Query 042790
Match_columns 617
No_of_seqs 128 out of 180
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 16:39:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042790.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042790hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dxoa1 d.17.4.19 (A:1-117) Un 44.9 39 0.0029 26.4 8.1 66 340-413 46-111 (117)
2 d1uxxx_ b.18.1.10 (X:) Carbohy 18.0 40 0.0029 27.3 3.3 20 399-418 105-124 (125)
3 d1m98a2 d.17.4.6 (A:176-317) O 15.8 42 0.0031 28.7 3.1 116 257-417 17-132 (142)
4 d2hewf1 b.22.1.1 (F:58-185) Tu 14.2 55 0.004 27.8 3.2 37 372-423 33-69 (128)
5 d1od3a_ b.18.1.10 (A:) Putativ 13.6 61 0.0044 26.1 3.4 19 399-417 112-130 (132)
6 d1ggxa_ d.22.1.1 (A:) Red fluo 12.8 2.2E+02 0.016 26.0 7.3 82 334-429 63-150 (219)
7 d3er7a1 d.17.4.24 (A:5-122) Un 12.1 3.1E+02 0.023 22.6 7.4 25 390-414 88-112 (118)
8 d1svya_ d.109.1.1 (A:) Severin 12.1 27 0.0019 27.5 0.5 42 345-390 4-45 (102)
9 d1ohpa1 d.17.4.3 (A:1-125) Del 11.7 2.2E+02 0.016 21.1 6.1 68 339-414 46-113 (125)
10 d1tg7a1 b.149.1.1 (A:570-666) 11.4 15 0.0011 30.1 -1.2 35 82-116 12-47 (97)
No 1
>d3dxoa1 d.17.4.19 (A:1-117) Uncharacterized protein Atu0744 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=44.94 E-value=39 Score=26.42 Aligned_cols=66 Identities=6% Similarity=-0.079 Sum_probs=36.7
Q ss_pred cccchhHHHHHHhhcCceeEEEeeCCCceeeccCCcEEEEeCceEEEEEecCeEEEEeEEEEEEeCcccceeEE
Q 042790 340 NLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSW 413 (617)
Q Consensus 340 t~~vLPRyF~t~FeSGV~~iqL~Ld~prE~vLpNG~ivlE~~KAs~iy~YdGs~Vv~~G~LR~~F~~dLKIEs~ 413 (617)
+...|-+|+...++.- ..+.+.+.. +-.-.++...+ .|+...++-.++.+|.=.+.|+.+.||..+
T Consensus 46 G~~ai~~~~~~~~~~~-~~~~~~~~~--~v~~~~~~~~~-----~w~~~~~~~~~~~~G~d~~~~~~dGkI~~~ 111 (117)
T d3dxoa1 46 GQQGIAAMIEAARQKF-PGYRFVLAG--TPDGHGNFTRF-----SWRLISPDGDDVAGGTDVVSLNTEGRIDNV 111 (117)
T ss_dssp HHHHHHHHHHHHHHHS-TTCEEEEEE--EEEEETTEEEE-----EEEEECTTSCEEEEEEEEEEECTTSSEEEE
T ss_pred cHHHHHHHHHHHHHhC-CCcEEEEEE--EEecCCCEEEE-----EEEEecCCCCeEEEEEEEEEECCCCCEEEE
Confidence 6778888888766531 112222111 10011222211 233333444578899999999999999664
No 2
>d1uxxx_ b.18.1.10 (X:) Carbohydrate binding module from xylanase U {Clostridium thermocellum [TaxId: 1515]}
Probab=18.02 E-value=40 Score=27.28 Aligned_cols=20 Identities=25% Similarity=0.301 Sum_probs=17.1
Q ss_pred EEEEEeCcccceeEEEEEee
Q 042790 399 KLRIVFTPDLKILSWEFCAW 418 (617)
Q Consensus 399 ~LR~~F~~dLKIEs~EF~~~ 418 (617)
+||+.|.-.+.|+||+|...
