Query 042791
Match_columns 761
No_of_seqs 324 out of 3675
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 09:32:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.2E-67 1.4E-71 581.0 36.6 616 3-666 151-787 (889)
2 PLN03210 Resistant to P. syrin 100.0 2E-60 4.4E-65 561.0 44.4 679 5-760 178-907 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.5E-38 5.5E-43 320.9 14.3 278 16-302 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 2.1E-26 4.6E-31 273.6 18.0 186 375-565 70-271 (968)
5 PLN00113 leucine-rich repeat r 99.9 4.4E-26 9.5E-31 270.9 14.6 355 375-758 189-583 (968)
6 KOG0444 Cytoskeletal regulator 99.9 8.1E-27 1.8E-31 234.6 -2.7 342 374-759 7-375 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 2.1E-26 4.5E-31 231.7 -4.9 321 373-740 54-380 (1255)
8 KOG4194 Membrane glycoprotein 99.9 4.1E-25 8.9E-30 221.0 3.6 337 375-759 79-429 (873)
9 KOG0472 Leucine-rich repeat pr 99.9 1.1E-25 2.4E-30 215.2 -5.2 339 373-758 67-540 (565)
10 KOG4194 Membrane glycoprotein 99.9 8.6E-24 1.9E-28 211.6 2.5 336 371-755 99-448 (873)
11 PLN03210 Resistant to P. syrin 99.9 5.5E-21 1.2E-25 226.8 20.4 273 456-760 653-944 (1153)
12 KOG0472 Leucine-rich repeat pr 99.8 6.6E-23 1.4E-27 196.4 -7.6 256 374-676 45-302 (565)
13 KOG0618 Serine/threonine phosp 99.8 7.2E-21 1.6E-25 201.4 -4.2 126 624-757 239-418 (1081)
14 KOG0618 Serine/threonine phosp 99.7 5.5E-20 1.2E-24 194.8 -2.5 353 373-759 44-489 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 6.8E-16 1.5E-20 169.6 12.2 114 627-757 343-456 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 9.1E-15 2E-19 160.9 10.9 257 377-717 204-460 (788)
17 PRK15370 E3 ubiquitin-protein 99.5 3.6E-14 7.7E-19 157.4 10.4 256 375-727 179-438 (754)
18 PRK15370 E3 ubiquitin-protein 99.5 2.7E-14 5.8E-19 158.4 7.9 96 626-734 325-427 (754)
19 KOG0617 Ras suppressor protein 99.5 7.1E-16 1.5E-20 130.9 -5.3 154 375-547 34-189 (264)
20 KOG0617 Ras suppressor protein 99.5 9.4E-16 2E-20 130.1 -5.1 156 392-565 28-184 (264)
21 PRK00411 cdc6 cell division co 99.5 1.5E-11 3.3E-16 130.6 25.4 318 5-341 24-374 (394)
22 PRK04841 transcriptional regul 99.4 3.4E-11 7.4E-16 143.1 25.0 300 3-352 6-332 (903)
23 TIGR02928 orc1/cdc6 family rep 99.4 1.6E-10 3.5E-15 121.4 26.3 304 7-329 11-352 (365)
24 PF01637 Arch_ATPase: Archaeal 99.4 2.4E-12 5.3E-17 126.5 11.4 196 13-219 1-233 (234)
25 COG2256 MGS1 ATPase related to 99.4 1E-11 2.2E-16 121.4 14.6 171 8-214 27-206 (436)
26 TIGR03015 pepcterm_ATPase puta 99.4 1.1E-10 2.4E-15 117.0 21.8 182 38-224 43-242 (269)
27 KOG4237 Extracellular matrix p 99.3 1E-13 2.3E-18 133.7 -0.9 127 375-517 68-198 (498)
28 cd00116 LRR_RI Leucine-rich re 99.3 2.6E-13 5.7E-18 140.3 0.8 57 701-757 249-318 (319)
29 KOG4237 Extracellular matrix p 99.3 1.8E-13 3.8E-18 132.2 -2.4 140 385-542 57-199 (498)
30 cd00116 LRR_RI Leucine-rich re 99.2 5.8E-13 1.2E-17 137.8 -1.8 242 421-758 17-290 (319)
31 COG2909 MalT ATP-dependent tra 99.2 7.3E-10 1.6E-14 118.7 21.2 306 3-354 11-340 (894)
32 PF05729 NACHT: NACHT domain 99.2 9.4E-11 2E-15 108.2 13.0 143 39-187 1-163 (166)
33 TIGR00635 ruvB Holliday juncti 99.2 3.6E-10 7.9E-15 115.3 15.7 179 11-222 4-203 (305)
34 PRK00080 ruvB Holliday junctio 99.2 8.4E-10 1.8E-14 113.2 17.5 184 6-222 20-224 (328)
35 PTZ00112 origin recognition co 99.1 1.4E-09 2.9E-14 117.5 16.9 215 9-224 753-986 (1164)
36 KOG4658 Apoptotic ATPase [Sign 99.1 1.1E-10 2.4E-15 132.0 7.3 256 393-687 519-786 (889)
37 PF05496 RuvB_N: Holliday junc 99.0 2.6E-09 5.7E-14 97.9 12.7 188 5-225 18-226 (233)
38 COG1474 CDC6 Cdc6-related prot 99.0 2.2E-08 4.7E-13 102.3 20.7 209 7-220 13-238 (366)
39 PRK13342 recombination factor 99.0 5.6E-09 1.2E-13 110.4 16.2 182 6-221 7-197 (413)
40 KOG2028 ATPase related to the 99.0 3.7E-09 8E-14 101.5 12.4 177 7-214 140-330 (554)
41 TIGR03420 DnaA_homol_Hda DnaA 99.0 7.9E-09 1.7E-13 100.6 15.0 178 9-223 13-204 (226)
42 PRK06893 DNA replication initi 99.0 1.3E-08 2.8E-13 98.2 15.4 156 38-224 39-207 (229)
43 PRK14961 DNA polymerase III su 99.0 2.5E-08 5.4E-13 103.4 18.0 198 7-217 12-217 (363)
44 PRK14949 DNA polymerase III su 99.0 1.1E-08 2.4E-13 112.5 15.9 203 6-220 11-220 (944)
45 PRK14960 DNA polymerase III su 98.9 1.9E-08 4.1E-13 107.3 16.2 183 6-217 10-216 (702)
46 COG3899 Predicted ATPase [Gene 98.9 3.8E-08 8.3E-13 112.2 19.1 288 12-325 1-355 (849)
47 PRK12402 replication factor C 98.9 3.5E-08 7.7E-13 102.6 16.4 201 7-219 11-225 (337)
48 PF13401 AAA_22: AAA domain; P 98.9 3.6E-09 7.8E-14 93.0 7.6 115 38-156 4-125 (131)
49 PRK12323 DNA polymerase III su 98.9 2.6E-08 5.6E-13 106.0 15.1 199 7-220 12-225 (700)
50 PRK07003 DNA polymerase III su 98.9 3.6E-08 7.8E-13 106.4 16.1 187 7-220 12-221 (830)
51 PRK14956 DNA polymerase III su 98.9 2.5E-08 5.3E-13 103.6 13.5 199 6-216 13-218 (484)
52 PRK14957 DNA polymerase III su 98.9 7.7E-08 1.7E-12 102.9 17.3 187 6-221 11-222 (546)
53 PLN03025 replication factor C 98.8 5E-08 1.1E-12 99.6 14.6 184 6-215 8-195 (319)
54 PRK09112 DNA polymerase III su 98.8 6.8E-08 1.5E-12 98.4 15.4 200 5-221 17-241 (351)
55 PRK14964 DNA polymerase III su 98.8 9.2E-08 2E-12 100.7 16.7 184 6-217 8-214 (491)
56 PRK14963 DNA polymerase III su 98.8 1.2E-08 2.7E-13 108.9 10.2 202 6-217 9-214 (504)
57 PF13191 AAA_16: AAA ATPase do 98.8 8.7E-09 1.9E-13 96.9 7.8 63 12-79 1-63 (185)
58 PRK14962 DNA polymerase III su 98.8 2.2E-07 4.7E-12 98.6 18.9 189 6-223 9-222 (472)
59 PRK07940 DNA polymerase III su 98.8 1.2E-07 2.6E-12 98.0 16.3 192 11-220 5-213 (394)
60 PRK08691 DNA polymerase III su 98.8 6.2E-08 1.3E-12 104.6 14.5 184 7-219 12-219 (709)
61 KOG2227 Pre-initiation complex 98.8 1.3E-07 2.8E-12 94.7 15.7 212 9-222 148-374 (529)
62 PRK06645 DNA polymerase III su 98.8 1.8E-07 4E-12 99.4 17.9 201 6-217 16-226 (507)
63 PRK08903 DnaA regulatory inact 98.8 1.2E-07 2.5E-12 92.1 14.9 178 7-224 14-203 (227)
64 PTZ00202 tuzin; Provisional 98.8 4.9E-07 1.1E-11 90.9 19.0 171 5-187 256-434 (550)
65 PRK00440 rfc replication facto 98.8 1.8E-07 3.8E-12 96.6 17.0 184 7-217 13-200 (319)
66 PRK07471 DNA polymerase III su 98.8 3.7E-08 7.9E-13 100.9 11.5 198 5-221 13-239 (365)
67 PRK07994 DNA polymerase III su 98.8 1E-07 2.2E-12 103.5 15.5 199 6-220 11-220 (647)
68 KOG0532 Leucine-rich repeat (L 98.8 5.4E-10 1.2E-14 113.6 -2.0 89 451-542 112-200 (722)
69 PRK04195 replication factor C 98.8 1.6E-07 3.4E-12 101.5 16.5 186 6-219 9-201 (482)
70 TIGR02397 dnaX_nterm DNA polym 98.8 3.5E-07 7.6E-12 95.9 18.3 186 7-221 10-219 (355)
71 PRK05896 DNA polymerase III su 98.8 2E-07 4.4E-12 99.6 16.4 200 6-221 11-222 (605)
72 PRK14951 DNA polymerase III su 98.8 2.4E-07 5.2E-12 100.5 16.9 198 7-219 12-224 (618)
73 PRK08727 hypothetical protein; 98.8 3E-07 6.5E-12 88.9 15.9 148 39-217 42-201 (233)
74 TIGR00678 holB DNA polymerase 98.7 3.3E-07 7.2E-12 85.9 15.8 90 116-215 95-186 (188)
75 PRK13341 recombination factor 98.7 6E-08 1.3E-12 107.7 12.3 176 7-215 24-212 (725)
76 PRK14958 DNA polymerase III su 98.7 1.9E-07 4E-12 100.2 15.6 184 7-217 12-217 (509)
77 PRK05564 DNA polymerase III su 98.7 3.1E-07 6.7E-12 93.6 16.5 178 11-220 4-190 (313)
78 cd00009 AAA The AAA+ (ATPases 98.7 9.3E-08 2E-12 86.3 11.1 124 14-157 1-130 (151)
79 PRK14955 DNA polymerase III su 98.7 2.2E-07 4.8E-12 97.6 15.2 197 6-218 11-226 (397)
80 KOG3207 Beta-tubulin folding c 98.7 5E-09 1.1E-13 103.4 2.6 179 373-564 120-311 (505)
81 PF14580 LRR_9: Leucine-rich r 98.7 9.9E-09 2.1E-13 92.5 4.0 127 392-538 14-147 (175)
82 PRK08084 DNA replication initi 98.7 6.4E-07 1.4E-11 86.7 16.4 154 38-222 45-211 (235)
83 KOG0532 Leucine-rich repeat (L 98.7 2.3E-10 5.1E-15 116.1 -7.7 153 378-551 102-254 (722)
84 PF13173 AAA_14: AAA domain 98.7 9.9E-08 2.1E-12 82.9 9.3 119 39-179 3-127 (128)
85 PRK14969 DNA polymerase III su 98.7 3.9E-07 8.6E-12 98.5 15.8 185 7-220 12-221 (527)
86 PRK14952 DNA polymerase III su 98.6 8.8E-07 1.9E-11 95.9 17.3 201 6-222 8-222 (584)
87 KOG3207 Beta-tubulin folding c 98.6 4.7E-09 1E-13 103.6 -0.0 158 394-563 118-280 (505)
88 PF00308 Bac_DnaA: Bacterial d 98.6 7.5E-07 1.6E-11 85.0 14.8 163 37-221 33-209 (219)
89 PRK07133 DNA polymerase III su 98.6 8.8E-07 1.9E-11 96.9 17.1 200 6-217 13-216 (725)
90 TIGR01242 26Sp45 26S proteasom 98.6 3.3E-07 7.1E-12 95.6 13.4 184 5-214 116-328 (364)
91 PRK14959 DNA polymerase III su 98.6 8E-07 1.7E-11 95.7 15.9 190 6-224 11-225 (624)
92 PRK08451 DNA polymerase III su 98.6 1.6E-06 3.4E-11 92.5 17.6 183 6-220 9-218 (535)
93 PRK07764 DNA polymerase III su 98.6 8.7E-07 1.9E-11 99.9 16.5 184 7-217 11-218 (824)
94 KOG4341 F-box protein containi 98.6 3.7E-09 8E-14 103.7 -2.3 276 427-760 138-440 (483)
95 PRK09111 DNA polymerase III su 98.6 1.3E-06 2.9E-11 95.1 17.0 199 7-220 20-233 (598)
96 PF05621 TniB: Bacterial TniB 98.6 1.6E-06 3.5E-11 83.9 15.6 206 8-217 31-258 (302)
97 KOG1909 Ran GTPase-activating 98.6 2.8E-09 6E-14 102.3 -3.4 91 422-517 25-130 (382)
98 PRK05642 DNA replication initi 98.6 1.5E-06 3.2E-11 84.1 15.3 155 38-223 45-211 (234)
99 TIGR03345 VI_ClpV1 type VI sec 98.6 8.2E-07 1.8E-11 101.5 15.7 181 10-214 186-390 (852)
100 PF05673 DUF815: Protein of un 98.6 2.2E-06 4.7E-11 80.2 15.5 129 5-160 21-154 (249)
101 PRK14950 DNA polymerase III su 98.6 2E-06 4.3E-11 94.9 18.0 200 6-220 11-221 (585)
102 KOG0989 Replication factor C, 98.6 3.6E-07 7.9E-12 86.6 10.3 194 6-220 31-231 (346)
103 PRK09087 hypothetical protein; 98.6 1.9E-06 4.2E-11 82.5 15.5 142 38-220 44-195 (226)
104 PRK14970 DNA polymerase III su 98.6 2.3E-06 5.1E-11 89.6 17.4 184 6-217 12-206 (367)
105 PRK14953 DNA polymerase III su 98.5 3.4E-06 7.4E-11 90.1 18.2 186 6-220 11-220 (486)
106 PRK06305 DNA polymerase III su 98.5 2.6E-06 5.7E-11 90.4 17.2 180 6-215 12-217 (451)
107 PRK14954 DNA polymerase III su 98.5 2.3E-06 5E-11 93.4 17.0 197 6-215 11-223 (620)
108 PRK03992 proteasome-activating 98.5 9.8E-07 2.1E-11 92.3 13.1 182 6-213 126-336 (389)
109 PRK06647 DNA polymerase III su 98.5 3E-06 6.6E-11 92.0 17.1 197 6-218 11-218 (563)
110 KOG1259 Nischarin, modulator o 98.5 2.6E-08 5.7E-13 93.3 1.1 102 625-735 306-412 (490)
111 PLN03150 hypothetical protein; 98.5 1.3E-07 2.8E-12 105.3 6.8 92 429-529 420-512 (623)
112 COG4886 Leucine-rich repeat (L 98.5 1.1E-07 2.4E-12 101.2 6.1 173 374-566 116-289 (394)
113 COG2255 RuvB Holliday junction 98.5 1.4E-06 3.1E-11 81.7 12.1 188 4-224 19-227 (332)
114 PF14580 LRR_9: Leucine-rich r 98.5 1.4E-07 3.1E-12 85.1 5.5 124 373-516 18-149 (175)
115 PRK14965 DNA polymerase III su 98.5 4.5E-06 9.8E-11 91.6 18.2 186 6-220 11-221 (576)
116 COG4886 Leucine-rich repeat (L 98.5 1.4E-07 2.9E-12 100.5 6.1 180 424-665 113-293 (394)
117 PRK14971 DNA polymerase III su 98.5 4.1E-06 8.8E-11 92.1 17.5 182 7-217 13-219 (614)
118 PRK14087 dnaA chromosomal repl 98.5 3.6E-06 7.8E-11 89.3 16.6 169 38-224 141-323 (450)
119 PRK14948 DNA polymerase III su 98.5 6.1E-06 1.3E-10 90.7 18.2 199 7-220 12-222 (620)
120 PRK05563 DNA polymerase III su 98.5 6.8E-06 1.5E-10 89.7 18.2 196 6-217 11-217 (559)
121 PHA02544 44 clamp loader, smal 98.4 2.5E-06 5.4E-11 87.7 13.7 151 6-185 16-171 (316)
122 PF14516 AAA_35: AAA-like doma 98.4 1E-05 2.2E-10 82.8 17.9 199 12-227 12-246 (331)
123 TIGR02639 ClpA ATP-dependent C 98.4 2.2E-06 4.7E-11 97.6 14.3 154 11-187 182-358 (731)
124 KOG0991 Replication factor C, 98.4 2E-06 4.4E-11 77.9 10.7 157 7-188 23-186 (333)
125 KOG1259 Nischarin, modulator o 98.4 5.3E-08 1.1E-12 91.3 0.1 124 426-563 283-408 (490)
126 TIGR02903 spore_lon_C ATP-depe 98.4 8.6E-06 1.9E-10 90.0 17.3 207 7-223 150-398 (615)
127 CHL00095 clpC Clp protease ATP 98.4 3.6E-06 7.8E-11 96.9 14.5 154 11-186 179-353 (821)
128 PRK07399 DNA polymerase III su 98.4 1.3E-05 2.7E-10 80.8 16.3 195 11-219 4-220 (314)
129 COG3267 ExeA Type II secretory 98.4 2.6E-05 5.7E-10 72.6 16.9 181 36-222 49-247 (269)
130 PLN03150 hypothetical protein; 98.4 5.9E-07 1.3E-11 100.1 7.5 110 398-522 419-530 (623)
131 COG1223 Predicted ATPase (AAA+ 98.3 5.4E-06 1.2E-10 76.5 11.6 184 6-214 116-319 (368)
132 KOG2543 Origin recognition com 98.3 2E-05 4.3E-10 77.4 15.8 169 10-186 5-192 (438)
133 PF13855 LRR_8: Leucine rich r 98.3 3.6E-07 7.8E-12 67.3 3.1 57 461-517 2-59 (61)
134 cd01128 rho_factor Transcripti 98.3 1.3E-06 2.7E-11 84.4 7.2 91 37-128 15-114 (249)
135 COG3903 Predicted ATPase [Gene 98.3 1.4E-06 3E-11 86.8 7.5 232 37-281 13-254 (414)
136 TIGR00362 DnaA chromosomal rep 98.3 2.3E-05 5.1E-10 83.1 17.1 161 38-220 136-310 (405)
137 PRK00149 dnaA chromosomal repl 98.3 1.9E-05 4.2E-10 84.8 15.9 161 38-220 148-322 (450)
138 TIGR02881 spore_V_K stage V sp 98.3 1.2E-05 2.5E-10 79.7 13.1 160 12-189 7-193 (261)
139 PRK14088 dnaA chromosomal repl 98.3 2.9E-05 6.2E-10 82.5 16.8 162 38-220 130-305 (440)
140 PRK12422 chromosomal replicati 98.3 4.8E-05 1E-09 80.6 18.2 155 38-214 141-307 (445)
141 TIGR03689 pup_AAA proteasome A 98.3 8.7E-06 1.9E-10 86.4 12.6 170 6-187 177-378 (512)
142 CHL00181 cbbX CbbX; Provisiona 98.2 4.4E-05 9.5E-10 76.0 16.5 134 38-189 59-211 (287)
143 TIGR00602 rad24 checkpoint pro 98.2 8.2E-06 1.8E-10 89.0 12.1 55 6-61 79-133 (637)
144 PRK05707 DNA polymerase III su 98.2 3E-05 6.4E-10 78.6 15.4 97 116-220 105-203 (328)
145 PRK06620 hypothetical protein; 98.2 1.1E-05 2.3E-10 76.6 11.4 136 39-218 45-187 (214)
146 COG1222 RPT1 ATP-dependent 26S 98.2 3.5E-05 7.6E-10 75.1 14.6 182 6-214 146-357 (406)
147 TIGR03346 chaperone_ClpB ATP-d 98.2 1.5E-05 3.3E-10 92.1 14.5 155 11-188 173-350 (852)
148 KOG4341 F-box protein containi 98.2 5.1E-08 1.1E-12 95.9 -4.9 111 397-518 138-253 (483)
149 PRK11034 clpA ATP-dependent Cl 98.2 1.7E-05 3.7E-10 89.0 13.9 155 11-187 186-362 (758)
150 PTZ00454 26S protease regulato 98.2 2.2E-05 4.7E-10 81.7 13.7 184 5-213 139-350 (398)
151 PRK10865 protein disaggregatio 98.2 2.2E-05 4.7E-10 90.4 15.1 155 10-187 177-354 (857)
152 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.8E-11 64.3 3.1 58 427-494 1-60 (61)
153 KOG2120 SCF ubiquitin ligase, 98.2 5.5E-08 1.2E-12 91.2 -5.3 87 427-521 185-274 (419)
154 PTZ00361 26 proteosome regulat 98.2 7.6E-06 1.6E-10 85.6 9.4 164 6-189 178-369 (438)
155 TIGR02880 cbbX_cfxQ probable R 98.2 5.7E-05 1.2E-09 75.3 15.2 133 39-189 59-210 (284)
156 PF00004 AAA: ATPase family as 98.1 6.4E-06 1.4E-10 72.4 7.5 96 41-156 1-111 (132)
157 PRK08058 DNA polymerase III su 98.1 3.9E-05 8.4E-10 78.4 14.1 162 12-186 6-181 (329)
158 PRK11331 5-methylcytosine-spec 98.1 6.3E-06 1.4E-10 84.8 8.2 120 11-142 175-298 (459)
159 PRK09376 rho transcription ter 98.1 7.4E-06 1.6E-10 82.4 8.3 91 37-128 168-267 (416)
160 PRK08769 DNA polymerase III su 98.1 0.00011 2.3E-09 73.8 15.6 96 116-221 112-209 (319)
161 PRK14086 dnaA chromosomal repl 98.1 6.8E-05 1.5E-09 80.8 15.0 160 39-220 315-488 (617)
162 KOG0531 Protein phosphatase 1, 98.1 6.3E-07 1.4E-11 95.4 -0.5 84 456-543 91-174 (414)
163 CHL00176 ftsH cell division pr 98.1 8E-05 1.7E-09 82.1 15.7 180 8-212 180-386 (638)
164 KOG2120 SCF ubiquitin ligase, 98.1 2.1E-07 4.5E-12 87.5 -3.9 157 583-757 205-374 (419)
165 TIGR01241 FtsH_fam ATP-depende 98.0 6.6E-05 1.4E-09 81.8 14.2 191 5-220 49-267 (495)
166 PRK06871 DNA polymerase III su 98.0 0.00021 4.5E-09 71.8 16.5 172 21-217 12-200 (325)
167 smart00382 AAA ATPases associa 98.0 2.9E-05 6.3E-10 69.3 9.4 87 39-129 3-90 (148)
168 PF10443 RNA12: RNA12 protein; 98.0 0.00026 5.6E-09 72.0 16.7 205 16-233 1-291 (431)
169 TIGR00767 rho transcription te 98.0 1.8E-05 3.9E-10 80.1 7.9 90 37-128 167-266 (415)
170 PF13177 DNA_pol3_delta2: DNA 98.0 8.9E-05 1.9E-09 67.1 11.4 137 15-175 1-162 (162)
171 COG0593 DnaA ATPase involved i 98.0 0.00013 2.9E-09 74.5 13.5 134 37-189 112-259 (408)
172 COG2607 Predicted ATPase (AAA+ 97.9 0.00018 4E-09 66.1 12.8 112 6-144 55-167 (287)
173 PRK08116 hypothetical protein; 97.9 3.7E-05 8E-10 75.8 9.0 103 39-156 115-220 (268)
174 PRK15386 type III secretion pr 97.9 3.2E-05 6.9E-10 78.8 8.6 61 459-524 51-111 (426)
175 KOG1514 Origin recognition com 97.9 0.0004 8.6E-09 74.0 16.9 205 10-220 395-621 (767)
176 PRK07993 DNA polymerase III su 97.9 0.00036 7.9E-09 71.0 16.1 174 20-218 11-202 (334)
177 KOG2004 Mitochondrial ATP-depe 97.9 6.4E-05 1.4E-09 79.8 10.2 166 11-188 411-597 (906)
178 COG0466 Lon ATP-dependent Lon 97.9 7.1E-05 1.5E-09 79.8 10.7 165 12-188 324-509 (782)
179 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.5E-10 54.0 3.1 34 461-494 2-35 (44)
180 TIGR02640 gas_vesic_GvpN gas v 97.9 0.0004 8.7E-09 68.6 15.2 43 39-86 22-64 (262)
181 COG2812 DnaX DNA polymerase II 97.9 3.7E-05 7.9E-10 81.0 7.7 196 7-214 12-214 (515)
182 PRK08181 transposase; Validate 97.8 4.8E-05 1E-09 74.4 7.9 101 39-157 107-209 (269)
183 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00021 4.6E-09 82.1 14.2 206 11-224 566-823 (852)
184 CHL00195 ycf46 Ycf46; Provisio 97.8 0.00019 4E-09 76.6 12.9 183 9-214 226-429 (489)
185 PRK08939 primosomal protein Dn 97.8 0.0001 2.2E-09 74.0 10.1 122 15-156 135-260 (306)
186 PRK06090 DNA polymerase III su 97.8 0.00075 1.6E-08 67.7 16.2 174 21-220 13-201 (319)
187 TIGR00763 lon ATP-dependent pr 97.8 0.00014 3E-09 83.6 12.5 164 12-187 321-505 (775)
188 PRK10865 protein disaggregatio 97.8 0.00031 6.8E-09 81.0 15.5 125 11-143 568-696 (857)
189 KOG0744 AAA+-type ATPase [Post 97.8 0.00013 2.8E-09 70.0 10.1 80 38-127 177-260 (423)
190 PRK10536 hypothetical protein; 97.8 0.00011 2.5E-09 69.9 9.6 130 11-156 55-212 (262)
191 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00047 1E-08 72.0 14.3 183 6-213 185-395 (802)
192 PF07693 KAP_NTPase: KAP famil 97.8 0.001 2.2E-08 68.8 17.2 46 17-67 2-47 (325)
193 PRK12377 putative replication 97.8 9.3E-05 2E-09 71.4 8.5 102 38-156 101-205 (248)
194 PRK10787 DNA-binding ATP-depen 97.8 0.00011 2.3E-09 83.5 10.2 165 11-187 322-506 (784)
195 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00049 1.1E-08 79.9 15.5 125 11-143 565-693 (852)
196 PRK06964 DNA polymerase III su 97.7 0.00028 6.1E-09 71.5 11.8 93 116-220 131-225 (342)
197 PRK04296 thymidine kinase; Pro 97.7 8.3E-05 1.8E-09 69.4 7.5 114 39-159 3-118 (190)
198 TIGR02902 spore_lonB ATP-depen 97.7 0.00013 2.8E-09 79.6 9.8 176 8-189 62-278 (531)
199 KOG1909 Ran GTPase-activating 97.7 2.1E-05 4.6E-10 76.2 3.3 139 373-518 156-309 (382)
200 TIGR01243 CDC48 AAA family ATP 97.7 0.00024 5.3E-09 81.4 12.3 184 6-214 173-381 (733)
201 PRK06526 transposase; Provisio 97.7 9.7E-05 2.1E-09 71.9 7.6 101 38-157 98-201 (254)
202 TIGR02639 ClpA ATP-dependent C 97.7 0.00043 9.2E-09 79.1 13.8 122 11-143 454-579 (731)
203 KOG0741 AAA+-type ATPase [Post 97.7 0.0018 3.9E-08 66.6 16.5 133 35-186 535-685 (744)
204 PRK09183 transposase/IS protei 97.7 0.00018 3.8E-09 70.7 9.1 101 38-156 102-205 (259)
205 COG0470 HolB ATPase involved i 97.7 0.00025 5.5E-09 73.4 11.0 143 12-176 2-170 (325)
206 COG1373 Predicted ATPase (AAA+ 97.7 0.00072 1.6E-08 70.8 14.2 149 40-221 39-193 (398)
207 PRK07952 DNA replication prote 97.7 0.0003 6.5E-09 67.7 10.4 103 38-156 99-204 (244)
208 PLN00020 ribulose bisphosphate 97.7 0.00062 1.3E-08 67.9 12.5 25 36-60 146-170 (413)
209 PRK04132 replication factor C 97.7 0.00091 2E-08 75.5 15.4 155 43-217 569-728 (846)
210 COG0542 clpA ATP-binding subun 97.7 0.0002 4.3E-09 78.9 9.9 154 11-187 170-346 (786)
211 PRK13531 regulatory ATPase Rav 97.7 0.00086 1.9E-08 70.1 14.0 152 11-186 20-193 (498)
212 KOG3665 ZYG-1-like serine/thre 97.7 1.6E-05 3.4E-10 88.4 1.5 149 373-537 121-281 (699)
213 PF01695 IstB_IS21: IstB-like 97.6 6.5E-05 1.4E-09 68.9 5.2 101 38-156 47-149 (178)
214 PRK06921 hypothetical protein; 97.6 0.00017 3.7E-09 70.9 8.4 37 38-76 117-154 (266)
215 KOG0730 AAA+-type ATPase [Post 97.6 0.00077 1.7E-08 71.5 13.3 185 5-214 428-637 (693)
216 KOG1859 Leucine-rich repeat pr 97.6 5.6E-06 1.2E-10 87.4 -2.4 112 421-547 181-295 (1096)
217 PF12799 LRR_4: Leucine Rich r 97.6 4.6E-05 1E-09 51.0 2.8 40 427-476 1-40 (44)
218 COG0542 clpA ATP-binding subun 97.6 0.00013 2.9E-09 80.2 7.4 126 11-144 491-620 (786)
219 PF00158 Sigma54_activat: Sigm 97.6 0.00014 3E-09 66.0 6.4 131 13-156 1-143 (168)
220 TIGR01243 CDC48 AAA family ATP 97.6 0.0013 2.7E-08 75.6 15.4 184 6-214 448-657 (733)
221 KOG2228 Origin recognition com 97.6 0.0015 3.3E-08 63.4 13.2 175 9-187 22-219 (408)
222 PF02562 PhoH: PhoH-like prote 97.5 0.00021 4.6E-09 66.2 6.9 130 16-157 5-156 (205)
223 PF14532 Sigma54_activ_2: Sigm 97.5 9.3E-05 2E-09 65.2 4.3 108 14-156 1-109 (138)
224 cd00561 CobA_CobO_BtuR ATP:cor 97.5 0.00072 1.6E-08 59.9 9.8 116 39-157 3-138 (159)
225 PRK15386 type III secretion pr 97.5 7.6E-05 1.7E-09 76.1 4.2 83 393-503 48-134 (426)
226 KOG1859 Leucine-rich repeat pr 97.5 3.7E-06 7.9E-11 88.8 -5.3 126 373-519 163-291 (1096)
227 PRK11034 clpA ATP-dependent Cl 97.5 0.00081 1.7E-08 75.8 12.6 122 11-143 458-583 (758)
228 PRK08699 DNA polymerase III su 97.5 0.00033 7.3E-09 70.9 8.7 71 116-186 112-184 (325)
229 KOG1969 DNA replication checkp 97.5 0.00027 5.8E-09 75.5 8.0 89 35-141 323-411 (877)
230 KOG4579 Leucine-rich repeat (L 97.5 3.4E-05 7.3E-10 64.2 0.9 56 461-517 78-133 (177)
231 PRK12608 transcription termina 97.5 0.0013 2.9E-08 66.4 12.1 101 19-126 119-229 (380)
232 PRK06835 DNA replication prote 97.5 0.00029 6.4E-09 71.2 7.5 102 39-156 184-288 (329)
233 KOG2982 Uncharacterized conser 97.4 0.00014 3E-09 68.9 4.4 88 423-517 67-156 (418)
234 PF07728 AAA_5: AAA domain (dy 97.4 6E-05 1.3E-09 66.7 2.0 89 41-142 2-90 (139)
235 CHL00095 clpC Clp protease ATP 97.4 0.00048 1E-08 79.7 9.9 125 11-143 509-637 (821)
236 KOG0728 26S proteasome regulat 97.4 0.0054 1.2E-07 56.8 14.4 155 13-187 148-331 (404)
237 PF03215 Rad17: Rad17 cell cyc 97.4 0.00087 1.9E-08 72.0 10.9 64 7-75 15-78 (519)
238 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00015 3.2E-09 72.9 4.5 49 12-60 52-100 (361)
239 KOG2982 Uncharacterized conser 97.4 3.6E-05 7.8E-10 72.8 -0.1 60 458-517 69-131 (418)
240 COG1484 DnaC DNA replication p 97.4 0.00057 1.2E-08 66.7 7.9 80 37-133 104-183 (254)
241 KOG0735 AAA+-type ATPase [Post 97.4 0.0024 5.2E-08 68.2 12.8 163 37-221 430-617 (952)
242 PF04665 Pox_A32: Poxvirus A32 97.4 0.00042 9.2E-09 65.8 6.6 37 38-76 13-49 (241)
243 KOG2035 Replication factor C, 97.3 0.00077 1.7E-08 63.4 7.9 182 12-215 14-223 (351)
244 KOG0531 Protein phosphatase 1, 97.3 6.2E-05 1.4E-09 80.2 0.9 166 374-562 95-263 (414)
245 KOG0733 Nuclear AAA ATPase (VC 97.3 0.0027 5.8E-08 66.6 12.5 132 38-189 545-694 (802)
246 PRK09361 radB DNA repair and r 97.3 0.0013 2.8E-08 63.7 9.8 47 36-85 21-67 (225)
247 TIGR02237 recomb_radB DNA repa 97.3 0.001 2.2E-08 63.6 8.8 49 36-87 10-58 (209)
248 KOG0739 AAA+-type ATPase [Post 97.3 0.0056 1.2E-07 58.4 12.8 102 6-128 128-236 (439)
249 KOG0734 AAA+-type ATPase conta 97.3 0.0011 2.4E-08 68.2 8.6 160 8-187 301-484 (752)
250 KOG0731 AAA+-type ATPase conta 97.3 0.005 1.1E-07 67.6 14.1 188 5-216 305-520 (774)
251 PF07724 AAA_2: AAA domain (Cd 97.2 0.00025 5.5E-09 64.5 3.5 91 38-143 3-105 (171)
252 COG2884 FtsE Predicted ATPase 97.2 0.0042 9E-08 55.4 10.6 61 103-163 141-203 (223)
253 cd01120 RecA-like_NTPases RecA 97.2 0.0021 4.5E-08 58.7 9.5 38 41-80 2-39 (165)
254 KOG3665 ZYG-1-like serine/thre 97.2 0.00021 4.6E-09 79.6 3.2 134 396-542 121-261 (699)
255 PHA00729 NTP-binding motif con 97.2 0.0018 3.9E-08 60.8 8.9 24 37-60 16-39 (226)
256 TIGR02974 phageshock_pspF psp 97.2 0.002 4.4E-08 65.7 10.0 132 13-156 1-143 (329)
257 PRK05541 adenylylsulfate kinas 97.2 0.0019 4.2E-08 59.7 9.1 38 36-75 5-42 (176)
258 KOG4579 Leucine-rich repeat (L 97.2 0.00011 2.3E-09 61.3 0.6 108 378-502 31-141 (177)
259 PRK11889 flhF flagellar biosyn 97.2 0.0052 1.1E-07 62.4 12.4 91 36-128 239-331 (436)
260 TIGR02012 tigrfam_recA protein 97.1 0.0015 3.3E-08 65.3 8.3 85 35-126 52-142 (321)
261 KOG0727 26S proteasome regulat 97.1 0.011 2.4E-07 54.8 13.0 101 8-128 152-259 (408)
262 PRK06696 uridine kinase; Valid 97.1 0.0012 2.5E-08 63.7 7.3 48 15-67 2-49 (223)
263 TIGR01817 nifA Nif-specific re 97.1 0.0025 5.5E-08 70.4 10.8 135 8-156 193-340 (534)
264 cd00983 recA RecA is a bacter 97.1 0.0017 3.6E-08 65.1 8.2 84 36-126 53-142 (325)
265 cd01393 recA_like RecA is a b 97.1 0.0034 7.4E-08 60.9 10.5 49 36-86 17-71 (226)
266 PRK07261 topology modulation p 97.1 0.0012 2.6E-08 60.4 6.7 21 40-60 2-22 (171)
267 PF13604 AAA_30: AAA domain; P 97.1 0.00066 1.4E-08 63.7 5.1 110 38-159 18-133 (196)
268 KOG0652 26S proteasome regulat 97.1 0.018 3.9E-07 53.8 13.8 50 11-60 171-227 (424)
269 COG1136 SalX ABC-type antimicr 97.1 0.005 1.1E-07 57.8 10.5 129 38-171 31-215 (226)
270 cd01394 radB RadB. The archaea 97.1 0.0033 7.1E-08 60.5 9.7 43 36-80 17-59 (218)
271 KOG0729 26S proteasome regulat 97.1 0.0032 7E-08 58.8 8.9 60 7-68 173-239 (435)
272 PRK11608 pspF phage shock prot 97.1 0.0015 3.3E-08 66.7 7.5 134 11-156 6-150 (326)
273 KOG1051 Chaperone HSP104 and r 97.0 0.0037 8E-08 70.2 10.9 123 11-144 562-687 (898)
274 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0031 6.8E-08 61.6 9.3 51 36-86 17-71 (235)
275 PRK09354 recA recombinase A; P 97.0 0.0025 5.4E-08 64.3 8.6 85 35-126 57-147 (349)
276 PF10236 DAP3: Mitochondrial r 97.0 0.017 3.7E-07 58.4 14.5 49 168-217 258-306 (309)
277 COG0464 SpoVK ATPases of the A 97.0 0.0054 1.2E-07 67.2 11.9 133 36-188 274-424 (494)
278 PHA02244 ATPase-like protein 97.0 0.0023 5.1E-08 64.4 8.0 22 39-60 120-141 (383)
279 TIGR00708 cobA cob(I)alamin ad 97.0 0.0049 1.1E-07 55.3 9.3 118 38-157 5-140 (173)
280 COG1126 GlnQ ABC-type polar am 97.0 0.008 1.7E-07 55.0 10.6 123 38-163 28-202 (240)
281 PRK15429 formate hydrogenlyase 97.0 0.0029 6.2E-08 72.2 9.6 136 9-156 374-520 (686)
282 COG4608 AppF ABC-type oligopep 97.0 0.005 1.1E-07 58.8 9.4 124 37-163 38-176 (268)
283 cd03214 ABC_Iron-Siderophores_ 97.0 0.0057 1.2E-07 56.7 9.9 120 38-160 25-161 (180)
284 KOG0743 AAA+-type ATPase [Post 97.0 0.032 6.9E-07 57.2 15.5 153 40-227 237-416 (457)
285 PF00448 SRP54: SRP54-type pro 96.9 0.0048 1E-07 57.6 9.2 88 38-127 1-93 (196)
286 PRK07132 DNA polymerase III su 96.9 0.04 8.7E-07 55.0 16.0 155 37-220 17-185 (299)
287 COG5238 RNA1 Ran GTPase-activa 96.9 0.00016 3.5E-09 67.5 -0.7 39 479-517 88-130 (388)
288 PRK08118 topology modulation p 96.9 0.0011 2.4E-08 60.3 4.7 34 40-73 3-37 (167)
289 PRK05480 uridine/cytidine kina 96.9 0.0092 2E-07 56.9 11.3 25 36-60 4-28 (209)
290 PF13207 AAA_17: AAA domain; P 96.9 0.00067 1.5E-08 58.3 2.9 21 40-60 1-21 (121)
291 cd03228 ABCC_MRP_Like The MRP 96.9 0.0061 1.3E-07 56.0 9.3 117 38-161 28-159 (171)
292 TIGR01650 PD_CobS cobaltochela 96.9 0.021 4.6E-07 57.1 13.4 61 12-85 46-106 (327)
293 KOG2123 Uncharacterized conser 96.9 0.00017 3.8E-09 67.6 -1.0 100 395-513 17-123 (388)
294 cd03247 ABCC_cytochrome_bd The 96.9 0.0038 8.2E-08 57.8 7.9 118 38-161 28-161 (178)
295 cd01122 GP4d_helicase GP4d_hel 96.9 0.012 2.5E-07 59.0 11.9 52 38-93 30-82 (271)
296 PRK05022 anaerobic nitric oxid 96.8 0.0044 9.6E-08 67.8 9.4 136 9-156 185-331 (509)
297 PRK06067 flagellar accessory p 96.8 0.0059 1.3E-07 59.4 9.4 87 36-127 23-130 (234)
298 COG0465 HflB ATP-dependent Zn 96.8 0.011 2.4E-07 63.6 11.9 183 6-214 145-355 (596)
299 PRK15455 PrkA family serine pr 96.8 0.0007 1.5E-08 71.7 3.0 50 11-60 76-125 (644)
300 PRK10733 hflB ATP-dependent me 96.8 0.011 2.5E-07 66.3 12.7 158 12-189 153-337 (644)
301 PF01583 APS_kinase: Adenylyls 96.8 0.00043 9.4E-09 61.0 1.2 36 38-75 2-37 (156)
302 TIGR02238 recomb_DMC1 meiotic 96.8 0.005 1.1E-07 62.0 8.9 58 36-94 94-155 (313)
303 PRK06762 hypothetical protein; 96.8 0.035 7.6E-07 50.7 13.7 23 38-60 2-24 (166)
304 COG1875 NYN ribonuclease and A 96.8 0.0066 1.4E-07 59.9 9.0 131 15-158 228-389 (436)
305 KOG1947 Leucine rich repeat pr 96.8 0.00051 1.1E-08 75.6 1.7 117 396-520 187-308 (482)
306 PRK12723 flagellar biosynthesi 96.8 0.012 2.5E-07 61.0 11.3 91 36-128 172-265 (388)
307 COG0468 RecA RecA/RadA recombi 96.8 0.0081 1.8E-07 58.7 9.5 90 35-126 57-150 (279)
308 PRK05703 flhF flagellar biosyn 96.8 0.017 3.7E-07 61.0 12.7 86 38-127 221-309 (424)
309 PTZ00494 tuzin-like protein; P 96.7 0.096 2.1E-06 53.6 16.7 170 6-187 366-544 (664)
310 COG0714 MoxR-like ATPases [Gen 96.7 0.0027 5.9E-08 65.3 6.4 113 13-143 26-138 (329)
311 CHL00206 ycf2 Ycf2; Provisiona 96.7 0.023 5E-07 68.4 14.4 25 37-61 1629-1653(2281)
312 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0084 1.8E-07 58.3 9.0 88 37-126 68-172 (274)
313 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.013 2.8E-07 51.9 9.6 105 38-161 26-131 (144)
314 cd03216 ABC_Carb_Monos_I This 96.7 0.0053 1.2E-07 55.8 7.3 116 38-160 26-145 (163)
315 KOG0736 Peroxisome assembly fa 96.7 0.048 1E-06 59.3 15.1 103 5-128 666-775 (953)
316 PF10923 DUF2791: P-loop Domai 96.7 0.013 2.9E-07 60.6 10.7 108 1-113 14-130 (416)
317 KOG2123 Uncharacterized conser 96.7 0.00012 2.5E-09 68.8 -3.7 96 648-752 18-123 (388)
318 PRK05986 cob(I)alamin adenolsy 96.7 0.0096 2.1E-07 54.3 8.6 118 38-157 22-158 (191)
319 TIGR03499 FlhF flagellar biosy 96.7 0.0084 1.8E-07 59.8 9.1 86 37-126 193-281 (282)
320 cd03246 ABCC_Protease_Secretio 96.7 0.0088 1.9E-07 55.0 8.6 119 38-161 28-160 (173)
321 PF07726 AAA_3: ATPase family 96.7 0.00081 1.8E-08 56.3 1.5 101 41-157 2-112 (131)
322 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.015 3.3E-07 56.5 10.5 50 36-89 19-68 (237)
323 cd01131 PilT Pilus retraction 96.6 0.0039 8.4E-08 58.7 6.2 110 39-159 2-111 (198)
324 PRK00771 signal recognition pa 96.6 0.016 3.4E-07 61.1 11.2 89 36-127 93-185 (437)
325 cd03223 ABCD_peroxisomal_ALDP 96.6 0.018 4E-07 52.4 10.5 115 38-160 27-151 (166)
326 PRK14722 flhF flagellar biosyn 96.6 0.0078 1.7E-07 61.7 8.6 88 37-128 136-226 (374)
327 PRK00889 adenylylsulfate kinas 96.6 0.015 3.2E-07 53.7 9.9 35 38-74 4-38 (175)
328 PF08423 Rad51: Rad51; InterP 96.6 0.0054 1.2E-07 60.1 7.2 56 37-93 37-96 (256)
329 PRK14974 cell division protein 96.6 0.017 3.7E-07 58.6 10.9 90 36-128 138-233 (336)
330 PRK12724 flagellar biosynthesi 96.6 0.012 2.5E-07 60.8 9.7 24 37-60 222-245 (432)
331 cd03238 ABC_UvrA The excision 96.6 0.012 2.6E-07 53.8 8.9 114 38-161 21-153 (176)
332 PLN03187 meiotic recombination 96.6 0.0098 2.1E-07 60.4 9.1 59 36-95 124-186 (344)
333 PRK08533 flagellar accessory p 96.6 0.018 3.9E-07 55.6 10.6 49 37-89 23-71 (230)
334 PF08298 AAA_PrkA: PrkA AAA do 96.6 0.003 6.5E-08 62.9 5.2 51 10-60 60-110 (358)
335 cd02027 APSK Adenosine 5'-phos 96.6 0.006 1.3E-07 54.4 6.7 21 40-60 1-21 (149)
336 PRK07667 uridine kinase; Provi 96.6 0.0054 1.2E-07 57.5 6.6 51 20-76 3-53 (193)
337 COG4618 ArpD ABC-type protease 96.5 0.02 4.4E-07 59.2 10.8 23 38-60 362-384 (580)
338 cd03222 ABC_RNaseL_inhibitor T 96.5 0.013 2.8E-07 53.6 8.8 109 38-161 25-136 (177)
339 cd03115 SRP The signal recogni 96.5 0.01 2.2E-07 54.8 8.2 85 40-126 2-91 (173)
340 PRK08233 hypothetical protein; 96.5 0.0076 1.7E-07 56.1 7.4 23 38-60 3-25 (182)
341 PRK05917 DNA polymerase III su 96.5 0.068 1.5E-06 52.7 14.0 134 20-174 6-154 (290)
342 cd00544 CobU Adenosylcobinamid 96.5 0.0035 7.5E-08 56.9 4.8 78 41-126 2-82 (169)
343 cd01121 Sms Sms (bacterial rad 96.5 0.015 3.2E-07 60.2 9.8 82 37-126 81-167 (372)
344 COG1121 ZnuC ABC-type Mn/Zn tr 96.5 0.018 4E-07 55.0 9.7 119 38-158 30-200 (254)
345 PF12775 AAA_7: P-loop contain 96.5 0.0022 4.8E-08 63.3 3.6 79 38-128 33-111 (272)
346 PRK10820 DNA-binding transcrip 96.5 0.0061 1.3E-07 66.7 7.3 155 8-177 201-380 (520)
347 COG1618 Predicted nucleotide k 96.5 0.0041 8.8E-08 53.8 4.5 30 38-69 5-35 (179)
348 TIGR00382 clpX endopeptidase C 96.5 0.019 4.1E-07 59.8 10.3 49 12-60 78-138 (413)
349 KOG1644 U2-associated snRNP A' 96.5 0.0024 5.1E-08 57.5 3.2 85 423-517 60-150 (233)
350 COG0529 CysC Adenylylsulfate k 96.4 0.0068 1.5E-07 53.4 5.9 31 36-68 21-51 (197)
351 PRK05973 replicative DNA helic 96.4 0.019 4E-07 55.0 9.4 49 37-89 63-111 (237)
352 PF13671 AAA_33: AAA domain; P 96.4 0.0083 1.8E-07 53.2 6.8 21 40-60 1-21 (143)
353 TIGR02239 recomb_RAD51 DNA rep 96.4 0.018 3.8E-07 58.3 9.8 57 36-93 94-154 (316)
354 PRK12726 flagellar biosynthesi 96.4 0.034 7.5E-07 56.4 11.5 91 36-128 204-296 (407)
355 PRK05439 pantothenate kinase; 96.4 0.028 6.1E-07 56.1 10.9 81 35-118 83-166 (311)
356 PLN03186 DNA repair protein RA 96.4 0.014 3.1E-07 59.3 9.0 58 36-94 121-182 (342)
357 cd03230 ABC_DR_subfamily_A Thi 96.4 0.0084 1.8E-07 55.2 6.8 118 38-161 26-159 (173)
358 COG1066 Sms Predicted ATP-depe 96.4 0.0085 1.8E-07 60.3 6.9 96 20-128 79-179 (456)
359 cd03282 ABC_MSH4_euk MutS4 hom 96.4 0.0089 1.9E-07 56.3 6.9 119 38-163 29-157 (204)
360 TIGR02858 spore_III_AA stage I 96.4 0.046 1E-06 53.7 12.0 128 19-160 97-232 (270)
361 TIGR00554 panK_bact pantothena 96.4 0.019 4.1E-07 56.9 9.3 26 35-60 59-84 (290)
362 TIGR00390 hslU ATP-dependent p 96.4 0.0077 1.7E-07 61.8 6.6 50 11-60 12-69 (441)
363 PF00485 PRK: Phosphoribulokin 96.4 0.014 3.1E-07 54.8 8.1 80 40-121 1-87 (194)
364 PRK10867 signal recognition pa 96.4 0.016 3.5E-07 60.8 9.2 41 36-78 98-139 (433)
365 TIGR00064 ftsY signal recognit 96.3 0.024 5.1E-07 56.1 9.9 90 36-127 70-164 (272)
366 KOG0735 AAA+-type ATPase [Post 96.3 0.087 1.9E-06 56.9 14.3 179 10-214 666-870 (952)
367 PTZ00035 Rad51 protein; Provis 96.3 0.025 5.4E-07 57.8 10.3 58 36-94 116-177 (337)
368 COG2274 SunT ABC-type bacterio 96.3 0.034 7.4E-07 62.4 12.1 23 38-60 499-521 (709)
369 PRK07276 DNA polymerase III su 96.3 0.13 2.8E-06 51.0 14.7 69 116-185 103-173 (290)
370 COG5238 RNA1 Ran GTPase-activa 96.3 0.0018 4E-08 60.8 1.7 45 501-545 86-134 (388)
371 PRK11388 DNA-binding transcrip 96.3 0.013 2.7E-07 66.5 8.8 119 10-143 324-442 (638)
372 COG1116 TauB ABC-type nitrate/ 96.3 0.02 4.4E-07 54.0 8.5 23 38-60 29-51 (248)
373 COG4088 Predicted nucleotide k 96.3 0.052 1.1E-06 49.2 10.5 128 40-187 3-139 (261)
374 TIGR02329 propionate_PrpR prop 96.3 0.0081 1.8E-07 65.1 6.8 132 11-156 212-357 (526)
375 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.013 2.9E-07 57.6 7.7 41 36-78 34-74 (259)
376 COG0396 sufC Cysteine desulfur 96.3 0.017 3.8E-07 53.4 7.7 61 107-167 152-214 (251)
377 COG1102 Cmk Cytidylate kinase 96.3 0.011 2.3E-07 51.3 5.9 44 40-96 2-45 (179)
378 cd03229 ABC_Class3 This class 96.3 0.013 2.9E-07 54.1 7.2 23 38-60 26-48 (178)
379 cd02025 PanK Pantothenate kina 96.2 0.02 4.3E-07 54.8 8.5 38 40-79 1-40 (220)
380 PRK13695 putative NTPase; Prov 96.2 0.01 2.2E-07 54.7 6.3 21 40-60 2-22 (174)
381 PF03969 AFG1_ATPase: AFG1-lik 96.2 0.0057 1.2E-07 62.8 4.9 106 36-155 60-166 (362)
382 cd00267 ABC_ATPase ABC (ATP-bi 96.2 0.014 3E-07 52.8 6.9 117 38-162 25-145 (157)
383 PRK03846 adenylylsulfate kinas 96.2 0.014 3E-07 55.1 7.0 37 36-74 22-58 (198)
384 PF00910 RNA_helicase: RNA hel 96.2 0.003 6.4E-08 52.6 2.2 21 41-61 1-21 (107)
385 cd03369 ABCC_NFT1 Domain 2 of 96.2 0.071 1.5E-06 50.8 12.0 23 38-60 34-56 (207)
386 PRK11823 DNA repair protein Ra 96.2 0.042 9.1E-07 58.7 11.3 82 37-126 79-165 (446)
387 PF13238 AAA_18: AAA domain; P 96.2 0.0035 7.5E-08 54.5 2.7 20 41-60 1-20 (129)
388 COG4133 CcmA ABC-type transpor 96.2 0.062 1.4E-06 48.1 10.3 23 38-60 28-50 (209)
389 KOG1644 U2-associated snRNP A' 96.2 0.0036 7.7E-08 56.4 2.6 81 460-542 42-124 (233)
390 COG0572 Udk Uridine kinase [Nu 96.1 0.013 2.8E-07 54.4 6.3 30 36-67 6-35 (218)
391 KOG0742 AAA+-type ATPase [Post 96.1 0.033 7.1E-07 55.8 9.3 25 36-60 382-406 (630)
392 PRK12727 flagellar biosynthesi 96.1 0.031 6.7E-07 59.4 9.7 87 37-127 349-438 (559)
393 KOG1947 Leucine rich repeat pr 96.1 0.00048 1E-08 75.9 -3.8 61 458-518 186-254 (482)
394 TIGR00959 ffh signal recogniti 96.1 0.034 7.3E-07 58.5 10.0 40 37-78 98-138 (428)
395 PRK09270 nucleoside triphospha 96.1 0.029 6.2E-07 54.3 9.0 26 35-60 30-55 (229)
396 PRK04301 radA DNA repair and r 96.1 0.031 6.8E-07 57.1 9.6 53 36-88 100-156 (317)
397 PRK15424 propionate catabolism 96.1 0.013 2.8E-07 63.6 7.0 46 11-60 219-264 (538)
398 PRK13539 cytochrome c biogenes 96.1 0.024 5.3E-07 53.9 8.3 24 38-61 28-51 (207)
399 KOG2739 Leucine-rich acidic nu 96.1 0.0032 7E-08 59.2 2.0 61 458-519 63-128 (260)
400 TIGR00150 HI0065_YjeE ATPase, 96.0 0.0082 1.8E-07 51.5 4.2 40 18-61 6-45 (133)
401 PF00154 RecA: recA bacterial 96.0 0.012 2.6E-07 58.7 6.1 85 35-126 50-140 (322)
402 cd02019 NK Nucleoside/nucleoti 96.0 0.0047 1E-07 46.5 2.4 21 40-60 1-21 (69)
403 cd01125 repA Hexameric Replica 96.0 0.055 1.2E-06 52.8 10.5 143 40-182 3-199 (239)
404 PRK04328 hypothetical protein; 96.0 0.025 5.4E-07 55.4 8.0 40 37-78 22-61 (249)
405 KOG0651 26S proteasome regulat 96.0 0.014 3E-07 56.3 5.8 31 36-68 164-194 (388)
406 TIGR02236 recomb_radA DNA repa 96.0 0.032 6.9E-07 56.9 9.1 57 36-93 93-153 (310)
407 COG2401 ABC-type ATPase fused 96.0 0.015 3.3E-07 58.3 6.3 129 38-166 409-577 (593)
408 PF08433 KTI12: Chromatin asso 96.0 0.019 4.1E-07 56.5 7.0 33 40-74 3-35 (270)
409 KOG0726 26S proteasome regulat 96.0 0.029 6.4E-07 53.4 7.8 50 12-61 186-242 (440)
410 TIGR00455 apsK adenylylsulfate 96.0 0.047 1E-06 50.8 9.4 24 37-60 17-40 (184)
411 PRK10416 signal recognition pa 95.9 0.029 6.4E-07 56.7 8.4 38 37-76 113-150 (318)
412 PLN02348 phosphoribulokinase 95.9 0.064 1.4E-06 54.9 10.8 26 35-60 46-71 (395)
413 PTZ00088 adenylate kinase 1; P 95.9 0.0093 2E-07 57.1 4.5 22 39-60 7-28 (229)
414 KOG3928 Mitochondrial ribosome 95.9 0.23 5E-06 50.2 14.1 58 166-224 403-460 (461)
415 cd03281 ABC_MSH5_euk MutS5 hom 95.9 0.015 3.2E-07 55.4 5.8 23 38-60 29-51 (213)
416 PRK09519 recA DNA recombinatio 95.9 0.028 6E-07 63.0 8.7 85 36-127 58-148 (790)
417 PRK05201 hslU ATP-dependent pr 95.9 0.017 3.6E-07 59.5 6.4 50 11-60 15-72 (443)
418 cd03237 ABC_RNaseL_inhibitor_d 95.9 0.052 1.1E-06 53.1 9.8 24 38-61 25-48 (246)
419 cd00984 DnaB_C DnaB helicase C 95.9 0.059 1.3E-06 52.8 10.3 52 37-92 12-64 (242)
420 PRK10875 recD exonuclease V su 95.9 0.034 7.5E-07 61.4 9.3 23 38-60 167-189 (615)
421 PRK06547 hypothetical protein; 95.9 0.012 2.5E-07 53.7 4.8 25 36-60 13-37 (172)
422 PF13479 AAA_24: AAA domain 95.9 0.032 6.9E-07 53.2 8.0 32 38-79 3-34 (213)
423 cd03233 ABC_PDR_domain1 The pl 95.9 0.08 1.7E-06 50.1 10.6 24 38-61 33-56 (202)
424 PF03308 ArgK: ArgK protein; 95.9 0.02 4.4E-07 54.4 6.3 51 19-75 14-64 (266)
425 cd03245 ABCC_bacteriocin_expor 95.9 0.074 1.6E-06 51.2 10.6 25 37-61 29-53 (220)
426 PRK06217 hypothetical protein; 95.9 0.026 5.5E-07 52.5 7.1 21 40-60 3-23 (183)
427 cd03254 ABCC_Glucan_exporter_l 95.9 0.083 1.8E-06 51.2 11.0 24 38-61 29-52 (229)
428 PF13245 AAA_19: Part of AAA d 95.8 0.016 3.5E-07 44.3 4.7 23 38-60 10-33 (76)
429 TIGR00764 lon_rel lon-related 95.8 0.019 4.1E-07 63.7 7.1 75 10-95 17-92 (608)
430 PF00006 ATP-synt_ab: ATP synt 95.8 0.029 6.3E-07 52.9 7.4 83 38-126 15-114 (215)
431 PRK13540 cytochrome c biogenes 95.8 0.06 1.3E-06 50.9 9.7 24 38-61 27-50 (200)
432 PF06309 Torsin: Torsin; Inte 95.8 0.014 3E-07 48.9 4.5 47 12-61 26-76 (127)
433 TIGR03881 KaiC_arch_4 KaiC dom 95.8 0.044 9.6E-07 53.2 9.0 47 36-86 18-64 (229)
434 PF09848 DUF2075: Uncharacteri 95.8 0.03 6.5E-07 58.2 8.2 39 39-79 2-42 (352)
435 COG5635 Predicted NTPase (NACH 95.8 0.0069 1.5E-07 70.3 3.8 196 38-239 222-446 (824)
436 PTZ00301 uridine kinase; Provi 95.8 0.013 2.9E-07 55.2 5.0 23 38-60 3-25 (210)
437 cd03244 ABCC_MRP_domain2 Domai 95.8 0.09 1.9E-06 50.7 11.0 23 38-60 30-52 (221)
438 cd03263 ABC_subfamily_A The AB 95.8 0.054 1.2E-06 52.2 9.4 23 38-60 28-50 (220)
439 PRK04040 adenylate kinase; Pro 95.8 0.0089 1.9E-07 55.5 3.7 23 38-60 2-24 (188)
440 COG0563 Adk Adenylate kinase a 95.8 0.015 3.3E-07 53.2 5.2 21 40-60 2-22 (178)
441 TIGR02655 circ_KaiC circadian 95.8 0.074 1.6E-06 57.8 11.3 62 20-89 249-310 (484)
442 COG4619 ABC-type uncharacteriz 95.8 0.08 1.7E-06 46.4 9.0 22 39-60 30-51 (223)
443 COG2842 Uncharacterized ATPase 95.8 0.19 4.2E-06 48.8 12.6 126 5-143 66-191 (297)
444 PRK10463 hydrogenase nickel in 95.8 0.04 8.7E-07 54.1 8.2 86 36-127 102-194 (290)
445 TIGR00416 sms DNA repair prote 95.8 0.081 1.8E-06 56.6 11.2 41 36-78 92-132 (454)
446 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.8 0.067 1.5E-06 51.6 9.8 25 37-61 47-71 (224)
447 COG4181 Predicted ABC-type tra 95.8 0.21 4.5E-06 44.1 11.4 126 38-164 36-214 (228)
448 PRK06002 fliI flagellum-specif 95.7 0.047 1E-06 57.2 9.1 86 38-126 165-263 (450)
449 cd03215 ABC_Carb_Monos_II This 95.7 0.03 6.5E-07 52.0 7.1 23 38-60 26-48 (182)
450 cd03217 ABC_FeS_Assembly ABC-t 95.7 0.062 1.3E-06 50.8 9.3 24 38-61 26-49 (200)
451 cd02028 UMPK_like Uridine mono 95.7 0.02 4.3E-07 52.8 5.8 21 40-60 1-21 (179)
452 PF02374 ArsA_ATPase: Anion-tr 95.7 0.013 2.9E-07 58.9 4.9 44 39-84 2-45 (305)
453 cd01124 KaiC KaiC is a circadi 95.7 0.02 4.4E-07 53.5 5.9 44 41-88 2-45 (187)
454 cd03283 ABC_MutS-like MutS-lik 95.7 0.062 1.4E-06 50.5 9.0 22 39-60 26-47 (199)
455 COG0467 RAD55 RecA-superfamily 95.7 0.026 5.7E-07 55.9 6.9 52 36-91 21-72 (260)
456 TIGR00235 udk uridine kinase. 95.6 0.01 2.2E-07 56.5 3.6 24 37-60 5-28 (207)
457 PRK10923 glnG nitrogen regulat 95.6 0.027 5.9E-07 61.5 7.5 134 11-156 138-282 (469)
458 COG4240 Predicted kinase [Gene 95.6 0.051 1.1E-06 49.9 7.7 82 35-118 47-134 (300)
