+|..... ...|.||+.+.+.+.+
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~ 80 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETG 80 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCC
Confidence 68999999999999999998765444457999999999833222 2689999999998889
Q ss_pred EEEEEEEEecC-CccccccccCCCCCEEEEeccccee
Q 042788 118 YFELVVKMYPK-GRMAHHFREMHEGEYLPVKGPKGRL 153 (258)
Q Consensus 118 ~l~~~Vk~~~~-G~~S~~L~~l~~Gd~v~v~gP~G~f 153 (258)
++.|.+-.+.. |.++.|+.++++||+|.+.||.|+|
T Consensus 81 ~l~iDfv~Hg~~Gpas~WA~~A~pGd~v~v~gP~g~~ 117 (117)
T PF08021_consen 81 ELDIDFVLHGDEGPASRWARSARPGDRVGVTGPRGSF 117 (117)
T ss_dssp EEEEEEE--SS--HHHHHHHH--TT-EEEEEEEE---
T ss_pred EEEEEEEECCCCCchHHHHhhCCCCCEEEEeCCCCCC
Confidence 99997777766 9999999999999999999999986
No 88
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.34 E-value=9.6e-14 Score=102.58 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=6.4
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCC--CeeeeeccccccCCCCCEEEEEEEEecCCcccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEG--NEVIRPYTPITLDSDIGYFELVVKMYPKGRMAH 133 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g--~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~ 133 (258)
.+++.+++.+.++++++++..+.. ...|+||||++|++| ..+ ..++|||||++.+.+ +.++|.||. .|.+|+
T Consensus 3 ~~~~~~v~~~~~~~v~i~i~~~~~--~~~~~pGq~v~l~~p-~~s~~~~q~HPFTIas~~~~-~~i~l~ik~--~g~~T~ 76 (105)
T PF08022_consen 3 NVRIASVELLPDDVVEITIPKPSS--PFKWKPGQYVFLSFP-SISKWFWQWHPFTIASSPED-NSITLIIKA--RGGWTK 76 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEEcCCCEEEEEEECCCC--CCCCCCceEEEEEEc-CcCcCcccccccEeeccCCC-CEEEEEEEe--CCCchH
Confidence 356788888999999999987764 278999999999998 545 458999999999874 899999998 788998
Q ss_pred ccccC--------CCCCEEEEecccce
Q 042788 134 HFREM--------HEGEYLPVKGPKGR 152 (258)
Q Consensus 134 ~L~~l--------~~Gd~v~v~gP~G~ 152 (258)
.|.+. ..+-++.|+||||.
T Consensus 77 ~L~~~~~~~~~~~~~~~~v~idGPYG~ 103 (105)
T PF08022_consen 77 RLYEHLSESPSKQGNRLRVFIDGPYGA 103 (105)
T ss_dssp --------------------TTSTTSH
T ss_pred HHHHHHhhhcccCCCceEEEEECCCCC
Confidence 87532 23457889999996
No 89
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.02 E-value=3.8e-10 Score=88.97 Aligned_cols=73 Identities=18% Similarity=0.395 Sum_probs=51.3
Q ss_pred CceEEEEEcCccHHHHHHHHHHHHhCC----CCCCeEEEEEEeCCCcccc-cHHHHHHHHhhCC-CCeEEEEEEcCCCC
Q 042788 160 ARAFGMIAGGTGITPMFQLTRAILENP----KDKTNVHLIYANVTVGDIL-LKDELDSFATNSP-NRFKVYYVLSQPTE 232 (258)
Q Consensus 160 ~~~vvliagGtGItp~~sil~~l~~~~----~~~~~v~l~~~~r~~~d~~-~~~eL~~l~~~~~-~~~~v~~~~s~~~~ 232 (258)
++++||||||+||||++++++++.... ...++++|+|.+|+.+++. +.++|.++....+ ..+++.++++++.+
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~ 79 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESS 79 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT---
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCcc
Confidence 478999999999999999999997642 2457899999999999885 4545554433222 23999999987653
No 90
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=85.38 E-value=3.6 Score=35.61 Aligned_cols=106 Identities=16% Similarity=0.235 Sum_probs=58.0
Q ss_pred CcEEEEEEEEEEeCCC--EeEEEEECCCCCccCCCCCCcEEEEE--EecC---CCCeeeeeccccccCCCCCEEEEEEEE
Q 042788 53 NFKEFKLTKRTPISHN--TAKFRFALPKSTSILGLPVGQHILCR--GKDS---EGNEVIRPYTPITLDSDIGYFELVVKM 125 (258)
Q Consensus 53 ~~~~~~v~~~~~~~~~--~~~l~l~~~~~~~~~~~~pGQ~v~l~--~~~~---~g~~~~R~ySi~s~~~~~~~l~~~Vk~ 125 (258)
....++|++++++... ++.=+..+-.. .-....|.+-.-. +.+. +-....|||-+ +.|.+.-.|+.
T Consensus 198 eL~~a~vt~ieplG~gDRVCVDTcsLm~~--gEGMLVGs~s~gmFlVhsEs~espYVAaRPFRV-----NAG~VhaYi~v 270 (376)
T COG1465 198 ELVTATVTEIEPLGSGDRVCVDTCSLMTR--GEGMLVGSQSRGMFLVHSESEESPYVAARPFRV-----NAGAVHAYIRV 270 (376)
T ss_pred EEEEEEEEEEeecCCCceEEEeeeccccc--CCceEeecccCcEEEEecccccCcccccCceee-----cccceeEEEEc
Confidence 3567899999998654 33222222111 1122222221111 1101 11123444442 23668889998
Q ss_pred ecCCccccccccCCCCCEEEEecccceee------ecCCCCceEEEEEc
Q 042788 126 YPKGRMAHHFREMHEGEYLPVKGPKGRLK------YKVGQARAFGMIAG 168 (258)
Q Consensus 126 ~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~------~~~~~~~~vvliag 168 (258)
.|.-|+||+.|+.||+|.+---.|.-. .+-. .+++++|-+
T Consensus 271 --Pg~kTkYLaEL~aGDeV~iVD~dGr~R~aiVGRvKIE-rRPl~lIeA 316 (376)
T COG1465 271 --PGGKTKYLAELKAGDEVLIVDFDGRTRSAIVGRVKIE-RRPLMLIEA 316 (376)
T ss_pred --CCCceEEhhhhcCCCeEEEEecCCceeEEEEEEEEee-cCceEEEEE
Confidence 788999999999999998875555421 1222 367777654
No 91
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=82.70 E-value=12 Score=26.14 Aligned_cols=77 Identities=14% Similarity=0.263 Sum_probs=50.1
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF 135 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L 135 (258)
.++|.+++.. ++-.+++++.|+.. ...+..|++|.+. |. ..|+.+..+ +.+++.+-. .-.....|
T Consensus 7 ~g~I~~i~~~-~~~~~~~i~~~~~~-~~~~~~g~SIavn-----Gv----cLTV~~~~~--~~f~~~l~~--eTl~~T~l 71 (85)
T PF00677_consen 7 TGKIISIEKN-GDSQRLRIEIPDKI-LSDLKIGGSIAVN-----GV----CLTVTDINE--DWFEVDLIP--ETLRRTTL 71 (85)
T ss_dssp EEEEEEEEEE-SSEEEEEEEESTGG-GGTG-TTSEEEET-----TE----EEEEEEEET--TEEEEEEEH--HHHHCSSG
T ss_pred EEEEEEEEEC-CCCEEEEEEcCHHH-HhhCccCcEEEEC-----Ce----eeEEEEecC--CEEEEechH--HHhhhchh
Confidence 4678888866 55778999988442 4678999987762 52 456777663 467776654 22223457
Q ss_pred ccCCCCCEEEEe
Q 042788 136 REMHEGEYLPVK 147 (258)
Q Consensus 136 ~~l~~Gd~v~v~ 147 (258)
..+++||+|.++
T Consensus 72 ~~~~~G~~VNlE 83 (85)
T PF00677_consen 72 GNLKVGDRVNLE 83 (85)
T ss_dssp GG--TTSEEEEE
T ss_pred ccCCCCCEEEEe
Confidence 789999999886
No 92
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=80.68 E-value=2.8 Score=37.48 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=22.6
Q ss_pred ceEEEEEcCcc--HHHHHHHHHHHHhC
Q 042788 161 RAFGMIAGGTG--ITPMFQLTRAILEN 185 (258)
Q Consensus 161 ~~vvliagGtG--Itp~~sil~~l~~~ 185 (258)
+++++.||||| |.|.+++++++.+.
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~ 28 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED 28 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC
Confidence 47899999998 99999999999864
No 93
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=79.45 E-value=7.3 Score=34.57 Aligned_cols=107 Identities=16% Similarity=0.234 Sum_probs=63.6
Q ss_pred CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCC------CCeeeeeccccccC--CCCCEEEEE
Q 042788 51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSE------GNEVIRPYTPITLD--SDIGYFELV 122 (258)
Q Consensus 51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~------g~~~~R~ySi~s~~--~~~~~l~~~ 122 (258)
.-...+++|++++.+.-+-+. .+..- .-+.+|+=+.+--. .. .+....||. ++.| -+.|.++-.
T Consensus 164 ~l~L~~a~Vt~V~~vG~GdRV-CVDtc-----sll~~gEGmLVGs~-s~glfLVhsEt~~~pYv-a~RPFRVNAGaVhaY 235 (344)
T PRK02290 164 KLELVPATVTRVEPVGMGDRV-CVDTC-----SLMEEGEGMLVGSS-SRGMFLVHAETEENPYV-ASRPFRVNAGAVHAY 235 (344)
T ss_pred cceeEEEEEEEEEEcCCccEE-EEEcc-----ccCCCCceEEEccc-CCcEEEEecccccCCCc-cCCCeeEecCcceeE
Confidence 345678999999998755432 23221 22455554443211 11 112223333 2222 123567777
Q ss_pred EEEecCCccccccccCCCCCEEEEecccceee------ecCCCCceEEEEEc
Q 042788 123 VKMYPKGRMAHHFREMHEGEYLPVKGPKGRLK------YKVGQARAFGMIAG 168 (258)
Q Consensus 123 Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~------~~~~~~~~vvliag 168 (258)
++. .|..|+||+.|+.||+|.+-...|.-. .+.. .+++++|-+
T Consensus 236 v~~--pgg~T~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKIE-~RPL~lIeA 284 (344)
T PRK02290 236 VRV--PGDKTRYLSELRSGDEVLVVDADGNTREAIVGRVKIE-KRPLLLIEA 284 (344)
T ss_pred EEc--CCCcchhhHhhcCCCEEEEEeCCCCEEEEEeeEEEEe-eccEEEEEE
Confidence 887 788999999999999999988888632 1222 378877765
No 94
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=77.44 E-value=32 Score=31.43 Aligned_cols=39 Identities=13% Similarity=0.097 Sum_probs=26.2
Q ss_pred EEEEEEEEEeC---CCEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 56 EFKLTKRTPIS---HNTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 56 ~~~v~~~~~~~---~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
+.+|..+...- ..++.+++..+.+ ...++||+|+.+.+.
