Query 042788
Match_columns 258
No_of_seqs 252 out of 1500
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 16:32:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eix_A NADH-cytochrome B5 redu 100.0 3.1E-40 1.1E-44 278.5 24.8 207 45-253 2-208 (243)
2 1umk_A B5R, NADH-cytochrome B5 100.0 4.8E-39 1.7E-43 276.0 24.6 211 42-253 4-239 (275)
3 2cnd_A NADH-dependent nitrate 100.0 4.1E-37 1.4E-41 263.2 24.0 203 50-253 8-233 (270)
4 1tvc_A Methane monooxygenase c 100.0 1.8E-36 6.3E-41 256.5 17.2 196 47-247 3-202 (250)
5 2r6h_A NADH:ubiquinone oxidore 100.0 3.1E-35 1E-39 254.0 22.9 200 48-251 4-248 (290)
6 1qfj_A Protein (flavin reducta 100.0 6.8E-36 2.3E-40 250.2 17.2 186 55-249 3-189 (232)
7 1fdr_A Flavodoxin reductase; f 100.0 7.2E-35 2.5E-39 246.3 21.4 187 53-247 3-191 (248)
8 4eh1_A Flavohemoprotein; struc 100.0 4.9E-35 1.7E-39 246.5 19.8 187 52-246 1-195 (243)
9 1cqx_A Flavohemoprotein; globi 100.0 5.9E-34 2E-38 257.0 26.5 194 50-248 150-356 (403)
10 1gvh_A Flavohemoprotein; oxido 100.0 6.3E-35 2.2E-39 262.8 19.2 195 50-248 148-350 (396)
11 3lo8_A Ferredoxin--NADP reduct 100.0 1.8E-34 6E-39 251.9 21.0 197 47-246 21-250 (311)
12 3vo2_A Putative uncharacterize 100.0 2.6E-34 8.8E-39 250.9 21.8 196 48-246 27-248 (310)
13 4g1v_A Flavohemoglobin; three 100.0 3.1E-33 1.1E-37 252.0 26.4 191 51-252 146-355 (399)
14 1krh_A Benzoate 1,2-dioxygenas 100.0 3.3E-34 1.1E-38 252.9 19.4 192 52-251 106-298 (338)
15 3jqq_A Ferredoxin NADP reducta 100.0 9.3E-34 3.2E-38 248.0 19.2 193 50-247 11-265 (316)
16 2bgi_A Ferredoxin-NADP(H) redu 100.0 3.4E-33 1.2E-37 239.4 20.8 186 54-247 16-210 (272)
17 1fnb_A Ferredoxin-NADP+ reduct 100.0 4.2E-33 1.4E-37 243.5 21.6 196 48-246 31-252 (314)
18 2qdx_A Ferredoxin reductase; o 100.0 1.3E-33 4.3E-38 240.1 15.9 185 53-247 2-196 (257)
19 4fk8_A Ferredoxin--NADP reduct 100.0 3.3E-34 1.1E-38 245.4 11.9 188 51-247 16-212 (271)
20 2b5o_A FNR, ferredoxin--NADP r 100.0 2.1E-32 7.1E-37 246.7 21.4 196 49-246 117-340 (402)
21 1ep3_B Dihydroorotate dehydrog 100.0 7.3E-33 2.5E-37 236.1 16.6 182 56-252 7-190 (262)
22 2bmw_A Ferredoxin--NADP reduct 100.0 3.9E-32 1.3E-36 236.3 20.7 195 48-244 15-240 (304)
23 2rc5_A Ferredoxin-NADP reducta 100.0 2.6E-32 8.9E-37 238.5 19.6 194 49-245 16-252 (314)
24 2pia_A Phthalate dioxygenase r 100.0 1.1E-31 3.8E-36 235.3 19.2 169 48-225 2-172 (321)
25 2gpj_A Siderophore-interacting 100.0 1.4E-27 4.8E-32 202.4 15.8 165 51-230 5-170 (252)
26 1ddg_A Sulfite reductase (NADP 99.9 2.9E-25 1E-29 198.0 18.7 136 103-244 159-306 (374)
27 4dql_A Bifunctional P-450/NADP 99.9 7.6E-23 2.6E-27 183.4 14.0 137 103-244 170-323 (393)
28 1f20_A Nitric-oxide synthase; 99.9 1.5E-22 5E-27 184.0 13.2 137 104-244 210-364 (435)
29 2qtl_A MSR;, methionine syntha 99.9 9.9E-23 3.4E-27 189.1 11.3 143 103-246 290-471 (539)
30 1tll_A Nitric-oxide synthase, 99.9 1.6E-21 5.6E-26 186.0 13.3 138 103-244 430-585 (688)
31 3qfs_A CPR, P450R, NADPH--cyto 99.8 4.4E-21 1.5E-25 174.6 12.7 139 103-246 233-391 (458)
32 2bpo_A CPR, P450R, NADPH-cytoc 99.8 2.2E-22 7.7E-27 191.8 1.5 155 86-247 415-617 (682)
33 3qe2_A CPR, P450R, NADPH--cyto 99.8 2.2E-20 7.6E-25 176.3 12.6 139 103-246 393-551 (618)
34 3lrx_A Putative hydrogenase; a 99.7 2.1E-19 7.4E-24 141.5 1.1 104 138-251 1-109 (158)
35 3lyu_A Putative hydrogenase; t 99.7 4.8E-18 1.6E-22 131.4 2.6 100 144-253 3-106 (142)
36 3a1f_A Cytochrome B-245 heavy 99.7 3.8E-17 1.3E-21 131.1 7.3 88 144-231 1-100 (186)
37 3s2u_A UDP-N-acetylglucosamine 84.4 0.92 3.2E-05 39.2 4.4 33 161-196 3-37 (365)
38 3qfs_A CPR, P450R, NADPH--cyto 66.6 20 0.0007 32.0 8.1 46 49-96 57-106 (458)
39 4dql_A Bifunctional P-450/NADP 64.4 16 0.00053 32.0 6.8 40 54-96 6-50 (393)
40 2qtl_A MSR;, methionine syntha 62.2 20 0.00067 32.8 7.3 46 49-96 109-159 (539)
41 3ne5_B Cation efflux system pr 55.8 35 0.0012 29.8 7.6 39 56-96 277-318 (413)
42 1zza_A Stannin, AG8_1; helix, 50.5 27 0.00094 22.6 4.3 23 23-45 21-43 (90)
43 3lnn_A Membrane fusion protein 50.5 66 0.0023 27.1 8.4 40 55-96 239-281 (359)
44 2l82_A Designed protein OR32; 49.7 32 0.0011 24.3 5.0 57 174-234 14-91 (162)
45 3qe2_A CPR, P450R, NADPH--cyto 45.7 67 0.0023 29.8 8.1 40 54-95 222-265 (618)
46 1f20_A Nitric-oxide synthase; 44.5 56 0.0019 28.8 7.1 43 53-96 29-76 (435)
47 3ddy_A Lumazine protein, LUMP; 43.7 1.1E+02 0.0038 23.6 8.4 79 56-150 9-87 (186)
48 2pn0_A Prokaryotic transcripti 43.4 19 0.00065 26.6 3.3 65 84-154 56-121 (141)
49 2l1t_A Uncharacterized protein 40.3 79 0.0027 22.2 5.8 64 83-152 11-74 (109)
50 2p4v_A Transcription elongatio 38.8 17 0.00058 27.5 2.4 65 84-155 84-148 (158)
51 2f23_A Anti-cleavage anti-GREA 37.5 61 0.0021 24.2 5.4 65 84-155 82-149 (156)
52 3hbm_A UDP-sugar hydrolase; PS 36.3 56 0.0019 27.0 5.4 60 160-228 157-217 (282)
53 3ddy_A Lumazine protein, LUMP; 36.2 1.5E+02 0.0051 22.9 10.5 79 55-148 104-182 (186)
54 4he6_A Peptidase family U32; u 34.9 33 0.0011 22.9 3.2 16 137-152 29-44 (89)
55 3bmb_A Regulator of nucleoside 34.5 20 0.00069 26.2 2.1 65 84-154 53-118 (136)
56 2ew0_A Hypothetical protein ac 34.4 21 0.00071 28.0 2.3 69 141-210 66-139 (192)
57 1tll_A Nitric-oxide synthase, 34.0 97 0.0033 29.1 7.2 43 53-96 250-297 (688)
58 2q7x_A UPF0052 protein SP_1565 33.5 30 0.001 29.5 3.3 22 161-182 5-26 (326)
59 3oug_A Aspartate 1-decarboxyla 32.3 1.2E+02 0.0042 21.4 5.7 86 53-154 12-97 (114)
60 1grj_A GREA protein; transcrip 30.6 15 0.00051 27.8 0.8 64 84-153 85-148 (158)
61 1kzl_A Riboflavin synthase; bi 30.3 1.8E+02 0.0061 22.9 7.1 79 56-149 9-87 (208)
62 2p0y_A Hypothetical protein LP 30.2 29 0.001 29.8 2.7 23 160-182 10-32 (341)
63 2brj_A Arabidopsis thaliana ge 27.4 29 0.00098 26.7 1.9 48 119-172 70-121 (188)
64 3fpp_A Macrolide-specific effl 27.2 40 0.0014 28.2 3.1 39 56-96 226-269 (341)
65 3s8f_B Cytochrome C oxidase su 25.0 66 0.0023 24.4 3.6 94 15-112 12-121 (168)
66 2bpo_A CPR, P450R, NADPH-cytoc 24.9 1.3E+02 0.0045 28.1 6.4 39 56-96 261-303 (682)
67 1i8d_A Riboflavin synthase; ri 23.5 2.4E+02 0.0082 22.3 6.8 80 56-150 9-88 (213)
68 2o2z_A Hypothetical protein; s 23.4 40 0.0014 28.7 2.3 21 160-180 4-24 (323)
69 3ek2_A Enoyl-(acyl-carrier-pro 20.4 3.1E+02 0.011 21.3 7.3 24 161-186 14-40 (271)
No 1
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=100.00 E-value=3.1e-40 Score=278.47 Aligned_cols=207 Identities=47% Similarity=0.932 Sum_probs=186.3
Q ss_pred CCCCCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEE
Q 042788 45 SRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVK 124 (258)
Q Consensus 45 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk 124 (258)
.++.+++..|++++|++++.+++++.+++|+.++......|+||||+.|+++ .+|....|+|||+|.+.+.+.++|+||
T Consensus 2 ~~~~l~~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~-~~g~~~~R~ysi~s~~~~~~~~~l~vk 80 (243)
T 2eix_A 2 REPALNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKAT-VDGKEIYRPYTPVSSDDEKGYFDLIIK 80 (243)
T ss_dssp CCCSCCSSSCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEE-ETTEEEEEEECCCSCTTCCSEEEEEEE
T ss_pred CcccCCCCceEEEEEEEEEEeCCCeEEEEEEcCCCCcccCcCCceEEEEEEe-eCCCEEEeeeeecCCCCCCCEEEEEEE
Confidence 4678889999999999999999999999999887544578999999999998 556678999999999877789999999
Q ss_pred EecCCccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCccc
Q 042788 125 MYPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDI 204 (258)
Q Consensus 125 ~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~ 204 (258)
.+++|.+|+||+++++||+|.+.||+|.|.++.+..++++||||||||||++++++++..+.....+++++|++|+.+++
T Consensus 81 ~~~~G~~S~~l~~l~~Gd~v~v~gP~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~~~v~l~~~~r~~~~~ 160 (243)
T 2eix_A 81 VYEKGQMSQYIDHLNPGDFLQVRGPKGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANVNEDDI 160 (243)
T ss_dssp CCTTCHHHHHHHTCCTTCEEEEEEEECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEEEEGGGC
T ss_pred EcCCCCcchHhhcCCCCCEEEEECCeEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCCCCcEEEEEEEcCCHHHh
Confidence 98889999999999999999999999998887655689999999999999999999998763345789999999999999
Q ss_pred ccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCCC
Q 042788 205 LLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTP 253 (258)
Q Consensus 205 ~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~~ 253 (258)
+|.+||+++++++++ +++++++++++++|.+..|+++++.+++.++++
T Consensus 161 ~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~g~~g~v~~~~l~~~~~~~ 208 (243)
T 2eix_A 161 LLRTELDDMAKKYSN-FKVYYVLNNPPAGWTGGVGFVSADMIKQHFSPP 208 (243)
T ss_dssp TTHHHHHHHHHHCTT-EEEEEEEEECCTTCCSEESSCCHHHHHHHSCCT
T ss_pred hHHHHHHHHHHHCCC-eEEEEEeCCCCccccCcCCccCHHHHHHhcCCC
Confidence 999999999998887 999999999888898899999988888887654
No 2
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=100.00 E-value=4.8e-39 Score=275.99 Aligned_cols=211 Identities=45% Similarity=0.801 Sum_probs=184.7
Q ss_pred ccCCCCCCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEE
Q 042788 42 IKKSRGSLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFEL 121 (258)
Q Consensus 42 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~ 121 (258)
....+..+++..|.+++|++++.+++++++++|+.++......|.||||+.|+++ .+|....|+|||+|.+.+.+.++|
T Consensus 4 ~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~-~~g~~~~R~ySi~s~~~~~~~~~l 82 (275)
T 1umk_A 4 STPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSAR-IDGNLVVRPYTPISSDDDKGFVDL 82 (275)
T ss_dssp -CCCBSCCCTTCCEEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEE-ETTEEEEEEECCSSCTTCCSEEEE
T ss_pred cCCCccccCCCccEEEEEEEEEEcCCCeEEEEEEcCCcccccCCCCCcEEEEEEe-eCCcEEEeccccCCccCCCCeEEE
Confidence 3445678899999999999999999999999999876544578999999999987 556678999999999887789999
Q ss_pred EEEEe---------cCCccccccccCCCCCEEEEecccceeeecC----------------CCCceEEEEEcCccHHHHH
Q 042788 122 VVKMY---------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKV----------------GQARAFGMIAGGTGITPMF 176 (258)
Q Consensus 122 ~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~----------------~~~~~vvliagGtGItp~~ 176 (258)
+||.+ ++|.+|+||+++++||+|.++||+|.|.+.. ...++++||||||||||++
T Consensus 83 ~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~ 162 (275)
T 1umk_A 83 VIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPML 162 (275)
T ss_dssp EEECCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHH
T ss_pred EEEEeccCcccccCCCChhHHHHhcCCCCCEEEEEcCccceEecCCccccccccccccccccCCceEEEEecCccHhHHH
Confidence 99997 6799999999999999999999999975421 1357899999999999999
Q ss_pred HHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCCC
Q 042788 177 QLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPTP 253 (258)
Q Consensus 177 sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~~ 253 (258)
++++++..+.....+++|+|++|+.+|++|.+||+++++++|+++++++++++++++|.+..|+++++++++.++++
T Consensus 163 ~~l~~l~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~~l~~~ 239 (275)
T 1umk_A 163 QVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPP 239 (275)
T ss_dssp HHHHHHHTCTTCCCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHHHHSCCG
T ss_pred HHHHHHHhCCCCCcEEEEEEEcCCHHHhhHHHHHHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHHHhcCCC
Confidence 99999987633457899999999999999999999999988866999999999888898999999998888877653
No 3
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=100.00 E-value=4.1e-37 Score=263.19 Aligned_cols=203 Identities=40% Similarity=0.781 Sum_probs=173.9
Q ss_pred CCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEe---
Q 042788 50 DPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMY--- 126 (258)
Q Consensus 50 ~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~--- 126 (258)
++..+.+++|++++.+++++++++|+.++......++||||+.|.++ .+|....|+|||++.+.+.+.++|+||.+
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~-~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~~~ 86 (270)
T 2cnd_A 8 NPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCAT-IEGKLCMRAYTPTSMVDEIGHFDLLVKVYFKN 86 (270)
T ss_dssp ---CCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEE-ETTEEEEEEECCCSCTTCCSEEEEEEECCCSS
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEECCCCccccCCCCCCEEEEEee-eCCcEEEEeeccCCCccCCCEEEEEEEEeccC
Confidence 77888999999999999999999999887544578999999999987 55767899999999987778999999985
Q ss_pred ------cCCccccccccCCCCCEEEEecccce--------eeecC--CCCceEEEEEcCccHHHHHHHHHHHHhCC-CCC
Q 042788 127 ------PKGRMAHHFREMHEGEYLPVKGPKGR--------LKYKV--GQARAFGMIAGGTGITPMFQLTRAILENP-KDK 189 (258)
Q Consensus 127 ------~~G~~S~~L~~l~~Gd~v~v~gP~G~--------f~~~~--~~~~~vvliagGtGItp~~sil~~l~~~~-~~~ 189 (258)
++|.+|+||+++++||+|.+.||+|. |.++. ...++++||||||||||++++++++..+. ...
T Consensus 87 ~~~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~~~~ 166 (270)
T 2cnd_A 87 EHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDH 166 (270)
T ss_dssp CBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTTTCC
T ss_pred cccccCCCCchhhHHhcCCCCCEEEEECCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCCCCC
Confidence 45899999999999999999999997 44432 24589999999999999999999998752 234
Q ss_pred CeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcC---CCCCCCCccccccHHHHhhhCCCC
Q 042788 190 TNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQ---PTEVWNGGIGHVSKEMIQMHCPTP 253 (258)
Q Consensus 190 ~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~---~~~~~~~~~G~i~~~~l~~~~~~~ 253 (258)
.+++|+|++|+.+|++|.+||+++++++|+++++++++++ ++++|.+..|+++++++++.++..
