Query 042790
Match_columns 617
No_of_seqs 128 out of 180
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 16:39:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iot_A Maltose-binding protein 56.4 2.9 9.9E-05 43.4 0.7 8 215-222 380-387 (449)
2 4b8c_D Glucose-repressible alc 38.9 4.7 0.00016 45.3 -1.1 6 396-401 375-380 (727)
3 2hew_F Tumor necrosis factor l 19.5 2.6E+02 0.009 26.1 7.0 42 373-429 45-86 (152)
4 3osr_A Maltose-binding peripla 16.7 4.6E+02 0.016 29.2 9.7 34 496-529 618-651 (653)
5 1nwd_B GAD, glutamate decarbox 15.1 69 0.0023 21.9 1.5 11 280-290 14-24 (28)
6 1uxx_X Xylanase U; carbohydrat 8.9 2.3E+02 0.0078 24.9 3.3 20 399-418 110-129 (133)
7 2zo6_A CYAN-emitting GFP-like 8.7 4E+02 0.014 27.0 5.3 82 335-430 95-181 (252)
8 1ltl_A DNA replication initiat 8.5 1.6E+02 0.0055 29.3 2.4 84 312-404 123-228 (279)
9 1uy4_A Endo-1,4-beta-xylanase 8.0 2.6E+02 0.0089 25.1 3.4 18 399-416 125-142 (145)
10 2wur_A Green fluorescent prote 7.2 6.1E+02 0.021 25.5 5.8 63 344-418 76-146 (236)
No 1
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=56.36 E-value=2.9 Score=43.40 Aligned_cols=8 Identities=25% Similarity=0.040 Sum_probs=3.3
Q ss_pred HhhhhccC
Q 042790 215 QQNILHST 222 (617)
Q Consensus 215 ~~~~~~~~ 222 (617)
+||-++.+
T Consensus 380 ~~~~~~~~ 387 (449)
T 3iot_A 380 AFESLKSF 387 (449)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 33334444
No 2
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=38.91 E-value=4.7 Score=45.30 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred EeEEEE
Q 042790 396 REGKLR 401 (617)
Q Consensus 396 ~~G~LR 401 (617)
..|.|.
T Consensus 375 ~~~~l~ 380 (727)
T 4b8c_D 375 EYDSLQ 380 (727)
T ss_dssp ------
T ss_pred ccCCcc
Confidence 334443
No 3
>2hew_F Tumor necrosis factor ligand superfamily member 4; trimer, TNFSF, cytokine; HET: NAG; 1.45A {Mus musculus} SCOP: b.22.1.1 PDB: 2hey_F
Probab=19.47 E-value=2.6e+02 Score=26.15 Aligned_cols=42 Identities=10% Similarity=0.227 Sum_probs=31.6
Q ss_pred CCcEEEEeCceEEEEEecCeEEEEeEEEEEEeCcccceeEEEEEeeceeecccccch
Q 042790 373 SGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEFLPRNLV 429 (617)
Q Consensus 373 NG~ivlE~~KAs~iy~YdGs~Vv~~G~LR~~F~~dLKIEs~EF~~~~HeEyIpR~~L 429 (617)
|++++|.|+ |.+++ .||+.|+.+++| +|+.|..+|.+.-..|
T Consensus 45 nNSviI~CD---------GfYLi---sLKG~fSqe~sI---~l~YRk~~~plf~~~L 86 (152)
T 2hew_F 45 NNSVVIKCD---------GLYII---YLKGSFFQEVKI---DLHFREDHNPISIPML 86 (152)
T ss_dssp TTEEECCBC---------EEEEE---EEEEEESSCCCE---EEECCTTSCCEEECCC
T ss_pred cCeEEEecC---------ceEEE---EEEEeeccccEE---EEEEecCCCccchhhh
Confidence 778888884 55554 489999999987 5789999887654444
No 4
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli}
Probab=16.74 E-value=4.6e+02 Score=29.18 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=30.9
Q ss_pred HHHHHHhchHHHHHHhHhcCCCHHHHHHHHHhhh
Q 042790 496 QIAEIVNSMKDLISFSLNSNTGPIESLKNYCCEA 529 (617)
Q Consensus 496 QIsEVmsqMkdLM~FSk~n~lSP~EALk~yv~~~ 529 (617)
|+++|=.+|.++..+-...+..|-+||+..+.++
T Consensus 618 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (653)
T 3osr_A 618 QMSAFWYAVRTAVINAASGRQTVDEDLKDAQTRI 651 (653)
T ss_dssp THHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 5789999999999999998889999999998876
No 5
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=15.15 E-value=69 Score=21.88 Aligned_cols=11 Identities=55% Similarity=0.999 Sum_probs=9.2
Q ss_pred chhHHHHHHHH
Q 042790 280 GIAYWRKFVAE 290 (617)
Q Consensus 280 dIeYWqkFV~E 290 (617)
-|.-|.+||+|
T Consensus 14 mitawkkfvee 24 (28)
T 1nwd_B 14 MITAWKKFVEE 24 (28)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46789999987
No 6
>1uxx_X Xylanase U; carbohydrate binding module, CBM6, xylopentaose binding, xylan degradation; HET: XYP; 1.6A {Clostridium thermocellum} SCOP: b.18.1.10 PDB: 1gmm_A*
Probab=8.95 E-value=2.3e+02 Score=24.93 Aligned_cols=20 Identities=25% Similarity=0.301 Sum_probs=17.0
Q ss_pred EEEEEeCcccceeEEEEEee
Q 042790 399 KLRIVFTPDLKILSWEFCAW 418 (617)
Q Consensus 399 ~LR~~F~~dLKIEs~EF~~~ 418 (617)
.|++.|...+.|+||+|...