T Consensus 279 ~g~v~~i~p~vd~~trt~~vrv~l~N~--~~~L~pGm~v~v~i~ 320 (409)
T PRK09783 279 TIRKWTLLPSVDAATRTLQLRLEVDNA--DEALKPGMNAWLQLN 320 (409)
T ss_pred EEEEEEEccccCCCCcEEEEEEEEeCC--CCccCCCCEEEEEEe
Confidence 56666554422 2466667766654 256899999999987
No 95
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=76.15 E-value=11 Score=33.70 Aligned_cols=107 Identities=18% Similarity=0.238 Sum_probs=61.9
Q ss_pred CCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEec-----CCCCeeeeeccccccC--CCCCEEEEEEE
Q 042788 52 ENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKD-----SEGNEVIRPYTPITLD--SDIGYFELVVK 124 (258)
Q Consensus 52 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~-----~~g~~~~R~ySi~s~~--~~~~~l~~~Vk 124 (258)
-...+++|++++.+.-+-+ +.+..- .-+.||+=+.+--.. ...+....||. ++.| -+.|.++-.+.
T Consensus 175 l~L~~a~Vt~V~~vGmGdR-VCVDtc-----sll~~gEGmLVGs~s~glfLVhsEt~~~pYv-a~RPFRVNAGaVHaYv~ 247 (354)
T PF01959_consen 175 LELVPATVTRVEPVGMGDR-VCVDTC-----SLLRPGEGMLVGSSSSGLFLVHSETHESPYV-ASRPFRVNAGAVHAYVL 247 (354)
T ss_pred ceeEEEEEEEEEEcCCccE-EEEEcc-----ccCCCCCeEEEcccCceEEEEEeccccCCCC-CCCCceEecCcceeEEE
Confidence 4677899999999865432 223221 224555544332110 01122233333 2222 12355677777
Q ss_pred EecCCccccccccCCCCCEEEEecccceee------ecCCCCceEEEEEc
Q 042788 125 MYPKGRMAHHFREMHEGEYLPVKGPKGRLK------YKVGQARAFGMIAG 168 (258)
Q Consensus 125 ~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~------~~~~~~~~vvliag 168 (258)
. .|.-|+||+.|+.||+|.+-...|.-. .+-. .+++++|=+
T Consensus 248 ~--pg~kT~YLSEL~sG~~VlvVd~~G~tR~~~VGRvKIE-~RPLllIeA 294 (354)
T PF01959_consen 248 M--PGGKTRYLSELRSGDEVLVVDADGRTRTAIVGRVKIE-RRPLLLIEA 294 (354)
T ss_pred c--CCCceeehhhhcCCCEEEEEeCCCCEEEEEeeEEEEe-ecceEEEEE
Confidence 6 788899999999999999998888632 1222 477777644
No 96
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=74.63 E-value=16 Score=27.04 Aligned_cols=58 Identities=10% Similarity=0.141 Sum_probs=38.7
Q ss_pred ceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCC
Q 042788 161 RAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQP 230 (258)
Q Consensus 161 ~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~ 230 (258)
+.++|+|.-|++..+.++++++... .+.+.+..+.+.+|... |.. .++ ++++.+....
T Consensus 2 ~~~ll~gDeTalPAi~~iLe~lp~~----~~~~v~iev~~~~d~~~---l~~----~~~-~~v~wv~r~~ 59 (119)
T PF04954_consen 2 DRYLLVGDETALPAIARILEALPAD----APGTVFIEVPDEADRQP---LPA----PAG-VEVTWVPRDG 59 (119)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHS-TT-----EEEEEEEESSGGG--------------TE-EEEEEEE-SS
T ss_pred ceEEEEeccccHHHHHHHHHhCCCC----CeEEEEEEECChHhccc---CCC----CCC-CEEEEEeCCC
Confidence 5789999999999999999998433 57888888888776432 222 233 8888776654
No 97
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=72.55 E-value=11 Score=31.26 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=29.4
Q ss_pred CCCcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 51 PENFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 51 ~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
......++|++++.+++ +++.++|+.++. ...|+||+++.|...
T Consensus 5 ~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~--~l~Y~pGD~l~V~P~ 53 (219)
T PF00667_consen 5 RKNPFPATVLENRRLTSPGSDRSTRHIELDLSDS--GLSYQPGDHLGVYPP 53 (219)
T ss_dssp TTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTS--TG---TT-EEEEE-S
T ss_pred CCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCC--CCcccCCCEEEEEcc
Confidence 34556899999999987 389999998765 489999999999644
No 98
>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]
Probab=69.84 E-value=21 Score=30.04 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=37.4
Q ss_pred EEEEc-CccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEE
Q 042788 164 GMIAG-GTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYY 225 (258)
Q Consensus 164 vliag-GtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~ 225 (258)
+||.| --||. +++++++.+.. ..-+++..+|+++.. .+|++.+...+++ +++.-
T Consensus 6 v~ItGaNRGIG--lgLVk~llk~~---~i~~iiat~r~~e~a--~~~l~~k~~~d~r-vHii~ 60 (249)
T KOG1611|consen 6 VFITGANRGIG--LGLVKELLKDK---GIEVIIATARDPEKA--ATELALKSKSDSR-VHIIQ 60 (249)
T ss_pred EEEeccCcchh--HHHHHHHhcCC---CcEEEEEecCChHHh--hHHHHHhhccCCc-eEEEE
Confidence 45555 44666 67899988764 455778888888766 6778777766666 77653
No 99
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=65.51 E-value=6.2 Score=32.70 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=15.8
Q ss_pred eeeeeccccccCC-CCCEEEEEEEEe
Q 042788 102 EVIRPYTPITLDS-DIGYFELVVKMY 126 (258)
Q Consensus 102 ~~~R~ySi~s~~~-~~~~l~~~Vk~~ 126 (258)
..+|.|||+|++. .++.++|+|...
T Consensus 177 l~PR~YSIsSS~~~~p~~v~ltv~vv 202 (219)
T PF00667_consen 177 LQPRYYSISSSPLVHPNKVHLTVSVV 202 (219)
T ss_dssp ---EEEEB-S-TTTSTTEEEEEEEE-
T ss_pred CCCcceeecccccCCCCEEEEEEEEE
Confidence 4689999999983 467889888874
No 100
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=63.54 E-value=88 Score=26.17 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=26.9
Q ss_pred EEEEEEEEEEeC---CCEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 55 KEFKLTKRTPIS---HNTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 55 ~~~~v~~~~~~~---~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
.+++|.++.... ...+.+++..+.+ ...+.||+++.+.+.
T Consensus 155 ~~g~v~~I~~~~~~~~~~~~v~~~~~~~--~~~l~~G~~v~v~i~ 197 (265)
T TIGR00999 155 LPARVDYVGPEVDGSSRTAKVRVLIKNE--NLTLKPGLFVQVRVE 197 (265)
T ss_pred EEEEEEEEccccCCCCceEEEEEEEeCC--CCccCCCCEEEEEEe
Confidence 467777776543 2355666666554 245899999999987
No 101
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=62.43 E-value=52 Score=23.71 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhCCCCCC--eEEEEEEeCCCcccc--cHHHHHHHHhhCCCCeEEEEEEcCCC
Q 042788 172 ITPMFQLTRAILENPKDKT--NVHLIYANVTVGDIL--LKDELDSFATNSPNRFKVYYVLSQPT 231 (258)
Q Consensus 172 Itp~~sil~~l~~~~~~~~--~v~l~~~~r~~~d~~--~~~eL~~l~~~~~~~~~v~~~~s~~~ 231 (258)
-.|++..+++.++.+.... .+.|.|-+.+..-.+ ..+.|++++++... ++|..+.+.++
T Consensus 27 y~Pi~~wl~~Yl~~~~~~i~~~~~L~YfNTSSsk~l~~i~~~Le~~~~~g~~-V~v~Wyyd~dD 89 (99)
T PF09345_consen 27 YQPILDWLEAYLAEPNKPITFNFKLSYFNTSSSKALMDIFDLLEDAAQKGGK-VTVNWYYDEDD 89 (99)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEEEEEEecHhHHHHHHHHHHHHHHHhcCCc-EEEEEEECCCC
Confidence 4688888888887743222 356888887766544 47778888666555 99998887544
No 102
>PF08877 MepB: MepB protein; InterPro: IPR011235 This is a family of uncharacterised bacterial proteins.
Probab=60.78 E-value=60 Score=24.44 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=33.5
Q ss_pred eCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEE
Q 042788 65 ISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKM 125 (258)
Q Consensus 65 ~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~ 125 (258)
+.+..+++|+....+ =++||||.++-.+..| ..+||+..+.. +.+.+.|..
T Consensus 14 l~~~~~~~R~AK~TP-----~K~G~FVt~Wkr~~~g--~~~Pf~~~d~~---d~liI~v~d 64 (123)
T PF08877_consen 14 LNGKTIRFRLAKKTP-----KKPGQFVTFWKRDENG--KNQPFDEEDSF---DFLIINVID 64 (123)
T ss_pred ECCcEEEEEecccCC-----CcccEEEEEEEECCCC--CccCCccccCC---CEEEEEEEe
Confidence 455567777776554 3899999998764444 45888855543 456666664
No 103
>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]
Probab=59.03 E-value=1.2e+02 Score=28.88 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=28.1
Q ss_pred CCcEEEEEEecCCCCeeeeeccccccCC----CCCEEEEEEEEecCCccccccccCCCCCEEEEe
Q 042788 87 VGQHILCRGKDSEGNEVIRPYTPITLDS----DIGYFELVVKMYPKGRMAHHFREMHEGEYLPVK 147 (258)
Q Consensus 87 pGQ~v~l~~~~~~g~~~~R~ySi~s~~~----~~~~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~ 147 (258)
.|-||.+. | .........|+....|+ +.+-+.|+.+..+.|. +.+|+.|..+
T Consensus 128 SG~YI~lq-P-G~~~~~~d~F~ald~pP~~~~~~~gL~i~L~a~dlGs-------L~~GspVyfr 183 (553)
T COG3008 128 SGNYIGLQ-P-GKKGEAEDHFTALDTPPIASLDAGGLRIHLDAKDLGS-------LNVGSPVYFR 183 (553)
T ss_pred cCceEEec-C-CCCCCccceeeeccCCCCCCCCCCCeEEEEecCccCC-------cCCCCeeEEe
Confidence 57788774 3 21234456776655442 3345677666544444 4555555544
No 104
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=56.89 E-value=23 Score=26.32 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=24.0
Q ss_pred EEEEEcCcc--HHHHHHHHHHHHhCCCCCCeEEE
Q 042788 163 FGMIAGGTG--ITPMFQLTRAILENPKDKTNVHL 194 (258)
Q Consensus 163 vvliagGtG--Itp~~sil~~l~~~~~~~~~v~l 194 (258)
++++++||+ +-|++++.+++.+++ .+|.+
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rG---h~V~~ 31 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRG---HEVRL 31 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccC---CeEEE
Confidence 578889996 999999999999987 56663
No 105
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=54.98 E-value=1.3e+02 Score=27.48 Aligned_cols=40 Identities=18% Similarity=0.039 Sum_probs=26.3
Q ss_pred EEEEEEEEEEe---CCCEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 55 KEFKLTKRTPI---SHNTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 55 ~~~~v~~~~~~---~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
...+|..+... +...+.+++..+... ..+.||+|+.+++.