T Consensus 167 ~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~~l~~~ 233 (270)
T 2cnd_A 167 TEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEG 233 (270)
T ss_dssp CEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHHHSCCC
T ss_pred cEEEEEEEcCCHHHcchHHHHHHHHHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHHhcCCC
Confidence 7899999999999999999999999998877999999987 456788889999998888877654
No 4
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=100.00 E-value=1.8e-36 Score=256.53 Aligned_cols=196 Identities=24% Similarity=0.393 Sum_probs=171.4
Q ss_pred CCCCCCCcEEEEEEEEEEeCCCEeEEEEEC-C-CCC-ccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEE
Q 042788 47 GSLDPENFKEFKLTKRTPISHNTAKFRFAL-P-KST-SILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVV 123 (258)
Q Consensus 47 ~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~-~-~~~-~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~V 123 (258)
..+....+.+++|++++.+++++++++|+. + +.. ....|+||||+.|+++ +....|+|||++.+.+.+.++|+|
T Consensus 3 ~~~~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~---~~~~~R~ySi~s~~~~~~~l~i~v 79 (250)
T 1tvc_A 3 ISFGEVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIP---GTDVSRSYSPANLPNPEGRLEFLI 79 (250)
T ss_dssp CCSCCSSEEEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTT---SCSSSEEECCBCCSSSSCCEEEEE
T ss_pred eecCCcceEEEEEEEEEEcCCCeEEEEEEecCCCCcccccCcCCCcEEEEEeC---CCccccccccCCCCCCCCeEEEEE
Confidence 445556778999999999999999999998 7 531 1378999999999876 335689999999998678999999
Q ss_pred EEecCCccccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCc
Q 042788 124 KMYPKGRMAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVG 202 (258)
Q Consensus 124 k~~~~G~~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~ 202 (258)
|.+++|.+|+||+ ++++||+|.++||+|.|.+..+..++++||||||||||++++++++..++ ...+++|+|++|+.+
T Consensus 80 k~~~~G~~s~~l~~~l~~Gd~v~v~gP~G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~-~~~~v~l~~~~r~~~ 158 (250)
T 1tvc_A 80 RVLPEGRFSDYLRNDARVGQVLSVKGPLGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWT-APNETRIYFGVNTEP 158 (250)
T ss_dssp CCCTTSSSHHHHHHHSSSSSEEEEEEEECCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHT-CCSCEEEEEECSSST
T ss_pred EECCCCCchHHHHhcCCCCCEEEEEcCccccccCccCCceEEEEEeccCHHHHHHHHHHHHhcC-CCceEEEEEEeCCHH
Confidence 9988899999995 99999999999999998876555689999999999999999999998763 346899999999999
Q ss_pred ccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHh
Q 042788 203 DILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ 247 (258)
Q Consensus 203 d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~ 247 (258)
+++|.+||+++++++++ +++++++++++++|.+..|++++.+.+
T Consensus 159 ~~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~g~~g~v~~~l~~ 202 (250)
T 1tvc_A 159 ELFYIDELKSLERSMRN-LTVKACVWHPSGDWEGEQGSPIDALRE 202 (250)
T ss_dssp TCCCHHHHHHHHHHSSS-CEEEECCSSCSSCCSSSSSSSSHHHHH
T ss_pred HhhhHHHHHHHHHhCCC-eEEEEEeccCCCCcCCccceehHHHHh
Confidence 99999999999988888 999999999888888899999987553
No 5
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=100.00 E-value=3.1e-35 Score=254.04 Aligned_cols=200 Identities=18% Similarity=0.321 Sum_probs=170.4
Q ss_pred CCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecC----------------------------C
Q 042788 48 SLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDS----------------------------E 99 (258)
Q Consensus 48 ~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~----------------------------~ 99 (258)
.+.+ ....++|++++.+++++++++|+.++.. .+.|+||||+.|.++.. .
T Consensus 4 ~~~~-~~~~~~V~~~~~~t~~~~~l~l~~~~~~-~~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 81 (290)
T 2r6h_A 4 VFGV-KEWECEVLSNKNVSTFIKEFVVKLPEGE-TMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKN 81 (290)
T ss_dssp --CC-CEEEEEEEEEEESSSSEEEEEEECSTTC-CCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEE
T ss_pred cccc-eEEEEEEEEeeecCCCeEEEEEEcCCCC-ccccCCCceEEEEcccccccccccccchhhcccccccccccccccC
Confidence 3444 4568999999999999999999988643 35799999999998721 2
Q ss_pred CCeeeeeccccccCCCCCEEEEEEEE---------------ecCCccccccccCCCCCEEEEecccceeeecCCCCceEE
Q 042788 100 GNEVIRPYTPITLDSDIGYFELVVKM---------------YPKGRMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFG 164 (258)
Q Consensus 100 g~~~~R~ySi~s~~~~~~~l~~~Vk~---------------~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vv 164 (258)
+....|+|||++.+.+.+.++|+||. ++.|.+|+||+++++||+|.+.||+|.|.++ ...++++
T Consensus 82 ~~~~~R~ySi~s~~~~~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd~v~v~gP~G~f~~~-~~~~~~v 160 (290)
T 2r6h_A 82 EEETVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYGDFHIQ-DTDAEML 160 (290)
T ss_dssp CSCEEEEEECCSCTTCCSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTCEEEEEEEECCCCCC-SSSCEEE
T ss_pred CCCcceeeeccCCCCCCCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCCEEEEEecccCCcCC-CCCCeEE
Confidence 34678999999999877899999997 3578999999999999999999999998765 3568999
Q ss_pred EEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCC--CCCCCCcccccc
Q 042788 165 MIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQP--TEVWNGGIGHVS 242 (258)
Q Consensus 165 liagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~--~~~~~~~~G~i~ 242 (258)
||||||||||+++++++++.+.....+++|+|++|+.++++|.+||+++++++++ ++++++++++ +++|.+..|+++
T Consensus 161 liagGtGitP~~s~l~~~~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~g~~g~v~ 239 (290)
T 2r6h_A 161 YIGGGAGMAPLRAQILHLFRTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPN-FKFHIALSDPQPEDNWTGYVGFIH 239 (290)
T ss_dssp EEEEGGGHHHHHHHHHHHHHTSCCCSCEEEEEEESSGGGCCSHHHHHHHHHHCTT-EEEEEEESSCCGGGCCCSCBSCHH
T ss_pred EEECccCHHHHHHHHHHHHHhcCCCCcEEEEEEcCCHHHHHHHHHHHHHHHhCCC-eEEEEEEccCCcccCCCCeeEecC
Confidence 9999999999999999888764345789999999999999999999999988888 9999999976 356888899999
Q ss_pred HHHHhhhCC
Q 042788 243 KEMIQMHCP 251 (258)
Q Consensus 243 ~~~l~~~~~ 251 (258)
+.++++.+.
T Consensus 240 ~~~~~~~l~ 248 (290)
T 2r6h_A 240 QVIYDNYLK 248 (290)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHhHHh
Confidence 987777654
No 6
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=100.00 E-value=6.8e-36 Score=250.20 Aligned_cols=186 Identities=19% Similarity=0.311 Sum_probs=160.7
Q ss_pred EEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccc
Q 042788 55 KEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHH 134 (258)
Q Consensus 55 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~ 134 (258)
.+++|++++.+++++++++|+.++. ..|+||||+.|+++ + ...|+|||++.|.+++.++|.||.+++|.+|.+
T Consensus 3 ~~~~V~~~~~~~~~~~~l~l~~~~~---~~~~pGq~v~l~~~---~-~~~R~ySi~s~~~~~~~l~l~i~~~~~G~~s~~ 75 (232)
T 1qfj_A 3 LSCKVTSVEAITDTVYRVRIVPDAA---FSFRAGQYLMVVMD---E-RDKRPFSMASTPDEKGFIELHIGASEINLYAKA 75 (232)
T ss_dssp EEEEEEEEEESSSSCEEEEEEESSC---CCCCTTCEEEEESS---S-SCEEEEECCSCTTSTTCEEEEEC------CCHH
T ss_pred eEEEEEEEEecCCCEEEEEEecCCC---CCcCCCCEEEEECC---C-CceeeeecCCCCCCCCcEEEEEEEccCCchhHH
Confidence 5789999999999999999998653 68999999999987 2 468999999999877899999999888887776
Q ss_pred -cccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHH
Q 042788 135 -FREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSF 213 (258)
Q Consensus 135 -L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l 213 (258)
++++++||+|.+.||+|.|.+..+..++++||||||||||++++++++..++ ...+++++|++|+.++++|.+||+++
T Consensus 76 ~~~~l~~Gd~v~v~gP~G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l 154 (232)
T 1qfj_A 76 VMDRILKDHQIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALARN-PNRDITIYWGGREEQHLYDLCELEAL 154 (232)
T ss_dssp HHHHHHHHSEEEEEEEECSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHC-TTCCEEEEEEESSGGGCTTHHHHHHH
T ss_pred HHHhCCCCCEEEEeCCccceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcC-CCCcEEEEEeeCCHHHhhhHHHHHHH
Confidence 5789999999999999998876655689999999999999999999998763 44789999999999999999999999
Q ss_pred HhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhh
Q 042788 214 ATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMH 249 (258)
Q Consensus 214 ~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~ 249 (258)
++++++ +++++++++++++|.+..|++++.++++.
T Consensus 155 ~~~~~~-~~~~~~~s~~~~~~~g~~g~v~~~~~~~~ 189 (232)
T 1qfj_A 155 SLKHPG-LQVVPVVEQPEAGWRGRTGTVLTAVLQDH 189 (232)
T ss_dssp HHHCTT-EEEEEEESSCCTTCCSEESCHHHHHHHHC
T ss_pred HHHCCC-eEEEEEEcCCCCCcCCceeeHHHHHHHhc
Confidence 998888 99999999998889899999998776654
No 7
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=100.00 E-value=7.2e-35 Score=246.28 Aligned_cols=187 Identities=17% Similarity=0.224 Sum_probs=161.2
Q ss_pred CcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccc
Q 042788 53 NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA 132 (258)
Q Consensus 53 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S 132 (258)
.|.+++|++++.+++++++++|+ ++ ...|+||||+.|+++ .+|....|+|||++.+.+ +.++|+||.+++|.+|
T Consensus 3 ~~~~~~V~~~~~~~~~~~~l~l~-~~---~~~~~pGq~v~l~~~-~~g~~~~R~ySi~s~~~~-~~l~~~v~~~~~G~~s 76 (248)
T 1fdr_A 3 DWVTGKVTKVQNWTDALFSLTVH-AP---VLPFTAGQFTKLGLE-IDGERVQRAYSYVNSPDN-PDLEFYLVTVPDGKLS 76 (248)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEE-CC---CCCCCTTCEEEEEEC-C---CEEEEEECCSCTTC-SSEEEEEECCTTCSSH
T ss_pred ceEEEEEEEEEEcCCCEEEEEEe-CC---CCCcCCCCcEEEEcc-CCCCeeeeeecccCCCCC-CcEEEEEEEeCCCchh
Confidence 57899999999999999999997 43 268999999999998 456678999999999876 7899999998889999
Q ss_pred cccccCCCCCEEEEe-cccceeeecCC-CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHH
Q 042788 133 HHFREMHEGEYLPVK-GPKGRLKYKVG-QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDEL 210 (258)
Q Consensus 133 ~~L~~l~~Gd~v~v~-gP~G~f~~~~~-~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL 210 (258)
+||+++++||+|.+. ||+|.|.++.. ..++++||||||||||++++++++...+ ...+++|+|++|+.++++|.+||
T Consensus 77 ~~l~~l~~Gd~v~v~~gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~el 155 (248)
T 1fdr_A 77 PRLAALKPGDEVQVVSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLD-RFKNLVLVHAARYAADLSYLPLM 155 (248)
T ss_dssp HHHHTCCTTCEEEEESSCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCT-TCSEEEEEEEESSGGGCTTHHHH
T ss_pred hHHHhCCCcCEEEEecCCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhC-CCCcEEEEEEcCCHHHhhHHHHH
Confidence 999999999999999 99999887654 2689999999999999999999987653 34789999999999999999999
Q ss_pred HHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHh
Q 042788 211 DSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ 247 (258)
Q Consensus 211 ~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~ 247 (258)
+++++++|+++++++++++++. +.+..|++++.+.+
T Consensus 156 ~~l~~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~l~~ 191 (248)
T 1fdr_A 156 QELEKRYEGKLRIQTVVSRETA-AGSLTGRIPALIES 191 (248)
T ss_dssp HHHHHHTTTSEEEEEEESSSCC-TTEEESCHHHHHHT
T ss_pred HHHHHhCcCcEEEEEEEecCCC-CCCcceeeChHHHh
Confidence 9999888766999999988653 33468999987654
No 8
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=4.9e-35 Score=246.50 Aligned_cols=187 Identities=18% Similarity=0.257 Sum_probs=163.7
Q ss_pred CCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCe--eeeeccccccCCCCCEEEEEEEEe---
Q 042788 52 ENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNE--VIRPYTPITLDSDIGYFELVVKMY--- 126 (258)
Q Consensus 52 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~--~~R~ySi~s~~~~~~~l~~~Vk~~--- 126 (258)
+.|++++|++++.+++++++++|+.++......|+||||+.|+++ .++.. .+|+|||++.|.+ +.++|.||.+
T Consensus 1 ~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~-~~~~~~~~~R~ySi~s~~~~-~~~~i~vk~~~~~ 78 (243)
T 4eh1_A 1 RDGRTFVVREKQVESAYVTSFVLVPADGGAVLDYQPGQYIGIEVT-PEGSDYREIRQYSLSHASNG-REYRISVKREGVG 78 (243)
T ss_dssp CCCEEEEEEEEEECSSSEEEEEEEESSCSCCCCCCTTCEEEEEEC-CSSCSSCEEEEEEBCSCCCS-SCEEEEEECTTTT
T ss_pred CCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCcCCCCEEEEEEe-cCCCccccceeeEeccCCCC-CeEEEEEEEeecC
Confidence 368999999999999999999999887644578999999999998 44433 5799999998865 7899999998
Q ss_pred --cCCccccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcc
Q 042788 127 --PKGRMAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGD 203 (258)
Q Consensus 127 --~~G~~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d 203 (258)
++|.+|+||+ ++++||+|.+.||+|.|.++ ...++++||||||||||++++++++..++. .. ++++|++|+.++
T Consensus 79 ~~~~G~~S~~l~~~l~~G~~v~v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~~-~~-v~l~~~~r~~~~ 155 (243)
T 4eh1_A 79 SDNPGLVSHYLHNNVKVGDSVKLYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQNK-SG-VTYLYACNSAKE 155 (243)
T ss_dssp SSSCCHHHHHHHHHCCTTCEEEEEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTTC-CS-EEEEEEESSGGG
T ss_pred CCCCCeehhHHHhcCCCCCEEEEEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcCC-Ce-EEEEEEeCChhh
Confidence 7799999996 79999999999999998876 567899999999999999999999998742 23 999999999999
Q ss_pred cccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHH
Q 042788 204 ILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMI 246 (258)
Q Consensus 204 ~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l 246 (258)
++|.+||+++++++ + ++++++++++.++|. ..|+++...+
T Consensus 156 ~~~~~el~~l~~~~-~-~~~~~~~s~~~~~~~-~~g~~~~~~~ 195 (243)
T 4eh1_A 156 HTFAQETAQLIAQQ-G-WMQQVWYRDESADDV-LQGEMQLAEL 195 (243)
T ss_dssp CTTHHHHHHHHHHH-T-CEEEEEESSCCCTTC-EESSCCCTTS
T ss_pred hhHHHHHHHHHHhC-C-eEEEEEEccCCCccc-ccCCccHHHe
Confidence 99999999998877 5 999999998776655 7889988655
No 9
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=100.00 E-value=5.9e-34 Score=256.96 Aligned_cols=194 Identities=18% Similarity=0.274 Sum_probs=169.0
Q ss_pred CCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCC--eeeeeccccccCCCCCEEEEEEEEec
Q 042788 50 DPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGN--EVIRPYTPITLDSDIGYFELVVKMYP 127 (258)
Q Consensus 50 ~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~--~~~R~ySi~s~~~~~~~l~~~Vk~~~ 127 (258)
.|..|++++|++++.+++++++++|+.++......|+||||+.|+++ .++. ...|+|||++.|. ++.++|.||+++
T Consensus 150 ~w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~-~~~~~~~~~R~YSi~s~p~-~~~~~i~Vk~~~ 227 (403)
T 1cqx_A 150 GWKGWRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAID-VPALGLQQIRQYSLSDMPN-GRTYRISVKREG 227 (403)
T ss_dssp CCSSCEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEE-ETTTTEEEEEEEECCSCCC-SSCEEEEEECCC
T ss_pred CCCcceeEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEe-cCCCCcceeecceecCCCC-CCeEEEEEEECC
Confidence 46788999999999999999999999876543468999999999998 3342 5789999999886 478999999986
Q ss_pred -----CCccccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCC
Q 042788 128 -----KGRMAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTV 201 (258)
Q Consensus 128 -----~G~~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~ 201 (258)
+|.+|+||+ ++++||+|.++||+|.|.++.+..++++||||||||||+++|++++.. ...++++++|++|+.