T Consensus 110 ~l~l~f~G~~nl~~~~f~~~ 129 (133)
T 1uxx_X 110 DLYLVFSGPVNIDYFIFDSN 129 (133)
T ss_dssp EEEEEESSCCEEEEEEEECC
T ss_pred EEEEEEECCcEEEEEEEEcC
Confidence 67788888899999999754
No 7
>2zo6_A CYAN-emitting GFP-like protein, kusabira-CYAN (KC; luminescent protein, structural genomics, structural genomics/proteomics initiative, RSGI; HET: GYS; 1.40A {Fungia concinna} PDB: 2zo7_A*
Probab=8.71 E-value=4e+02 Score=26.98 Aligned_cols=82 Identities=18% Similarity=0.134 Sum_probs=56.3
Q ss_pred ceeEEcccchhHHHHHHhhcCceeEEEeeCCCceeeccCCcEEEEeCceEEEEEecCeEEEEeEEEEEEeCcc-----cc
Q 042790 335 RGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPD-----LK 409 (617)
Q Consensus 335 KqFEIt~~vLPRyF~t~FeSGV~~iqL~Ld~prE~vLpNG~ivlE~~KAs~iy~YdGs~Vv~~G~LR~~F~~d-----LK 409 (617)
|.|-=...=||=||+..|..|-.-+ |...+-.|.++ .++..+.|+|-.++.+-++.+.|.+| -|
T Consensus 95 r~F~kYP~~i~DyfK~sfPeGyswe-------Rt~~fEDGGv~----t~~~~isleg~~~~~~v~~~G~FP~dGPVMqkk 163 (252)
T 2zo6_A 95 RCLTKYPDDIPDYFKQCFPGGYSWE-------RKFEFEDGGLA----IAKAEISLKGNCFEHKSTIEGTFPDSSPIAQNK 163 (252)
T ss_dssp TTSSBCCTTSCCTTGGGTTTCEEEE-------EEEEETTSCEE----EEEEEEEEETTEEEEEEEEEEECCTTCTTTTTC
T ss_pred eecccCCCCcchHHHHhCCCceeEE-------EEEEECCCCEE----EEEEEEEEECCEEEEEEEEEEEcCCCCCccccc
Confidence 6665555667778888888776544 33345567666 45667788877777777888889875 67
Q ss_pred eeEEEEEeeceeecccccchh
Q 042790 410 ILSWEFCAWQHEEFLPRNLVA 430 (617)
Q Consensus 410 IEs~EF~~~~HeEyIpR~~L~ 430 (617)
+.-||=++. -+++|.-+.
T Consensus 164 t~~wePS~E---~m~p~dg~L 181 (252)
T 2zo6_A 164 TLGWEPSTE---KMTVRDGSM 181 (252)
T ss_dssp EEEECCEEE---EEEEETTEE
T ss_pred ccCcCCcee---EEEecCCEE
Confidence 888886554 467777543
No 8
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=8.45 E-value=1.6e+02 Score=29.26 Aligned_cols=84 Identities=17% Similarity=0.117 Sum_probs=48.1
Q ss_pred cccccccccccccccccCCCCCCceeEEc--ccchhHHHHHHhhcCceeEEEeeCCCcee------------eccCCcEE
Q 042790 312 AFGFFPKAAVDAWQCDLCGTKPGRGFEAN--LEAFPRLNKVMFESGVIDELLYLDMPHER------------VQFSGLMI 377 (617)
Q Consensus 312 a~Gvf~q~~~~~w~cd~~gsk~~KqFEIt--~~vLPRyF~t~FeSGV~~iqL~Ld~prE~------------vLpNG~iv 377 (617)
++.|.|.....+|.|..|+.. ..+++. ....|..|-.+ |-..+.+..+..+.. .+|.|.+
T Consensus 123 ~S~V~p~~~~~~f~C~~C~~~--~~v~~~~~~~~~P~~Cp~C---~~~~f~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~- 196 (279)
T 1ltl_A 123 TDEIRPRIVKAVFECRGCMRH--HAVTQSTNMITEPSLCSEC---GGRSFRLLQDESEFLDTQTLKLQEPLENLSGGEQ- 196 (279)
T ss_dssp ECCCEEEEEEEEEEETTTCCE--EEEECSSSSCCCCSCCTTT---CCCCEEECGGGCEEEEEEEEEEECCSTTCCSSCC-
T ss_pred ecceEEEEEEEEEEcCCCCCE--EEEEecCCcccCCCcCCCC---CCCCcEEeccccEEEeeEEEEEecCcccCCCCCC-
Confidence 456677767778899999853 233432 23556555332 222233322222110 1355643
Q ss_pred EEeCceEEEEEec--------CeEEEEeEEEEEEe
Q 042790 378 LEYGKAVQETVFE--------QCRVVREGKLRIVF 404 (617)
Q Consensus 378 lE~~KAs~iy~Yd--------Gs~Vv~~G~LR~~F 404 (617)
||..-++.++ |-+|+++|.+++..