T Consensus 272 ~~G~v~~I~~~id~~t~t~~v~a~~~n~~--~~L~pG~~v~v~i~ 314 (415)
T PRK11556 272 SEGTLLSLDNQIDATTGTIKLKARFNNQD--DALFPNQFVNARML 314 (415)
T ss_pred eeeEEEEeeccccCCCCEEEEEEEeCCCC--CccCCCCEEEEEEE
Confidence 35677766643 234556666665542 46899999999876
No 106
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=53.10 E-value=43 Score=27.91 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=17.9
Q ss_pred CceEEEEEcCccHHHHHHHHHHHHhCC
Q 042788 160 ARAFGMIAGGTGITPMFQLTRAILENP 186 (258)
Q Consensus 160 ~~~vvliagGtGItp~~sil~~l~~~~ 186 (258)
..++++-+||+||. +.+++.+.+.+
T Consensus 5 gnTiLITGG~sGIG--l~lak~f~elg 29 (245)
T COG3967 5 GNTILITGGASGIG--LALAKRFLELG 29 (245)
T ss_pred CcEEEEeCCcchhh--HHHHHHHHHhC
Confidence 35677777788988 66777777654
No 107
>PRK00036 primosomal replication protein N; Reviewed
Probab=52.79 E-value=31 Score=25.34 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=26.6
Q ss_pred CEEEEEEEEecCCccccccccCCCCCEEEEecccce
Q 042788 117 GYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGR 152 (258)
Q Consensus 117 ~~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~ 152 (258)
..+++.|...--|..+..+.++.+|+.+.+.|-...
T Consensus 43 Rqv~~~i~ava~G~~a~~~~~l~~Gs~v~v~GFLa~ 78 (107)
T PRK00036 43 RRVELTISAVALGDLALLLADTPLGTEMQVQGFLAP 78 (107)
T ss_pred ceEEEEEEEEEEhhHHHHhcccCCCCEEEEEEEEEE
Confidence 345555555547888888888999999999985543
No 108
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=51.18 E-value=40 Score=22.80 Aligned_cols=63 Identities=21% Similarity=0.371 Sum_probs=38.2
Q ss_pred CCCCCcEEEEEEecCCCCeeeeeccccccCC---CCCEEEEEEEEecCCccccccccCCCCCEEEEecccceeee
Q 042788 84 GLPVGQHILCRGKDSEGNEVIRPYTPITLDS---DIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKY 155 (258)
Q Consensus 84 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~---~~~~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~ 155 (258)
...+|..|.++.. ..+ ..+.|++....+ +.+ .|-. ..+....|-..++||.+.+..|.|...+
T Consensus 5 ~V~~Gs~V~l~~~-~~~--~~~~~~lv~~~~~~~~~~----~IS~--~SPLG~ALlG~~~Gd~v~~~~~~g~~~~ 70 (77)
T PF01272_consen 5 VVTIGSTVTLKDL-DDG--EEETYTLVGPDEADPDNG----KISI--DSPLGKALLGKKVGDEVEVELPGGERKY 70 (77)
T ss_dssp B-STTEEEEEEET-TTT--EEEEEEEE-GGG-BSTST----EEET--TSHHHHHHTT-BTT-EEEEEETTBEEEE
T ss_pred EEEeCCEEEEEEC-CCC--CEEEEEEEeEhHhCCcee----EEEe--cCHHHHHhcCCCCCCEEEEEeCCceEEE
Confidence 4678999998764 223 456777765432 223 2222 4555566778899999999999997543
No 109
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=49.77 E-value=1.2e+02 Score=24.69 Aligned_cols=79 Identities=15% Similarity=0.168 Sum_probs=50.5
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF 135 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L 135 (258)
.++|.+++... +..+++++.|.. ..+..+|+.|.+. |- ..|+.... ++.+.+.+-.+ .=..| -|
T Consensus 9 ~g~V~~i~~~~-~~~~~~i~~~~~--~~~l~~g~SIAvn-----Gv----cLTV~~~~--~~~f~~~l~~e-Tl~~T-~l 72 (194)
T PRK09289 9 VGTVESIEPKG-DGLRLTIEAGKL--LSDLKLGDSIAVN-----GV----CLTVTEID--GDSFTVDVSPE-TLRRT-NL 72 (194)
T ss_pred EEEEEEEEEcC-CcEEEEEEcCcc--ccccccCCEEEEc-----cE----EEEEEEEc--CCEEEEEEEHH-HhhhC-ch
Confidence 46777777654 456788888754 3458899987763 42 45666664 35677766532 11222 24
Q ss_pred ccCCCCCEEEEeccc
Q 042788 136 REMHEGEYLPVKGPK 150 (258)
Q Consensus 136 ~~l~~Gd~v~v~gP~ 150 (258)
..+++||.|.++.+.
T Consensus 73 ~~l~~G~~VNLEra~ 87 (194)
T PRK09289 73 GDLKVGDRVNLERAL 87 (194)
T ss_pred hhccCCCEEEEeEcc
Confidence 678899999888654
No 110
>PHA02099 hypothetical protein
Probab=46.86 E-value=33 Score=22.88 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=35.5
Q ss_pred EEEEEEEEecCCccccccccCCCCCEEEEecccce-ee-ecCCCCceEEEEEcCcc
Q 042788 118 YFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGR-LK-YKVGQARAFGMIAGGTG 171 (258)
Q Consensus 118 ~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~-f~-~~~~~~~~vvliagGtG 171 (258)
++.++|+....|+..+|+.+++.-++| ||.|. .. +.....-+++|=|.|--
T Consensus 2 efkiiv~s~~~gpid~yi~~lkn~~rv---~pg~~emhilr~~~g~diifha~gy~ 54 (84)
T PHA02099 2 EFKIIVKSSAKGPVDQYIANLKNAGRV---GPGESEMHILRNFEGVDIVFHAEGYN 54 (84)
T ss_pred ceEEEEecccCCCHHHHHHhhhccCcc---CCCCcEEEEEeecCCccEEEEcCCCC
Confidence 367788887889999999888876665 56665 22 33344567778777653
No 111
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=46.03 E-value=1.3e+02 Score=27.27 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=24.8
Q ss_pred EEEEEEEEEe---CCCEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 56 EFKLTKRTPI---SHNTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 56 ~~~v~~~~~~---~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
+.+|..+... ....+.+++..+.+. ..+.||+++.+.+.
T Consensus 257 ~g~v~~i~~~~d~~trt~~V~~~~~n~~--~~L~pGm~~~v~i~ 298 (397)
T PRK15030 257 DGTLEFSDVTVDQTTGSITLRAIFPNPD--HTLLPGMFVRARLE 298 (397)
T ss_pred ceEEEEeeccccCCCCeEEEEEEEeCCC--CcccCCCEEEEEEe
Confidence 4556554432 234556666665542 46899999999987
No 112
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=44.74 E-value=43 Score=26.11 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=42.3
Q ss_pred CCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccccCCCCCEEEEecccceeee
Q 042788 84 GLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKY 155 (258)
Q Consensus 84 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~ 155 (258)
...-|+.|.+... ..| ....|+|+...+.+. -.=.|.. ..++.+-|-..++||.+.+.+|.|...+
T Consensus 78 ~V~~Gs~V~~~~~-~~g--e~~~~~iVg~~ead~-~~~~IS~--~SPig~aLlGk~vGd~v~v~~p~g~~~~ 143 (151)
T COG0782 78 VVTFGSTVTLENL-DDG--EEVTYTIVGPDEADP-AKGKISV--DSPLGRALLGKKVGDTVEVNTPGGEKEV 143 (151)
T ss_pred EEecCCEEEEEEC-CCC--CEEEEEEEccccccc-ccCceec--cCHHHHHHhCCCCCCEEEEecCCceEEE
Confidence 4677898888755 224 457899988654321 0001121 3455566778899999999999665444
No 113
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=43.77 E-value=36 Score=26.57 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=41.0
Q ss_pred CCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccccCCCCCEEEEecccceeee
Q 042788 84 GLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKY 155 (258)
Q Consensus 84 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~ 155 (258)
....|..|.+... ..| ....|+++..... +.-...|-. ..+..+.|-..++||.+.+..|.|...+
T Consensus 85 ~V~~Gs~V~l~~~-~~~--~~~~~~lvg~~e~-d~~~~~IS~--~SPlG~aLlGk~~Gd~v~~~~p~g~~~~ 150 (157)
T PRK00226 85 KVKFGSTVTLKDL-DTD--EEETYQIVGSDEA-DPKQGKISI--ESPIARALIGKKVGDTVEVTTPGGEYEY 150 (157)
T ss_pred EEecCCEEEEEEC-CCC--CEEEEEEEChhhc-CccCCeecc--CChHHHHHhCCCCCCEEEEEcCCCcEEE
Confidence 4577888888754 223 3467777753322 211112222 4555566778899999999999996443
No 114
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=43.43 E-value=48 Score=29.78 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=22.6
Q ss_pred eEEEEEcCcc--HHHHHHHHHHHHhCC
Q 042788 162 AFGMIAGGTG--ITPMFQLTRAILENP 186 (258)
Q Consensus 162 ~vvliagGtG--Itp~~sil~~l~~~~ 186 (258)
.+++.||||| +.|.+++++++.+++
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g 28 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRG 28 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhC
Confidence 5788999998 999999999999885
No 115
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=43.22 E-value=1.9e+02 Score=25.43 Aligned_cols=58 Identities=10% Similarity=0.194 Sum_probs=40.9
Q ss_pred eEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCe
Q 042788 162 AFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRF 221 (258)
Q Consensus 162 ~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~ 221 (258)
++.+|++|..+-++..++.++.... ...++++..+.+.-.-.+.+.|++|...+..++
T Consensus 2 ~~~vv~~g~~~~~~~~~lkSil~~n--~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i 59 (304)
T cd06430 2 HLAVVACGERLEETLTMLKSAIVFS--QKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKF 59 (304)
T ss_pred EEEEEEcCCcHHHHHHHHHHHHHhC--CCCEEEEEEECCccCHHHHHHHHHHHHhcccee
Confidence 5788999999999999999987764 256666666655344455666888866554445
No 116
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=42.48 E-value=1.3e+02 Score=24.71 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=50.3
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF 135 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L 135 (258)
.++|.+++.. ++...++++.|+.. .....++.+|.+. | =+.|+..... +.+++.+-. .-.-..-|
T Consensus 106 ~~~i~~i~~~-~~~~~~~i~~~~~~-~~~i~~kgSIaid-----G----vsLTV~~v~~--~~f~v~lIp--~Tl~~T~l 170 (206)
T PRK13020 106 TATVVEISDT-EENYDIRFRVPPEW-MKYIFAKGFIGVN-----G----CSLTVGEVDE--SEFEVHLIP--ETLRATNL 170 (206)
T ss_pred EEEEEEEEEc-CCCEEEEEEEChHH-hcccccCCEEEEe-----e----EEEEEEeEcC--CEEEEEEeH--HHHhhccc
Confidence 4778888865 45667888887552 2345788877764 3 2457777653 456665543 22222346
Q ss_pred ccCCCCCEEEEec
Q 042788 136 REMHEGEYLPVKG 148 (258)
Q Consensus 136 ~~l~~Gd~v~v~g 148 (258)
..+++||.|.++-
T Consensus 171 ~~~k~G~~VNiE~ 183 (206)
T PRK13020 171 GAKKVGDLVNIEI 183 (206)
T ss_pred ccCCCCCEEEEeE
Confidence 7899999998873
No 117
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=42.08 E-value=96 Score=29.99 Aligned_cols=42 Identities=17% Similarity=0.073 Sum_probs=33.8
Q ss_pred CcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 53 NFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 53 ~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
....++|++++.+++ ++++++|++++. ...|+||+++.|...
T Consensus 233 ~p~~a~v~~n~~lt~~~~~k~~~hiel~l~~~--~~~Y~~GD~l~V~P~ 279 (597)
T TIGR01931 233 NPFRAEVLENQKITGRNSKKDVRHIEIDLEGS--GLHYEPGDALGVWYK 279 (597)
T ss_pred CCeEEEEEeeEecCCCCCCceEEEEEEecCCC--CCccCCCCEEEEEeC
Confidence 345789999998874 599999998764 478999999999644
No 118
>PF10694 DUF2500: Protein of unknown function (DUF2500); InterPro: IPR019635 This entry represents a group of proteins that is largely confined to the Gammaproteobacteria. The function is not known. ; PDB: 3RD4_D 2L0C_A 3Q6C_N.