459 KOG2170 ATPase of the AAA+ sup 95.6 0.028 6E-07 54.1 6.3 39 20-61 95-133 (344)
460 PRK13765 ATP-dependent proteas 95.6 0.018 3.9E-07 63.7 5.8 79 6-95 26-105 (637)
461 cd01135 V_A-ATPase_B V/A-type 95.6 0.052 1.1E-06 52.8 8.3 90 37-126 68-175 (276)
462 PRK00131 aroK shikimate kinase 95.6 0.0086 1.9E-07 55.3 2.9 23 38-60 4-26 (175)
463 cd03226 ABC_cobalt_CbiO_domain 95.6 0.094 2E-06 49.8 10.1 24 38-61 26-49 (205)
464 KOG2739 Leucine-rich acidic nu 95.6 0.0077 1.7E-07 56.8 2.5 65 423-494 61-127 (260)
465 cd01129 PulE-GspE PulE/GspE Th 95.6 0.036 7.8E-07 54.6 7.3 81 38-128 80-160 (264)
466 PRK03839 putative kinase; Prov 95.6 0.0084 1.8E-07 55.7 2.8 21 40-60 2-22 (180)
467 PF13481 AAA_25: AAA domain; P 95.6 0.065 1.4E-06 50.4 8.9 42 38-79 32-81 (193)
468 PRK13657 cyclic beta-1,2-gluca 95.6 0.1 2.2E-06 58.8 11.9 23 38-60 361-383 (588)
469 TIGR01425 SRP54_euk signal rec 95.6 0.071 1.5E-06 55.8 9.7 39 36-76 98-136 (429)
470 KOG1970 Checkpoint RAD17-RFC c 95.6 0.022 4.9E-07 59.4 5.9 47 13-60 84-132 (634)
471 PRK05818 DNA polymerase III su 95.6 0.14 2.9E-06 49.4 10.8 58 117-174 88-147 (261)
472 PF03193 DUF258: Protein of un 95.6 0.018 3.8E-07 51.2 4.5 36 17-61 23-58 (161)
473 PF00560 LRR_1: Leucine Rich R 95.5 0.0033 7.2E-08 34.8 -0.1 9 485-493 2-10 (22)
474 COG0003 ArsA Predicted ATPase 95.5 0.023 5E-07 57.0 5.8 47 38-86 2-48 (322)
475 cd00227 CPT Chloramphenicol (C 95.5 0.011 2.3E-07 54.6 3.2 22 39-60 3-24 (175)
476 PF01078 Mg_chelatase: Magnesi 95.5 0.019 4.2E-07 53.0 4.7 43 10-60 2-44 (206)
477 cd03253 ABCC_ATM1_transporter 95.5 0.11 2.4E-06 50.6 10.5 24 38-61 27-50 (236)
478 PRK00625 shikimate kinase; Pro 95.5 0.0094 2E-07 54.3 2.7 21 40-60 2-22 (173)
479 TIGR03574 selen_PSTK L-seryl-t 95.5 0.032 7E-07 54.8 6.7 20 41-60 2-21 (249)
480 PRK13407 bchI magnesium chelat 95.5 0.013 2.9E-07 59.4 3.9 48 7-60 4-51 (334)
481 COG0194 Gmk Guanylate kinase [ 95.5 0.013 2.8E-07 52.5 3.3 24 38-61 4-27 (191)
482 TIGR01818 ntrC nitrogen regula 95.5 0.084 1.8E-06 57.6 10.5 161 11-185 134-320 (463)
483 PRK06731 flhF flagellar biosyn 95.5 0.14 3.1E-06 50.2 10.9 88 38-128 75-165 (270)
484 PF00625 Guanylate_kin: Guanyl 95.5 0.013 2.7E-07 54.6 3.4 37 38-76 2-38 (183)
485 cd03251 ABCC_MsbA MsbA is an e 95.4 0.13 2.8E-06 50.1 10.7 24 38-61 28-51 (234)
486 PRK15453 phosphoribulokinase; 95.4 0.093 2E-06 51.1 9.2 77 37-115 4-88 (290)
487 KOG1532 GTPase XAB1, interacts 95.4 0.079 1.7E-06 50.2 8.4 60 35-96 16-86 (366)
488 TIGR03522 GldA_ABC_ATP gliding 95.4 0.12 2.5E-06 52.5 10.5 24 38-61 28-51 (301)
489 PF13086 AAA_11: AAA domain; P 95.4 0.024 5.2E-07 55.3 5.5 50 40-91 19-75 (236)
490 COG1428 Deoxynucleoside kinase 95.4 0.028 6.1E-07 51.5 5.3 49 38-91 4-52 (216)
491 cd03231 ABC_CcmA_heme_exporter 95.4 0.11 2.4E-06 49.1 9.8 24 38-61 26-49 (201)
492 PHA02774 E1; Provisional 95.4 0.064 1.4E-06 57.4 8.7 37 36-76 432-468 (613)
493 TIGR01447 recD exodeoxyribonuc 95.4 0.029 6.3E-07 61.8 6.5 23 38-60 160-182 (586)
494 TIGR01313 therm_gnt_kin carboh 95.4 0.026 5.7E-07 51.3 5.2 20 41-60 1-20 (163)
495 COG1643 HrpA HrpA-like helicas 95.4 0.12 2.6E-06 58.7 11.3 127 17-156 52-204 (845)
496 PRK14737 gmk guanylate kinase; 95.4 0.016 3.4E-07 53.7 3.8 24 37-60 3-26 (186)
497 cd03232 ABC_PDR_domain2 The pl 95.4 0.073 1.6E-06 49.9 8.3 23 38-60 33-55 (192)
498 TIGR02868 CydC thiol reductant 95.4 0.12 2.5E-06 57.5 11.2 24 37-60 360-383 (529)
499 cd03213 ABCG_EPDR ABCG transpo 95.3 0.087 1.9E-06 49.5 8.7 23 38-60 35-57 (194)
500 COG3910 Predicted ATPase [Gene 95.3 0.21 4.5E-06 44.8 10.2 24 37-60 36-59 (233)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-67 Score=581.05 Aligned_cols=616 Identities=29% Similarity=0.450 Sum_probs=469.1
Q ss_pred cccCCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChh-hhccCCeeEEEEecCCCC
Q 042791 3 RTISLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDE-VKRNFEKVIWVCVSNTFD 81 (761)
Q Consensus 3 ~~~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~-~~~~f~~~~~v~~~~~~~ 81 (761)
...|.....+ ||.+..++++.+.|...+ .++++|+||||+||||||++++++.. ++.+|+.++||.+++.++
T Consensus 151 e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~ 223 (889)
T KOG4658|consen 151 ETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFT 223 (889)
T ss_pred ccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEccccc
Confidence 3445555555 999999999999998543 48999999999999999999999866 889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCC--cHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchhh
Q 042791 82 QIRIAKAIIEGLGESASGLN--EFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESV 159 (761)
Q Consensus 82 ~~~~~~~i~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~ 159 (761)
...+..+|+..++.....-. ..++....+.+.++.+|++||+||||+. ..|+.+..++|....|+||++|||++.+
T Consensus 224 ~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V 301 (889)
T KOG4658|consen 224 TRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEV 301 (889)
T ss_pred HHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhh
Confidence 99999999999887443322 2367888899999999999999999985 4599999999988889999999999999
Q ss_pred hhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHHhhCCCCHHHHHHHHh
Q 042791 160 ARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSKSTVKEWQRILE 238 (761)
Q Consensus 160 ~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~ 238 (761)
+.. ++....++++.|+.+|||.+|.+.++...... .+...+++++|+++|+|+|||+.++|+.|+.+.+.++|.++.+
T Consensus 302 ~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~-~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~ 380 (889)
T KOG4658|consen 302 CGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGS-HPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALN 380 (889)
T ss_pred hhccccCCccccccccCccccHHHHHHhhccccccc-cccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHc
Confidence 988 77788999999999999999999998653322 2347899999999999999999999999999999999999998
Q ss_pred hhhhccc----ccccccccchhcccCCCCCCcchhHHhhhhcCCCCCcccCHHHHHHHHHHcCCcccCC-cchHHHHHHH
Q 042791 239 SEMWKVQ----EIGQDLLAPLLLSYNDLPSNSMVKQCFSYCTVFPKDCIMNKEKLIDLWMAQGYLNADE-DEEMETIGEE 313 (761)
Q Consensus 239 ~~~~~~~----~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~g~~~~~~-~~~~~~~~~~ 313 (761)
....... ...+.++.++..||+.|++ ++|.||+|||.||+|+.|+++.++.+|+++||+...+ +..+++.+++
T Consensus 381 ~l~s~~~~~~~~~~~~i~~iLklSyd~L~~--~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~ 458 (889)
T KOG4658|consen 381 VLKSSLAADFSGMEESILPILKLSYDNLPE--ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYD 458 (889)
T ss_pred cccccccCCCCchhhhhHHhhhccHhhhhH--HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHH
Confidence 7655522 2346788999999999996 9999999999999999999999999999999998844 4678999999
Q ss_pred HHHHHHhcCCccccccCCCCCeeEEEEchHHHHHHHHHhc-----cceEEEeeC-CcccccccCCCCceEEEEEeecCCC
Q 042791 314 YFNILATRSFFQEFEKNDDDNIRSCKMHDIVHDFAQFVSS-----KECLWLQIN-GTKESVIKPSGVKVRHLGLNFQRGA 387 (761)
Q Consensus 314 ~~~~L~~~sll~~~~~~~~~~~~~~~~hd~i~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ 387 (761)
++.+|++++|+...... ++...|+|||++++++.+.+. .+....... +....+.......+|++++.++.+.
T Consensus 459 ~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~ 536 (889)
T KOG4658|consen 459 YIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIE 536 (889)
T ss_pred HHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchh
Confidence 99999999999886543 455689999999999999998 555333332 2233333445678899999999988
Q ss_pred CCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCcccc
Q 042791 388 SFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNL 467 (761)
Q Consensus 388 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l 467 (761)
.++.+ ..+++|++|.+..+.. ....+...+|.+++.|++|||++ +..+..+|..++.+.+||||++
T Consensus 537 ~~~~~-~~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~---------~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 537 HIAGS-SENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSG---------NSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hccCC-CCCCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCC---------CCccCcCChHHhhhhhhhcccc
Confidence 77744 4566899999988852 12445667799999999999998 4455589999999999999999
Q ss_pred CCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCcc--ccccccccCCCCCCCcccCceeecCcc
Q 042791 468 SELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETY--ALKYMPIGISKLTNLRTLDRFVVGGGV 545 (761)
Q Consensus 468 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~--~~~~~p~~l~~l~~L~~L~l~~~~~~~ 545 (761)
+++.++.+|..+.+|+.|.+|++..+.....+|.....|.+|++|.+.... .....-..+..+.+|+.+....... .
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~ 681 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-L 681 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-H
Confidence 999999999999999999999999988777777766779999999986653 1111222234444555544432222 1
Q ss_pred CCCCccCcccccCcc----CCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhh
Q 042791 546 DGSNTCRLESLKNLQ----LRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEA 621 (761)
Q Consensus 546 ~~~~~~~l~~L~~L~----l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 621 (761)
....+..+.+|..+. +.++.. ......+..+.+|+.|.+......+..... ........
T Consensus 682 ~~e~l~~~~~L~~~~~~l~~~~~~~-----------~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~--~~~~~~~~---- 744 (889)
T KOG4658|consen 682 LLEDLLGMTRLRSLLQSLSIEGCSK-----------RTLISSLGSLGNLEELSILDCGISEIVIEW--EESLIVLL---- 744 (889)
T ss_pred hHhhhhhhHHHHHHhHhhhhccccc-----------ceeecccccccCcceEEEEcCCCchhhccc--ccccchhh----
Confidence 111223333333222 111111 111224455667777777655432110000 00000000
Q ss_pred CCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCC
Q 042791 622 LQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLP 666 (761)
Q Consensus 622 l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~ 666 (761)
.++++..+.+.+|.....+.|....++|+.|.+..|....+..
T Consensus 745 --~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 745 --CFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred --hHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 1224444555555555557777788999999999998776543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2e-60 Score=560.97 Aligned_cols=679 Identities=20% Similarity=0.271 Sum_probs=477.3
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEec---CCC-
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS---NTF- 80 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~---~~~- 80 (761)
++..+.+++|||+++++++..++... .++.++|+||||||+||||||+++++ ++...|++.+|+... ...
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~ 251 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSME 251 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchh
Confidence 34556778999999999999988644 34689999999999999999999998 788899888887521 100
Q ss_pred ----------C-HHHHHHHHHHHhcCCCC-CCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCc
Q 042791 81 ----------D-QIRIAKAIIEGLGESAS-GLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGS 148 (761)
Q Consensus 81 ----------~-~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~ 148 (761)
. ...+...++..+..... .... ...+++.+.++|+|||+||||+ ...++.+.....+.++|+
T Consensus 252 ~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~Gs 325 (1153)
T PLN03210 252 IYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGS 325 (1153)
T ss_pred hcccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCc
Confidence 0 11233444444332211 1111 2456777899999999999975 456777777666778899
Q ss_pred EEEEEecchhhhhhcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHHhhCCC
Q 042791 149 KILVTTRNESVARMMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSKS 228 (761)
Q Consensus 149 ~iiiTtr~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~ 228 (761)
+||||||++.++...+....|+++.+++++|+++|+++||+...+ .....+++++|+++|+|+|||++++|+.|+++
T Consensus 326 rIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~--~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k- 402 (1153)
T PLN03210 326 RIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP--PDGFMELASEVALRAGNLPLGLNVLGSYLRGR- 402 (1153)
T ss_pred EEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-
Confidence 999999999998877777899999999999999999999976433 24577889999999999999999999999987
Q ss_pred CHHHHHHHHhhhhhcccccccccccchhcccCCCCCCcchhHHhhhhcCCCCCcccCHHHHHHHHHHcCCcccCCcchHH
Q 042791 229 TVKEWQRILESEMWKVQEIGQDLLAPLLLSYNDLPSNSMVKQCFSYCTVFPKDCIMNKEKLIDLWMAQGYLNADEDEEME 308 (761)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~ 308 (761)
+.++|..+++..... .+.++..+|+.||+.|+.. ..|.||+++|+|+.+..+ + .+..|.+.+.+..
T Consensus 403 ~~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~-~~k~~Fl~ia~ff~~~~~--~-~v~~~l~~~~~~~------- 468 (1153)
T PLN03210 403 DKEDWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNK-KDKAIFRHIACLFNGEKV--N-DIKLLLANSDLDV------- 468 (1153)
T ss_pred CHHHHHHHHHHHHhC---ccHHHHHHHHHhhhccCcc-chhhhhheehhhcCCCCH--H-HHHHHHHhcCCCc-------
Confidence 589999999876543 2456888999999999862 489999999999887543 2 3444555543321
Q ss_pred HHHHHHHHHHHhcCCccccccCCCCCeeEEEEchHHHHHHHHHhccce--------EEEeeCCccc-ccccCCCCceEEE
Q 042791 309 TIGEEYFNILATRSFFQEFEKNDDDNIRSCKMHDIVHDFAQFVSSKEC--------LWLQINGTKE-SVIKPSGVKVRHL 379 (761)
Q Consensus 309 ~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~hd~i~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~l 379 (761)
...++.|++++|++... ..++|||+++++++.++..+. +|... +... ........+++.+
T Consensus 469 ---~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~-di~~vl~~~~g~~~v~~i 537 (1153)
T PLN03210 469 ---NIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAK-DICDVLEDNTGTKKVLGI 537 (1153)
T ss_pred ---hhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHH-HHHHHHHhCcccceeeEE
Confidence 22388899999997632 148999999999999876542 22110 0000 0112234567777
Q ss_pred EEeecCCCCC---cccccCCCceeEEEEcccCCCC-CCCchhhHHHHhccC-CcceEEeeccccccCCcccccccccccc
Q 042791 380 GLNFQRGASF---PMSFFEFDRLRSLLIYDRSYSN-GSLNGSILQELFSKL-ACLRALVISQFYISGSHHEANRIKEIPE 454 (761)
Q Consensus 380 ~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~l~~lp~ 454 (761)
.+....+..+ +.+|..|++|+.|.+..+.... ......++.. +..+ .+|+.|++.++ .++.+|.
T Consensus 538 ~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~----------~l~~lP~ 606 (1153)
T PLN03210 538 TLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKY----------PLRCMPS 606 (1153)
T ss_pred EeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCC----------CCCCCCC
Confidence 7765554432 3468899999999997654321 1112233444 3343 56999999854 4456787
Q ss_pred chhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCc
Q 042791 455 NVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLR 534 (761)
Q Consensus 455 ~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 534 (761)
.+ .+.+|+.|++++|.+..+|..+..+++|+.|+|++|..++.+|. +..+++|++|++++|.....+|..++.+++|+
T Consensus 607 ~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~ 684 (1153)
T PLN03210 607 NF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLE 684 (1153)
T ss_pred cC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCC
Confidence 76 46889999999988888888888889999999998877788875 78888999999999888888888888889999
Q ss_pred ccCceeec-CccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCC-------
Q 042791 535 TLDRFVVG-GGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGE------- 606 (761)
Q Consensus 535 ~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~------- 606 (761)
.|+++++. ....|..+ .+++|+.|++++|..+..++.+ ..+|+.|+++.+.+......
T Consensus 685 ~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~-------------~~nL~~L~L~~n~i~~lP~~~~l~~L~ 750 (1153)
T PLN03210 685 DLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI-------------STNISWLDLDETAIEEFPSNLRLENLD 750 (1153)
T ss_pred EEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc-------------cCCcCeeecCCCccccccccccccccc
Confidence 99888764 44444433 6778888888887665544321 12233333333221110000
Q ss_pred cCcccchhHHHHH--------hhCCCCCCCceEEEEeeC-CCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCC-cceE
Q 042791 607 EGRRKNEKDKQLL--------EALQPPLNVEELWIIFYG-GNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLP-LEKL 676 (761)
Q Consensus 607 ~~~~~~~~~~~~~--------~~l~~~~~L~~L~l~~~~-~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-l~~l 676 (761)
...........+. .....+++|+.|.+++|. ...+|.++.++++|+.|++++|..++.+|....++ ++.+
T Consensus 751 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L 830 (1153)
T PLN03210 751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESL 830 (1153)
T ss_pred cccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEE
Confidence 0000000000000 011234689999999885 45679999999999999999999888887655555 6666
Q ss_pred EeccCcCceEeCccccCCCcccccCCccceeeccccccccc---CCCCCccceEeeecCCCCcCCCcccCCCCCccEEEE
Q 042791 677 VIDDLKSVKSVGNEFLGIEENIIAFPKLKYLKIWATEELEE---TTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRI 753 (761)
Q Consensus 677 ~l~~l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l 753 (761)
.+.+|..+. .+|. ..++|++|++++|..... +..+++|+.|++++|+.++.+|..+..+++|+.+++
T Consensus 831 ~Ls~c~~L~-------~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l 900 (1153)
T PLN03210 831 DLSGCSRLR-------TFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF 900 (1153)
T ss_pred ECCCCCccc-------cccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeec
Confidence 666554432 2222 236788888887765432 456788888888888888888877778888888888
Q ss_pred ecCCCCC
Q 042791 754 WGCPILE 760 (761)
Q Consensus 754 ~~c~~l~ 760 (761)
++|+.|+
T Consensus 901 ~~C~~L~ 907 (1153)
T PLN03210 901 SDCGALT 907 (1153)
T ss_pred CCCcccc
Confidence 8888775
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.5e-38 Score=320.89 Aligned_cols=278 Identities=39% Similarity=0.643 Sum_probs=221.0
Q ss_pred ccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcC
Q 042791 16 RVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGE 95 (761)
Q Consensus 16 r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 95 (761)
|+.++++|.++|.... ++.++|+|+|+||+||||||.+++++...+..|+.++|+.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998643 468999999999999999999999965588999999999999998999999999999987
Q ss_pred CCC---CCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchhhhhhcCC-CCeeec
Q 042791 96 SAS---GLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVARMMGS-TDSISI 171 (761)
Q Consensus 96 ~~~---~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~~~~~-~~~~~l 171 (761)
... ...+.......+++.+.++++|+||||||+. ..|+.+...++....+++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 4466777899999999999999999999763 4666666666666678999999999988776544 678999
Q ss_pred CCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHHhhCCCCHHHHHHHHhhhhhcccc---cc
Q 042791 172 KQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKVQE---IG 248 (761)
Q Consensus 172 ~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~~~~~~~~---~~ 248 (761)
++|+.+||+++|.+.++... ........+.+++|++.|+|+|+|+.++|++|+.+.+...|..+++.......+ ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987654 112244567789999999999999999999997665678899888765544432 34
Q ss_pred cccccchhcccCCCCCCcchhHHhhhhcCCCCCcccCHHHHHHHHHHcCCcccC
Q 042791 249 QDLLAPLLLSYNDLPSNSMVKQCFSYCTVFPKDCIMNKEKLIDLWMAQGYLNAD 302 (761)
Q Consensus 249 ~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~g~~~~~ 302 (761)
..+..++..||+.|++ ++|.||.++++||+++.+++..++.+|+++|++...
T Consensus 234 ~~~~~~l~~s~~~L~~--~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPD--ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHT--CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCc--cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 6688889999999998 999999999999999999999999999999998643
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=2.1e-26 Score=273.63 Aligned_cols=186 Identities=22% Similarity=0.330 Sum_probs=118.0
Q ss_pred ceEEEEEeecCCC-CCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcc---------
Q 042791 375 KVRHLGLNFQRGA-SFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHH--------- 444 (761)
Q Consensus 375 ~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------- 444 (761)
+++.++++.+.+. .++..+..+++|+.|++++|.+ .+.++..++..+++|++|+|++|.+.+..+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~-----~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~ 144 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL-----SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLET 144 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc-----CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCE
Confidence 5666666665543 3445566677777777666653 234455555566666666666666543110
Q ss_pred ---cccccc-ccccchhcccccCccccCCcCCc-cCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccc
Q 042791 445 ---EANRIK-EIPENVGKLIHLKYLNLSELGIE-RLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYA 519 (761)
Q Consensus 445 ---~~~~l~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 519 (761)
.++.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..++.+++|++|++++|..
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 011221 45666777777777777777755 6677777777777777777776666777777777777777777766
Q ss_pred cccccccCCCCCCCcccCceeecCc-cCCCCccCcccccCccCCceE
Q 042791 520 LKYMPIGISKLTNLRTLDRFVVGGG-VDGSNTCRLESLKNLQLRGKC 565 (761)
Q Consensus 520 ~~~~p~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~ 565 (761)
...+|..++.+++|+.|++++|... ..+..+..+++|+.|+++++.
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence 6667777777777777777766533 444556666777777766543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=4.4e-26 Score=270.92 Aligned_cols=355 Identities=20% Similarity=0.178 Sum_probs=186.2
Q ss_pred ceEEEEEeecCCC-CCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccc
Q 042791 375 KVRHLGLNFQRGA-SFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIP 453 (761)
Q Consensus 375 ~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp 453 (761)
+++.|+++.+.+. .+|..+..+++|+.|++.+|.+. +.++. .+.++++|++|++++|.+.+ .+|
T Consensus 189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~p~-~l~~l~~L~~L~L~~n~l~~---------~~p 253 (968)
T PLN00113 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS-----GEIPY-EIGGLTSLNHLDLVYNNLTG---------PIP 253 (968)
T ss_pred CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC-----CcCCh-hHhcCCCCCEEECcCceecc---------ccC
Confidence 4444555444433 33444555555555555544431 11222 13445555555555444433 344
Q ss_pred cchhcccccCccccCCcCCc-cCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCC
Q 042791 454 ENVGKLIHLKYLNLSELGIE-RLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTN 532 (761)
Q Consensus 454 ~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 532 (761)
..++.+++|++|++++|.+. .+|..+.++++|+.|++++|.....+|..+..+++|++|++++|.....+|..+..+++
T Consensus 254 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 333 (968)
T PLN00113 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333 (968)
T ss_pred hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCC
Confidence 44445555555555555443 34444555555555555554444444444445555555555555444444444444555
Q ss_pred CcccCceeecCc-cCCCCccCcccccCccCCceEEEcCCCC-CCChhHH-------------hhccccccCCCCcEEEEe
Q 042791 533 LRTLDRFVVGGG-VDGSNTCRLESLKNLQLRGKCSIEGLSN-VSHVDEA-------------ERLQLYNKKNLLRLHLVF 597 (761)
Q Consensus 533 L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~l-------------~~~~l~~~~~L~~L~l~~ 597 (761)
|+.|++.+|... ..+..+..+.+|+.|+++++......+. +...+.+ ....+..+++|+.|+++.
T Consensus 334 L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~ 413 (968)
T PLN00113 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413 (968)
T ss_pred CCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC
Confidence 555554444422 2233333444444444443322111100 0000000 001234456666666665
Q ss_pred ecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCC-CCCchhhhhcCCcEEEeecCCCCCCCCCCCCCC-cce
Q 042791 598 GRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGN-IFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLP-LEK 675 (761)
Q Consensus 598 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-l~~ 675 (761)
|.+... .+..+..+++|+.|++++|... .+|.++..+++|+.|++++|.....+|..-..+ ++.
T Consensus 414 n~l~~~--------------~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~ 479 (968)
T PLN00113 414 NSFSGE--------------LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLEN 479 (968)
T ss_pred CEeeeE--------------CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceE
Confidence 553211 1122333455555555555443 223344455555555555554433333211111 222
Q ss_pred E----------------EeccCcCceEeCccccC-CCcccccCCccceeeccccccccc----CCCCCccceEeeecCCC
Q 042791 676 L----------------VIDDLKSVKSVGNEFLG-IEENIIAFPKLKYLKIWATEELEE----TTDIPRLSSLTIWYCPK 734 (761)
Q Consensus 676 l----------------~l~~l~~L~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~ 734 (761)
+ .+.+++.|++++|.+.+ +|..+.++++|++|++++|..... +..+++|+.|++++|+.
T Consensus 480 L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred EECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 2 34456778888888886 777788899999999999877654 55788999999999998
Q ss_pred CcCCCcccCCCCCccEEEEecCCC
Q 042791 735 LKVLPDYLLQTTALQELRIWGCPI 758 (761)
Q Consensus 735 l~~l~~~l~~l~~L~~L~l~~c~~ 758 (761)
.+.+|..+.++++|+.|++++|+.
T Consensus 560 ~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 560 SGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred cccCChhHhcCcccCEEeccCCcc
Confidence 888999999999999999999975
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=8.1e-27 Score=234.65 Aligned_cols=342 Identities=20% Similarity=0.204 Sum_probs=196.2
Q ss_pred CceEEEEEeecCCC--CCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccc
Q 042791 374 VKVRHLGLNFQRGA--SFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKE 451 (761)
Q Consensus 374 ~~~~~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 451 (761)
.-+|.++++.++.+ .+|..+..|++++.|.|....+ ..+|.+ +..+.+|+.|.+++|.+. +
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L------~~vPeE-L~~lqkLEHLs~~HN~L~----------~ 69 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL------EQVPEE-LSRLQKLEHLSMAHNQLI----------S 69 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh------hhChHH-HHHHhhhhhhhhhhhhhH----------h
Confidence 34566666666543 6777777777777777766553 344444 567777777777755543 3
Q ss_pred cccchhcccccCccccCCcCCc--cCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCcccccccccc-CC
Q 042791 452 IPENVGKLIHLKYLNLSELGIE--RLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIG-IS 528 (761)
Q Consensus 452 lp~~~~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-l~ 528 (761)
+-..+..++.||.+.++.|++. .+|..+-.+..|..||||.|+ +.+.|..+.+.+++-.|+|++|+ +..+|.. +-
T Consensus 70 vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfi 147 (1255)
T KOG0444|consen 70 VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFI 147 (1255)
T ss_pred hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHH
Confidence 3344555666666666666654 566666666666666666655 55666666666666666666663 3444543 34
Q ss_pred CCCCCcccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcC
Q 042791 529 KLTNLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEG 608 (761)
Q Consensus 529 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~ 608 (761)
+++-|-.|++++|....+|+.+.++..|++|.++++.- .....-.+..+.+|..|.++...-
T Consensus 148 nLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL----------~hfQLrQLPsmtsL~vLhms~TqR-------- 209 (1255)
T KOG0444|consen 148 NLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL----------NHFQLRQLPSMTSLSVLHMSNTQR-------- 209 (1255)
T ss_pred hhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChh----------hHHHHhcCccchhhhhhhcccccc--------
Confidence 55566666666666666666666666666666664211 111111122233333333332220
Q ss_pred cccchhHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCC-----------------CCCCC
Q 042791 609 RRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLP-----------------PLGKL 671 (761)
Q Consensus 609 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-----------------~~~~l 671 (761)
....++..+..+.+|..++++.|....+|+.+.++++|+.|+|++|.... +. .+..+
T Consensus 210 -----Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~L 283 (1255)
T KOG0444|consen 210 -----TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVL 283 (1255)
T ss_pred -----hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccc
Confidence 11222333334445555555555555555555555666666665553110 00 02233
Q ss_pred CcceEEeccCcCceEeCcccc--CCCcccccCCccceeeccccccccc---CCCCCccceEeeecCCCCcCCCcccCCCC
Q 042791 672 PLEKLVIDDLKSVKSVGNEFL--GIEENIIAFPKLKYLKIWATEELEE---TTDIPRLSSLTIWYCPKLKVLPDYLLQTT 746 (761)
Q Consensus 672 pl~~l~l~~l~~L~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~---~~~l~~L~~L~l~~~~~l~~l~~~l~~l~ 746 (761)
|-....++.|+.|....|.++ ++|+.++.+.+|+.+..++|..--. +..|+.|+.|.++.|+ +-++|..+.-++
T Consensus 284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~ 362 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLP 362 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcC
Confidence 323333444555555555433 3666666666666666666544322 5568889999999885 567899988899
Q ss_pred CccEEEEecCCCC
Q 042791 747 ALQELRIWGCPIL 759 (761)
Q Consensus 747 ~L~~L~l~~c~~l 759 (761)
.|..||+.+||+|
T Consensus 363 ~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 363 DLKVLDLRENPNL 375 (1255)
T ss_pred CcceeeccCCcCc
Confidence 9999999999987
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=2.1e-26 Score=231.73 Aligned_cols=321 Identities=22% Similarity=0.251 Sum_probs=262.1
Q ss_pred CCceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEI 452 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 452 (761)
..++.||+++++....+-..+.+++.||++.+..|.+.+.+.+. + +-.+..|.+||||+ +.+++.
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~----d-iF~l~dLt~lDLSh----------NqL~Ev 118 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPT----D-IFRLKDLTILDLSH----------NQLREV 118 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCc----h-hcccccceeeecch----------hhhhhc
Confidence 45788999999998888888999999999999999988766544 4 34789999999995 455689
Q ss_pred ccchhcccccCccccCCcCCccCchh-hhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCC
Q 042791 453 PENVGKLIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLT 531 (761)
Q Consensus 453 p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 531 (761)
|..+..-+++-.|+||+|+|..+|.. +.++..|-+||||+|. ++.+|+.+..+.+|++|.|++|+....--..+..++
T Consensus 119 P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt 197 (1255)
T KOG0444|consen 119 PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT 197 (1255)
T ss_pred chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch
Confidence 99999999999999999999999954 6899999999999988 999999999999999999999987655445577889
Q ss_pred CCcccCceeec--CccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCc
Q 042791 532 NLRTLDRFVVG--GGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGR 609 (761)
Q Consensus 532 ~L~~L~l~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~ 609 (761)
+|+.|.+++++ ....|..+.++.+|..++++ ++.+...+. ++.++.+|+.|+++.|.+......
T Consensus 198 sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~vPe----------cly~l~~LrrLNLS~N~iteL~~~--- 263 (1255)
T KOG0444|consen 198 SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS-ENNLPIVPE----------CLYKLRNLRRLNLSGNKITELNMT--- 263 (1255)
T ss_pred hhhhhhcccccchhhcCCCchhhhhhhhhcccc-ccCCCcchH----------HHhhhhhhheeccCcCceeeeecc---
Confidence 99999998876 55667788899999999998 444433222 466778899999998875432111
Q ss_pred ccchhHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCc
Q 042791 610 RKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGN 689 (761)
Q Consensus 610 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~ 689 (761)
.....+|+.|+++.|..+.+|..++++++|+.|.+.+|+. ....+|--...+.+|..+...+|
T Consensus 264 ------------~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL-----~FeGiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 264 ------------EGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL-----TFEGIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred ------------HHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc-----cccCCccchhhhhhhHHHHhhcc
Confidence 1123578999999999999999999999999999988863 23455644556677888888889
Q ss_pred cccCCCcccccCCccceeeccccccccc---CCCCCccceEeeecCCCCcCCCc
Q 042791 690 EFLGIEENIIAFPKLKYLKIWATEELEE---TTDIPRLSSLTIWYCPKLKVLPD 740 (761)
Q Consensus 690 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~l~~L~~L~l~~~~~l~~l~~ 740 (761)
.+.-+|..+..|++|+.|.|++|+..+. +--+|.|+.|+++.|+++..-|.
T Consensus 327 ~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 327 KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 9988999999999999999999988765 44689999999999998865543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=4.1e-25 Score=221.01 Aligned_cols=337 Identities=19% Similarity=0.185 Sum_probs=194.0
Q ss_pred ceEEEEEeecCCCCCc-ccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccc
Q 042791 375 KVRHLGLNFQRGASFP-MSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIP 453 (761)
Q Consensus 375 ~~~~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp 453 (761)
..+.|+++.|.+..+. ..|.++++|+.+++..|.+ ..+| .+.....+|+.|+|.+|.+.. --.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L------t~IP-~f~~~sghl~~L~L~~N~I~s---------v~s 142 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL------TRIP-RFGHESGHLEKLDLRHNLISS---------VTS 142 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchh------hhcc-cccccccceeEEeeecccccc---------ccH
Confidence 4455666666555443 3455666666666655553 1222 212333446666666554432 112
Q ss_pred cchhcccccCccccCCcCCccCch-hhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCC
Q 042791 454 ENVGKLIHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTN 532 (761)
Q Consensus 454 ~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 532 (761)
+++..++-|+.|||+.|.|+++|. +|..-.++++|+|++|.+...--..|..+.+|..|.|+.|.+..--+..+..+++
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence 334455556666666666665552 3444456666666666543333334555556666666666433322234555666
Q ss_pred CcccCceeecCccC-CCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCccc
Q 042791 533 LRTLDRFVVGGGVD-GSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRK 611 (761)
Q Consensus 533 L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 611 (761)
|+.|++..|.+... ...+.++++|+.|++..+ . ...+.-..+..|.++++|+++.|++..
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN-~---------I~kL~DG~Fy~l~kme~l~L~~N~l~~--------- 283 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN-D---------ISKLDDGAFYGLEKMEHLNLETNRLQA--------- 283 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhc-C---------cccccCcceeeecccceeecccchhhh---------
Confidence 66666666654333 333455666666655431 1 122222345567777778877776422
Q ss_pred chhHHHHHhhCCCCCCCceEEEEeeCCCCC-CchhhhhcCCcEEEeecCCCCCCCCCCCCCC-cceEEeccCcCceEeCc
Q 042791 612 NEKDKQLLEALQPPLNVEELWIIFYGGNIF-PKWLTLLTNLRNLTLASCVNCEHLPPLGKLP-LEKLVIDDLKSVKSVGN 689 (761)
Q Consensus 612 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-l~~l~l~~l~~L~~~~~ 689 (761)
.--..+.++..|+.|++++|.+..+ ++.+..+++|+.|+|++|. +..++ -.+-.|+.|+.|+++.|
T Consensus 284 -----vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-------i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 284 -----VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-------ITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred -----hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-------cccCChhHHHHHHHhhhhccccc
Confidence 1123445677788888888877655 5667778888888888774 33333 22223456777778888
Q ss_pred cccCCC-cccccCCccceeeccccccccc-------CCCCCccceEeeecCCCCcCCCcc-cCCCCCccEEEEecCCCC
Q 042791 690 EFLGIE-ENIIAFPKLKYLKIWATEELEE-------TTDIPRLSSLTIWYCPKLKVLPDY-LLQTTALQELRIWGCPIL 759 (761)
Q Consensus 690 ~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-------~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~c~~l 759 (761)
++..+. ..+.++++|+.|+|++|.+--. ..+||+|++|.+.||+ ++.||.. +..++.|++||+.+|+..
T Consensus 352 si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 352 SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCcce
Confidence 777643 3456778888888887755322 3458888888888884 6666653 567888888888887653
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=1.1e-25 Score=215.19 Aligned_cols=339 Identities=21% Similarity=0.241 Sum_probs=259.3
Q ss_pred CCceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEI 452 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 452 (761)
...+..+.++++....+|+++..+..++.|+.+.|.+ ..+|+. ..++..|+.|+.+.|. +.++
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~l------s~lp~~-i~s~~~l~~l~~s~n~----------~~el 129 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKL------SELPEQ-IGSLISLVKLDCSSNE----------LKEL 129 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchH------hhccHH-Hhhhhhhhhhhccccc----------eeec
Confidence 3456788889999999999999999999999988875 344444 6788899999999544 4578
Q ss_pred ccchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCC
Q 042791 453 PENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTN 532 (761)
Q Consensus 453 p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 532 (761)
|++++.+..|..|+..+|+++.+|..+.++.+|..|++.+|+ ++.+|+..-+|+.|++||+..| .++.+|+.++.+.+
T Consensus 130 ~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~ 207 (565)
T KOG0472|consen 130 PDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLES 207 (565)
T ss_pred CchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhh
Confidence 999999999999999999999999999999999999999988 6677776767999999999888 78999999999999
Q ss_pred CcccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccc
Q 042791 533 LRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKN 612 (761)
Q Consensus 533 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 612 (761)
|..|++..|...+.| .+.++..|..|++.. ..+..+....+.++.++..|++..|+++
T Consensus 208 L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~----------N~i~~lpae~~~~L~~l~vLDLRdNklk----------- 265 (565)
T KOG0472|consen 208 LELLYLRRNKIRFLP-EFPGCSLLKELHVGE----------NQIEMLPAEHLKHLNSLLVLDLRDNKLK----------- 265 (565)
T ss_pred hHHHHhhhcccccCC-CCCccHHHHHHHhcc----------cHHHhhHHHHhcccccceeeeccccccc-----------
Confidence 999999999999988 688888899888773 2333444445667788888998888753
Q ss_pred hhHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCC---------------------------C-
Q 042791 613 EKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCE---------------------------H- 664 (761)
Q Consensus 613 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~---------------------------~- 664 (761)
..+..+-.+.+|+.|+++++.++.+|..++++ +|+.|.+.||..-+ .
T Consensus 266 ----e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s 340 (565)
T KOG0472|consen 266 ----EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS 340 (565)
T ss_pred ----cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence 23333444567889999999999999989888 88988888885100 0
Q ss_pred --------------CCCC--------------------------------------------------------------
Q 042791 665 --------------LPPL-------------------------------------------------------------- 668 (761)
Q Consensus 665 --------------~~~~-------------------------------------------------------------- 668 (761)
+|..
T Consensus 341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls 420 (565)
T KOG0472|consen 341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS 420 (565)
T ss_pred cccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh
Confidence 0000
Q ss_pred ----CCCCcceEEeccCcCceEeCccccCCCcccccCCccceeeccccccccc---------------------------
Q 042791 669 ----GKLPLEKLVIDDLKSVKSVGNEFLGIEENIIAFPKLKYLKIWATEELEE--------------------------- 717 (761)
Q Consensus 669 ----~~lpl~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------------------------- 717 (761)
+-.|.....+..+..|++++|-+..+|...+.+-.|+.|+++.|+.-..
T Consensus 421 nn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~ 500 (565)
T KOG0472|consen 421 NNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSG 500 (565)
T ss_pred cCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHH
Confidence 0001111122234556666666666666666666677777766533221
Q ss_pred CCCCCccceEeeecCCCCcCCCcccCCCCCccEEEEecCCC
Q 042791 718 TTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWGCPI 758 (761)
Q Consensus 718 ~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~ 758 (761)
...|.+|..|++.+|. +..+|+.++++++|++|++++||.
