BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042790
         (617 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3BIC|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Mutase
 pdb|3BIC|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Mutase
 pdb|2XIJ|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Mutase In
           Complex With Adenosylcobalamin
 pdb|2XIQ|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Mutase In
           Complex With Adenosylcobalamin And Malonyl-Coa
 pdb|2XIQ|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Mutase In
           Complex With Adenosylcobalamin And Malonyl-Coa
          Length = 762

 Score = 30.4 bits (67), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/56 (23%), Positives = 30/56 (53%)

Query: 434 NQLVQTAQKYESTIYSGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPK 489
           N +V+TA +  + ++ G+     ++      +  V   ++ARNT++ + ++ G PK
Sbjct: 355 NNIVRTAIEAMAAVFGGTQSLHTNSFDEALGLPTVKSARIARNTQIIIQEESGIPK 410


>pdb|1U32|A Chain A, Crystal Structure Of A Protein Phosphatase-1: Calcineurin
           Hybrid Bound To Okadaic Acid
          Length = 293

 Score = 28.9 bits (63), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 13/87 (14%)

Query: 519 IESLKNYCCEASGSKPLKDESLEKRSAQDLLNDGRKLVAASPILDNSENDSSSFTGCGPL 578
           I+S+     E  GSKP K+  L++   + L    R++  + PIL   E          PL
Sbjct: 4   IDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELE---------APL 54

Query: 579 ASCEGATLSPGYYE--RLLRHNSFNPK 603
             C    +   YY+  RL  +  F P+
Sbjct: 55  KIC--GDIHGQYYDLLRLFEYGGFPPE 79


>pdb|2O8A|A Chain A, Rat Pp1cgamma Complexed With Mouse Inhibitor-2
 pdb|2O8A|B Chain B, Rat Pp1cgamma Complexed With Mouse Inhibitor-2
 pdb|2O8G|A Chain A, Rat Pp1c Gamma Complexed With Mouse Inhibitor-2
 pdb|2O8G|B Chain B, Rat Pp1c Gamma Complexed With Mouse Inhibitor-2
          Length = 329

 Score = 28.9 bits (63), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 13/87 (14%)

Query: 519 IESLKNYCCEASGSKPLKDESLEKRSAQDLLNDGRKLVAASPILDNSENDSSSFTGCGPL 578
           I+S+     E  GSKP K+  L++   + L    R++  + PIL   E          PL
Sbjct: 15  IDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELE---------APL 65

Query: 579 ASCEGATLSPGYYE--RLLRHNSFNPK 603
             C    +   YY+  RL  +  F P+
Sbjct: 66  KIC--GDIHGQYYDLLRLFEYGGFPPE 90


>pdb|1JK7|A Chain A, Crystal Structure Of The Tumor-Promoter Okadaic Acid Bound
           To Protein Phosphatase-1
 pdb|1IT6|A Chain A, Crystal Structure Of The Complex Between Calyculin A And
           The Catalytic Subunit Of Protein Phosphatase 1
 pdb|1IT6|B Chain B, Crystal Structure Of The Complex Between Calyculin A And
           The Catalytic Subunit Of Protein Phosphatase 1
 pdb|2BCD|A Chain A, X-Ray Crystal Structure Of Protein Phosphatase-1 With The
           Marine Toxin Motuporin Bound
 pdb|2BDX|A Chain A, X-Ray Crystal Structure Of Dihydromicrocystin-La Bound To
           Protein Phosphatase-1
          Length = 323

 Score = 28.9 bits (63), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 13/87 (14%)

Query: 519 IESLKNYCCEASGSKPLKDESLEKRSAQDLLNDGRKLVAASPILDNSENDSSSFTGCGPL 578
           I+S+     E  GSKP K+  L++   + L    R++  + PIL   E          PL
Sbjct: 9   IDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELE---------APL 59

Query: 579 ASCEGATLSPGYYE--RLLRHNSFNPK 603
             C    +   YY+  RL  +  F P+
Sbjct: 60  KIC--GDIHGQYYDLLRLFEYGGFPPE 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,814,416
Number of Sequences: 62578
Number of extensions: 581006
Number of successful extensions: 1233
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1231
Number of HSP's gapped (non-prelim): 13
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)