T Consensus 228 ~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~--~~~~~v~l~~~~r~~ 305 (403)
T 1cqx_A 228 GGPQPPGYVSNLLHDHVNVGDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ--APPRQVVFVHGARNS 305 (403)
T ss_dssp BTTBCCCHHHHHHHHHCCTTCEEEECCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC--SSCCCEEEEEEESCS
T ss_pred CCCCCCCeehHHHhhCCCCCCEEEEecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh--CCCCcEEEEEEeCCh
Confidence 699999998 699999999999999998865556899999999999999999999987 234789999999999
Q ss_pred cccccHHHHHHHHhhCCCCeEEEEEEcCCCCCC-----CCccccccHHHHhh
Q 042788 202 GDILLKDELDSFATNSPNRFKVYYVLSQPTEVW-----NGGIGHVSKEMIQM 248 (258)
Q Consensus 202 ~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~-----~~~~G~i~~~~l~~ 248 (258)
++++|.+||+++++++|+ ++++++++++.+.| .+..|+++.+.+++
T Consensus 306 ~~~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~G~i~~~~l~~ 356 (403)
T 1cqx_A 306 AVHAMRDRLREAAKTYEN-LDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEK 356 (403)
T ss_dssp SSCHHHHHHHHHHHHCTT-EEEEEEESSCCTTCCBTTTBSEESSCCGGGSHH
T ss_pred hhCcHHHHHHHHHHhCCC-cEEEEEECCCCcccccccccCcCCCcCHHHHhh
Confidence 999999999999999998 99999999876655 34679999876665
No 10
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=100.00 E-value=6.3e-35 Score=262.75 Aligned_cols=195 Identities=19% Similarity=0.265 Sum_probs=170.2
Q ss_pred CCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCC--eeeeeccccccCCCCCEEEEEEEEec
Q 042788 50 DPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGN--EVIRPYTPITLDSDIGYFELVVKMYP 127 (258)
Q Consensus 50 ~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~--~~~R~ySi~s~~~~~~~l~~~Vk~~~ 127 (258)
.|..|++++|++++.+++++++++|+.++......|+||||+.|+++ .++. ..+|+|||++.|. ++.++|.||+++
T Consensus 148 ~w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~-~~~~~~~~~R~YSi~s~p~-~~~~~i~Vk~~~ 225 (396)
T 1gvh_A 148 GWEGTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLK-PEGFPHQEIRQYSLTRKPD-GKGYRIAVKREE 225 (396)
T ss_dssp CCSSEEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEC-CTTCSSCEEEEEECCSCCC-SSCEEEEEECCT
T ss_pred CCCCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCeEEEEec-CCCCccceeecceeccCCC-CCeEEEEEEEcC
Confidence 35788999999999999999999999887543468999999999998 5452 5789999999987 478999999988
Q ss_pred CCcccccccc-CCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCccccc
Q 042788 128 KGRMAHHFRE-MHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILL 206 (258)
Q Consensus 128 ~G~~S~~L~~-l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~ 206 (258)
+|.+|+||++ +++||+|.++||+|.|.++.+..++++||||||||||+++|++++..++ ..++++++|++|+.++++|
T Consensus 226 ~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~-~~~~v~l~~~~r~~~~~~~ 304 (396)
T 1gvh_A 226 GGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAG-HTAQVNWFHAAENGDVHAF 304 (396)
T ss_dssp TCHHHHHHHHTCCTTCEEEEEEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHT-CCSCEEEEEEESCTTTCCS
T ss_pred CCcchHHHHhcCCCCCEEEEEcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcC-CCCcEEEEEEeCCHHHhhh
Confidence 8999999985 9999999999999999886555689999999999999999999998763 4578999999999999999
Q ss_pred HHHHHHHHhhCCCCeEEEEEEcCCCCCC-----CCccccccHHHHhh
Q 042788 207 KDELDSFATNSPNRFKVYYVLSQPTEVW-----NGGIGHVSKEMIQM 248 (258)
Q Consensus 207 ~~eL~~l~~~~~~~~~v~~~~s~~~~~~-----~~~~G~i~~~~l~~ 248 (258)
.+||+++++++|+ ++++++++++.+.| .+..|+++.+.+++
T Consensus 305 ~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~G~~~~~~l~~ 350 (396)
T 1gvh_A 305 ADEVKELGQSLPR-FTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEG 350 (396)
T ss_dssp HHHHHHHHHTSSS-EEEEEEESSCCHHHHHHTCCSEESSCCGGGSSS
T ss_pred HHHHHHHHHHCCC-eEEEEEECCCCccccccCccCccCcCCHHHHhh
Confidence 9999999999998 99999999876433 45679999876665
No 11
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=100.00 E-value=1.8e-34 Score=251.92 Aligned_cols=197 Identities=17% Similarity=0.216 Sum_probs=162.2
Q ss_pred CCCCCCCcEEEEEEEEEEeC-----CCEeEEEEECCCCCccCCCCCCcEEEEEEecCC----CC-eeeeeccccccCCC-
Q 042788 47 GSLDPENFKEFKLTKRTPIS-----HNTAKFRFALPKSTSILGLPVGQHILCRGKDSE----GN-EVIRPYTPITLDSD- 115 (258)
Q Consensus 47 ~~~~~~~~~~~~v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~----g~-~~~R~ySi~s~~~~- 115 (258)
....+.....++|++++.++ +++++++|+.+.. +.|+||||+.|+++... |. ..+|+|||+|.|.+
T Consensus 21 ~~~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~---~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~ 97 (311)
T 3lo8_A 21 NTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGN---VPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGD 97 (311)
T ss_dssp CSBBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTTS---SCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTT
T ss_pred cccCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCCC---CcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCccc
Confidence 34556778899999999999 9999999998864 78999999999988321 22 36899999999854
Q ss_pred ---CCEEEEEEEEe-------------cCCccccccccCCCCCEEEEecccceeeecC--CCCceEEEEEcCccHHHHHH
Q 042788 116 ---IGYFELVVKMY-------------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKV--GQARAFGMIAGGTGITPMFQ 177 (258)
Q Consensus 116 ---~~~l~~~Vk~~-------------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~--~~~~~vvliagGtGItp~~s 177 (258)
.+.++|+||.+ ++|.+|+||+++++||+|.+.||+|.|...+ +..++++||||||||||+++
T Consensus 98 ~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s 177 (311)
T 3lo8_A 98 NFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRG 177 (311)
T ss_dssp TTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTCEEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHH
T ss_pred CCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcCEEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHH
Confidence 47999999986 6799999999999999999999999976544 35689999999999999999
Q ss_pred HHHHHHhCCCC----CCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHH
Q 042788 178 LTRAILENPKD----KTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMI 246 (258)
Q Consensus 178 il~~l~~~~~~----~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l 246 (258)
+++++..++.+ ..+++|+|++|+.++++|.+||+++++++++++++++++++++++|.+..|++++.+.
T Consensus 178 ~l~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~ 250 (311)
T 3lo8_A 178 YLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIE 250 (311)
T ss_dssp HHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEETTTC-------CCHHHHHH
T ss_pred HHHHHHHhccccccCCCCEEEEEecCChHHhhHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCcceehHHHH
Confidence 99999875321 2589999999999999999999999999885599999999998888888888877543
No 12
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=100.00 E-value=2.6e-34 Score=250.89 Aligned_cols=196 Identities=20% Similarity=0.272 Sum_probs=166.4
Q ss_pred CCCCCCcEEEEEEEEEEeCCC-----EeEEEEECCCCCccCCCCCCcEEEEEEecC--CCCe-eeeeccccccCC----C
Q 042788 48 SLDPENFKEFKLTKRTPISHN-----TAKFRFALPKSTSILGLPVGQHILCRGKDS--EGNE-VIRPYTPITLDS----D 115 (258)
Q Consensus 48 ~~~~~~~~~~~v~~~~~~~~~-----~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~g~~-~~R~ySi~s~~~----~ 115 (258)
...+.....++|++++.++++ +++++|+.+.. +.|.||||+.|+++.. +|.. .+|+|||+|.|. +
T Consensus 27 ~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~ 103 (310)
T 3vo2_A 27 KYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEGE---IPYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGD 103 (310)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC---CCCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTS
T ss_pred eecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCCCC---CcccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCC
Confidence 344556679999999999998 99999997653 6799999999998721 2333 589999999985 4
Q ss_pred CCEEEEEEEEec---------CCccccccccCCCCCEEEEecccceeee-cCCCCceEEEEEcCccHHHHHHHHHHHHhC
Q 042788 116 IGYFELVVKMYP---------KGRMAHHFREMHEGEYLPVKGPKGRLKY-KVGQARAFGMIAGGTGITPMFQLTRAILEN 185 (258)
Q Consensus 116 ~~~l~~~Vk~~~---------~G~~S~~L~~l~~Gd~v~v~gP~G~f~~-~~~~~~~vvliagGtGItp~~sil~~l~~~ 185 (258)
++.++|+||+++ +|.+|+||+++++||+|.+.||+|.|.. +.+..++++||||||||||++++++++..+
T Consensus 104 ~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~ 183 (310)
T 3vo2_A 104 SKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGADVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLE 183 (310)
T ss_dssp SSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSS
T ss_pred CCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCCEEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHh
Confidence 689999999863 6999999999999999999999999553 434568999999999999999999999865
Q ss_pred CCC----CCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHH
Q 042788 186 PKD----KTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMI 246 (258)
Q Consensus 186 ~~~----~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l 246 (258)
... ..+++|+|++|+.++++|.+||+++++++|+++++++++|+++++|.+..|++++.+.
T Consensus 184 ~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~ 248 (310)
T 3vo2_A 184 EHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAGEKMYIQTRMA 248 (310)
T ss_dssp CCTTCCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHHHH
T ss_pred hcccccCCCcEEEEEEecChhhcccHHHHHHHHHhCCCCEEEEEEECCCCCCCCCcceehHHHHH
Confidence 322 2689999999999999999999999999985599999999998888888888887544
No 13
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=100.00 E-value=3.1e-33 Score=251.99 Aligned_cols=191 Identities=15% Similarity=0.284 Sum_probs=168.0
Q ss_pred CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccC----CCCCCcEEEEEEecCC--C--CeeeeeccccccCCCCCEEEEE
Q 042788 51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSIL----GLPVGQHILCRGKDSE--G--NEVIRPYTPITLDSDIGYFELV 122 (258)
Q Consensus 51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~----~~~pGQ~v~l~~~~~~--g--~~~~R~ySi~s~~~~~~~l~~~ 122 (258)
+..|++++|++++.+++++++++|+.++..... .|+||||+.|+++ .+ + ...+|+|||++.|.+ +.++|.
T Consensus 146 w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~-~~~~~~~~~~~R~ySi~s~p~~-~~~~i~ 223 (399)
T 4g1v_A 146 WPGWKPFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTH-PIRQENQYDALRHYSLCSASTK-NGLRFA 223 (399)
T ss_dssp SCSCEEEEEEEEEEEETTEEEEEEEECTTSCCCGGGCCCCTTCEEEEEEC-CCSTTCCSCEEEEEEBSCSCCT-TCEEEE
T ss_pred CCcceEEEEEEEEEcCCCeEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEe-CCCCCCccceeeeecccCCCCC-CeEEEE
Confidence 778999999999999999999999988754333 8999999999986 33 3 257899999999865 789999
Q ss_pred EEEe------cCCccccccc-cCCCCCEEEEecccceeeecCC----CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCe
Q 042788 123 VKMY------PKGRMAHHFR-EMHEGEYLPVKGPKGRLKYKVG----QARAFGMIAGGTGITPMFQLTRAILENPKDKTN 191 (258)
Q Consensus 123 Vk~~------~~G~~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~----~~~~vvliagGtGItp~~sil~~l~~~~~~~~~ 191 (258)
||++ ++|.+|+||+ ++++||+|.++||+|.|.++.+ ..++++||||||||||+++|++++..++ ..++
T Consensus 224 Vk~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~-~~~~ 302 (399)
T 4g1v_A 224 VKMEAARENFPAGLVSEYLHKDAKVGDEIKLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCN-PNRP 302 (399)
T ss_dssp EECCCCBTTBCCCHHHHHHHHTCCTTCEEEEEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHC-TTSC
T ss_pred EEeccCCCCCCCCEehhHHHhCCCCCCEEEEEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcC-CCCC
Confidence 9994 6899999996 9999999999999999988765 5789999999999999999999998864 3478
Q ss_pred EEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCC
Q 042788 192 VHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT 252 (258)
Q Consensus 192 v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~ 252 (258)
++++|++|+.++++|.++|+++++++|+ ++++++++++. |+++.+.+.+.+++
T Consensus 303 v~l~~~~r~~~~~~~~~el~~l~~~~~~-~~~~~~~s~~~-------g~~~~~~l~~~~~~ 355 (399)
T 4g1v_A 303 IYWIQSSYDEKTQAFKKHVDELLAECAN-VDKIIVHTDTE-------PLINAAFLKEKSPA 355 (399)
T ss_dssp EEEEEEESSSTTSTTHHHHHHHHTTCSS-EEEEEEETTTS-------CCCCHHHHHHHSCS
T ss_pred EEEEEecCCHHHhhhHHHHHHHHHhCCC-cEEEEEEeCCC-------CcccHHHHHhhCCC
Confidence 9999999999999999999999999998 99999998753 79998888877764
No 14
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=100.00 E-value=3.3e-34 Score=252.92 Aligned_cols=192 Identities=20% Similarity=0.307 Sum_probs=166.8
Q ss_pred CCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcc
Q 042788 52 ENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRM 131 (258)
Q Consensus 52 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~ 131 (258)
..+.+++|++++.+++++++++|+.++......|.||||+.|+++ +...+|+|||++.|. .+.++|+||.+++|.+
T Consensus 106 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~---~~~~~R~ySi~s~~~-~~~l~~~vk~~~~G~~ 181 (338)
T 1krh_A 106 IHHFEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLP---GTTETRSYSFSSQPG-NRLTGFVVRNVPQGKM 181 (338)
T ss_dssp CEEEEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECT---TSSCEEEEECCSCTT-CSEEEEEEECCTTCHH
T ss_pred ceEEEEEEEEEEEcCCCEEEEEEEeCCCCCCCCcCCCCeEEEEcC---CCCccccccccCCCC-CCeEEEEEEEcCCCCc
Confidence 356789999999999999999999887422478999999999977 334689999999987 6899999999888999
Q ss_pred cccc-ccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHH
Q 042788 132 AHHF-REMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDEL 210 (258)
Q Consensus 132 S~~L-~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL 210 (258)
|+|| .++++||+|.++||+|.|.++.+. ++++||||||||||++++++++..++ ...+++|+|++|+.+|++|.+||
T Consensus 182 S~~L~~~l~~Gd~v~v~gP~G~f~~~~~~-~~~vliagGtGiaP~~s~l~~l~~~~-~~~~v~l~~~~r~~~d~~~~~el 259 (338)
T 1krh_A 182 SEYLSVQAKAGDKMSFTGPFGSFYLRDVK-RPVLMLAGGTGIAPFLSMLQVLEQKG-SEHPVRLVFGVTQDCDLVALEQL 259 (338)
T ss_dssp HHHHHTTCCTTCEEEEEEEECSCSCCCCS-SCEEEEEEGGGHHHHHHHHHHHHHHC-CSSCEEEEEEESSGGGCCCHHHH
T ss_pred hhhHhhccCCCCEEEEECCccceEeCCCC-ceEEEEEccccHhHHHHHHHHHHHcC-CCCeEEEEEEeCCHHHhhhHHHH
Confidence 9999 589999999999999998876553 89999999999999999999998864 34689999999999999999999
Q ss_pred HHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCC
Q 042788 211 DSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCP 251 (258)
Q Consensus 211 ~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~ 251 (258)
+++++++++ ++++++++++++.|. ..|++++.+.++.++
T Consensus 260 ~~l~~~~~~-~~~~~~~s~~~~~~~-~~g~v~~~l~~~~~~ 298 (338)
T 1krh_A 260 DALQQKLPW-FEYRTVVAHAESQHE-RKGYVTGHIEYDWLN 298 (338)
T ss_dssp HHHHHHCTT-EEEEEEETTCCSSSS-EESCSGGGCCGGGGG
T ss_pred HHHHHhCCC-eEEEEEEecCCCCCC-ccCccCHHHHHhhcc
Confidence 999998888 999999998877665 689998865544443
No 15
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=100.00 E-value=9.3e-34 Score=247.97 Aligned_cols=193 Identities=16% Similarity=0.225 Sum_probs=162.8
Q ss_pred CCCCcEEEEEEEEEEeC-----CCEeEEEEECCCCCccCCCCCCcEEEEEEecC--------------------------
Q 042788 50 DPENFKEFKLTKRTPIS-----HNTAKFRFALPKSTSILGLPVGQHILCRGKDS-------------------------- 98 (258)
Q Consensus 50 ~~~~~~~~~v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~-------------------------- 98 (258)
.+.....++|++++.++ ++++.++|+.+.. +.|.||||+.|..|..
T Consensus 11 ~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 87 (316)
T 3jqq_A 11 TVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNGL---FKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTNHTNHN 87 (316)
T ss_dssp CSSSCEEEEEEEEEECSCTTCSCCEEEEEEECTTC---CCCCTTCEEEECTTCC--------------------------
T ss_pred cCCCCEEEEEEeeEEccCCCCCCceEEEEEeCCCC---cceecCcEeEEECCCccccccccccccccccccccccccccc
Confidence 34555689999999998 8999999998654 8999999999976521
Q ss_pred -------CCCeeeeeccccccCCCCCEEEEEEEEe------------cCCccccccccCCCCCEEEEecccceeeecCC-
Q 042788 99 -------EGNEVIRPYTPITLDSDIGYFELVVKMY------------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKVG- 158 (258)
Q Consensus 99 -------~g~~~~R~ySi~s~~~~~~~l~~~Vk~~------------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~- 158 (258)
+|...+|+|||+|.|.+ +.++|+||+. ++|.+|+||+++++||+|.++||+|.|.++.+
T Consensus 88 ~~~~~~~~g~~~~R~ySIaS~p~~-~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~l~~~~ 166 (316)
T 3jqq_A 88 NIALSHIKKQRCARLYSISSSNNM-ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGYFNLPNDA 166 (316)
T ss_dssp ---------CCCCEEEEBCSCTTS-SSEEEEEECCBC---------CCBCHHHHHHHTCCTTCEEEEEEEECCCCCCTTH
T ss_pred ccccccCCCcccceeeecccCCCC-CeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCCEEEEEecCCceEcCCcc
Confidence 13457999999999876 7899999974 56999999999999999999999999988755
Q ss_pred --CCceEEEEEcCccHHHHHHHHHHHHhCCC---------CCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEE
Q 042788 159 --QARAFGMIAGGTGITPMFQLTRAILENPK---------DKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVL 227 (258)
Q Consensus 159 --~~~~vvliagGtGItp~~sil~~l~~~~~---------~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~ 227 (258)
..+++|||||||||||+++|++++...+. ...+++|+|++|+.++++|.+||+++++++|+++++++++
T Consensus 167 ~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~~~~~~ 246 (316)
T 3jqq_A 167 IQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNINIHYVF 246 (316)
T ss_dssp HHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEE
T ss_pred cCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHHHHHHHHhCCCcEEEEEEE
Confidence 26899999999999999999999987631 2468999999999999999999999999988559999999
Q ss_pred cCCCCCCCCccccccHHHHh
Q 042788 228 SQPTEVWNGGIGHVSKEMIQ 247 (258)
Q Consensus 228 s~~~~~~~~~~G~i~~~~l~ 247 (258)
+++ ++|.+..|++++.+.+
T Consensus 247 s~~-~~~~g~~g~V~~~l~~ 265 (316)
T 3jqq_A 247 SYK-QNSDATSFYVQDEIYK 265 (316)
T ss_dssp GGG-CC---CBCCHHHHHHH
T ss_pred CCC-cccCCCccchhHHHHH
Confidence 987 5677889999887654
No 16
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=100.00 E-value=3.4e-33 Score=239.40 Aligned_cols=186 Identities=19% Similarity=0.296 Sum_probs=160.3
Q ss_pred cEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccc
Q 042788 54 FKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAH 133 (258)
Q Consensus 54 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~ 133 (258)
+.+++|++++.+++++++++|+.++. ..|+||||+.|+++..+|....|+|||++.+.+ +.++|+|+.+++|.+|+
T Consensus 16 ~~~~~V~~~~~~~~~~~~l~l~~~~~---~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~-~~~~l~v~~~~~G~~s~ 91 (272)
T 2bgi_A 16 PDAQTVTSVRHWTDTLFSFRVTRPQT---LRFRSGEFVMIGLLDDNGKPIMRAYSIASPAWD-EELEFYSIKVPDGPLTS 91 (272)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCTT---CCCCTTCEEEEEEECTTSCEEEEEEECCSCTTC-SEEEEEEECCTTCTTHH
T ss_pred eEEEEEEEEEEcCCCEEEEEEeCCCC---CccCCCCEEEEEeccCCCCeeeeeeeeccCCCC-CeEEEEEEEccCCCchh
Confidence 36799999999999999999998764 679999999999984356678999999999876 89999999988899999
Q ss_pred ccccCCCCCEEEEe-cccceeeecCCC-CceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHH
Q 042788 134 HFREMHEGEYLPVK-GPKGRLKYKVGQ-ARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELD 211 (258)
Q Consensus 134 ~L~~l~~Gd~v~v~-gP~G~f~~~~~~-~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~ 211 (258)
||+++++||+|.++ ||+|.|.++... .++++||||||||||++++++++...+ ...+++|+|++|+.++++|.+||+
T Consensus 92 ~l~~l~~Gd~v~v~~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~el~ 170 (272)
T 2bgi_A 92 RLQHIKVGEQIILRPKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYE-KFDEVIMMHACRTVAELEYGRQLV 170 (272)
T ss_dssp HHTTCCTTCEEEEEEEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGT-SCSEEEEEEEESSSGGGHHHHHHH
T ss_pred HHHhCCCCCEEEEeeCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcC-CCCcEEEEEEeCCHHHhhHHHHHH
Confidence 99999999999999 999998876543 589999999999999999999987652 347899999999999999999999
Q ss_pred -HHHh-----hC-CCCeEEEEEEcCCCCCCCCccccccHHHHh
Q 042788 212 -SFAT-----NS-PNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ 247 (258)
Q Consensus 212 -~l~~-----~~-~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~ 247 (258)
++++ ++ +.++++++++++++ .+..|++++.+.+
T Consensus 171 ~~l~~~~~~~~~~~~~~~~~~~~s~~~---~~~~g~v~~~l~~ 210 (272)
T 2bgi_A 171 EALQEDPLIGELVEGKLKYYPTTTREE---FHHMGRITDNLAS 210 (272)
T ss_dssp HHHHHCTTTTTTSTTTEEEEEEESSSC---CSSBCCHHHHHHS
T ss_pred HHHHhcchhhcccCCcEEEEEEecCCc---cccCceechHHHh
Confidence 9987 55 33399999998863 2457899887554
No 17
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=100.00 E-value=4.2e-33 Score=243.53 Aligned_cols=196 Identities=18% Similarity=0.252 Sum_probs=165.1
Q ss_pred CCCCCCcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEecC--CCC-eeeeeccccccCC----C
Q 042788 48 SLDPENFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGKDS--EGN-EVIRPYTPITLDS----D 115 (258)
Q Consensus 48 ~~~~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~g~-~~~R~ySi~s~~~----~ 115 (258)
...+..+..++|++++.+++ ++++++|+.+.. ..|+||||+.|.+++. +|. ..+|+|||+|.+. +
T Consensus 31 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~ 107 (314)
T 1fnb_A 31 KFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE---IPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGD 107 (314)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC---CCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSS
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC---CCcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCC
Confidence 34456677899999999998 899999998764 6899999999997731 132 3689999999985 3
Q ss_pred CCEEEEEEEEe---------cCCccccccccCCCCCEEEEecccceee-ecCCCCceEEEEEcCccHHHHHHHHHHHHhC
Q 042788 116 IGYFELVVKMY---------PKGRMAHHFREMHEGEYLPVKGPKGRLK-YKVGQARAFGMIAGGTGITPMFQLTRAILEN 185 (258)
Q Consensus 116 ~~~l~~~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~-~~~~~~~~vvliagGtGItp~~sil~~l~~~ 185 (258)
.+.++|+||.. +.|.+|+||+++++||+|.+.||+|.|. .+.+..++++||||||||||++++++++...