T Consensus 501 l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCcc
Confidence 3457789999999884 678999999999999999999985
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=8.6e-24 Score=211.62 Aligned_cols=336 Identities=20% Similarity=0.205 Sum_probs=260.8
Q ss_pred CCCCceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccc
Q 042791 371 PSGVKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIK 450 (761)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 450 (761)
....+++.+.+..|....+|.......+|+.|+|.+|.+. .+-.+-+..++.||+||||.|.++.
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~------sv~se~L~~l~alrslDLSrN~is~--------- 163 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS------SVTSEELSALPALRSLDLSRNLISE--------- 163 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccc------cccHHHHHhHhhhhhhhhhhchhhc---------
Confidence 4578899999999999999977777888999999999863 3333447788999999999877663
Q ss_pred cccc-chhcccccCccccCCcCCccCc-hhhhccCCCcEEecCCccCcccccc-cccccccccEeecCCccccccccccC
Q 042791 451 EIPE-NVGKLIHLKYLNLSELGIERLP-ETLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRTLLNGETYALKYMPIGI 527 (761)
Q Consensus 451 ~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l 527 (761)
+|. ++..-.++++|+|++|.|+.+. ..|.++.+|.+|.|++|. +..+|. .|.+|++|+.|+|..|.+...--..+
T Consensus 164 -i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltF 241 (873)
T KOG4194|consen 164 -IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTF 241 (873)
T ss_pred -ccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhh
Confidence 432 3444578999999999999775 468889999999999998 666664 56779999999999996543334458
Q ss_pred CCCCCCcccCceeecCccCCC-CccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCC
Q 042791 528 SKLTNLRTLDRFVVGGGVDGS-NTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGE 606 (761)
Q Consensus 528 ~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~ 606 (761)
+.+++|+.|.+..|.+..+.. .+..+.+++.|++.. +.+..+...++.++..|+.|++++|.+..
T Consensus 242 qgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~----------N~l~~vn~g~lfgLt~L~~L~lS~NaI~r---- 307 (873)
T KOG4194|consen 242 QGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET----------NRLQAVNEGWLFGLTSLEQLDLSYNAIQR---- 307 (873)
T ss_pred cCchhhhhhhhhhcCcccccCcceeeecccceeeccc----------chhhhhhcccccccchhhhhccchhhhhe----
Confidence 899999999999998766654 356788999998874 34455666788899999999999998432
Q ss_pred cCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCCC-chhhhhcCCcEEEeecCCCCCCCCCCCCCC-cceEEeccCcCc
Q 042791 607 EGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFP-KWLTLLTNLRNLTLASCVNCEHLPPLGKLP-LEKLVIDDLKSV 684 (761)
Q Consensus 607 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-l~~l~l~~l~~L 684 (761)
-....++.+++|+.|++++|.++.++ ..+..+..|++|.|+.|. +..+. -.+..+++|+.|
T Consensus 308 ----------ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-------i~~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 308 ----------IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-------IDHLAEGAFVGLSSLHKL 370 (873)
T ss_pred ----------eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-------hHHHHhhHHHHhhhhhhh
Confidence 23445667899999999999998885 467789999999999995 33333 334456788889
Q ss_pred eEeCccccC-CCc---ccccCCccceeeccccccccc----CCCCCccceEeeecCCCCcCCCcccCCCCCccEEEEec
Q 042791 685 KSVGNEFLG-IEE---NIIAFPKLKYLKIWATEELEE----TTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWG 755 (761)
Q Consensus 685 ~~~~~~~~~-~~~---~~~~~~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~ 755 (761)
++..|.++. +.+ .+.++++|+.|.+.+|++-.. +.++++|++|+|.+|.+...-|..+..+ .|++|.+..
T Consensus 371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 998888776 322 356899999999999876543 6689999999999998665555556665 777776543
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=5.5e-21 Score=226.82 Aligned_cols=273 Identities=23% Similarity=0.242 Sum_probs=156.4
Q ss_pred hhcccccCccccCCcC-CccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCc
Q 042791 456 VGKLIHLKYLNLSELG-IERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLR 534 (761)
Q Consensus 456 ~~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 534 (761)
++.+++|++|++++|. +..+|..+.++++|+.|++++|..++.+|..+ ++++|+.|++++|..+..+|.. ..+|+
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~ 728 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNIS 728 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcC
Confidence 3444445555554443 33444444444555555555444444444433 4444555555444444443321 23344
Q ss_pred ccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchh
Q 042791 535 TLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEK 614 (761)
Q Consensus 535 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 614 (761)
.|++.++.....|..+ .+++|..|.+.++........+..+. ......+++|+.|.++.+. .
T Consensus 729 ~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~---~~~~~~~~sL~~L~Ls~n~--------------~ 790 (1153)
T PLN03210 729 WLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLT---PLMTMLSPSLTRLFLSDIP--------------S 790 (1153)
T ss_pred eeecCCCccccccccc-cccccccccccccchhhccccccccc---hhhhhccccchheeCCCCC--------------C
Confidence 4444444433333222 23444444443221111000000000 0111124567777776553 1
Q ss_pred HHHHHhhCCCCCCCceEEEEeeC-CCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccC
Q 042791 615 DKQLLEALQPPLNVEELWIIFYG-GNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLG 693 (761)
Q Consensus 615 ~~~~~~~l~~~~~L~~L~l~~~~-~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~ 693 (761)
...++..+..+++|+.|++++|. ...+|..+ ++++|+.|++++|..+..+|.. ..+++.|++.+|.++.
T Consensus 791 l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---------~~nL~~L~Ls~n~i~~ 860 (1153)
T PLN03210 791 LVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---------STNISDLNLSRTGIEE 860 (1153)
T ss_pred ccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---------ccccCEeECCCCCCcc
Confidence 12234456678899999999875 56677766 7899999999999877665532 1367778888899999
Q ss_pred CCcccccCCccceeeccccccccc----CCCCCccceEeeecCCCCcCCCcc-------------cCCCCCccEEEEecC
Q 042791 694 IEENIIAFPKLKYLKIWATEELEE----TTDIPRLSSLTIWYCPKLKVLPDY-------------LLQTTALQELRIWGC 756 (761)
Q Consensus 694 ~~~~~~~~~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~l~~l~~~-------------l~~l~~L~~L~l~~c 756 (761)
+|..+..+++|+.|++++|..+.. ...+++|+.|++++|..+..++.. ...++....+.+.+|
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC 940 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINC 940 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccc
Confidence 998899999999999999987776 456889999999999887644321 012344455667777
Q ss_pred CCCC
Q 042791 757 PILE 760 (761)
Q Consensus 757 ~~l~ 760 (761)
.+|+
T Consensus 941 ~~L~ 944 (1153)
T PLN03210 941 FNLD 944 (1153)
T ss_pred cCCC
Confidence 6664
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=6.6e-23 Score=196.39 Aligned_cols=256 Identities=25% Similarity=0.264 Sum_probs=203.5
Q ss_pred CceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccc
Q 042791 374 VKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIP 453 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp 453 (761)
.....+.++++....+.+.+.++.-|.+|++++|.+ ..+|+. ...+..++.|+.++|++ ..+|
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l------~~lp~a-ig~l~~l~~l~vs~n~l----------s~lp 107 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL------SQLPAA-IGELEALKSLNVSHNKL----------SELP 107 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchh------hhCCHH-HHHHHHHHHhhcccchH----------hhcc
Confidence 345566778888887878889999999999999875 333444 56778888899996554 4799
Q ss_pred cchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCC
Q 042791 454 ENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNL 533 (761)
Q Consensus 454 ~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 533 (761)
..++.+..|+.|+.+.|.+.++|++++.+..|+.|+..+|+ +..+|.++.++.+|..|++.+|.. ..+|+..-.++.|
T Consensus 108 ~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L 185 (565)
T KOG0472|consen 108 EQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRL 185 (565)
T ss_pred HHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999887 778999999999999999999954 5555555569999
Q ss_pred cccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccch
Q 042791 534 RTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNE 613 (761)
Q Consensus 534 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 613 (761)
++|+...|.....|..++.+.+|..|.++. ..+..++. +.+|+.|+++++..|.+
T Consensus 186 ~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPe-----------f~gcs~L~Elh~g~N~i------------- 240 (565)
T KOG0472|consen 186 KHLDCNSNLLETLPPELGGLESLELLYLRR-NKIRFLPE-----------FPGCSLLKELHVGENQI------------- 240 (565)
T ss_pred HhcccchhhhhcCChhhcchhhhHHHHhhh-cccccCCC-----------CCccHHHHHHHhcccHH-------------
Confidence 999999999999999999999999999884 45555544 44677777777766652
Q ss_pred hHHHHH-hhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCC-CCCCCCcceE
Q 042791 614 KDKQLL-EALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLP-PLGKLPLEKL 676 (761)
Q Consensus 614 ~~~~~~-~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~lpl~~l 676 (761)
+.++ +....++.+..|++.++....+|..++.+++|.+|++++|. ++.+| .+|.+.++++
T Consensus 241 --~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnlhL~~L 302 (565)
T KOG0472|consen 241 --EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNLHLKFL 302 (565)
T ss_pred --HhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc-cccCCcccccceeeeh
Confidence 2222 23446788999999999999999999999999999999986 33333 4444444444
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=7.2e-21 Score=201.38 Aligned_cols=126 Identities=25% Similarity=0.290 Sum_probs=81.4
Q ss_pred CCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccCCCcccccCCc
Q 042791 624 PPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLGIEENIIAFPK 703 (761)
Q Consensus 624 ~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~ 703 (761)
.+.+|+.++++.+....+|+|+..|.+|+.|....|.. ..+|++...+.+|+.|....|.+..+|....++++
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-------~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~s 311 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-------VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKS 311 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchhH-------HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccce
Confidence 35689999999999999999999999999999988852 23344444444444444444444444444444444
Q ss_pred cceeecccc-------------------------------------------------ccccc----CCCCCccceEeee
Q 042791 704 LKYLKIWAT-------------------------------------------------EELEE----TTDIPRLSSLTIW 730 (761)
Q Consensus 704 L~~L~l~~~-------------------------------------------------~~~~~----~~~l~~L~~L~l~ 730 (761)
|++|+|..| ..... +.++++|+.|+++
T Consensus 312 L~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 312 LRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS 391 (1081)
T ss_pred eeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence 444444333 32222 3456778888888
Q ss_pred cCCCCcCCCcc-cCCCCCccEEEEecCC
Q 042791 731 YCPKLKVLPDY-LLQTTALQELRIWGCP 757 (761)
Q Consensus 731 ~~~~l~~l~~~-l~~l~~L~~L~l~~c~ 757 (761)
+|+ +.++|.. +.+++.|++|++|||.
T Consensus 392 yNr-L~~fpas~~~kle~LeeL~LSGNk 418 (1081)
T KOG0618|consen 392 YNR-LNSFPASKLRKLEELEELNLSGNK 418 (1081)
T ss_pred ccc-cccCCHHHHhchHHhHHHhcccch
Confidence 875 4555543 5677778888888774
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=5.5e-20 Score=194.77 Aligned_cols=353 Identities=19% Similarity=0.177 Sum_probs=201.6
Q ss_pred CCceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEI 452 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 452 (761)
..++.+|+++.+.+..+|..+..+.+|+.|+++.|.+. ..+ ....++.+|++|.|. ++.+..+
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~------~vp-~s~~~~~~l~~lnL~----------~n~l~~l 106 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR------SVP-SSCSNMRNLQYLNLK----------NNRLQSL 106 (1081)
T ss_pred eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh------hCc-hhhhhhhcchhheec----------cchhhcC
Confidence 34588888888888888888888888888888888752 222 235678888888888 5556678
Q ss_pred ccchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccC-----
Q 042791 453 PENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGI----- 527 (761)
Q Consensus 453 p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l----- 527 (761)
|.++..+.+|++|++++|.+..+|..+..+..++.++.++|..+..++... .+.+++..+.....++.++
T Consensus 107 P~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~i~~l~~ 181 (1081)
T KOG0618|consen 107 PASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLIDIYNLTH 181 (1081)
T ss_pred chhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcchhhhhe
Confidence 888888889999999988888888777777777777777663333332211 3333333333333333333
Q ss_pred --------------CCCCCCcccCceeecCccCCCCccCcccccCccCCceEEEcCCC------------CCCChhHHhh
Q 042791 528 --------------SKLTNLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLS------------NVSHVDEAER 581 (761)
Q Consensus 528 --------------~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------------~~~~~~~l~~ 581 (761)
..+.+|+.+....+...... -..++|+.|....|...+... ..+.+..+.
T Consensus 182 ~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp- 257 (1081)
T KOG0618|consen 182 QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELE---ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP- 257 (1081)
T ss_pred eeecccchhhhhhhhhccchhhhhhhhcccceEE---ecCcchheeeeccCcceeeccccccccceeeecchhhhhcch-
Confidence 33444444433333222111 011222222222211111000 011222222
Q ss_pred ccccccCCCCcEEEEeecccCCCCC--------cCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCCCch---------
Q 042791 582 LQLYNKKNLLRLHLVFGRVVDGEGE--------EGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKW--------- 644 (761)
Q Consensus 582 ~~l~~~~~L~~L~l~~~~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~--------- 644 (761)
-++..|.+|+.++...|.+...... ...........++..+.+...|+.|++..+.+..+|..
T Consensus 258 ~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l 337 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASL 337 (1081)
T ss_pred HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHH
Confidence 3555677777777766654221100 00000111223334444556677777766665554431
Q ss_pred -----------------------------------------hhhhcCCcEEEeecCCCCCCCCCCCCCC-cceEEeccCc
Q 042791 645 -----------------------------------------LTLLTNLRNLTLASCVNCEHLPPLGKLP-LEKLVIDDLK 682 (761)
Q Consensus 645 -----------------------------------------~~~l~~L~~L~l~~~~~~~~~~~~~~lp-l~~l~l~~l~ 682 (761)
+.++++|+.|+|++|. +..+| -..-++..++
T Consensus 338 ~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-------L~~fpas~~~kle~Le 410 (1081)
T KOG0618|consen 338 NTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-------LNSFPASKLRKLEELE 410 (1081)
T ss_pred HHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-------cccCCHHHHhchHHhH
Confidence 1122344444444442 22333 2222344467
Q ss_pred CceEeCccccCCCcccccCCccceeeccccccccc--CCCCCccceEeeecCCCCc-CCCcccCCCCCccEEEEecCCCC
Q 042791 683 SVKSVGNEFLGIEENIIAFPKLKYLKIWATEELEE--TTDIPRLSSLTIWYCPKLK-VLPDYLLQTTALQELRIWGCPIL 759 (761)
Q Consensus 683 ~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~l~~L~~L~l~~~~~l~-~l~~~l~~l~~L~~L~l~~c~~l 759 (761)
.|++++|.++.+|.....++.|+.|...+|..... +..+|.|+.+|++.|+... .+|..+ ..+.|++||++||..+
T Consensus 411 eL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 411 ELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTRL 489 (1081)
T ss_pred HHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCccc
Confidence 77888888888887777888888888877766544 5678999999999887544 333332 2389999999999854
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=6.8e-16 Score=169.65 Aligned_cols=114 Identities=21% Similarity=0.199 Sum_probs=58.5
Q ss_pred CCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccCCCcccccCCccce
Q 042791 627 NVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLGIEENIIAFPKLKY 706 (761)
Q Consensus 627 ~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~L~~ 706 (761)
+|+.|++++|.+..+|.. .++|+.|++++|. +..+|.. ..+|+.|++.+|.++.+|.. .++|+.
T Consensus 343 ~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~l---------~~~L~~LdLs~N~Lt~LP~l---~s~L~~ 406 (788)
T PRK15387 343 GLQELSVSDNQLASLPTL---PSELYKLWAYNNR-LTSLPAL---------PSGLKELIVSGNRLTSLPVL---PSELKE 406 (788)
T ss_pred ccceEecCCCccCCCCCC---Ccccceehhhccc-cccCccc---------ccccceEEecCCcccCCCCc---ccCCCE
Confidence 455555655555555532 2355555555553 2222211 12345555555665555532 245666
Q ss_pred eecccccccccCCCCCccceEeeecCCCCcCCCcccCCCCCccEEEEecCC
Q 042791 707 LKIWATEELEETTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWGCP 757 (761)
Q Consensus 707 L~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 757 (761)
|++++|..........+|+.|++++|. ++.+|..+.++++|+.|++++|+
T Consensus 407 LdLS~N~LssIP~l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 407 LMVSGNRLTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred EEccCCcCCCCCcchhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 666666544322222356666666654 34566666666666666666665
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=9.1e-15 Score=160.86 Aligned_cols=257 Identities=18% Similarity=0.158 Sum_probs=162.2
Q ss_pred EEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccch
Q 042791 377 RHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENV 456 (761)
Q Consensus 377 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~ 456 (761)
..++++.+.+..+|+.+. ++|+.|.+.+|.+.. +| ..+++|++|++++|.++ .+|..
T Consensus 204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~------LP----~lp~~Lk~LdLs~N~Lt----------sLP~l- 260 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS------LP----ALPPELRTLEVSGNQLT----------SLPVL- 260 (788)
T ss_pred cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC------CC----CCCCCCcEEEecCCccC----------cccCc-
Confidence 356777777777887664 478888888877532 22 13578888888866554 45542
Q ss_pred hcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCccc
Q 042791 457 GKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTL 536 (761)
Q Consensus 457 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 536 (761)
.++|+.|++++|.++.+|... .+|+.|++++|. +..+|. .+++|++|++++|.+ ..+|.. ..+|+.|
T Consensus 261 --p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~L-~~Lp~l---p~~L~~L 327 (788)
T PRK15387 261 --PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQL-ASLPAL---PSELCKL 327 (788)
T ss_pred --ccccceeeccCCchhhhhhch---hhcCEEECcCCc-cccccc---cccccceeECCCCcc-ccCCCC---ccccccc
Confidence 357888888888888777533 567788888876 556665 246788888888844 345542 2356677
Q ss_pred CceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchhHH
Q 042791 537 DRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDK 616 (761)
Q Consensus 537 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 616 (761)
++.+|....+|... .+|+.|++++ +.+..++.+ ..+|+.|+++.|.+...
T Consensus 328 ~Ls~N~L~~LP~lp---~~Lq~LdLS~-N~Ls~LP~l-------------p~~L~~L~Ls~N~L~~L------------- 377 (788)
T PRK15387 328 WAYNNQLTSLPTLP---SGLQELSVSD-NQLASLPTL-------------PSELYKLWAYNNRLTSL------------- 377 (788)
T ss_pred ccccCccccccccc---cccceEecCC-CccCCCCCC-------------CcccceehhhccccccC-------------
Confidence 77777665544321 4677777775 334333221 12345555555543210
Q ss_pred HHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccCCCc
Q 042791 617 QLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLGIEE 696 (761)
Q Consensus 617 ~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~~~~ 696 (761)
+. .+.+|+.|++++|.+..+|.. .++|+.|++++|. ++.+|. + ..++..|++.+|.++.+|.
T Consensus 378 --P~---l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP~---l------~~~L~~L~Ls~NqLt~LP~ 439 (788)
T PRK15387 378 --PA---LPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNR-LTSLPM---L------PSGLLSLSVYRNQLTRLPE 439 (788)
T ss_pred --cc---cccccceEEecCCcccCCCCc---ccCCCEEEccCCc-CCCCCc---c------hhhhhhhhhccCcccccCh
Confidence 00 124677888888877776653 3578888888875 233332 1 1345667777788877887
Q ss_pred ccccCCccceeeccccccccc
Q 042791 697 NIIAFPKLKYLKIWATEELEE 717 (761)
Q Consensus 697 ~~~~~~~L~~L~l~~~~~~~~ 717 (761)
.+..+++|+.|+|++|+....
T Consensus 440 sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 440 SLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred HHhhccCCCeEECCCCCCCch
Confidence 777788888888888766543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=3.6e-14 Score=157.41 Aligned_cols=256 Identities=18% Similarity=0.255 Sum_probs=160.1
Q ss_pred ceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccccc
Q 042791 375 KVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPE 454 (761)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~ 454 (761)
+...+.+....+..+|..+. +.|+.|++++|.+. .++..+ +++|+.|++++|.++ .+|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt------sLP~~l---~~nL~~L~Ls~N~Lt----------sLP~ 237 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK------SLPENL---QGNIKTLYANSNQLT----------SIPA 237 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC------cCChhh---ccCCCEEECCCCccc----------cCCh
Confidence 44567777777778886553 57899999988763 233333 258999999966554 5666
Q ss_pred chhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCc
Q 042791 455 NVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLR 534 (761)
Q Consensus 455 ~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 534 (761)
.+. .+|+.|++++|.+..+|..+. .+|+.|++++|+ +..+|..+. ++|+.|++++|.+ ..+|..+. ++|+
T Consensus 238 ~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~lp--~sL~ 307 (754)
T PRK15370 238 TLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSI-RTLPAHLP--SGIT 307 (754)
T ss_pred hhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCcc-ccCcccch--hhHH
Confidence 543 478999999999999988764 589999999876 557887553 5899999999854 45665442 3677
Q ss_pred ccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchh
Q 042791 535 TLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEK 614 (761)
Q Consensus 535 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 614 (761)
.|++++|.....+..+ .++|+.|.+++| .+..++
T Consensus 308 ~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N-~Lt~LP------------------------------------------- 341 (754)
T PRK15370 308 HLNVQSNSLTALPETL--PPGLKTLEAGEN-ALTSLP------------------------------------------- 341 (754)
T ss_pred HHHhcCCccccCCccc--cccceeccccCC-ccccCC-------------------------------------------
Confidence 7777766655444322 134555555532 111110
Q ss_pred HHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccCC
Q 042791 615 DKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLGI 694 (761)
Q Consensus 615 ~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~~ 694 (761)
..+ +++|+.|++++|.+..+|..+ .++|+.|++++|. +..+|. .+| ..++.|++++|.+..+
T Consensus 342 -----~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~-Lt~LP~--~l~------~sL~~LdLs~N~L~~L 403 (754)
T PRK15370 342 -----ASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNA-LTNLPE--NLP------AALQIMQASRNNLVRL 403 (754)
T ss_pred -----hhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCc-CCCCCH--hHH------HHHHHHhhccCCcccC
Confidence 000 245666667666666666544 3577888887774 222221 111 2456666777777666
Q ss_pred Cccc----ccCCccceeecccccccccCCCCCccceE
Q 042791 695 EENI----IAFPKLKYLKIWATEELEETTDIPRLSSL 727 (761)
Q Consensus 695 ~~~~----~~~~~L~~L~l~~~~~~~~~~~l~~L~~L 727 (761)
|..+ +.++++..|++.+|+... ..+++|+.|
T Consensus 404 P~sl~~~~~~~~~l~~L~L~~Npls~--~tl~~L~~L 438 (754)
T PRK15370 404 PESLPHFRGEGPQPTRIIVEYNPFSE--RTIQNMQRL 438 (754)
T ss_pred chhHHHHhhcCCCccEEEeeCCCccH--HHHHHHHHh
Confidence 5433 334777788887776543 344455444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=2.7e-14 Score=158.37 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=53.5
Q ss_pred CCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccCCCcccccCCccc
Q 042791 626 LNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLGIEENIIAFPKLK 705 (761)
Q Consensus 626 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~L~ 705 (761)
++|+.|.+++|..+.+|..+. ++|+.|++++|. ++.+|. .+| ..|+.|++.+|.++.+|..+ .++|+
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~--~lp------~~L~~LdLs~N~Lt~LP~~l--~~sL~ 391 (754)
T PRK15370 325 PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQ-ITVLPE--TLP------PTITTLDVSRNALTNLPENL--PAALQ 391 (754)
T ss_pred ccceeccccCCccccCChhhc--CcccEEECCCCC-CCcCCh--hhc------CCcCEEECCCCcCCCCCHhH--HHHHH
Confidence 456777777777666676553 677888887774 222321 111 24555666666666655433 23566
Q ss_pred eeeccccccccc-------CCCCCccceEeeecCCC
Q 042791 706 YLKIWATEELEE-------TTDIPRLSSLTIWYCPK 734 (761)
Q Consensus 706 ~L~l~~~~~~~~-------~~~l~~L~~L~l~~~~~ 734 (761)
.|++++|..... ...+|++..|++.+|+.
T Consensus 392 ~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 392 IMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 666666654322 11235556666666654
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=7.1e-16 Score=130.85 Aligned_cols=154 Identities=23% Similarity=0.303 Sum_probs=74.2
Q ss_pred ceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccccc
Q 042791 375 KVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPE 454 (761)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~ 454 (761)
.+.++.++++++..+|+.++++.+|+.|++++|.+ .++|.. +++++.|+.|++..|.+. .+|.
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi------e~lp~~-issl~klr~lnvgmnrl~----------~lpr 96 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI------EELPTS-ISSLPKLRILNVGMNRLN----------ILPR 96 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccchh------hhcChh-hhhchhhhheecchhhhh----------cCcc
Confidence 44555555555555555555555555555555443 222222 344555555555433322 3444
Q ss_pred chhcccccCccccCCcCCc--cCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCC
Q 042791 455 NVGKLIHLKYLNLSELGIE--RLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTN 532 (761)
Q Consensus 455 ~~~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 532 (761)
.|+.++-|+.|++++|++. .+|..|-.+..|+.|.|+.|. .+.+|.+++++++|+.|.+..| .+-.+|.+++.+..
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~ 174 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTR 174 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHH
Confidence 5555555555555555444 344444444455555555544 4444545555555555555544 22334444555555
Q ss_pred CcccCceeecCccCC
Q 042791 533 LRTLDRFVVGGGVDG 547 (761)
Q Consensus 533 L~~L~l~~~~~~~~~ 547 (761)
|+.|.+.+|....+|
T Consensus 175 lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 175 LRELHIQGNRLTVLP 189 (264)
T ss_pred HHHHhcccceeeecC
Confidence 555555444444443
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=9.4e-16 Score=130.14 Aligned_cols=156 Identities=22% Similarity=0.340 Sum_probs=137.1
Q ss_pred cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcC
Q 042791 392 SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELG 471 (761)
Q Consensus 392 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~ 471 (761)
.+.++++++.|.+++|.+. .+++. +..+.+|++|+++ ++.++.+|.+++.+++|+.|+++.|.
T Consensus 28 gLf~~s~ITrLtLSHNKl~------~vppn-ia~l~nlevln~~----------nnqie~lp~~issl~klr~lnvgmnr 90 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT------VVPPN-IAELKNLEVLNLS----------NNQIEELPTSISSLPKLRILNVGMNR 90 (264)
T ss_pred cccchhhhhhhhcccCcee------ecCCc-HHHhhhhhhhhcc----------cchhhhcChhhhhchhhhheecchhh
Confidence 6778999999999999862 33444 5678999999999 45556899999999999999999999
Q ss_pred CccCchhhhccCCCcEEecCCccCcc-cccccccccccccEeecCCccccccccccCCCCCCCcccCceeecCccCCCCc
Q 042791 472 IERLPETLCELYNLQKLDIRRCRNLR-ELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSNT 550 (761)
Q Consensus 472 i~~lp~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~ 550 (761)
+..+|..|+.++.|+.|||.+|+..+ .+|..|..|..|+.|.++.| ..+.+|..++.+++|+.|.+..|..-.+|..+
T Consensus 91 l~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~lpkei 169 (264)
T KOG0617|consen 91 LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLSLPKEI 169 (264)
T ss_pred hhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhhCcHHH
Confidence 99999999999999999999988654 58999999999999999998 55788999999999999999999999999999
Q ss_pred cCcccccCccCCceE
Q 042791 551 CRLESLKNLQLRGKC 565 (761)
Q Consensus 551 ~~l~~L~~L~l~~~~ 565 (761)
+.+.+|+.|++.++.
T Consensus 170 g~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 170 GDLTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHHHHhcccce
Confidence 999999999998753
No 21
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.46 E-value=1.5e-11 Score=130.57 Aligned_cols=318 Identities=14% Similarity=0.063 Sum_probs=181.7
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHH
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIR 84 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (761)
.|...++.|+||+++++++...+...-. +..+..++|+|++|+|||++++.++++.......-.++|+++....+...
T Consensus 24 ~~~~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~ 101 (394)
T PRK00411 24 EPDYVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYA 101 (394)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHH
Confidence 3445667899999999999999865422 23456789999999999999999998422222124467788877778888
Q ss_pred HHHHHHHHhcCCC--CCCCcHHHHHHHHHHHhC--CceEEEEEeCCCCCC-ccCchhHHHhhc--CCCCCcE--EEEEec
Q 042791 85 IAKAIIEGLGESA--SGLNEFQSLMSRIQSSIK--GKKNFLVLDDVWDGD-YNKWQPFFRCLK--NGLHGSK--ILVTTR 155 (761)
Q Consensus 85 ~~~~i~~~l~~~~--~~~~~~~~~~~~~~~~l~--~~~~LlvlDd~~~~~-~~~~~~l~~~~~--~~~~~~~--iiiTtr 155 (761)
++..++.++.... ......++....+.+.+. +++.+||||++|... ....+.+...+. ....+++ +|.++.
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~ 181 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISS 181 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEEC
Confidence 9999999987522 122345666666766664 456899999997632 112222322222 1112323 566665
Q ss_pred chhhhhhc-------CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhc----CCCchhHHHHHHHh
Q 042791 156 NESVARMM-------GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKC----KGLPLAAKVIGNLL 224 (761)
Q Consensus 156 ~~~~~~~~-------~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~g~Plal~~~~~~l 224 (761)
...+...+ -....+.+.+++.++..+++..++....... ...++.++.+++.+ |..+.|+.++-.+.
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~--~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPG--VVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccC--CCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 53322211 1134689999999999999998764221111 12233344454444 44666766653321
Q ss_pred --h--C---CCCHHHHHHHHhhhhhcccccccccccchhcccCCCCCCcchhHHhhhhcCCCC--CcccCHHHHHHH--H
Q 042791 225 --R--S---KSTVKEWQRILESEMWKVQEIGQDLLAPLLLSYNDLPSNSMVKQCFSYCTVFPK--DCIMNKEKLIDL--W 293 (761)
Q Consensus 225 --~--~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~--w 293 (761)
. + .-+.+....+.+.... ......+..|+. +.|..+..++...+ ...+....+... .
T Consensus 260 ~~a~~~~~~~I~~~~v~~a~~~~~~----------~~~~~~~~~L~~--~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~ 327 (394)
T PRK00411 260 LIAEREGSRKVTEEDVRKAYEKSEI----------VHLSEVLRTLPL--HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKE 327 (394)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHHH----------HHHHHHHhcCCH--HHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 1 1 1245555555543211 112345667776 66655554443321 123555555432 2
Q ss_pred HHcCCcccCCcchHHHHHHHHHHHHHhcCCccccccC--CCCCeeEEEEc
Q 042791 294 MAQGYLNADEDEEMETIGEEYFNILATRSFFQEFEKN--DDDNIRSCKMH 341 (761)
Q Consensus 294 ~~~g~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~--~~~~~~~~~~h 341 (761)
+++..-.. .-......++++.|.+.+++.....+ ..++.+.++.+
T Consensus 328 l~~~~~~~---~~~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 328 LCEELGYE---PRTHTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred HHHHcCCC---cCcHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 33222111 11223456689999999999865432 23444444443
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=3.4e-11 Score=143.07 Aligned_cols=300 Identities=16% Similarity=0.210 Sum_probs=182.2
Q ss_pred cccCCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC-CCC
Q 042791 3 RTISLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN-TFD 81 (761)
Q Consensus 3 ~~~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~-~~~ 81 (761)
+-.||.....+|-|+.-.+.+.+ ....++++|+|++|.||||++.+.+. . ++.++|+++.. ..+
T Consensus 6 k~~~p~~~~~~~~R~rl~~~l~~---------~~~~~~~~v~apaG~GKTtl~~~~~~--~----~~~~~w~~l~~~d~~ 70 (903)
T PRK04841 6 KLSRPVRLHNTVVRERLLAKLSG---------ANNYRLVLVTSPAGYGKTTLISQWAA--G----KNNLGWYSLDESDNQ 70 (903)
T ss_pred ccCCCCCccccCcchHHHHHHhc---------ccCCCeEEEECCCCCCHHHHHHHHHH--h----CCCeEEEecCcccCC
Confidence 44577777888889877766643 22467999999999999999999885 2 22588999864 345
Q ss_pred HHHHHHHHHHHhcCCCCC-------------CCcHHHHHHHHHHHh-C-CceEEEEEeCCCCCCccCchhHHHh-hcCCC
Q 042791 82 QIRIAKAIIEGLGESASG-------------LNEFQSLMSRIQSSI-K-GKKNFLVLDDVWDGDYNKWQPFFRC-LKNGL 145 (761)
Q Consensus 82 ~~~~~~~i~~~l~~~~~~-------------~~~~~~~~~~~~~~l-~-~~~~LlvlDd~~~~~~~~~~~l~~~-~~~~~ 145 (761)
...+...++..+....+. ..........+...+ . +.+++|||||++..+.......+.. +....
T Consensus 71 ~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~ 150 (903)
T PRK04841 71 PERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQP 150 (903)
T ss_pred HHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCC
Confidence 556666666666321111 012223333333333 2 6789999999976543444433333 33445
Q ss_pred CCcEEEEEecchh-h--hhhcCCCCeeecC----CCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHH
Q 042791 146 HGSKILVTTRNES-V--ARMMGSTDSISIK----QLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAK 218 (761)
Q Consensus 146 ~~~~iiiTtr~~~-~--~~~~~~~~~~~l~----~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 218 (761)
.+.++|||||... + ..........++. +|+.+|+.++|...... ....+.+.++++.|+|+|+++.
T Consensus 151 ~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-------~~~~~~~~~l~~~t~Gwp~~l~ 223 (903)
T PRK04841 151 ENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-------PIEAAESSRLCDDVEGWATALQ 223 (903)
T ss_pred CCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-------CCCHHHHHHHHHHhCChHHHHH
Confidence 5667889999732 1 1110112245555 99999999999876522 1234557899999999999999
Q ss_pred HHHHHhhCCCC-HHHHHHHHhhhhhccccc-ccccccchh-cccCCCCCCcchhHHhhhhcCCCCCcccCHHHHHHHHHH
Q 042791 219 VIGNLLRSKST-VKEWQRILESEMWKVQEI-GQDLLAPLL-LSYNDLPSNSMVKQCFSYCTVFPKDCIMNKEKLIDLWMA 295 (761)
Q Consensus 219 ~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~-~~~~~~~l~-~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~ 295 (761)
.++..+..... ..... .. .... ...+...+. ..++.+++ ..+..+...++++. +... +....
T Consensus 224 l~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~l~~~v~~~l~~--~~~~~l~~~a~~~~---~~~~-l~~~l-- 288 (903)
T PRK04841 224 LIALSARQNNSSLHDSA---RR----LAGINASHLSDYLVEEVLDNVDL--ETRHFLLRCSVLRS---MNDA-LIVRV-- 288 (903)
T ss_pred HHHHHHhhCCCchhhhh---Hh----hcCCCchhHHHHHHHHHHhcCCH--HHHHHHHHhccccc---CCHH-HHHHH--
Confidence 99887754421 11111 00 0110 112222222 34678887 88999999888763 3432 22211
Q ss_pred cCCcccCCcchHHHHHHHHHHHHHhcCCccccccCCCCCeeEEEEchHHHHHHHHHh
Q 042791 296 QGYLNADEDEEMETIGEEYFNILATRSFFQEFEKNDDDNIRSCKMHDIVHDFAQFVS 352 (761)
Q Consensus 296 ~g~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~hd~i~~~~~~~~ 352 (761)
... +.....+..+.+.+++...... .+ ..+++|+++++++....
T Consensus 289 ---~~~-------~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 289 ---TGE-------ENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---cCC-------CcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 111 1146678889999986432211 11 24678999999998764
No 23
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.38 E-value=1.6e-10 Score=121.43 Aligned_cols=304 Identities=13% Similarity=0.092 Sum_probs=170.1
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC------CeeEEEEecCCC
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF------EKVIWVCVSNTF 80 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f------~~~~~v~~~~~~ 80 (761)
-.-++.|+||+++++++..++...-. +..++.++|+|++|+|||+++++++++ +.... -.++|+++....
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCC
Confidence 34456899999999999999875322 234567899999999999999999973 32211 246788888777
Q ss_pred CHHHHHHHHHHHhc---CCCC-CCCcHHHHHHHHHHHh--CCceEEEEEeCCCCCCccCchhHHHhhcC----CC--CCc
Q 042791 81 DQIRIAKAIIEGLG---ESAS-GLNEFQSLMSRIQSSI--KGKKNFLVLDDVWDGDYNKWQPFFRCLKN----GL--HGS 148 (761)
Q Consensus 81 ~~~~~~~~i~~~l~---~~~~-~~~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~~~~~~~l~~~~~~----~~--~~~ 148 (761)
+...++..++.++. ...+ ......+....+.+.+ .+++++||||++|.-....-+.+...+.. .. ...
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeE
Confidence 88889999999884 2221 1223444455555555 35678999999976421111222222221 11 223
Q ss_pred EEEEEecchhhhhh----cC---CCCeeecCCCChHHHHHHHHHHhhCCCCCC-CCCchhHHHHHHHHhcCCCchhH-HH
Q 042791 149 KILVTTRNESVARM----MG---STDSISIKQLAEEECWSLFKQLAFFGCSFE-DCEKLEPIGRKIACKCKGLPLAA-KV 219 (761)
Q Consensus 149 ~iiiTtr~~~~~~~----~~---~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Plal-~~ 219 (761)
.+|+++........ .. ....+.+.+++.+|..+++..++....... ..+...+....++..+.|.|..+ .+
T Consensus 167 ~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~ 246 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDL 246 (365)
T ss_pred EEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHH
Confidence 45555554332111 11 124689999999999999998874211111 11222233455666677888443 33
Q ss_pred HHHHh----hC---CCCHHHHHHHHhhhhhcccccccccccchhcccCCCCCCcchhHHhhhhcCCC--CCcccCHHHHH
Q 042791 220 IGNLL----RS---KSTVKEWQRILESEMWKVQEIGQDLLAPLLLSYNDLPSNSMVKQCFSYCTVFP--KDCIMNKEKLI 290 (761)
Q Consensus 220 ~~~~l----~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ 290 (761)
+-.+. .. .-+.+....+.+.... ......+..|+. +.+..+..++... ++..+....+.
T Consensus 247 l~~a~~~a~~~~~~~it~~~v~~a~~~~~~----------~~~~~~i~~l~~--~~~~~l~ai~~~~~~~~~~~~~~~~~ 314 (365)
T TIGR02928 247 LRVAGEIAEREGAERVTEDHVEKAQEKIEK----------DRLLELIRGLPT--HSKLVLLAIANLAANDEDPFRTGEVY 314 (365)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----------HHHHHHHHcCCH--HHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 22111 11 1234444444433210 111234446665 5554444443211 33345555555
Q ss_pred HHH--HHcCCcccCCcchHHHHHHHHHHHHHhcCCcccccc
Q 042791 291 DLW--MAQGYLNADEDEEMETIGEEYFNILATRSFFQEFEK 329 (761)
Q Consensus 291 ~~w--~~~g~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~ 329 (761)
..+ +++..- ..........+++..|...+++.....
T Consensus 315 ~~y~~~~~~~~---~~~~~~~~~~~~l~~l~~~gli~~~~~ 352 (365)
T TIGR02928 315 EVYKEVCEDIG---VDPLTQRRISDLLNELDMLGLVEAEER 352 (365)
T ss_pred HHHHHHHHhcC---CCCCcHHHHHHHHHHHHhcCCeEEEEE
Confidence 522 222211 112234566778899999999987543
No 24
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.38 E-value=2.4e-12 Score=126.51 Aligned_cols=196 Identities=21% Similarity=0.193 Sum_probs=102.8
Q ss_pred eecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHH----
Q 042791 13 VCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKA---- 88 (761)
Q Consensus 13 ~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~---- 88 (761)
|+||++++++|.+++... ..+.++|+|+.|+|||+|++++.+ ..+.....++|+..............
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 799999999999999753 246899999999999999999997 34322224555544443322221111
Q ss_pred ---------HHHHhcCCC------CCCCcHHHHHHHHHHHh--CCceEEEEEeCCCCCC------ccCchhHHHhhcC--
Q 042791 89 ---------IIEGLGESA------SGLNEFQSLMSRIQSSI--KGKKNFLVLDDVWDGD------YNKWQPFFRCLKN-- 143 (761)
Q Consensus 89 ---------i~~~l~~~~------~~~~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~------~~~~~~l~~~~~~-- 143 (761)
+...+.... ............+.+.+ .+++++||+||++... ..-...+...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 111111110 01111122223333333 2345999999996643 0111223333333
Q ss_pred CCCCcEEEEEecchhhhhh--------cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCch
Q 042791 144 GLHGSKILVTTRNESVARM--------MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPL 215 (761)
Q Consensus 144 ~~~~~~iiiTtr~~~~~~~--------~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 215 (761)
......+|+++....+... .+....+.+++|+.+++++++...+-.. .. .+..++..++|+..+||+|.
T Consensus 153 ~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~-~~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 153 SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IK-LPFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HH
T ss_pred ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hc-ccCCHHHHHHHHHHhCCCHH
Confidence 1223345555554443332 2334469999999999999999976433 11 12345567999999999998
Q ss_pred hHHH
Q 042791 216 AAKV 219 (761)
Q Consensus 216 al~~ 219 (761)
.|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 25
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.37 E-value=1e-11 Score=121.40 Aligned_cols=171 Identities=19% Similarity=0.259 Sum_probs=110.1
Q ss_pred CCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHH
Q 042791 8 IDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAK 87 (761)
Q Consensus 8 ~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (761)
+...+++|....+.+..+ .+......+|||||+||||||+.++. .....| ..++...+
T Consensus 27 vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~------ 84 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTS------ 84 (436)
T ss_pred cChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccc------
Confidence 455566666666655555 44566788999999999999999998 444443 22222222
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHH-HHhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEec--chh--hhhh
Q 042791 88 AIIEGLGESASGLNEFQSLMSRIQ-SSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTR--NES--VARM 162 (761)
Q Consensus 88 ~i~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr--~~~--~~~~ 162 (761)
...+..++.+..+ ....++++++++|+|++.+..+++.++..+.+ |.-|+|-+. ++. +...
T Consensus 85 -----------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~---G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 85 -----------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVEN---GTIILIGATTENPSFELNPA 150 (436)
T ss_pred -----------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcC---CeEEEEeccCCCCCeeecHH
Confidence 2223333333332 23347899999999999888899888777666 665665433 332 2111
Q ss_pred -cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCC---CCchhHHHHHHHHhcCCCc
Q 042791 163 -MGSTDSISIKQLAEEECWSLFKQLAFFGCSFED---CEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 163 -~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~g~P 214 (761)
.....++++++|+.++..+++.+.+......-. ....++....++..++|--
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 244678999999999999999995433222111 1123456788888888854
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.35 E-value=1.1e-10 Score=117.04 Aligned_cols=182 Identities=16% Similarity=0.148 Sum_probs=113.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH----HH
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQ----SS 113 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~----~~ 113 (761)
.+.++|+|++|+||||+++.+++. ....-..+.|+ +....+..+++..++..++...... ........+. ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~--l~~~~~~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~-~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKR--LDQERVVAAKL-VNTRVDAEDLLRMVAADFGLETEGR-DKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHh--cCCCCeEEeee-eCCCCCHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHHH
Confidence 458899999999999999999973 32111112232 3334567788889998887654332 2222223332 22
Q ss_pred -hCCceEEEEEeCCCCCCccCchhHHHhhcCC---CCCcEEEEEecchhhhhhc----------CCCCeeecCCCChHHH
Q 042791 114 -IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG---LHGSKILVTTRNESVARMM----------GSTDSISIKQLAEEEC 179 (761)
Q Consensus 114 -l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~---~~~~~iiiTtr~~~~~~~~----------~~~~~~~l~~l~~~ea 179 (761)
..+++.++|+||+|......++.+....... .....|++|.... +...+ .....+++++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 2577899999999876544555544322211 1223455665432 21111 1134678999999999
Q ss_pred HHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHHh
Q 042791 180 WSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL 224 (761)
Q Consensus 180 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 224 (761)
.+++...+.............+..+.|++.++|.|..+..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999988765432211122345778999999999999999888765
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.34 E-value=1e-13 Score=133.71 Aligned_cols=127 Identities=24% Similarity=0.351 Sum_probs=68.0
Q ss_pred ceEEEEEeecCCCCCcc-cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccc
Q 042791 375 KVRHLGLNFQRGASFPM-SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIP 453 (761)
Q Consensus 375 ~~~~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp 453 (761)
....+.+..|.+..+|+ +|..+++||.|+|++|.+ ..|-++.|.+++.|..|-+.+ ++.|+.+|
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I------s~I~p~AF~GL~~l~~Lvlyg---------~NkI~~l~ 132 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI------SFIAPDAFKGLASLLSLVLYG---------NNKITDLP 132 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccch------hhcChHhhhhhHhhhHHHhhc---------CCchhhhh
Confidence 44455555566666553 456666666666666654 233444555666555554443 23344454
Q ss_pred cc-hhcccccCccccCCcCCccCc-hhhhccCCCcEEecCCccCcccccc-cccccccccEeecCCc
Q 042791 454 EN-VGKLIHLKYLNLSELGIERLP-ETLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRTLLNGET 517 (761)
Q Consensus 454 ~~-~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~ 517 (761)
.. |+.+..|+.|.+.-|.+.-++ ..+..+++|..|.+..|. ...++. .+..+..++.+.+.-|
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcC
Confidence 32 455566666666655555332 445566666666666554 444443 4455555555555444
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.32 E-value=2.6e-13 Score=140.35 Aligned_cols=57 Identities=16% Similarity=0.066 Sum_probs=39.2
Q ss_pred CCccceeecccccccc--------cCCCCCccceEeeecCCCCcC----CCcccCCC-CCccEEEEecCC
Q 042791 701 FPKLKYLKIWATEELE--------ETTDIPRLSSLTIWYCPKLKV----LPDYLLQT-TALQELRIWGCP 757 (761)
Q Consensus 701 ~~~L~~L~l~~~~~~~--------~~~~l~~L~~L~l~~~~~l~~----l~~~l~~l-~~L~~L~l~~c~ 757 (761)
.++|++|++++|.... ..+.+++|++|++++|...+. +...+... +.|++++|.++|
T Consensus 249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 4678888888776542 145567888899988876532 33334444 788899988876
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=1.8e-13 Score=132.18 Aligned_cols=140 Identities=20% Similarity=0.128 Sum_probs=101.7
Q ss_pred CCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCc
Q 042791 385 RGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKY 464 (761)
Q Consensus 385 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~ 464 (761)
...++|..+. +....+.|..|.+ ..+|++.|+.+++||.|||+.|.|+. .-|..|..++.|..
T Consensus 57 GL~eVP~~LP--~~tveirLdqN~I------~~iP~~aF~~l~~LRrLdLS~N~Is~---------I~p~AF~GL~~l~~ 119 (498)
T KOG4237|consen 57 GLTEVPANLP--PETVEIRLDQNQI------SSIPPGAFKTLHRLRRLDLSKNNISF---------IAPDAFKGLASLLS 119 (498)
T ss_pred CcccCcccCC--CcceEEEeccCCc------ccCChhhccchhhhceecccccchhh---------cChHhhhhhHhhhH
Confidence 4445664432 2456677776665 56788889999999999999777664 34677888888777
Q ss_pred cccCC-cCCccCch-hhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccc-cCCCCCCCcccCceee
Q 042791 465 LNLSE-LGIERLPE-TLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPI-GISKLTNLRTLDRFVV 541 (761)
Q Consensus 465 L~l~~-~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~ 541 (761)
|-+.+ |.|+.+|+ .|.+|..|+.|.+.-|+..-...+.+..+++|..|.+..|. ...++. .+..+.+++.+.+..+
T Consensus 120 Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 120 LVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred HHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcC
Confidence 77666 77998885 57888889999888877555566777888999888888884 344444 5777888887776555
Q ss_pred c
Q 042791 542 G 542 (761)
Q Consensus 542 ~ 542 (761)
.
T Consensus 199 p 199 (498)
T KOG4237|consen 199 P 199 (498)
T ss_pred c
Confidence 4
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.25 E-value=5.8e-13 Score=137.79 Aligned_cols=242 Identities=21% Similarity=0.193 Sum_probs=129.0
Q ss_pred HHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCcc-------CchhhhccCCCcEEecCCc
Q 042791 421 ELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIER-------LPETLCELYNLQKLDIRRC 493 (761)
Q Consensus 421 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~-------lp~~~~~l~~L~~L~l~~~ 493 (761)
..+..+.+|++|+++++.++. .....++..+...+.|++|+++++.+.. ++..+..+++|+.|++++|
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~-----~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGE-----EAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred HHHHHHhhccEEeecCCCCcH-----HHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence 445667778888888766542 2233455556666777888877776542 2334556667777777776
Q ss_pred cCccccccccccccc---ccEeecCCccccc----cccccCCCCCCCcccCceeecCccCCCCccCcccccCccCCceEE
Q 042791 494 RNLRELPAGIGKLMN---MRTLLNGETYALK----YMPIGISKLTNLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCS 566 (761)
Q Consensus 494 ~~~~~lp~~~~~l~~---L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 566 (761)
......+..+..+.+ |++|++++|.... .+...+..+ .++|+.|+++
T Consensus 92 ~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~----------------------~~~L~~L~L~---- 145 (319)
T cd00116 92 ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL----------------------PPALEKLVLG---- 145 (319)
T ss_pred CCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhC----------------------CCCceEEEcC----
Confidence 654444444433333 6666666664321 011111111 0223333333
Q ss_pred EcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCC-----C
Q 042791 567 IEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI-----F 641 (761)
Q Consensus 567 ~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~ 641 (761)
.+.+.. .....+...+..+..|+.|++++|.... +
T Consensus 146 ------------------------------~n~l~~----------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 185 (319)
T cd00116 146 ------------------------------RNRLEG----------ASCEALAKALRANRDLKELNLANNGIGDAGIRAL 185 (319)
T ss_pred ------------------------------CCcCCc----------hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHH
Confidence 222110 0111122222333445555554444321 1
Q ss_pred CchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccCCCcccccCCccceeeccccccccc----
Q 042791 642 PKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLGIEENIIAFPKLKYLKIWATEELEE---- 717 (761)
Q Consensus 642 p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---- 717 (761)
+..+..+++|+.|++++|... . .....+...+..+++|++|++++|.....
T Consensus 186 ~~~l~~~~~L~~L~L~~n~i~-------~------------------~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 186 AEGLKANCNLEVLDLNNNGLT-------D------------------EGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHHHHhCCCCCEEeccCCccC-------h------------------HHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 222334457777777777411 0 00001122244678888888888865532
Q ss_pred -CC----CCCccceEeeecCCCC----cCCCcccCCCCCccEEEEecCCC
Q 042791 718 -TT----DIPRLSSLTIWYCPKL----KVLPDYLLQTTALQELRIWGCPI 758 (761)
Q Consensus 718 -~~----~l~~L~~L~l~~~~~l----~~l~~~l~~l~~L~~L~l~~c~~ 758 (761)
.. ..+.|++|++++|... ..+...+..+++|+.+++++|+.