T Consensus 105 ~l~l~~~g~~Nid~~~F~~~ 124 (125)
T d1uxxx_ 105 DLYLVFSGPVNIDYFIFDSN 124 (125)
T ss_dssp EEEEEESSCCEEEEEEEECC
T ss_pred EEEEEEeCCceEEEEEEEeC
Confidence 38888988999999999754
No 3
>d1m98a2 d.17.4.6 (A:176-317) Orange carotenoid protein, C-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}
Probab=15.81 E-value=42 Score=28.69 Aligned_cols=116 Identities=15% Similarity=0.066 Sum_probs=59.9
Q ss_pred cchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCCCCeeeeEeecccCCCCCcccccccccccccccccCCCCCCce
Q 042790 257 HSGVCSRRIMQYMYHLRHRPSENGIAYWRKFVAEYYAPCAKKRWCFSMYDNAGHHAFGFFPKAAVDAWQCDLCGTKPGRG 336 (617)
Q Consensus 257 ~~G~c~lRLmqf~e~Ls~r~~~ndIeYWqkFV~EFFSP~AvlR~tls~~d~~g~~a~Gvf~q~~~~~w~cd~~gsk~~Kq 336 (617)
..|..---+..|++.++.. |.+- +.+.|+++|++. +. ..+.
T Consensus 17 ~~~i~~~~V~~Y~~a~na~----D~d~----~~~lFa~Dav~~------~P-------------------------~~~p 57 (142)
T d1m98a2 17 IEGVTNSTVLQYMDNLNAN----DFDN----LISLFAEDGALQ------PP-------------------------FQKP 57 (142)
T ss_dssp BBTBCCHHHHHHHHHHHTT----CHHH----HHTTEEEEEEEE------CT-------------------------TSCC
T ss_pred cccccHHHHHHHHHHHhcC----CHHH----HHHHcCCCeEEe------CC-------------------------CCcc
Confidence 3343334467777777753 4333 457899998872 11 1123
Q ss_pred eEEcccchhHHHHHHhhcCceeEEEeeCCCceeeccCCcEEEEeCceEEEEEecCeEEEEeEEEEEEeCcccceeEEEEE
Q 042790 337 FEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFC 416 (617)
Q Consensus 337 FEIt~~vLPRyF~t~FeSGV~~iqL~Ld~prE~vLpNG~ivlE~~KAs~iy~YdGs~Vv~~G~LR~~F~~dLKIEs~EF~ 416 (617)
+ .+...|-+||.... .|+.-... .+..+ ...+|...++..--+..-| .|..+..+..=+-.|+.+.||-.+++.
T Consensus 58 ~-~G~eaI~~f~~~~~-~~~~~~p~--~g~~~-~~~~g~~~v~vtgkV~~~~-~G~~~~vn~a~~F~ln~~GkI~~v~i~ 131 (142)
T d1m98a2 58 I-VGKENTLRFFREEC-QNLKLIPE--RGVSE-PTEDGYTQIKVTGKVQTPW-FGGNVGMNIAWRFLLNPENKVFFVAID 131 (142)
T ss_dssp E-ESHHHHHHHHHHHC-TTCEEEEE--EEEEE-ECGGGCEEEEEEEEEECTT-TGGGCCEEEEEEEEECTTSCEEEEEEE
T ss_pred c-cCHHHHHHHHHHhc-ccceeccc--ceeeE-eecCCcEEEEEEEEEecCC-CCcceeeeeEEEEEECCCCcEEEEEee
Confidence 3 47788999888553 34443311 11111 1234444333211011112 244444444445677888999988865
Q ss_pred e
Q 042790 417 A 417 (617)
Q Consensus 417 ~ 417 (617)
.
