BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042790
(617 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W234|SEUSS_ARATH Transcriptional corepressor SEUSS OS=Arabidopsis thaliana GN=SEU
PE=1 SV=1
Length = 877
Score = 327 bits (837), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 156/297 (52%), Positives = 201/297 (67%), Gaps = 6/297 (2%)
Query: 251 PAAYALHSGVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGH 310
P G+ ++R+ QYMY +HRP +N I +WRKFVAEY+AP AKKRWC SMY +G
Sbjct: 296 PLKPVYEPGMGAQRLTQYMYRQQHRPEDNNIEFWRKFVAEYFAPNAKKRWCVSMYG-SGR 354
Query: 311 HAFGFFPKAAVDAWQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERV 370
G FP+ D W C++C KPGRGFEA E PRL K+ +ESG ++ELLY+DMP E
Sbjct: 355 QTTGVFPQ---DVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTLEELLYVDMPRESQ 411
Query: 371 QFSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLVA 430
SG ++LEY KA QE+VFE RVVR+G+LRIVF+PDLKI SWEFCA +HEE +PR L+
Sbjct: 412 NSSGQIVLEYAKATQESVFEHLRVVRDGQLRIVFSPDLKIFSWEFCARRHEELIPRRLLI 471
Query: 431 PQVNQL-VQTAQKYESTIYSGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDDLGFPK 489
PQV+QL + ++ + +D A P LQ NCNMF+ + QLA+ E+ LV+DLG+ K
Sbjct: 472 PQVSQLGSAAQKYQQAAQNATTDSALPE-LQNNCNMFVASARQLAKALEVPLVNDLGYTK 530
Query: 490 RYVRSLQIAEIVNSMKDLISFSLNSNTGPIESLKNYCCEASGSKPLKDESLEKRSAQ 546
RYVR LQI+E+VNSMKDLI +S + TGPIESL + S L S ++ S Q
Sbjct: 531 RYVRCLQISEVVNSMKDLIDYSRETRTGPIESLAKFPRRTGPSSALPGPSPQQASDQ 587
>sp|O74364|ADN1_SCHPO Adhesion defective protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=adn1 PE=3 SV=1
Length = 391
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 103/283 (36%), Gaps = 51/283 (18%)
Query: 259 GVCSRRIMQYMYHLR---HRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGF 315
G R++QY L ++ I YWR+FV ++Y R+ D+
Sbjct: 18 GYGVLRLLQYNEQLMSGWESTMKDDIGYWRRFVHDFYTEKGTFRYNIDYKDSPNQE---- 73
Query: 316 FPKAAVDAWQCDLCGTKPGRGFEANLEAFPR---------LNKVMFESGVIDELLYLDMP 366
PK FE + A PR L K+ F G E +
Sbjct: 74 -PKL-----------------FELSYAALPRFLYLSYCGKLKKMSFLLGNTKEFAIPNNG 115
Query: 367 HERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIVF--TPDLKILSWEFCAWQHEEFL 424
+ ++ +Y VQ V+ G LR F P LK+ S EF A H E+L
Sbjct: 116 YFVESSRASILYQYQGGVQ--------VIVSGHLRAHFFRAPLLKLDSLEFSAVGHSEYL 167
Query: 425 PRNLVAPQVNQLVQTAQKYESTIYSGSDGATPHNLQANCNMFLVAGCQLARNTELDLVDD 484
R L+ L Q+ + G P + N N + V++
Sbjct: 168 LRELMTNASLALSQSRPPQNQIQHDGVKSEDPSSESVNIN-------SSSSLLPDSPVNE 220
Query: 485 LGFPKRYVRSLQIAEIVNSMKDLISFSLNSNTGPIESLKNYCC 527
G +R ++I E ++ M+DLI+F+L +GP +L +
Sbjct: 221 YGLEPHIMRFMEITETISGMRDLIAFTLAQRSGPTSALHKFAT 263
>sp|Q1EQW7|LDB2_XENLA LIM domain-binding protein 2 OS=Xenopus laevis GN=ldb2 PE=2 SV=1
Length = 398
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 70/187 (37%), Gaps = 51/187 (27%)
Query: 264 RIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDA 323
RI + L+ R ++ +W F E++ A F + D + G
Sbjct: 31 RIYEMNKRLQTRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIG--------- 81
Query: 324 WQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSG--------- 374
PR +FE GV D LY + H + +
Sbjct: 82 -----------------RTLIPRYFSTVFEGGVTD--LYYILKHSKESYHNSSITVDCDQ 122
Query: 375 -LMILEYGKAVQETVFEQCRVVREGKLRIVFTPD--LKILSWEFCAWQHEEFLPRNLVA- 430
M+ ++GK + +V EG+L + FT D ++I +W F Q+ E LPR+++A
Sbjct: 123 CTMVTQHGKPMF------TKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELLPRSILAM 176
Query: 431 ----PQV 433
PQV
Sbjct: 177 HAQDPQV 183