T Consensus 108 ~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~ 187 (314)
T 1fnb_A 108 AKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFE 187 (314)
T ss_dssp SCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTCEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTC
T ss_pred CCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCCEEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHh
Confidence 58999999974 5699999999999999999999999964 4434468999999999999999999999875
Q ss_pred CC----CCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHH
Q 042788 186 PK----DKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMI 246 (258)
Q Consensus 186 ~~----~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l 246 (258)
+. ...+++|+|++|+.+|++|.+||+++++++++++++++++|+++++|.+..|++++.+.
T Consensus 188 ~~~~~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~ 252 (314)
T 1fnb_A 188 KHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMA 252 (314)
T ss_dssp CBTTBCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHHHH
T ss_pred ccccccCCCCEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEECCCCcccCCCceechHHHH
Confidence 31 13689999999999999999999999998885599999999988888888888887543
No 18
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=100.00 E-value=1.3e-33 Score=240.05 Aligned_cols=185 Identities=16% Similarity=0.254 Sum_probs=159.4
Q ss_pred CcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccc
Q 042788 53 NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA 132 (258)
Q Consensus 53 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S 132 (258)
.|++++|++++.+++++++++|+.++. ..|+||||+.|+++ .+|....|+|||++.+.+ +.++|+|+.+++|.+|
T Consensus 2 ~~~~~~V~~~~~~~~~~~~l~l~~~~~---~~~~pGq~v~l~~~-~~g~~~~R~ySi~s~~~~-~~~~~~i~~~~~G~~s 76 (257)
T 2qdx_A 2 NLYTERVLSVHHWNDTLFSFKTTRNPG---LRFKTGQFVMIGLE-VDGRPLMRAYSIASPNYE-EHLEFFSIKVPDGPLT 76 (257)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEECCTT---CCCCTTCEEEEEEE-ETTEEEEEEEECCSCTTS-SEEEEEEECCTTCTTH
T ss_pred ceEEEEEEEEEEcCCCeEEEEEeCCCC---CccCCCCEEEEEec-CCCCceeeeeEeecCCCC-CeEEEEEEEeCCCcch
Confidence 578999999999999999999998764 67999999999998 456678999999999876 8999999998889999
Q ss_pred cccccCCCCCEEEEe-cccceeeecCC-CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHH
Q 042788 133 HHFREMHEGEYLPVK-GPKGRLKYKVG-QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDEL 210 (258)
Q Consensus 133 ~~L~~l~~Gd~v~v~-gP~G~f~~~~~-~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL 210 (258)
+||+++++||+|.+. ||+|.|.++.. ..++++||||||||||++++++++...+ ...+++++|++|+.++++|.+||
T Consensus 77 ~~l~~l~~Gd~v~v~~gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~el 155 (257)
T 2qdx_A 77 SRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYE-RYEKVILVHGVRWVSELAYADFI 155 (257)
T ss_dssp HHHTTCCTTCEEEECSCCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHH-HCSEEEEEEEESSGGGCTTHHHH
T ss_pred hHHHhCCCCCEEEEecCCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcC-CCCeEEEEEEcCCHHHhHhHHHH
Confidence 999999999999999 99999887644 2589999999999999999999887542 23689999999999999999999
Q ss_pred H-HHHh-----hC--CCCeEEEEEEcCCCCCCCCccccccHHHHh
Q 042788 211 D-SFAT-----NS--PNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ 247 (258)
Q Consensus 211 ~-~l~~-----~~--~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~ 247 (258)
+ ++++ ++ ++ +++++++++++. +..|++++.+.+
T Consensus 156 ~~~l~~~~~~~~~~~~~-~~~~~~~s~~~~---~~~g~v~~~l~~ 196 (257)
T 2qdx_A 156 TKVLPEHEYFGDQVKEK-LIYYPLVTREPF---RNQGRQTDLMRS 196 (257)
T ss_dssp HTTGGGCTTTHHHHHHH-EEEEEEESSSCC---SSBSCHHHHHHH
T ss_pred HHHHHhchhhhccCCCc-EEEEEEecCCCc---ccCceechhhhh
Confidence 9 8876 33 34 999999988633 357899886554
No 19
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=100.00 E-value=3.3e-34 Score=245.45 Aligned_cols=188 Identities=13% Similarity=0.213 Sum_probs=157.8
Q ss_pred CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCc
Q 042788 51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGR 130 (258)
Q Consensus 51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~ 130 (258)
.+.|.+++|++++.+++++++++|+.++. ..|+||||+.++++ .+|...+|+|||++.+.+ +.++|+|+.+++|.
T Consensus 16 ~~~~~~~~V~~~~~~~~~~~~~~l~~~~~---~~~~pGQ~v~l~~~-~~~~~~~r~ySi~s~~~~-~~~~~~v~~~~~G~ 90 (271)
T 4fk8_A 16 MSKFDTATVLSVHHWTDTLFSFTCTRDQA---LRFNNGEFTMVGLE-VDGKPLTRAYSIVSPNYE-EHLEFFSIKVQNGP 90 (271)
T ss_dssp --CEEEEEEEEEEEEETTEEEEEECCCTT---CCCCTTCEEEEEEE-ETTEEEEEEEECCSCTTS-SSEEEEEECCTTCT
T ss_pred cccceeEEEEEEEEcCCCEEEEEEEcCCC---CCcCCCCEEEEEcc-CCCceeeeeEeccCCCCC-CcEEEEEEEECCCc
Confidence 35789999999999999999999998764 78999999999998 566778999999998865 67999999988899
Q ss_pred cccccccCCCCCEEEEe-cccceeeecC-CCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHH
Q 042788 131 MAHHFREMHEGEYLPVK-GPKGRLKYKV-GQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKD 208 (258)
Q Consensus 131 ~S~~L~~l~~Gd~v~v~-gP~G~f~~~~-~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~ 208 (258)
+|+||+++++||+|.++ ||+|.|.++. ...++++||||||||||++++++++...+ ...+++++|++|+.++++|.+
T Consensus 91 ~s~~l~~l~~Gd~v~v~~gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~ 169 (271)
T 4fk8_A 91 LTSRLQHLKVGDPVLIGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYE-RFDKVVLTHTCRLKGELAYMD 169 (271)
T ss_dssp THHHHTTCCTTCEEEEESCCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHH-HCSEEEEEECCCSHHHHHHHH
T ss_pred hhhHHhcCCCCCEEEEecCCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcC-CCCCEEEEEecCCHHHHhHHH
Confidence 99999999999999999 9999988764 35689999999999999999999987642 346899999999999999999
Q ss_pred HHHHHHhhCCC-------CeEEEEEEcCCCCCCCCccccccHHHHh
Q 042788 209 ELDSFATNSPN-------RFKVYYVLSQPTEVWNGGIGHVSKEMIQ 247 (258)
Q Consensus 209 eL~~l~~~~~~-------~~~v~~~~s~~~~~~~~~~G~i~~~~l~ 247 (258)
||+++++++|+ +++++.+++++.. +..|++++.+.+
T Consensus 170 el~~l~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~G~v~~~~~~ 212 (271)
T 4fk8_A 170 YIKHDLPGHEYLGDVIREKLVYYPTVTREEF---ENEGRITDLIAS 212 (271)
T ss_dssp HHHTCCTTCTTHHHHHHHHEEEEECC----------CCHHHHHHHH
T ss_pred HHHHHHHhCccccccccceEEEEEEecCCcc---ccccccChHHhc
Confidence 99999888772 3888888877654 457899886654
No 20
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=100.00 E-value=2.1e-32 Score=246.71 Aligned_cols=196 Identities=20% Similarity=0.303 Sum_probs=165.1
Q ss_pred CCCCCcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEec--CCCC-eeeeeccccccCCC----C
Q 042788 49 LDPENFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGKD--SEGN-EVIRPYTPITLDSD----I 116 (258)
Q Consensus 49 ~~~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~--~~g~-~~~R~ySi~s~~~~----~ 116 (258)
+.+..+..++|++++.+++ ++++++|+.++. ...|+||||+.|+++. .+|. ..+|+|||++.|.+ +
T Consensus 117 ~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~--~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~~ 194 (402)
T 2b5o_A 117 YRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEG--DLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDN 194 (402)
T ss_dssp SCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTS--CCCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTSS
T ss_pred ccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCC--CCCcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCCC
Confidence 4445567899999999999 999999998764 3789999999998762 1232 36899999999863 5
Q ss_pred CEEEEEEEEe----------cCCccccccccCCCC-CEEEEeccccee-eecCCCCceEEEEEcCccHHHHHHHHHHHHh
Q 042788 117 GYFELVVKMY----------PKGRMAHHFREMHEG-EYLPVKGPKGRL-KYKVGQARAFGMIAGGTGITPMFQLTRAILE 184 (258)
Q Consensus 117 ~~l~~~Vk~~----------~~G~~S~~L~~l~~G-d~v~v~gP~G~f-~~~~~~~~~vvliagGtGItp~~sil~~l~~ 184 (258)
+.++|+||.. +.|.+|+||+++++| |+|.+.||+|.| .++.+..++++||||||||||++++++++..
T Consensus 195 ~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~ 274 (402)
T 2b5o_A 195 KTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFK 274 (402)
T ss_dssp CEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCCCEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHT
T ss_pred CEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCceEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHH
Confidence 8999999983 468999999999999 999999999995 4444456899999999999999999999987
Q ss_pred CCCC----CCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHH
Q 042788 185 NPKD----KTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMI 246 (258)
Q Consensus 185 ~~~~----~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l 246 (258)
++.+ ..+++|+|++|+.+|++|.+||+++++++|+++++++++++++++|.+..|++++.+.
T Consensus 275 ~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~ 340 (402)
T 2b5o_A 275 EQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYVQSRVS 340 (402)
T ss_dssp CCCSSCCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSCBCCHHHHHH
T ss_pred hccccccccCCEEEEEecCCHHHhHHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCccchHHHHH
Confidence 6421 3689999999999999999999999999884599999999988888888888876543
No 21
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=100.00 E-value=7.3e-33 Score=236.12 Aligned_cols=182 Identities=13% Similarity=0.173 Sum_probs=154.7
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF 135 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L 135 (258)
+++|++++.+++++++++|+.++. ...|+||||+.|+++ ..+....|+|||++.|.+++.++|+||.++.|.+|+||
T Consensus 7 ~~~V~~~~~~t~~~~~l~l~~~~~--~~~~~pGQ~v~l~~~-~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~S~~l 83 (262)
T 1ep3_B 7 MMTVVSQREVAYNIFEMVLKGTLV--DEMDLPGQFLHLAVP-NGAMLLRRPISISSWDKRAKTCTILYRIGDETTGTYKL 83 (262)
T ss_dssp EEEEEEEEEEETTEEEEEEESGGG--GGCCSTTCEEEECCS-CTTCCSCEEEECCEEETTTTEEEEEEECCCTTSHHHHH
T ss_pred ceEEEEEEEecCCEEEEEEEcCcc--cccCCCCceEEEEcC-CCCceeeEEEEeeeecCCCCEEEEEEEEecCCchHHHH
Confidence 799999999999999999998763 468999999999987 44456789999999987778999999999899999999
Q ss_pred ccCCCCCEEEEecccce-eeecCC-CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHH
Q 042788 136 REMHEGEYLPVKGPKGR-LKYKVG-QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSF 213 (258)
Q Consensus 136 ~~l~~Gd~v~v~gP~G~-f~~~~~-~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l 213 (258)
+++++||+|.+.||+|+ |.++.+ ..++++||||||||||++++++++..++ .+++|+|++|+.+|++|.+||+++
T Consensus 84 ~~l~~Gd~v~v~gP~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~---~~v~l~~~~r~~~~~~~~~el~~l 160 (262)
T 1ep3_B 84 SKLESGAKVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG---CQMTILLGFASENVKILENEFSNL 160 (262)
T ss_dssp HTCCTTCEEEEEEEESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT---CEEEEEEEESSGGGCCCHHHHHTS
T ss_pred hcCCCCCEEEEEcccCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC---CeEEEEEEcCCHHHhhhHHHHhhh
Confidence 99999999999999999 887654 3689999999999999999999998763 689999999999999999999987
Q ss_pred HhhCCCCeEEEEEEcCCCCCCCCccccccHHHHhhhCCC
Q 042788 214 ATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQMHCPT 252 (258)
Q Consensus 214 ~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~~~~~~ 252 (258)
+.. +++++ + +++|.+..|++++ .+++.+++
T Consensus 161 ~~~-----~~~~~-~--~~~~~~~~g~v~~-~l~~~~~~ 190 (262)
T 1ep3_B 161 KNV-----TLKIA-T--DDGSYGTKGHVGM-LMNEIDFE 190 (262)
T ss_dssp TTE-----EEEEE-E--TTCSSSEESCHHH-HHHHCCSC
T ss_pred ccC-----cEEEE-E--CCCCCcceeehHH-HHHhhccC
Confidence 532 23333 2 2446677899998 56665543
No 22
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=100.00 E-value=3.9e-32 Score=236.29 Aligned_cols=195 Identities=23% Similarity=0.314 Sum_probs=160.7
Q ss_pred CCCCCCcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEecC--CCC-eeeeeccccccCC----C
Q 042788 48 SLDPENFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGKDS--EGN-EVIRPYTPITLDS----D 115 (258)
Q Consensus 48 ~~~~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~g~-~~~R~ySi~s~~~----~ 115 (258)
...+.....++|++++.+++ ++++++|+.+.. .+.|+||||+.|.+++. +|. ..+|+|||+|.|. +
T Consensus 15 ~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~~ 92 (304)
T 2bmw_A 15 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGG--NLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVD 92 (304)
T ss_dssp SBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTS--CCCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTS
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC--ccccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCCC
Confidence 33445566899999999999 899999998764 26899999999987632 133 3679999999885 3
Q ss_pred CCEEEEEEEEe----------cCCccccccccCCCCCEEEEecccceee-ecCCCCceEEEEEcCccHHHHHHHHHHHHh
Q 042788 116 IGYFELVVKMY----------PKGRMAHHFREMHEGEYLPVKGPKGRLK-YKVGQARAFGMIAGGTGITPMFQLTRAILE 184 (258)
Q Consensus 116 ~~~l~~~Vk~~----------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~-~~~~~~~~vvliagGtGItp~~sil~~l~~ 184 (258)
.+.++|+||.. ..|.+|+||+++++||+|.+.||+|.+. .+.+..++++||||||||||++++++++..
T Consensus 93 ~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~ 172 (304)
T 2bmw_A 93 DKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFK 172 (304)
T ss_dssp SSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHC
T ss_pred CCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCCEEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHH
Confidence 58999999972 3688999999999999999999999954 444456899999999999999999999875
Q ss_pred CCC--------CCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788 185 NPK--------DKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE 244 (258)
Q Consensus 185 ~~~--------~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~ 244 (258)
+.. ...+++|+|++|+.+|++|.+||+++++++|+++++++++|+++++|.+..++++..