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 11 2479999999999764 23444556679999999999874
No 31
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.24 E-value=7.3e-10 Score=118.69 Aligned_cols=306 Identities=18% Similarity=0.242 Sum_probs=194.2
Q ss_pred cccCCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC-CC
Q 042791 3 RTISLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT-FD 81 (761)
Q Consensus 3 ~~~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~-~~ 81 (761)
+-.||+-....|-|..-++.+.+ ....|.+.|..|+|.||||++.+.+. ....-..|.|.++... .+
T Consensus 11 k~~~P~~~~~~v~R~rL~~~L~~---------~~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dnd 78 (894)
T COG2909 11 KLVRPVRPDNYVVRPRLLDRLRR---------ANDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDND 78 (894)
T ss_pred ccCCCCCcccccccHHHHHHHhc---------CCCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCC
Confidence 34455557777888777766655 34589999999999999999999974 3344567999997654 46
Q ss_pred HHHHHHHHHHHhcCCCCCC-------------CcHHHHHHHHHHHhC--CceEEEEEeCCCCCCccCchhHHH-hhcCCC
Q 042791 82 QIRIAKAIIEGLGESASGL-------------NEFQSLMSRIQSSIK--GKKNFLVLDDVWDGDYNKWQPFFR-CLKNGL 145 (761)
Q Consensus 82 ~~~~~~~i~~~l~~~~~~~-------------~~~~~~~~~~~~~l~--~~~~LlvlDd~~~~~~~~~~~l~~-~~~~~~ 145 (761)
+..+...++..++...+.. .+...+...+...+. .++..+|+||........+..-.. .+....
T Consensus 79 p~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P 158 (894)
T COG2909 79 PARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP 158 (894)
T ss_pred HHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC
Confidence 7788888887776443332 223334444433332 457899999987654444544444 444566
Q ss_pred CCcEEEEEecchhh---hhhcCCCCeeec----CCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHH
Q 042791 146 HGSKILVTTRNESV---ARMMGSTDSISI----KQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAK 218 (761)
Q Consensus 146 ~~~~iiiTtr~~~~---~~~~~~~~~~~l----~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 218 (761)
++-.+|+|||...- +...-.....++ -.|+.+|+.++|...... +-....++.+.+.+.|-+-|+.
T Consensus 159 ~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~ 231 (894)
T COG2909 159 ENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQ 231 (894)
T ss_pred CCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHH
Confidence 77889999998532 211111223333 378999999999986521 2334558899999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHhhhhhcccccccccccchhcccCCCCCCcchhHHhhhhcCCCCCcccCHHHHHHHHHHcCC
Q 042791 219 VIGNLLRSKSTVKEWQRILESEMWKVQEIGQDLLAPLLLSYNDLPSNSMVKQCFSYCTVFPKDCIMNKEKLIDLWMAQGY 298 (761)
Q Consensus 219 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~g~ 298 (761)
.++-.+++..+.++-..-+......+.++ ...-.++.+++ +.+..+..++++..- . +.++....
T Consensus 232 L~aLa~~~~~~~~q~~~~LsG~~~~l~dY------L~eeVld~Lp~--~l~~FLl~~svl~~f---~-~eL~~~Lt---- 295 (894)
T COG2909 232 LIALALRNNTSAEQSLRGLSGAASHLSDY------LVEEVLDRLPP--ELRDFLLQTSVLSRF---N-DELCNALT---- 295 (894)
T ss_pred HHHHHccCCCcHHHHhhhccchHHHHHHH------HHHHHHhcCCH--HHHHHHHHHHhHHHh---h-HHHHHHHh----
Confidence 99999885544444433332211111111 11245677887 888888877776431 1 12222211
Q ss_pred cccCCcchHHHHHHHHHHHHHhcCCccccccCCCCCeeEEEEchHHHHHHHHHhcc
Q 042791 299 LNADEDEEMETIGEEYFNILATRSFFQEFEKNDDDNIRSCKMHDIVHDFAQFVSSK 354 (761)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~hd~i~~~~~~~~~~ 354 (761)
-++.+..++++|..+++.-..- ++.+. -++.|.++.+|.......
T Consensus 296 --------g~~ng~amLe~L~~~gLFl~~L-dd~~~--WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 296 --------GEENGQAMLEELERRGLFLQRL-DDEGQ--WFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred --------cCCcHHHHHHHHHhCCCceeee-cCCCc--eeehhHHHHHHHHhhhcc
Confidence 1234678899999999875422 22233 477899999998876554
No 32
>PF05729 NACHT: NACHT domain
Probab=99.24 E-value=9.4e-11 Score=108.21 Aligned_cols=143 Identities=19% Similarity=0.292 Sum_probs=89.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcc----CCeeEEEEecCCCCHH---HHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSNTFDQI---RIAKAIIEGLGESASGLNEFQSLMSRIQ 111 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~----f~~~~~v~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 111 (761)
|+++|.|.+|+||||++++++........ +..++|+......... .+...+..+....... ... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP---IEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh---hHH---HHH
Confidence 47899999999999999999984222222 3456666665543322 3444444444322111 111 122
Q ss_pred HHh-CCceEEEEEeCCCCCCccC-------chhHH-HhhcC-CCCCcEEEEEecchhh---hhhcCCCCeeecCCCChHH
Q 042791 112 SSI-KGKKNFLVLDDVWDGDYNK-------WQPFF-RCLKN-GLHGSKILVTTRNESV---ARMMGSTDSISIKQLAEEE 178 (761)
Q Consensus 112 ~~l-~~~~~LlvlDd~~~~~~~~-------~~~l~-~~~~~-~~~~~~iiiTtr~~~~---~~~~~~~~~~~l~~l~~~e 178 (761)
... ..++++||+|++|+..... +..+. ..+.. ..++.++|||+|.... .........+++++|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 222 5789999999997743211 22222 23333 3467899999998554 3334445689999999999
Q ss_pred HHHHHHHHh
Q 042791 179 CWSLFKQLA 187 (761)
Q Consensus 179 a~~l~~~~~ 187 (761)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999999875
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.19 E-value=3.6e-10 Score=115.33 Aligned_cols=179 Identities=20% Similarity=0.163 Sum_probs=101.3
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAII 90 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 90 (761)
++|||+++.++.+..++...... ...++.++++|++|+|||++|+++++ .....+ .++..........+. ..+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~~---~~~~~~~~~~~~~l~-~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIAN--EMGVNL---KITSGPALEKPGDLA-AIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHH--HhCCCE---EEeccchhcCchhHH-HHH
Confidence 57999999999999988643210 12355688999999999999999998 333222 122111111111111 111
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcC-------------------CCCCcEEE
Q 042791 91 EGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKN-------------------GLHGSKIL 151 (761)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~-------------------~~~~~~ii 151 (761)
..+ +...++++||++.......+.+...+.. ..+.+-|.
T Consensus 77 ~~~----------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 77 TNL----------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred Hhc----------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 111 1233556666543222222222211110 01123344
Q ss_pred EEecchhhhhhc-C-CCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHH
Q 042791 152 VTTRNESVARMM-G-STDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGN 222 (761)
Q Consensus 152 iTtr~~~~~~~~-~-~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 222 (761)
.|++...+...+ . ....+++++++.++..+++.+.+..... ....+.+..|++.|+|.|..+..+..
T Consensus 135 ~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~----~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 135 ATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV----EIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred ecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 556654333221 1 1346799999999999999988753221 23456678999999999977655544
No 34
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.18 E-value=8.4e-10 Score=113.18 Aligned_cols=184 Identities=20% Similarity=0.125 Sum_probs=105.3
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (761)
.|..-++|+|+++.++.+..++...... ...++.++|+|++|+|||++|+.+++ .....+ .++..... .....
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~--~l~~~~---~~~~~~~~-~~~~~ 92 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIAN--EMGVNI---RITSGPAL-EKPGD 92 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHH--HhCCCe---EEEecccc-cChHH
Confidence 3456677999999999998888643211 23356788999999999999999998 343221 12222111 11111
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCC-------------------CC
Q 042791 86 AKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG-------------------LH 146 (761)
Q Consensus 86 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~-------------------~~ 146 (761)
+..++..+ ...-+++|||++.......+.+...+... .+
T Consensus 93 l~~~l~~l----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 93 LAAILTNL----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred HHHHHHhc----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 11222211 12346666666442221112222111110 11
Q ss_pred CcEEEEEecchhhhhhcC--CCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHH
Q 042791 147 GSKILVTTRNESVARMMG--STDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGN 222 (761)
Q Consensus 147 ~~~iiiTtr~~~~~~~~~--~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 222 (761)
.+-|..|++...+...+. ....+++++++.++..+++.+.+..... ....+.+..|++.|+|.|..+..+..
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV----EIDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHcCCCchHHHHHHH
Confidence 233445556443332211 1246899999999999999988754322 23456789999999999965555544
No 35
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.13 E-value=1.4e-09 Score=117.50 Aligned_cols=215 Identities=13% Similarity=0.063 Sum_probs=125.9
Q ss_pred CCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhh---hccC--CeeEEEEecCCCCHH
Q 042791 9 DEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEV---KRNF--EKVIWVCVSNTFDQI 83 (761)
Q Consensus 9 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~---~~~f--~~~~~v~~~~~~~~~ 83 (761)
-++.+.||++|+++|...|...-.+ .....+++|+|++|+|||++++.|.+.... .... -.+++|.+....+..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 3578999999999999988764321 222356789999999999999999873211 1112 236788888878888
Q ss_pred HHHHHHHHHhcCCCCC-CCcHHHHHHHHHHHhC---CceEEEEEeCCCCCCccCchhHHHhhcCC-CCCcEEEE--Eecc
Q 042791 84 RIAKAIIEGLGESASG-LNEFQSLMSRIQSSIK---GKKNFLVLDDVWDGDYNKWQPFFRCLKNG-LHGSKILV--TTRN 156 (761)
Q Consensus 84 ~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~---~~~~LlvlDd~~~~~~~~~~~l~~~~~~~-~~~~~iii--Ttr~ 156 (761)
.++..|+.++....+. .....+..+.+...+. ....+||||+++.......+.+...+.+. ..+++|++ ++.+
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 9999999888544322 2223344444444432 23459999999764333334444444432 23455443 3432
Q ss_pred hh----hhhhcC---CCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHHh
Q 042791 157 ES----VARMMG---STDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL 224 (761)
Q Consensus 157 ~~----~~~~~~---~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 224 (761)
.. +.+.+. ....+...|++.++..+++..++.............-+|+.++...|-.-.||.++-.+.
T Consensus 912 lDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 11 111111 123467799999999999999885421111111222223333333344556666554443
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.10 E-value=1.1e-10 Score=132.02 Aligned_cols=256 Identities=23% Similarity=0.267 Sum_probs=153.5
Q ss_pred ccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccc-hhcccccCccccCCcC
Q 042791 393 FFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPEN-VGKLIHLKYLNLSELG 471 (761)
Q Consensus 393 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 471 (761)
..+....|...+.++.+.. ++. -..++.|++|-+..|.- .+..++.. |..++.|++||+++|.
T Consensus 519 ~~~~~~~rr~s~~~~~~~~------~~~--~~~~~~L~tLll~~n~~--------~l~~is~~ff~~m~~LrVLDLs~~~ 582 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEH------IAG--SSENPKLRTLLLQRNSD--------WLLEISGEFFRSLPLLRVLDLSGNS 582 (889)
T ss_pred ccchhheeEEEEeccchhh------ccC--CCCCCccceEEEeecch--------hhhhcCHHHHhhCcceEEEECCCCC
Confidence 3445677888887776421 111 24567899998886531 13344443 6789999999999876
Q ss_pred -CccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcccCceeecCccCCCCc
Q 042791 472 -IERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSNT 550 (761)
Q Consensus 472 -i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~ 550 (761)
+.++|+.++.+-+|++|+++++. +..+|.++.++++|.+|++..+.....+|.....+++|++|.+............
T Consensus 583 ~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l 661 (889)
T KOG4658|consen 583 SLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLL 661 (889)
T ss_pred ccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhH
Confidence 78999999999999999999988 7899999999999999999999877777766777999999998765422222223
Q ss_pred cCcccccCccCCceEEEc--CCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCC
Q 042791 551 CRLESLKNLQLRGKCSIE--GLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNV 628 (761)
Q Consensus 551 ~~l~~L~~L~l~~~~~~~--~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L 628 (761)
..+.+|+.|..-.+.... .+..+.....+..... .+.+.. .........+..+.+|
T Consensus 662 ~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~-------~l~~~~---------------~~~~~~~~~~~~l~~L 719 (889)
T KOG4658|consen 662 KELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQ-------SLSIEG---------------CSKRTLISSLGSLGNL 719 (889)
T ss_pred HhhhcccchhhheeecchhHhHhhhhhhHHHHHHhH-------hhhhcc---------------cccceeecccccccCc
Confidence 333444444321110000 0011111111111100 000000 0111223344556788
Q ss_pred ceEEEEeeCCCCCC-ch-----hhh-hcCCcEEEeecCCCCCCCCCCCCCC-cceEEeccCcCceEe
Q 042791 629 EELWIIFYGGNIFP-KW-----LTL-LTNLRNLTLASCVNCEHLPPLGKLP-LEKLVIDDLKSVKSV 687 (761)
Q Consensus 629 ~~L~l~~~~~~~~p-~~-----~~~-l~~L~~L~l~~~~~~~~~~~~~~lp-l~~l~l~~l~~L~~~ 687 (761)
+.|.+.+|...... .+ ... ++++..+.+.+|.....+.+.-..| ++.+.+..|..+...
T Consensus 720 ~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 720 EELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred ceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence 88888888764321 11 112 4566666777776655544333334 666666665554433
No 37
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.05 E-value=2.6e-09 Score=97.87 Aligned_cols=188 Identities=20% Similarity=0.224 Sum_probs=106.0
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHH
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIR 84 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (761)
.+|..-++|||.++-+..+.-++..... .++....+.+|||||+||||||+.+++ +....|. ++.........+
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~i~k~~d 91 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPAIEKAGD 91 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--SCHH
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchhhhhHHH
Confidence 4566778999999999887766553211 034467889999999999999999998 5554442 222211111111
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCC--------CCc--------
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL--------HGS-------- 148 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~--------~~~-------- 148 (761)
+ ...+. .+ +++.++++|++++.+....+.++.+..++. +++
T Consensus 92 l---------------------~~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 92 L---------------------AAILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp H---------------------HHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred H---------------------HHHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1 11111 12 245688889999887777788877766532 111
Q ss_pred --E-EEEEecchhhhhhcCC-CC-eeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHH
Q 042791 149 --K-ILVTTRNESVARMMGS-TD-SISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNL 223 (761)
Q Consensus 149 --~-iiiTtr~~~~~~~~~~-~~-~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 223 (761)
. |=.|||..-+...+.. .. ..+++..+.+|-.+++.+.+..-. .....+.+.+|++.|.|-|....-+-+.
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 1 2245555333332222 22 347999999999999998764322 2345677999999999999766555444
Q ss_pred hh
Q 042791 224 LR 225 (761)
Q Consensus 224 l~ 225 (761)
.+
T Consensus 225 vr 226 (233)
T PF05496_consen 225 VR 226 (233)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 38
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.2e-08 Score=102.33 Aligned_cols=209 Identities=16% Similarity=0.193 Sum_probs=138.9
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC--CeeEEEEecCCCCHHH
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSNTFDQIR 84 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f--~~~~~v~~~~~~~~~~ 84 (761)
..-++.+.+|+++++++...|...-. +..+..+.|+|++|+|||+.++.+++ ++.... ..++|++|....+...
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHH
Confidence 34455599999999999988876553 44566699999999999999999998 444432 2279999999999999
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhC--CceEEEEEeCCCCCCccCchhHHHhhcCCCC-CcEEEE--Eecchhh
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSSIK--GKKNFLVLDDVWDGDYNKWQPFFRCLKNGLH-GSKILV--TTRNESV 159 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~--~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~-~~~iii--Ttr~~~~ 159 (761)
++..|+++++..........+..+.+.+.+. ++.+++|+|+++.-.....+.+...+..... .++|++ .+-+..+
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~ 168 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKF 168 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHH
Confidence 9999999998555445566677777777774 5789999999976333322455555544332 344333 3333322
Q ss_pred hh--------hcCCCCeeecCCCChHHHHHHHHHHhhCCCCC-CCCCchhHHHHHHHHhcCC-CchhHHHH
Q 042791 160 AR--------MMGSTDSISIKQLAEEECWSLFKQLAFFGCSF-EDCEKLEPIGRKIACKCKG-LPLAAKVI 220 (761)
Q Consensus 160 ~~--------~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g-~Plal~~~ 220 (761)
.. .++.. .+..+|-+.+|...++..++-..... ...+..-+....++...+| --.|+.++
T Consensus 169 ~~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 169 LDYLDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred HHHhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 22 23333 38899999999999999887532221 1223333444444444444 33444444
No 39
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.03 E-value=5.6e-09 Score=110.42 Aligned_cols=182 Identities=19% Similarity=0.187 Sum_probs=110.5
Q ss_pred CCCCCCceecccchHHH---HHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCH
Q 042791 6 SLIDEGEVCGRVDEKNE---LLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQ 82 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~---l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~ 82 (761)
+|-.-+++||++..+.. +.+++.. +..+.++++|++|+||||+|+.+++ .....| +.++.....
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~--~~~~~~-----~~l~a~~~~ 73 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAG--ATDAPF-----EALSAVTSG 73 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHH--HhCCCE-----EEEeccccc
Confidence 34455678998887666 7777753 3456788999999999999999997 333222 222221111
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-hCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEE--ecch--
Q 042791 83 IRIAKAIIEGLGESASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVT--TRNE-- 157 (761)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiT--tr~~-- 157 (761)
..-. ....+..... ..+++.++++|+++.......+.+...+.. +..++|. |.+.
T Consensus 74 ~~~i-----------------r~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~ 133 (413)
T PRK13342 74 VKDL-----------------REVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSF 133 (413)
T ss_pred HHHH-----------------HHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhh
Confidence 1111 1112222211 135778999999988666666666666554 4444443 3332
Q ss_pred hhhhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHH
Q 042791 158 SVARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIG 221 (761)
Q Consensus 158 ~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 221 (761)
.+... ......+++.++++++..+++.+.+....... .....+..+.+++.++|.+..+.-+.
T Consensus 134 ~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 134 EVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 12111 23356899999999999999998654321100 12335667889999999987664443
No 40
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.01 E-value=3.7e-09 Score=101.53 Aligned_cols=177 Identities=20% Similarity=0.226 Sum_probs=110.7
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHH
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIA 86 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 86 (761)
++..+++||.+..+..+++ +++...+.+||++|+||||||+-++... +. ..+.||..+.......-.
T Consensus 140 yvGQ~hlv~q~gllrs~ie---------q~~ipSmIlWGppG~GKTtlArlia~ts--k~--~SyrfvelSAt~a~t~dv 206 (554)
T KOG2028|consen 140 YVGQSHLVGQDGLLRSLIE---------QNRIPSMILWGPPGTGKTTLARLIASTS--KK--HSYRFVELSATNAKTNDV 206 (554)
T ss_pred hcchhhhcCcchHHHHHHH---------cCCCCceEEecCCCCchHHHHHHHHhhc--CC--CceEEEEEeccccchHHH
Confidence 3455566666555544444 4566778899999999999999999742 21 236677776654443334
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEE--ecchhh---hh
Q 042791 87 KAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVT--TRNESV---AR 161 (761)
Q Consensus 87 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiT--tr~~~~---~~ 161 (761)
++|.++-.. ...+.++|.++++|++.+....+.+.++.. .-.|..++|- |.++.. ..
T Consensus 207 R~ife~aq~---------------~~~l~krkTilFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln~a 268 (554)
T KOG2028|consen 207 RDIFEQAQN---------------EKSLTKRKTILFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLNAA 268 (554)
T ss_pred HHHHHHHHH---------------HHhhhcceeEEEeHHhhhhhhhhhhcccce---eccCceEEEecccCCCccchhHH
Confidence 444432211 122457899999999988877777766544 3446655553 444332 12
Q ss_pred hcCCCCeeecCCCChHHHHHHHHHHhh---CCCCCC---CC---CchhHHHHHHHHhcCCCc
Q 042791 162 MMGSTDSISIKQLAEEECWSLFKQLAF---FGCSFE---DC---EKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 162 ~~~~~~~~~l~~l~~~ea~~l~~~~~~---~~~~~~---~~---~~~~~~~~~i~~~~~g~P 214 (761)
.+..+.++.++.|..++...++.+... ....+. +. .....+.+-++..|.|-.
T Consensus 269 LlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 269 LLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 234577899999999999999988432 111111 11 123456777888888854
No 41
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.00 E-value=7.9e-09 Score=100.58 Aligned_cols=178 Identities=13% Similarity=0.107 Sum_probs=108.3
Q ss_pred CCCceec--ccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHH
Q 042791 9 DEGEVCG--RVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIA 86 (761)
Q Consensus 9 ~~~~~vg--r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 86 (761)
.-++|++ ....++++.+++.. ...+.|.|+|++|+|||++|+++++ ........++|+++.....
T Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~--~~~~~~~~~~~i~~~~~~~----- 79 (226)
T TIGR03420 13 TFDNFYAGGNAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACA--AAEERGKSAIYLPLAELAQ----- 79 (226)
T ss_pred hhcCcCcCCcHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEeHHHHHH-----
Confidence 3445663 34467777776542 2356899999999999999999998 4443444566776543211
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccC--chhHHHhhcC-CCCCcEEEEEecchh-----
Q 042791 87 KAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNK--WQPFFRCLKN-GLHGSKILVTTRNES----- 158 (761)
Q Consensus 87 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~--~~~l~~~~~~-~~~~~~iiiTtr~~~----- 158 (761)
.. .. +...+++ .-++||||++...... ...+...+.. ...+.++|+|++...
T Consensus 80 -~~--------------~~----~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~ 139 (226)
T TIGR03420 80 -AD--------------PE----VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPL 139 (226)
T ss_pred -hH--------------HH----HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCc
Confidence 00 00 1111222 2389999997643322 3444444332 122447888887522
Q ss_pred ----hhhhcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHH
Q 042791 159 ----VARMMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNL 223 (761)
Q Consensus 159 ----~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 223 (761)
+...+.....+++.++++++...++...+.... .....+..+.+++.+.|+|..+.-+...
T Consensus 140 ~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~----~~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 140 RLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG----LQLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred ccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 122222245799999999999999987653221 1234566788888999999877766443
No 42
>PRK06893 DNA replication initiation factor; Validated
Probab=98.98 E-value=1.3e-08 Score=98.20 Aligned_cols=156 Identities=15% Similarity=0.192 Sum_probs=95.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGK 117 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 117 (761)
.+.++|||++|+|||+|++++++ ........+.|+++... ...... +.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~~~~---~~~~~~---------------------~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPLSKS---QYFSPA---------------------VLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeHHHh---hhhhHH---------------------HHhhcc-c
Confidence 35689999999999999999998 45444556778866421 000001 111111 2
Q ss_pred eEEEEEeCCCCCC-ccCch-hHHHhhcCC-CCCcEEE-EEecc---------hhhhhhcCCCCeeecCCCChHHHHHHHH
Q 042791 118 KNFLVLDDVWDGD-YNKWQ-PFFRCLKNG-LHGSKIL-VTTRN---------ESVARMMGSTDSISIKQLAEEECWSLFK 184 (761)
Q Consensus 118 ~~LlvlDd~~~~~-~~~~~-~l~~~~~~~-~~~~~ii-iTtr~---------~~~~~~~~~~~~~~l~~l~~~ea~~l~~ 184 (761)
.-++|+||+|... ...|. .+...+... ..+..+| +|++. +.+...+.....++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999997632 22232 333333322 1244454 55543 2333334445688999999999999999
Q ss_pred HHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHHh
Q 042791 185 QLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL 224 (761)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 224 (761)
+.+.... ..-.+++..-|++.+.|..-.+..+-..+
T Consensus 172 ~~a~~~~----l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRG----IELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9886432 23445678889998888776655544433
No 43
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=2.5e-08 Score=103.44 Aligned_cols=198 Identities=17% Similarity=0.178 Sum_probs=115.9
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHH
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIA 86 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 86 (761)
|..-++++|.+..++.+.+.+.... -++.+.++|++|+||||+|+.+++. +....... --++....+-..+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~--l~c~~~~~-~~pc~~c~~c~~~~ 83 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKS--LNCQNGIT-SNPCRKCIICKEIE 83 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHH--hcCCCCCC-CCCCCCCHHHHHHh
Confidence 4556789999999999999887432 3577899999999999999999973 32111000 00000000000000
Q ss_pred HHHHHHhcC-CCCCCCcHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc-hhh
Q 042791 87 KAIIEGLGE-SASGLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESV 159 (761)
Q Consensus 87 ~~i~~~l~~-~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~-~~~ 159 (761)
....-.+.. ........+.. ..+.+.+ .+++-++|+|+++......++.++..+.......++|++|.+ ..+
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred cCCCCceEEecccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 000000000 00000111111 1121111 245669999999876655677788777765556677776654 334
Q ss_pred hhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhH
Q 042791 160 ARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAA 217 (761)
Q Consensus 160 ~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 217 (761)
...+ +....+++.+++.++..+.+...+..... ...++.+..|++.++|.|..+
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~----~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESI----DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 3332 33568999999999999999887644221 223456788999999988543
No 44
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=1.1e-08 Score=112.51 Aligned_cols=203 Identities=14% Similarity=0.157 Sum_probs=122.1
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-C-Ce-eEEEEecCCCCH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-F-EK-VIWVCVSNTFDQ 82 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f-~~-~~~v~~~~~~~~ 82 (761)
+|..-+++||.+..++.|.+++...+ -++..+++|++|+||||+|+.+++. +... . .. .+..+ .....+
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~--Lnce~~~~~~pCg~C-~sC~~i 82 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKG--LNCEQGVTATPCGVC-SSCVEI 82 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHh--ccCccCCCCCCCCCc-hHHHHH
Confidence 34566789999999999999987432 2566689999999999999999983 3221 0 00 00000 000000
Q ss_pred HHHHHHHHHHhcCC-CCCCCcHHHHHHHHHH-HhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc-hhh
Q 042791 83 IRIAKAIIEGLGES-ASGLNEFQSLMSRIQS-SIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESV 159 (761)
Q Consensus 83 ~~~~~~i~~~l~~~-~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~-~~~ 159 (761)
.....-.+..+... .....+..++.+.+.. ...+++-++|||+++......++.++..+.......++|++|.+ ..+
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kL 162 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhc
Confidence 00000000000000 0111112222222221 12356779999999888888888888888876656777766655 444
Q ss_pred hhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 160 ARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 160 ~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
... ......+++.+++.++..+++.+.+.... .....+.+..|++.++|.|..+..+
T Consensus 163 l~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg----I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 163 PVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ----LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred hHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 332 23467899999999999999988764321 1234456888999999988644433
No 45
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=1.9e-08 Score=107.34 Aligned_cols=183 Identities=16% Similarity=0.159 Sum_probs=119.3
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc------------------
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN------------------ 67 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~------------------ 67 (761)
+|..-+++||.+...+.|.+++...+ -++.+.++|++|+||||+|+.+++. +...
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~--LnC~~~~~~~pCg~C~sC~~I~ 82 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKC--LNCETGVTSTPCEVCATCKAVN 82 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH--hCCCcCCCCCCCccCHHHHHHh
Confidence 34556779999999999999997543 3578899999999999999999873 2211
Q ss_pred ---CCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HhCCceEEEEEeCCCCCCccCchhHHHhhcC
Q 042791 68 ---FEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQS-SIKGKKNFLVLDDVWDGDYNKWQPFFRCLKN 143 (761)
Q Consensus 68 ---f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 143 (761)
+.-++.+..+.....+ +..+++..... ...++.-++|||+++..+...++.++..+..
T Consensus 83 ~g~hpDviEIDAAs~~~Vd------------------dIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE 144 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVE------------------DTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE 144 (702)
T ss_pred cCCCCceEEecccccCCHH------------------HHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc
Confidence 1111222211111111 11111111111 1134566899999988777777888888877
Q ss_pred CCCCcEEEEEecch-hhhhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhH
Q 042791 144 GLHGSKILVTTRNE-SVARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAA 217 (761)
Q Consensus 144 ~~~~~~iiiTtr~~-~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 217 (761)
.....++|++|.+. .+... ......+++++++.++..+.+.+.+..... ....+....|++.++|.+..+
T Consensus 145 PP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI----~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 145 PPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI----AADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred CCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 65567788777663 23222 244678999999999999999887644321 234556788999999977444
No 46
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.93 E-value=3.8e-08 Score=112.18 Aligned_cols=288 Identities=16% Similarity=0.150 Sum_probs=168.7
Q ss_pred ceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEe---cCCCCHH---HH
Q 042791 12 EVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV---SNTFDQI---RI 85 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~---~~~~~~~---~~ 85 (761)
+++||+.+++.+...+.... .+...++.|.|.+|||||+++++|.. .+.+.+...+--.+ ..+.... ..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHH
Confidence 47999999999999998876 46678999999999999999999998 55544322221112 1222211 12
Q ss_pred HHHHHHHh-------------------cCCC-----------------CCC-----CcHHH-----HHHHHHHHh-CCce
Q 042791 86 AKAIIEGL-------------------GESA-----------------SGL-----NEFQS-----LMSRIQSSI-KGKK 118 (761)
Q Consensus 86 ~~~i~~~l-------------------~~~~-----------------~~~-----~~~~~-----~~~~~~~~l-~~~~ 118 (761)
++++..++ +... +.. ...+. ....+.... +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 22333222 1100 000 00011 122222222 3569
Q ss_pred EEEEEeCCCCCCccCchhHHHhhcCCCC------CcEEEEEecch--hhhhhcCCCCeeecCCCChHHHHHHHHHHhhCC
Q 042791 119 NFLVLDDVWDGDYNKWQPFFRCLKNGLH------GSKILVTTRNE--SVARMMGSTDSISIKQLAEEECWSLFKQLAFFG 190 (761)
Q Consensus 119 ~LlvlDd~~~~~~~~~~~l~~~~~~~~~------~~~iiiTtr~~--~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~ 190 (761)
.++|+||+++.+...++-+......... ..-.+.|.+.. .+...-.....+.+.||+..+...++.......
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 9999999977666666665554443320 11123333332 233323345789999999999999999876332
Q ss_pred CCCCCCCchhHHHHHHHHhcCCCchhHHHHHHHhhCC------CCHHHHHHHHhhhhhcccccccccccchhcccCCCCC
Q 042791 191 CSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSK------STVKEWQRILESEMWKVQEIGQDLLAPLLLSYNDLPS 264 (761)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~l~~ 264 (761)
. ....+....|+++..|+|+-+..+-..+.+. .+...|..-.... ......+++.+.+..-.+.|+.
T Consensus 236 ~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i--~~~~~~~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 K-----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL--GILATTDAVVEFLAARLQKLPG 308 (849)
T ss_pred c-----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc--CCchhhHHHHHHHHHHHhcCCH
Confidence 1 2345668999999999999999998888774 2345554433211 1111222344456677788887
Q ss_pred CcchhHHhhhhcCCCCCcccCHHHHHHHHHHcCCcccCCcchHHHHHHHHHHHHHhcCCcc
Q 042791 265 NSMVKQCFSYCTVFPKDCIMNKEKLIDLWMAQGYLNADEDEEMETIGEEYFNILATRSFFQ 325 (761)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~~~L~~~sll~ 325 (761)
..+..+...+++... |+...+-..+- ......+...++.+....++.
T Consensus 309 --~t~~Vl~~AA~iG~~--F~l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~ 355 (849)
T COG3899 309 --TTREVLKAAACIGNR--FDLDTLAALAE----------DSPALEAAALLDALQEGLILP 355 (849)
T ss_pred --HHHHHHHHHHHhCcc--CCHHHHHHHHh----------hchHHHHHHHHHHhHhhceec
Confidence 778777777777644 44444433321 123344555566666555553
No 47
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.90 E-value=3.5e-08 Score=102.64 Aligned_cols=201 Identities=14% Similarity=0.102 Sum_probs=114.4
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-C-CeeEEEEecCCCCH--
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-F-EKVIWVCVSNTFDQ-- 82 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f-~~~~~v~~~~~~~~-- 82 (761)
|..-++++|++..++.+.+++... ..+.+.++|++|+||||+|+++++ ..... + ..++++++......
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~--~l~~~~~~~~~~~i~~~~~~~~~~ 82 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALAR--ELYGDPWENNFTEFNVADFFDQGK 82 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH--HhcCcccccceEEechhhhhhcch
Confidence 334467999999999999988643 334688999999999999999997 33322 1 22445544331100
Q ss_pred HHHHH--HHHHHhcCC-CCCCCcHHHHHH---HHHHHh--CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEe
Q 042791 83 IRIAK--AIIEGLGES-ASGLNEFQSLMS---RIQSSI--KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT 154 (761)
Q Consensus 83 ~~~~~--~i~~~l~~~-~~~~~~~~~~~~---~~~~~l--~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTt 154 (761)
..+.. .....+... .......+...+ ...... ...+-++|+||++.........+...+......+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 83 KYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred hhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEe
Confidence 00000 000000000 000001111111 111111 1345589999997654444455555555544456787776
Q ss_pred cc-hhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHH
Q 042791 155 RN-ESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKV 219 (761)
Q Consensus 155 r~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 219 (761)
.. ..+...+ .....+++.+++.++..+++.+.+..... ....+.+..+++.++|.+-.+..
T Consensus 163 ~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~----~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 163 RQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV----DYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 54 3232222 22457899999999999999887643322 23356688899999987755443
No 48
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.90 E-value=3.6e-09 Score=93.01 Aligned_cols=115 Identities=20% Similarity=0.230 Sum_probs=80.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhcc-----CCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRN-----FEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQS 112 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-----f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 112 (761)
.+.++|+|++|+|||+++++++++ .... -..++|+.+....+...+...++..++..........+..+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLID 81 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 478999999999999999999983 3221 355779998888899999999999999877665667777777877
Q ss_pred HhCCc-eEEEEEeCCCCC-CccCchhHHHhhcCCCCCcEEEEEecc
Q 042791 113 SIKGK-KNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRN 156 (761)
Q Consensus 113 ~l~~~-~~LlvlDd~~~~-~~~~~~~l~~~~~~~~~~~~iiiTtr~ 156 (761)
.+... ..+||+||++.- +...++.+.... + ..+.++|++.+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 77544 469999999764 333333333222 2 446678887765
No 49
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=2.6e-08 Score=105.99 Aligned_cols=199 Identities=14% Similarity=0.130 Sum_probs=118.5
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc----CCeeEEEEecCCCCH
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSNTFDQ 82 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~----f~~~~~v~~~~~~~~ 82 (761)
+..-+++||.+..++.|.+.+...+ -.+.+.++|+.|+||||+|+.+++. +... -.+...-.|+..
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAka--LnC~~p~~~~g~~~~PCG~C--- 81 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKS--LNCTGADGEGGITAQPCGQC--- 81 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHH--hcCCCccccccCCCCCCccc---
Confidence 4455679999999999999997543 3577799999999999999999973 2210 000000001000
Q ss_pred HHHHHHHHHH-----hcCCCCCCCcHHHHHHHHHHH----hCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEE
Q 042791 83 IRIAKAIIEG-----LGESASGLNEFQSLMSRIQSS----IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVT 153 (761)
Q Consensus 83 ~~~~~~i~~~-----l~~~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiT 153 (761)
.....|... +..........+++.+.+... ..++.-++|||+++..+...++.++..+..-....++|++
T Consensus 82 -~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILa 160 (700)
T PRK12323 82 -RACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILA 160 (700)
T ss_pred -HHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEE
Confidence 000000000 000000011122222222111 1345669999999887777888888887765556666655
Q ss_pred ecc-hhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 154 TRN-ESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 154 tr~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
|.+ ..+...+ ..+..+.+..++.++..+.+.+.+..... ....+..+.|++.++|.|.....+
T Consensus 161 Ttep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi----~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 161 TTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI----AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred eCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 554 4444332 33678999999999999999887643211 123345688999999988644433
No 50
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.89 E-value=3.6e-08 Score=106.36 Aligned_cols=187 Identities=14% Similarity=0.126 Sum_probs=119.6
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhc-------------------c
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR-------------------N 67 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~-------------------~ 67 (761)
+-.-+++||.+..++.|.+++...+ -.+.++++|+.|+||||+|+.+++...... .
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~ 86 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGR 86 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCC
Confidence 4455679999999999999987432 356778999999999999999987321111 1
Q ss_pred CCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-hCCceEEEEEeCCCCCCccCchhHHHhhcCCCC
Q 042791 68 FEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLH 146 (761)
Q Consensus 68 f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~ 146 (761)
|..+++++.......+ +..++++..... ..++.-++|||+++..+...++.++..+.....
T Consensus 87 h~DviEIDAas~rgVD------------------dIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~ 148 (830)
T PRK07003 87 FVDYVEMDAASNRGVD------------------EMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPP 148 (830)
T ss_pred CceEEEecccccccHH------------------HHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCC
Confidence 1112222221111111 111111111111 124556899999988777778888888877666
Q ss_pred CcEEEEEecch-hhhhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc-hhHHHH
Q 042791 147 GSKILVTTRNE-SVARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP-LAAKVI 220 (761)
Q Consensus 147 ~~~iiiTtr~~-~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 220 (761)
..++|++|++. .+... ...+..+.+++++.++..+.+.+.+..... ....+....|++.++|.. -++..+
T Consensus 149 ~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI----~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI----AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred CeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 77888887764 33322 234678999999999999999887643211 234566788999998865 455543
No 51
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=2.5e-08 Score=103.56 Aligned_cols=199 Identities=14% Similarity=0.097 Sum_probs=119.9
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (761)
+|..-+++||.+..++.|..++.... -++.+.++|++|+||||+|+.+++. +..... .-...+....+-..+
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~-~~~~pCg~C~sC~~i 84 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKR--LNCENP-IGNEPCNECTSCLEI 84 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHh--cCcccc-cCccccCCCcHHHHH
Confidence 34556778999999999999987532 2456899999999999999999973 322110 001111111111111
Q ss_pred HHHHHHHhc---C-CCCCCCcHHHHHHHHHHH-hCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc-hhh
Q 042791 86 AKAIIEGLG---E-SASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESV 159 (761)
Q Consensus 86 ~~~i~~~l~---~-~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~-~~~ 159 (761)
.......+. . ......+..++.+.+... ..++.-++|||+++..+...++.++..+........+|++|.. ..+
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 111100000 0 001111222222222221 2356679999999887777888888888765445555555544 444
Q ss_pred hhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchh
Q 042791 160 ARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLA 216 (761)
Q Consensus 160 ~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 216 (761)
...+ .....+.+.+++.++..+++.+.+...+. ...++....|++.++|.+.-
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi----~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV----QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCChHHH
Confidence 3332 33567999999999999999887643221 23456688999999998844
No 52
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=7.7e-08 Score=102.88 Aligned_cols=187 Identities=18% Similarity=0.205 Sum_probs=120.5
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhc-------------------
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR------------------- 66 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~------------------- 66 (761)
+|..-+++||.+..++.+...+...+ .++.+.++|++|+||||+|+.+++ .+..
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk--~L~c~~~~~~~pCg~C~sC~~i~ 83 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAK--CLNCKTGVTAEPCNKCENCVAIN 83 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH--HhCCCCCCCCCCCcccHHHHHHh
Confidence 34566779999999999999987432 356688999999999999999997 2221
Q ss_pred --cCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-hCCceEEEEEeCCCCCCccCchhHHHhhcC
Q 042791 67 --NFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKN 143 (761)
Q Consensus 67 --~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 143 (761)
.|..++++........+ +..++.+.+... ..+++-++|+|+++..+...++.++..+..
T Consensus 84 ~~~~~dlieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe 145 (546)
T PRK14957 84 NNSFIDLIEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE 145 (546)
T ss_pred cCCCCceEEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc
Confidence 11122222221111111 122222222211 235667999999988777778888888887
Q ss_pred CCCCcEEEEEecc-hhhhhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCch-hHHHH
Q 042791 144 GLHGSKILVTTRN-ESVARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPL-AAKVI 220 (761)
Q Consensus 144 ~~~~~~iiiTtr~-~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 220 (761)
....+++|++|.+ ..+... ......+++++++.++..+.+.+.+...+. ....+....|++.++|.+. |+..+
T Consensus 146 pp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 146 PPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6556666655544 444433 234678999999999999888886543221 2344557889999999664 44444
Q ss_pred H
Q 042791 221 G 221 (761)
Q Consensus 221 ~ 221 (761)
-
T Consensus 222 e 222 (546)
T PRK14957 222 D 222 (546)
T ss_pred H
Confidence 3
No 53
>PLN03025 replication factor C subunit; Provisional
Probab=98.84 E-value=5e-08 Score=99.62 Aligned_cols=184 Identities=13% Similarity=0.106 Sum_probs=112.2
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhh-hccCC-eeEEEEecCCCCHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEV-KRNFE-KVIWVCVSNTFDQI 83 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~-~~~f~-~~~~v~~~~~~~~~ 83 (761)
+|..-++++|.++.++.+..++... ..+.+.++|++|+||||+|+++++ .. ...|. .++-++.++.....
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~eln~sd~~~~~ 79 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAH--ELLGPNYKEAVLELNASDDRGID 79 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHH--HHhcccCccceeeecccccccHH
Confidence 3455567899999999888887632 334578999999999999999997 33 22232 12222222222222
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc-hhhhhh
Q 042791 84 RIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVARM 162 (761)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~-~~~~~~ 162 (761)
..+.+.......... ...++.-++|+|+++.........+...+......+++|+++.. ..+.+.
T Consensus 80 -~vr~~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~ 145 (319)
T PLN03025 80 -VVRNKIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEP 145 (319)
T ss_pred -HHHHHHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchh
Confidence 122221111100000 00134669999999886666666776666654455677776654 222222
Q ss_pred c-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCch
Q 042791 163 M-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPL 215 (761)
Q Consensus 163 ~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 215 (761)
+ .....+++.++++++..+.+...+..... ....+....|++.++|...
T Consensus 146 L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi----~i~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 146 IQSRCAIVRFSRLSDQEILGRLMKVVEAEKV----PYVPEGLEAIIFTADGDMR 195 (319)
T ss_pred HHHhhhcccCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHH
Confidence 1 23457999999999999999887744322 2234567889999988663
No 54
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=6.8e-08 Score=98.42 Aligned_cols=200 Identities=15% Similarity=0.147 Sum_probs=124.4
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc----CCeeEEEEecCCC
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSNTF 80 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~----f~~~~~v~~~~~~ 80 (761)
++|.+..+++|.++..+.+...+...+ .++.+.++|+.|+||||+|+.+++ .+-.. +... ......
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~--~Llc~~~~~~~~~---~~~~~~ 86 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLAN--HILSHPDPAEAPE---TLADPD 86 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHH--HHcCCCccccCcc---ccCCCC
Confidence 567788889999999999999997543 367899999999999999999997 33221 1111 000011
Q ss_pred CHHHHHHHHHHHhcC-------C--C-----CCCCcHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccCchhHHHhh
Q 042791 81 DQIRIAKAIIEGLGE-------S--A-----SGLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCL 141 (761)
Q Consensus 81 ~~~~~~~~i~~~l~~-------~--~-----~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~ 141 (761)
......+.+...-.+ . . ......+++ ..+.+.+ .+++-++|||+++..+....+.++..+
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~L 165 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTL 165 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHH
Confidence 111122233222110 0 0 111223333 2333333 355679999999887777788888888
Q ss_pred cCCCCCcEEE-EEecchhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHH
Q 042791 142 KNGLHGSKIL-VTTRNESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKV 219 (761)
Q Consensus 142 ~~~~~~~~ii-iTtr~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 219 (761)
........+| +|++...+...+ .....+.+.+++.++..+++....... ....+.+..+++.++|.|.....
T Consensus 166 EEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~------~~~~~~~~~i~~~s~G~pr~Al~ 239 (351)
T PRK09112 166 EEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ------GSDGEITEALLQRSKGSVRKALL 239 (351)
T ss_pred hcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc------CCCHHHHHHHHHHcCCCHHHHHH
Confidence 7754445544 444444443332 335689999999999999998843111 12244578899999999976554
Q ss_pred HH
Q 042791 220 IG 221 (761)
Q Consensus 220 ~~ 221 (761)
+.
T Consensus 240 ll 241 (351)
T PRK09112 240 LL 241 (351)
T ss_pred HH
Confidence 43
No 55
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=9.2e-08 Score=100.69 Aligned_cols=184 Identities=18% Similarity=0.155 Sum_probs=120.9
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhh--------------------
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVK-------------------- 65 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~-------------------- 65 (761)
+|..-+++||.+..++.+.+.+...+ -++...++|+.|+||||+|+.+++ .+.
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk--~LnC~~~~~~~pCg~C~~C~~i~ 80 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISL--CLNCSNGPTSDPCGTCHNCISIK 80 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHH--HHcCcCCCCCCCccccHHHHHHh
Confidence 35566789999999999988886432 356899999999999999999986 221
Q ss_pred -ccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCC
Q 042791 66 -RNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG 144 (761)
Q Consensus 66 -~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~ 144 (761)
+.+.-++.++.+.....+++- .+.+.... .-..++.-++|+|+++..+...++.++..+..-
T Consensus 81 ~~~~~Dv~eidaas~~~vddIR-~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP 143 (491)
T PRK14964 81 NSNHPDVIEIDAASNTSVDDIK-VILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP 143 (491)
T ss_pred ccCCCCEEEEecccCCCHHHHH-HHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCC
Confidence 112223444433333332221 12111110 001245668999999877667788888888876
Q ss_pred CCCcEEEEEecc-hhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhH
Q 042791 145 LHGSKILVTTRN-ESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAA 217 (761)
Q Consensus 145 ~~~~~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 217 (761)
.+.+++|++|.. ..+...+ .....+++.+++.++..+.+.+.+..... ....+.+..|++.++|.+..+
T Consensus 144 p~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi----~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 144 APHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI----EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred CCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 666777766644 4444332 34568999999999999999987754322 234556788999999877543
No 56
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=1.2e-08 Score=108.87 Aligned_cols=202 Identities=19% Similarity=0.183 Sum_probs=117.6
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (761)
+|..-++++|.+...+.|..++.... -++.+.++|++|+||||+|+.+++.......+...+|.+.+.. .....
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~ 82 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRG 82 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcC
Confidence 34555678999999999999887532 3567799999999999999999973211111221222211000 00000
Q ss_pred HHHHHHHhcCC-CCCCCcHHHHHHHHHH-HhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc-hhhhhh
Q 042791 86 AKAIIEGLGES-ASGLNEFQSLMSRIQS-SIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVARM 162 (761)
Q Consensus 86 ~~~i~~~l~~~-~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~-~~~~~~ 162 (761)
...-+..+... ........++.+.+.. -..+++-++|||+++......++.++..+........+|+++.. ..+...
T Consensus 83 ~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 83 AHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162 (504)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChH
Confidence 00000000000 0011111222121111 11245669999999876666777888877765555555655543 344332
Q ss_pred c-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhH
Q 042791 163 M-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAA 217 (761)
Q Consensus 163 ~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 217 (761)
+ .....+++.+++.++..+.+.+.+..... ....+.+..|++.++|.+.-+
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~egi----~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR----EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 2 23568999999999999999987754322 223456889999999988544
No 57
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.82 E-value=8.7e-09 Score=96.92 Aligned_cols=63 Identities=22% Similarity=0.273 Sum_probs=39.3
Q ss_pred ceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC
Q 042791 12 EVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT 79 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (761)
+||||+++++++...+.... ...++.++|+|++|+|||+++++++. ........++.+.+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~---~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ---SGSPRNLLLTGESGSGKTSLLRALLD--RLAERGGYVISINCDDS 63 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS---S-----EEE-B-TTSSHHHHHHHHHH--HHHHHT--EEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHHH---cCCCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCEEEEEEEecc
Confidence 48999999999999996222 45578999999999999999999998 45544333444554443
No 58
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=2.2e-07 Score=98.55 Aligned_cols=189 Identities=18% Similarity=0.195 Sum_probs=115.2
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc------------------
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN------------------ 67 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~------------------ 67 (761)
+|..-+++||.+...+.+...+...+ -++.+.++|++|+||||+|+.+++. +...
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~--l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKS--LNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH--hccccCCCCCCCcccHHHHHHh
Confidence 45566789999988888888876432 2466889999999999999999873 2110
Q ss_pred ---CCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HhCCceEEEEEeCCCCCCccCchhHHHhhcC
Q 042791 68 ---FEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQS-SIKGKKNFLVLDDVWDGDYNKWQPFFRCLKN 143 (761)
Q Consensus 68 ---f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 143 (761)
+..+..+..+.....+. ..++.+.+.. ...+++-++|+|+++......++.++..+..
T Consensus 82 ~g~~~dv~el~aa~~~gid~------------------iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~ 143 (472)
T PRK14962 82 EGTFMDVIELDAASNRGIDE------------------IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE 143 (472)
T ss_pred cCCCCccEEEeCcccCCHHH------------------HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh
Confidence 00112222211111111 1111111111 1234667999999977655566777777766
Q ss_pred CCCCcEEEEEecc-hhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCC-CchhHHHH
Q 042791 144 GLHGSKILVTTRN-ESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKG-LPLAAKVI 220 (761)
Q Consensus 144 ~~~~~~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~ 220 (761)
......+|++|.+ ..+...+ .....+++.+++.++....+.+.+..... ...++.+..|++.++| .+.++..+
T Consensus 144 p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi----~i~~eal~~Ia~~s~GdlR~aln~L 219 (472)
T PRK14962 144 PPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI----EIDREALSFIAKRASGGLRDALTML 219 (472)
T ss_pred CCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 4444555544443 3443332 33568899999999999999887743221 2334567888887765 56676666
Q ss_pred HHH
Q 042791 221 GNL 223 (761)
Q Consensus 221 ~~~ 223 (761)
-..
T Consensus 220 e~l 222 (472)
T PRK14962 220 EQV 222 (472)
T ss_pred HHH
Confidence 543
No 59
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=1.2e-07 Score=98.04 Aligned_cols=192 Identities=10% Similarity=0.078 Sum_probs=112.8
Q ss_pred CceecccchHHHHHHHHhcCCcc----CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSE----QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIA 86 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~----~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 86 (761)
++++|.+..++.+.+.+...... ...-++.+.++|++|+|||++|+.+++. +-..... ..+|+... .-
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~--l~c~~~~--~~~Cg~C~----~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA--LQCTDPD--EPGCGECR----AC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCCCC--CCCCCCCH----HH
Confidence 46889999999999999864310 0013678999999999999999999862 2111100 00011000 00
Q ss_pred HHHHHHhcC------CCCCCCcHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEec
Q 042791 87 KAIIEGLGE------SASGLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTR 155 (761)
Q Consensus 87 ~~i~~~l~~------~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr 155 (761)
+.+...-.+ ........+++. .+.+.. .+++-++|||+++.......+.++..+.....+..+|++|.
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAP 155 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEEC
Confidence 000000000 000011122211 122211 24556888999988777777778888877655666666665
Q ss_pred c-hhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 156 N-ESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 156 ~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
+ ..+.+.+ .....+.+.+++.+++.+.+..... ...+.+..++..++|.|.....+
T Consensus 156 ~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---------~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 156 SPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---------VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred ChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5 4444332 3467899999999999998875321 11345778899999999655444
No 60
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.81 E-value=6.2e-08 Score=104.55 Aligned_cols=184 Identities=13% Similarity=0.150 Sum_probs=116.5
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-------------------
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN------------------- 67 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~------------------- 67 (761)
|..-+++||.+..++.|..++...+ -++.+.++|+.|+||||+|+.+++. +...
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~--LnC~~~~~~~pCg~C~sCr~i~~ 84 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKS--LNCENAQHGEPCGVCQSCTQIDA 84 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHH--hcccCCCCCCCCcccHHHHHHhc
Confidence 4455679999999999999997533 3577899999999999999999873 2111
Q ss_pred --CCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-hCCceEEEEEeCCCCCCccCchhHHHhhcCC
Q 042791 68 --FEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG 144 (761)
Q Consensus 68 --f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~ 144 (761)
|..++.+........ ....++++..... ..+++-++|||+++..+...+..++..+...