>sp|O43679|LDB2_HUMAN LIM domain-binding protein 2 OS=Homo sapiens GN=LDB2 PE=1 SV=1
Length = 373
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 51/187 (27%)
Query: 264 RIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDA 323
RI + L+ R ++ +W F E++ A F + D + G
Sbjct: 31 RIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIG--------- 81
Query: 324 WQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSG--------- 374
PR +FE GV D LY + H + +
Sbjct: 82 -----------------RTLIPRYFSTVFEGGVTD--LYYILKHSKESYHNSSITVDCDQ 122
Query: 375 -LMILEYGKAVQETVFEQCRVVREGKLRIVFTPD--LKILSWEFCAWQHEEFLPRNLVA- 430
M+ ++GK + +V EG+L + FT D ++I +W F Q+ E +PR+++A
Sbjct: 123 CTMVTQHGKPMF------TKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAM 176
Query: 431 ----PQV 433
PQV
Sbjct: 177 HAQDPQV 183
>sp|O55203|LDB2_MOUSE LIM domain-binding protein 2 OS=Mus musculus GN=Ldb2 PE=1 SV=2
Length = 373
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 51/187 (27%)
Query: 264 RIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDA 323
RI + L+ R ++ +W F E++ A F + D + G
Sbjct: 31 RIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIG--------- 81
Query: 324 WQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSG--------- 374
PR +FE GV D LY + H + +
Sbjct: 82 -----------------RTLIPRYFSTVFEGGVTD--LYYILKHSKESYHNSSITVDCDQ 122
Query: 375 -LMILEYGKAVQETVFEQCRVVREGKLRIVFTPD--LKILSWEFCAWQHEEFLPRNLVA- 430
M+ ++GK + +V EG+L + FT D ++I +W F Q+ E +PR+++A
Sbjct: 123 CAMVTQHGKPMF------TKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAM 176
Query: 431 ----PQV 433
PQV
Sbjct: 177 HAQDPQV 183
>sp|Q86U70|LDB1_HUMAN LIM domain-binding protein 1 OS=Homo sapiens GN=LDB1 PE=1 SV=2
Length = 411
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 46/179 (25%)
Query: 264 RIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDA 323
RI + L++ E +W F E++ A F + D + G
Sbjct: 70 RIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIG--------- 120
Query: 324 WQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQF----------S 373
PR + +FE G + LY + H + F
Sbjct: 121 -----------------RTLIPRYFRSIFEGGATE--LYYVLKHPKEAFHSNFVSLDCDQ 161
Query: 374 GLMILEYGKAVQETVFEQCRVVREGKLRIVFTPD--LKILSWEFCAWQHEEFLPRNLVA 430
G M+ ++GK + F Q V EG+L + F D ++I +W F QH E +PR+++A
Sbjct: 162 GSMVTQHGKPM----FTQ--VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILA 214
>sp|P70662|LDB1_MOUSE LIM domain-binding protein 1 OS=Mus musculus GN=Ldb1 PE=1 SV=2
Length = 411
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 46/179 (25%)
Query: 264 RIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDA 323
RI + L++ E +W F E++ A F + D + G
Sbjct: 70 RIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIG--------- 120
Query: 324 WQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQF----------S 373
PR + +FE G + LY + H + F
Sbjct: 121 -----------------RTLIPRYFRSIFEGGATE--LYYVLKHPKEAFHSNFVSLDCDQ 161
Query: 374 GLMILEYGKAVQETVFEQCRVVREGKLRIVFTPD--LKILSWEFCAWQHEEFLPRNLVA 430
G M+ ++GK + F Q V EG+L + F D ++I +W F QH E +PR+++A
Sbjct: 162 GSMVTQHGKPM----FTQ--VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILA 214
>sp|Q9W676|LDB2_CHICK LIM domain-binding protein 2 OS=Gallus gallus GN=LDB2 PE=2 SV=1
Length = 371
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 69/187 (36%), Gaps = 51/187 (27%)
Query: 264 RIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDA 323
RI + L+ R ++ +W F E++ A F + D + G