T Consensus 197 ---Prsi~V~l~~dLvd~~~PGDrV~vtGI~~~~~ 228 (279)
T 1ltl_A 197 ---PRQITVVLEDDLVDTLTPGDIVRVTGTLRTVR 228 (279)
T ss_dssp ---CCEEEEEEEGGGTTCCCTTCEEEEEEEEEEEE
T ss_pred ---CeEEEEEEcccccCccCCCCEEEEEEEEEEee
Confidence 6666666663 79999999999885
No 9
>1uy4_A Endo-1,4-beta-xylanase A; carbohydrate-binding module, thermodynamics, protein structure, protein-carbohydrate interactions; HET: XYP; 1.69A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1uy1_A* 1uy3_A* 1uy2_A*
Probab=8.02 E-value=2.6e+02 Score=25.10 Aligned_cols=18 Identities=17% Similarity=0.451 Sum_probs=0.0
Q ss_pred EEEEEeCcccceeEEEEE
Q 042790 399 KLRIVFTPDLKILSWEFC 416 (617)
Q Consensus 399 ~LR~~F~~dLKIEs~EF~ 416 (617)
.|++.|...+.|+||+|.
T Consensus 125 ~lyl~f~g~~nl~~~~F~ 142 (145)
T 1uy4_A 125 DIVLVFSGPVNVDNFIFS 142 (145)
T ss_dssp EEEEEESSCCEEEEEEEE
T ss_pred EEEEEEeCCeEEEEEEEE
No 10
>2wur_A Green fluorescent protein; chromophore, beta-barrel, luminescence, photoprotein, bioluminescence; HET: CSY IPA EOH; 0.90A {Aequorea victoria} PDB: 1emk_A* 1eme_A* 1emc_A* 1eml_A* 1s6z_A* 1z1p_A* 1z1q_A* 1q4a_A* 1c4f_A* 1emb_A* 1emg_A* 1ema_A* 1hcj_A* 1q4b_A* 1w7s_A* 1w7t_A* 1w7u_A* 2emd_A* 1emm_A* 2emn_A* ...
Probab=7.19 E-value=6.1e+02 Score=25.46 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=0.0
Q ss_pred h--hHHHHHHhhcCceeEEEeeCCCceeeccCCcEEEEeCceEEEEEecCeEEEEeEEEEEE-eCcc-----cceeEEEE
Q 042790 344 F--PRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIV-FTPD-----LKILSWEF 415 (617)
Q Consensus 344 L--PRyF~t~FeSGV~~iqL~Ld~prE~vLpNG~ivlE~~KAs~iy~YdGs~Vv~~G~LR~~-F~~d-----LKIEs~EF 415 (617)
| |-||+..|..|-.-+ |...+-.|.++ .++..|.|+|-.++.+-++.+. |.+| -|+. ||.
T Consensus 76 i~~~DyFK~sfpeGyswe-------Rt~~fEDGGv~----t~~~~itleg~~~~~~~~f~GvnFP~dGPVMqkkt~-wep 143 (236)
T 2wur_A 76 MKRHDFFKSAMPEGYVQE-------RTIFFKDDGNY----KTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLE-YNY 143 (236)
T ss_dssp GGGGCHHHHTTTTCEEEE-------EEEEETTSCEE----EEEEEEEEETTEEEEEEEEEEECCCTTSTTTTTCBC-SCC
T ss_pred CCCCCHHHHhCCCCceEE-------EEEEECCCcEE----EEEEEEEEECCEEEEEEEEEEECCCCCCCcccccee-ecC
Q ss_pred Eee
Q 042790 416 CAW 418 (617)
Q Consensus 416 ~~~ 418 (617)
++.
T Consensus 144 s~e 146 (236)
T 2wur_A 144 NSH 146 (236)
T ss_dssp CCC
T ss_pred Ccc
Done!