T Consensus 132 l 132 (142)
T d1m98a2 132 L 132 (142)
T ss_dssp E
T ss_pred h
Confidence 4
No 4
>d2hewf1 b.22.1.1 (F:58-185) Tumor necrosis factor ligand superfamily member 4, OX40L {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.23 E-value=55 Score=27.80 Aligned_cols=37 Identities=11% Similarity=0.157 Sum_probs=25.7
Q ss_pred cCCcEEEEeCceEEEEEecCeEEEEeEEEEEEeCcccceeEEEEEeeceeec
Q 042790 372 FSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWEFCAWQHEEF 423 (617)
Q Consensus 372 pNG~ivlE~~KAs~iy~YdGs~Vv~~G~LR~~F~~dLKIEs~EF~~~~HeEy 423 (617)
-|++++|.| ||.+++ .||+.|+++++|. ...|.-+|-
T Consensus 33 qnNSviI~C---------DG~Yli---sLKG~fsqelsi~---L~yrkg~~p 69 (128)
T d2hewf1 33 QNNSVVIKC---------DGLYII---YLKGSFFQEVKID---LHFREDHNP 69 (128)
T ss_dssp ETTEEECCB---------CEEEEE---EEEEEESSCCCEE---EECCTTSCC
T ss_pred ecCcEEEec---------CceEEE---EEeeeecceeEEE---EEEecCCCc
Confidence 388888888 455655 4899999999764 344554444
No 5
>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]}
Probab=13.63 E-value=61 Score=26.15 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=16.5
Q ss_pred EEEEEeCcccceeEEEEEe
Q 042790 399 KLRIVFTPDLKILSWEFCA 417 (617)
Q Consensus 399 ~LR~~F~~dLKIEs~EF~~ 417 (617)
+||+.|+..+.|+||+|.-
T Consensus 112 ~l~l~~~g~~nld~~~f~~ 130 (132)
T d1od3a_ 112 DIVLVFSGPVNVDWFVFSK 130 (132)
T ss_dssp EEEEEESSCCEEEEEEEEC
T ss_pred EEEEEEeCCceEEEEEEEe
Confidence 5788899899999999974
No 6
>d1ggxa_ d.22.1.1 (A:) Red fluorescent protein (fp583 or dsred(clontech)) {Coral (Discosoma sp.) [TaxId: 86600]}
Probab=12.81 E-value=2.2e+02 Score=26.03 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=60.2
Q ss_pred CceeEEcccchhHHHHHHhhcCceeEEEeeCCCceeeccCCcEEEEeCceEEEEEecCeEEEEeEEEEEE-eCcc-----
Q 042790 334 GRGFEANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIV-FTPD----- 407 (617)
Q Consensus 334 ~KqFEIt~~vLPRyF~t~FeSGV~~iqL~Ld~prE~vLpNG~ivlE~~KAs~iy~YdGs~Vv~~G~LR~~-F~~d----- 407 (617)
.|.|-=-..=||=||+..|..|-.-+ |...+-.|.++ .++..|.|+|-.++.+-++... |.+|
T Consensus 63 ~r~F~kYP~~i~dyfk~sfp~Gys~e-------Rt~~fEDGGv~----t~~~~isleg~~~~~~~~~~G~nFP~dGPVMq 131 (219)
T d1ggxa_ 63 SKVYVKHPADIPDYKKLSFPEGFKWE-------RVMNFEDGGVV----TVTQDSSLQDGCFIYKVKFIGVNFPSDGPVMQ 131 (219)
T ss_dssp CGGGCBCCTTSCCHHHHTTTTCEEEE-------EEEEETTSCEE----EEEEEEEEETTEEEEEEEEEEECCCTTSTTTT
T ss_pred cEEeccCCCCcchHHHhhCCCCeeEE-------EEEEEcCCCEE----EEEEEEEEECCEEEEEEEEEEECCCCCCCccc
Confidence 46776666778999999999887655 44456677776 4566788888888888888877 8875
Q ss_pred cceeEEEEEeeceeecccccch
Q 042790 408 LKILSWEFCAWQHEEFLPRNLV 429 (617)
Q Consensus 408 LKIEs~EF~~~~HeEyIpR~~L 429 (617)
-||.-||-++.. .+||.-+
T Consensus 132 kkt~~weps~e~---m~p~dg~ 150 (219)
T d1ggxa_ 132 KKTMGWEASTER---LYPRDGV 150 (219)
T ss_dssp TCEEEECCEEEE---EEEETTE
T ss_pred cccccCCCceEE---EEEeCCE
Confidence 788999987633 4566644
No 7
>d3er7a1 d.17.4.24 (A:5-122) Uncharacterized protein Exig0174 {Exiguobacterium sibiricum 255-15 [TaxId: 262543]}