T Consensus 85 g~~~DvlEidaAs~~gV------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP 146 (709)
T PRK08691 85 GRYVDLLEIDAASNTGI------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP 146 (709)
T ss_pred cCccceEEEeccccCCH------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC
Confidence 111111111111111 1112222211111 1245679999999776655667777777765
Q ss_pred CCCcEEEEEecch-hhhhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHH
Q 042791 145 LHGSKILVTTRNE-SVARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKV 219 (761)
Q Consensus 145 ~~~~~iiiTtr~~-~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 219 (761)
...+++|++|.+. .+... .+....+.+.+++.++..+.+.+.+..... ....+.+..|++.++|.+.-+..
T Consensus 147 p~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi----~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 147 PEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI----AYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred CCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHhCCCHHHHHH
Confidence 5566777777653 23222 233567889999999999999987753321 23345678999999998854433
No 61
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=1.3e-07 Score=94.75 Aligned_cols=212 Identities=15% Similarity=0.097 Sum_probs=136.1
Q ss_pred CCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHH
Q 042791 9 DEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKA 88 (761)
Q Consensus 9 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~ 88 (761)
.++.++||+.++..+.+++...-+ ....+.+.|.|.+|.|||.+...++.+......-..++++.+..-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 456799999999999999887665 567889999999999999999999985322222234688888887788888888
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHhCC--ceEEEEEeCCCCCCccCchhHHHhhcCC-CCCcEEEEEecc------hhh
Q 042791 89 IIEGLGESASGLNEFQSLMSRIQSSIKG--KKNFLVLDDVWDGDYNKWQPFFRCLKNG-LHGSKILVTTRN------ESV 159 (761)
Q Consensus 89 i~~~l~~~~~~~~~~~~~~~~~~~~l~~--~~~LlvlDd~~~~~~~~~~~l~~~~~~~-~~~~~iiiTtr~------~~~ 159 (761)
|...+...........+..+.+...... ..+|+|+|++|.-.....+.+...+.|. .+++|+|+..-- +..
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 8888733322222334555556555543 3689999999875556666676666663 356666554321 112
Q ss_pred hhhcCC-----CCeeecCCCChHHHHHHHHHHhhCCCCCCCC-CchhHHHHHHHHhcCCCchhHHHHHH
Q 042791 160 ARMMGS-----TDSISIKQLAEEECWSLFKQLAFFGCSFEDC-EKLEPIGRKIACKCKGLPLAAKVIGN 222 (761)
Q Consensus 160 ~~~~~~-----~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plal~~~~~ 222 (761)
...+.. ...+..+|.+.++..+++..+.......... ....-.|++++...|.+--|+.+.-+
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ 374 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRR 374 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 221111 3467889999999999999887432221111 12222334444444444455544443
No 62
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.81 E-value=1.8e-07 Score=99.43 Aligned_cols=201 Identities=16% Similarity=0.185 Sum_probs=117.9
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCC---eeEEEEecCCCCH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFE---KVIWVCVSNTFDQ 82 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~---~~~~v~~~~~~~~ 82 (761)
+|..-+++||.+..++.+...+...+ -++.+.++|++|+||||+|+.+++. +..... ...+..+....+-
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~--Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKA--VNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHH--hcCccccccCcCcCCCCCChHH
Confidence 44556678999999999988876432 3578899999999999999999973 321100 0001111111000
Q ss_pred HHHHHHH---HHHhcC-CCCCCCcHHHHHHHHHH-HhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEe-cc
Q 042791 83 IRIAKAI---IEGLGE-SASGLNEFQSLMSRIQS-SIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT-RN 156 (761)
Q Consensus 83 ~~~~~~i---~~~l~~-~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTt-r~ 156 (761)
..+.... ...+.. ......+..++++.... -..+++-++|+|+++.-+...++.+...+......+++|++| +.
T Consensus 89 ~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~ 168 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEV 168 (507)
T ss_pred HHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCCh
Confidence 0000000 000000 00111122222222211 123567789999998876777888888877655566665544 44
Q ss_pred hhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhH
Q 042791 157 ESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAA 217 (761)
Q Consensus 157 ~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 217 (761)
..+...+ .....+++.+++.++..+.+...+..... ....+.+..|++.++|.+..+
T Consensus 169 ~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi----~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 169 QKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL----KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 4554433 23567999999999999999988754321 223455788999999977443
No 63
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.80 E-value=1.2e-07 Score=92.12 Aligned_cols=178 Identities=15% Similarity=0.092 Sum_probs=105.4
Q ss_pred CCCCCcee-cccchH-HHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHH
Q 042791 7 LIDEGEVC-GRVDEK-NELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIR 84 (761)
Q Consensus 7 ~~~~~~~v-gr~~~~-~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (761)
+..-++|+ |...+. ..+.++... ....+.++|+|++|+|||+||+++++ .....-..+.++++.....
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~G~~G~GKT~La~ai~~--~~~~~~~~~~~i~~~~~~~--- 83 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAG-----PVADRFFYLWGEAGSGRSHLLQALVA--DASYGGRNARYLDAASPLL--- 83 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhc-----cCCCCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEEehHHhHH---
Confidence 34455666 444443 334443331 12346789999999999999999998 3333334566665544210
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCC-CCCc-EEEEEecchhhhh-
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG-LHGS-KILVTTRNESVAR- 161 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~-~~~~-~iiiTtr~~~~~~- 161 (761)
.+ .. ....-++|+||++..+......+...+... ..+. .+|+|++......
T Consensus 84 ---~~----------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~ 137 (227)
T PRK08903 84 ---AF----------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALP 137 (227)
T ss_pred ---HH----------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCC
Confidence 00 00 112347899999764444444555555431 1233 4666666432111
Q ss_pred -------hcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHHh
Q 042791 162 -------MMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL 224 (761)
Q Consensus 162 -------~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 224 (761)
.+.....+++.++++++..+++.+.+.... ....++..+.+++.+.|++..+..+...+
T Consensus 138 l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~----v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 138 LREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG----LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 122236889999999988888877543222 12345678889999999998887776655
No 64
>PTZ00202 tuzin; Provisional
Probab=98.79 E-value=4.9e-07 Score=90.92 Aligned_cols=171 Identities=11% Similarity=0.114 Sum_probs=104.4
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHH
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIR 84 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (761)
..|.+..+|+||+.+++.+...|...+ .+.++++.|.|++|+|||||++.+... .. ...++.... +..+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d---~~~privvLtG~~G~GKTTLlR~~~~~--l~----~~qL~vNpr--g~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLD---TAHPRIVVFTGFRGCGKSSLCRSAVRK--EG----MPAVFVDVR--GTED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccC---CCCceEEEEECCCCCCHHHHHHHHHhc--CC----ceEEEECCC--CHHH
Confidence 456678899999999999999997554 334679999999999999999999963 22 223332222 6799
Q ss_pred HHHHHHHHhcCCCCCC--CcHHHHHHHHHHHh--CCceEEEEEeCCCCCC-ccCchhHHHhhcCCCCCcEEEEEecchhh
Q 042791 85 IAKAIIEGLGESASGL--NEFQSLMSRIQSSI--KGKKNFLVLDDVWDGD-YNKWQPFFRCLKNGLHGSKILVTTRNESV 159 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~-~~~~~~l~~~~~~~~~~~~iiiTtr~~~~ 159 (761)
+++.++..++...... .-...+.+.+.+.- ++++.+||+-==+-.+ ..-+..... +.-...-|.|++----+.+
T Consensus 325 lLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~-la~drr~ch~v~evplesl 403 (550)
T PTZ00202 325 TLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVA-LACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHH-HHccchhheeeeeehHhhc
Confidence 9999999999632221 12233333333322 2667777774211010 011111111 1112224556665444433
Q ss_pred hhh---cCCCCeeecCCCChHHHHHHHHHHh
Q 042791 160 ARM---MGSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 160 ~~~---~~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
-.. +..-..|-++.|+.++|.++-.+..
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 211 1223478999999999999987754
No 65
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.79 E-value=1.8e-07 Score=96.59 Aligned_cols=184 Identities=15% Similarity=0.078 Sum_probs=110.8
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEe--cCCCCHHH
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV--SNTFDQIR 84 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~--~~~~~~~~ 84 (761)
|..-++++|+++.++.+..++... ..+.+.++|++|+||||+|+.+++ ..........++.+ +.......
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~--~l~~~~~~~~~i~~~~~~~~~~~~ 84 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALAR--ELYGEDWRENFLELNASDERGIDV 84 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHH--HHcCCccccceEEeccccccchHH
Confidence 344567999999999999998643 234579999999999999999997 33222111122222 22111111
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc-hhhhhhc
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVARMM 163 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~-~~~~~~~ 163 (761)
+...+ ..+....+ .....+-++++|+++.........+...+......+++|+++.. ..+.+..
T Consensus 85 ~~~~i-~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l 149 (319)
T PRK00440 85 IRNKI-KEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPI 149 (319)
T ss_pred HHHHH-HHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhH
Confidence 11111 11110000 00134568999999765444455666666655555677777643 2222211
Q ss_pred -CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhH
Q 042791 164 -GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAA 217 (761)
Q Consensus 164 -~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 217 (761)
.....+++.+++.++...++...+..... ....+.+..+++.++|.+.-+
T Consensus 150 ~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~----~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 150 QSRCAVFRFSPLKKEAVAERLRYIAENEGI----EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HHHhheeeeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 22346899999999999999987754322 233556888999999987653
No 66
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=3.7e-08 Score=100.94 Aligned_cols=198 Identities=14% Similarity=0.085 Sum_probs=122.2
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-CCeeE----EEE---e
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVI----WVC---V 76 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f~~~~----~v~---~ 76 (761)
.+|....+++|.++..+.+.+.+...+ -++...++|+.|+||+|+|.++++.. ++.. ..... -.+ +
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~L-lc~~~~~~~~~~~~~~~l~~~ 86 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFL-LATPPPGGDGAVPPPTSLAID 86 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHH-hCCCCCCCCccccccccccCC
Confidence 456667789999999999999987543 36789999999999999999998731 1111 10000 000 0
Q ss_pred cCCCCHHHHHHHHHHHhcCC---------C-----CCCCcHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccCchhH
Q 042791 77 SNTFDQIRIAKAIIEGLGES---------A-----SGLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPF 137 (761)
Q Consensus 77 ~~~~~~~~~~~~i~~~l~~~---------~-----~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l 137 (761)
... ...+.+...-... . ......++ +..+.+.+ .+.+.++|||+++..+......+
T Consensus 87 ~~c----~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaL 161 (365)
T PRK07471 87 PDH----PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANAL 161 (365)
T ss_pred CCC----hHHHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHH
Confidence 000 1111111111000 0 01122333 23333333 25567999999988888888888
Q ss_pred HHhhcCCCCCcEEEEEecch-hhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCch
Q 042791 138 FRCLKNGLHGSKILVTTRNE-SVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPL 215 (761)
Q Consensus 138 ~~~~~~~~~~~~iiiTtr~~-~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 215 (761)
+..+..-..++.+|++|... .+...+ .....+.+.+++.+++.+.+...... ...+....+++.++|.|.
T Consensus 162 LK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~--------~~~~~~~~l~~~s~Gsp~ 233 (365)
T PRK07471 162 LKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD--------LPDDPRAALAALAEGSVG 233 (365)
T ss_pred HHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc--------CCHHHHHHHHHHcCCCHH
Confidence 88888765566667666654 343332 34678999999999999999886411 111223678999999998
Q ss_pred hHHHHH
Q 042791 216 AAKVIG 221 (761)
Q Consensus 216 al~~~~ 221 (761)
....+.
T Consensus 234 ~Al~ll 239 (365)
T PRK07471 234 RALRLA 239 (365)
T ss_pred HHHHHh
Confidence 655543
No 67
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.79 E-value=1e-07 Score=103.55 Aligned_cols=199 Identities=15% Similarity=0.167 Sum_probs=121.9
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (761)
+|..-+++||.+..++.|.+.+...+ -++.+.++|+.|+||||+|+.+++. +..... .....|+.. ..
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~--L~c~~~-~~~~pCg~C----~~ 78 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKG--LNCETG-ITATPCGEC----DN 78 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHh--hhhccC-CCCCCCCCC----HH
Confidence 34556779999999999999987432 3466789999999999999999983 322110 000011111 11
Q ss_pred HHHHHHH-------hcCC-CCCCCcHHHHHHHHHHH-hCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc
Q 042791 86 AKAIIEG-------LGES-ASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN 156 (761)
Q Consensus 86 ~~~i~~~-------l~~~-~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~ 156 (761)
.+.|... +... .....+..++++.+... ..+++-++|||+++..+...++.++..+.......++|++|.+
T Consensus 79 C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~ 158 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (647)
T ss_pred HHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCC
Confidence 1111100 0000 01111222222222211 2456679999999988888888898888876656676666655
Q ss_pred -hhhhhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 157 -ESVARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 157 -~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
..+... ...+..+.+.+++.++..+++.+.+..... ....+....|++.++|.+.....+
T Consensus 159 ~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 159 PQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred ccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 444332 234678999999999999999886632211 223455788999999988644333
No 68
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.78 E-value=5.4e-10 Score=113.55 Aligned_cols=89 Identities=31% Similarity=0.481 Sum_probs=44.2
Q ss_pred ccccchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCC
Q 042791 451 EIPENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKL 530 (761)
Q Consensus 451 ~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l 530 (761)
.+|..++.+..|.+|+|+.|+++.+|..++.| -|+.|-+++|+ ++.+|..++.+..|.+|+.+.|. +..+|..++.+
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l 188 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYL 188 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCc-cccCCcccccchhHHHhhhhhhh-hhhchHHhhhH
Confidence 45555555555555555555555555555443 25555555544 44555555555555555555552 23344444444
Q ss_pred CCCcccCceeec
Q 042791 531 TNLRTLDRFVVG 542 (761)
Q Consensus 531 ~~L~~L~l~~~~ 542 (761)
.+|+.|.+..|.
T Consensus 189 ~slr~l~vrRn~ 200 (722)
T KOG0532|consen 189 TSLRDLNVRRNH 200 (722)
T ss_pred HHHHHHHHhhhh
Confidence 444444444333
No 69
>PRK04195 replication factor C large subunit; Provisional
Probab=98.77 E-value=1.6e-07 Score=101.52 Aligned_cols=186 Identities=18% Similarity=0.151 Sum_probs=114.9
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (761)
.|..-++++|+++..+.+..|+..... +...+.+.|+|++|+||||+|++++++ . .+. ++.+++++..+...
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~e--l--~~~-~ielnasd~r~~~~- 80 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALAND--Y--GWE-VIELNASDQRTADV- 80 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH--c--CCC-EEEEcccccccHHH-
Confidence 345566799999999999999976542 223678999999999999999999983 3 222 34444444333322
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCc----cCchhHHHhhcCCCCCcEEEEEecch-hhh
Q 042791 86 AKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDY----NKWQPFFRCLKNGLHGSKILVTTRNE-SVA 160 (761)
Q Consensus 86 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~----~~~~~l~~~~~~~~~~~~iiiTtr~~-~~~ 160 (761)
...++....... .....++-+||||+++.... ..+..+...+... +..||+|+.+. ...
T Consensus 81 i~~~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~ 144 (482)
T PRK04195 81 IERVAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPS 144 (482)
T ss_pred HHHHHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccc
Confidence 222222211110 00113577999999976322 2345555555432 33466666442 111
Q ss_pred h-h-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHH
Q 042791 161 R-M-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKV 219 (761)
Q Consensus 161 ~-~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 219 (761)
. . ......+++.+++.++....+...+..... ....+....|++.++|....+..
T Consensus 145 ~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi----~i~~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 145 LRELRNACLMIEFKRLSTRSIVPVLKRICRKEGI----ECDDEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred hhhHhccceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 1 1 123567999999999999999887754322 12356688999999997755543
No 70
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.76 E-value=3.5e-07 Score=95.86 Aligned_cols=186 Identities=13% Similarity=0.112 Sum_probs=115.9
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc----C--------------
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN----F-------------- 68 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~----f-------------- 68 (761)
|..-++++|.+..++.+.+++... .-++.+.++|++|+||||+|+.+++. +... +
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~--l~~~~~~~~~~c~~c~~c~~~~~ 82 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKA--LNCQNGPDGEPCNECESCKEINS 82 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCCCCCCCHHHHHHhc
Confidence 455567899999999999988643 23567889999999999999999872 2211 0
Q ss_pred ---CeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-hCCceEEEEEeCCCCCCccCchhHHHhhcCC
Q 042791 69 ---EKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG 144 (761)
Q Consensus 69 ---~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~ 144 (761)
..++++.......... ..++.+.+... ..+++-++|+|+++......++.+...+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~------------------~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~ 144 (355)
T TIGR02397 83 GSSLDVIEIDAASNNGVDD------------------IREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP 144 (355)
T ss_pred CCCCCEEEeeccccCCHHH------------------HHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC
Confidence 1122222211111111 11122211111 1245568999999765555667777777665
Q ss_pred CCCcEEEEEecch-hhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHH
Q 042791 145 LHGSKILVTTRNE-SVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIG 221 (761)
Q Consensus 145 ~~~~~iiiTtr~~-~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 221 (761)
...+.+|++|.+. .+.+.+ .....+++.++++++..+++...+...+. ....+.+..+++.++|.|..+....
T Consensus 145 ~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~----~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 145 PEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI----KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred ccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 5556666666543 233322 23457899999999999999987743321 2234667889999999986655443
No 71
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=2e-07 Score=99.63 Aligned_cols=200 Identities=15% Similarity=0.174 Sum_probs=116.5
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (761)
+|..-++++|++..++.+.+++.... -++.+.++|++|+||||+|+.+++ .+...- |.... ....-..
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk--~L~C~~----~~~~~-~Cg~C~s 78 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAK--AINCLN----PKDGD-CCNSCSV 78 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHH--HhcCCC----CCCCC-CCcccHH
Confidence 45566789999999999999986432 357889999999999999999987 321110 11000 0000011
Q ss_pred HHHHHHHhc-------CCC-CCCCcHHHHHHHHHHH-hCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc
Q 042791 86 AKAIIEGLG-------ESA-SGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN 156 (761)
Q Consensus 86 ~~~i~~~l~-------~~~-~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~ 156 (761)
.+.+..... ... ....+..++.+.+... ..+++-++|+|+++......+..++..+......+.+|++|..
T Consensus 79 Cr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~ 158 (605)
T PRK05896 79 CESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTE 158 (605)
T ss_pred HHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCC
Confidence 111111000 000 0111112222222111 1234457999999876666677788877765555656555543
Q ss_pred -hhhhhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCch-hHHHHH
Q 042791 157 -ESVARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPL-AAKVIG 221 (761)
Q Consensus 157 -~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 221 (761)
..+... ......+++.+++.++....+...+...+. ....+.+..+++.++|.+. |+..+-
T Consensus 159 ~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi----~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 159 FQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI----KIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 444332 234568999999999999999887643221 1234567889999999664 444443
No 72
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=2.4e-07 Score=100.50 Aligned_cols=198 Identities=14% Similarity=0.142 Sum_probs=117.3
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc--C--CeeEEEEecCCCCH
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN--F--EKVIWVCVSNTFDQ 82 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~--f--~~~~~v~~~~~~~~ 82 (761)
|-.-+++||.+..++.|.+++...+ -++.+.++|+.|+||||+|+.+++. +... . .+...-.|+..
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~--LnC~~~~~~~~~~~~pCg~C--- 81 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKS--LNCQGPDGQGGITATPCGVC--- 81 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCcccccCCCCCCCCcc---
Confidence 4556779999999999999987543 3577799999999999999999862 2110 0 11000111111
Q ss_pred HHHHHHHHHHh-----cCCCCCCCcHHHHHHHHHHH----hCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEE
Q 042791 83 IRIAKAIIEGL-----GESASGLNEFQSLMSRIQSS----IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVT 153 (761)
Q Consensus 83 ~~~~~~i~~~l-----~~~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiT 153 (761)
...+.|...- ..........+++.+.+... ..++.-++|||+++..+...++.++..+.......++|++
T Consensus 82 -~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~ 160 (618)
T PRK14951 82 -QACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160 (618)
T ss_pred -HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEE
Confidence 0011110000 00000001122222211111 1234558999999887777888888887775556667666
Q ss_pred ecc-hhhhhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHH
Q 042791 154 TRN-ESVARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKV 219 (761)
Q Consensus 154 tr~-~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 219 (761)
|.+ ..+... ......+++++++.++..+.+.+.+...+. ....+....|++.++|.+..+..
T Consensus 161 Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi----~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV----PAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred ECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 654 333322 234678999999999999999887643322 22345678899999997754433
No 73
>PRK08727 hypothetical protein; Validated
Probab=98.75 E-value=3e-07 Score=88.92 Aligned_cols=148 Identities=14% Similarity=0.096 Sum_probs=90.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCce
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKK 118 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (761)
..++|+|++|+|||.|+.++++ ........+.|+++.. ....+. .. + +.+ ...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~~~------~~~~~~--------------~~---~-~~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPLQA------AAGRLR--------------DA---L-EAL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeHHH------hhhhHH--------------HH---H-HHH-hcC
Confidence 4699999999999999999988 4444445677886432 111111 11 1 111 123
Q ss_pred EEEEEeCCCCCC--ccCchhHHHhhcCC-CCCcEEEEEecch---------hhhhhcCCCCeeecCCCChHHHHHHHHHH
Q 042791 119 NFLVLDDVWDGD--YNKWQPFFRCLKNG-LHGSKILVTTRNE---------SVARMMGSTDSISIKQLAEEECWSLFKQL 186 (761)
Q Consensus 119 ~LlvlDd~~~~~--~~~~~~l~~~~~~~-~~~~~iiiTtr~~---------~~~~~~~~~~~~~l~~l~~~ea~~l~~~~ 186 (761)
-++|+||++... ......+...+... ..+..+|+|++.. .+...+.....+++++++.++..+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 489999996532 11112233332221 2355699998852 12222333568999999999999999987
Q ss_pred hhCCCCCCCCCchhHHHHHHHHhcCCCchhH
Q 042791 187 AFFGCSFEDCEKLEPIGRKIACKCKGLPLAA 217 (761)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 217 (761)
+.... ....++....|++.+.|-.-.+
T Consensus 175 a~~~~----l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRG----LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcC----CCCCHHHHHHHHHhCCCCHHHH
Confidence 75421 2344566788888888755444
No 74
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.75 E-value=3.3e-07 Score=85.89 Aligned_cols=90 Identities=10% Similarity=0.144 Sum_probs=65.7
Q ss_pred CceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecch-hhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCC
Q 042791 116 GKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSF 193 (761)
Q Consensus 116 ~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~-~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 193 (761)
+.+-++|+||++......++.++..+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g------ 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG------ 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC------
Confidence 566799999998766666778888887755566677766653 333322 234689999999999999998861
Q ss_pred CCCCchhHHHHHHHHhcCCCch
Q 042791 194 EDCEKLEPIGRKIACKCKGLPL 215 (761)
Q Consensus 194 ~~~~~~~~~~~~i~~~~~g~Pl 215 (761)
...+.+..+++.++|.|.
T Consensus 169 ----i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 ----ISEEAAELLLALAGGSPG 186 (188)
T ss_pred ----CCHHHHHHHHHHcCCCcc
Confidence 124568899999999885
No 75
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.74 E-value=6e-08 Score=107.73 Aligned_cols=176 Identities=18% Similarity=0.230 Sum_probs=103.5
Q ss_pred CCCCCceecccchHH---HHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHH
Q 042791 7 LIDEGEVCGRVDEKN---ELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQI 83 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~---~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (761)
|..-++|+|++..+. .+.+.+.. +....+.++|++|+||||+|+.+++ .....|. .+.+.. ....
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~~-~~i~ 91 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAVL-AGVK 91 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHH--HhcCcce---eehhhh-hhhH
Confidence 444566899888774 45566653 3355788999999999999999997 4443331 111110 0011
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh--CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEec--ch--
Q 042791 84 RIAKAIIEGLGESASGLNEFQSLMSRIQSSI--KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTR--NE-- 157 (761)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr--~~-- 157 (761)
+..+......+.+ .+++.++||||++......++.++..+.. +..++|+++ +.
T Consensus 92 ------------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~---g~IiLI~aTTenp~~ 150 (725)
T PRK13341 92 ------------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN---GTITLIGATTENPYF 150 (725)
T ss_pred ------------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC---ceEEEEEecCCChHh
Confidence 1112222222222 24567999999987666666666655543 444555433 32
Q ss_pred hhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCC---CCCCCchhHHHHHHHHhcCCCch
Q 042791 158 SVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCS---FEDCEKLEPIGRKIACKCKGLPL 215 (761)
Q Consensus 158 ~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~g~Pl 215 (761)
.+...+ .....+++++++.++...++.+.+..... .......++....|++.+.|.-.
T Consensus 151 ~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 151 EVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 122211 23457999999999999999887641100 01112345567888898988654
No 76
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=1.9e-07 Score=100.22 Aligned_cols=184 Identities=15% Similarity=0.122 Sum_probs=117.2
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhh-------------------cc
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVK-------------------RN 67 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~-------------------~~ 67 (761)
|-.-+++||.+..++.+..++.... -++...++|++|+||||+|+.+++..... +.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~ 86 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGR 86 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCC
Confidence 4456779999999999999997533 35677899999999999999999731110 01
Q ss_pred CCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-hCCceEEEEEeCCCCCCccCchhHHHhhcCCCC
Q 042791 68 FEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLH 146 (761)
Q Consensus 68 f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~ 146 (761)
+.-++.+........+++ +.+. +.+... ..++.-++|||+++..+...++.++..+.....
T Consensus 87 ~~d~~eidaas~~~v~~i-R~l~-----------------~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~ 148 (509)
T PRK14958 87 FPDLFEVDAASRTKVEDT-RELL-----------------DNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPS 148 (509)
T ss_pred CceEEEEcccccCCHHHH-HHHH-----------------HHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCC
Confidence 111223322222222221 1121 111111 124556899999988777778888888877666
Q ss_pred CcEEEEEecc-hhhhhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhH
Q 042791 147 GSKILVTTRN-ESVARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAA 217 (761)
Q Consensus 147 ~~~iiiTtr~-~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 217 (761)
.+++|++|.+ ..+... ......+++++++.++..+.+...+...+. ....+....|++.++|.+..+
T Consensus 149 ~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi----~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 149 HVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV----EFENAALDLLARAANGSVRDA 217 (509)
T ss_pred CeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHH
Confidence 6777766654 333322 233567899999999999888877643221 223455778899999987544
No 77
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=3.1e-07 Score=93.61 Aligned_cols=178 Identities=15% Similarity=0.192 Sum_probs=116.5
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhh------ccCCeeEEEE-ecCCCCHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVK------RNFEKVIWVC-VSNTFDQI 83 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~------~~f~~~~~v~-~~~~~~~~ 83 (761)
++++|.+...+.+.+.+... .-+++..++|+.|+||||+|+++++ .+- .+.|...|.. .+.....+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~--~l~c~~~~~~h~D~~~~~~~~~~~i~v~ 76 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIAL--KILGKSQQREYVDIIEFKPINKKSIGVD 76 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHH--HHcCCCCCCCCCCeEEeccccCCCCCHH
Confidence 56889999999999998643 2367889999999999999999997 321 1223333332 11222222
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchh-hhhh
Q 042791 84 RIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNES-VARM 162 (761)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~-~~~~ 162 (761)
.+ +++.+.+.. ....+++-++|+|+++..+...++.++..+..-..++.+|++|.+.+ +.+.
T Consensus 77 ~i-r~~~~~~~~----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~T 139 (313)
T PRK05564 77 DI-RNIIEEVNK----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDT 139 (313)
T ss_pred HH-HHHHHHHhc----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 21 122222211 01235667888898877777788899999988777888888876543 3332
Q ss_pred -cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 163 -MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 163 -~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
......+++.++++++....+.+... ....+.++.++..++|.|.-+...
T Consensus 140 I~SRc~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 140 IKSRCQIYKLNRLSKEEIEKFISYKYN--------DIKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HHhhceeeeCCCcCHHHHHHHHHHHhc--------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 23356899999999999988876541 112344677889999988655433
No 78
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.73 E-value=9.3e-08 Score=86.30 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=73.5
Q ss_pred ecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHh
Q 042791 14 CGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGL 93 (761)
Q Consensus 14 vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l 93 (761)
+||+..++.+...+... ..+.+.|+|++|+|||++++++++ ........++++.+............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIAN--ELFRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHH--HhhcCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888899998888643 346889999999999999999998 343333456677665543322221111100
Q ss_pred cCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCC------CCCcEEEEEecch
Q 042791 94 GESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG------LHGSKILVTTRNE 157 (761)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~------~~~~~iiiTtr~~ 157 (761)
............++.++|+||++.........+...+... ..+.++|+|+...
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011111222456789999999753222333344433332 2466788887764
No 79
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=2.2e-07 Score=97.59 Aligned_cols=197 Identities=14% Similarity=0.149 Sum_probs=117.4
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc--CCeeEEE-----EecC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWV-----CVSN 78 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~--f~~~~~v-----~~~~ 78 (761)
+|..-++++|.+...+.+..++...+ -++.+.++|++|+||||+|+.+++ .+... +....|. .++.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~--~l~c~~~~~~~~~~~~~~~~c~~ 83 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAK--AVNCQRMIDDADYLQEVTEPCGE 83 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHH--HhcCCCCcCcccccccCCCCCCC
Confidence 45566789999999999999887432 356788999999999999999997 33221 1100010 1111
Q ss_pred CCCHHHHHHHHHHHhcC-----CCCCCCcHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCc
Q 042791 79 TFDQIRIAKAIIEGLGE-----SASGLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGS 148 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~ 148 (761)
.. ..+.+...... ........+++.+ +.+.+ .+++-++|+|+++......++.+...+....+.+
T Consensus 84 c~----~c~~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t 158 (397)
T PRK14955 84 CE----SCRDFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHA 158 (397)
T ss_pred CH----HHHHHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCe
Confidence 10 00001000000 0000111222222 22222 3456789999997766667778888887765566
Q ss_pred EEEEEe-cchhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHH
Q 042791 149 KILVTT-RNESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAK 218 (761)
Q Consensus 149 ~iiiTt-r~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 218 (761)
.+|+++ +...+...+ .....+++.++++++..+.+...+..... ....+.+..+++.++|.+.-+.
T Consensus 159 ~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 159 IFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred EEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 666555 434444332 12357899999999999999887643211 2345668899999999885443
No 80
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=5e-09 Score=103.41 Aligned_cols=179 Identities=17% Similarity=0.127 Sum_probs=126.5
Q ss_pred CCceEEEEEeecCCCCCcc--cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPM--SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIK 450 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 450 (761)
..+++.+++........+. -...|++++.|+|+.|-+.+.. ...++...+|+|+.|+++.|.+.... ....
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~----~v~~i~eqLp~Le~LNls~Nrl~~~~---~s~~ 192 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF----PVLKIAEQLPSLENLNLSSNRLSNFI---SSNT 192 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH----HHHHHHHhcccchhcccccccccCCc---cccc
Confidence 4567777777776665553 5678999999999998654322 23455788999999999988875421 1111
Q ss_pred ccccchhcccccCccccCCcCCc--cCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCcccccccc--cc
Q 042791 451 EIPENVGKLIHLKYLNLSELGIE--RLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMP--IG 526 (761)
Q Consensus 451 ~lp~~~~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p--~~ 526 (761)
-..+++|+.|.++.|+++ .+......+++|+.|+|.+|............+..|++|+|++|+.+. ++ ..
T Consensus 193 -----~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~ 266 (505)
T KOG3207|consen 193 -----TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYK 266 (505)
T ss_pred -----hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccc
Confidence 125788999999999988 444556788999999999986343333334567889999999996544 33 34
Q ss_pred CCCCCCCcccCceeecCccCCC-------CccCcccccCccCCce
Q 042791 527 ISKLTNLRTLDRFVVGGGVDGS-------NTCRLESLKNLQLRGK 564 (761)
Q Consensus 527 l~~l~~L~~L~l~~~~~~~~~~-------~~~~l~~L~~L~l~~~ 564 (761)
++.++.|..|+++.++..++.. ....+++|+.|++..+
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence 7788999999988887554431 1235778899988754
No 81
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=9.9e-09 Score=92.52 Aligned_cols=127 Identities=27% Similarity=0.276 Sum_probs=44.4
Q ss_pred cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcC
Q 042791 392 SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELG 471 (761)
Q Consensus 392 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~ 471 (761)
.+-++.+++.|+|.++.+.. .+.+-..+.+|++|+|++|.+. .++ .+..+++|+.|++++|.
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~-------Ie~L~~~l~~L~~L~Ls~N~I~----------~l~-~l~~L~~L~~L~L~~N~ 75 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQIST-------IENLGATLDKLEVLDLSNNQIT----------KLE-GLPGLPRLKTLDLSNNR 75 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S------------T-T----TT--EEE--SS-
T ss_pred cccccccccccccccccccc-------ccchhhhhcCCCEEECCCCCCc----------ccc-CccChhhhhhcccCCCC
Confidence 34456677888888887632 1221125678888888866554 343 36678888899999998
Q ss_pred CccCchhh-hccCCCcEEecCCccCccccc--ccccccccccEeecCCccccccccc----cCCCCCCCcccCc
Q 042791 472 IERLPETL-CELYNLQKLDIRRCRNLRELP--AGIGKLMNMRTLLNGETYALKYMPI----GISKLTNLRTLDR 538 (761)
Q Consensus 472 i~~lp~~~-~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~l 538 (761)
|+.++..+ ..+++|++|++++|+. ..+- ..+..+++|+.|++.+|+.... +. -+..+++|+.||.
T Consensus 76 I~~i~~~l~~~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 76 ISSISEGLDKNLPNLQELYLSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred CCccccchHHhCCcCCEEECcCCcC-CChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 88887655 4688899999988873 3222 3356788888888888865432 11 1445666666663
No 82
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.70 E-value=6.4e-07 Score=86.74 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=92.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGK 117 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 117 (761)
.+.++|+|++|+|||+|++++++ ........+.|+++...... ..+..+.+ . +
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~~~~~~~--------------------~~~~~~~~----~-~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPLDKRAWF--------------------VPEVLEGM----E-Q 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEHHHHhhh--------------------hHHHHHHh----h-h
Confidence 45789999999999999999998 44444455677766431100 01111111 1 1
Q ss_pred eEEEEEeCCCCCCc-cCch-hHHHhhcCC-CCC-cEEEEEecchh---------hhhhcCCCCeeecCCCChHHHHHHHH
Q 042791 118 KNFLVLDDVWDGDY-NKWQ-PFFRCLKNG-LHG-SKILVTTRNES---------VARMMGSTDSISIKQLAEEECWSLFK 184 (761)
Q Consensus 118 ~~LlvlDd~~~~~~-~~~~-~l~~~~~~~-~~~-~~iiiTtr~~~---------~~~~~~~~~~~~l~~l~~~ea~~l~~ 184 (761)
.-++++||++.... ..|+ .+...+... ..| .++|+||+... +..-+.....++++++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 23789999965321 1222 222222221 123 36899988532 22223344689999999999999998
Q ss_pred HHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHH
Q 042791 185 QLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGN 222 (761)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 222 (761)
+.+.... ....+++...|++.+.|..-.+..+-.
T Consensus 178 ~~a~~~~----~~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 178 LRARLRG----FELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHHHcC----CCCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 8664321 234566788888888877655544433
No 83
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.69 E-value=2.3e-10 Score=116.14 Aligned_cols=153 Identities=24% Similarity=0.345 Sum_probs=100.4
Q ss_pred EEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchh
Q 042791 378 HLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVG 457 (761)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~ 457 (761)
.+.+..+.+..+|+++..+..|.+|+|+.|.++ .++.. + +.--|++|.++ ++.++.+|..++
T Consensus 102 ~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS------~lp~~-l-C~lpLkvli~s----------NNkl~~lp~~ig 163 (722)
T KOG0532|consen 102 SLILYHNCIRTIPEAICNLEALTFLDLSSNQLS------HLPDG-L-CDLPLKVLIVS----------NNKLTSLPEEIG 163 (722)
T ss_pred HHHHHhccceecchhhhhhhHHHHhhhccchhh------cCChh-h-hcCcceeEEEe----------cCccccCCcccc
Confidence 334444555556666666666666666665532 12222 1 22346666666 344456777777
Q ss_pred cccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcccC
Q 042791 458 KLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLD 537 (761)
Q Consensus 458 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 537 (761)
....|..|+.+.|.+..+|+.++.+..|+.|.++.|+ +..+|..+. .-.|..||+++| .+..+|-.+.+|..|++|-
T Consensus 164 ~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~-~LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELC-SLPLIRLDFSCN-KISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHh-CCceeeeecccC-ceeecchhhhhhhhheeee
Confidence 7777888888888887888888888888888888777 556776666 445777888777 4567777788888888888
Q ss_pred ceeecCccCCCCcc
Q 042791 538 RFVVGGGVDGSNTC 551 (761)
Q Consensus 538 l~~~~~~~~~~~~~ 551 (761)
+.+|.....|..++
T Consensus 241 LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 241 LENNPLQSPPAQIC 254 (722)
T ss_pred eccCCCCCChHHHH
Confidence 77777666665444
No 84
>PF13173 AAA_14: AAA domain
Probab=98.68 E-value=9.9e-08 Score=82.90 Aligned_cols=119 Identities=22% Similarity=0.335 Sum_probs=77.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCce
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKK 118 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (761)
++++|.|+.|+||||++++++++ .. .-..++|+++.+......... + ..+.+.+...+++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~--~~-~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKD--LL-PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--hc-ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccCC
Confidence 68999999999999999999973 22 335577776655422111000 0 1222333333477
Q ss_pred EEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchhhhhh-----c-CCCCeeecCCCChHHH
Q 042791 119 NFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVARM-----M-GSTDSISIKQLAEEEC 179 (761)
Q Consensus 119 ~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~~-----~-~~~~~~~l~~l~~~ea 179 (761)
.+++||+++.. ..|......+.+..+..+|++|+........ + +....++|.||+-.|-
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 89999999653 5677766666665556789999887554422 1 2245789999998763
No 85
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=3.9e-07 Score=98.50 Aligned_cols=185 Identities=16% Similarity=0.166 Sum_probs=115.9
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-------------------
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN------------------- 67 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~------------------- 67 (761)
|..-+++||.+..++.+..++...+ -++...++|++|+||||+|+.+++. +...
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~--l~c~~~~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKS--LNCETGVTATPCGVCSACLEIDS 84 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCCCCCCCHHHHHHhc
Confidence 4455779999999999999987533 3567789999999999999999873 2111
Q ss_pred --CCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HhCCceEEEEEeCCCCCCccCchhHHHhhcCC
Q 042791 68 --FEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQS-SIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG 144 (761)
Q Consensus 68 --f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~ 144 (761)
|..++++........+. ..++.+.... -..+++-++|+|+++..+....+.++..+...
T Consensus 85 ~~~~d~~ei~~~~~~~vd~------------------ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep 146 (527)
T PRK14969 85 GRFVDLIEVDAASNTQVDA------------------MRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP 146 (527)
T ss_pred CCCCceeEeeccccCCHHH------------------HHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC
Confidence 11122222111111111 1111111110 11355679999999877666677888888775
Q ss_pred CCCcEEEEEecc-hhhhhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCch-hHHHH
Q 042791 145 LHGSKILVTTRN-ESVARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPL-AAKVI 220 (761)
Q Consensus 145 ~~~~~iiiTtr~-~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 220 (761)
...+.+|++|.+ ..+... ......+++++++.++..+.+.+.+...+. ....+.+..|++.++|.+. |+..+
T Consensus 147 p~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi----~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 147 PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI----PFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 556666666654 333322 122468899999999999998886643221 2234556889999999875 44433
No 86
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=8.8e-07 Score=95.86 Aligned_cols=201 Identities=13% Similarity=0.107 Sum_probs=120.0
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (761)
+|..-+++||.+...+.|..++...+ -++...++|+.|+||||+|+.+++. +.... ......|+...+
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~--l~c~~-~~~~~pCg~C~~---- 75 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARS--LNCAQ-GPTATPCGVCES---- 75 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH--hcccc-CCCCCcccccHH----
Confidence 34556789999999999999997532 3566789999999999999999973 22110 000001111000
Q ss_pred HHHHHHH---------hcCC-CCCCCcHHHHHHHHHHH-hCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEe
Q 042791 86 AKAIIEG---------LGES-ASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT 154 (761)
Q Consensus 86 ~~~i~~~---------l~~~-~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTt 154 (761)
...+... +... .....+..++.+.+... ..+++-++|||+++..+...++.++..+..-.....+|++|
T Consensus 76 C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 0000000 0000 00111122222222111 13456699999998877788888888888766566666555
Q ss_pred c-chhhhhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCch-hHHHHHH
Q 042791 155 R-NESVARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPL-AAKVIGN 222 (761)
Q Consensus 155 r-~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 222 (761)
. ...+... ......+++.+++.++..+.+.+.+..... ....+.+..|++.++|.+. ++..+-.
T Consensus 156 te~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi----~i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 156 TEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV----VVDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred CChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4 3444433 233678999999999999999887643321 2234556888899999774 4444433
No 87
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=4.7e-09 Score=103.57 Aligned_cols=158 Identities=17% Similarity=0.138 Sum_probs=110.5
Q ss_pred cCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCc
Q 042791 394 FEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIE 473 (761)
Q Consensus 394 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~ 473 (761)
.++++|+...|.++.+..... .+....|++++.|||+.|-+.. ...+..+ ...+++|+.|+++.|.+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~-----~~~~k~~~~v~~LdLS~NL~~n----w~~v~~i---~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGI-----EEYSKILPNVRDLDLSRNLFHN----WFPVLKI---AEQLPSLENLNLSSNRLS 185 (505)
T ss_pred hhHHhhhheeecCccccccch-----hhhhhhCCcceeecchhhhHHh----HHHHHHH---HHhcccchhccccccccc
Confidence 568889999898887533221 1456889999999999987754 2233333 457899999999999876
Q ss_pred cCchh--hhccCCCcEEecCCccCcc-cccccccccccccEeecCCccccccccccCCCCCCCcccCceeecCccCC--C
Q 042791 474 RLPET--LCELYNLQKLDIRRCRNLR-ELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDG--S 548 (761)
Q Consensus 474 ~lp~~--~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~--~ 548 (761)
...++ -..+++|+.|.|++|.... ++-.....+|+|+.|++..|...........-+..|+.|++++|.....+ .
T Consensus 186 ~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~ 265 (505)
T KOG3207|consen 186 NFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY 265 (505)
T ss_pred CCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc
Confidence 43322 2467899999999998653 23333467899999999998533322223445677899999888755544 4
Q ss_pred CccCcccccCccCCc
Q 042791 549 NTCRLESLKNLQLRG 563 (761)
Q Consensus 549 ~~~~l~~L~~L~l~~ 563 (761)
....++.|..|+++.
T Consensus 266 ~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSS 280 (505)
T ss_pred ccccccchhhhhccc
Confidence 456777888877663
No 88
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.64 E-value=7.5e-07 Score=84.98 Aligned_cols=163 Identities=15% Similarity=0.207 Sum_probs=95.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhcc--CCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSI 114 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~--f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 114 (761)
....++|||+.|+|||.|.+++++ +.... -..++|+ +..++...+...+... .. ..+.+.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~------~~~~f~~~~~~~~~~~-----~~----~~~~~~~ 95 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYL------SAEEFIREFADALRDG-----EI----EEFKDRL 95 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEE------EHHHHHHHHHHHHHTT-----SH----HHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceee------cHHHHHHHHHHHHHcc-----cc----hhhhhhh
Confidence 345689999999999999999998 44433 2347777 4555666666555431 11 2233444
Q ss_pred CCceEEEEEeCCCCCCccC--chhHHHhhcC-CCCCcEEEEEecch-h--------hhhhcCCCCeeecCCCChHHHHHH
Q 042791 115 KGKKNFLVLDDVWDGDYNK--WQPFFRCLKN-GLHGSKILVTTRNE-S--------VARMMGSTDSISIKQLAEEECWSL 182 (761)
Q Consensus 115 ~~~~~LlvlDd~~~~~~~~--~~~l~~~~~~-~~~~~~iiiTtr~~-~--------~~~~~~~~~~~~l~~l~~~ea~~l 182 (761)
+ .-=+++|||++...... .+.+...+.. ...|.++|+|++.. . +...+.....+++++.++++..++
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 3 33488999996532211 2333333332 12366799998642 1 222233455899999999999999
Q ss_pred HHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHH
Q 042791 183 FKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIG 221 (761)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 221 (761)
+.+.+....- ...+++++-+++.+.+..-.+..+-
T Consensus 175 l~~~a~~~~~----~l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 175 LQKKAKERGI----ELPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHHHHhCC----CCcHHHHHHHHHhhcCCHHHHHHHH
Confidence 9998854322 2445667778777776665554443
No 89
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.64 E-value=8.8e-07 Score=96.92 Aligned_cols=200 Identities=13% Similarity=0.172 Sum_probs=115.3
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (761)
+|..-++++|.+..++.+.+.+...+ -++...++|++|+||||+|+.+++ .+-..-....+-.|.........
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk--~LnC~~~~~~~~pC~~C~~~~~~ 85 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFAN--ALNCSHKTDLLEPCQECIENVNN 85 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHH--HhcccccCCCCCchhHHHHhhcC
Confidence 45556779999999999999997532 357778999999999999999987 22211000000001000000000
Q ss_pred HHHHHHHhcCCC-CCCCcHHHHHHHHHHH-hCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEe-cchhhhhh
Q 042791 86 AKAIIEGLGESA-SGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT-RNESVARM 162 (761)
Q Consensus 86 ~~~i~~~l~~~~-~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTt-r~~~~~~~ 162 (761)
--++. .+.... .......++.+.+... ..+++-++|+|+++......+..++..+......+.+|++| +...+...
T Consensus 86 ~~Dvi-eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 86 SLDII-EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCcEE-EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 00000 000000 0011122222222211 13566699999998776667778888777655455555554 44444433
Q ss_pred -cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhH
Q 042791 163 -MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAA 217 (761)
Q Consensus 163 -~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 217 (761)
......+++.+++.++..+.+...+...+. ....+.+..+++.++|-+.-+
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI----~id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENI----SYEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 234568999999999999999886543221 223455788999999977533
No 90
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.64 E-value=3.3e-07 Score=95.57 Aligned_cols=184 Identities=15% Similarity=0.086 Sum_probs=103.1
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEec
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 77 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (761)
.|.+..+++.|++++.+++.+.+..+-.+ +-..++.+.++|++|+|||++|++++. .....| +.+.
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~ 188 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVV 188 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecc
Confidence 34556667899999999999887543211 012356789999999999999999998 443333 2111
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCcHHHHH-HHHHHHhCCceEEEEEeCCCCCC-----------ccCchhHHHh---hc
Q 042791 78 NTFDQIRIAKAIIEGLGESASGLNEFQSLM-SRIQSSIKGKKNFLVLDDVWDGD-----------YNKWQPFFRC---LK 142 (761)
Q Consensus 78 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~~~~~l~~~~~LlvlDd~~~~~-----------~~~~~~l~~~---~~ 142 (761)
...+... ..+ ...... ..+...-...+.+|++||++... ......+... +.
T Consensus 189 ----~~~l~~~---~~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld 254 (364)
T TIGR01242 189 ----GSELVRK---YIG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELD 254 (364)
T ss_pred ----hHHHHHH---hhh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhh
Confidence 1111111 011 011111 11222223467899999996521 0111122222 22
Q ss_pred C--CCCCcEEEEEecchh-----hhhhcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 143 N--GLHGSKILVTTRNES-----VARMMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 143 ~--~~~~~~iiiTtr~~~-----~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
. ...+.+||.||.... +.........+++...+.++..++|..++.+..... .. ....+++.+.|..
T Consensus 255 ~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~----~~~~la~~t~g~s 328 (364)
T TIGR01242 255 GFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DV----DLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cC----CHHHHHHHcCCCC
Confidence 1 123567888877532 222112245789999999999999998875432211 01 1456777777654
No 91
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=8e-07 Score=95.72 Aligned_cols=190 Identities=14% Similarity=0.151 Sum_probs=118.6
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC-----------------
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF----------------- 68 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f----------------- 68 (761)
+|..-++++|.+...+.|.+.+.... -.+.+.++|+.|+||||+|+.+++. +....
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~--L~C~~~~~~~pCg~C~sC~~i~ 83 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKA--LNCETAPTGEPCNTCEQCRKVT 83 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHh--ccccCCCCCCCCcccHHHHHHh
Confidence 34556678999988888888886432 2578889999999999999999973 22110
Q ss_pred ----CeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HhCCceEEEEEeCCCCCCccCchhHHHhhcC
Q 042791 69 ----EKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQS-SIKGKKNFLVLDDVWDGDYNKWQPFFRCLKN 143 (761)
Q Consensus 69 ----~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 143 (761)
..++++........ .....+.+.+.. -..+++-++|||+++......++.++..+..
T Consensus 84 ~g~hpDv~eId~a~~~~I------------------d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE 145 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGI------------------DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE 145 (624)
T ss_pred cCCCCceEEEecccccCH------------------HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc
Confidence 00112211111111 111111111111 1235667999999987766677788887776
Q ss_pred CCCCcEEEEEecc-hhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc-hhHHHH
Q 042791 144 GLHGSKILVTTRN-ESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP-LAAKVI 220 (761)
Q Consensus 144 ~~~~~~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 220 (761)
......+|++|.. ..+...+ .....+++.+++.++..+.+...+..... ....+.+..|++.++|.+ .|+..+
T Consensus 146 P~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi----~id~eal~lIA~~s~GdlR~Al~lL 221 (624)
T PRK14959 146 PPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV----DYDPAAVRLIARRAAGSVRDSMSLL 221 (624)
T ss_pred cCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4445566665554 4443322 23567899999999999999886643221 233556888999999965 566666
Q ss_pred HHHh
Q 042791 221 GNLL 224 (761)
Q Consensus 221 ~~~l 224 (761)
...+
T Consensus 222 eqll 225 (624)
T PRK14959 222 GQVL 225 (624)
T ss_pred HHHH
Confidence 5443
No 92
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=1.6e-06 Score=92.46 Aligned_cols=183 Identities=14% Similarity=0.119 Sum_probs=118.4
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhh-cc-----------------
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVK-RN----------------- 67 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~-~~----------------- 67 (761)
+|..-+++||.+...+.+...+... .-+++..++|++|+||||+|+.+++. +- ..
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~--L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARA--LVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHH--hcCCCCCCCCCCcccHHHHHHh
Confidence 3456677999999999999998643 23567789999999999999998872 21 11
Q ss_pred --CC-eeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH----hCCceEEEEEeCCCCCCccCchhHHHh
Q 042791 68 --FE-KVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSS----IKGKKNFLVLDDVWDGDYNKWQPFFRC 140 (761)
Q Consensus 68 --f~-~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~ 140 (761)
+. .++.+....... .+.+.+.+... ..+++-++|+|+++......++.++..