Probab=41.10 E-value=29 Score=25.39 Aligned_cols=22 Identities=5% Similarity=-0.008 Sum_probs=9.8
Q ss_pred CCCCCCCCCCcEEEEEEEEEEe
Q 042788 44 KSRGSLDPENFKEFKLTKRTPI 65 (258)
Q Consensus 44 ~~~~~~~~~~~~~~~v~~~~~~ 65 (258)
..+..-.|..-..++|++++..
T Consensus 26 ~~~n~~aP~~sv~a~Vv~Kr~~ 47 (110)
T PF10694_consen 26 WAKNNNAPVRSVPATVVDKRTE 47 (110)
T ss_dssp --------EEEEEEEEEEEEEE
T ss_pred HHhcCCCCcEEEEEEEEEeEeE
Confidence 3344444555667888887764
No 119
>PRK00228 hypothetical protein; Validated
Probab=40.81 E-value=1.6e+02 Score=23.84 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=46.7
Q ss_pred CEEEEecccce---eeecCC--CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHH
Q 042788 142 EYLPVKGPKGR---LKYKVG--QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD 211 (258)
Q Consensus 142 d~v~v~gP~G~---f~~~~~--~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~ 211 (258)
..|.+.||... |.+... ....-+=|..|+.++--..+++.+.... ...++.++.+.-..+.--+.+|++
T Consensus 74 ~~v~~GGPV~~~~~~~Lh~~~~~~~~s~~v~~gl~l~~s~d~l~~l~~~~-~~~~~~~flGyaGW~~gQLe~Ei~ 147 (191)
T PRK00228 74 QPVFLGGPVQTDRGFVLHSPRDGFDSSIRVSDGLVLTTSRDVLEALATGP-GPEGVLVALGYAGWGAGQLEQEIE 147 (191)
T ss_pred CeEEeCCCccCCcEEEEEECCCcCCCceeecCCeEEeCCHHHHHHHhcCC-CCCcEEEEEEECCCCHHHHHHHHH
Confidence 56899999964 444322 1234466788888888788888887653 346788888887766655666665
No 120
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=40.21 E-value=1.9e+02 Score=23.56 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=49.2
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF 135 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L 135 (258)
.++|.+++... +...++++.|... .....+|++|.+. |- +.|+....+ +.+++.+-. .-.-..-|
T Consensus 105 ~g~I~~i~~~~-~~~~~~i~~~~~~-~~~l~~kgSIavd-----Gv----sLTV~~~~~--~~f~v~lip--eTl~~T~l 169 (194)
T PRK09289 105 TGEIVSIEKEG-NSVEFRFKAPAEL-AKYIVEKGSIAVD-----GV----SLTVNEVDG--DRFSVNLIP--HTLENTTL 169 (194)
T ss_pred EEEEEEEEECC-CcEEEEEECChHH-hcccccCCEEEEc-----cE----EEEEEEEcC--CEEEEEEeH--HHHhhCcc
Confidence 46788887654 4567899887541 2356889988773 42 457777643 456665543 21112235
Q ss_pred ccCCCCCEEEEe
Q 042788 136 REMHEGEYLPVK 147 (258)
Q Consensus 136 ~~l~~Gd~v~v~ 147 (258)
..+++||.|.++
T Consensus 170 ~~~k~G~~VNlE 181 (194)
T PRK09289 170 GEKKVGDRVNLE 181 (194)
T ss_pred ccCCCCCEEEEe
Confidence 678999999886
No 121
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=39.77 E-value=1.4e+02 Score=24.54 Aligned_cols=80 Identities=11% Similarity=0.184 Sum_probs=50.3
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF 135 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L 135 (258)
.++|.+++... +..+++++.|... .....+|+.|.+. |- +.|+..... +.+.+.+-. .-.-..-|
T Consensus 9 vg~I~~i~~~~-~~~~l~i~~~~~~-~~~l~~g~SIavn-----GV----cLTV~~v~~--~~f~~~lip--eTl~~T~l 73 (206)
T PRK13020 9 TAEVVAIHKKD-GLNTLEIAFPPEL-LEGLEIGASVAVN-----GV----CLTVTKIEG--DRVFFDVME--ETLRLTNL 73 (206)
T ss_pred EEEEEEEEECC-CcEEEEEEeChhH-hccCCCCCEEEEC-----CE----EEEEEEECC--CEEEEEEhH--HHHhhCch
Confidence 56788877744 4567888877542 2467899988763 42 456777643 456665542 11112235
Q ss_pred ccCCCCCEEEEeccc
Q 042788 136 REMHEGEYLPVKGPK 150 (258)
Q Consensus 136 ~~l~~Gd~v~v~gP~ 150 (258)
..+++||.|.++.+.
T Consensus 74 ~~~~~G~~VNlEral 88 (206)
T PRK13020 74 ADLRVGDRVNIERSA 88 (206)
T ss_pred hhccCCCEEeeEecc
Confidence 678899999888654
No 122
>PLN02741 riboflavin synthase
Probab=39.71 E-value=1.8e+02 Score=23.77 Aligned_cols=80 Identities=11% Similarity=0.150 Sum_probs=49.1
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF 135 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L 135 (258)
.++|.+++...++..+++++.+.. .....+|+.|.+. |- ..|+..... +.+.+.+-. .-.-..-|
T Consensus 9 ~G~I~~i~~~~~~~~~l~i~~~~~--~~~l~~G~SIAvn-----Gv----CLTV~~~~~--~~f~vdvip--ETl~~T~L 73 (194)
T PLN02741 9 MGEVKSLGVTDDGGFDLKIEASTV--LDGVKLGDSIAVN-----GT----CLTVTEFDG--DEFTVGLAP--ETLRKTSL 73 (194)
T ss_pred EEEEEEEEecCCCcEEEEEEcchh--hcccccCCEEEEC-----cE----EEEEEEECC--CEEEEEEEH--HHhhhCcc
Confidence 467777776345667788883322 3467899987763 42 456766643 456666553 21111235
Q ss_pred ccCCCCCEEEEeccc
Q 042788 136 REMHEGEYLPVKGPK 150 (258)
Q Consensus 136 ~~l~~Gd~v~v~gP~ 150 (258)
..+++||.|.++.+.
T Consensus 74 ~~l~~G~~VNLEral 88 (194)
T PLN02741 74 GELKTGSLVNLERAL 88 (194)
T ss_pred ccCCCCCEEeeccCC
Confidence 678899999887554
No 123
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=39.13 E-value=87 Score=24.56 Aligned_cols=62 Identities=18% Similarity=0.361 Sum_probs=40.4
Q ss_pred CCCCCcEEEEEEecCCCCeeeeeccccccC---CCCCEEEEEEEEecCCccccccccCCCCCEEEEecccceeee
Q 042788 84 GLPVGQHILCRGKDSEGNEVIRPYTPITLD---SDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKY 155 (258)
Q Consensus 84 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~---~~~~~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~ 155 (258)
....|..|.+.. .+| ....|++.... ...+.+.+ ..+..+.|-..++||+|.+..|.|...+
T Consensus 85 ~V~~Gs~V~l~d--~~~--~~~~~~iVgp~e~d~~~~~IS~------~SPlG~ALlGk~vGd~v~v~~p~g~~~~ 149 (157)
T PRK01885 85 KVFFGAWVEIEN--EDG--EEKRFRIVGPDEIDGRKGYISI------DSPMARALLKKEVGDEVTVNTPAGEAEW 149 (157)
T ss_pred EEEeCCEEEEEE--CCC--CEEEEEEEChHHhCcCCCeEec------cCHHHHHHhCCCCCCEEEEEcCCCcEEE
Confidence 356788888864 334 34567776543 23343333 3556666778899999999999997544
No 124
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=39.06 E-value=2.5e+02 Score=24.04 Aligned_cols=41 Identities=20% Similarity=-0.004 Sum_probs=29.0
Q ss_pred cEEEEEEEEEEeCC---CEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 54 FKEFKLTKRTPISH---NTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 54 ~~~~~v~~~~~~~~---~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
-.+++|..+....+ ..+.+++..+.. ...+.+|+++.+.+.
T Consensus 202 ~~~g~I~~I~~~~~~~~~~~~v~~~~~~~--~~~l~~G~~v~v~i~ 245 (322)
T TIGR01730 202 EFKGKLRFIDPRVDSGTGTVRVRATFPNP--DGRLLPGMFGRVTIS 245 (322)
T ss_pred eEeEEEEEEeccccCCCCeEEEEEEEcCC--CCcCCCCCEEEEEEe
Confidence 34677777765443 466777776654 367899999999876
No 125
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=37.95 E-value=1.1e+02 Score=27.96 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=32.0
Q ss_pred EEEEEEEEEEeCC----CEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 55 KEFKLTKRTPISH----NTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 55 ~~~~v~~~~~~~~----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
..++|++.+.+++ +++.++|+.++. ...|+||+++.|...
T Consensus 6 ~~~~v~~~~~lt~~~~~~~~~~~ld~~~~--~~~Y~~GD~l~I~p~ 49 (416)
T cd06204 6 FLAPVAVSRELFTGSDRSCLHIEFDISGS--GIRYQTGDHLAVWPT 49 (416)
T ss_pred eEeEEEEEeeccCCCCccEEEEEEeCCCC--CCcccCCCEEEEEcC
Confidence 3678888888874 689999998764 378999999999644
No 126
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=37.81 E-value=49 Score=31.06 Aligned_cols=45 Identities=20% Similarity=0.329 Sum_probs=36.2
Q ss_pred CCCCCCcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEE
Q 042788 48 SLDPENFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCR 94 (258)
Q Consensus 48 ~~~~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~ 94 (258)
.+.+....++++++++.+|+ |++.+.|+.++. ...|.||+-+.|.
T Consensus 190 v~~~~~~~~~k~~~N~rlT~~~HfQDVR~~~F~i~~s--~~~~epGDvl~l~ 239 (574)
T KOG1159|consen 190 VLEPQGQIPAKLVENRRLTSADHFQDVRLFEFDIPDS--YEEFEPGDVLSLL 239 (574)
T ss_pred hhccccccccchhcceeecCcchhheeeEEEEecCCc--cccccCCCEEEEe
Confidence 34455556688888888875 699999999985 4899999999996
No 127
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=37.42 E-value=63 Score=29.18 Aligned_cols=35 Identities=9% Similarity=0.285 Sum_probs=26.2
Q ss_pred EEEEEEeC-----CCEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 59 LTKRTPIS-----HNTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 59 v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
|++.+.++ .+++.++|+.++. ..|+||+++.|...