T Consensus 173 ~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~ 240 (304)
T 2bmw_A 173 DAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDR 240 (304)
T ss_dssp HHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHH
T ss_pred hhhhhcccccccCCCEEEEEEeCChHhcchHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHH
Confidence 420 135799999999999999999999999988845999999999877777767777654
No 23
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=100.00 E-value=2.6e-32 Score=238.49 Aligned_cols=194 Identities=19% Similarity=0.284 Sum_probs=160.4
Q ss_pred CCCCCcEEEEEEEEEEeCCC--------------EeEEEEECCCCCccCCCCCCcEEEEEEecCC--CC--------eee
Q 042788 49 LDPENFKEFKLTKRTPISHN--------------TAKFRFALPKSTSILGLPVGQHILCRGKDSE--GN--------EVI 104 (258)
Q Consensus 49 ~~~~~~~~~~v~~~~~~~~~--------------~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~--g~--------~~~ 104 (258)
..+.....++|++++.++++ +++++|+.+.. ...|+||||+.|.+++.. +. ..+
T Consensus 16 ~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~--~~~~~pGQ~v~l~~~~~~~~g~~~~~~~~~~~~ 93 (314)
T 2rc5_A 16 FKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHS--AYPYVIGQSGGVIPPGEDPEKKAKGLADVGYTV 93 (314)
T ss_dssp BBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTT--TCCCCTTCEEEEECSSBCHHHHHTTCSCCBCCC
T ss_pred CCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCC--cCcccCCCEEEEECCCCccccCccchhhcCCCc
Confidence 33445678999999999998 99999998764 368999999999877211 21 267
Q ss_pred eeccccccCC----CCCEEEEEEEEe----------cCCccccccccCCCCCEEEEecccceeeecC--CCCceEEEEEc
Q 042788 105 RPYTPITLDS----DIGYFELVVKMY----------PKGRMAHHFREMHEGEYLPVKGPKGRLKYKV--GQARAFGMIAG 168 (258)
Q Consensus 105 R~ySi~s~~~----~~~~l~~~Vk~~----------~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~--~~~~~vvliag 168 (258)
|+|||+|.|. +.+.++|+||.+ ++|.+|+||+++++||+|.+.||+|.|...+ +..+++|||||
T Consensus 94 R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~~vlIag 173 (314)
T 2rc5_A 94 RLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSGDIMFLAT 173 (314)
T ss_dssp EEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCTTCEEEEEEEECSSSCCCSSCBCSCEEEEEE
T ss_pred eeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCCcCEEEEEeccCCceeCCCCCCCCCEEEEEC
Confidence 9999999985 468999999986 3688999998899999999999999965433 34689999999
Q ss_pred CccHHHHHHHHHHHHhCCC--CCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCC-CCccccccHHH
Q 042788 169 GTGITPMFQLTRAILENPK--DKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVW-NGGIGHVSKEM 245 (258)
Q Consensus 169 GtGItp~~sil~~l~~~~~--~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~-~~~~G~i~~~~ 245 (258)
||||||++++++++..++. ...+++|+|++|+.++++|.+||+++++++++ +++++++|+++++| .+..|++++.+
T Consensus 174 GtGIaP~~s~l~~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~g~~~~v~~~l 252 (314)
T 2rc5_A 174 GTGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYSDELVMMDYLKGLESKHKN-FKLITAISREEKNSFDGGRMYISHRV 252 (314)
T ss_dssp GGGGHHHHHHHHHHHTTCSSCBCSCEEEEEEESSGGGSCSHHHHHHHHHHHSS-EEEEEEETTTCBCTTTSSBCCHHHHH
T ss_pred CccHHHHHHHHHHHHHhcccCCCCcEEEEEEeCCHHHHhHHHHHHHHHHhCCc-EEEEEEECCCCCcccCCCceehhHHH
Confidence 9999999999999987631 23679999999999999999999999888776 99999999886554 67778887643
No 24
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.98 E-value=1.1e-31 Score=235.29 Aligned_cols=169 Identities=21% Similarity=0.341 Sum_probs=148.1
Q ss_pred CCCCCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEec
Q 042788 48 SLDPENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYP 127 (258)
Q Consensus 48 ~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~ 127 (258)
..++..|++++|++++.+++++++++|+.++......|+||||+.|+++ ++ ..|+|||++.+.+.+.++|.||+++
T Consensus 2 ~p~~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~--~g--~~R~ySi~s~~~~~~~l~i~Vk~~~ 77 (321)
T 2pia_A 2 TPQEDGFLRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVP--NG--SRRTYSLCNDSQERNRYVIAVKRDS 77 (321)
T ss_dssp CTTTTTCEEEEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECT--TS--CEEEEECCSCTTCCSEEEEEEECCT
T ss_pred CCCCCCcEEEEEEEEEEcCCCEEEEEEEcCCCCcCCCCCCCCEEEEECC--CC--CcEEEEeCCCCCCCCeEEEEEEEec
Confidence 3456789999999999999999999999887533458999999999987 23 7899999999987789999999988
Q ss_pred CCc-cccccc-cCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccc
Q 042788 128 KGR-MAHHFR-EMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDIL 205 (258)
Q Consensus 128 ~G~-~S~~L~-~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~ 205 (258)
+|. +|+||+ ++++||+|.++||+|.|.++.+ .++++||||||||||+++|++++..++ . .+++|+|++|+.++++
T Consensus 78 ~G~g~S~~L~~~l~~Gd~v~v~gP~g~f~l~~~-~~~~vliagG~GItP~~s~l~~l~~~~-~-~~v~l~~~~r~~~~~~ 154 (321)
T 2pia_A 78 NGRGGSISFIDDTSEGDAVEVSLPRNEFPLDKR-AKSFILVAGGIGITPMLSMARQLRAEG-L-RSFRLYYLTRDPEGTA 154 (321)
T ss_dssp TSCSHHHHHHHSCCTTCEEEECCCBCCSCCCTT-CSEEEEEEEGGGHHHHHHHHHHHHHHC-S-SEEEEEEEESCGGGCT
T ss_pred CCcchhHHHHhcCCCCCEEEEeCCccccccCCC-CCCEEEEEecccHhHHHHHHHHHHHcC-C-CcEEEEEEECChhhhH
Confidence 898 999998 9999999999999999988654 689999999999999999999998864 2 6899999999999999
Q ss_pred cHHHHHHHHhhCCCCeEEEE
Q 042788 206 LKDELDSFATNSPNRFKVYY 225 (258)
Q Consensus 206 ~~~eL~~l~~~~~~~~~v~~ 225 (258)
|.+||++++ ++.++++++
T Consensus 155 ~~~el~~l~--~~~~~~~~~ 172 (321)
T 2pia_A 155 FFDELTSDE--WRSDVKIHH 172 (321)
T ss_dssp THHHHHSTT--TTTTEEEEE
T ss_pred HHHHHhcCc--cCCeEEEEE
Confidence 999999886 333477764
No 25
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.95 E-value=1.4e-27 Score=202.41 Aligned_cols=165 Identities=12% Similarity=0.089 Sum_probs=136.1
Q ss_pred CCCcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecC-C
Q 042788 51 PENFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPK-G 129 (258)
Q Consensus 51 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~-G 129 (258)
+..|++++|++++.+++++++++|+.++......+.|||||.|.++..++....|+||+++.+. +.++|.++.+++ |
T Consensus 5 ~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~--~~~~i~~~~~~~~G 82 (252)
T 2gpj_A 5 KPAPRELEVIRSTYITPHMLRITLGGAGLAGFPADQESAYIKLLFPQAGERPLMRTYTIRQQRD--DEIDVDFVLHDTDG 82 (252)
T ss_dssp -CCCEEEEEEEEEEEETTEEEEEEESGGGTTCCSCCTTCEEEEEECCTTSCCEEEEEECCEEET--TEEEEEEECCSSCC
T ss_pred CCCcEEEEEEEEEEcCCCEEEEEEEcCChhhcCCCCCCCeEEEEcccCCCCCCCCceeeeccCC--CEEEEEEEEeCCCC
Confidence 4568899999999999999999999886533336899999999998334556899999999775 688999888766 9
Q ss_pred ccccccccCCCCCEEEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHH
Q 042788 130 RMAHHFREMHEGEYLPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDE 209 (258)
Q Consensus 130 ~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~e 209 (258)
.+|+||+++++||+|.+.||.|.|.++.. .++++||||||||||+++|++++... .++++++++++.+++...+
T Consensus 83 ~~S~~l~~l~~Gd~l~v~gP~G~f~l~~~-~~~~lliagGtGitPi~s~l~~l~~~----~~~~~~~~~~~~~d~~~l~- 156 (252)
T 2gpj_A 83 PASSWAKTAQVGELIQIGGPGLKKLINFE-ADWFLLAGDMTALPAISVNLAKLPNN----AVGYAVIEVLSEADIQPLV- 156 (252)
T ss_dssp HHHHHHHHCCTTCEEEEEEEECCCCCCSS-SSEEEEEEEGGGHHHHHHHHHHSCTT----CEEEEEEEESSGGGCCCCC-
T ss_pred cHHHHHhhCCCCCEEEEecCCCCCcCCCC-CceEEEEcchhhHHHHHHHHHhCCCC----CcEEEEEEECCHHHhhccc-
Confidence 99999999999999999999999987654 47899999999999999999998542 5788889999988875321
Q ss_pred HHHHHhhCCCCeEEEEEEcCC
Q 042788 210 LDSFATNSPNRFKVYYVLSQP 230 (258)
Q Consensus 210 L~~l~~~~~~~~~v~~~~s~~ 230 (258)
..++ ++++++.+++
T Consensus 157 ------~~~~-~~v~~~~~~~ 170 (252)
T 2gpj_A 157 ------HPEH-VELHWVINPE 170 (252)
T ss_dssp ------CCTE-EEEEEEECSS
T ss_pred ------CCCC-cEEEEEeCCC
Confidence 2344 8888777654
No 26
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=99.93 E-value=2.9e-25 Score=198.02 Aligned_cols=136 Identities=15% Similarity=0.178 Sum_probs=115.6
Q ss_pred eeeeccccccCCC-CCEEEEEEEEe--------cCCcccccccc-CCCCCEEEEec-ccceeeecCCCCceEEEEEcCcc
Q 042788 103 VIRPYTPITLDSD-IGYFELVVKMY--------PKGRMAHHFRE-MHEGEYLPVKG-PKGRLKYKVGQARAFGMIAGGTG 171 (258)
Q Consensus 103 ~~R~ySi~s~~~~-~~~l~~~Vk~~--------~~G~~S~~L~~-l~~Gd~v~v~g-P~G~f~~~~~~~~~vvliagGtG 171 (258)
..|+|||+|+|.+ ++.++|+||.+ +.|.+|+||++ +++||+|.+.| |.|.|.++.+..++++|||||||
T Consensus 159 ~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~g~F~lp~~~~~piimIa~GtG 238 (374)
T 1ddg_A 159 TPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTG 238 (374)
T ss_dssp CCEEEEBCCCTTTSCSEEEEEEEECEEEETTEEEECHHHHHHHHSCCSSCEEEEEEECCTTSCCCSSTTSCEEEECCGGG
T ss_pred CCccceecCCCCCCCCEEEEEEEEEEeecCCCCCCCCchHHHHhcCCCCCEEEEEEeeCCCccCCCCCCCCEEEEECCcc
Confidence 3699999999864 68999999986 56999999986 99999999998 55689887666789999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788 172 ITPMFQLTRAILENPKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE 244 (258)
Q Consensus 172 Itp~~sil~~l~~~~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~ 244 (258)
|||++++++++...+ ...+++|+|++|+. +|++|.+||++++++.+. +++++++|++++. +|++++.
T Consensus 239 IAP~~s~l~~~~~~~-~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~-~~l~~a~Srd~~~----k~yVq~~ 306 (374)
T 1ddg_A 239 IAPFRAFMQQRAADE-APGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVL-TRIDLAWSRDQKE----KVYVQDK 306 (374)
T ss_dssp GHHHHHHHHHHHHHT-CCSCEEEEEEESCHHHHCTTHHHHHHHHHTTSC-CEEEEEETTSSSS----CCCHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCCEEEEEEeCCchhhhhHHHHHHHHHHhCCC-cEEEEEEecCCCC----CccHHHH
Confidence 999999999998763 34689999999998 799999999999988776 8999999987643 3455443
No 27
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=99.89 E-value=7.6e-23 Score=183.43 Aligned_cols=137 Identities=17% Similarity=0.218 Sum_probs=113.0
Q ss_pred eeeeccccccCCC-CCEEEEEEEEecC----------CccccccccCCCCCEEE--EecccceeeecCCCCceEEEEEcC
Q 042788 103 VIRPYTPITLDSD-IGYFELVVKMYPK----------GRMAHHFREMHEGEYLP--VKGPKGRLKYKVGQARAFGMIAGG 169 (258)
Q Consensus 103 ~~R~ySi~s~~~~-~~~l~~~Vk~~~~----------G~~S~~L~~l~~Gd~v~--v~gP~G~f~~~~~~~~~vvliagG 169 (258)
.+|+|||+|+|.. ++.++|+|+..+. |.+|+||+++++||+|. ++||+|.|.++.+..++++|||||
T Consensus 170 ~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~v~~P~g~F~lp~~~~~piImIg~G 249 (393)
T 4dql_A 170 RPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLPKDPETPLIMVGPG 249 (393)
T ss_dssp CCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTCEEEEEEECCSSCCCCCSSTTSCEEEECCG
T ss_pred cceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcCEEEEEEEcCCCCcccCccCCCCeEEEccC
Confidence 4799999999864 5889999998633 88999999999999998 789999999877666899999999
Q ss_pred ccHHHHHHHHHHH---HhCCCCCCeEEEEEEeCC-CcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788 170 TGITPMFQLTRAI---LENPKDKTNVHLIYANVT-VGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE 244 (258)
Q Consensus 170 tGItp~~sil~~l---~~~~~~~~~v~l~~~~r~-~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~ 244 (258)
||||||++++++. ...+....+++|+|++|+ .+|++|.+||+++.+. ++ ++++.++|+++.+. ++++++.
T Consensus 250 tGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~~-l~l~~a~Sr~~~~~---k~yVq~~ 323 (393)
T 4dql_A 250 TGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSE-GI-ITLHTAFSRMPNQP---KTYVQHV 323 (393)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHT-TS-CEEEEEESSCTTSC---CCCHHHH
T ss_pred ceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhC-CC-eEEEEEEeCCCCCC---CcchhhH
Confidence 9999999999984 334334468999999999 5899999999999765 55 99999999864432 4555543
No 28
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=99.88 E-value=1.5e-22 Score=183.96 Aligned_cols=137 Identities=12% Similarity=0.103 Sum_probs=114.3
Q ss_pred eeeccccccCCC-CCEEEEEEEEe----c-------CCccccccccCCCCCEEEEec-ccceeeecCCCCceEEEEEcCc
Q 042788 104 IRPYTPITLDSD-IGYFELVVKMY----P-------KGRMAHHFREMHEGEYLPVKG-PKGRLKYKVGQARAFGMIAGGT 170 (258)
Q Consensus 104 ~R~ySi~s~~~~-~~~l~~~Vk~~----~-------~G~~S~~L~~l~~Gd~v~v~g-P~G~f~~~~~~~~~vvliagGt 170 (258)
.|+|||+|+|.+ ++.++|+|+.. + .|.+|+||+++++||+|.+.| |.|.|.++.+..++++||||||
T Consensus 210 ~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~lp~~~~~piilIagGt 289 (435)
T 1f20_A 210 PRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCILVGPGT 289 (435)
T ss_dssp CEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEEEECCTTSSCCSCTTSCEEEECCGG
T ss_pred CccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCCEEEEEEecCCCccCCCCCCCCEEEEECCc
Confidence 599999999864 57899999864 2 378999999999999999999 6778988766668999999999
Q ss_pred cHHHHHHHHHHHHhC----CCCCCeEEEEEEeCCCc-ccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788 171 GITPMFQLTRAILEN----PKDKTNVHLIYANVTVG-DILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE 244 (258)
Q Consensus 171 GItp~~sil~~l~~~----~~~~~~v~l~~~~r~~~-d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~ 244 (258)
|||||+++++++... +....+++|+|++|+.+ |++|.+||+++.++++. +++++++|++++++ +|++++.
T Consensus 290 GIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~-~~l~~a~Sr~~~~~---k~yVq~~ 364 (435)
T 1f20_A 290 GIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVF-RELYTAYSREPDRP---KKYVQDV 364 (435)
T ss_dssp GGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSE-EEEEEEESSCTTSC---CCCHHHH
T ss_pred CcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHHHHHHcCCc-cEEEEEECCCCCCC---CcchhhH
Confidence 999999999988763 12346899999999997 78999999999988776 78999999876543 4566654
No 29
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=99.88 E-value=9.9e-23 Score=189.10 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=113.9
Q ss_pred eeeeccccccCC-CCCEEEEEEEEe-----------cCCccccccccC-----------CCCC-------EEEEecccc-
Q 042788 103 VIRPYTPITLDS-DIGYFELVVKMY-----------PKGRMAHHFREM-----------HEGE-------YLPVKGPKG- 151 (258)
Q Consensus 103 ~~R~ySi~s~~~-~~~~l~~~Vk~~-----------~~G~~S~~L~~l-----------~~Gd-------~v~v~gP~G- 151 (258)
..|+|||+|++. +++.++|+|+.+ ..|.+|+||+++ ++|| .|.+.+|.|
T Consensus 290 ~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~~~~~Gd~~~~~~~~V~v~~p~g~ 369 (539)
T 2qtl_A 290 QPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRTTN 369 (539)
T ss_dssp CCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC--------------CCCEEEEEECSCC
T ss_pred cceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccccCCCCCccccCceEEEEEeeeCC
Confidence 469999999986 468999999987 458899999876 8999 999999987
Q ss_pred eeeecCCCCceEEEEEcCccHHHHHHHHHHHHh---CC--CCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEE
Q 042788 152 RLKYKVGQARAFGMIAGGTGITPMFQLTRAILE---NP--KDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYY 225 (258)
Q Consensus 152 ~f~~~~~~~~~vvliagGtGItp~~sil~~l~~---~~--~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~ 225 (258)
.|.++.+..+++||||||||||||++++++... .+ ....+++|+|++|+. +|++|.+||+++++.++. +++++
T Consensus 370 ~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~ly~dEL~~~~~~g~~-~~l~~ 448 (539)
T 2qtl_A 370 SFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKHGIL-THLKV 448 (539)
T ss_dssp CCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSS-CEEEE
T ss_pred CccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhHHHHHHHHHHHhCCC-cEEEE
Confidence 698876666899999999999999999998532 11 134689999999999 799999999999988776 89999
Q ss_pred EEcCCCC--CCCCccccccHHHH
Q 042788 226 VLSQPTE--VWNGGIGHVSKEMI 246 (258)
Q Consensus 226 ~~s~~~~--~~~~~~G~i~~~~l 246 (258)
++|++++ .|.+.+||+++.+.