T Consensus 82 ~~~h~dv~eldaas~~g---------------------Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~ 140 (535)
T PRK08451 82 ENRHIDIIEMDAASNRG---------------------IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKT 140 (535)
T ss_pred hcCCCeEEEeccccccC---------------------HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHH
Confidence 10 111111111111 22222222110 124566999999988777778888888
Q ss_pred hcCCCCCcEEEEEecch-hhhhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHH
Q 042791 141 LKNGLHGSKILVTTRNE-SVARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAK 218 (761)
Q Consensus 141 ~~~~~~~~~iiiTtr~~-~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 218 (761)
+......+++|++|.+. .+... ......+++.+++.++..+.+.+.+...+. ....+.+..|++.++|.+.-+.
T Consensus 141 LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi----~i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 141 LEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV----SYEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred HhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHH
Confidence 88766567777777653 23222 223568999999999999999877643321 2234668899999999885444
Q ss_pred HH
Q 042791 219 VI 220 (761)
Q Consensus 219 ~~ 220 (761)
.+
T Consensus 217 nl 218 (535)
T PRK08451 217 TL 218 (535)
T ss_pred HH
Confidence 33
No 93
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=8.7e-07 Score=99.89 Aligned_cols=184 Identities=11% Similarity=0.065 Sum_probs=116.4
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC------------------
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF------------------ 68 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f------------------ 68 (761)
+..-+++||.+..++.|...+...+ -.+.++++|+.|+||||+|+.+++........
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~ 85 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGG 85 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCC
Confidence 4455678999999999999987532 35678899999999999999998732110100
Q ss_pred ---CeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH-HHhCCceEEEEEeCCCCCCccCchhHHHhhcCC
Q 042791 69 ---EKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQ-SSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG 144 (761)
Q Consensus 69 ---~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~ 144 (761)
..+++++......++ +..++.+.+. .-..++.-++|||+++......++.|+..+..-
T Consensus 86 ~~~~dv~eidaas~~~Vd------------------~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp 147 (824)
T PRK07764 86 PGSLDVTEIDAASHGGVD------------------DARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP 147 (824)
T ss_pred CCCCcEEEecccccCCHH------------------HHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC
Confidence 001122111111111 1111111111 112345568999999988888888899988886
Q ss_pred CCCcEEEEEecc-hhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhH
Q 042791 145 LHGSKILVTTRN-ESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAA 217 (761)
Q Consensus 145 ~~~~~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 217 (761)
...+.+|++|.+ ..+...+ .....|++..++.++..+++.+.+..... ....+....|++.++|.+..+
T Consensus 148 P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv----~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV----PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 666666655543 4454432 34678999999999999999886533221 123445678899999988433
No 94
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.60 E-value=3.7e-09 Score=103.73 Aligned_cols=276 Identities=16% Similarity=0.157 Sum_probs=145.8
Q ss_pred CcceEEeeccccccCCccccccccccccchhcccccCccccCCcC-Cc--cCchhhhccCCCcEEecCCccCcccc--cc
Q 042791 427 ACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELG-IE--RLPETLCELYNLQKLDIRRCRNLREL--PA 501 (761)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~-i~--~lp~~~~~l~~L~~L~l~~~~~~~~l--p~ 501 (761)
.-|+.|.+.++.-.+ .. .+-..-.++++++.|.+.+|. ++ .+-..-..+++|+.|++..|..++.. -.
T Consensus 138 g~lk~LSlrG~r~v~----~s---slrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVG----DS---SLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred cccccccccccccCC----cc---hhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH
Confidence 358888888765333 22 232334578888888888876 33 22233466888999999887765532 22
Q ss_pred cccccccccEeecCCccccccccccCCCCCCCcccCceeecCccCCCCccCcccccCccCCceEEEcCCC---CCCChhH
Q 042791 502 GIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLS---NVSHVDE 578 (761)
Q Consensus 502 ~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~ 578 (761)
-...+++|++|++++|..... .++. ....+++.++.+.+.||...+.-. .-.+...
T Consensus 211 la~gC~kL~~lNlSwc~qi~~--~gv~-------------------~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~ 269 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISG--NGVQ-------------------ALQRGCKELEKLSLKGCLELELEALLKAAAYCLE 269 (483)
T ss_pred HHHhhhhHHHhhhccCchhhc--Ccch-------------------HHhccchhhhhhhhcccccccHHHHHHHhccChH
Confidence 235788888998888854433 1110 011222333333333332222100 0001111
Q ss_pred HhhccccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCC-CCC--chhhhhcCCcEEE
Q 042791 579 AERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGN-IFP--KWLTLLTNLRNLT 655 (761)
Q Consensus 579 l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p--~~~~~l~~L~~L~ 655 (761)
+..+++..|..+ .+...+..-.++..|+.+..+++... ..+ .-..++.+|+.|-
T Consensus 270 i~~lnl~~c~~l-----------------------TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~ 326 (483)
T KOG4341|consen 270 ILKLNLQHCNQL-----------------------TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLE 326 (483)
T ss_pred hhccchhhhccc-----------------------cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEe
Confidence 111111122111 12222333334455566666555431 111 1123567777777
Q ss_pred eecCCCCCCCCC--CC-CCCcceEEeccCcCceEeCccccC---CCcccccCCccceeecccccccccC---------CC
Q 042791 656 LASCVNCEHLPP--LG-KLPLEKLVIDDLKSVKSVGNEFLG---IEENIIAFPKLKYLKIWATEELEET---------TD 720 (761)
Q Consensus 656 l~~~~~~~~~~~--~~-~lpl~~l~l~~l~~L~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~---------~~ 720 (761)
+++|+.+++... ++ .-| .|+.+++....... +.....+++.|+.|.+++|....+. .+
T Consensus 327 l~~c~~fsd~~ft~l~rn~~-------~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 327 LSGCQQFSDRGFTMLGRNCP-------HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred ccccchhhhhhhhhhhcCCh-------hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 777775554321 11 111 22222222222111 2222347899999999988777663 35
Q ss_pred CCccceEeeecCCCCc-CCCcccCCCCCccEEEEecCCCCC
Q 042791 721 IPRLSSLTIWYCPKLK-VLPDYLLQTTALQELRIWGCPILE 760 (761)
Q Consensus 721 l~~L~~L~l~~~~~l~-~l~~~l~~l~~L~~L~l~~c~~l~ 760 (761)
+..|..+.+.+|+.+. ..-..+..+++|+.+++-+|..++
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 6788999999998764 333446678899999998887765
No 95
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=1.3e-06 Score=95.13 Aligned_cols=199 Identities=14% Similarity=0.160 Sum_probs=120.2
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC--C--eeEEEEecCCCCH
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF--E--KVIWVCVSNTFDQ 82 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f--~--~~~~v~~~~~~~~ 82 (761)
|..-++++|.+..++.|...+...+ -++.+.++|+.|+||||+|+.+++. +.... . +..+-.+...
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~--L~c~~~~~~~~~~~~~cg~c--- 89 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARA--LNYEGPDGDGGPTIDLCGVG--- 89 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHh--hCcCCccccCCCccccCccc---
Confidence 4556679999999999999997533 3668899999999999999999983 32211 0 1111111110
Q ss_pred HHHHHHHHHHhcC--------CCCCCCcHHHHHHHHHHH-hCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEE
Q 042791 83 IRIAKAIIEGLGE--------SASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVT 153 (761)
Q Consensus 83 ~~~~~~i~~~l~~--------~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiT 153 (761)
...+.+...-.. ......+..++++.+... ...++-++|||+++..+....+.++..+..-...+++|++
T Consensus 90 -~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~ 168 (598)
T PRK09111 90 -EHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFA 168 (598)
T ss_pred -HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEE
Confidence 001111111000 001111222222222111 1245568999999877666778888888776666776655
Q ss_pred e-cchhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 154 T-RNESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 154 t-r~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
| ....+...+ .....+++++++.++..+.+.+.+..... ....+.+..|++.++|.+..+...
T Consensus 169 tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi----~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 169 TTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV----EVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred eCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5 334443332 23568999999999999999987643322 223456788999999988655433
No 96
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.59 E-value=1.6e-06 Score=83.89 Aligned_cols=206 Identities=18% Similarity=0.192 Sum_probs=125.6
Q ss_pred CCCCceeccc---chHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcCh--hh--hccCCeeEEEEecCCC
Q 042791 8 IDEGEVCGRV---DEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNND--EV--KRNFEKVIWVCVSNTF 80 (761)
Q Consensus 8 ~~~~~~vgr~---~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~--~~--~~~f~~~~~v~~~~~~ 80 (761)
+..+..||-. +.++++.+.+..+. ..+.+-+.|+|++|.|||++++++++.- .. ...--.|++|.....+
T Consensus 31 i~~~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 31 IRADRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred HhcCCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 3445566653 34555666676665 5566789999999999999999999630 00 1111247788888999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCC-ceEEEEEeCCCC---CCccCchhHHHhhcCCCC---CcEEEEE
Q 042791 81 DQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKG-KKNFLVLDDVWD---GDYNKWQPFFRCLKNGLH---GSKILVT 153 (761)
Q Consensus 81 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~-~~~LlvlDd~~~---~~~~~~~~l~~~~~~~~~---~~~iiiT 153 (761)
+...++..|+..++...................++. +--++|||++.+ ........+...+..-++ =+-|.+-
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEec
Confidence 999999999999998776666666655555555543 344899999965 223334444444443222 2334444
Q ss_pred ecchhhhhh----c-CCCCeeecCCCC-hHHHHHHHHHHhhC--CCCCCCCCchhHHHHHHHHhcCCCchhH
Q 042791 154 TRNESVARM----M-GSTDSISIKQLA-EEECWSLFKQLAFF--GCSFEDCEKLEPIGRKIACKCKGLPLAA 217 (761)
Q Consensus 154 tr~~~~~~~----~-~~~~~~~l~~l~-~~ea~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~g~Plal 217 (761)
|++.--+-. + .....+.++... +++..+|+...... -..+. .-...+.+..|...++|+.=-+
T Consensus 188 t~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 188 TREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred cHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCchHHH
Confidence 554211110 1 124566777665 44555666544321 11222 2344678899999999987433
No 97
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.59 E-value=2.8e-09 Score=102.27 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=52.2
Q ss_pred HhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcC----CccCchh-------hhccCCCcEEec
Q 042791 422 LFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELG----IERLPET-------LCELYNLQKLDI 490 (761)
Q Consensus 422 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~----i~~lp~~-------~~~l~~L~~L~l 490 (761)
....+..++.++|++|.+.. ..-+.+...+.+.++|+.-++++-- ..++|+. +..+++|++|||
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~-----EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGT-----EAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDL 99 (382)
T ss_pred HhcccCceEEEeccCCchhH-----HHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence 35677888999999887753 1222344455666778877777532 1145543 334556777777
Q ss_pred CCccCccccccc----ccccccccEeecCCc
Q 042791 491 RRCRNLRELPAG----IGKLMNMRTLLNGET 517 (761)
Q Consensus 491 ~~~~~~~~lp~~----~~~l~~L~~L~l~~~ 517 (761)
|.|-+....+.. +..+..|++|.|.+|
T Consensus 100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred cccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 766643332222 234555555555555
No 98
>PRK05642 DNA replication initiation factor; Validated
Probab=98.58 E-value=1.5e-06 Score=84.05 Aligned_cols=155 Identities=14% Similarity=0.163 Sum_probs=92.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGK 117 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 117 (761)
...++|||++|+|||.|++++++ .....-..++|++... +... ... +.+.+++-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~~------~~~~--------------~~~----~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLAE------LLDR--------------GPE----LLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHHH------HHhh--------------hHH----HHHhhhhC
Confidence 35789999999999999999987 4443345677886432 2211 011 22222222
Q ss_pred eEEEEEeCCCCCC-ccCc-hhHHHhhcCC-CCCcEEEEEecchh-hhh--------hcCCCCeeecCCCChHHHHHHHHH
Q 042791 118 KNFLVLDDVWDGD-YNKW-QPFFRCLKNG-LHGSKILVTTRNES-VAR--------MMGSTDSISIKQLAEEECWSLFKQ 185 (761)
Q Consensus 118 ~~LlvlDd~~~~~-~~~~-~~l~~~~~~~-~~~~~iiiTtr~~~-~~~--------~~~~~~~~~l~~l~~~ea~~l~~~ 185 (761)
-++|+||++... ...| ..+...+... ..|.++|+|++... -.. .+.....++++++++++..+++..
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 268899996421 1222 2344433321 23567888887522 111 122235789999999999999997
Q ss_pred HhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHH
Q 042791 186 LAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNL 223 (761)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 223 (761)
++.... ....+++...+++.+.|-.-.+..+-..
T Consensus 178 ka~~~~----~~l~~ev~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 178 RASRRG----LHLTDEVGHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred HHHHcC----CCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 664431 2234567888888888776555544433
No 99
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.58 E-value=8.2e-07 Score=101.54 Aligned_cols=181 Identities=14% Similarity=0.095 Sum_probs=100.3
Q ss_pred CCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC------CeeE-EEEecCCCCH
Q 042791 10 EGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF------EKVI-WVCVSNTFDQ 82 (761)
Q Consensus 10 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f------~~~~-~v~~~~~~~~ 82 (761)
-+++|||+.+++++++.|.... ...+.++|++|+||||+|+.+++ ++.... ...+ .+..+.-
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~--~i~~~~v~~~l~~~~i~~l~l~~l--- 254 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLAL--RIAAGDVPPALRNVRLLSLDLGLL--- 254 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHH--HHhhCCCCccccCCeEEEeehhhh---
Confidence 3568999999999999887543 34567999999999999999998 443221 1112 2222110
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh--CCceEEEEEeCCCCCC-----ccCch---hHHHhhcCCCCCcEEEE
Q 042791 83 IRIAKAIIEGLGESASGLNEFQSLMSRIQSSI--KGKKNFLVLDDVWDGD-----YNKWQ---PFFRCLKNGLHGSKILV 152 (761)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~-----~~~~~---~l~~~~~~~~~~~~iii 152 (761)
........++++.+..+.+.. .+.++++++|+++... ....+ .+...+.. ..-++|-
T Consensus 255 -----------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~Ig 321 (852)
T TIGR03345 255 -----------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIA 321 (852)
T ss_pred -----------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEE
Confidence 000011122222222222222 2468999999996521 11222 12222222 1356777
Q ss_pred Eecchhhhhhc-------CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 153 TTRNESVARMM-------GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 153 Ttr~~~~~~~~-------~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
||..++..+.+ .....+++++++.+++.+++....-.-.........++....+++.+.+..
T Consensus 322 aTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred ecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 76654332211 234689999999999999985543211110111223455667777776543
No 100
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.58 E-value=2.2e-06 Score=80.18 Aligned_cols=129 Identities=18% Similarity=0.213 Sum_probs=76.5
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHH
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIR 84 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (761)
+.++.-++++|.+.+.+.+.+-...--. +.....|.+||..|+|||++++++.. +....--.++-|.-.+-
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~--~y~~~GLRlIev~k~~L----- 91 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLN--EYADQGLRLIEVSKEDL----- 91 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHH--HHhhcCceEEEECHHHh-----
Confidence 3456667799999999998865443332 33456788999999999999999997 44433322333321111
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCC-CCCccCchhHHHhhcCC---CCCcEEEEEecc-hhh
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVW-DGDYNKWQPFFRCLKNG---LHGSKILVTTRN-ESV 159 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~-~~~~~~~~~l~~~~~~~---~~~~~iiiTtr~-~~~ 159 (761)
.++..+.+.++. +..+++|++||+. +.....+..+...+..+ .+...+|.+|.+ +.+
T Consensus 92 ----------------~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 92 ----------------GDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred ----------------ccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 122233333331 3579999999983 23345566666666543 233334444444 444
Q ss_pred h
Q 042791 160 A 160 (761)
Q Consensus 160 ~ 160 (761)
.
T Consensus 154 v 154 (249)
T PF05673_consen 154 V 154 (249)
T ss_pred c
Confidence 3
No 101
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=2e-06 Score=94.93 Aligned_cols=200 Identities=14% Similarity=0.134 Sum_probs=118.4
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (761)
++..-+++||.+...+.|..++.... -.+.+.++|+.|+||||+|+.+++ .+.......-+-.| ..-..
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~--~l~c~~~~~~~~~c----~~c~~ 79 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAK--AVNCTTNDPKGRPC----GTCEM 79 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHH--HhcCCCCCCCCCCC----ccCHH
Confidence 34556789999999999998887432 356778999999999999999997 33211100000001 11112
Q ss_pred HHHHHHHhcCC-----CCCCCcHHH---HHHHHHHH-hCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc
Q 042791 86 AKAIIEGLGES-----ASGLNEFQS---LMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN 156 (761)
Q Consensus 86 ~~~i~~~l~~~-----~~~~~~~~~---~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~ 156 (761)
.+.+....+.. .......+. +++.+... ...++-++|||+++......++.++..+......+.+|+++.+
T Consensus 80 c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred HHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 22222211110 001111222 22211111 1245679999999776666677788777765556666666544
Q ss_pred -hhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 157 -ESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 157 -~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
..+...+ .....+++++++.++....+...+..... ....+.+..+++.++|.+..+...
T Consensus 160 ~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl----~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 160 VHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI----NLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3343322 23467899999999999999887654322 123456789999999988655443
No 102
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.57 E-value=3.6e-07 Score=86.59 Aligned_cols=194 Identities=15% Similarity=0.133 Sum_probs=119.2
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCC-eeEEEEecCCCCHHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSNTFDQIR 84 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~-~~~~v~~~~~~~~~~ 84 (761)
.|...++++|.+..++.|.+.+.. + .....++|||+|.|||+-|++++....-...|. +++-.+++......
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~-~-----~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis- 103 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR-R-----ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS- 103 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh-c-----CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-
Confidence 345567799999999999999985 2 245678999999999999999998422223343 23333333332211
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHh--CCce-EEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc-hhhh
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSSI--KGKK-NFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVA 160 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~-~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~-~~~~ 160 (761)
+.+. ................ .-.+ -+||||+++....+.|..+...+.+....+++|+.+.. ..+.
T Consensus 104 vvr~----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii 173 (346)
T KOG0989|consen 104 VVRE----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRII 173 (346)
T ss_pred chhh----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCC
Confidence 0000 0000111000000000 0122 48999999998889999999998887666776655544 3332
Q ss_pred hh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc-hhHHHH
Q 042791 161 RM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP-LAAKVI 220 (761)
Q Consensus 161 ~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 220 (761)
.. ......+..+++.+++...-+...+..... ....+..+.|++.++|-- -|+.++
T Consensus 174 ~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v----~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 174 RPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGV----DIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 22 233567899999999999988887754333 234556788999998843 343333
No 103
>PRK09087 hypothetical protein; Validated
Probab=98.57 E-value=1.9e-06 Score=82.45 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=88.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGK 117 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 117 (761)
.+.++|||++|+|||+|+++++.. . .+.|++.. .+..++... +..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~--~-----~~~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK--S-----DALLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh--c-----CCEEecHH------HcchHHHHh---------------------hhc-
Confidence 356899999999999999988862 1 23344322 111111111 111
Q ss_pred eEEEEEeCCCCCCccCchhHHHhhcCC-CCCcEEEEEecc---------hhhhhhcCCCCeeecCCCChHHHHHHHHHHh
Q 042791 118 KNFLVLDDVWDGDYNKWQPFFRCLKNG-LHGSKILVTTRN---------ESVARMMGSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 118 ~~LlvlDd~~~~~~~~~~~l~~~~~~~-~~~~~iiiTtr~---------~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
-++++||++... .....+...+... ..|..+|+|++. +++...+.....++++++++++..+++.+.+
T Consensus 89 -~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 278889996532 1223344433321 225668888874 2232233445789999999999999999987
Q ss_pred hCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 188 FFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
... .....+++...|++.+.|....+..+
T Consensus 167 ~~~----~~~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 167 ADR----QLYVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHc----CCCCCHHHHHHHHHHhhhhHHHHHHH
Confidence 542 12344667888888888877766654
No 104
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=2.3e-06 Score=89.62 Aligned_cols=184 Identities=17% Similarity=0.198 Sum_probs=110.6
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhc--------cCCeeE-EEEe
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR--------NFEKVI-WVCV 76 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~--------~f~~~~-~v~~ 76 (761)
+|..-++++|.+...+.+.+.+... .-++.+.++|++|+||||+|+.+++ .+.. .|...+ .+..
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~--~l~~~~~~~~~~~~~~~~~~l~~ 84 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILAR--KINQPGYDDPNEDFSFNIFELDA 84 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHH--HhcCCCCCCCCCCCCcceEEecc
Confidence 3556677899999999999999743 2356888999999999999999987 3322 111111 1111
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEec-
Q 042791 77 SNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTR- 155 (761)
Q Consensus 77 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr- 155 (761)
......+.+ ..+.+.+.. .-..+++-++|+|+++......++.+...+......+.+|+++.
T Consensus 85 ~~~~~~~~i-~~l~~~~~~----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~ 147 (367)
T PRK14970 85 ASNNSVDDI-RNLIDQVRI----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTE 147 (367)
T ss_pred ccCCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCC
Confidence 111111111 111111110 00123556899999976544456667666655444455665553
Q ss_pred chhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhH
Q 042791 156 NESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAA 217 (761)
Q Consensus 156 ~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 217 (761)
...+...+ .....+++.++++++....+...+..... ....+.+..+++.++|.+-.+
T Consensus 148 ~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~----~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 148 KHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI----KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred cccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhCCCCHHHH
Confidence 33333222 23457899999999999999887754322 123466788888999876533
No 105
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=3.4e-06 Score=90.08 Aligned_cols=186 Identities=15% Similarity=0.142 Sum_probs=114.3
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhc-------------------
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR------------------- 66 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~------------------- 66 (761)
+|..-.+++|.+...+.+..++.... -+++..++|+.|+||||+|+.++.. +..
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~--L~c~~~~~~~pc~~c~nc~~i~ 83 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKV--LNCLNPQEGEPCGKCENCVEID 83 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH--hcCcCCCCCCCCCccHHHHHHh
Confidence 34555678999999999999997532 2466779999999999999999873 211
Q ss_pred --cCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-hCCceEEEEEeCCCCCCccCchhHHHhhcC
Q 042791 67 --NFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKN 143 (761)
Q Consensus 67 --~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 143 (761)
.+..++++..+..... .+...+.+.+... ..+++-++|+|+++......++.++..+..
T Consensus 84 ~g~~~d~~eidaas~~gv------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe 145 (486)
T PRK14953 84 KGSFPDLIEIDAASNRGI------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE 145 (486)
T ss_pred cCCCCcEEEEeCccCCCH------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc
Confidence 0111111211111111 1111222111111 135667999999977655666777777776
Q ss_pred CCCCcEEEEEe-cchhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 144 GLHGSKILVTT-RNESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 144 ~~~~~~iiiTt-r~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
......+|++| +...+...+ .....+++.+++.++....+...+..... ....+.+..+++.++|.+..+...
T Consensus 146 pp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi----~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 146 PPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI----EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred CCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 55455555554 333343322 23457899999999999999887643321 223456788899999977544433
No 106
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=2.6e-06 Score=90.41 Aligned_cols=180 Identities=15% Similarity=0.166 Sum_probs=112.9
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc------------------
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN------------------ 67 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~------------------ 67 (761)
.|..-++++|.+..++.+..++.... -++.+.++|++|+||||+|+.+++. +...
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~--l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKA--LNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHH--hcCCCcccCCCCCcccHHHHHH
Confidence 34566789999999999999997432 3577889999999999999999872 2111
Q ss_pred -----CCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HhCCceEEEEEeCCCCCCccCchhHHHhh
Q 042791 68 -----FEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQS-SIKGKKNFLVLDDVWDGDYNKWQPFFRCL 141 (761)
Q Consensus 68 -----f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~ 141 (761)
++ ++++........+ +..++.+.+.. ...+++-++|+|+++.......+.+...+
T Consensus 85 ~~~~~~d-~~~i~g~~~~gid------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~l 145 (451)
T PRK06305 85 SSGTSLD-VLEIDGASHRGIE------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTL 145 (451)
T ss_pred hcCCCCc-eEEeeccccCCHH------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHh
Confidence 01 1111111111111 11111111111 11256678999999776555667777777
Q ss_pred cCCCCCcEEEEEecc-hhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCch
Q 042791 142 KNGLHGSKILVTTRN-ESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPL 215 (761)
Q Consensus 142 ~~~~~~~~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 215 (761)
......+.+|++|.. ..+...+ .....+++.++++++..+.+.+.+..... ....+.+..+++.++|.+.
T Consensus 146 Eep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~----~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 146 EEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI----ETSREALLPIARAAQGSLR 217 (451)
T ss_pred hcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHH
Confidence 775556666666543 3333322 23568999999999999988887643211 2334567889999999764
No 107
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.3e-06 Score=93.38 Aligned_cols=197 Identities=14% Similarity=0.145 Sum_probs=115.7
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEE-----EecCCC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV-----CVSNTF 80 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v-----~~~~~~ 80 (761)
+|..-+++||.+..+..+.+.+...+ -++...++|++|+||||+|+.+++........+...|. .|+...
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~ 85 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECE 85 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCH
Confidence 45666789999999999999886432 35678899999999999999999731111111100111 111110
Q ss_pred CHHHHHHHHHHHhcC-----CCCCCCcHHHHHHHHHHH----hCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEE
Q 042791 81 DQIRIAKAIIEGLGE-----SASGLNEFQSLMSRIQSS----IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKIL 151 (761)
Q Consensus 81 ~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~ii 151 (761)
..+.+...-.. ........+++.+.+... ..+++-++|+|+++.......+.++..+..-...+.+|
T Consensus 86 ----sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~I 161 (620)
T PRK14954 86 ----SCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFI 161 (620)
T ss_pred ----HHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEE
Confidence 00000000000 000111123322222111 23456689999998766666778888887755556655
Q ss_pred EEe-cchhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCch
Q 042791 152 VTT-RNESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPL 215 (761)
Q Consensus 152 iTt-r~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 215 (761)
++| +...+...+ .....+++.+++.++....+.+.+..... ....+.+..+++.++|..-
T Consensus 162 L~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi----~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 162 FATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI----QIDADALQLIARKAQGSMR 223 (620)
T ss_pred EEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHH
Confidence 555 434444332 34568999999999999888876643211 2335568889999999664
No 108
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.52 E-value=9.8e-07 Score=92.25 Aligned_cols=182 Identities=14% Similarity=0.078 Sum_probs=99.5
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
|.+..+++.|++++.+++.+.+..+-.. +-..++.|.++|++|+|||++|+++++ +.... |+.+..
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~--~~~~~-----~i~v~~ 198 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNAT-----FIRVVG 198 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH--HhCCC-----EEEeeh
Confidence 3445567889999999999876432110 013467789999999999999999997 33322 222211
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHH-HHHHHhCCceEEEEEeCCCCCC-----------ccCchhHHHhh---cC
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMS-RIQSSIKGKKNFLVLDDVWDGD-----------YNKWQPFFRCL---KN 143 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~l~~~~~LlvlDd~~~~~-----------~~~~~~l~~~~---~~ 143 (761)
..+. ..... ....... .+...-...+.+|+|||++... ......+...+ ..
T Consensus 199 ----~~l~----~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~ 264 (389)
T PRK03992 199 ----SELV----QKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG 264 (389)
T ss_pred ----HHHh----Hhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc
Confidence 1111 11110 0111112 1222223467899999996520 11111222222 21
Q ss_pred C--CCCcEEEEEecchhhhh-hc----CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCC
Q 042791 144 G--LHGSKILVTTRNESVAR-MM----GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGL 213 (761)
Q Consensus 144 ~--~~~~~iiiTtr~~~~~~-~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 213 (761)
. ..+.+||.||....... .+ .....+++++.+.++..++|..++.+..... .. ....+++.+.|.
T Consensus 265 ~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~----~~~~la~~t~g~ 336 (389)
T PRK03992 265 FDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DV----DLEELAELTEGA 336 (389)
T ss_pred cCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-cC----CHHHHHHHcCCC
Confidence 1 12456777776533222 11 1245799999999999999998764322111 11 145566666663
No 109
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=3e-06 Score=91.96 Aligned_cols=197 Identities=12% Similarity=0.062 Sum_probs=116.6
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (761)
+|..-+++||.+..++.+..++.... -++...++|+.|+||||+|+.+++. +...-. .-...|+...+-..
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~--L~c~~~-~~~~pC~~C~~C~~- 81 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARC--LNCVNG-PTPMPCGECSSCKS- 81 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHh--hccccC-CCCCCCccchHHHH-
Confidence 34556779999999999999997532 3567889999999999999999983 221100 00001111100000
Q ss_pred HHHHHHHhcC-----CCCCCCcHHHHHHH---HHH-HhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc
Q 042791 86 AKAIIEGLGE-----SASGLNEFQSLMSR---IQS-SIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN 156 (761)
Q Consensus 86 ~~~i~~~l~~-----~~~~~~~~~~~~~~---~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~ 156 (761)
+...-.. ........+.+.+. +.. -..+++-++|+|+++..+...++.++..+......+.+|++|..
T Consensus 82 ---i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 82 ---IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred ---HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 0000000 00000112222221 111 12356668999999877666677888877765556666666544
Q ss_pred -hhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHH
Q 042791 157 -ESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAK 218 (761)
Q Consensus 157 -~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 218 (761)
..+...+ .....++..+++.++..+.+.+.+..... ....+.+..|++.++|.+..+.
T Consensus 159 ~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi----~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 159 VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI----KYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 3443332 23557899999999999999887643221 2335667889999999875443
No 110
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=2.6e-08 Score=93.29 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=62.3
Q ss_pred CCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccCCCcccccCCcc
Q 042791 625 PLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLGIEENIIAFPKL 704 (761)
Q Consensus 625 ~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~L 704 (761)
.+.++.|+++.|.+..+.. +..+++|+.|+|++|... .+---...+.+.+.|++++|.+..+.. ++.+-+|
T Consensus 306 ~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-------~~~Gwh~KLGNIKtL~La~N~iE~LSG-L~KLYSL 376 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-------ECVGWHLKLGNIKTLKLAQNKIETLSG-LRKLYSL 376 (490)
T ss_pred ccceeEEeccccceeeehh-hhhcccceEeecccchhH-------hhhhhHhhhcCEeeeehhhhhHhhhhh-hHhhhhh
Confidence 4556666666665554332 566777777777776421 111112234455566666666554322 4566778
Q ss_pred ceeeccccccccc-----CCCCCccceEeeecCCCC
Q 042791 705 KYLKIWATEELEE-----TTDIPRLSSLTIWYCPKL 735 (761)
Q Consensus 705 ~~L~l~~~~~~~~-----~~~l~~L~~L~l~~~~~l 735 (761)
..|++++|++... ++++|.|+.+.+.+|+..
T Consensus 377 vnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 377 VNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 8888888766543 778888888888888754
No 111
>PLN03150 hypothetical protein; Provisional
Probab=98.52 E-value=1.3e-07 Score=105.26 Aligned_cols=92 Identities=25% Similarity=0.389 Sum_probs=62.8
Q ss_pred ceEEeeccccccCCccccccccccccchhcccccCccccCCcCCc-cCchhhhccCCCcEEecCCccCcccccccccccc
Q 042791 429 LRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIE-RLPETLCELYNLQKLDIRRCRNLRELPAGIGKLM 507 (761)
Q Consensus 429 L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 507 (761)
++.|+|++|.+.+ .+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|...+.+|..++.++
T Consensus 420 v~~L~L~~n~L~g---------~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 420 IDGLGLDNQGLRG---------FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEECCCCCccc---------cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 5666666655554 46666677777777777777765 6666777777777777777776666777677777
Q ss_pred cccEeecCCccccccccccCCC
Q 042791 508 NMRTLLNGETYALKYMPIGISK 529 (761)
Q Consensus 508 ~L~~L~l~~~~~~~~~p~~l~~ 529 (761)
+|++|++++|.+...+|..++.
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CCCEEECcCCcccccCChHHhh
Confidence 7777777777666666666544
No 112
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.52 E-value=1.1e-07 Score=101.18 Aligned_cols=173 Identities=25% Similarity=0.289 Sum_probs=116.5
Q ss_pred CceEEEEEeecCCCCCcccccCCC-ceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccc
Q 042791 374 VKVRHLGLNFQRGASFPMSFFEFD-RLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEI 452 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 452 (761)
..+..+.+..+.+..++......+ +|+.|+++++.+. .++ .-...+++|+.|++++|.+ ..+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~------~l~-~~~~~l~~L~~L~l~~N~l----------~~l 178 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE------SLP-SPLRNLPNLKNLDLSFNDL----------SDL 178 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh------hhh-hhhhccccccccccCCchh----------hhh
Confidence 356777777777777776666664 7888877777652 221 1256778888888885444 356
Q ss_pred ccchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCC
Q 042791 453 PENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTN 532 (761)
Q Consensus 453 p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 532 (761)
|...+.++.|+.|++++|.++.+|..+..+..|++|.+++|. ....+..+.+++++..|.+.++.. ..++..++.+++
T Consensus 179 ~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~ 256 (394)
T COG4886 179 PKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSN 256 (394)
T ss_pred hhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCcee-eeccchhccccc
Confidence 665556777888888888888887777666778888888775 334455567777777777666633 333556777777
Q ss_pred CcccCceeecCccCCCCccCcccccCccCCceEE
Q 042791 533 LRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCS 566 (761)
Q Consensus 533 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 566 (761)
++.|+++.+....... +..+.+++.|+++++..
T Consensus 257 l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 257 LETLDLSNNQISSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cceecccccccccccc-ccccCccCEEeccCccc
Confidence 8888877777666555 66666777777765433
No 113
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.51 E-value=1.4e-06 Score=81.74 Aligned_cols=188 Identities=20% Similarity=0.187 Sum_probs=107.3
Q ss_pred ccCCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHH
Q 042791 4 TISLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQI 83 (761)
Q Consensus 4 ~~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (761)
+.+|-.-.+|||.++..+.+.-.+..... .++..-.|.++|++|.||||||.-+++ ++...+. ++-+....-.
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k----~tsGp~leK~ 91 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLK----ITSGPALEKP 91 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeE----ecccccccCh
Confidence 34455566799999888888777665432 245577899999999999999999998 5544432 1111111111
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCC--------CCCcE------
Q 042791 84 RIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG--------LHGSK------ 149 (761)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~--------~~~~~------ 149 (761)
.-+..++..+ .+.=++++|+++.-...--+.+..+..++ ++++|
T Consensus 92 gDlaaiLt~L----------------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 92 GDLAAILTNL----------------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred hhHHHHHhcC----------------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccC
Confidence 1111111111 12235666777553322222222222221 12222
Q ss_pred -----EEEEecchhhhhhcC--CCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHH
Q 042791 150 -----ILVTTRNESVARMMG--STDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGN 222 (761)
Q Consensus 150 -----iiiTtr~~~~~~~~~--~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 222 (761)
|=.|||.--+...+. .-.+.+++-.+.+|..+++.+.|..-.. .-.++.+.+|++.+.|-|....-+-+
T Consensus 150 ppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred CCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHHHHHH
Confidence 225677532222111 1235788899999999999988743222 33456789999999999976555544
Q ss_pred Hh
Q 042791 223 LL 224 (761)
Q Consensus 223 ~l 224 (761)
..
T Consensus 226 RV 227 (332)
T COG2255 226 RV 227 (332)
T ss_pred HH
Confidence 43
No 114
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.50 E-value=1.4e-07 Score=85.05 Aligned_cols=124 Identities=26% Similarity=0.264 Sum_probs=51.5
Q ss_pred CCceEEEEEeecCCCCCccccc-CCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPMSFF-EFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKE 451 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 451 (761)
..+.+.|++..+.+..+. .+. .+.+|+.|++++|.+..- +. +..++.|++|++++|.++ .
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-------~~-l~~L~~L~~L~L~~N~I~----------~ 78 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-------EG-LPGLPRLKTLDLSNNRIS----------S 78 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---------TT-----TT--EEE--SS-------------S
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-------cC-ccChhhhhhcccCCCCCC----------c
Confidence 457789999999998776 454 688999999999987431 11 567899999999977665 4
Q ss_pred cccch-hcccccCccccCCcCCccCc--hhhhccCCCcEEecCCccCccccc----ccccccccccEeecCC
Q 042791 452 IPENV-GKLIHLKYLNLSELGIERLP--ETLCELYNLQKLDIRRCRNLRELP----AGIGKLMNMRTLLNGE 516 (761)
Q Consensus 452 lp~~~-~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~lp----~~~~~l~~L~~L~l~~ 516 (761)
++..+ ..+++|+.|++++|.|..+- ..+..+++|+.|++.+|..... + ..+..+|+|+.||-..
T Consensus 79 i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEE
T ss_pred cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEE
Confidence 54444 36899999999999988543 5678899999999999985432 3 2357899999998643
No 115
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=4.5e-06 Score=91.56 Aligned_cols=186 Identities=11% Similarity=0.125 Sum_probs=116.1
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhc-c-C---------------
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR-N-F--------------- 68 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~-~-f--------------- 68 (761)
+|..-+++||.+...+.+.+.+.... -++...++|+.|+||||+|+.+++. +.. . .
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~--l~c~~~~~~~~c~~c~~c~~i~ 83 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKA--LNCEQGLTAEPCNVCPPCVEIT 83 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHh--hcCCCCCCCCCCCccHHHHHHh
Confidence 34566789999999999999987432 3567789999999999999999873 211 1 0
Q ss_pred ----CeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-hCCceEEEEEeCCCCCCccCchhHHHhhcC
Q 042791 69 ----EKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKN 143 (761)
Q Consensus 69 ----~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 143 (761)
..++.+........+ +..++.+.+... ..+++-++|||+++..+....+.++..+..
T Consensus 84 ~g~~~d~~eid~~s~~~v~------------------~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe 145 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVD------------------DIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE 145 (576)
T ss_pred cCCCCCeeeeeccCccCHH------------------HHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc
Confidence 001111111111111 112222222111 124556899999987766777888888877
Q ss_pred CCCCcEEEEEec-chhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc-hhHHHH
Q 042791 144 GLHGSKILVTTR-NESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP-LAAKVI 220 (761)
Q Consensus 144 ~~~~~~iiiTtr-~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 220 (761)
-...+.+|++|. ...+...+ .....+++.+++.++....+...+..... ....+.+..|++.++|.. .++..+
T Consensus 146 pp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi----~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 146 PPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI----SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555666665554 44444332 33567899999999999888876543221 223456788999999866 444444
No 116
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.50 E-value=1.4e-07 Score=100.55 Aligned_cols=180 Identities=31% Similarity=0.322 Sum_probs=113.3
Q ss_pred ccCCcceEEeeccccccCCccccccccccccchhccc-ccCccccCCcCCccCchhhhccCCCcEEecCCccCccccccc
Q 042791 424 SKLACLRALVISQFYISGSHHEANRIKEIPENVGKLI-HLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAG 502 (761)
Q Consensus 424 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~ 502 (761)
..++.++.|++.+|.++ .+|.....+. +|+.|++++|.+..+|..+..+++|+.|++++|. +..+|..
T Consensus 113 ~~~~~l~~L~l~~n~i~----------~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~ 181 (394)
T COG4886 113 LELTNLTSLDLDNNNIT----------DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKL 181 (394)
T ss_pred hcccceeEEecCCcccc----------cCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhh
Confidence 34467778877754443 5666565564 7888888888888887777888888888888877 6667765
Q ss_pred ccccccccEeecCCccccccccccCCCCCCCcccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhc
Q 042791 503 IGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERL 582 (761)
Q Consensus 503 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 582 (761)
...+++|+.|++++| ....+|..+.....|+.|.+..+.....+.....+.++..+.+.++ .+..+
T Consensus 182 ~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~------------ 247 (394)
T COG4886 182 LSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDL------------ 247 (394)
T ss_pred hhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeec------------
Confidence 557788888888877 4455665555555677777766643333333344444444432211 11100
Q ss_pred cccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCC
Q 042791 583 QLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNC 662 (761)
Q Consensus 583 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 662 (761)
...+..+++++.|+++++.+..++. +..+.+++.|+++++...
T Consensus 248 ------------------------------------~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 248 ------------------------------------PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ------------------------------------cchhccccccceecccccccccccc-ccccCccCEEeccCcccc
Confidence 1122334557777777777777665 777788888888887654
Q ss_pred CCC
Q 042791 663 EHL 665 (761)
Q Consensus 663 ~~~ 665 (761)
...
T Consensus 291 ~~~ 293 (394)
T COG4886 291 NAL 293 (394)
T ss_pred ccc
Confidence 433
No 117
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=4.1e-06 Score=92.14 Aligned_cols=182 Identities=14% Similarity=0.130 Sum_probs=116.0
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhc--------------------
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR-------------------- 66 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~-------------------- 66 (761)
|..-++++|.+...+.+..++.... -++.+.++|+.|+||||+|+.++.. +..
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~--l~c~~~~~~~~~Cg~C~sC~~~~ 85 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKT--INCQNLTADGEACNECESCVAFN 85 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHH--hCCCCCCCCCCCCCcchHHHHHh
Confidence 4556789999999999999997432 3577899999999999999998872 211
Q ss_pred ---cCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcC
Q 042791 67 ---NFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKN 143 (761)
Q Consensus 67 ---~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 143 (761)
+|+ +..+........+.+. .+..++... -..+++-++|||+++..+...++.++..+..
T Consensus 86 ~~~~~n-~~~ld~~~~~~vd~Ir-~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe 147 (614)
T PRK14971 86 EQRSYN-IHELDAASNNSVDDIR-NLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE 147 (614)
T ss_pred cCCCCc-eEEecccccCCHHHHH-HHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhC
Confidence 121 1122222111111111 111111100 0124556889999988777778888888887
Q ss_pred CCCCcEEEEEe-cchhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhH
Q 042791 144 GLHGSKILVTT-RNESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAA 217 (761)
Q Consensus 144 ~~~~~~iiiTt-r~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 217 (761)
-...+.+|++| ....+...+ .....+++.+++.++....+...+...+. ....+.+..|++.++|...-+
T Consensus 148 pp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi----~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 148 PPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI----TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 55566666554 444444432 33568999999999999999887644321 223456788999999977533
No 118
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.49 E-value=3.6e-06 Score=89.32 Aligned_cols=169 Identities=18% Similarity=0.148 Sum_probs=103.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhc--cCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKR--NFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIK 115 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~--~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 115 (761)
...++|+|+.|+|||+|++++++ .+.. .-..++|+ +..++...+...+.... ...+.+.+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-------~~~~~~~~~~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYM------SGDEFARKAVDILQKTH-------KEIEQFKNEIC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-------hHHHHHHHHhc
Confidence 34688999999999999999998 4432 22445666 44456666665554211 12233434333
Q ss_pred CceEEEEEeCCCCCC--ccCchhHHHhhcC-CCCCcEEEEEecc-hhhh--------hhcCCCCeeecCCCChHHHHHHH
Q 042791 116 GKKNFLVLDDVWDGD--YNKWQPFFRCLKN-GLHGSKILVTTRN-ESVA--------RMMGSTDSISIKQLAEEECWSLF 183 (761)
Q Consensus 116 ~~~~LlvlDd~~~~~--~~~~~~l~~~~~~-~~~~~~iiiTtr~-~~~~--------~~~~~~~~~~l~~l~~~ea~~l~ 183 (761)
..-++|+||++... ....+.+...+.. ...+..||+|+.. +... ..+.....+++++++.++..+++
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 33488899996532 1222333333332 1224458888653 2222 12333457889999999999999
Q ss_pred HHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHHh
Q 042791 184 KQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL 224 (761)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 224 (761)
.+.+..... .....++++..|++.++|.|..+.-+...+
T Consensus 285 ~~~~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 285 KKEIKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 998754321 013456778999999999998877665433
No 119
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=6.1e-06 Score=90.74 Aligned_cols=199 Identities=14% Similarity=0.130 Sum_probs=117.6
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-CCeeEEEEecCCCCHHHH
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f~~~~~v~~~~~~~~~~~ 85 (761)
+..-++++|.+...+.|.+++...+ -.+.+.++|+.|+||||+|+.+++. +... ........++. -..
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~--L~c~~~~~~~~~~Cg~----C~~ 80 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKS--LNCLNSDKPTPEPCGK----CEL 80 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHH--hcCCCcCCCCCCCCcc----cHH
Confidence 4455678999999999999987532 2467889999999999999999983 3221 11100001111 111
Q ss_pred HHHHHHHhcC-----CCCCCCcHHHHHHHHHHH----hCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc
Q 042791 86 AKAIIEGLGE-----SASGLNEFQSLMSRIQSS----IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN 156 (761)
Q Consensus 86 ~~~i~~~l~~-----~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~ 156 (761)
.+.+...... ........+.+.+.+... ..+++-++|||+++......++.++..+..-.....+|++|.+
T Consensus 81 C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~ 160 (620)
T PRK14948 81 CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160 (620)
T ss_pred HHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCC
Confidence 1222111111 000111222222222111 1245568999999877666778888888765545555555544
Q ss_pred -hhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 157 -ESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 157 -~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
..+...+ .....+++..++.++..+.+.+.+..... ....+.+..|++.++|.+..+..+
T Consensus 161 ~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi----~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI----EIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3343332 34567889999999999888876643211 122356788999999988654433
No 120
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=6.8e-06 Score=89.71 Aligned_cols=196 Identities=16% Similarity=0.115 Sum_probs=113.6
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (761)
+|..-++++|.+...+.+.+++.... -++...++|+.|+||||+|+.+++ .+...-... -.+|+.. ..
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAk--al~c~~~~~-~~pC~~C----~~ 78 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAK--AVNCLNPPD-GEPCNEC----EI 78 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH--HhcCCCCCC-CCCCCcc----HH
Confidence 45566789999999999999997533 357788999999999999999987 222110000 0001100 01
Q ss_pred HHHHHHHhcCC-----CCCCCcHH---HHHHHHHHH-hCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEec-
Q 042791 86 AKAIIEGLGES-----ASGLNEFQ---SLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTR- 155 (761)
Q Consensus 86 ~~~i~~~l~~~-----~~~~~~~~---~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr- 155 (761)
...+....... .......+ ++.+.+... ..++.-++|||+++......+..++..+........+|++|.
T Consensus 79 C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~ 158 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTE 158 (559)
T ss_pred HHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 11111000000 00001112 222221111 135567899999987666677778777766544555555543
Q ss_pred chhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhH
Q 042791 156 NESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAA 217 (761)
Q Consensus 156 ~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 217 (761)
...+...+ .....+++.+++.++..+.+...+...+. ....+.+..|++.++|.+..+
T Consensus 159 ~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi----~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 159 PHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI----EYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred hhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 33333322 23567899999999999999887643221 123456788888998877543
No 121
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.45 E-value=2.5e-06 Score=87.66 Aligned_cols=151 Identities=17% Similarity=0.146 Sum_probs=90.7
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (761)
+|..-++++|.++..+.+..++... .-+..++++|++|+||||+|+++++ .... .+.+++... .....+
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~--~~~~---~~~~i~~~~-~~~~~i 84 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCN--EVGA---EVLFVNGSD-CRIDFV 84 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHH--HhCc---cceEeccCc-ccHHHH
Confidence 3455577899999999999998742 2357787899999999999999987 3322 234444443 111111
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHH--hCCceEEEEEeCCCCC-CccCchhHHHhhcCCCCCcEEEEEecchh-hhh
Q 042791 86 AKAIIEGLGESASGLNEFQSLMSRIQSS--IKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNES-VAR 161 (761)
Q Consensus 86 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~--l~~~~~LlvlDd~~~~-~~~~~~~l~~~~~~~~~~~~iiiTtr~~~-~~~ 161 (761)
...+.. +... ....+-++|+||++.. .......+...+.....++++|+|+.... +.+
T Consensus 85 ~~~l~~------------------~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 85 RNRLTR------------------FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHH------------------HHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchH
Confidence 111111 1111 1234568999999764 22333444444555455678888886532 222
Q ss_pred hc-CCCCeeecCCCChHHHHHHHHH
Q 042791 162 MM-GSTDSISIKQLAEEECWSLFKQ 185 (761)
Q Consensus 162 ~~-~~~~~~~l~~l~~~ea~~l~~~ 185 (761)
.+ .....+.++..+.++..+++..
T Consensus 147 ~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 147 PLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred HHHhhceEEEeCCCCHHHHHHHHHH
Confidence 11 2345678888888888766554
No 122
>PF14516 AAA_35: AAA-like domain
Probab=98.45 E-value=1e-05 Score=82.78 Aligned_cols=199 Identities=13% Similarity=0.091 Sum_probs=118.5
Q ss_pred ceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC-----CCHHHHH
Q 042791 12 EVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT-----FDQIRIA 86 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~-----~~~~~~~ 86 (761)
..|.|...-+++.+.+..+ ...+.|.|+-.+|||+|..++.+ .....--.++++++... .+...++
T Consensus 12 ~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~--~l~~~~~~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLE--RLQQQGYRCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred cccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHH--HHHHCCCEEEEEEeecCCCcccCCHHHHH
Confidence 3467886777777777643 35889999999999999999987 45433344667776542 2344444
Q ss_pred HHHH----HHhcCCCC-------CCCcHHHHHHHHHHHh---CCceEEEEEeCCCCCCc--cCchhHHHhhcC----CC-
Q 042791 87 KAII----EGLGESAS-------GLNEFQSLMSRIQSSI---KGKKNFLVLDDVWDGDY--NKWQPFFRCLKN----GL- 145 (761)
Q Consensus 87 ~~i~----~~l~~~~~-------~~~~~~~~~~~~~~~l---~~~~~LlvlDd~~~~~~--~~~~~l~~~~~~----~~- 145 (761)
+.++ +++..... ...........+.+.+ .+++++|+||++|..-. ...+.+...++. ..
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 4444 44443221 0111122233333322 26899999999976221 112233333321 11
Q ss_pred ----CCcEEEEEecch-hhhhh-----cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCch
Q 042791 146 ----HGSKILVTTRNE-SVARM-----MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPL 215 (761)
Q Consensus 146 ----~~~~iiiTtr~~-~~~~~-----~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 215 (761)
..-++++....+ .+... +.....+++++|+.+|+..|+.++... ......++|...++|+|.
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--------~~~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--------FSQEQLEQLMDWTGGHPY 234 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--------CCHHHHHHHHHHHCCCHH
Confidence 011233322211 11111 122347899999999999999886421 122338999999999999
Q ss_pred hHHHHHHHhhCC
Q 042791 216 AAKVIGNLLRSK 227 (761)
Q Consensus 216 al~~~~~~l~~~ 227 (761)
.+..++..+...
T Consensus 235 Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 235 LVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHc
Confidence 999999999775
No 123
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.44 E-value=2.2e-06 Score=97.55 Aligned_cols=154 Identities=19% Similarity=0.216 Sum_probs=88.8
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-----C-CeeEEEEecCCCCHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-----F-EKVIWVCVSNTFDQIR 84 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-----f-~~~~~v~~~~~~~~~~ 84 (761)
++++||+++++++.+.|.... ..-+.++|++|+|||++|+.+++ ++... + +..+|. + +...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~--~~~~~~~p~~l~~~~~~~-~----~~~~ 248 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLAL--RIAEGKVPENLKNAKIYS-L----DMGS 248 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHH--HHHhCCCchhhcCCeEEE-e----cHHH
Confidence 579999999999999887432 34567999999999999999998 43221 1 222222 1 1111
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-CCceEEEEEeCCCCCC---------ccCchhHHHhhcCCCCCcEEEEEe
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSSI-KGKKNFLVLDDVWDGD---------YNKWQPFFRCLKNGLHGSKILVTT 154 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDd~~~~~---------~~~~~~l~~~~~~~~~~~~iiiTt 154 (761)
+.. ......+.++.+..+.+.+ ...+.+|++|+++... .+..+.+...+.. ...++|-+|
T Consensus 249 l~a--------~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaT 318 (731)
T TIGR02639 249 LLA--------GTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGST 318 (731)
T ss_pred Hhh--------hccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEec
Confidence 110 0011123333333333333 3457899999996421 1112223333332 134566555
Q ss_pred cchhhhhh------c-CCCCeeecCCCChHHHHHHHHHHh
Q 042791 155 RNESVARM------M-GSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 155 r~~~~~~~------~-~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
..++..+. + .....++++.++.++..+++....