T Consensus 2 v~~~~~lt~~~~~~~~~~~~~~~~~~---~~y~~GD~l~v~P~ 41 (384)
T cd06206 2 VVENRELTAPGVGPSKRHLELRLPDG---MTYRAGDYLAVLPR 41 (384)
T ss_pred eeeEEEcCCCCCCccEEEEEEECCCC---CccCCCCEEEEECC
Confidence 45555554 5689999998653 78999999999644
No 128
>PLN02343 allene oxide cyclase
Probab=37.33 E-value=59 Score=26.53 Aligned_cols=49 Identities=20% Similarity=0.378 Sum_probs=27.6
Q ss_pred EEEEEEEecCCccccc--cccCCCCC--EEEEecccceeeecCCCCceEEEEEcCccHH
Q 042788 119 FELVVKMYPKGRMAHH--FREMHEGE--YLPVKGPKGRLKYKVGQARAFGMIAGGTGIT 173 (258)
Q Consensus 119 l~~~Vk~~~~G~~S~~--L~~l~~Gd--~v~v~gP~G~f~~~~~~~~~vvliagGtGIt 173 (258)
+.++|+.++.-..-+| +-+.--|| .|.+.|||=.| .+..+-|.||+||=
T Consensus 112 ~Cvliq~~pek~gDryEa~ySfyfGDyGHisvqGpylty------eDt~LaiTGGsGiF 164 (229)
T PLN02343 112 LCVLIQHVPEKKGDRYEAIYSFYFGDYGHISVQGPYLTY------EDTYLAITGGSGIF 164 (229)
T ss_pred eEEEEEeccccCCceeEEEEEEEecCcceeEEecccccc------ccceEEeecCccee
Confidence 6667776544222222 12333444 35566666544 24678999999983
No 129
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=37.17 E-value=1.9e+02 Score=26.02 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=26.1
Q ss_pred EEEEEEEEEeC---CCEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 56 EFKLTKRTPIS---HNTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 56 ~~~v~~~~~~~---~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
+++|..+.... ...+.+++..+.+. ..+.||+++.+.++
T Consensus 253 ~g~v~~i~~~~d~~t~t~~v~~~~~n~~--~~l~pGm~v~v~i~ 294 (385)
T PRK09859 253 TGTLKFSDPTVDETTGSVTLRAIFPNPN--GDLLPGMYVTALVD 294 (385)
T ss_pred ceEEEEecCccCCCCCeEEEEEEEECCC--CeECCCCEEEEEEe
Confidence 46666665433 34566666665542 46899999999987
No 130
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=36.18 E-value=94 Score=23.83 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=32.5
Q ss_pred eeccccccCCCCCEEEEEEEEecCCc--cccccccCCCCCEEEEecccce-eeec
Q 042788 105 RPYTPITLDSDIGYFELVVKMYPKGR--MAHHFREMHEGEYLPVKGPKGR-LKYK 156 (258)
Q Consensus 105 R~ySi~s~~~~~~~l~~~Vk~~~~G~--~S~~L~~l~~Gd~v~v~gP~G~-f~~~ 156 (258)
..|.-...|.+.+...|.=.+...|. .=..|.++++||+|.+..+.|. +.|.
T Consensus 38 g~~~~~~~pG~~Gn~viaGH~~~~g~~~~F~~L~~l~~GD~I~v~~~~g~~~~Y~ 92 (144)
T cd05829 38 GWYAGGPKPGEKGTAVLAGHVDSRGGPAVFFRLGDLRKGDKVEVTRADGQTATFR 92 (144)
T ss_pred eEeCCCCCCCCCCCEEEEEecCCCCCChhhcchhcCCCCCEEEEEECCCCEEEEE
Confidence 34444444555566666555432321 1244789999999999998886 5554
No 131
>cd05830 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5 represented by Streptomyces avermitilis SAV4337. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=36.10 E-value=84 Score=23.80 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=19.6
Q ss_pred cccccCCCCCEEEEecccceeeec
Q 042788 133 HHFREMHEGEYLPVKGPKGRLKYK 156 (258)
Q Consensus 133 ~~L~~l~~Gd~v~v~gP~G~f~~~ 156 (258)
..|.++++||+|.+.-+.+.+.+.
T Consensus 61 ~~L~~l~~Gd~i~v~~~~~~~~Y~ 84 (137)
T cd05830 61 NDLDKLRPGDKIVVETADGWYTYV 84 (137)
T ss_pred ccHhhCCCCCEEEEEECCeEEEEE
Confidence 346799999999999988876654
No 132
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=35.12 E-value=2.3e+02 Score=25.49 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=19.7
Q ss_pred CEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 68 NTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 68 ~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
.++.+++..+.+ ...+.||+++.+.+.
T Consensus 271 ~t~~V~~~~~n~--~~~L~pGm~~~v~i~ 297 (385)
T PRK09578 271 DTVAMRALFPNP--ERELLPGAYVRIALD 297 (385)
T ss_pred CeEEEEEEEeCC--CCcCCCCCEEEEEEE
Confidence 355666666554 256899999999987
No 133
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=34.21 E-value=49 Score=26.12 Aligned_cols=32 Identities=13% Similarity=0.051 Sum_probs=20.0
Q ss_pred cCCCCCCcEEEEEEecCCCCeeeeeccccccC
Q 042788 82 ILGLPVGQHILCRGKDSEGNEVIRPYTPITLD 113 (258)
Q Consensus 82 ~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~ 113 (258)
.+...+|+-+.|.+|+.-....|+-+.+...|
T Consensus 70 ~l~V~~~~~vqlsVP~~Ia~~pW~ll~iY~dp 101 (161)
T PF10969_consen 70 ELPVPPGEPVQLSVPEEIADAPWRLLAIYDDP 101 (161)
T ss_pred EEEcCCCCeEEEeCCHHHccCCcEEEEEEECC
Confidence 36678999999998843333344555554444
No 134
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=33.38 E-value=1.3e+02 Score=29.09 Aligned_cols=42 Identities=14% Similarity=0.050 Sum_probs=33.5
Q ss_pred CcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 53 NFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 53 ~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
....++|+.++.+++ ++++++|++.+. ...|+||+++-|...
T Consensus 236 ~p~~a~v~~n~~Lt~~~~~k~~rhie~dl~~~--~l~Y~~GD~lgV~P~ 282 (600)
T PRK10953 236 APLTASLSVNQKITGRNSEKDVRHIEIDLGDS--GLRYQPGDALGVWYQ 282 (600)
T ss_pred CCeEEEEEEEeecCCCCCCceEEEEEEecCCC--CCcccCCCEEEEEcC
Confidence 345789999999974 489999998654 378999999999644
No 135
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=32.56 E-value=79 Score=27.52 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=23.4
Q ss_pred eEEEEEcCcc---HHHHHHHHHHHHhCCCCCCeEEEE
Q 042788 162 AFGMIAGGTG---ITPMFQLTRAILENPKDKTNVHLI 195 (258)
Q Consensus 162 ~vvliagGtG---Itp~~sil~~l~~~~~~~~~v~l~ 195 (258)
++++.++|+| ++|.+++++++.+ + ..+.++
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g---~ev~~~ 33 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-D---YEVSYI 33 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-C---CeEEEE
Confidence 4678899999 9999999999886 4 445544
No 136
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=32.28 E-value=2.2e+02 Score=21.46 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEE
Q 042788 19 AAFFGLLVAVAAMIITIAVYLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILC 93 (258)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l 93 (258)
..++...++++++.++.+|...|-...... ..-...+|++...+.+.=+.+.++..+..-..+..|+|--.+
T Consensus 19 ~qv~~~L~lVl~lI~~~aWLlkR~~~~~~~---~~~~~lkVva~~slG~RErvvvVeV~~~~LlLGVT~~~I~~L 90 (124)
T PRK11486 19 LQVSGALIGIIALILAAAWLVKRLGFAPKR---TGVRGLKISASASLGARERVVIVDVEDARLVLGVTAGQINLL 90 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCC---CCCcceEEEEeeccCCccEEEEEEECCEEEEEEEccCceeeh
Confidence 344444445555555666766643322111 111247899999998876666666554433344455543333
No 137
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=32.08 E-value=3.4e+02 Score=23.60 Aligned_cols=62 Identities=16% Similarity=0.379 Sum_probs=34.9
Q ss_pred ceEEEEEc-CccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCC-eEEEEE
Q 042788 161 RAFGMIAG-GTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNR-FKVYYV 226 (258)
Q Consensus 161 ~~vvliag-GtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~-~~v~~~ 226 (258)
+++++|.| .+|+. +++...+++..+.+.+++++..+|+.+.. .+-..++.+-+|++ .++.++
T Consensus 3 RKvalITGanSglG--l~i~~RLl~~~De~~~ltl~ltcR~~~ka--e~vc~~lk~f~p~~~i~~~yv 66 (341)
T KOG1478|consen 3 RKVALITGANSGLG--LAICKRLLAEDDENVRLTLCLTCRNMSKA--EAVCAALKAFHPKSTIEVTYV 66 (341)
T ss_pred ceEEEEecCCCccc--HHHHHHHHhccCCceeEEEEEEeCChhHH--HHHHHHHHHhCCCceeEEEEE
Confidence 45666665 34444 34666666655555678999999986532 12234455555532 444443
No 138
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=31.69 E-value=85 Score=28.10 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=26.1
Q ss_pred EEEEEEeC-----CCEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 59 LTKRTPIS-----HNTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 59 v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
|++++.++ .++++++|+.++. ...|+||+++.|...
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~--~~~y~~GD~l~i~p~ 42 (360)
T cd06199 2 VLENRLLTGPGSEKETRHIELDLEGS--GLSYEPGDALGVYPT 42 (360)
T ss_pred cceeEeCCCCCCCccEEEEEEeCCCC--CCcccCCCEEEEEcC
Confidence 34445554 3488999998764 378999999999654
No 139
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=30.52 E-value=17 Score=26.86 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCC
Q 042788 23 GLLVAVAAMIITIAVYLCSIKKSR 46 (258)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~ 46 (258)
+++++.+++.+.+|||+.|++.=|
T Consensus 31 iL~VILgiLLliGCWYckRRSGYk 54 (118)
T PF14991_consen 31 ILIVILGILLLIGCWYCKRRSGYK 54 (118)
T ss_dssp ------------------------
T ss_pred eHHHHHHHHHHHhheeeeecchhh
Confidence 455666777778999988544333
No 140
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=30.38 E-value=1.2e+02 Score=23.18 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=16.8
Q ss_pred CCccccccccCCCCCEEEEeccc
Q 042788 128 KGRMAHHFREMHEGEYLPVKGPK 150 (258)
Q Consensus 128 ~G~~S~~L~~l~~Gd~v~v~gP~ 150 (258)
+=+....+..+++||+|.+.|-|
T Consensus 76 NIDlaprip~l~~GD~V~f~GeY 98 (131)
T PF11948_consen 76 NIDLAPRIPWLQKGDQVEFYGEY 98 (131)
T ss_pred ccCccccCcCcCCCCEEEEEEEE
Confidence 44444667789999999997654
No 141
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=29.99 E-value=50 Score=25.85 Aligned_cols=49 Identities=20% Similarity=0.372 Sum_probs=27.7
Q ss_pred EEEEEEEecCCccccc--cccCCCCC--EEEEecccceeeecCCCCceEEEEEcCccHH
Q 042788 119 FELVVKMYPKGRMAHH--FREMHEGE--YLPVKGPKGRLKYKVGQARAFGMIAGGTGIT 173 (258)
Q Consensus 119 l~~~Vk~~~~G~~S~~--L~~l~~Gd--~v~v~gP~G~f~~~~~~~~~vvliagGtGIt 173 (258)
+.+.|+..+.-...+| .-++--|| .|.+.||+=.+ .+..+-|.|||||=
T Consensus 61 ~Cvliq~~p~k~GdryEaiySfyfGdyGhISvqGpy~t~------eDtyLAVTGGtGiF 113 (176)
T PF06351_consen 61 ICVLIQHVPEKKGDRYEAIYSFYFGDYGHISVQGPYLTY------EDTYLAVTGGTGIF 113 (176)
T ss_dssp EEEEEEEECCCTEEEEEEEEEEE-GGGEEEEEEEEEETT------S-EEEEEEEEEETT
T ss_pred EEEEEEeccccCCceEEEEEEEEecccceEEEecccccc------cceeEEEeccCcee
Confidence 5666666544333333 23444555 46666665443 25678999999984
No 142
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=29.84 E-value=1.4e+02 Score=26.46 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=41.9
Q ss_pred CCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecC-----------C--cccccc-----ccCCCCCEE
Q 042788 83 LGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPK-----------G--RMAHHF-----REMHEGEYL 144 (258)
Q Consensus 83 ~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~-----------G--~~S~~L-----~~l~~Gd~v 144 (258)
..|+||++|.-.. -|+-|++++.. .+.|..+. | .+|.|. ...+.|++|
T Consensus 89 ~~f~~GD~V~~~~-------GWq~y~i~~~~-------~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~Getv 154 (340)
T COG2130 89 PGFQPGDIVVGVS-------GWQEYAISDGE-------GLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETV 154 (340)
T ss_pred CCCCCCCEEEecc-------cceEEEeechh-------hceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEE
Confidence 5577888775432 36788887753 12222110 1 134442 267789999
Q ss_pred EEecccce---e--eecCCCCceEEEEEcCc
Q 042788 145 PVKGPKGR---L--KYKVGQARAFGMIAGGT 170 (258)
Q Consensus 145 ~v~gP~G~---f--~~~~~~~~~vvliagGt 170 (258)
.+++.-|. . .+-.-+.-++|=+|||-
T Consensus 155 vVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~ 185 (340)
T COG2130 155 VVSAAAGAVGSVVGQIAKLKGCRVVGIAGGA 185 (340)
T ss_pred EEEecccccchHHHHHHHhhCCeEEEecCCH
Confidence 88855553 2 12223456788888874
No 143
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=29.41 E-value=46 Score=25.07 Aligned_cols=19 Identities=5% Similarity=0.247 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 042788 22 FGLLVAVAAMIITIAVYLC 40 (258)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ 40 (258)
++++|+++++.+++++++.