Probab=12.10 E-value=3.1e+02 Score=22.60 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=22.4
Q ss_pred cCeEEEEeEEEEEEeCcccceeEEE
Q 042790 390 EQCRVVREGKLRIVFTPDLKILSWE 414 (617)
Q Consensus 390 dGs~Vv~~G~LR~~F~~dLKIEs~E 414 (617)
||...+.+|+=.+..+.+.||-.++
T Consensus 88 dG~~~~~~G~DiA~l~~~GKI~yL~ 112 (118)
T d3er7a1 88 DGSVFTQDGTDIARLNADGKIVYLA 112 (118)
T ss_dssp TSCEEEEEEEEEEEECTTSCEEEEE
T ss_pred CCcEEEecCcchhhhcCCCcEEeee
Confidence 6888899999999999999998775
No 8
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]}
Probab=12.09 E-value=27 Score=27.46 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=23.5
Q ss_pred hHHHHHHhhcCceeEEEeeCCCceeeccCCcEEEEeCceEEEEEec
Q 042790 345 PRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVFE 390 (617)
Q Consensus 345 PRyF~t~FeSGV~~iqL~Ld~prE~vLpNG~ivlE~~KAs~iy~Yd 390 (617)
||+|+......++-.++ +...+...++++++|++... +|++-
T Consensus 4 pRL~~v~G~~~~~~~ev--~~~~~~L~s~dvfILd~~~~--iyvW~ 45 (102)
T d1svya_ 4 PRLLHISGDKNAKVAEV--PLATSSLNSGDCFLLDAGLT--IYQFN 45 (102)
T ss_dssp CEEEEEECTTSCEEEEE--CSSGGGCBTTSEEEEECSSE--EEEEE
T ss_pred cEEEEEECCCceEEEEe--cCCHHHcCCCCeEEEEcCCE--EEEEE
Confidence 55555443333433332 44466656777889998863 44443
No 9
>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]}
Probab=11.66 E-value=2.2e+02 Score=21.10 Aligned_cols=68 Identities=10% Similarity=0.037 Sum_probs=40.9
Q ss_pred EcccchhHHHHHHhhcCceeEEEeeCCCceeeccCCcEEEEeCceEEEEEecCeEEEEeEEEEEEeCcccceeEEE
Q 042790 339 ANLEAFPRLNKVMFESGVIDELLYLDMPHERVQFSGLMILEYGKAVQETVFEQCRVVREGKLRIVFTPDLKILSWE 414 (617)
Q Consensus 339 It~~vLPRyF~t~FeSGV~~iqL~Ld~prE~vLpNG~ivlE~~KAs~iy~YdGs~Vv~~G~LR~~F~~dLKIEs~E 414 (617)
.+...|-.||...+. ...++.+.. .....++..+++. ......+|-.+...|.-...|+.|.||..+.
T Consensus 46 ~G~~~i~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~d~dGkI~~~~ 113 (125)
T d1ohpa1 46 SGTAAIREFYANSLK-LPLAVELTQ----EVRAVANEAAFAF---IVSFEYQGRKTVVAPIDHFRFNGAGKVVSMR 113 (125)
T ss_dssp ESHHHHHHHHHHHTS-SCCEEEECS----CCEEETTEEEEEE---EEEEEETTEEEEECCEEEEEECTTSCEEEEE
T ss_pred ccHHHHHHHHHHHhh-cCCceEEEE----EEEEecceEEEEE---EEEEecCCceEEEEEEEEEEECCCCeEEEEE
Confidence 345667777777665 333333321 1122344444432 1222235889999999999999999997654
No 10
>d1tg7a1 b.149.1.1 (A:570-666) Beta-galactosidase LacA, domain 3 {Penicillium sp. [TaxId: 5081]}
Probab=11.43 E-value=15 Score=30.12 Aligned_cols=35 Identities=23% Similarity=0.062 Sum_probs=28.0
Q ss_pred ccccCCC-cccccccCCCCcCCCCCCcccccccCcc
Q 042790 82 TTNYRLS-RFSSLLPNSSSAISMGPQSHRSASADVY 116 (617)
Q Consensus 82 ~~~~~~s-~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (617)
+++.++. +.++-.+..++-|..||.|=|+|+++..
T Consensus 12 l~~~~~~~~~~~~~~~~~sVlV~GpYLVRsAsi~g~ 47 (97)
T d1tg7a1 12 VPTKGTAPGYSNQETTASSIIVKAGYLVRSAYLDGN 47 (97)
T ss_dssp CCSSSSCCCCCSHHHHHTCCEEECSSEEEEEEEETT
T ss_pred cCCCCccccccccCCCCceEEEECCcEEEEEEecCC
Confidence 4555666 6677778889999999999999998654
Done!