T Consensus 449 afSRd~~~~~~~g~k~yVqd~l~ 471 (539)
T 2qtl_A 449 SFSRDAPVGEEEAPAKYVQDNIQ 471 (539)
T ss_dssp EESSSCC------CCCSHHHHHH
T ss_pred EEccCCCccccCCCccchhHHHH
Confidence 9998764 46678899987543
No 30
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=99.86 E-value=1.6e-21 Score=185.98 Aligned_cols=138 Identities=12% Similarity=0.098 Sum_probs=115.3
Q ss_pred eeeeccccccCCC-CCEEEEEEEEe----c-------CCccccccccCCCCCEEEEec-ccceeeecCCCCceEEEEEcC
Q 042788 103 VIRPYTPITLDSD-IGYFELVVKMY----P-------KGRMAHHFREMHEGEYLPVKG-PKGRLKYKVGQARAFGMIAGG 169 (258)
Q Consensus 103 ~~R~ySi~s~~~~-~~~l~~~Vk~~----~-------~G~~S~~L~~l~~Gd~v~v~g-P~G~f~~~~~~~~~vvliagG 169 (258)
..|+|||+|+|.+ ++.++|+|+.. + .|.+|+||+++++||+|.+.+ |.|.|.++.+..+++||||||
T Consensus 430 ~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~p~g~F~lp~~~~~piIlIagG 509 (688)
T 1tll_A 430 QPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCILVGPG 509 (688)
T ss_dssp CCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEEECHHHHHHTTCCTTSEEEEEEECCGGGSCCSCTTSCEEEEEEG
T ss_pred ceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcCCCchhHHHHhCCCCCEEEEEeccCCCcccCcCCCCCEEEEEcC
Confidence 3699999999864 57899999864 2 278999999999999999999 677898876666899999999
Q ss_pred ccHHHHHHHHHHHHhC----CCCCCeEEEEEEeCCCc-ccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHH
Q 042788 170 TGITPMFQLTRAILEN----PKDKTNVHLIYANVTVG-DILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKE 244 (258)
Q Consensus 170 tGItp~~sil~~l~~~----~~~~~~v~l~~~~r~~~-d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~ 244 (258)
||||||+++++++... +....+++|+|++|+.+ |++|.+||+++.++++. +++++++|+++++| +|++++.
T Consensus 510 tGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~~~~~-~~l~~a~Sr~~~~~---k~yVq~~ 585 (688)
T 1tll_A 510 TGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVF-RELYTAYSREPDRP---KKYVQDV 585 (688)
T ss_dssp GGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTTCTTHHHHHHHHHTTSE-EEEEEEESSCTTSC---CCCHHHH
T ss_pred cchHHHHHHHHHHHHhhhhccCCCCCEEEEEEeccchhhhhHHHHHHHHHHcCCc-eEEEEEECCCCCCC---ccchhhh
Confidence 9999999999988763 12347899999999998 79999999999988876 89999999986554 3555543
No 31
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=99.85 E-value=4.4e-21 Score=174.59 Aligned_cols=139 Identities=16% Similarity=0.202 Sum_probs=113.2
Q ss_pred eeeeccccccCCC-CCEEEEEEEEe---------cCCccccccccCCCCC------EEEEecccceeeecCCCCceEEEE
Q 042788 103 VIRPYTPITLDSD-IGYFELVVKMY---------PKGRMAHHFREMHEGE------YLPVKGPKGRLKYKVGQARAFGMI 166 (258)
Q Consensus 103 ~~R~ySi~s~~~~-~~~l~~~Vk~~---------~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~~~~~~~vvli 166 (258)
..|+|||+|+|.. ++.++|+|+.. +.|.+|+||+++.+|+ .|.+.+|.|.|.++.+..++++||
T Consensus 233 ~pR~YSIsSsp~~~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~~~~~piImI 312 (458)
T 3qfs_A 233 QARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMV 312 (458)
T ss_dssp CCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCSSTTSCEEEE
T ss_pred cceeEeeccCcccCCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCCcccCCCCCCceEEE
Confidence 3699999999864 68899988642 3588999998877765 699999999999877667899999
Q ss_pred EcCccHHHHHHHHHHHH---hCCCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCcccccc
Q 042788 167 AGGTGITPMFQLTRAIL---ENPKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVS 242 (258)
Q Consensus 167 agGtGItp~~sil~~l~---~~~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~ 242 (258)
|||||||||++++++.. .++....+++|+|++|+. +|++|.+||++++++++. +++++++|+++. .+||++
T Consensus 313 ggGTGIAPfrs~lq~r~~l~~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l-~~l~~a~SRd~~----~k~yVq 387 (458)
T 3qfs_A 313 GPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGAL-TQLNVAFSREQS----HKVYVQ 387 (458)
T ss_dssp CCGGGGHHHHHHHHHHHHHHHHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSS-SEEEEEETTSSS----SCCCHH
T ss_pred cCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCC-CEEEEEEECCCC----CcccHh
Confidence 99999999999999853 232234689999999996 799999999999988765 689999998653 367777
Q ss_pred HHHH
Q 042788 243 KEMI 246 (258)
Q Consensus 243 ~~~l 246 (258)
+.+.
T Consensus 388 d~l~ 391 (458)
T 3qfs_A 388 HLLK 391 (458)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 32
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=99.84 E-value=2.2e-22 Score=191.84 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=120.6
Q ss_pred CCCcEEEEEEecCCCCeeeeeccccccCCC-CCEEEEEEEE------------ecCCccccccccCCC------------
Q 042788 86 PVGQHILCRGKDSEGNEVIRPYTPITLDSD-IGYFELVVKM------------YPKGRMAHHFREMHE------------ 140 (258)
Q Consensus 86 ~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~-~~~l~~~Vk~------------~~~G~~S~~L~~l~~------------ 140 (258)
.|+|++...+| ...+|+|||+|+|.. ++.++|+|+. ...|.+|+||+++++
T Consensus 415 ~p~~~l~~~lp----~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~ 490 (682)
T 2bpo_A 415 VPMQFLVESVP----QMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNL 490 (682)
T ss_dssp SCHHHHHHHSC----BCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCC
T ss_pred CCHHHHHHhCc----ccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhccccccccccccccc
Confidence 46777766555 246899999999864 5789998753 236889999987777
Q ss_pred CCEEEEeccccee--------------eecCCCCceEEEEEcCccHHHHHHHHHHHHhCC---------CCCCeEEEEEE
Q 042788 141 GEYLPVKGPKGRL--------------KYKVGQARAFGMIAGGTGITPMFQLTRAILENP---------KDKTNVHLIYA 197 (258)
Q Consensus 141 Gd~v~v~gP~G~f--------------~~~~~~~~~vvliagGtGItp~~sil~~l~~~~---------~~~~~v~l~~~ 197 (258)
|+++.+.||+|.| .++.+...+++|||+|||||||+++++++.... ....+++|+|+
T Consensus 491 G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG 570 (682)
T 2bpo_A 491 PVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYG 570 (682)
T ss_dssp CCCCCSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEE
T ss_pred ccceeeccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEe
Confidence 9999999999986 233344578999999999999999999887532 12468999999
Q ss_pred eCCCcccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCccccccHHHHh
Q 042788 198 NVTVGDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVSKEMIQ 247 (258)
Q Consensus 198 ~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~~~~l~ 247 (258)
+|+.+|++|.+||++++.+.+.++++++++|+++. +.+||+++.+.+
T Consensus 571 ~R~~~D~ly~dEl~~~~~~~g~~~~l~~afSr~d~---~~k~yVqd~l~e 617 (682)
T 2bpo_A 571 SRNTDDFLYQDEWPEYAKKLDGSFEMVVAHSRLPN---TKKVYVQDKLKD 617 (682)
T ss_dssp ESSSSSCTTTTTHHHHHHHHGGGEEEEEEESCCTT---SCCCCHHHHHHH
T ss_pred cCChhhhhhHHHHHHHHHhcCCceEEEEEECCCCC---CCCcchHHHHHh
Confidence 99999999999999996544333999999998643 347888775443
No 33
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=99.83 E-value=2.2e-20 Score=176.27 Aligned_cols=139 Identities=17% Similarity=0.220 Sum_probs=111.8
Q ss_pred eeeeccccccCCC-CCEEEEEEEEe---------cCCccccccccCCC-CC-----EEEEecccceeeecCCCCceEEEE
Q 042788 103 VIRPYTPITLDSD-IGYFELVVKMY---------PKGRMAHHFREMHE-GE-----YLPVKGPKGRLKYKVGQARAFGMI 166 (258)
Q Consensus 103 ~~R~ySi~s~~~~-~~~l~~~Vk~~---------~~G~~S~~L~~l~~-Gd-----~v~v~gP~G~f~~~~~~~~~vvli 166 (258)
..|+|||+|+|.. ++.++|+|+.. +.|.+|+||+++.+ || +|.+.+|.|.|.++.+..++++||
T Consensus 393 ~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~~~~~~v~v~~p~g~F~lp~~~~~piimI 472 (618)
T 3qe2_A 393 QARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMV 472 (618)
T ss_dssp CCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC-----CCEEEEEEECCSCCCCSSTTSCEEEE
T ss_pred ccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCCCcceEEEEEEecCcccCCCCCCCCeEEE
Confidence 3699999999854 57888887532 35889999998888 88 999999999999877667899999
Q ss_pred EcCccHHHHHHHHHHHHh---CCCCCCeEEEEEEeCCC-cccccHHHHHHHHhhCCCCeEEEEEEcCCCCCCCCcccccc
Q 042788 167 AGGTGITPMFQLTRAILE---NPKDKTNVHLIYANVTV-GDILLKDELDSFATNSPNRFKVYYVLSQPTEVWNGGIGHVS 242 (258)
Q Consensus 167 agGtGItp~~sil~~l~~---~~~~~~~v~l~~~~r~~-~d~~~~~eL~~l~~~~~~~~~v~~~~s~~~~~~~~~~G~i~ 242 (258)
|||||||||++++++... ++....+++|+|++|+. +|++|.+||+++.++... ++++.++|++++. +||++
T Consensus 473 g~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~l-~~l~~a~Srd~~~----k~yVq 547 (618)
T 3qe2_A 473 GPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGAL-TQLNVAFSREQSH----KVYVQ 547 (618)
T ss_dssp CCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSS-SEEEEEETTSSSS----CCCHH
T ss_pred cCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcCCC-cEEEEEEcCCCCC----CCcHH
Confidence 999999999999998763 32234689999999999 599999999999887543 5999999987542 56776
Q ss_pred HHHH
Q 042788 243 KEMI 246 (258)
Q Consensus 243 ~~~l 246 (258)
+.+.
T Consensus 548 d~l~ 551 (618)
T 3qe2_A 548 HLLK 551 (618)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 34
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.74 E-value=2.1e-19 Score=141.50 Aligned_cols=104 Identities=22% Similarity=0.210 Sum_probs=73.5
Q ss_pred CCCCCE-EEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhh
Q 042788 138 MHEGEY-LPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATN 216 (258)
Q Consensus 138 l~~Gd~-v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~ 216 (258)
+++||+ +.++||+|+|.... ..++++||||||||||++++++++.+++ .+++++ ++|+.++++|.+||++++.+
T Consensus 1 L~~Gd~vl~v~gP~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~~~---~~v~l~-g~r~~~d~~~~~el~~l~~~ 75 (158)
T 3lrx_A 1 MKEGDSLLNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG---NDVTTL-HVTFEPMVILKEELEKAVTR 75 (158)
T ss_dssp -----------CCCCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHHT---CEEEEE-EECBGGGCCSHHHHHHHSSE
T ss_pred CcCCCEeeEEECCCCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHhcC---CcEEEE-EeCCHHHhhHHHHHHHHHhc
Confidence 579999 69999999954333 4689999999999999999999998764 589999 99999999999999998643
Q ss_pred CCCCeEEEEEEcCC----CCCCCCccccccHHHHhhhCC
Q 042788 217 SPNRFKVYYVLSQP----TEVWNGGIGHVSKEMIQMHCP 251 (258)
Q Consensus 217 ~~~~~~v~~~~s~~----~~~~~~~~G~i~~~~l~~~~~ 251 (258)
+.++++++++ +++|.+..|++++ .+++.++
T Consensus 76 ----~~~~~v~~~~~~~~~~~~~g~~G~v~~-~l~~~l~ 109 (158)
T 3lrx_A 76 ----HIVEPVPLNPNQDFLANMKNVSQRLKE-KVRELLE 109 (158)
T ss_dssp ----EEECCBCCCTTSCHHHHHHHHHHHHHH-HHHHHHH
T ss_pred ----eEEEEeeccccccCCCCCCCCcccccH-HHHHhhc
Confidence 6555444443 2456778899997 4555544
No 35
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.69 E-value=4.8e-18 Score=131.40 Aligned_cols=100 Identities=20% Similarity=0.169 Sum_probs=76.0
Q ss_pred EEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEE
Q 042788 144 LPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKV 223 (258)
Q Consensus 144 v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v 223 (258)
+.+.||+|+|...+ ..++++|||||+||||++++++++.+++ .+++++ ++|+.+++++.+||++++++ +.+
T Consensus 3 ~~v~GP~G~~~~~~-~~~~~llIaGG~GiaPl~sm~~~l~~~~---~~v~l~-g~R~~~~~~~~~el~~l~~~----~~~ 73 (142)
T 3lyu_A 3 LNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG---NDVTTL-HVTFEPMVILKEELEKAVTR----HIV 73 (142)
T ss_dssp ----CCCSCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHTT---CEEEEE-EEEEGGGCCSHHHHHTTSSE----EEE
T ss_pred eeeeCCCCCCccCC-CCCeEEEEECcCcHHHHHHHHHHHHhcC---CcEEEE-EeCCHHHhhHHHHHHHHHhh----eEE
Confidence 47899999965443 3589999999999999999999998865 579999 99999999999999987643 666
Q ss_pred EEEEcCC----CCCCCCccccccHHHHhhhCCCC
Q 042788 224 YYVLSQP----TEVWNGGIGHVSKEMIQMHCPTP 253 (258)
Q Consensus 224 ~~~~s~~----~~~~~~~~G~i~~~~l~~~~~~~ 253 (258)
+++++.+ +++|.+..|++++ .+++.+++.
T Consensus 74 ~~~~~~~~~~~~d~~~g~~G~v~~-~l~~~~~~~ 106 (142)
T 3lyu_A 74 EPVPLNPNQDFLANMKNVSQRLKE-KVRELLESE 106 (142)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHH-HHHHHHHSS
T ss_pred EEeecccccCCCCCCCCCccchhH-HHHHhcccC
Confidence 6555543 3456778899996 466665443
No 36
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.68 E-value=3.8e-17 Score=131.12 Aligned_cols=88 Identities=14% Similarity=0.184 Sum_probs=73.9
Q ss_pred EEEecccceeeecCCCCceEEEEEcCccHHHHHHHHHHHHhCC------CCCCeEEEEEEeCCCcccc-cHHHHHHHHhh
Q 042788 144 LPVKGPKGRLKYKVGQARAFGMIAGGTGITPMFQLTRAILENP------KDKTNVHLIYANVTVGDIL-LKDELDSFATN 216 (258)
Q Consensus 144 v~v~gP~G~f~~~~~~~~~vvliagGtGItp~~sil~~l~~~~------~~~~~v~l~~~~r~~~d~~-~~~eL~~l~~~ 216 (258)
|.++||+|.|..+...++++|||||||||||++++++++.... ....+++|+|++|+.+++. |.++|++++++
T Consensus 1 v~v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~~~ 80 (186)
T 3a1f_A 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQ 80 (186)
T ss_dssp CCTTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHHHH
T ss_pred CeEECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHHHH
Confidence 3578999998765556789999999999999999999998641 2357899999999999998 99999999877
Q ss_pred C-----CCCeEEEEEEcCCC
Q 042788 217 S-----PNRFKVYYVLSQPT 231 (258)
Q Consensus 217 ~-----~~~~~v~~~~s~~~ 231 (258)
+ |+++++++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~t~~~ 100 (186)
T 3a1f_A 81 MQERNNAGFLSYNIYLTGWD 100 (186)
T ss_dssp HHHTTCTTSEEEEEEETTC-
T ss_pred HhhccCCCeEEEEEEEcCCC
Confidence 5 64599999999763
No 37
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=84.38 E-value=0.92 Score=39.23 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=26.9
Q ss_pred ceEEEEEcCcc--HHHHHHHHHHHHhCCCCCCeEEEEE
Q 042788 161 RAFGMIAGGTG--ITPMFQLTRAILENPKDKTNVHLIY 196 (258)
Q Consensus 161 ~~vvliagGtG--Itp~~sil~~l~~~~~~~~~v~l~~ 196 (258)
+++++.||||| |.|.+++++++.+++ .+|.++-
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g---~~V~~vg 37 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARG---YAVHWLG 37 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCC---CEEEEEE
Confidence 68899999997 999999999999875 4565543
No 38
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=66.57 E-value=20 Score=32.02 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=36.6
Q ss_pred CCCCCcEEEEEEEEEEeCC----CEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 49 LDPENFKEFKLTKRTPISH----NTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 49 ~~~~~~~~~~v~~~~~~~~----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
.+......++|++++.+++ +++.++|++++. ...|+||+++-|...
T Consensus 57 ~~~~~p~~a~v~~n~~Lt~~~~r~~~hie~dl~~s--~l~Y~~GD~l~V~p~ 106 (458)
T 3qfs_A 57 FDAKNPFLAAVTTNRKLNQGTERHLMHLELDISDS--KIRYESGDHVAVYPA 106 (458)
T ss_dssp CCSSSCEEEEEEEEEECCSSSSSCEEEEEEECTTS--CCCCCTTCEEEECCC
T ss_pred CCCCCCEEEEEEEEEEcCCCCCCCEEEEEEEeCCC--CcccCCCCEEEEEee
Confidence 3344456899999999965 599999998765 489999999999643
No 39
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=64.42 E-value=16 Score=32.01 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=33.2
Q ss_pred cEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 54 FKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 54 ~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
...++|++++.+++ +++.++|++++. ..|+||+++.|...