T Consensus 5 ~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555554
No 144
>PF11325 DUF3127: Domain of unknown function (DUF3127); InterPro: IPR021474 This bacterial family of proteins has no known function.
Probab=29.25 E-value=1.3e+02 Score=20.97 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=30.3
Q ss_pred cEEEE-EEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCC
Q 042788 54 FKEFK-LTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEG 100 (258)
Q Consensus 54 ~~~~~-v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g 100 (258)
|..-. |++-..--|.-+.+.+.-.......++++||-|.+.+. ..|
T Consensus 21 w~Kre~Vlet~~qYP~~i~f~~~~dk~~~l~~~~~Gd~V~Vsf~-i~~ 67 (84)
T PF11325_consen 21 WKKREFVLETEEQYPQKICFEFWGDKIDLLDNFQVGDEVKVSFN-IEG 67 (84)
T ss_pred cEEEEEEEeCCCcCCceEEEEEEcchhhhhccCCCCCEEEEEEE-eec
Confidence 54433 33344445677778887755443468999999999987 444
No 145
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=29.03 E-value=1.1e+02 Score=21.39 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=20.4
Q ss_pred EEEEEEEEecCCccccccccCCCCCEEEEecccce
Q 042788 118 YFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGR 152 (258)
Q Consensus 118 ~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~ 152 (258)
.+...+-+ +.|...+....+++||+|.+.|-...
T Consensus 29 ~i~cv~f~-~~g~~~~~~~~l~~Gd~V~v~G~v~~ 62 (91)
T cd04482 29 EIDCAAYE-PTKEFRDVVRLLIPGDEVTVYGSVRP 62 (91)
T ss_pred EEEEEEEC-cccccccccCCCCCCCEEEEEEEEec
Confidence 44443332 14444444567899999998875444
No 146
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=29.01 E-value=1.5e+02 Score=22.09 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=26.9
Q ss_pred cccCCCCCEEEEEEEEec-CCccccccccCCCCCEEEEecccceeeec
Q 042788 110 ITLDSDIGYFELVVKMYP-KGRMAHHFREMHEGEYLPVKGPKGRLKYK 156 (258)
Q Consensus 110 ~s~~~~~~~l~~~Vk~~~-~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~ 156 (258)
...|.+.+.+.+.=.+.. .|..=..|.++++||+|.+.-..+.+.+.
T Consensus 36 ~~~pg~~gn~viaGH~~~~~~~~F~~L~~l~~Gd~v~v~~~~~~~~Y~ 83 (126)
T cd06166 36 TAMPGENGNFAIAGHRSYTYGRIFNRLDEVEKGDEIKVTTKNGTYKYK 83 (126)
T ss_pred CCCCCCCceEEEEeCcCCCCCcccCChHHCCCCCEEEEEECCEEEEEE
Confidence 344444455544333211 22222446799999999999875556554
No 147
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=28.76 E-value=2.1e+02 Score=21.57 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=16.7
Q ss_pred eEEEEEcCccHHHHHHHHHHHHhCC
Q 042788 162 AFGMIAGGTGITPMFQLTRAILENP 186 (258)
Q Consensus 162 ~vvliagGtGItp~~sil~~l~~~~ 186 (258)
.+++++|+.||. .++++++.+++
T Consensus 2 ~~lItGa~~giG--~~~a~~l~~~g 24 (167)
T PF00106_consen 2 TVLITGASSGIG--RALARALARRG 24 (167)
T ss_dssp EEEEETTTSHHH--HHHHHHHHHTT
T ss_pred EEEEECCCCHHH--HHHHHHHHhcC
Confidence 456667777787 57888888874
No 148
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=28.65 E-value=76 Score=27.88 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=18.9
Q ss_pred eEEEEEcCccHHHHHHHHHHHH
Q 042788 162 AFGMIAGGTGITPMFQLTRAIL 183 (258)
Q Consensus 162 ~vvliagGtGItp~~sil~~l~ 183 (258)
+++.++||+|.+-+++=++++.
T Consensus 2 ~iv~lgGGtG~~~lL~GL~~~~ 23 (303)
T PRK13606 2 MITVLSGGTGTAKLLRGLKAVL 23 (303)
T ss_pred eEEEEeCccCHHHHHHHHHhcc
Confidence 5789999999999888888764
No 149
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=28.12 E-value=2.4e+02 Score=22.07 Aligned_cols=62 Identities=16% Similarity=0.314 Sum_probs=39.8
Q ss_pred CCCCCcEEEEEEecCCCCeeeeeccccccCC---CCCEEEEEEEEecCCccccccccCCCCCEEEEecccceeee
Q 042788 84 GLPVGQHILCRGKDSEGNEVIRPYTPITLDS---DIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKY 155 (258)
Q Consensus 84 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~---~~~~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~ 155 (258)
....|..|.+... +| ..+.|+++.... ..+.+. ...+..+.|-..++||.|.+..|.|...+
T Consensus 83 ~V~~Gs~V~l~d~--~~--~~~~~~iVgp~ead~~~~~IS------~~SPlG~ALlGk~~GD~v~v~~p~g~~~~ 147 (156)
T TIGR01461 83 KVFFGAWVELEND--DG--VTHRFRIVGYDEIDGRKNYIS------IDSPLARALLKKEVGDEVVVNTPAGEASW 147 (156)
T ss_pred EEecCeEEEEEEC--CC--CEEEEEEEChHHhCcCCCeEC------CCCHHHHHHcCCCCCCEEEEEcCCCcEEE
Confidence 3567888888643 34 346787765432 223222 24555566777899999999999997544
No 150
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=27.54 E-value=99 Score=27.88 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=22.0
Q ss_pred CCEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 67 HNTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 67 ~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
.+++.++|+.++. ...|+||+++.|...
T Consensus 15 ~~~~hl~l~~~~~--~~~y~~GD~l~v~p~ 42 (382)
T cd06207 15 RSTRHIEFDLGGS--GLSYETGDNLGIYPE 42 (382)
T ss_pred ceEEEEEEecCCC--CCccCCCCEEEEEcC
Confidence 3588999998653 378999999999644
No 151
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=26.93 E-value=97 Score=23.99 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=38.9
Q ss_pred CCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccccCCCCCEEEEecccceeee
Q 042788 84 GLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKY 155 (258)
Q Consensus 84 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~ 155 (258)
....|..|.+... ..| ....|++......+-... .|- ...+....|-..++||.+.+..|.|...+
T Consensus 80 ~V~~Gs~V~l~~~-~~g--~~~~~~lVgp~e~d~~~~-~IS--~~SPlG~ALlG~~~Gd~v~v~~p~g~~~~ 145 (151)
T TIGR01462 80 VVGFGSTVTIKDL-DTG--EEETYTIVGSWEADPKEG-KIS--IDSPLGKALIGKKVGDVVEVQTPKGEKEY 145 (151)
T ss_pred EEeeCCEEEEEEC-CCC--CEEEEEEECchhcCccCC-eec--CCCHHHHHHcCCCCCCEEEEEeCCCcEEE
Confidence 4567888888744 223 235677766432211000 111 13455556667899999999999997443
No 152
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=26.76 E-value=26 Score=27.95 Aligned_cols=14 Identities=50% Similarity=0.802 Sum_probs=12.6
Q ss_pred ceEEEEEcCccHHH
Q 042788 161 RAFGMIAGGTGITP 174 (258)
Q Consensus 161 ~~vvliagGtGItp 174 (258)
-++++.-||||+||
T Consensus 68 ~DvvlttGGTG~t~ 81 (169)
T COG0521 68 VDVVLTTGGTGITP 81 (169)
T ss_pred CCEEEEcCCccCCC
Confidence 57899999999997
No 153
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=26.74 E-value=67 Score=24.67 Aligned_cols=13 Identities=46% Similarity=0.414 Sum_probs=6.5
Q ss_pred HHHHHHHHhhhhh
Q 042788 28 VAAMIITIAVYLC 40 (258)
Q Consensus 28 ~~~~~~~~~~~~~ 40 (258)
+++++.+++|++.
T Consensus 15 ~l~~~g~~~~~~~ 27 (142)
T PRK07718 15 VIALIGTAALVLV 27 (142)
T ss_pred HHHHHHHHHHhhh
Confidence 3444445566555
No 154
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=26.25 E-value=1.8e+02 Score=22.35 Aligned_cols=62 Identities=13% Similarity=0.198 Sum_probs=40.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCCcEEEEEEEEEEeCCCEeEEEEECCCC
Q 042788 15 QVSQAAFFGLLVAVAAMIITIAVYLCSIKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKS 79 (258)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~ 79 (258)
.-....++.-.++++++.++.+|.+.+-... . ..+..+..++.+...++++-..+-++..+.
T Consensus 21 ~~~~~~~~gsL~~iL~lil~~~wl~kr~~~~-~--~~~~~~~lkil~~~~lG~resV~lV~V~~~ 82 (137)
T COG3190 21 ALELAQMFGSLILILALILFLAWLVKRLGRA-P--LFKGSSGLKILASRSLGSRESVVLVEVGDK 82 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c--cCCcccceeeecccccCCCceEEEEEECCE
Confidence 3345667767777777777888887754421 1 123345678888888888766666665554
No 155
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=26.02 E-value=2.3e+02 Score=24.08 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=15.6
Q ss_pred CceEEEEEcCccHHHHHHHHHHHHhC
Q 042788 160 ARAFGMIAGGTGITPMFQLTRAILEN 185 (258)
Q Consensus 160 ~~~vvliagGtGItp~~sil~~l~~~ 185 (258)
.++++++||-.||. +++.++|+..