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 54332211 1 124579999999999999999765
No 124
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.43 E-value=2e-06 Score=77.86 Aligned_cols=157 Identities=13% Similarity=0.140 Sum_probs=89.0
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC-CeeEEEEecCCCCHHHH
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~ 85 (761)
|..-.+.||.++.++++.-.... +..+.+.|.||||+||||-+..+++. -+...| ++++-+++++....+-+
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~-LLG~~~ke~vLELNASdeRGIDvV 95 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLARE-LLGDSYKEAVLELNASDERGIDVV 95 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHH-HhChhhhhHhhhccCccccccHHH
Confidence 34445689999999998877653 33456779999999999999999873 222333 44444444444333322
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHH-H--h-CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEec-chhhh
Q 042791 86 AKAIIEGLGESASGLNEFQSLMSRIQS-S--I-KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTR-NESVA 160 (761)
Q Consensus 86 ~~~i~~~l~~~~~~~~~~~~~~~~~~~-~--l-~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr-~~~~~ 160 (761)
-..| ....+ . + .++.-++|+|++|........+++.-..--.+.+|+.+... +..+.
T Consensus 96 Rn~I------------------K~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIi 157 (333)
T KOG0991|consen 96 RNKI------------------KMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKII 157 (333)
T ss_pred HHHH------------------HHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhh
Confidence 2111 11111 1 1 24566899999988655555555554443333444443322 12221
Q ss_pred hh-cCCCCeeecCCCChHHHHHHHHHHhh
Q 042791 161 RM-MGSTDSISIKQLAEEECWSLFKQLAF 188 (761)
Q Consensus 161 ~~-~~~~~~~~l~~l~~~ea~~l~~~~~~ 188 (761)
.. -......+...+++.+...-+...+-
T Consensus 158 EPIQSRCAiLRysklsd~qiL~Rl~~v~k 186 (333)
T KOG0991|consen 158 EPIQSRCAILRYSKLSDQQILKRLLEVAK 186 (333)
T ss_pred hhHHhhhHhhhhcccCHHHHHHHHHHHHH
Confidence 11 12234566677777777666655543
No 125
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.41 E-value=5.3e-08 Score=91.28 Aligned_cols=124 Identities=30% Similarity=0.245 Sum_probs=74.6
Q ss_pred CCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccc
Q 042791 426 LACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGK 505 (761)
Q Consensus 426 ~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 505 (761)
.+.|+.||||+|.++ .+..++.-.+.++.|++++|.|..+-. +..+.+|+.|||++|. +..+-..=.+
T Consensus 283 Wq~LtelDLS~N~I~----------~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~K 350 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT----------QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLK 350 (490)
T ss_pred Hhhhhhccccccchh----------hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhh
Confidence 356777777755543 444555556667777777777765543 6777777777777766 3333221245
Q ss_pred cccccEeecCCccccccccccCCCCCCCcccCceeecCccC--CCCccCcccccCccCCc
Q 042791 506 LMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVD--GSNTCRLESLKNLQLRG 563 (761)
Q Consensus 506 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~ 563 (761)
+-|.+.|.+++|. ++.+ ++++.+.+|..|++.+|.+... ...+++++-|+.+.+.+
T Consensus 351 LGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 351 LGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred hcCEeeeehhhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 6677777777763 2222 3466666777777776664332 23455666666666654
No 126
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.40 E-value=8.6e-06 Score=90.04 Aligned_cols=207 Identities=18% Similarity=0.155 Sum_probs=104.4
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC---CeeEEEEec--CC-C
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF---EKVIWVCVS--NT-F 80 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f---~~~~~v~~~--~~-~ 80 (761)
+..-++++|++..+..+.+.+... .+..++|+|++|+||||+|+.+++.......+ ...-|+.+. .. .
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~ 223 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW 223 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC
Confidence 344567899999999988887533 34679999999999999999998632111111 122344332 21 1
Q ss_pred CHHHHHHHHH---------------HHhcCCCC----------------CCC-cHHHHHHHHHHHhCCceEEEEEeCCCC
Q 042791 81 DQIRIAKAII---------------EGLGESAS----------------GLN-EFQSLMSRIQSSIKGKKNFLVLDDVWD 128 (761)
Q Consensus 81 ~~~~~~~~i~---------------~~l~~~~~----------------~~~-~~~~~~~~~~~~l~~~~~LlvlDd~~~ 128 (761)
+...+...++ ...+.... ... --......+.+.++.+++.++-|..|.
T Consensus 224 d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~ 303 (615)
T TIGR02903 224 DPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDP 303 (615)
T ss_pred CHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceecc
Confidence 1222211111 11110000 000 001123344444444455555444443
Q ss_pred CCccCchhHHHhhcCCCCCcEEEE--Eecchh-hhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHH
Q 042791 129 GDYNKWQPFFRCLKNGLHGSKILV--TTRNES-VARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGR 204 (761)
Q Consensus 129 ~~~~~~~~l~~~~~~~~~~~~iii--Ttr~~~-~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~ 204 (761)
.+...|+.+...+....+...+++ ||++.. +...+ .....+.+.+++.++..+++.+.+..... ...+++.+
T Consensus 304 ~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v----~ls~eal~ 379 (615)
T TIGR02903 304 DDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV----HLAAGVEE 379 (615)
T ss_pred CCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHH
Confidence 333333333333333333333444 455432 22211 22346789999999999999997643211 12234556
Q ss_pred HHHHhcCCCchhHHHHHHH
Q 042791 205 KIACKCKGLPLAAKVIGNL 223 (761)
Q Consensus 205 ~i~~~~~g~Plal~~~~~~ 223 (761)
.|.+.+..-+.++..++..
T Consensus 380 ~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 380 LIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHCCCcHHHHHHHHHHH
Confidence 6666555445666655443
No 127
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.39 E-value=3.6e-06 Score=96.94 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=88.9
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-----C-CeeEEEEecCCCCHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-----F-EKVIWVCVSNTFDQIR 84 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-----f-~~~~~v~~~~~~~~~~ 84 (761)
++++||+++++++.+.|.... ..-+.++|++|+|||++|+.++. ++... . +..+|. + +...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~--~i~~~~vp~~l~~~~i~~-l----~~~~ 245 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQ--RIVNRDVPDILEDKLVIT-L----DIGL 245 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEE-e----eHHH
Confidence 468999999999999997543 34567999999999999999998 33211 1 223332 1 1111
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-CCceEEEEEeCCCCC-------CccCchhHHHhhcCCCCCcEEEEEecc
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSSI-KGKKNFLVLDDVWDG-------DYNKWQPFFRCLKNGLHGSKILVTTRN 156 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDd~~~~-------~~~~~~~l~~~~~~~~~~~~iiiTtr~ 156 (761)
+ +. ......+.++.+..+.+.+ ...+.++++|+++.- .......++..... ...-++|.+|..
T Consensus 246 l-------~a-g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg~l~~IgaTt~ 316 (821)
T CHL00095 246 L-------LA-GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RGELQCIGATTL 316 (821)
T ss_pred H-------hc-cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CCCcEEEEeCCH
Confidence 1 11 1112233444444343333 356789999999531 01112222222111 113466766665
Q ss_pred hhhhhh------c-CCCCeeecCCCChHHHHHHHHHH
Q 042791 157 ESVARM------M-GSTDSISIKQLAEEECWSLFKQL 186 (761)
Q Consensus 157 ~~~~~~------~-~~~~~~~l~~l~~~ea~~l~~~~ 186 (761)
+..... + .....++++..+.++...++...
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 543221 1 22457888999999988888653
No 128
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=1.3e-05 Score=80.80 Aligned_cols=195 Identities=15% Similarity=0.160 Sum_probs=116.0
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhh-------------hccCCeeEEEEec
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEV-------------KRNFEKVIWVCVS 77 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~-------------~~~f~~~~~v~~~ 77 (761)
++++|.++..+.+.+.+...+ -++...++|+.|+||+++|.++++..-- ...++-+.|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 468999999999999997543 2578999999999999999888873100 0112223333211
Q ss_pred CCCCHHHHHHHHHHHhc--CCCCCCCcHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEE
Q 042791 78 NTFDQIRIAKAIIEGLG--ESASGLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKI 150 (761)
Q Consensus 78 ~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~i 150 (761)
.......+-..-+...+ .........+++ +.+.+.+ .+.+-++|+|+++.......+.++..+..-. .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000000001111111 111111222232 2333333 3567799999998877777788888887655 4455
Q ss_pred EEEe-cchhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHH
Q 042791 151 LVTT-RNESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKV 219 (761)
Q Consensus 151 iiTt-r~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 219 (761)
|++| ....+.+.+ .....+++.++++++..+.+.+..... ........++..++|.|.....
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-------~~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-------ILNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-------cchhHHHHHHHHcCCCHHHHHH
Confidence 5554 445554443 346789999999999999999864211 1111246788999999965544
No 129
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.38 E-value=2.6e-05 Score=72.63 Aligned_cols=181 Identities=18% Similarity=0.191 Sum_probs=108.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHH----HHHHHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQ----SLMSRIQ 111 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~----~~~~~~~ 111 (761)
++.+++.|.|.-|+|||.++|++.. ...+.-..++ +--....+...+...+...+.... ..... .....+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~--s~~~d~~~~v-~i~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLA--SLNEDQVAVV-VIDKPTLSDATLLEAIVADLESQP--KVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHH--hcCCCceEEE-EecCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHHHHHH
Confidence 3456899999999999999995554 2222212221 223344567778888888887622 22222 2223333
Q ss_pred HHh-CCce-EEEEEeCCCCCCccCchhHHHhhcCCCCCc---EEEEEecch-------hhhhhcC-CCCe-eecCCCChH
Q 042791 112 SSI-KGKK-NFLVLDDVWDGDYNKWQPFFRCLKNGLHGS---KILVTTRNE-------SVARMMG-STDS-ISIKQLAEE 177 (761)
Q Consensus 112 ~~l-~~~~-~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~---~iiiTtr~~-------~~~~~~~-~~~~-~~l~~l~~~ 177 (761)
+.. ++++ +.+++||........++.+.........++ +|+.....+ ......+ .... |++.|++++
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 332 4566 999999997655555555544433222222 344443321 0111111 1223 899999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHH
Q 042791 178 ECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGN 222 (761)
Q Consensus 178 ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 222 (761)
+...|+..+..+...+.+ -...+....|.....|.|.++..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~-l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEP-LFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcc-cCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999988765533322 23345578888999999999988864
No 130
>PLN03150 hypothetical protein; Provisional
Probab=98.38 E-value=5.9e-07 Score=100.14 Aligned_cols=110 Identities=25% Similarity=0.351 Sum_probs=91.7
Q ss_pred ceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCc-cCc
Q 042791 398 RLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIE-RLP 476 (761)
Q Consensus 398 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~-~lp 476 (761)
.++.|+|.++.+ .+.++.. +..+++|+.|+|++|.+.+ .+|..++.+++|++|++++|.++ .+|
T Consensus 419 ~v~~L~L~~n~L-----~g~ip~~-i~~L~~L~~L~Ls~N~l~g---------~iP~~~~~l~~L~~LdLs~N~lsg~iP 483 (623)
T PLN03150 419 FIDGLGLDNQGL-----RGFIPND-ISKLRHLQSINLSGNSIRG---------NIPPSLGSITSLEVLDLSYNSFNGSIP 483 (623)
T ss_pred EEEEEECCCCCc-----cccCCHH-HhCCCCCCEEECCCCcccC---------cCChHHhCCCCCCEEECCCCCCCCCCc
Confidence 477888877764 3455554 7899999999999888876 68888999999999999999988 799
Q ss_pred hhhhccCCCcEEecCCccCccccccccccc-ccccEeecCCcccccc
Q 042791 477 ETLCELYNLQKLDIRRCRNLRELPAGIGKL-MNMRTLLNGETYALKY 522 (761)
Q Consensus 477 ~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l-~~L~~L~l~~~~~~~~ 522 (761)
..++++++|+.|+|++|...+.+|..+..+ .++..+++.+|..+..
T Consensus 484 ~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 484 ESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred hHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 999999999999999999888999888654 5777888888855443
No 131
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.35 E-value=5.4e-06 Score=76.53 Aligned_cols=184 Identities=18% Similarity=0.145 Sum_probs=108.9
Q ss_pred CCCCCCceecccchHH---HHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCH
Q 042791 6 SLIDEGEVCGRVDEKN---ELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQ 82 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~---~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~ 82 (761)
+.+.-++.||.++... .++++|..+..=++..++-|..+|++|.|||.+|+++++. .+..| +.|..
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kvp~---l~vka------ 184 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKVPL---LLVKA------ 184 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCCce---EEech------
Confidence 3445567888876544 4778887766544667999999999999999999999983 33222 11211
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCC------------CCccCchhHHHhhcC--CCCCc
Q 042791 83 IRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWD------------GDYNKWQPFFRCLKN--GLHGS 148 (761)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~------------~~~~~~~~l~~~~~~--~~~~~ 148 (761)
. .-|.+.++. ....+.+...++-+.-++++++|++|- +-.+..++++..+.. .+.|.
T Consensus 185 t---~liGehVGd------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV 255 (368)
T COG1223 185 T---ELIGEHVGD------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255 (368)
T ss_pred H---HHHHHHhhh------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence 1 122222221 112222222233345689999999843 112223444544443 33466
Q ss_pred EEEEEecchhhhhhc---CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 149 KILVTTRNESVARMM---GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 149 ~iiiTtr~~~~~~~~---~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
..|.+|....+.+.- ...+.++..--+++|..+++..++-.-.-+ .+.-.+.+++.++|+-
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plp-----v~~~~~~~~~~t~g~S 319 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP-----VDADLRYLAAKTKGMS 319 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCc-----cccCHHHHHHHhCCCC
Confidence 666666665554431 124567888889999999999887432222 2222567777777754
No 132
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.34 E-value=2e-05 Score=77.42 Aligned_cols=169 Identities=17% Similarity=0.174 Sum_probs=106.8
Q ss_pred CCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHH
Q 042791 10 EGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAI 89 (761)
Q Consensus 10 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 89 (761)
...|-+|+.+++++..++...++ .-+.+|.|+|-+|.|||.+++++.+. .. -..+|+++...++.+.+...|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~--~n---~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRK--LN---LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhh--cC---CcceeeehHHhccHHHHHHHH
Confidence 35678999999999999986542 23566799999999999999999983 32 236799999999999999999
Q ss_pred HHHhcCCCCCCCc----HHH---HHHHHHH--Hh--CCceEEEEEeCCCCCCcc---CchhHHHhhcCCCCCcEEEEEec
Q 042791 90 IEGLGESASGLNE----FQS---LMSRIQS--SI--KGKKNFLVLDDVWDGDYN---KWQPFFRCLKNGLHGSKILVTTR 155 (761)
Q Consensus 90 ~~~l~~~~~~~~~----~~~---~~~~~~~--~l--~~~~~LlvlDd~~~~~~~---~~~~l~~~~~~~~~~~~iiiTtr 155 (761)
+.++.....+... .+. .+..+.+ .. ++..++||+|+++.-... -+..+.....-.....-+|+++-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 9998532222111 111 2222222 12 246899999999652211 11222222222222333444443
Q ss_pred c--hhhhh-hcCCC--CeeecCCCChHHHHHHHHHH
Q 042791 156 N--ESVAR-MMGST--DSISIKQLAEEECWSLFKQL 186 (761)
Q Consensus 156 ~--~~~~~-~~~~~--~~~~l~~l~~~ea~~l~~~~ 186 (761)
. +.... .++.. ..+..+..+.+|..+++.+.
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 3 22222 23333 35677889999999999874
No 133
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.33 E-value=3.6e-07 Score=67.31 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=31.7
Q ss_pred ccCccccCCcCCccCch-hhhccCCCcEEecCCccCcccccccccccccccEeecCCc
Q 042791 461 HLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGET 517 (761)
Q Consensus 461 ~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 517 (761)
+|++|++++|.++.+|. .|.++++|++|++++|.....-|..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45566666666655553 4555666666666655532222234566666666666665
No 134
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.32 E-value=1.3e-06 Score=84.36 Aligned_cols=91 Identities=18% Similarity=0.085 Sum_probs=60.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC--CCHHHHHHHHHHHhcCCCCCCCcHH------HHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT--FDQIRIAKAIIEGLGESASGLNEFQ------SLMS 108 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 108 (761)
..+.++|.|++|+|||||+++++++... .+|+.++|+.+..+ .+..++++.+...+-....+..... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 3467889999999999999999985322 37888999987666 6888898888433322222211111 1122
Q ss_pred HHHHH-hCCceEEEEEeCCCC
Q 042791 109 RIQSS-IKGKKNFLVLDDVWD 128 (761)
Q Consensus 109 ~~~~~-l~~~~~LlvlDd~~~ 128 (761)
..... -.++++++++|++.+
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 22222 247899999999943
No 135
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.31 E-value=1.4e-06 Score=86.82 Aligned_cols=232 Identities=23% Similarity=0.235 Sum_probs=152.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccC-CeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhC
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIK 115 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 115 (761)
..|-|.++|+|||||||++-++.. ....| +.+.++.+....+...+.-.+...++..... .+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 357899999999999999998886 45566 6677888888878777777777766654322 1233444556667
Q ss_pred CceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchhhhhhcCCCCeeecCCCChH-HHHHHHHHHhhCCCCC-
Q 042791 116 GKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVARMMGSTDSISIKQLAEE-ECWSLFKQLAFFGCSF- 193 (761)
Q Consensus 116 ~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~~~~~~~~~~l~~l~~~-ea~~l~~~~~~~~~~~- 193 (761)
+++.++|+||-.+. ...-..+...+....+.-.++.|+|..... .......+.+++.- ++.++|...+......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 88999999997331 122233444455555556788888876443 23556777777744 7889987766532221
Q ss_pred CCCCchhHHHHHHHHhcCCCchhHHHHHHHhhCCCCHHHHHHHHhhhhhccccc-------ccccccchhcccCCCCCCc
Q 042791 194 EDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKVQEI-------GQDLLAPLLLSYNDLPSNS 266 (761)
Q Consensus 194 ~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~l~~s~~~l~~~~ 266 (761)
.-.......+..|.+..+|.|++|...+...+.-. .++....+......+... .+.....+..||.-|+.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg-- 239 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG-- 239 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh--
Confidence 11233445688999999999999999998887653 333333333222222222 13355667788888887
Q ss_pred chhHHhhhhcCCCCC
Q 042791 267 MVKQCFSYCTVFPKD 281 (761)
Q Consensus 267 ~~~~~~~~~~~~~~~ 281 (761)
..+..|-.++.|...
T Consensus 240 we~~~~~rLa~~~g~ 254 (414)
T COG3903 240 WERALFGRLAVFVGG 254 (414)
T ss_pred HHHHHhcchhhhhhh
Confidence 677777777777655
No 136
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.30 E-value=2.3e-05 Score=83.12 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=95.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccC--CeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIK 115 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f--~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 115 (761)
...++|+|++|+|||+|++++++ .+.... ..++|+++ .++...+...+... ..+. +.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHH
Confidence 45688999999999999999998 444433 34667743 33444444444321 1222 223332
Q ss_pred CceEEEEEeCCCCCCcc--CchhHHHhhcCC-CCCcEEEEEecc-hhhhh--------hcCCCCeeecCCCChHHHHHHH
Q 042791 116 GKKNFLVLDDVWDGDYN--KWQPFFRCLKNG-LHGSKILVTTRN-ESVAR--------MMGSTDSISIKQLAEEECWSLF 183 (761)
Q Consensus 116 ~~~~LlvlDd~~~~~~~--~~~~l~~~~~~~-~~~~~iiiTtr~-~~~~~--------~~~~~~~~~l~~l~~~ea~~l~ 183 (761)
+ .-+|||||++..... ....+...+... ..+..+|+|+.. +.... .+.....+++.+.+.++..+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 238899999652211 112233333221 124457777764 22111 1222346899999999999999
Q ss_pred HHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 184 KQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
.+.+.... ....+++...|++.+.|..-.+.-+
T Consensus 278 ~~~~~~~~----~~l~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 278 QKKAEEEG----LELPDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred HHHHHHcC----CCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 99875432 2334667888899888887655443
No 137
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.27 E-value=1.9e-05 Score=84.81 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=95.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccC--CeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIK 115 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f--~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 115 (761)
...++|+|++|+|||+|++++++ .....+ ..++|+++. ++...+...+... ..+. +.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~----~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TMEE----FKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHHh
Confidence 45689999999999999999998 454443 346677443 3333444443211 1122 233333
Q ss_pred CceEEEEEeCCCCCCcc--CchhHHHhhcC-CCCCcEEEEEecch--hh-------hhhcCCCCeeecCCCChHHHHHHH
Q 042791 116 GKKNFLVLDDVWDGDYN--KWQPFFRCLKN-GLHGSKILVTTRNE--SV-------ARMMGSTDSISIKQLAEEECWSLF 183 (761)
Q Consensus 116 ~~~~LlvlDd~~~~~~~--~~~~l~~~~~~-~~~~~~iiiTtr~~--~~-------~~~~~~~~~~~l~~l~~~ea~~l~ 183 (761)
+.-+|||||++..... ....+...+.. ...+..+|+|+... .+ ...+.....+++++.+.++..+++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 2348999999652211 12233332221 11234477777642 11 112233357999999999999999
Q ss_pred HHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 184 KQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
.+.+... .....++++..|++.+.|....+.-+
T Consensus 290 ~~~~~~~----~~~l~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 290 KKKAEEE----GIDLPDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHHHc----CCCCCHHHHHHHHcCcCCCHHHHHHH
Confidence 9987542 12344567889999999887655433
No 138
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.27 E-value=1.2e-05 Score=79.73 Aligned_cols=160 Identities=13% Similarity=0.110 Sum_probs=81.5
Q ss_pred ceecccchHHHHHHHHhcC---------CccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc--CCeeEEEEecCCC
Q 042791 12 EVCGRVDEKNELLSKLLCE---------SSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSNTF 80 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~~~---------~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~--f~~~~~v~~~~~~ 80 (761)
+++|.+...+++.+..... .-...+....++++|++|+||||+|+.+++. +... .....++.+..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~--l~~~~~~~~~~~v~~~~-- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKL--FKEMNVLSKGHLIEVER-- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHH--HHhcCcccCCceEEecH--
Confidence 4778766666655332110 0000234567889999999999999999873 2211 11111222211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCC--------ccCchhHHHhhcCCCCCcEEEE
Q 042791 81 DQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGD--------YNKWQPFFRCLKNGLHGSKILV 152 (761)
Q Consensus 81 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~--------~~~~~~l~~~~~~~~~~~~iii 152 (761)
.++. ...-. .......+.+... ..-+|++|+++.-. .+.++.+...+........+|+
T Consensus 83 --~~l~----~~~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vil 148 (261)
T TIGR02881 83 --ADLV----GEYIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLIL 148 (261)
T ss_pred --HHhh----hhhcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEe
Confidence 1111 11100 0111112222222 23488999996521 1233445554544433345556
Q ss_pred Eecchhhh------hhc-CC-CCeeecCCCChHHHHHHHHHHhhC
Q 042791 153 TTRNESVA------RMM-GS-TDSISIKQLAEEECWSLFKQLAFF 189 (761)
Q Consensus 153 Ttr~~~~~------~~~-~~-~~~~~l~~l~~~ea~~l~~~~~~~ 189 (761)
++...... +.+ .. ...+++++++.+|..+++.+.+..
T Consensus 149 a~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 149 AGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred cCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 65432221 111 11 346899999999999999987743
No 139
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.27 E-value=2.9e-05 Score=82.50 Aligned_cols=162 Identities=15% Similarity=0.141 Sum_probs=96.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccC--CeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIK 115 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f--~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 115 (761)
...++|+|++|+|||+|++++++ .+...+ ..+.|++. .++...+...+... ..+. +.+..+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 34589999999999999999998 444433 35777743 44555555544321 1222 223333
Q ss_pred CceEEEEEeCCCCCC-cc-CchhHHHhhcC-CCCCcEEEEEec-chhhh----h----hcCCCCeeecCCCChHHHHHHH
Q 042791 116 GKKNFLVLDDVWDGD-YN-KWQPFFRCLKN-GLHGSKILVTTR-NESVA----R----MMGSTDSISIKQLAEEECWSLF 183 (761)
Q Consensus 116 ~~~~LlvlDd~~~~~-~~-~~~~l~~~~~~-~~~~~~iiiTtr-~~~~~----~----~~~~~~~~~l~~l~~~ea~~l~ 183 (761)
...-++++||++... .. ....+...+.. ...+..||+|+. .+.-. . .+.....+++++.+.+...+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 344589999996421 11 11223332221 112445888874 32211 1 1223457899999999999999
Q ss_pred HHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 184 KQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
.+.+.... ....++++..|++.+.|....+.-+
T Consensus 273 ~~~~~~~~----~~l~~ev~~~Ia~~~~~~~R~L~g~ 305 (440)
T PRK14088 273 RKMLEIEH----GELPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_pred HHHHHhcC----CCCCHHHHHHHHhccccCHHHHHHH
Confidence 98875321 2234567888888888876555444
No 140
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.26 E-value=4.8e-05 Score=80.56 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=90.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGK 117 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 117 (761)
...++|+|++|+|||+|++++++ .+......++|++ ...+...+...+... . .+.++...+ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 35688999999999999999998 4444445567774 334444444444321 1 122333333 3
Q ss_pred eEEEEEeCCCCCCc--cCchhHHHhhcC-CCCCcEEEEEecc-hh----h----hhhcCCCCeeecCCCChHHHHHHHHH
Q 042791 118 KNFLVLDDVWDGDY--NKWQPFFRCLKN-GLHGSKILVTTRN-ES----V----ARMMGSTDSISIKQLAEEECWSLFKQ 185 (761)
Q Consensus 118 ~~LlvlDd~~~~~~--~~~~~l~~~~~~-~~~~~~iiiTtr~-~~----~----~~~~~~~~~~~l~~l~~~ea~~l~~~ 185 (761)
.-++++||++.... ...+.+...+.. ...+..||+|+.. +. + ...+.....+++.+++.++..+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 34888999965321 122233332221 1124568888754 22 1 11122235789999999999999998
Q ss_pred HhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 186 LAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
.+.... ....+++...|+..+.|.-
T Consensus 283 k~~~~~----~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 283 KAEALS----IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHcC----CCCCHHHHHHHHHhcCCCH
Confidence 875432 1233455666777666543
No 141
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.26 E-value=8.7e-06 Score=86.36 Aligned_cols=170 Identities=11% Similarity=0.138 Sum_probs=93.7
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-----CCeeEE
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-----FEKVIW 73 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-----f~~~~~ 73 (761)
|.+.-+++.|.+.+++++.+.+..+-.+ +-..++-++++|++|+|||++|+++++ .+... .....|
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~--eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVAN--SLAQRIGAETGDKSYF 254 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHH--hhccccccccCCceeE
Confidence 4555677888999999998876432100 123356789999999999999999998 44332 123445
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-hCCceEEEEEeCCCCCC-------ccC-----chhHHHh
Q 042791 74 VCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGD-------YNK-----WQPFFRC 140 (761)
Q Consensus 74 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~-------~~~-----~~~l~~~ 140 (761)
+.+... ++ +....... ......+.+..++. ..+.+++|+||+++..- ... ...++..
T Consensus 255 l~v~~~----eL----l~kyvGet--e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 255 LNIKGP----EL----LNKYVGET--ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred Eeccch----hh----cccccchH--HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 543321 11 11100000 00111122222222 13568999999996411 011 1233333
Q ss_pred hcCCC--CCcEEEEEecchhhhh-hc----CCCCeeecCCCChHHHHHHHHHHh
Q 042791 141 LKNGL--HGSKILVTTRNESVAR-MM----GSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 141 ~~~~~--~~~~iiiTtr~~~~~~-~~----~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
+.... .+..||.||......+ .+ ..+..++++..+.+++.++|..+.
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 33321 2344555554433222 11 224578999999999999999986
No 142
>CHL00181 cbbX CbbX; Provisional
Probab=98.24 E-value=4.4e-05 Score=76.01 Aligned_cols=134 Identities=12% Similarity=0.131 Sum_probs=73.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhc-cC-CeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKR-NF-EKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIK 115 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~-~f-~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 115 (761)
...+.++|++|+||||+|+.+++. ... .+ ...-|+.++ ..++. ..+.... .......+.+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~--~~~~g~~~~~~~~~v~----~~~l~----~~~~g~~-----~~~~~~~l~~a-- 121 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADI--LYKLGYIKKGHLLTVT----RDDLV----GQYIGHT-----APKTKEVLKKA-- 121 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHHcCCCCCCceEEec----HHHHH----HHHhccc-----hHHHHHHHHHc--
Confidence 345789999999999999999873 221 11 111133332 22222 2221111 11122222222
Q ss_pred CceEEEEEeCCCCC---------CccCchhHHHhhcCCCCCcEEEEEecchhhhh------hc--CCCCeeecCCCChHH
Q 042791 116 GKKNFLVLDDVWDG---------DYNKWQPFFRCLKNGLHGSKILVTTRNESVAR------MM--GSTDSISIKQLAEEE 178 (761)
Q Consensus 116 ~~~~LlvlDd~~~~---------~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~------~~--~~~~~~~l~~l~~~e 178 (761)
..-+|+||+++.- ..+..+.+...+.......+||+++....+.. .+ .....+++++++.+|
T Consensus 122 -~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 122 -MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred -cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 2349999999642 12233444555555444566777765433211 11 124579999999999
Q ss_pred HHHHHHHHhhC
Q 042791 179 CWSLFKQLAFF 189 (761)
Q Consensus 179 a~~l~~~~~~~ 189 (761)
..+++...+..
T Consensus 201 l~~I~~~~l~~ 211 (287)
T CHL00181 201 LLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 143
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.24 E-value=8.2e-06 Score=88.98 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=43.1
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
.|..-++++|.++.++++..++....-+ ....++++|+|++|+||||+++.++..
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3455567999999999999998754321 223467999999999999999999973
No 144
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=3e-05 Score=78.57 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=69.1
Q ss_pred CceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecch-hhhhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCC
Q 042791 116 GKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSF 193 (761)
Q Consensus 116 ~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~-~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 193 (761)
+.+-++|||+++..+....+.++..+..-..++.+|++|.+. .+.+. ......+.+.+++.+++.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 344466789999888888888998888766667777777664 44433 234678999999999999999875310
Q ss_pred CCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 194 EDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 194 ~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
...+.+..++..++|.|.....+
T Consensus 181 ----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----CChHHHHHHHHHcCCCHHHHHHH
Confidence 12234567788999999755444
No 145
>PRK06620 hypothetical protein; Validated
Probab=98.23 E-value=1.1e-05 Score=76.64 Aligned_cols=136 Identities=14% Similarity=0.072 Sum_probs=79.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCce
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKK 118 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (761)
+.+.|||++|+|||+|++++++. .. ..++.... .. + +..+ ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~--~~-----~~~~~~~~------~~-----------------~-------~~~~-~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL--SN-----AYIIKDIF------FN-----------------E-------EILE-KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc--cC-----CEEcchhh------hc-----------------h-------hHHh-cC
Confidence 67899999999999999998863 11 12221000 00 0 0011 22
Q ss_pred EEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchh-------hhhhcCCCCeeecCCCChHHHHHHHHHHhhCCC
Q 042791 119 NFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNES-------VARMMGSTDSISIKQLAEEECWSLFKQLAFFGC 191 (761)
Q Consensus 119 ~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~-------~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~ 191 (761)
-++++||++......+..+...+.. .|..+|+|++.+. +...+.....++++++++++..+++.+.+...
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e--~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~- 163 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINE--KQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS- 163 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHh--cCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-
Confidence 4788899963211111222222222 3567899987522 22223334589999999999998988876432
Q ss_pred CCCCCCchhHHHHHHHHhcCCCchhHH
Q 042791 192 SFEDCEKLEPIGRKIACKCKGLPLAAK 218 (761)
Q Consensus 192 ~~~~~~~~~~~~~~i~~~~~g~Plal~ 218 (761)
.....+++++.|++.+.|.--.+.
T Consensus 164 ---~l~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 164 ---SVTISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred ---CCCCCHHHHHHHHHHccCCHHHHH
Confidence 123445677888888877554443
No 146
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=3.5e-05 Score=75.14 Aligned_cols=182 Identities=15% Similarity=0.145 Sum_probs=104.0
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
|-+.-++.=|-+++++++.+.+.-+-.+ +-+.++=|.+||+||.|||-||++|++ +.... |+.+..
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~At-----FIrvvg 218 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDAT-----FIRVVG 218 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCce-----EEEecc
Confidence 4455556667899999999886654322 124577889999999999999999998 33333 333322
Q ss_pred CCCHHHHHHHHHHH-hcCCCCCCCcHHHHHHHHHHH-hCCceEEEEEeCCCC-----------CCccCchhHH---Hhhc
Q 042791 79 TFDQIRIAKAIIEG-LGESASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWD-----------GDYNKWQPFF---RCLK 142 (761)
Q Consensus 79 ~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~-----------~~~~~~~~l~---~~~~ 142 (761)
. ++.++ ++.. ..+...+-+. -.+.+.+|++|++|. .+.+-...+. ..+.
T Consensus 219 S--------ElVqKYiGEG-------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlD 283 (406)
T COG1222 219 S--------ELVQKYIGEG-------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLD 283 (406)
T ss_pred H--------HHHHHHhccc-------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhcc
Confidence 1 12222 2221 1122222222 245789999999854 1222223333 3333
Q ss_pred CCC--CCcEEEEEecch-----hhhhhcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 143 NGL--HGSKILVTTRNE-----SVARMMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 143 ~~~--~~~~iiiTtr~~-----~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
.+. ...|||.+|.-. .+.+.-..+..++++.-+.+...++|.-|+..-.... .-. .+.+++.+.|.-
T Consensus 284 GFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~-dvd----~e~la~~~~g~s 357 (406)
T COG1222 284 GFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLAD-DVD----LELLARLTEGFS 357 (406)
T ss_pred CCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCcc-CcC----HHHHHHhcCCCc
Confidence 332 245788776543 3333223367899997788888888887764322211 112 345666666544
No 147
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.22 E-value=1.5e-05 Score=92.09 Aligned_cols=155 Identities=14% Similarity=0.134 Sum_probs=87.2
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC------C-eeEEEEecCCCCHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF------E-KVIWVCVSNTFDQI 83 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f------~-~~~~v~~~~~~~~~ 83 (761)
+.+|||+.+++++.+.|.... ...++++|++|+|||++|+.++. ++...+ . .++++.+ .
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~--~i~~~~~p~~l~~~~~~~l~~------~ 238 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQ--RIVNGDVPESLKNKRLLALDM------G 238 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHH--HHhccCCchhhcCCeEEEeeH------H
Confidence 569999999999999997532 34567999999999999999997 343221 1 1222321 1
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-C-CceEEEEEeCCCCCC----cc-C--chhHHHhhcCCCCCcEEEEEe
Q 042791 84 RIAKAIIEGLGESASGLNEFQSLMSRIQSSI-K-GKKNFLVLDDVWDGD----YN-K--WQPFFRCLKNGLHGSKILVTT 154 (761)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~-~~~~LlvlDd~~~~~----~~-~--~~~l~~~~~~~~~~~~iiiTt 154 (761)
.+. .. .....+.+.....+...+ + +.+.+|+||+++... .. . ...++..... ...-++|.+|
T Consensus 239 ~l~-------a~-~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaT 309 (852)
T TIGR03346 239 ALI-------AG-AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGAT 309 (852)
T ss_pred HHh-------hc-chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeC
Confidence 111 00 011112333333333332 2 468999999996421 00 1 1112211111 1134566666
Q ss_pred cchhhhhh-------cCCCCeeecCCCChHHHHHHHHHHhh
Q 042791 155 RNESVARM-------MGSTDSISIKQLAEEECWSLFKQLAF 188 (761)
Q Consensus 155 r~~~~~~~-------~~~~~~~~l~~l~~~ea~~l~~~~~~ 188 (761)
..+..... ......+.++..+.++..+++.....
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHH
Confidence 65443211 12245688999999999999887643
No 148
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.21 E-value=5.1e-08 Score=95.92 Aligned_cols=111 Identities=15% Similarity=0.115 Sum_probs=75.5
Q ss_pred CceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcC-Cc--
Q 042791 397 DRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELG-IE-- 473 (761)
Q Consensus 397 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~-i~-- 473 (761)
..|+.|.+.++. .....-...+...+++++.|++.+|.-.. +..+..+ -..+++|++|++..|. ++
T Consensus 138 g~lk~LSlrG~r----~v~~sslrt~~~~CpnIehL~l~gc~~iT----d~s~~sl---a~~C~~l~~l~L~~c~~iT~~ 206 (483)
T KOG4341|consen 138 GFLKELSLRGCR----AVGDSSLRTFASNCPNIEHLALYGCKKIT----DSSLLSL---ARYCRKLRHLNLHSCSSITDV 206 (483)
T ss_pred cccccccccccc----cCCcchhhHHhhhCCchhhhhhhcceecc----HHHHHHH---HHhcchhhhhhhcccchhHHH
Confidence 468899998886 23334455667899999999999875322 1111112 2468999999999965 55
Q ss_pred cCchhhhccCCCcEEecCCccCccc--ccccccccccccEeecCCcc
Q 042791 474 RLPETLCELYNLQKLDIRRCRNLRE--LPAGIGKLMNMRTLLNGETY 518 (761)
Q Consensus 474 ~lp~~~~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~l~~~~ 518 (761)
.+-.....+++|++|+++-|..+.. +..-..++++|+.+.+.+|.
T Consensus 207 ~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 207 SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL 253 (483)
T ss_pred HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc
Confidence 2223446789999999999886654 22334677778888777774
No 149
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.20 E-value=1.7e-05 Score=89.01 Aligned_cols=155 Identities=16% Similarity=0.222 Sum_probs=88.1
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-----C-CeeEEEEecCCCCHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-----F-EKVIWVCVSNTFDQIR 84 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-----f-~~~~~v~~~~~~~~~~ 84 (761)
++++||+++++++.+.|.... ...+.++|++|+|||++|+.++. ++... + +..+|. .+...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~--~i~~~~vP~~l~~~~~~~-----l~~~~ 252 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAW--RIVQGDVPEVMADCTIYS-----LDIGS 252 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHH--HHHhcCCCchhcCCeEEe-----ccHHH
Confidence 458999999999999998642 24567999999999999999997 33211 1 222232 11111
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-CCceEEEEEeCCCCC------C--ccCchhHHHhhcCCCCCcEEEEEec
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSSI-KGKKNFLVLDDVWDG------D--YNKWQPFFRCLKNGLHGSKILVTTR 155 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDd~~~~------~--~~~~~~l~~~~~~~~~~~~iiiTtr 155 (761)
+ +.. .....+.+.....+.+.+ +..+.+|+||+++.- . ......++..+... ...++|-+|.
T Consensus 253 l-------laG-~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt 323 (758)
T PRK11034 253 L-------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTT 323 (758)
T ss_pred H-------hcc-cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCC
Confidence 1 111 111223333333333333 345679999999641 0 11122222222221 1345665555
Q ss_pred chhhhhh-------cCCCCeeecCCCChHHHHHHHHHHh
Q 042791 156 NESVARM-------MGSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 156 ~~~~~~~-------~~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
.+++... ......++++..+.+++.+++....
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 4433211 1234589999999999999998754
No 150
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.20 E-value=2.2e-05 Score=81.70 Aligned_cols=184 Identities=12% Similarity=0.088 Sum_probs=99.7
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEec
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 77 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (761)
.|.+.-+++.|.+...+++.+.+..+-.. +-..++-+.++|++|+|||++|+++++ .....| +.+.
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~--~l~~~f-----i~i~ 211 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH--HTTATF-----IRVV 211 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE-----EEEe
Confidence 35556667889988888888776422110 123467899999999999999999997 333222 2211
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCC------c-----c---CchhHHHhhcC
Q 042791 78 NTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGD------Y-----N---KWQPFFRCLKN 143 (761)
Q Consensus 78 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~------~-----~---~~~~l~~~~~~ 143 (761)
. ..+... ..+. ....+.+.+.......+.+|++|+++... . . .+..++..+..
T Consensus 212 ~----s~l~~k---~~ge------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 212 G----SEFVQK---YLGE------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred h----HHHHHH---hcch------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 1 111111 1110 11112222223334578899999986410 0 0 01122222222
Q ss_pred --CCCCcEEEEEecchhhhhh-c----CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCC
Q 042791 144 --GLHGSKILVTTRNESVARM-M----GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGL 213 (761)
Q Consensus 144 --~~~~~~iiiTtr~~~~~~~-~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 213 (761)
...+..||+||......+. + .....+++...+.++..++|..+..+... .... ....+++.+.|.
T Consensus 279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l-~~dv----d~~~la~~t~g~ 350 (398)
T PTZ00454 279 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL-SEEV----DLEDFVSRPEKI 350 (398)
T ss_pred cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC-Cccc----CHHHHHHHcCCC
Confidence 1235567777775432221 1 23557899999999999999877643221 1111 134566666554
No 151
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.20 E-value=2.2e-05 Score=90.39 Aligned_cols=155 Identities=13% Similarity=0.143 Sum_probs=85.8
Q ss_pred CCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC-------CeeEEEEecCCCCH
Q 042791 10 EGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF-------EKVIWVCVSNTFDQ 82 (761)
Q Consensus 10 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f-------~~~~~v~~~~~~~~ 82 (761)
-++++||+.+++++++.|.... ...++++|++|+|||++|+.++. ++.... ..++++.++.-
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~--~i~~~~vp~~l~~~~~~~l~l~~l--- 245 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQ--RIINGEVPEGLKGRRVLALDMGAL--- 245 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHH--HhhcCCCchhhCCCEEEEEehhhh---
Confidence 3569999999999999997533 34677999999999999999998 442211 12233322221
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh--CCceEEEEEeCCCCCCc-----c--CchhHHHhhcCCCCCcEEEEE
Q 042791 83 IRIAKAIIEGLGESASGLNEFQSLMSRIQSSI--KGKKNFLVLDDVWDGDY-----N--KWQPFFRCLKNGLHGSKILVT 153 (761)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~~-----~--~~~~l~~~~~~~~~~~~iiiT 153 (761)
. . ......++++....+.+.+ ...+.++++|+++.... . ....++..... ...-++|-+
T Consensus 246 ---~-------a-g~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~-~g~l~~Iga 313 (857)
T PRK10865 246 ---V-------A-GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGA 313 (857)
T ss_pred ---h-------h-ccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-cCCCeEEEc
Confidence 0 0 0011112222222222221 24689999999965210 0 11122221111 123466666
Q ss_pred ecchhhhhh------c-CCCCeeecCCCChHHHHHHHHHHh
Q 042791 154 TRNESVARM------M-GSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 154 tr~~~~~~~------~-~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
|..++.... + .....+.+...+.++..+++....
T Consensus 314 Tt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 314 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 665543211 1 123467777779999999886654
No 152
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=1.3e-06 Score=64.33 Aligned_cols=58 Identities=29% Similarity=0.465 Sum_probs=45.5
Q ss_pred CcceEEeeccccccCCccccccccccc-cchhcccccCccccCCcCCccCch-hhhccCCCcEEecCCcc
Q 042791 427 ACLRALVISQFYISGSHHEANRIKEIP-ENVGKLIHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCR 494 (761)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~ 494 (761)
++|++|++++|.+. .+| ..|..+++|++|++++|.++.+|+ .|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~----------~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLT----------EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTES----------EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCC----------ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57888888865443 565 457788899999999888887764 67889999999998886
No 153
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=5.5e-08 Score=91.22 Aligned_cols=87 Identities=18% Similarity=0.236 Sum_probs=58.9
Q ss_pred CcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCc-cCchhhhccCCCcEEecCCccCcccccc--cc
Q 042791 427 ACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIE-RLPETLCELYNLQKLDIRRCRNLRELPA--GI 503 (761)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~ 503 (761)
..|+.|||+...++. ..+-.-++.|.+|+.|++.++.+. .+-..++.-.+|+.|+|+.|..+.+... -+
T Consensus 185 sRlq~lDLS~s~it~--------stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~ 256 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITV--------STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLL 256 (419)
T ss_pred hhhHHhhcchhheeH--------HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHH
Confidence 458888888654432 123333567888888888888776 4456677778888888888876654332 24
Q ss_pred cccccccEeecCCccccc
Q 042791 504 GKLMNMRTLLNGETYALK 521 (761)
Q Consensus 504 ~~l~~L~~L~l~~~~~~~ 521 (761)
.+++.|..|++++|....
T Consensus 257 ~scs~L~~LNlsWc~l~~ 274 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFT 274 (419)
T ss_pred HhhhhHhhcCchHhhccc
Confidence 678888888888885433
No 154
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.16 E-value=7.6e-06 Score=85.55 Aligned_cols=164 Identities=14% Similarity=0.114 Sum_probs=91.9
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
|.+.-.++.|.+++++++.+.+..+-.+ +-..++.|+++|++|+|||++|+++++ .....| +.+..+.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f---i~V~~se 252 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF---LRVVGSE 252 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE---EEEecch
Confidence 3344566789999999998877532111 123456788999999999999999998 444333 1121111
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCC------ccC--------chhHHHhhcC-
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGD------YNK--------WQPFFRCLKN- 143 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~------~~~--------~~~l~~~~~~- 143 (761)
+. ...... ....+...+.......+.+++||+++... ... +..++..+..
T Consensus 253 ------L~----~k~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 253 ------LI----QKYLGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF 317 (438)
T ss_pred ------hh----hhhcch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence 11 111000 01112222223334567899999985310 000 1112222222
Q ss_pred -CCCCcEEEEEecchhhhhh-c----CCCCeeecCCCChHHHHHHHHHHhhC
Q 042791 144 -GLHGSKILVTTRNESVARM-M----GSTDSISIKQLAEEECWSLFKQLAFF 189 (761)
Q Consensus 144 -~~~~~~iiiTtr~~~~~~~-~----~~~~~~~l~~l~~~ea~~l~~~~~~~ 189 (761)
...+.+||+||........ + .....+++...+.++..++|..++..
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 1235567777775433222 1 12457899999999999999987643
No 155
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.15 E-value=5.7e-05 Score=75.32 Aligned_cols=133 Identities=13% Similarity=0.142 Sum_probs=72.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcc-C-CeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCC
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRN-F-EKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKG 116 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f-~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 116 (761)
..+.++|++|+|||++|+.++. ..... + ..--|+.+.. .++ ...+.... .....+.+.+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~--~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~~-----~~~~~~~~~~a--- 120 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQ--ILHRLGYVRKGHLVSVTR----DDL----VGQYIGHT-----APKTKEILKRA--- 120 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHH--HHHHcCCcccceEEEecH----HHH----hHhhcccc-----hHHHHHHHHHc---
Confidence 3688999999999999988887 33221 1 1112333221 122 22221111 11222223222
Q ss_pred ceEEEEEeCCCCC---------CccCchhHHHhhcCCCCCcEEEEEecchhhhhh------c--CCCCeeecCCCChHHH
Q 042791 117 KKNFLVLDDVWDG---------DYNKWQPFFRCLKNGLHGSKILVTTRNESVARM------M--GSTDSISIKQLAEEEC 179 (761)
Q Consensus 117 ~~~LlvlDd~~~~---------~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~~------~--~~~~~~~l~~l~~~ea 179 (761)
..-+|+||+++.- ....++.+...+.....+.+||+++.....-.. + .....+++++++.+|.
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 2358899999632 112234455556555455667776654321111 0 1135799999999999
Q ss_pred HHHHHHHhhC
Q 042791 180 WSLFKQLAFF 189 (761)
Q Consensus 180 ~~l~~~~~~~ 189 (761)
.+++...+..
T Consensus 201 ~~I~~~~l~~ 210 (284)
T TIGR02880 201 LVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 156
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.15 E-value=6.4e-06 Score=72.36 Aligned_cols=96 Identities=22% Similarity=0.148 Sum_probs=53.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCC-ceE
Q 042791 41 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKG-KKN 119 (761)
Q Consensus 41 v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~-~~~ 119 (761)
|.|+|++|+||||+|+.+++ ... ..++.+......+ .........+...+.+.-.. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~--~l~---~~~~~i~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ--YLG---FPFIEIDGSELIS---------------SYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH--HTT---SEEEEEETTHHHT---------------SSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHh--hcc---ccccccccccccc---------------ccccccccccccccccccccccce
Confidence 57999999999999999998 332 1233443322110 01111112222222232223 379
Q ss_pred EEEEeCCCCCCccC-----------chhHHHhhcCCCC---CcEEEEEecc
Q 042791 120 FLVLDDVWDGDYNK-----------WQPFFRCLKNGLH---GSKILVTTRN 156 (761)
Q Consensus 120 LlvlDd~~~~~~~~-----------~~~l~~~~~~~~~---~~~iiiTtr~ 156 (761)
++++||++...... ...+...+..... +..||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999997744444 4555555555332 3466777665
No 157
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=3.9e-05 Score=78.39 Aligned_cols=162 Identities=10% Similarity=0.055 Sum_probs=94.5
Q ss_pred ceec-ccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-CCeeEEEEecCCCCHHHHHHHH
Q 042791 12 EVCG-RVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSNTFDQIRIAKAI 89 (761)
Q Consensus 12 ~~vg-r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~~~i 89 (761)
.++| .+...+.+.+.+... .-++...++|+.|+||||+|+.+++.. .... .... .++.. ...+.+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l-~c~~~~~~~---~cg~C----~~c~~~ 72 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSL-FCLERNGVE---PCGTC----TNCKRI 72 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHH-CCCCCCCCC---CCCcC----HHHHHH
Confidence 4566 666777787777643 236778999999999999999998721 1111 0000 00000 000000
Q ss_pred HHHhcC------CCCCCCcHHHHHHHHHHH----hCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc-hh
Q 042791 90 IEGLGE------SASGLNEFQSLMSRIQSS----IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ES 158 (761)
Q Consensus 90 ~~~l~~------~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~-~~ 158 (761)
...-.. ........+++.+.+... ..+.+-++|||+++..+....+.++..+..-...+.+|++|.+ ..
T Consensus 73 ~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 73 DSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 000000 000111222222222111 2345668999999887777788899888876667777777765 34
Q ss_pred hhhhc-CCCCeeecCCCChHHHHHHHHHH
Q 042791 159 VARMM-GSTDSISIKQLAEEECWSLFKQL 186 (761)
Q Consensus 159 ~~~~~-~~~~~~~l~~l~~~ea~~l~~~~ 186 (761)
+.+.+ .....+++.+++.++..+.+...
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 44432 34678999999999998888753
No 158
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.14 E-value=6.3e-06 Score=84.83 Aligned_cols=120 Identities=15% Similarity=0.176 Sum_probs=74.5
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAII 90 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 90 (761)
+++++.++.++.+...+... +.+.++|++|+|||++|++++........++.+.||.+....+..++.....
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45778888899998888643 4678999999999999999997322234567788999988877776653221
Q ss_pred HHhcCCCCCCCcH-HHHHHHHHHHh--CCceEEEEEeCCCCCCccC-chhHHHhhc
Q 042791 91 EGLGESASGLNEF-QSLMSRIQSSI--KGKKNFLVLDDVWDGDYNK-WQPFFRCLK 142 (761)
Q Consensus 91 ~~l~~~~~~~~~~-~~~~~~~~~~l--~~~~~LlvlDd~~~~~~~~-~~~l~~~~~ 142 (761)
. ........ .-..+.+..+. ..+++++|||++...+... +..+...+.