Sbjct: 31 RIYEMNKRLQARSEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIG--------- 81
Query: 324 WQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSG--------- 374
PR +FE GV D LY + H + +
Sbjct: 82 -----------------RTLIPRYFSTVFEGGVTD--LYYILKHSKESYHNSSITVDCDQ 122
Query: 375 -LMILEYGKAVQETVFEQCRVVREGKLRIVFTPD--LKILSWEFCAWQHEEFLPRNLVA- 430
M+ ++GK + +V EG+L + FT D ++I +W F Q+ E +PR+++
Sbjct: 123 CTMVTQHGKPMF------TKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILPM 176
Query: 431 ----PQV 433
PQV
Sbjct: 177 HAQDPQV 183
>sp|Q6NVL6|LDB1_XENTR LIM domain-binding protein 1 OS=Xenopus tropicalis GN=ldb1 PE=2
SV=1
Length = 373
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 42/177 (23%)
Query: 264 RIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDA 323
RI + L++ E +W F E++ A F + D + G
Sbjct: 34 RIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIG--------- 84
Query: 324 WQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQ--FSGL------ 375
PR + +FE G + L P E F L
Sbjct: 85 -----------------RTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCT 127
Query: 376 MILEYGKAVQETVFEQCRVVREGKLRIVFTPD--LKILSWEFCAWQHEEFLPRNLVA 430
M+ ++GK + F Q V EG+L + F D ++I +W F QH E +PR+++A
Sbjct: 128 MVTQHGKPM----FTQ--VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILA 178
>sp|O42252|LDB1_CHICK LIM domain-binding protein 1 OS=Gallus gallus GN=LDB1 PE=2 SV=1
Length = 411
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 42/177 (23%)
Query: 264 RIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDA 323
RI + L++ E +W F E++ A F + D + G
Sbjct: 70 RIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIG--------- 120
Query: 324 WQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQ--FSGL------ 375
PR + +FE G + L P E F L
Sbjct: 121 -----------------RTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCT 163
Query: 376 MILEYGKAVQETVFEQCRVVREGKLRIVFTPD--LKILSWEFCAWQHEEFLPRNLVA 430
M+ ++GK + F Q V EG+L + F D ++I +W F QH E +PR+++A
Sbjct: 164 MVTQHGKPM----FTQ--VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILA 214
>sp|P70060|LDB1_XENLA LIM domain-binding protein 1 OS=Xenopus laevis GN=ldb1 PE=1 SV=2
Length = 375
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 42/177 (23%)
Query: 264 RIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDA 323
RI + L++ E +W F E++ A F + D + G
Sbjct: 34 RIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIG--------- 84
Query: 324 WQCDLCGTKPGRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQ--FSGL------ 375
PR + +FE G + L P E F L
Sbjct: 85 -----------------RTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCT 127
Query: 376 MILEYGKAVQETVFEQCRVVREGKLRIVFTPD--LKILSWEFCAWQHEEFLPRNLVA 430
M+ ++GK + F Q V EG+L + F D ++I +W F QH E +PR+++A
Sbjct: 128 MVTQHGKPM----FTQ--VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILA 178
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,000,168
Number of Sequences: 539616
Number of extensions: 9233105
Number of successful extensions: 31035
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 225
Number of HSP's that attempted gapping in prelim test: 29531
Number of HSP's gapped (non-prelim): 1217
length of query: 617
length of database: 191,569,459
effective HSP length: 124
effective length of query: 493
effective length of database: 124,657,075
effective search space: 61455937975
effective search space used: 61455937975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)