T Consensus 5 GKna~vtggagGIG--l~~sk~Ll~k 28 (261)
T KOG4169|consen 5 GKNALVTGGAGGIG--LATSKALLEK 28 (261)
T ss_pred CceEEEecCCchhh--HHHHHHHHHc
Confidence 47788887766666 4555566654
No 156
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=25.95 E-value=70 Score=28.37 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=21.2
Q ss_pred CceEEEEEcCccHHHHHHHHHHHH
Q 042788 160 ARAFGMIAGGTGITPMFQLTRAIL 183 (258)
Q Consensus 160 ~~~vvliagGtGItp~~sil~~l~ 183 (258)
...++.++||||+.-+++-++...
T Consensus 7 ~~kvvvlgGGtGl~~lL~gLk~~~ 30 (323)
T COG0391 7 KPKVVVLGGGTGLPKLLSGLKRLL 30 (323)
T ss_pred CceEEEEcCCCCHHHHHHHHHhhc
Confidence 457899999999999999998876
No 157
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=25.42 E-value=1.9e+02 Score=23.04 Aligned_cols=42 Identities=14% Similarity=0.288 Sum_probs=26.6
Q ss_pred cCCCCCEEEEEEEEecCCccccccccCCCCCEEEEecccce-eeec
Q 042788 112 LDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGR-LKYK 156 (258)
Q Consensus 112 ~~~~~~~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~-f~~~ 156 (258)
.|.+.|...+.=.+ +. .=..|.++++||+|.+.-+.|. +.+.
T Consensus 86 ~PG~~Gn~VIAGHr--dt-~F~~L~~L~~GD~I~v~~~~g~~~~Y~ 128 (174)
T TIGR03784 86 QPGAQGNSVIAGHR--DT-HFAFLQELRPGDVIRLQTPDGQWQSYQ 128 (174)
T ss_pred CCCCCCcEEEEeeC--Cc-cCCChhhCCCCCEEEEEECCCeEEEEE
Confidence 34444555444332 22 2244789999999999999997 3454
No 158
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=25.16 E-value=98 Score=27.13 Aligned_cols=20 Identities=20% Similarity=0.574 Sum_probs=14.5
Q ss_pred EEEEEcCccHHHHHHHHHHH
Q 042788 163 FGMIAGGTGITPMFQLTRAI 182 (258)
Q Consensus 163 vvliagGtGItp~~sil~~l 182 (258)
++.++||||.+-++.=++++
T Consensus 1 Ivvl~GGtG~~~ll~gL~~~ 20 (300)
T PF01933_consen 1 IVVLGGGTGLSKLLRGLKRV 20 (300)
T ss_dssp EEEEE-SCHHHHHHHHHTTS
T ss_pred CEEEeCcccHHHHHHHHHHh
Confidence 68999999999766655544
No 159
>PF01887 SAM_adeno_trans: S-adenosyl-l-methionine hydroxide adenosyltransferase; InterPro: IPR002747 The S-adenosyl-L-methionine (SAM) hydroxide adenosyltransferase family groups several fluorinase and chlorinase enzymes whose common feature is that they mediate nucleophilic reactions of their respective halide ions to the C-5' carbon of SAM []. These enzymes utilise a rigorously conserved amino acid side chain triad (Asp-Arg-His) which may have a role in activating water to hydroxide ion. Structural studies indicate that the protein is a homotrimer, with each monomer being composed of N- and C-terminal domains [, ]. The N-terminal domain has a central seven-stranded beta-sheet, which combines parallel and antiparallel strands sandwiched between alpha helices. The C-terminal domain forms a beta-barrel with a greek-key topology. SAM is bound at the interface between the C-terminal domain of one monomer and the N-terminal domain of the neighbouring monomer, with a total of three molecules bound by the trimer.; PDB: 2CW5_C 1WU8_C 2WR8_A 2Q6O_B 2Q6L_A 2Q6K_A 2Q6I_A 2V7T_B 2C4U_F 1RQP_C ....
Probab=24.68 E-value=90 Score=26.69 Aligned_cols=81 Identities=17% Similarity=0.291 Sum_probs=43.8
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCC-CCeeeeecccccc------CCCCCEEEEEEEEecC
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSE-GNEVIRPYTPITL------DSDIGYFELVVKMYPK 128 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~-g~~~~R~ySi~s~------~~~~~~l~~~Vk~~~~ 128 (258)
..+|+.+..-.+=+ ..+... .+....|..+.+.+.+.. -....+.|+=... .+..|.+|+.|. .
T Consensus 171 ~g~Vi~iD~FGNli--tnI~~~----~l~~~~g~~~~v~~~~~~~~~~~~~ty~~v~~Ge~~~l~~S~G~LEiAvn---~ 241 (258)
T PF01887_consen 171 RGEVIYIDHFGNLI--TNISRE----LLGVRQGRRFRVRIGGAEIIIPIVRTYADVPPGELLALFNSSGYLEIAVN---Q 241 (258)
T ss_dssp EEEEEEEETTSEEE--EEEEHH----HHCCTTT-EEEEEETTTCEEEEEESSGGGSTTTSEEEEETTTSEEEEEET---T
T ss_pred EEEEEEECccCCee--eCCCHH----HcCCCCCCEEEEEecCCceEEeEeCccccCCCCCEEEEECCCCCEEEEEe---C
Confidence 46666665533222 233221 126788998988876221 1234566662221 123588999888 4
Q ss_pred CccccccccCCCCCEEEE
Q 042788 129 GRMAHHFREMHEGEYLPV 146 (258)
Q Consensus 129 G~~S~~L~~l~~Gd~v~v 146 (258)
|.+++.| .+++||+|.+
T Consensus 242 G~Aa~~l-gl~~Gd~V~i 258 (258)
T PF01887_consen 242 GSAAELL-GLKPGDRVRI 258 (258)
T ss_dssp B-HHHHH-T--TTSEEEE
T ss_pred cCHHHHc-CCCCCCEEEC
Confidence 7776655 6899999875
No 160
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=24.15 E-value=1.1e+02 Score=23.92 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=42.1
Q ss_pred CCCCCcEEEEEEecCCCCeeeeeccccccCCCCCE--EEEEEEEecCCccccccccCCCCCEEEEecccceeee
Q 042788 84 GLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGY--FELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKY 155 (258)
Q Consensus 84 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~--l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~ 155 (258)
....|..|.+.. .+| ..+.|+|...+..+.. -.-.|- ...+..+.|-..++||.|.+..|.|...+
T Consensus 82 ~V~~Gs~Vtl~~--~~g--~~~~~~IVg~~e~d~~~~~~~~IS--~~SPlG~ALlGk~vGD~v~v~~p~g~~~~ 149 (158)
T PRK05892 82 TLPGGTEVTLRF--PDG--EVETMHVISVVEETPVGREAETLT--ADSPLGQALAGHQAGDTVTYSTPQGPAQV 149 (158)
T ss_pred EEEcCcEEEEEE--CCC--CEEEEEEeCchhcCcccccCCEEc--cCCHHHHHHhCCCCCCEEEEEcCCCcEEE
Confidence 457789998874 334 3578888875533110 011222 24556666778899999999999997443
No 161
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=24.06 E-value=1e+02 Score=27.13 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=15.8
Q ss_pred EEEEEcCccHHHHHHHHHHH
Q 042788 163 FGMIAGGTGITPMFQLTRAI 182 (258)
Q Consensus 163 vvliagGtGItp~~sil~~l 182 (258)
+++++||||.+-++.=++++
T Consensus 1 iv~igGGtGl~~ll~gLk~~ 20 (309)
T cd07044 1 VVVFGGGTGLPVLLRGLKEF 20 (309)
T ss_pred CEEEeccccHHHHHHHHHhc
Confidence 47899999999877666644
No 162
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=23.79 E-value=2.6e+02 Score=23.91 Aligned_cols=62 Identities=23% Similarity=0.330 Sum_probs=37.7
Q ss_pred ceEEEEEcCccHHHH-HHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEc
Q 042788 161 RAFGMIAGGTGITPM-FQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLS 228 (258)
Q Consensus 161 ~~vvliagGtGItp~-~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s 228 (258)
+++++..||++-..+ ..+++.+.+.. ..-++.++.+.... ..++++++.+.+++ ++++....
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~-~~~~i~vv~G~~~~----~~~~l~~~~~~~~~-i~~~~~~~ 233 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQ-INISITLVTGSSNP----NLDELKKFAKEYPN-IILFIDVE 233 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccc-cCceEEEEECCCCc----CHHHHHHHHHhCCC-EEEEeCHH
Confidence 467778888887654 35566665432 23456666655433 34778888777665 77654443
No 163
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=23.67 E-value=57 Score=28.73 Aligned_cols=20 Identities=20% Similarity=0.458 Sum_probs=16.0
Q ss_pred EEEEEcCccHHHHHHHHHHH
Q 042788 163 FGMIAGGTGITPMFQLTRAI 182 (258)
Q Consensus 163 vvliagGtGItp~~sil~~l 182 (258)
+|+++||||.+-++.=++.+
T Consensus 1 iV~igGGtGl~~ll~gLk~~ 20 (308)
T cd07187 1 IVAFGGGTGLSTLLRGLKKY 20 (308)
T ss_pred CEEEeccccHHHHHHHHHhc
Confidence 57999999999877766654
No 164
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=22.82 E-value=74 Score=24.32 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=36.7
Q ss_pred CCCcEEEEEEecCCCCeeeeeccccccCC---CCCEEEEEEEEecCCccccccccCCCCCEEEEecccce
Q 042788 86 PVGQHILCRGKDSEGNEVIRPYTPITLDS---DIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGR 152 (258)
Q Consensus 86 ~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~---~~~~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~ 152 (258)
..|..|.+... ..+ ..+.|+++...+ ..+.+.+ ..+....|-..++||.+.+..|.|.
T Consensus 56 ~~Gs~V~~~~~-~~~--~~~~~~iVg~~Ead~~~~~ISi------~SPlG~ALlG~~~Gd~v~v~~p~G~ 116 (137)
T PRK05753 56 TMNSRVRFRDL-SSG--EERVRTLVYPADADDSEGQLSV------LAPVGAALLGLSVGQSIDWPLPGGK 116 (137)
T ss_pred EeCCEEEEEEC-CCC--CEEEEEEEChhHcCccCCcCcc------cCHHHHHHcCCCCCCEEEEECCCCC
Confidence 45677777643 223 457888876532 2232221 3444555667899999999999994
No 165
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=22.72 E-value=3.5e+02 Score=24.65 Aligned_cols=83 Identities=13% Similarity=0.080 Sum_probs=54.6
Q ss_pred cCCCCCEEEEe--cccce-eee-cCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHH
Q 042788 137 EMHEGEYLPVK--GPKGR-LKY-KVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDS 212 (258)
Q Consensus 137 ~l~~Gd~v~v~--gP~G~-f~~-~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~ 212 (258)
-+++||+|.+- |.||. |.- -..-..++..+...-|-++=..-+++.++...+..-+.+.|+-.+..-+-=.+++.+
T Consensus 76 l~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~ 155 (383)
T COG0075 76 LVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAK 155 (383)
T ss_pred ccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHH
Confidence 56799997544 88887 321 111224566777777766666777777775444556777777666665556788888
Q ss_pred HHhhCCC
Q 042788 213 FATNSPN 219 (258)
Q Consensus 213 l~~~~~~ 219 (258)
+++++..