T Consensus 6 ~~~a~v~~n~~Lt~~~~~~~~~hie~~l~~~---~~Y~~GD~l~v~p~ 50 (393)
T 4dql_A 6 AFSTNVVASKELQQPGSARSTRHLEIELPKE---ASYQEGDHLGVIPR 50 (393)
T ss_dssp CEEEEEEEEEECSCTTCSCCEEEEEEECCTT---CCCCTTCEEEECCC
T ss_pred cEEEEEEeEEEcCCCCCCceEEEEEEECCCC---CccCCCCEEEEEcc
Confidence 35789999999974 699999999753 88999999999643
No 40
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=62.24 E-value=20 Score=32.84 Aligned_cols=46 Identities=7% Similarity=0.108 Sum_probs=34.9
Q ss_pred CCCCCcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 49 LDPENFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 49 ~~~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
........++|++.+.+++ +++.++|+.++. ...|+||+++-|...
T Consensus 109 ~~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~--~l~Y~~GD~l~V~P~ 159 (539)
T 2qtl_A 109 TSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNT--DFSYQPGDAFSVICP 159 (539)
T ss_dssp ----CCEEEEEEEEEECSCTTCSSCEEEEEEECTTS--CCCCCTTCEEEEECC
T ss_pred CCCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCC--CcCcCCCCEEEEEeC
Confidence 3344556799999999984 589999998875 378999999999644
No 41
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=55.79 E-value=35 Score=29.83 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=26.6
Q ss_pred EEEEEEEEEeC---CCEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 56 EFKLTKRTPIS---HNTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 56 ~~~v~~~~~~~---~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
+.+|..+.... ..++.+++..+.+. ..++||+++.+.+.
T Consensus 277 ~G~V~~I~p~~d~~t~t~~v~i~l~n~~--~~L~pGm~v~v~i~ 318 (413)
T 3ne5_B 277 TIRKWTLLPGVDAATRTLQLRLEVDNAD--EALKPGMNAWLQLN 318 (413)
T ss_dssp EECCCEECSCCBTTTTEEEEEEEEECTT--CCSCTTCEEEEEEE
T ss_pred EEEEEEEeCccCCCCcEEEEEEEEECCC--CccCCCCEEEEEEe
Confidence 55666655432 24677777776653 56899999999886
No 42
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=50.48 E-value=27 Score=22.60 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhhhhhccCC
Q 042788 23 GLLVAVAAMIITIAVYLCSIKKS 45 (258)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~ 45 (258)
++.++...+...+||+|.+-++.
T Consensus 21 liavaalg~li~gcwcylrlqri 43 (90)
T 1zza_A 21 LIAIAALGALILGCWCYLRLQRI 43 (90)
T ss_dssp HHHHHHHHHHHHHHHTTTSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455788998875554
No 43
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=50.45 E-value=66 Score=27.06 Aligned_cols=40 Identities=18% Similarity=0.039 Sum_probs=27.7
Q ss_pred EEEEEEEEEEeC---CCEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 55 KEFKLTKRTPIS---HNTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 55 ~~~~v~~~~~~~---~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
.+++|..+.... ...+.+++..+.+. ..+.||+++.+.+.
T Consensus 239 ~~g~v~~i~~~~d~~~~~~~v~~~~~~~~--~~l~~G~~~~v~i~ 281 (359)
T 3lnn_A 239 QPGKVRYVGQILDADTRTTKVRMVFDNPD--GRLRPGMFAQATFL 281 (359)
T ss_dssp EEEEEEECCCCCCTTSCCEEEEEEEECSS--CCCCTTCEEEEEEE
T ss_pred EEEEEEEEecccCCCCcEEEEEEEecCCC--CCcCCCCEEEEEEe
Confidence 367777776543 24566666665542 56899999999987
No 44
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=49.67 E-value=32 Score=24.25 Aligned_cols=57 Identities=14% Similarity=0.314 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCCCCCeEEEEEEeCCCcc---------------------cccHHHHHHHHhhCCCCeEEEEEEcCCCC
Q 042788 174 PMFQLTRAILENPKDKTNVHLIYANVTVGD---------------------ILLKDELDSFATNSPNRFKVYYVLSQPTE 232 (258)
Q Consensus 174 p~~sil~~l~~~~~~~~~v~l~~~~r~~~d---------------------~~~~~eL~~l~~~~~~~~~v~~~~s~~~~ 232 (258)
-+..+.+.+..++ -++.|+|+..+... --|++.+.++-++||. +.+..+++..+.
T Consensus 14 ilkeivreikrqg---vrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypq-ldvvvivttddk 89 (162)
T 2l82_A 14 ILKEIVREIKRQG---VRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQ-LDVVVIVTTDDK 89 (162)
T ss_dssp HHHHHHHHHHHTT---CEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTT-CCEEEEEECCCH
T ss_pred HHHHHHHHHHhCC---eEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCC-CcEEEEEecCcH
Confidence 3456777777776 68889998665321 1356667777788999 999888876655
Q ss_pred CC
Q 042788 233 VW 234 (258)
Q Consensus 233 ~~ 234 (258)
.|
T Consensus 90 ew 91 (162)
T 2l82_A 90 EW 91 (162)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 45
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=45.73 E-value=67 Score=29.80 Aligned_cols=40 Identities=10% Similarity=0.137 Sum_probs=33.3
Q ss_pred cEEEEEEEEEEeCC----CEeEEEEECCCCCccCCCCCCcEEEEEE
Q 042788 54 FKEFKLTKRTPISH----NTAKFRFALPKSTSILGLPVGQHILCRG 95 (258)
Q Consensus 54 ~~~~~v~~~~~~~~----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~ 95 (258)
...++|++++.+++ +++.++|++++. ...|+||+++.|..
T Consensus 222 ~~~a~v~~n~~Lt~~~~~~~~hie~~~~~~--~~~Y~~GD~l~V~p 265 (618)
T 3qe2_A 222 PFLAAVTTNRKLNQGTERHLMHLELDISDS--KIRYESGDHVAVYP 265 (618)
T ss_dssp CEEEEEEEEEECSCCSSSCEEEEEEECTTS--CCCCCTTCEEEECC
T ss_pred cEEEEEEeEEEcCCCCCCcEEEEEEEcCCC--CcccccCCEEEEEc
Confidence 46899999999864 599999998765 48899999999953
No 46
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=44.50 E-value=56 Score=28.78 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=33.8
Q ss_pred CcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 53 NFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 53 ~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
....++|++++.+++ +++.++|+..... ...|+||+++.|...
T Consensus 29 ~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~-~~~Y~~GD~l~V~p~ 76 (435)
T 1f20_A 29 RVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQ-ELQYQPGDHLGVFPG 76 (435)
T ss_dssp CCEEEEEEEEEECSCTTCSSCEEEEEEECTTCG-GGCCCTTCEEEECCC
T ss_pred CcEEEEEEeEEECCCCCCCceEEEEEEECCCCC-CCcCCCCCEEEEEec
Confidence 445799999999985 5899999986532 378999999999643
No 47
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=43.75 E-value=1.1e+02 Score=23.63 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=52.0
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF 135 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L 135 (258)
..+|.+++...+ ..+++++.|... ......|+.|.+. |. ..|+.+..+ +.+.+.+ . .----.-|
T Consensus 9 vG~V~~i~~~~~-~~~l~i~~~~~~-~~~~~~GdSIAvn-----Gv----CLTV~~~~~--~~f~vdv-~--ETl~~T~L 72 (186)
T 3ddy_A 9 RGVIRSISKSED-SQRHGIAFPEGM-FQLVDVDTVMLVN-----GC----SNTVVRILG--DMVYFDI-D--QALGTTTF 72 (186)
T ss_dssp EEEEEEEEECSS-CEEEEEECCTTT-GGGCCTTCEEEET-----TE----EEEEEEEET--TEEEEEE-C--TTTTTSSG
T ss_pred EEEEEEEEECCC-cEEEEEEeChHH-hccCCCCCeEEEe-----eE----EEEEEEEcC--CEEEEEh-H--HhhhhCch
Confidence 467888877654 567889887532 3468899977762 42 456666553 4677777 4 32222346
Q ss_pred ccCCCCCEEEEeccc
Q 042788 136 REMHEGEYLPVKGPK 150 (258)
Q Consensus 136 ~~l~~Gd~v~v~gP~ 150 (258)
..+++||.|.++...
T Consensus 73 g~l~~G~~VNLEral 87 (186)
T 3ddy_A 73 DGLKEGDQVNLEIHP 87 (186)
T ss_dssp GGCCTTCEEEEECCC
T ss_pred hhcCCCCEEEECCCC
Confidence 788999999988554
No 48
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=43.40 E-value=19 Score=26.57 Aligned_cols=65 Identities=11% Similarity=0.048 Sum_probs=42.2
Q ss_pred CCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccccCCCCCEEEEecccc-eee
Q 042788 84 GLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKG-RLK 154 (258)
Q Consensus 84 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G-~f~ 154 (258)
....|..|.+... ..| ..+.|+|....+.+. ..-.|-. ..+..+.|-..++||+|.+..|.| ...
T Consensus 56 ~V~~Gs~V~l~d~-~~g--~~~~~~iVg~~ead~-~~~~IS~--~SPlG~ALlGk~vGD~v~v~~P~G~~~~ 121 (141)
T 2pn0_A 56 VVTMNSTVRFRVE-SSA--EEFCLTLVYPKDVDT-SGEKISI--LAPVGSALLGLAQGDEIEWPKPGGGVLR 121 (141)
T ss_dssp BCCTTCEEEEEET-TTC--CEEEEEEECGGGCCS-SSCEEET--TSTTHHHHTTCBTTCEEEEECTTSSEEE
T ss_pred EEEeCcEEEEEEC-CCC--CEEEEEEECHhHcCc-cCCEEcC--CCHHHHHHcCCCCCCEEEEEcCCCCEEE
Confidence 4688999988643 234 357888877543211 1112222 556666777889999999999999 543
No 49
>2l1t_A Uncharacterized protein; putative C-DI-GMP binding, GSU3033, PILZ, structural genomic biology, protein structure initiative; NMR {Geobacter sulfurreducens}
Probab=40.28 E-value=79 Score=22.24 Aligned_cols=64 Identities=13% Similarity=-0.098 Sum_probs=39.9
Q ss_pred CCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccccCCCCCEEEEecccce
Q 042788 83 LGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGR 152 (258)
Q Consensus 83 ~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~ 152 (258)
.-|.+||-|.+.+| -++....|-.-+.+.-++ +.+.+-.-+ +.=..=-.++.|..+.++...|.
T Consensus 11 ~yF~~gqrv~V~ip-L~~~~~F~dwAiIt~~~~-dli~lqLsr----d~LP~~v~l~~G~~l~v~~~~g~ 74 (109)
T 2l1t_A 11 RYFEQLQKVNLTVR-LGDTGSFDGTAAITSLKG-SLAWLELFG----AEQPPPNTLSEGAEVSVSVWTGG 74 (109)
T ss_dssp GTCCTTCEEEEEEE-ETTTEEEEEEEEEEEEET-TEEEECCSS----SCCCCTTTCCTTCEEEEEEEETT
T ss_pred HhcCCCcEEEEEEE-cCCCCeEcCceEEEEecC-CEEEEEeec----ccCCCceeEecccEEEEEEccCC
Confidence 45899999999999 556566677777665544 344332222 11011125778888888866664
No 50
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=38.83 E-value=17 Score=27.48 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=41.2
Q ss_pred CCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccccCCCCCEEEEecccceeee
Q 042788 84 GLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKY 155 (258)
Q Consensus 84 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~ 155 (258)
....|..|.+.. ..| ..+.|+|+.....+. ..- +.-...+..+.|-..++||.|.+..|.|...+
T Consensus 84 ~V~~Gs~V~l~~--~~g--~~~~y~iVg~~ead~-~~~--~IS~~SPlg~ALlGk~vGD~v~v~~P~G~~~~ 148 (158)
T 2p4v_A 84 KVFFGAWVEIEN--DDG--VTHRFRIVGYDEIFG-RKD--YISIDSPMARALLKKEVGDLAVVNTPAGEASW 148 (158)
T ss_dssp SCSSSCEEEEEC--TTC--CCEEEEBCCSTTCCS-SSC--CBCTTSHHHHHSTTCCTTCEEEEECSSCEEEE
T ss_pred EEeccEEEEEEE--CCC--CEEEEEEECHHHcCc-cCC--eecCCCHHHHHhcCCCCCCEEEEEcCCCcEEE
Confidence 468899888863 223 357898877553211 100 11123445556778899999999999997443
No 51
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=37.53 E-value=61 Score=24.17 Aligned_cols=65 Identities=12% Similarity=0.148 Sum_probs=44.0
Q ss_pred CCCCCcEEEEEEecCCCCeeeeeccccccCC---CCCEEEEEEEEecCCccccccccCCCCCEEEEecccceeee
Q 042788 84 GLPVGQHILCRGKDSEGNEVIRPYTPITLDS---DIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRLKY 155 (258)
Q Consensus 84 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~---~~~~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~ 155 (258)
....|..|.+... ..| ..+.|+++.... ..+. +.|-. ..+..+.|-..++||.|.+..|.|...+
T Consensus 82 ~V~~Gs~V~l~~~-~~~--~~~~~~iVg~~ead~~~~~--~~IS~--~SPlG~ALlGk~~GD~v~~~~p~G~~~~ 149 (156)
T 2f23_A 82 VIGLGSVVELEDP-LSG--ERLSVQVVSPAEANVLDTP--MKISD--ASPMGKALLGHRVGDVLSLDTPKGKREF 149 (156)
T ss_dssp CCCTTCEEEEECT-TTC--CEEEEEEECGGGCBTTSSS--EEEET--TSHHHHHHTTCCTTCEEEEEETTEEEEE
T ss_pred EEEeCcEEEEEEc-CCC--CEEEEEEEChhHcCcCCCC--EEECC--CCHHHHHHcCCCCCCEEEEEcCCCcEEE
Confidence 4688999998743 233 357788776542 2231 23333 6677777878999999999999997443
No 52
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=36.26 E-value=56 Score=27.00 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=37.0
Q ss_pred CceEEEEEcCccHHHHH-HHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHHHHHHhhCCCCeEEEEEEc
Q 042788 160 ARAFGMIAGGTGITPMF-QLTRAILENPKDKTNVHLIYANVTVGDILLKDELDSFATNSPNRFKVYYVLS 228 (258)
Q Consensus 160 ~~~vvliagGtGItp~~-sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL~~l~~~~~~~~~v~~~~s 228 (258)
.+++++..||++...+. .+++.+... .++.++.+.... ..+++++..+++++ +++..+.+
T Consensus 157 ~~~ILv~~GG~d~~~l~~~vl~~L~~~----~~i~vv~G~~~~----~~~~l~~~~~~~~~-v~v~~~~~ 217 (282)
T 3hbm_A 157 KYDFFICMGGTDIKNLSLQIASELPKT----KIISIATSSSNP----NLKKLQKFAKLHNN-IRLFIDHE 217 (282)
T ss_dssp CEEEEEECCSCCTTCHHHHHHHHSCTT----SCEEEEECTTCT----THHHHHHHHHTCSS-EEEEESCS
T ss_pred CCeEEEEECCCchhhHHHHHHHHhhcC----CCEEEEECCCch----HHHHHHHHHhhCCC-EEEEeCHH
Confidence 35677777888765543 345554332 357777766543 36778777766666 77765443
No 53
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=36.22 E-value=1.5e+02 Score=22.91 Aligned_cols=79 Identities=10% Similarity=0.026 Sum_probs=51.0
Q ss_pred EEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccc
Q 042788 55 KEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHH 134 (258)
Q Consensus 55 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~ 134 (258)
..++|.+++.. ++...++|+.|... ..-..++.+|.+ +| =+.|+....+ +.+.+.+-. .-.-..-
T Consensus 104 g~g~i~~i~~~-~~~~~~~i~~p~~l-~~~i~~KgSIav-----dG----vSLTV~~v~~--~~f~v~lIp--~Tl~~T~ 168 (186)
T 3ddy_A 104 GTALVAAIEEN-DAGFSVLIDIPKGL-AENLTVKDDIGI-----DG----ISLPITDMSD--SIITLNYSR--DLLASTN 168 (186)
T ss_dssp EEEEEEEEECC-SSEEEEEEECCTTT-CSCCCTTCEEEE-----TT----EEEECCEEET--TEEEEEEEG--GGGGTSS
T ss_pred EEEEEEEEEEC-CCeEEEEEEcCHHH-hhccccCcEEEE-----Ee----EEEEEEeecC--CEEEEEEcH--HHHhhcc
Confidence 35788888765 46778999988652 233567777765 24 2567777653 456665543 3222234
Q ss_pred cccCCCCCEEEEec
Q 042788 135 FREMHEGEYLPVKG 148 (258)
Q Consensus 135 L~~l~~Gd~v~v~g 148 (258)
|..+++||.|.++-
T Consensus 169 l~~~~~Gd~VNlE~ 182 (186)
T 3ddy_A 169 IASLAKDVKVNVEI 182 (186)
T ss_dssp GGGCCTTCEEEEEE
T ss_pred cccCccCCEEEEEE
Confidence 67899999998874
No 54
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=34.95 E-value=33 Score=22.86 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=14.2
Q ss_pred cCCCCCEEEEecccce
Q 042788 137 EMHEGEYLPVKGPKGR 152 (258)
Q Consensus 137 ~l~~Gd~v~v~gP~G~ 152 (258)
.+.+||.|++-+|.|.
T Consensus 29 ~f~~GD~iEi~~P~g~ 44 (89)
T 4he6_A 29 HFRPGDEVEFFGPEIE 44 (89)
T ss_dssp CBCTTCEEEEESTTSC
T ss_pred CcCCCCEEEEEcCCCC
Confidence 6789999999999993
No 55
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=34.55 E-value=20 Score=26.22 Aligned_cols=65 Identities=12% Similarity=0.105 Sum_probs=40.8
Q ss_pred CCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccccCCCCCEEEEecccc-eee
Q 042788 84 GLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKG-RLK 154 (258)
Q Consensus 84 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G-~f~ 154 (258)
....|..|.+... ..| ..+.|++....+. +...-.|- ...+..+.|-..++||+|.+..|.| ...