T Consensus 156 ~~k~~g~ 162 (383)
T COG0075 156 AAKEHGA 162 (383)
T ss_pred HHHHcCC
Confidence 8888755
No 166
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=22.44 E-value=4.4e+02 Score=21.60 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=45.1
Q ss_pred EEEEEEEEEeCCCEeEEEEEC-CCCCccCC-CCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccc
Q 042788 56 EFKLTKRTPISHNTAKFRFAL-PKSTSILG-LPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAH 133 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~-~~~~~~~~-~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~ 133 (258)
.++|.+++.. ++-..++|+. |.. ..+ .-+-.+|.+. | =+.|+....+ +.|++.+-. .-.-..
T Consensus 106 ~~~i~~~~~~-~~~~~~~~~~~p~~--~~~yiv~KGsIaid-----G----vSLTV~~v~~--~~f~v~lIP--~T~~~T 169 (200)
T TIGR00187 106 TAEIAKIETS-ENNVQFWFKLQDSE--LMKYIVEKGSIAVD-----G----ISLTIGKVTE--TRFCVSLIP--HTLENT 169 (200)
T ss_pred EEEEEEEEEc-CCcEEEEEEECCHH--HHhccccCCEEEEe-----e----eEEEEEeEcC--CEEEEEEeh--HhHhhC
Confidence 5778888765 4566788888 544 233 2344455543 3 2457777643 456654432 222223
Q ss_pred ccccCCCCCEEEEe
Q 042788 134 HFREMHEGEYLPVK 147 (258)
Q Consensus 134 ~L~~l~~Gd~v~v~ 147 (258)
-|..+++||.|.++
T Consensus 170 ~l~~~~~Gd~VNiE 183 (200)
T TIGR00187 170 ILGLKKLGDRVNIE 183 (200)
T ss_pred ccccCCCCCEEEEe
Confidence 36788999999887
No 167
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=21.75 E-value=64 Score=28.42 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=15.5
Q ss_pred EEEEEcCccHHHHHHHHHHH
Q 042788 163 FGMIAGGTGITPMFQLTRAI 182 (258)
Q Consensus 163 vvliagGtGItp~~sil~~l 182 (258)
+|+++||||.+-++.=++.+
T Consensus 1 vV~igGGtGl~~ll~gLk~~ 20 (310)
T TIGR01826 1 VVAIGGGTGLSVLLRGLKEL 20 (310)
T ss_pred CEEEeCcchHHHHHHHHHhc
Confidence 57899999999877666543
No 168
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=21.69 E-value=3.1e+02 Score=20.23 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=52.5
Q ss_pred CCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcc
Q 042788 52 ENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRM 131 (258)
Q Consensus 52 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~ 131 (258)
.+.+.++|+..+.--.+- +++... .-+..+..|++.|.+.-- .+| ...-.|.|-..+. +|.+.+ +|..
T Consensus 7 sKiHratVT~a~L~YeGS--itID~~-Ll~aagi~~~E~V~I~Nv-~NG-~Rf~TYvI~g~~g-Sg~I~l------NGAA 74 (111)
T cd06919 7 SKIHRATVTEADLNYEGS--ITIDED-LLEAAGILPYEKVLVVNV-NNG-ARFETYVIPGERG-SGVICL------NGAA 74 (111)
T ss_pred hcccceEEecccccccee--EEECHH-HHHhcCCCCCCEEEEEEC-CCC-cEEEEEEEEcCCC-CCEEEe------CCHH
Confidence 466778888877665555 333321 112478999999988643 344 3456777665432 243322 5554
Q ss_pred ccccccCCCCCEEEEecccceee
Q 042788 132 AHHFREMHEGEYLPVKGPKGRLK 154 (258)
Q Consensus 132 S~~L~~l~~Gd~v~v~gP~G~f~ 154 (258)
. +..++||.|-+.. |+.+.
T Consensus 75 A---r~~~~GD~vII~s-y~~~~ 93 (111)
T cd06919 75 A---RLGQPGDRVIIMA-YALMD 93 (111)
T ss_pred H---hcCCCCCEEEEEE-CccCC
Confidence 3 3468999998865 66544
No 169
>COG0776 HimA Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]
Probab=21.40 E-value=68 Score=22.93 Aligned_cols=20 Identities=20% Similarity=0.539 Sum_probs=17.2
Q ss_pred ccCCCCCEEEEecccceeeec
Q 042788 136 REMHEGEYLPVKGPKGRLKYK 156 (258)
Q Consensus 136 ~~l~~Gd~v~v~gP~G~f~~~ 156 (258)
..|..|+.|.+.| +|.|.+.
T Consensus 35 ~aL~~G~~V~l~g-FG~F~v~ 54 (94)
T COG0776 35 EALAKGERVELRG-FGTFEVR 54 (94)
T ss_pred HHHHcCCeEEEee-eeeeEee
Confidence 3688999999998 9999875
No 170
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=21.16 E-value=1.8e+02 Score=19.61 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=20.5
Q ss_pred EEEEEEEEecCCc---cccccc--cCCCCCEEEEec
Q 042788 118 YFELVVKMYPKGR---MAHHFR--EMHEGEYLPVKG 148 (258)
Q Consensus 118 ~l~~~Vk~~~~G~---~S~~L~--~l~~Gd~v~v~g 148 (258)
..++.++.+.+|. .+.|-. .|+|||+.++.-
T Consensus 28 ~~syr~~Vq~NGnLLIG~AYT~~m~L~PGdEFeI~L 63 (71)
T PF14250_consen 28 KASYRVSVQGNGNLLIGSAYTKQMGLKPGDEFEIKL 63 (71)
T ss_pred CceEEEEEecCCCEEEcHHHHHHhCCCCCCEEEEEe
Confidence 3555555555776 355543 789999988863
No 171
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=21.03 E-value=3.3e+02 Score=23.74 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=28.1
Q ss_pred cEEEEEEEEEEeCC--------------CEeEEEEECCCCCccCCCCCCcEEEEEEec
Q 042788 54 FKEFKLTKRTPISH--------------NTAKFRFALPKSTSILGLPVGQHILCRGKD 97 (258)
Q Consensus 54 ~~~~~v~~~~~~~~--------------~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~ 97 (258)
..+++|.++...+. .++++++..+.. ...++||.++.+.+..
T Consensus 271 ~~~g~V~~Is~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~--~~~l~pGm~~~v~i~~ 326 (331)
T PRK03598 271 PYHGQIGFVSPTAEFTPKTVETPDLRTDLVYRLRIVVTDA--DDALRQGMPVTVRFAD 326 (331)
T ss_pred EEEEEEEEEcCccccCCccccCcccceeEEEEEEEEecCc--ccccCCCCeEEEEEec
Confidence 34677777776532 145667766554 2578999999998873
No 172
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=20.75 E-value=2.9e+02 Score=20.86 Aligned_cols=87 Identities=10% Similarity=0.140 Sum_probs=52.6
Q ss_pred CCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcc
Q 042788 52 ENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRM 131 (258)
Q Consensus 52 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~ 131 (258)
.+.+.++|+..+.--.+-+ ++... .-+..+..|++.|.+.-- .+| ...-.|.|-..+.. |.+.+ +|..
T Consensus 8 sKiHratVT~a~L~Y~GSi--tID~~-Ll~aagi~p~E~V~V~Nv-~NG-~Rf~TYvI~g~~GS-g~I~l------NGAA 75 (126)
T PRK05449 8 SKIHRATVTEADLNYEGSI--TIDED-LLDAAGILENEKVQIVNV-NNG-ARFETYVIAGERGS-GVICL------NGAA 75 (126)
T ss_pred hcccceEEeccccccceeE--EECHH-HHHhcCCCCCCEEEEEEC-CCC-cEEEEEEEEcCCCC-CEEEe------CCHH
Confidence 4667788888776655553 33321 112478899999988643 344 44667776654432 43322 5655
Q ss_pred ccccccCCCCCEEEEecccceee
Q 042788 132 AHHFREMHEGEYLPVKGPKGRLK 154 (258)
Q Consensus 132 S~~L~~l~~Gd~v~v~gP~G~f~ 154 (258)
.+ ..++||.|-+.. |+.+.
T Consensus 76 Ar---~~~~GD~vII~a-y~~~~ 94 (126)
T PRK05449 76 AR---LVQVGDLVIIAA-YAQMD 94 (126)
T ss_pred Hh---cCCCCCEEEEEE-CccCC
Confidence 43 468999998865 55543
No 173
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=20.73 E-value=1.4e+02 Score=26.83 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=20.6
Q ss_pred ceEEEEEcCcc--HHHHHHHHHHHHhCC
Q 042788 161 RAFGMIAGGTG--ITPMFQLTRAILENP 186 (258)
Q Consensus 161 ~~vvliagGtG--Itp~~sil~~l~~~~ 186 (258)
.++++.||||| +-|. ++++++.+.+
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~ 32 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHY 32 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcC
Confidence 46788899996 8888 9999998753
No 174
>KOG1625 consensus DNA polymerase alpha-primase complex, polymerase-associated subunit B [Replication, recombination and repair]
Probab=20.33 E-value=3.2e+02 Score=26.24 Aligned_cols=79 Identities=23% Similarity=0.356 Sum_probs=45.5
Q ss_pred eEEEEECCCCCccCCCCCCcEEEEEEecCCCCe-------eeeecc-ccccCCCCCEEEE----EEEEecCCcccc----
Q 042788 70 AKFRFALPKSTSILGLPVGQHILCRGKDSEGNE-------VIRPYT-PITLDSDIGYFEL----VVKMYPKGRMAH---- 133 (258)
Q Consensus 70 ~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~-------~~R~yS-i~s~~~~~~~l~~----~Vk~~~~G~~S~---- 133 (258)
.++++...+..+ ..+-|||-|.++-.+..|.. ..+|+. +++...++..++. .|- -|++|.
T Consensus 281 ~~Vrldls~l~e-~SiFPGQIVavkG~N~~G~~l~v~ki~~~~plp~~~~~~qed~~~~~~~~ivva---sGPyt~sDnl 356 (600)
T KOG1625|consen 281 VRVRLDLSRLKE-YSIFPGQIVAVKGKNPTGEKLTVEKILPIPPLPIPVQPLQEDATFEANTVIVVA---SGPYTASDNL 356 (600)
T ss_pred ceEEeehhhccc-eeecCCcEEEEeeecCCCCeEEeeeeccCCCCCCCcCchhhhhhccccceEEEE---ecCccCcccc
Confidence 456666666543 67889999999876555642 234454 2332233334444 343 577654
Q ss_pred -------ccc--cCCCCCEEEEecccce
Q 042788 134 -------HFR--EMHEGEYLPVKGPKGR 152 (258)
Q Consensus 134 -------~L~--~l~~Gd~v~v~gP~G~ 152 (258)
.|. ..++-|.+.+.||+=.
T Consensus 357 ~yepL~dll~~v~~~~pdvLIL~GPFlD 384 (600)
T KOG1625|consen 357 SYEPLCDLLDYVNAERPDVLILFGPFLD 384 (600)
T ss_pred chhHHHHHHHHHhcCCCCEEEEeccccC
Confidence 222 2345677888898854
No 175
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=20.26 E-value=4e+02 Score=25.50 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=17.3
Q ss_pred CceEEEEE-cCccHHHHHHHHHHHHh
Q 042788 160 ARAFGMIA-GGTGITPMFQLTRAILE 184 (258)
Q Consensus 160 ~~~vvlia-gGtGItp~~sil~~l~~ 184 (258)
.+++|.|+ ||+.+.|- .+.+++..
T Consensus 114 ~~~vV~IGIGGS~LGp~-~v~~AL~~ 138 (528)
T PRK14096 114 FTDVLWIGIGGSALGPQ-FVAEALQP 138 (528)
T ss_pred CCeEEEECCCcchHHHH-HHHHHHhh
Confidence 47889999 99999884 34555543
Done!