T Consensus 53 ~V~~Gs~V~l~~~-~~g--~~~~~~iVg~~ea-d~~~~~IS--~~SPlG~ALlGk~~GD~v~v~~p~G~~~~ 118 (136)
T 3bmb_A 53 VVTMNSRVKFRNL-SDG--EVRVRTLVYPAKM-TDSNTQLS--VMAPVGAALLGLRVGDSIHWELPGGVATH 118 (136)
T ss_dssp BCCTTCEEEEEET-TTC--CEEEEEEECGGGC-CCTTTEEE--TTSHHHHHHTTCBTTCEEEEEETTTEEEE
T ss_pred EEEeCcEEEEEEC-CCC--CEEEEEEEChHHc-CccccEec--CCCHHHHHHcCCCCCCEEEEEcCCCCEEE
Confidence 3678999988643 223 3477888754321 11000122 2455666677889999999999999 543
No 56
>2ew0_A Hypothetical protein aciad0353; Q5FF54, ASR1, NESG, structural genomics, PSI, protein struct initiative; 1.40A {Acinetobacter SP} SCOP: d.310.1.1
Probab=34.36 E-value=21 Score=27.97 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=43.0
Q ss_pred CCEEEEecccce---eeecCC--CCceEEEEEcCccHHHHHHHHHHHHhCCCCCCeEEEEEEeCCCcccccHHHH
Q 042788 141 GEYLPVKGPKGR---LKYKVG--QARAFGMIAGGTGITPMFQLTRAILENPKDKTNVHLIYANVTVGDILLKDEL 210 (258)
Q Consensus 141 Gd~v~v~gP~G~---f~~~~~--~~~~vvliagGtGItp~~sil~~l~~~~~~~~~v~l~~~~r~~~d~~~~~eL 210 (258)
...|.+.||... |.+... ....-+-|..|+.++.-..+++++.... ...++.++.+.-..+.--+.+|+
T Consensus 66 ~~~v~~GGPV~~~rgfvLH~~~~~~~~s~~v~~gv~lt~s~d~l~~i~~~~-~p~~~~~flGYaGW~~GQLe~Ei 139 (192)
T 2ew0_A 66 PHEVLQGGPLRPEAGFVLHTGQPTWHSSIAVGENVCITTSKDILDAIAHNE-GVGRYQIALGYASWGKNQLEDEI 139 (192)
T ss_dssp CCEEEECCSEEEEEEEEEEESCCCSSSEEEEETTEEEECSSHHHHHHHTTC-SCCSEEEEEEEEEECTTHHHHHH
T ss_pred CCeeEECCCcCCCcEEEEEeCCCCCCCceEecCCeeeeCCHHHHHHHhcCC-CCccEEEEEeecCCCHHHHHHHH
Confidence 567999999864 544322 2344577888988888888998887652 33556655554444433344444
No 57
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=33.96 E-value=97 Score=29.14 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=33.8
Q ss_pred CcEEEEEEEEEEeCC-----CEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 53 NFKEFKLTKRTPISH-----NTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 53 ~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
....++|++++.+++ +++.++|+++... ...|+||+++.|...
T Consensus 250 ~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~-~~~Y~~GD~l~V~P~ 297 (688)
T 1tll_A 250 RVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQ-ELQYQPGDHLGVFPG 297 (688)
T ss_dssp CCEEEEEEEEEECSCTTCSSCEEEEEEECTTCG-GGCCCTTCEEEECCC
T ss_pred CceEEEEEeeeecCCCCCCceEEEEEEecCCCC-CCccCCCCEEEEecC
Confidence 445789999999974 5899999986532 378999999999643
No 58
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=33.50 E-value=30 Score=29.48 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=18.3
Q ss_pred ceEEEEEcCccHHHHHHHHHHH
Q 042788 161 RAFGMIAGGTGITPMFQLTRAI 182 (258)
Q Consensus 161 ~~vvliagGtGItp~~sil~~l 182 (258)
.++|.++||||.+-++.-++++
T Consensus 5 ~~IV~igGGtGl~~ll~gLk~~ 26 (326)
T 2q7x_A 5 PXITVIGGGTGSPVILXSLREX 26 (326)
T ss_dssp CEEEEECCCTTHHHHHHHHHHS
T ss_pred CeEEEEcCcccHHHHHHHhccC
Confidence 5799999999999877777654
No 59
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=32.27 E-value=1.2e+02 Score=21.36 Aligned_cols=86 Identities=12% Similarity=0.107 Sum_probs=49.8
Q ss_pred CcEEEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccc
Q 042788 53 NFKEFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMA 132 (258)
Q Consensus 53 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S 132 (258)
+.+.++|+..+.--.+- +++...- -+..+..|++.|.+.-. .+| ...-.|.|...... |.+.+ +|...
T Consensus 12 KIHratVT~a~L~Y~GS--itID~~L-l~aA~i~~~E~V~I~Nv-nNG-~Rf~TYvI~GerGS-g~I~l------NGAAA 79 (114)
T 3oug_A 12 KISYATVTGKDLFYVGS--ITIDSEI-MKQANIIENEKVQVVNL-NNG-ERLETYVIKGEPNS-KTIAL------NGPAA 79 (114)
T ss_dssp EEEEEECCEEESSCC-C--EEEEHHH-HHHTTCCTTBEEEEEET-TTC-CEEEEEEEEECTTS-CCEEE------EGGGG
T ss_pred hhcceEEecccccccce--EEECHHH-HHHcCCCcCCEEEEEEC-CCC-ceEEEEEEEccCCC-CEEEe------CCHHH
Confidence 44566666665544444 3443211 12477899999988533 344 44667877664432 43322 45544
Q ss_pred cccccCCCCCEEEEecccceee
Q 042788 133 HHFREMHEGEYLPVKGPKGRLK 154 (258)
Q Consensus 133 ~~L~~l~~Gd~v~v~gP~G~f~ 154 (258)
+..++||.|-+-. |+.+.
T Consensus 80 ---r~~~~GD~vII~a-y~~~~ 97 (114)
T 3oug_A 80 ---RRCEIGDQLFIIS-YTQVD 97 (114)
T ss_dssp ---GGCCTTCEEEEEE-EEEEC
T ss_pred ---hccCCCCEEEEEE-CCcCC
Confidence 3568999998875 66654
No 60
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=30.65 E-value=15 Score=27.77 Aligned_cols=64 Identities=13% Similarity=0.225 Sum_probs=37.1
Q ss_pred CCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCccccccccCCCCCEEEEeccccee
Q 042788 84 GLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHFREMHEGEYLPVKGPKGRL 153 (258)
Q Consensus 84 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f 153 (258)
....|..|.+... ..+ ..+.|+|+..... +...-.|-. ..+..+.|-..++||.|.+..|.|..
T Consensus 85 ~V~~Gs~V~l~~~-~~~--~~~~y~iVg~~ea-d~~~~~IS~--~SPlG~ALlGk~~GD~v~v~~p~G~~ 148 (158)
T 1grj_A 85 RVIFGATVTVLNL-DSD--EEQTYRIVGDDEA-DFKQNLISV--NSPIARGLIGKEEDDVVVIKTPGGEV 148 (158)
T ss_dssp BCCTTCEEEEEET-TTT--EEEEEEEECTTTC-BGGGTEEES--SSHHHHHHTTCBTTCEECC------C
T ss_pred EEEeCcEEEEEEC-CCC--CEEEEEEECHHHh-CCcCCEEcC--CCHHHHHHcCCCCCCEEEEEcCCCcE
Confidence 4688999998643 223 4688998865432 211112222 55666677788999999999999974
No 61
>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} SCOP: b.43.4.3 b.43.4.3
Probab=30.33 E-value=1.8e+02 Score=22.93 Aligned_cols=79 Identities=10% Similarity=0.072 Sum_probs=48.5
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF 135 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L 135 (258)
..+|.+++.....-.+++++ +.. .......|+.|.+. |- ..|+....+ +.|.+.+-. .-.--.-|
T Consensus 9 vG~V~~i~~~~~~~~~l~i~-~~~-~~~~l~~g~SIAvn-----Gv----cLTV~~~~~--~~F~vdvip--ETl~~T~L 73 (208)
T 1kzl_A 9 IGVVKDVQGTIDNGFAMKIE-APQ-ILDDCHTGDSIAVN-----GT----CLTVTDFDR--YHFTVGIAP--ESLRLTNL 73 (208)
T ss_dssp EEEEEEEEEETTTEEEEEEE-CGG-GCTTCCTTCEEEET-----TE----EEEEEEECS--SEEEEEECH--HHHHHSSG
T ss_pred EEEEEEEEECCCceEEEEEe-chH-HhcccCCCCEEEEC-----CE----EeeEEEEcC--CEEEEEEeH--HHHhhccc
Confidence 46788888765436678888 332 12467899987762 42 456776653 345554432 21111236
Q ss_pred ccCCCCCEEEEecc
Q 042788 136 REMHEGEYLPVKGP 149 (258)
Q Consensus 136 ~~l~~Gd~v~v~gP 149 (258)
..+++||.|.++..
T Consensus 74 g~l~~Gd~VNLEra 87 (208)
T 1kzl_A 74 GQCKAGDPVNLERA 87 (208)
T ss_dssp GGCCTTCEEEEEEC
T ss_pred cccCCCCEEEeccC
Confidence 67899999999844
No 62
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=30.23 E-value=29 Score=29.76 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=18.7
Q ss_pred CceEEEEEcCccHHHHHHHHHHH
Q 042788 160 ARAFGMIAGGTGITPMFQLTRAI 182 (258)
Q Consensus 160 ~~~vvliagGtGItp~~sil~~l 182 (258)
..++|.++||||.+-++.=++.+
T Consensus 10 ~~kIVvigGGtGl~~ll~gLk~~ 32 (341)
T 2p0y_A 10 RPKIVVIGGGTGLPVVLNGLRKQ 32 (341)
T ss_dssp CCEEEEECCGGGHHHHHHHHHHS
T ss_pred CCeEEEECCcccHHHHHHHHHhC
Confidence 46899999999999877666654
No 63
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=27.35 E-value=29 Score=26.66 Aligned_cols=48 Identities=27% Similarity=0.396 Sum_probs=25.3
Q ss_pred EEEEEEEecCCccccccc--cCCCC--CEEEEecccceeeecCCCCceEEEEEcCccH
Q 042788 119 FELVVKMYPKGRMAHHFR--EMHEG--EYLPVKGPKGRLKYKVGQARAFGMIAGGTGI 172 (258)
Q Consensus 119 l~~~Vk~~~~G~~S~~L~--~l~~G--d~v~v~gP~G~f~~~~~~~~~vvliagGtGI 172 (258)
+.+.++..+....-+|-. ++--| -.|.+.|||=.+ .+..+-|.|||||
T Consensus 70 ~Cv~~~~~p~~~gdryE~tyS~yfgd~GhISvQGpy~t~------~Dt~LAITGGTGi 121 (188)
T 2brj_A 70 LCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTY------EDSFLAITGGAGI 121 (188)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECGGGEEEEEEEEEETT------BCEEEEEEEEEET
T ss_pred EEEEEEecCCCCCcEEEEEEEEEeCCCceEEEecccccc------ccceeeEecCcce
Confidence 555666544333333321 22222 345555554333 3456899999998
No 64
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=27.20 E-value=40 Score=28.21 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=25.2
Q ss_pred EEEEEEEEEeCC---C--EeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 56 EFKLTKRTPISH---N--TAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 56 ~~~v~~~~~~~~---~--~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
.++|..+....+ + .+.+++..+.+. ..+.||+++.+.+.
T Consensus 226 ~g~V~~i~~~~~~~~~~~~~~v~i~~~~~~--~~l~~G~~~~v~i~ 269 (341)
T 3fpp_A 226 EGQIKDVLPTPEKVNDAIFYYARFEVPNPN--GLLRLDMTAQVHIQ 269 (341)
T ss_dssp CCCEEEECSSCCBSSSCBCCEEEEEEECSS--SCCCTTCEEEEEEE
T ss_pred EEEEEEEecCccccCceEEEEEEEEeCCCc--cccCCCCEEEEEEE
Confidence 677777655322 1 235566555442 45899999999987
No 65
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=24.96 E-value=66 Score=24.44 Aligned_cols=94 Identities=12% Similarity=0.157 Sum_probs=44.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhhc-------cCCCCCCCCCC------cEEEEEEEEEEeCCCEeEEEEECCCCC-
Q 042788 15 QVSQAAFFGLLVAVAAMIITIAVYLCSI-------KKSRGSLDPEN------FKEFKLTKRTPISHNTAKFRFALPKST- 80 (258)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~l~~~~~~- 80 (258)
-+.+++|+.+.++.+++.++++.|-... +......+|.+ |..-- ..+++..++.+.+.+...+..
T Consensus 12 ~~~e~~w~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~idp~~~~~~~~f~~pg-~a~~~~~~~~v~V~m~a~~~~f 90 (168)
T 3s8f_B 12 LAYEKGWLAFSLAMLFVFIALIAYTLATHTAGVIPAGKLERVDPTTVRQEGPWADPA-QAVVQTGPNQYTVYVLAFAFGY 90 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSGGGGGSCCCSCCBCCTTTTTTSSTTSCGG-GCEEEEETTEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCcCCCccCccChhhhccccccCCCC-cccccCCCCeEEEEEEEEeceE
Confidence 4567788877777777666555542221 11111222211 11000 002222344444544432110
Q ss_pred --ccCCCCCCcEEEEEEecCCCCeeeeecccccc
Q 042788 81 --SILGLPVGQHILCRGKDSEGNEVIRPYTPITL 112 (258)
Q Consensus 81 --~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~ 112 (258)
.....+.|+.|.+.+.+ ....|.|++-+.
T Consensus 91 ~Pn~l~VP~G~~Vr~~vTS---~DViHsf~IP~l 121 (168)
T 3s8f_B 91 QPNPIEVPQGAEIVFKITS---PDVIHGFHVEGT 121 (168)
T ss_dssp ESSSEEEETTSEEEEEEEC---SSSCEEEEETTS
T ss_pred ecCEEEEeCCCeEEEEEec---CCceEEEEECCC
Confidence 12446678888887762 346688877543
No 66
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=24.87 E-value=1.3e+02 Score=28.15 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=31.4
Q ss_pred EEEEEEEEEeC----CCEeEEEEECCCCCccCCCCCCcEEEEEEe
Q 042788 56 EFKLTKRTPIS----HNTAKFRFALPKSTSILGLPVGQHILCRGK 96 (258)
Q Consensus 56 ~~~v~~~~~~~----~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~ 96 (258)
.++|++.+.++ .+++.++|+++.. ...|+||+++.|...
T Consensus 261 ~a~v~~~~~L~~~~~~~~~hie~d~~~~--~~~Y~~GD~l~V~P~ 303 (682)
T 2bpo_A 261 IAPIVKSRELFSSNDRNCIHSEFDLSGS--NIKYSTGDHLAVWPS 303 (682)
T ss_dssp CEEEEEEEECCCCSSCCEEEEEEECTTB--TCCCCTTCEEEECCC
T ss_pred EEEEEEEEEccCCCCCCEEEEEEEcCCC--CceecCCCEEEEEcC
Confidence 57899999886 3689999998754 488999999999643
No 67
>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} SCOP: b.43.4.3 b.43.4.3 PDB: 1hze_A* 1i18_A* 1pkv_A*
Probab=23.51 E-value=2.4e+02 Score=22.26 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=49.4
Q ss_pred EEEEEEEEEeCCCEeEEEEECCCCCccCCCCCCcEEEEEEecCCCCeeeeeccccccCCCCCEEEEEEEEecCCcccccc
Q 042788 56 EFKLTKRTPISHNTAKFRFALPKSTSILGLPVGQHILCRGKDSEGNEVIRPYTPITLDSDIGYFELVVKMYPKGRMAHHF 135 (258)
Q Consensus 56 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~l~~~Vk~~~~G~~S~~L 135 (258)
.++|.+++.. ++-.+++++.|... ......|+.|.+. |- ..|+....+ +.|.+.+-. .-.--.-|
T Consensus 9 vG~V~~i~~~-~~~~~l~i~~~~~~-~~~l~~g~SIAvn-----Gv----cLTV~~v~~--~~F~vdvip--ETl~~T~L 73 (213)
T 1i8d_A 9 TAKLVSIDEK-PNFRTHVVELPDHM-LDGLETGASVAHN-----GC----CLTVTEING--NHVSFDLMK--ETLRITNL 73 (213)
T ss_dssp EEEEEEEEEC-SSEEEEEEECCGGG-TTTCCTTCEEEET-----TE----EEEEEEEET--TEEEEEEEH--HHHHHSGG
T ss_pred EEEEEEEEEC-CCcEEEEEEEChHH-hccCCCCcEEEEC-----CE----EeeEEEEcC--CEEEEEEeH--HHHhhccc
Confidence 4678888765 45667888877431 2457899987762 42 446666543 356655543 21111235
Q ss_pred ccCCCCCEEEEeccc
Q 042788 136 REMHEGEYLPVKGPK 150 (258)
Q Consensus 136 ~~l~~Gd~v~v~gP~ 150 (258)
..+++||.|.++...
T Consensus 74 g~l~~Gd~VNLEral 88 (213)
T 1i8d_A 74 GDLKVGDWVNVERAA 88 (213)
T ss_dssp GGCCTTCEEEEEECC
T ss_pred ccCCCCCEEEeCcCC
Confidence 678999999988544
No 68
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=23.36 E-value=40 Score=28.68 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=16.8
Q ss_pred CceEEEEEcCccHHHHHHHHH
Q 042788 160 ARAFGMIAGGTGITPMFQLTR 180 (258)
Q Consensus 160 ~~~vvliagGtGItp~~sil~ 180 (258)
..+++.++||+|.+-++.-++
T Consensus 4 ~~kiv~lgGGtGl~~ll~gL~ 24 (323)
T 2o2z_A 4 KKNVIVFGGGTGLSVLLRGLK 24 (323)
T ss_dssp CEEEEEEECSHHHHHHHHHHT
T ss_pred CCeEEEECCcccHHHHHHHHH
Confidence 358999999999997666554
No 69
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=20.39 E-value=3.1e+02 Score=21.35 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=16.6
Q ss_pred ceEEEEEcCc---cHHHHHHHHHHHHhCC
Q 042788 161 RAFGMIAGGT---GITPMFQLTRAILENP 186 (258)
Q Consensus 161 ~~vvliagGt---GItp~~sil~~l~~~~ 186 (258)
++.++|.||+ ||. .++++.+.+++
T Consensus 14 ~k~vlITGa~~~~giG--~~ia~~l~~~G 40 (271)
T 3ek2_A 14 GKRILLTGLLSNRSIA--YGIAKACKREG 40 (271)
T ss_dssp TCEEEECCCCSTTSHH--HHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCcHH--HHHHHHHHHcC
Confidence 4445666654 887 57888888875
Done!