T Consensus 247 P----~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 P----NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred C----CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 1 10000000 11122222222 2468999999997754333 333444343
No 159
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.13 E-value=7.4e-06 Score=82.35 Aligned_cols=91 Identities=16% Similarity=0.092 Sum_probs=59.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCC--CHHHHHHHHHHHhcCCCCCCCcHHH------HHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF--DQIRIAKAIIEGLGESASGLNEFQS------LMS 108 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~------~~~ 108 (761)
+.+..+|+|++|+||||||+++++.... .+|+.++|+.+.+.. ...++++.+...+-....+.....+ ..+
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~-nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITT-NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHh-hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 4567889999999999999999984322 379999999988876 5667777765322222222221111 111
Q ss_pred HHHHH-hCCceEEEEEeCCCC
Q 042791 109 RIQSS-IKGKKNFLVLDDVWD 128 (761)
Q Consensus 109 ~~~~~-l~~~~~LlvlDd~~~ 128 (761)
..... -.+++++|++|++.+
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHH
Confidence 11121 257899999999943
No 160
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=0.00011 Score=73.80 Aligned_cols=96 Identities=10% Similarity=0.113 Sum_probs=69.7
Q ss_pred CceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc-hhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCC
Q 042791 116 GKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSF 193 (761)
Q Consensus 116 ~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 193 (761)
+++-++|||+++..+....+.++..+..-...+.+|++|.. ..+.+.+ .....+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 45679999999887777888888888876667777766664 4454443 346789999999999999887631
Q ss_pred CCCCchhHHHHHHHHhcCCCchhHHHHH
Q 042791 194 EDCEKLEPIGRKIACKCKGLPLAAKVIG 221 (761)
Q Consensus 194 ~~~~~~~~~~~~i~~~~~g~Plal~~~~ 221 (761)
...+.+..++..++|.|.....+.
T Consensus 186 ----~~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 ----VSERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ----CChHHHHHHHHHcCCCHHHHHHHh
Confidence 112236678899999998665443
No 161
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.08 E-value=6.8e-05 Score=80.76 Aligned_cols=160 Identities=13% Similarity=0.119 Sum_probs=94.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcc--CCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCC
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKG 116 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~--f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 116 (761)
..++|||..|+|||.|++++++ ..... ...++|++. .++...+...+... . .+.+++.+++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yita------eef~~el~~al~~~-----~----~~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----K----GDSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----c----HHHHHHHhhc
Confidence 3489999999999999999998 44432 245677743 44444444333211 1 1223333332
Q ss_pred ceEEEEEeCCCCCCc-cC-chhHHHhhcCC-CCCcEEEEEecch---------hhhhhcCCCCeeecCCCChHHHHHHHH
Q 042791 117 KKNFLVLDDVWDGDY-NK-WQPFFRCLKNG-LHGSKILVTTRNE---------SVARMMGSTDSISIKQLAEEECWSLFK 184 (761)
Q Consensus 117 ~~~LlvlDd~~~~~~-~~-~~~l~~~~~~~-~~~~~iiiTtr~~---------~~~~~~~~~~~~~l~~l~~~ea~~l~~ 184 (761)
.=+|||||++.... .. ...+...+... ..+..|||||... .+..-+.....+++.+.+.+...+++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 24788999965321 11 12333333221 1244588888752 122223345688999999999999999
Q ss_pred HHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 185 QLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
+.+.... .....++++-|++.+.+..-.|.-+
T Consensus 457 kka~~r~----l~l~~eVi~yLa~r~~rnvR~Lega 488 (617)
T PRK14086 457 KKAVQEQ----LNAPPEVLEFIASRISRNIRELEGA 488 (617)
T ss_pred HHHHhcC----CCCCHHHHHHHHHhccCCHHHHHHH
Confidence 8875432 2334567778888777665444433
No 162
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=6.3e-07 Score=95.43 Aligned_cols=84 Identities=26% Similarity=0.329 Sum_probs=43.2
Q ss_pred hhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcc
Q 042791 456 VGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRT 535 (761)
Q Consensus 456 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 535 (761)
++.+.+|.+|++.+|.|..+...+..+++|++|++++|. +..+.. +..++.|+.|++++|.+.. + ..+..+.+|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNLISD-I-SGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCcchh-c-cCCccchhhhc
Confidence 445556666666666665554445556666666666655 333322 4555556666666653322 1 12333455555
Q ss_pred cCceeecC
Q 042791 536 LDRFVVGG 543 (761)
Q Consensus 536 L~l~~~~~ 543 (761)
+++.++..
T Consensus 167 l~l~~n~i 174 (414)
T KOG0531|consen 167 LDLSYNRI 174 (414)
T ss_pred ccCCcchh
Confidence 55554443
No 163
>CHL00176 ftsH cell division protein; Validated
Probab=98.07 E-value=8e-05 Score=82.13 Aligned_cols=180 Identities=15% Similarity=0.148 Sum_probs=97.7
Q ss_pred CCCCceecccchHHHHHHHH---hcCCc---cCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCC
Q 042791 8 IDEGEVCGRVDEKNELLSKL---LCESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFD 81 (761)
Q Consensus 8 ~~~~~~vgr~~~~~~l~~~l---~~~~~---~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~ 81 (761)
+.-++++|.++..+++.+.+ ..+.. -+...++-|+++|++|+|||++|++++. ..... |+.++
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~--e~~~p-----~i~is---- 248 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG--EAEVP-----FFSIS---- 248 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC-----eeecc----
Confidence 44566888777666655543 32211 0122356789999999999999999997 33222 22221
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCC----------ccC----chhHHHhhcC--CC
Q 042791 82 QIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGD----------YNK----WQPFFRCLKN--GL 145 (761)
Q Consensus 82 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~----------~~~----~~~l~~~~~~--~~ 145 (761)
..++.... .+ .........+.......+.+|+|||++... ... +..++..+.. ..
T Consensus 249 ~s~f~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 249 GSEFVEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHHHHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 11111100 00 011222333444445678999999996421 011 2222222222 22
Q ss_pred CCcEEEEEecchhhhh-hc----CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCC
Q 042791 146 HGSKILVTTRNESVAR-MM----GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKG 212 (761)
Q Consensus 146 ~~~~iiiTtr~~~~~~-~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 212 (761)
.+..||.||......+ .+ .....+.++..+.++..+++..++.... .........+++.+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-----~~~d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-----LSPDVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-----cchhHHHHHHHhcCCC
Confidence 3455666665533222 11 2346789999999999999998874311 1122335677777777
No 164
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.1e-07 Score=87.45 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=104.3
Q ss_pred cccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCC-CC--CchhhhhcCCcEEEeecC
Q 042791 583 QLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGN-IF--PKWLTLLTNLRNLTLASC 659 (761)
Q Consensus 583 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~--p~~~~~l~~L~~L~l~~~ 659 (761)
.++.|.+|+.|++..+.+ ++.+...+....+|+.|+++.+.+- .. .-.+.+|+.|.+|++++|
T Consensus 205 iLs~C~kLk~lSlEg~~L--------------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc 270 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRL--------------DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWC 270 (419)
T ss_pred HHHHHHhhhhcccccccc--------------CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHh
Confidence 466788888888877763 4556666777788999999888652 21 224568999999999999
Q ss_pred CCCCCCC--CCCCCC--cceEEeccCcCceEeCccccCCCcccccCCccceeeccccccccc-----CCCCCccceEeee
Q 042791 660 VNCEHLP--PLGKLP--LEKLVIDDLKSVKSVGNEFLGIEENIIAFPKLKYLKIWATEELEE-----TTDIPRLSSLTIW 730 (761)
Q Consensus 660 ~~~~~~~--~~~~lp--l~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~l~~L~~L~l~ 730 (761)
...+... .+..+. +..+++++++.--.. +. +......||+|.+|+|++|..+.. +..++.|++|.++
T Consensus 271 ~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~-sh---~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 271 FLFTEKVTVAVAHISETLTQLNLSGYRRNLQK-SH---LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred hccchhhhHHHhhhchhhhhhhhhhhHhhhhh-hH---HHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 6544321 112222 555555554321110 11 222235799999999999877665 5678999999999
Q ss_pred cCCCCc-CCCcccCCCCCccEEEEecCC
Q 042791 731 YCPKLK-VLPDYLLQTTALQELRIWGCP 757 (761)
Q Consensus 731 ~~~~l~-~l~~~l~~l~~L~~L~l~~c~ 757 (761)
.|..+. ..--.+...|+|.+|++.+|-
T Consensus 347 RCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 347 RCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhcCCChHHeeeeccCcceEEEEecccc
Confidence 997552 111235678999999998884
No 165
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.04 E-value=6.6e-05 Score=81.76 Aligned_cols=191 Identities=14% Similarity=0.094 Sum_probs=99.6
Q ss_pred cCCCCCCceecccchHHHHHHHHh---cCC---ccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLL---CES---SEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~---~~~---~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
.|.+.-++++|.++..+++.+.+. .+. ..+...++-+.++|++|+|||++|++++. ..... |+.++
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~--~~~~~-----~~~i~- 120 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAG--EAGVP-----FFSIS- 120 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCC-----eeecc-
Confidence 345566678898777666655433 110 00123356689999999999999999997 32222 22221
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCc----------c----CchhHHHhhcC-
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDY----------N----KWQPFFRCLKN- 143 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~----------~----~~~~l~~~~~~- 143 (761)
..++.... .+. ....+...+.......+.+|+|||++.... . ....++..+..
T Consensus 121 ---~~~~~~~~---~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~ 188 (495)
T TIGR01241 121 ---GSDFVEMF---VGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 188 (495)
T ss_pred ---HHHHHHHH---hcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc
Confidence 11211110 110 112222333334445678999999965210 0 11122222222
Q ss_pred -CCCCcEEEEEecchh-----hhhhcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCC-chh
Q 042791 144 -GLHGSKILVTTRNES-----VARMMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGL-PLA 216 (761)
Q Consensus 144 -~~~~~~iiiTtr~~~-----~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pla 216 (761)
...+..||.||.... +.+.-.....++++..+.++..+++..++...... .......+++.+.|. +-.
T Consensus 189 ~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-----~~~~l~~la~~t~G~sgad 263 (495)
T TIGR01241 189 GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-----PDVDLKAVARRTPGFSGAD 263 (495)
T ss_pred cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-----cchhHHHHHHhCCCCCHHH
Confidence 122344565665432 22111235678999999999999998876432111 112245777777763 344
Q ss_pred HHHH
Q 042791 217 AKVI 220 (761)
Q Consensus 217 l~~~ 220 (761)
|..+
T Consensus 264 l~~l 267 (495)
T TIGR01241 264 LANL 267 (495)
T ss_pred HHHH
Confidence 4333
No 166
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.00021 Score=71.85 Aligned_cols=172 Identities=10% Similarity=0.031 Sum_probs=102.5
Q ss_pred HHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc--CC-ee---E----EEEecCCCCHHHHHHHHH
Q 042791 21 NELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN--FE-KV---I----WVCVSNTFDQIRIAKAII 90 (761)
Q Consensus 21 ~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~--f~-~~---~----~v~~~~~~~~~~~~~~i~ 90 (761)
+.+.+.+... .-++...++|+.|+||+++|+++++- +-.. .. .. + ++..+.+++...
T Consensus 12 ~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~--llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~------ 78 (325)
T PRK06871 12 QQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQW--LMCQTPQGDQPCGQCHSCHLFQAGNHPDFHI------ 78 (325)
T ss_pred HHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHH--HcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE------
Confidence 4455555532 23678889999999999999999972 2111 00 00 0 000011111100
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc-hhhhhh-c
Q 042791 91 EGLGESASGLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVARM-M 163 (761)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~-~~~~~~-~ 163 (761)
+..........+++.+ +.+.+ .+++-++|+|+++.......+.++..+..-...+.+|++|.. ..+.+. .
T Consensus 79 --i~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 79 --LEPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred --EccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH
Confidence 0000011112333222 22222 355668899999888888888999988887667777777665 455544 2
Q ss_pred CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhH
Q 042791 164 GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAA 217 (761)
Q Consensus 164 ~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 217 (761)
.....+.+.+++++++.+.+..... .....+...+..++|.|...
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~---------~~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSS---------AEISEILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhc---------cChHHHHHHHHHcCCCHHHH
Confidence 3467899999999999999987541 11123566778899999633
No 167
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.02 E-value=2.9e-05 Score=69.32 Aligned_cols=87 Identities=20% Similarity=0.150 Sum_probs=48.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCc-
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGK- 117 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~- 117 (761)
+.+.|.|++|+||||+++.++. ........++++.............. .....................+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 5789999999999999999998 34333334666655543322222111 111111111222222333343444333
Q ss_pred eEEEEEeCCCCC
Q 042791 118 KNFLVLDDVWDG 129 (761)
Q Consensus 118 ~~LlvlDd~~~~ 129 (761)
..++++|+++..
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 489999999664
No 168
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.02 E-value=0.00026 Score=72.04 Aligned_cols=205 Identities=14% Similarity=0.131 Sum_probs=124.4
Q ss_pred ccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHH-HHHhcChhhhccCCeeEEEEecCCC---CHHHHHHHHHH
Q 042791 16 RVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLA-QLAYNNDEVKRNFEKVIWVCVSNTF---DQIRIAKAIIE 91 (761)
Q Consensus 16 r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla-~~~~~~~~~~~~f~~~~~v~~~~~~---~~~~~~~~i~~ 91 (761)
|.+.+++|..||.... -..|+|+||-|+||+.|+ .++..+ .+.+++++|.+.. +...+...++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~------r~~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKD------RKNVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhC------CCCEEEEEChHhhhccChHHHHHHHHH
Confidence 6788999999998544 358899999999999999 777753 2337888875433 34455666666
Q ss_pred HhcC-----------------------CCCCC-CcHHH-H-------HHHHHH-------------------Hh---CCc
Q 042791 92 GLGE-----------------------SASGL-NEFQS-L-------MSRIQS-------------------SI---KGK 117 (761)
Q Consensus 92 ~l~~-----------------------~~~~~-~~~~~-~-------~~~~~~-------------------~l---~~~ 117 (761)
++|- ..... ...+. + ...++. ++ ...
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 6542 11110 11111 1 111111 01 123
Q ss_pred eEEEEEeCCCCCCcc------CchhHHHhhcCCCCCcEEEEEecchhh----hhhcC--CCCeeecCCCChHHHHHHHHH
Q 042791 118 KNFLVLDDVWDGDYN------KWQPFFRCLKNGLHGSKILVTTRNESV----ARMMG--STDSISIKQLAEEECWSLFKQ 185 (761)
Q Consensus 118 ~~LlvlDd~~~~~~~------~~~~l~~~~~~~~~~~~iiiTtr~~~~----~~~~~--~~~~~~l~~l~~~ea~~l~~~ 185 (761)
+.+||||++..-... .+..+...+-. .+=..||++|-+... .+.+. ....+.+.-.+.+.|.++...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 679999999542111 11111111211 123468888776443 33332 356788999999999999999
Q ss_pred HhhCCCCCC-----------CC-----CchhHHHHHHHHhcCCCchhHHHHHHHhhCCCCHHHH
Q 042791 186 LAFFGCSFE-----------DC-----EKLEPIGRKIACKCKGLPLAAKVIGNLLRSKSTVKEW 233 (761)
Q Consensus 186 ~~~~~~~~~-----------~~-----~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~ 233 (761)
+........ .. ....+.....++..||--.-|..+++.++...++++-
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~A 291 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEA 291 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHH
Confidence 875431110 00 1244456778889999999999999999988655443
No 169
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.99 E-value=1.8e-05 Score=80.13 Aligned_cols=90 Identities=14% Similarity=0.076 Sum_probs=60.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhh-ccCCeeEEEEecCC--CCHHHHHHHHHHHhcCCCCCCCcH------HHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIWVCVSNT--FDQIRIAKAIIEGLGESASGLNEF------QSLM 107 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~-~~f~~~~~v~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~ 107 (761)
..+.++|+|++|+|||||++.+++. +. .+|+..+|+.+.++ ....++++.+...+-....+.... ....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~--I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQA--ITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHh--hcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 4567899999999999999999983 33 35888889988766 578888888854443222222111 1112
Q ss_pred HHHHHH-hCCceEEEEEeCCCC
Q 042791 108 SRIQSS-IKGKKNFLVLDDVWD 128 (761)
Q Consensus 108 ~~~~~~-l~~~~~LlvlDd~~~ 128 (761)
+..... -.+++++|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 222222 257899999999944
No 170
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.97 E-value=8.9e-05 Score=67.05 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=79.7
Q ss_pred cccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhc------------------cCCeeEEEEe
Q 042791 15 GRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR------------------NFEKVIWVCV 76 (761)
Q Consensus 15 gr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~------------------~f~~~~~v~~ 76 (761)
|.++..+.+.+.+...+ -++.+.++|+.|+||+++|.++++...-.. .+.-+.|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 55667777777776433 367889999999999999999987311111 1222333322
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEE
Q 042791 77 SNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKIL 151 (761)
Q Consensus 77 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~ii 151 (761)
... ......+++. .+.+.+ .+..-++|||+++......+.+++..+......+++|
T Consensus 76 ~~~------------------~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKK------------------KKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTS------------------SSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred ccc------------------cchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 211 0011222222 233222 2456799999999888888999999999887788888
Q ss_pred EEecchh-hhhhc-CCCCeeecCCCC
Q 042791 152 VTTRNES-VARMM-GSTDSISIKQLA 175 (761)
Q Consensus 152 iTtr~~~-~~~~~-~~~~~~~l~~l~ 175 (761)
++|++.. +.+.. .....+.+.++|
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 8888743 44332 345566666654
No 171
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.95 E-value=0.00013 Score=74.54 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=83.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCC--eeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFE--KVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSI 114 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~--~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 114 (761)
....++|||+.|.|||.|++++.+ ....... .++|+ +.+.+....+..+.. ...+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~------~se~f~~~~v~a~~~---------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYL------TSEDFTNDFVKALRD---------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEec------cHHHHHHHHHHHHHh---------hhHHHHHHhh
Confidence 467899999999999999999998 5555554 45555 444455555544432 1233344444
Q ss_pred CCceEEEEEeCCCC--CCccCchhHHHhhcC-CCCCcEEEEEecch---------hhhhhcCCCCeeecCCCChHHHHHH
Q 042791 115 KGKKNFLVLDDVWD--GDYNKWQPFFRCLKN-GLHGSKILVTTRNE---------SVARMMGSTDSISIKQLAEEECWSL 182 (761)
Q Consensus 115 ~~~~~LlvlDd~~~--~~~~~~~~l~~~~~~-~~~~~~iiiTtr~~---------~~~~~~~~~~~~~l~~l~~~ea~~l 182 (761)
.-=++++||++- ........+...+.. ...|..||+|++.. .+...+.....+++.+.+.+....+
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 334889999965 211123333333332 11244799998641 2222344456899999999999999
Q ss_pred HHHHhhC
Q 042791 183 FKQLAFF 189 (761)
Q Consensus 183 ~~~~~~~ 189 (761)
+.+.+..
T Consensus 253 L~kka~~ 259 (408)
T COG0593 253 LRKKAED 259 (408)
T ss_pred HHHHHHh
Confidence 9997643
No 172
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.95 E-value=0.00018 Score=66.11 Aligned_cols=112 Identities=20% Similarity=0.254 Sum_probs=69.2
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (761)
++++-+.++|.+...+.+.+--..... +-..--|.+||.-|+|||+|++++.. .+...+-.. |.+.. +++
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrL--VEV~k----~dl 124 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRL--VEVDK----EDL 124 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeE--EEEcH----HHH
Confidence 345556689999999888865443322 23345688999999999999999998 565555443 32222 111
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCC-CCCccCchhHHHhhcCC
Q 042791 86 AKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVW-DGDYNKWQPFFRCLKNG 144 (761)
Q Consensus 86 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~-~~~~~~~~~l~~~~~~~ 144 (761)
.++..+.+.++. ..+|++++.||+- +.....+..+...+..+
T Consensus 125 ---------------~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ 167 (287)
T COG2607 125 ---------------ATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGG 167 (287)
T ss_pred ---------------hhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCC
Confidence 111111221211 3689999999983 23445667777766653
No 173
>PRK08116 hypothetical protein; Validated
Probab=97.94 E-value=3.7e-05 Score=75.77 Aligned_cols=103 Identities=25% Similarity=0.279 Sum_probs=58.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCce
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKK 118 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (761)
..++++|.+|+|||.||.++++ .+......++|++ ..+++..+........ .....+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 4588999999999999999998 4544445567774 4445555544433211 111122 223333223
Q ss_pred EEEEEeCCCCCCccCc--hhHHHhhcCC-CCCcEEEEEecc
Q 042791 119 NFLVLDDVWDGDYNKW--QPFFRCLKNG-LHGSKILVTTRN 156 (761)
Q Consensus 119 ~LlvlDd~~~~~~~~~--~~l~~~~~~~-~~~~~iiiTtr~ 156 (761)
||||||+.......| ..+...+... ..+..+||||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 899999954323333 2233333321 234558888875
No 174
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=3.2e-05 Score=78.81 Aligned_cols=61 Identities=25% Similarity=0.337 Sum_probs=27.6
Q ss_pred ccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCcccccccc
Q 042791 459 LIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMP 524 (761)
Q Consensus 459 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p 524 (761)
+.+++.|++++|.++.+|. -..+|+.|.+++|..+..+|..+ .++|++|++++|..+..+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 3444555555554444441 11235555555555444444422 2345555555553333333
No 175
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.93 E-value=0.0004 Score=74.00 Aligned_cols=205 Identities=15% Similarity=0.119 Sum_probs=128.4
Q ss_pred CCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChh---hh---ccCCeeEEEEecCCCCHH
Q 042791 10 EGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDE---VK---RNFEKVIWVCVSNTFDQI 83 (761)
Q Consensus 10 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~---~~---~~f~~~~~v~~~~~~~~~ 83 (761)
+..+-+|+.+...|..++...-+. +.....+.|.|-+|+|||..++.|++... .+ ..|+ ++.+++..-..+.
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 344678999999998887664432 23445899999999999999999998422 11 2343 4456666667889
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhC-----CceEEEEEeCCCCCCccCchhHHHhhcC-CCCCcEEEEEecc-
Q 042791 84 RIAKAIIEGLGESASGLNEFQSLMSRIQSSIK-----GKKNFLVLDDVWDGDYNKWQPFFRCLKN-GLHGSKILVTTRN- 156 (761)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~LlvlDd~~~~~~~~~~~l~~~~~~-~~~~~~iiiTtr~- 156 (761)
+++..|...+..... ......+.+..+.. .+.+++++|++|.--....+.+...+.| ..+++|++|.+-.
T Consensus 473 ~~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 473 EIYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 999999999986543 23344444544442 4578999999966434456777777777 4567876554332
Q ss_pred -----hhhhh-hc---CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 157 -----ESVAR-MM---GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 157 -----~~~~~-~~---~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
+.+.. .. -+...+...|.+..+..+++..+..+.+... ....+=+++.|+...|..-.|+.+.
T Consensus 550 TmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~-~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFE-NKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred cccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcc-hhHHHHHHHHHHhccccHHHHHHHH
Confidence 11111 11 1134577888999999999888765432211 1222223455555555544444444
No 176
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00036 Score=70.96 Aligned_cols=174 Identities=10% Similarity=0.038 Sum_probs=103.8
Q ss_pred HHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhc--cCCe----e----EEEEecCCCCHHHHHHHH
Q 042791 20 KNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR--NFEK----V----IWVCVSNTFDQIRIAKAI 89 (761)
Q Consensus 20 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~--~f~~----~----~~v~~~~~~~~~~~~~~i 89 (761)
-+++.+.+... .-++...++|+.|+||+++|.++++- +-. .-+. . .++..+.+++...
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~--LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~----- 78 (334)
T PRK07993 11 YEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRW--LMCQQPQGHKSCGHCRGCQLMQAGTHPDYYT----- 78 (334)
T ss_pred HHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHH--HcCCCCCCCCCCCCCHHHHHHHcCCCCCEEE-----
Confidence 34555655532 34688999999999999999998872 211 0000 0 0000011111110
Q ss_pred HHHhcCCC-CCCCcHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc-hhhhhh
Q 042791 90 IEGLGESA-SGLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVARM 162 (761)
Q Consensus 90 ~~~l~~~~-~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~-~~~~~~ 162 (761)
+.... ......+++.+ +.+.+ .+.+-++|||+++.......+.++..+..-..++.+|++|.+ ..+.+.
T Consensus 79 ---i~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 79 ---LTPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLAT 154 (334)
T ss_pred ---EecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHH
Confidence 00000 01122333322 22222 356679999999888778888999988886667766666665 555544
Q ss_pred -cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHH
Q 042791 163 -MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAK 218 (761)
Q Consensus 163 -~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 218 (761)
......+.+.+++++++.+.+..... ...+.+..++..++|.|....
T Consensus 155 IrSRCq~~~~~~~~~~~~~~~L~~~~~---------~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 155 LRSRCRLHYLAPPPEQYALTWLSREVT---------MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHhccccccCCCCCHHHHHHHHHHccC---------CCHHHHHHHHHHcCCCHHHHH
Confidence 34466889999999999998875321 112336778899999996443
No 177
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=6.4e-05 Score=79.76 Aligned_cols=166 Identities=16% Similarity=0.212 Sum_probs=97.9
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAII 90 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 90 (761)
++=+|.++-.+++.+++.-..--+.-+.+++.++||+|||||++|+.++. .+.+.|.. +.++.-.+..++-.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFfR---fSvGG~tDvAeIkG--- 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFFR---FSVGGMTDVAEIKG--- 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceEE---EeccccccHHhhcc---
Confidence 44578889999999887654432245678999999999999999999998 67766632 34444444444311
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCc----cCchhHHHhhc------------CCC-CCcEEEE-
Q 042791 91 EGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDY----NKWQPFFRCLK------------NGL-HGSKILV- 152 (761)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~----~~~~~l~~~~~------------~~~-~~~~iii- 152 (761)
.....-......+++.++.. +-.+.|+.||+||.... ++..+++..+. +.. .=|||++
T Consensus 483 ---HRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFi 558 (906)
T KOG2004|consen 483 ---HRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFI 558 (906)
T ss_pred ---cceeeeccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEE
Confidence 11111112233445545444 45677999999965211 12233333322 111 1245443
Q ss_pred -Eecc-hhhhh-hcCCCCeeecCCCChHHHHHHHHHHhh
Q 042791 153 -TTRN-ESVAR-MMGSTDSISIKQLAEEECWSLFKQLAF 188 (761)
Q Consensus 153 -Ttr~-~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~ 188 (761)
|... ..+.. ....-+.++|.+...+|-.++-.++..
T Consensus 559 cTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred EeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 3322 11211 123457899999999998888877754
No 178
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=7.1e-05 Score=79.85 Aligned_cols=165 Identities=17% Similarity=0.236 Sum_probs=97.8
Q ss_pred ceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHH
Q 042791 12 EVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIE 91 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~ 91 (761)
+=+|-++.-+++.++|.-..-...-+..++.++||||+|||+|++-+++ ...+.|-. +.++.-.+..++-
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEIR----- 393 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEIR----- 393 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHhc-----
Confidence 3468888889999887653321133457999999999999999999998 66666532 2344433444331
Q ss_pred HhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCc----cCchhHHHhhcC-CC------------CCcE-EEEE
Q 042791 92 GLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDY----NKWQPFFRCLKN-GL------------HGSK-ILVT 153 (761)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~----~~~~~l~~~~~~-~~------------~~~~-iiiT 153 (761)
-.....-......+++.+++. +.++.++++|++|.... ++..+++..+.. ++ .=|+ +.||
T Consensus 394 -GHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFia 471 (782)
T COG0466 394 -GHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIA 471 (782)
T ss_pred -cccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEe
Confidence 111111122234455555554 56788999999965221 122333333321 11 0133 3344
Q ss_pred ecc--hhhh-hhcCCCCeeecCCCChHHHHHHHHHHhh
Q 042791 154 TRN--ESVA-RMMGSTDSISIKQLAEEECWSLFKQLAF 188 (761)
Q Consensus 154 tr~--~~~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~ 188 (761)
|-+ ..+. +.+...+++++.+.+++|-.++-.++..
T Consensus 472 TANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 472 TANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred ecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 433 2232 2234567999999999999988888753
No 179
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.1e-05 Score=53.98 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=21.7
Q ss_pred ccCccccCCcCCccCchhhhccCCCcEEecCCcc
Q 042791 461 HLKYLNLSELGIERLPETLCELYNLQKLDIRRCR 494 (761)
Q Consensus 461 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 494 (761)
+|++|++++|+|+.+|..+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 5666667666666666666666777777776665
No 180
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.87 E-value=0.0004 Score=68.60 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHH
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIA 86 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 86 (761)
+.|.+.|++|+|||++|++++. ... ..+.++++....+..+++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDLV 64 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHHh
Confidence 4678999999999999999996 332 224456665555554443
No 181
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.85 E-value=3.7e-05 Score=81.04 Aligned_cols=196 Identities=15% Similarity=0.163 Sum_probs=116.6
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHH
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIA 86 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 86 (761)
|..-+++||.+--.+.|...+...+ -.+.-...|+-|+||||+||.++. .+...=. ...-+|+....=+.+-
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~Ak--alNC~~~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAK--ALNCENG-PTAEPCGKCISCKEIN 83 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHH--HhcCCCC-CCCCcchhhhhhHhhh
Confidence 4455678999999999999998543 256677999999999999999997 2211100 1011111111001110
Q ss_pred H----HHHHHhcCCCCCCCcHHHHHHHHHHHh-CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecch-hhh
Q 042791 87 K----AIIEGLGESASGLNEFQSLMSRIQSSI-KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVA 160 (761)
Q Consensus 87 ~----~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~-~~~ 160 (761)
. ++.+-=..+...+++..++.+.....= +++--+.|||+|+..+...+..++.-+..-....++|++|++. .+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 0 000000001112222233222222111 2444489999998888888888888877766666777777764 332
Q ss_pred hh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 161 RM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 161 ~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
.. +..+..+.++.++.++....+...+....- ....+....|++.++|-.
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I----~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI----NIEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCC----ccCHHHHHHHHHHcCCCh
Confidence 22 345778999999999999999987743322 233455677777777744
No 182
>PRK08181 transposase; Validated
Probab=97.85 E-value=4.8e-05 Score=74.40 Aligned_cols=101 Identities=20% Similarity=0.240 Sum_probs=57.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCce
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKK 118 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (761)
+.++++|++|+|||.||.++++ ........+.|++ ..++...+...... ......... + .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~------~~~L~~~l~~a~~~-----~~~~~~l~~----l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR------TTDLVQKLQVARRE-----LQLESAIAK----L-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee------HHHHHHHHHHHHhC-----CcHHHHHHH----H-hcC
Confidence 4689999999999999999997 4444445567774 34455555432211 122222222 2 133
Q ss_pred EEEEEeCCCCCCccCc--hhHHHhhcCCCCCcEEEEEecch
Q 042791 119 NFLVLDDVWDGDYNKW--QPFFRCLKNGLHGSKILVTTRNE 157 (761)
Q Consensus 119 ~LlvlDd~~~~~~~~~--~~l~~~~~~~~~~~~iiiTtr~~ 157 (761)
-||||||+.......+ ..+...+........+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 4999999954322222 23444443322223488888853
No 183
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.84 E-value=0.00021 Score=82.15 Aligned_cols=206 Identities=17% Similarity=0.231 Sum_probs=107.3
Q ss_pred CceecccchHHHHHHHHhcCCcc---CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSE---QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAK 87 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~---~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (761)
..++|.++.++.+.+.+.....+ +.....++.++|++|+|||.+|++++. .+-......+-++++......
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~--~l~~~~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE--LLYGGEQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH--HHhCCCcceEEEeHHHhhhhh----
Confidence 45889999999999888653211 012234789999999999999999987 332222333334333322111
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhC-CceEEEEEeCCCCCCccCchhHHHhhcCCC-----------CCcEEEEEec
Q 042791 88 AIIEGLGESASGLNEFQSLMSRIQSSIK-GKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTR 155 (761)
Q Consensus 88 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~~~~iiiTtr 155 (761)
.+...++ ..+.....++ ...+.+.++ ...-+|+||+++..+...++.+...+..+. ..+.||+||.
T Consensus 640 ~~~~l~g-~~~gyvg~~~-~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSN 717 (852)
T TIGR03345 640 TVSRLKG-SPPGYVGYGE-GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSN 717 (852)
T ss_pred hhccccC-CCCCcccccc-cchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCC
Confidence 1111122 1111111111 011223332 345699999998766666677766665442 3355777765
Q ss_pred c--hhhhhh-----------------------------cCCCCeeecCCCChHHHHHHHHHHhhCC-----CC-CCCCCc
Q 042791 156 N--ESVARM-----------------------------MGSTDSISIKQLAEEECWSLFKQLAFFG-----CS-FEDCEK 198 (761)
Q Consensus 156 ~--~~~~~~-----------------------------~~~~~~~~l~~l~~~ea~~l~~~~~~~~-----~~-~~~~~~ 198 (761)
. ..+... ++...++...+|+.++..+++....... .. ......
T Consensus 718 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i 797 (852)
T TIGR03345 718 AGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVY 797 (852)
T ss_pred CchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEE
Confidence 3 111110 0112356777888888887776543210 00 011122
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHh
Q 042791 199 LEPIGRKIACKCKGLPLAAKVIGNLL 224 (761)
Q Consensus 199 ~~~~~~~i~~~~~g~Plal~~~~~~l 224 (761)
.+++...|++.+.+.-...+-+-+.+
T Consensus 798 ~d~a~~~La~~g~~~~~GAR~L~r~I 823 (852)
T TIGR03345 798 SEALVEHIVARCTEVESGARNIDAIL 823 (852)
T ss_pred CHHHHHHHHHHcCCCCCChHHHHHHH
Confidence 33445556666655444444444444
No 184
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.84 E-value=0.00019 Score=76.58 Aligned_cols=183 Identities=15% Similarity=0.044 Sum_probs=92.2
Q ss_pred CCCceecccchHHHHHHHHhcC----CccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHH
Q 042791 9 DEGEVCGRVDEKNELLSKLLCE----SSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIR 84 (761)
Q Consensus 9 ~~~~~vgr~~~~~~l~~~l~~~----~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (761)
.-+++.|.+...+.+.+..... ...+-..++-|.++|++|+|||.+|++++. .....| +.+.++.
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~--e~~~~~---~~l~~~~------ 294 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN--DWQLPL---LRLDVGK------ 294 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEEhHH------
Confidence 3445667655554444321110 000123467899999999999999999998 333222 1222211
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCc--------cCc----hhHHHhhcCCCCCcEEEE
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDY--------NKW----QPFFRCLKNGLHGSKILV 152 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~--------~~~----~~l~~~~~~~~~~~~iii 152 (761)
+. ....+ .....+.+.+...-...+.+|+||++|..-. ... ..+...+.....+.-||.
T Consensus 295 l~----~~~vG-----ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 295 LF----GGIVG-----ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred hc----ccccC-----hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 11 00000 0111122222222235789999999964100 001 112222222233444666
Q ss_pred Eecchh-----hhhhcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 153 TTRNES-----VARMMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 153 Ttr~~~-----~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
||.... +.+.-..+..+.++.-+.++..++|..+..+..... ........+++.+.|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~---~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKS---WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCc---ccccCHHHHHhhcCCCC
Confidence 665433 222112356788999999999999998875422111 01122456777666654
No 185
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.83 E-value=0.0001 Score=73.97 Aligned_cols=122 Identities=15% Similarity=0.205 Sum_probs=69.7
Q ss_pred cccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhc
Q 042791 15 GRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLG 94 (761)
Q Consensus 15 gr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (761)
+|....+...+++..-.. +...+-+.++|+.|+|||.||.++++ .....-..+.|+.+ .+++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~--~l~~~g~~v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIAN--ELAKKGVSSTLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEEH------HHHHHHHHHHHh
Confidence 444445555555553321 12346789999999999999999998 45444444667744 345555554443
Q ss_pred CCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchh--HHHhh-cCC-CCCcEEEEEecc
Q 042791 95 ESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQP--FFRCL-KNG-LHGSKILVTTRN 156 (761)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~--l~~~~-~~~-~~~~~iiiTtr~ 156 (761)
.. .....++ . + .+.-||||||+.-+....|.. ++..+ ... .....+|+||-.
T Consensus 205 ~~-----~~~~~l~---~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG-----SVKEKID---A-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC-----cHHHHHH---H-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 21 1222222 2 2 244599999996655555543 44433 222 234458888774
No 186
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=0.00075 Score=67.69 Aligned_cols=174 Identities=10% Similarity=0.075 Sum_probs=102.5
Q ss_pred HHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHh-------
Q 042791 21 NELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGL------- 93 (761)
Q Consensus 21 ~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l------- 93 (761)
+.+.+.+... .-++...++|+.|+||+++|+.+++-. ....-.. ..++.. ..-+.+...-
T Consensus 13 ~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~l-lC~~~~~---~~Cg~C----~sC~~~~~g~HPD~~~i 79 (319)
T PRK06090 13 QNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRAL-LCQNYQS---EACGFC----HSCELMQSGNHPDLHVI 79 (319)
T ss_pred HHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHH-cCCCCCC---CCCCCC----HHHHHHHcCCCCCEEEE
Confidence 4455555432 336789999999999999999998721 1111000 001110 0000000000
Q ss_pred cCC-CCCCCcHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc-hhhhhhc-CC
Q 042791 94 GES-ASGLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVARMM-GS 165 (761)
Q Consensus 94 ~~~-~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~-~~~~~~~-~~ 165 (761)
... .......+++. .+.+.+ .+..-++|||+++.......+.++..+..-..++.+|++|.+ ..+.+.+ ..
T Consensus 80 ~p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 80 KPEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred ecCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 000 01112233332 222222 244568999999888778888899988886666766666555 4555443 44
Q ss_pred CCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 166 TDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 166 ~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
...+.+.+++++++.+.+.... . . .+..+++.++|.|+....+
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~----~----~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 159 CQQWVVTPPSTAQAMQWLKGQG----I----T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ceeEeCCCCCHHHHHHHHHHcC----C----c----hHHHHHHHcCCCHHHHHHH
Confidence 6789999999999999887632 0 0 1356788999999876554
No 187
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.83 E-value=0.00014 Score=83.56 Aligned_cols=164 Identities=16% Similarity=0.212 Sum_probs=86.6
Q ss_pred ceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHH
Q 042791 12 EVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIE 91 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~ 91 (761)
+.+|.++..+++.+++......+..+.+++.++|++|+|||++|+.++. .+...|- -+.++...+..++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~~---~i~~~~~~~~~~i~g~--- 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKFV---RFSLGGVRDEAEIRGH--- 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCeE---EEeCCCcccHHHHcCC---
Confidence 4678888888888866432111122345789999999999999999998 4443332 2223332233222110
Q ss_pred HhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCcc----CchhHHHhhcC--------CC-------CCcEEEE
Q 042791 92 GLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYN----KWQPFFRCLKN--------GL-------HGSKILV 152 (761)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~----~~~~l~~~~~~--------~~-------~~~~iii 152 (761)
...........+.+.+.... ..+.+++||+++..... ....++..+.. .. ....+|.
T Consensus 393 ---~~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~ 468 (775)
T TIGR00763 393 ---RRTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA 468 (775)
T ss_pred ---CCceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEE
Confidence 00000111122333343332 33348899999764321 12334333321 00 1233444
Q ss_pred Eecch-hhhhh-cCCCCeeecCCCChHHHHHHHHHHh
Q 042791 153 TTRNE-SVARM-MGSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 153 Ttr~~-~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
||... .+... ......+++.+++.++..+++..+.
T Consensus 469 TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 469 TANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred ecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 54432 22221 2334588999999999988887754
No 188
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.83 E-value=0.00031 Score=81.04 Aligned_cols=125 Identities=13% Similarity=0.227 Sum_probs=71.3
Q ss_pred CceecccchHHHHHHHHhcCCccC---CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQ---QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAK 87 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~---~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (761)
..++|.+..++.+...+.....+. +.....+.++|++|+|||++|+++++ .........+.++++......
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~--~l~~~~~~~i~id~se~~~~~---- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN--FMFDSDDAMVRIDMSEFMEKH---- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH--HhhcCCCcEEEEEhHHhhhhh----
Confidence 358899999999998887543110 11124788999999999999999997 333333334555554322111
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhC-CceEEEEEeCCCCCCccCchhHHHhhcC
Q 042791 88 AIIEGLGESASGLNEFQSLMSRIQSSIK-GKKNFLVLDDVWDGDYNKWQPFFRCLKN 143 (761)
Q Consensus 88 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 143 (761)
....+.+..+.....+. ...+.+.++ ...-+++|||++..+...+..+...+..
T Consensus 642 -~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~ 696 (857)
T PRK10865 642 -SVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDD 696 (857)
T ss_pred -hHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhh
Confidence 11222222211111111 112333332 2235999999987666777777776654
No 189
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00013 Score=69.97 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=47.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhh--hccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEV--KRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIK 115 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 115 (761)
-|.|.++||||.|||+|++++++...+ ...|.....+.++.. .+.++...+. ..-...+.++|.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh--------sLFSKWFsES--gKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH--------SLFSKWFSES--GKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh--------HHHHHHHhhh--hhHHHHHHHHHHHHHh
Confidence 488999999999999999999985333 334444444544432 2222222211 1223445566666665
Q ss_pred Cc--eEEEEEeCCC
Q 042791 116 GK--KNFLVLDDVW 127 (761)
Q Consensus 116 ~~--~~LlvlDd~~ 127 (761)
++ =+.+.+|+|.
T Consensus 247 d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVE 260 (423)
T ss_pred CCCcEEEEEeHHHH
Confidence 44 3456679883
No 190
>PRK10536 hypothetical protein; Provisional
Probab=97.81 E-value=0.00011 Score=69.87 Aligned_cols=130 Identities=15% Similarity=0.220 Sum_probs=72.7
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEE----ecCC-----CC
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC----VSNT-----FD 81 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~----~~~~-----~~ 81 (761)
..+.+|......+..++.. ...|++.|++|+|||+||.+++.+.-....|..++... .+.. -+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 3456788888888888853 24899999999999999999887422244455443331 1100 01
Q ss_pred H--------HHHHHHHHHHhcCCCCCCCcHHHHHH----H----HHHHhCCceE---EEEEeCCCCCCccCchhHHHhhc
Q 042791 82 Q--------IRIAKAIIEGLGESASGLNEFQSLMS----R----IQSSIKGKKN---FLVLDDVWDGDYNKWQPFFRCLK 142 (761)
Q Consensus 82 ~--------~~~~~~i~~~l~~~~~~~~~~~~~~~----~----~~~~l~~~~~---LlvlDd~~~~~~~~~~~l~~~~~ 142 (761)
. .-+++.+...++. ...+.... . -...+++..+ ++|+|+++..+......++.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~~~-----~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt--- 198 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRLGA-----SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT--- 198 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhCh-----HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh---
Confidence 1 1122222222221 01111100 0 0123455544 99999997765555555544
Q ss_pred CCCCCcEEEEEecc
Q 042791 143 NGLHGSKILVTTRN 156 (761)
Q Consensus 143 ~~~~~~~iiiTtr~ 156 (761)
..+.++++|+|.-.
T Consensus 199 R~g~~sk~v~~GD~ 212 (262)
T PRK10536 199 RLGENVTVIVNGDI 212 (262)
T ss_pred hcCCCCEEEEeCCh
Confidence 44568999988554
No 191
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00047 Score=72.04 Aligned_cols=183 Identities=15% Similarity=0.136 Sum_probs=102.1
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCcc------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSE------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT 79 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (761)
+.++-+++=|.++.++++.+.+.....+ +-..++=|.++|++|+|||.||++++. +..-. |+.++..
T Consensus 185 snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vP-----f~~isAp 257 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVP-----FLSISAP 257 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCc-----eEeecch
Confidence 3556677888999999998886653211 113467788999999999999999998 34333 3333332
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCC-----------ccCchhHHHhhcCC----
Q 042791 80 FDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGD-----------YNKWQPFFRCLKNG---- 144 (761)
Q Consensus 80 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~-----------~~~~~~l~~~~~~~---- 144 (761)
.|...+.++ ..+.+.+.+.++...-+++++||++|-.. ..-..+++.....-
T Consensus 258 --------eivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~ 324 (802)
T KOG0733|consen 258 --------EIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEK 324 (802)
T ss_pred --------hhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccc
Confidence 233333322 22334444455556789999999996411 01112233322221
Q ss_pred CCCc-EEEE--Eecchhh----hhhcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCC
Q 042791 145 LHGS-KILV--TTRNESV----ARMMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGL 213 (761)
Q Consensus 145 ~~~~-~iii--Ttr~~~~----~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 213 (761)
..|. .++| |+|...+ .+.-..++-+.+..-++.+..+++...+-+-..... .. .++|++..-|.
T Consensus 325 ~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~-~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 325 TKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGD-FD----FKQLAKLTPGF 395 (802)
T ss_pred cCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCC-cC----HHHHHhcCCCc
Confidence 1122 2333 3443322 222123567788888888878887776643222221 11 45666666664
No 192
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.78 E-value=0.001 Score=68.80 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=35.0
Q ss_pred cchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc
Q 042791 17 VDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN 67 (761)
Q Consensus 17 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~ 67 (761)
+.-.+.+.+.+...+ ...+.+|+|.|.=|+||||+.+++.+ .+...
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~--~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKE--ELKED 47 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHH--HHhcc
Confidence 344566777777553 25688999999999999999999988 44444
No 193
>PRK12377 putative replication protein; Provisional
Probab=97.77 E-value=9.3e-05 Score=71.43 Aligned_cols=102 Identities=19% Similarity=0.137 Sum_probs=57.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGK 117 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 117 (761)
...++++|++|+|||+||.++++ .+......++|+++. ++...+-...... ..... +.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~~----~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVP------DVMSRLHESYDNG----QSGEK----FLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHH------HHHHHHHHHHhcc----chHHH----HHHHh-cC
Confidence 35789999999999999999998 555555557777443 4444444333211 11112 22222 34
Q ss_pred eEEEEEeCCCCCCccCc--hhHHHhhcCCC-CCcEEEEEecc
Q 042791 118 KNFLVLDDVWDGDYNKW--QPFFRCLKNGL-HGSKILVTTRN 156 (761)
Q Consensus 118 ~~LlvlDd~~~~~~~~~--~~l~~~~~~~~-~~~~iiiTtr~ 156 (761)
.-||||||+.......| +.+...+.... ...-+||||-.
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 55999999954322233 23333333221 12237777764
No 194
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.77 E-value=0.00011 Score=83.48 Aligned_cols=165 Identities=18% Similarity=0.235 Sum_probs=93.3
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAII 90 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 90 (761)
.+.+|.++..+++.+++............++.++|++|+||||+|+.++. .....|- -+.++...+...+...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~---~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYV---RMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEE---EEEcCCCCCHHHhccchh
Confidence 44788899999998887742211122345789999999999999999997 4444332 233343333332221111
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccC----chhHHHhhcCC---------------CCCcEEE
Q 042791 91 EGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNK----WQPFFRCLKNG---------------LHGSKIL 151 (761)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~----~~~l~~~~~~~---------------~~~~~ii 151 (761)
...+ . ......+.+... ...+.++++|+++...... .+.+...+... -...-+|
T Consensus 397 ~~~g-~-----~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIG-S-----MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCC-C-----CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 1111 1 112233333332 2234578999997643332 35555554321 0223345
Q ss_pred EEecchhhhhh-cCCCCeeecCCCChHHHHHHHHHHh
Q 042791 152 VTTRNESVARM-MGSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 152 iTtr~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
.|+....+.+. ++....+++.+++++|-.++..++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 55544333222 2345688999999999999988876
No 195
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.75 E-value=0.00049 Score=79.89 Aligned_cols=125 Identities=13% Similarity=0.259 Sum_probs=73.8
Q ss_pred CceecccchHHHHHHHHhcCCccC---CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQ---QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAK 87 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~---~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (761)
..++|.+..++.+.+.+.....+. .....++.+.|++|+|||++|+.++. .....-...+.++++.......+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~~i~~d~s~~~~~~~~~- 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE--FLFDDEDAMVRIDMSEYMEKHSVA- 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH--HhcCCCCcEEEEechhhcccchHH-
Confidence 458999999999999987643110 11235788999999999999999997 343333345556555433222111
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhC-CceEEEEEeCCCCCCccCchhHHHhhcC
Q 042791 88 AIIEGLGESASGLNEFQSLMSRIQSSIK-GKKNFLVLDDVWDGDYNKWQPFFRCLKN 143 (761)
Q Consensus 88 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 143 (761)
..++. .+.....++ ...+.+.++ ....+++||+++..+...+..++..+..
T Consensus 642 ---~l~g~-~~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~ 693 (852)
T TIGR03346 642 ---RLIGA-PPGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDD 693 (852)
T ss_pred ---HhcCC-CCCccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhc
Confidence 11221 111111111 112333332 2334999999988777777778777654
No 196
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00028 Score=71.46 Aligned_cols=93 Identities=14% Similarity=0.193 Sum_probs=66.6
Q ss_pred CceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc-hhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCC
Q 042791 116 GKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSF 193 (761)
Q Consensus 116 ~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 193 (761)
++.-++|||+++.......+.++..+..-.+++.+|++|.+ ..+.+.+ .....+.+.+++.+++.+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 45568999999988888889999998876667766655554 5555443 446789999999999999997742 1
Q ss_pred CCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 194 EDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 194 ~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
.. ...++..++|.|.....+
T Consensus 206 ---~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 ---AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ---Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 233577889999654444
No 197
>PRK04296 thymidine kinase; Provisional
Probab=97.74 E-value=8.3e-05 Score=69.39 Aligned_cols=114 Identities=13% Similarity=0.075 Sum_probs=64.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCC--CCcHHHHHHHHHHHhCC
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASG--LNEFQSLMSRIQSSIKG 116 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~~ 116 (761)
.++++.|++|.||||+|..++. +.......++++.- ..+.......++++++..... .....+....+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k~--~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFKP--AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEec--cccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4788999999999999988887 45444444554421 111111233445555432221 2234444444444 233
Q ss_pred ceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchhh
Q 042791 117 KKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESV 159 (761)
Q Consensus 117 ~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~ 159 (761)
+.-+||+|+++..+.++...+...+. ..|..||+|.++.+.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTDF 118 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCccc
Confidence 44589999995432332333333322 346779999887543
No 198
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.73 E-value=0.00013 Score=79.59 Aligned_cols=176 Identities=18% Similarity=0.246 Sum_probs=92.8
Q ss_pred CCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhh--hccCC-eeEEEEecC---CCC
Q 042791 8 IDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEV--KRNFE-KVIWVCVSN---TFD 81 (761)
Q Consensus 8 ~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~--~~~f~-~~~~v~~~~---~~~ 81 (761)
..-++++|.+..++.+...+... ....|.|+|++|+|||++|+.+++.... ...|. ..-|+.+.. ..+
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~ 135 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFD 135 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCC
Confidence 33456899999999999877533 3457889999999999999999862111 11222 122333221 112
Q ss_pred HHHHHHHHHHHhcCCCCC-CCcHH--HHHHHHHHHh-CCceEEEEEeCCCCCCccCchhHHHhhcCC-------------
Q 042791 82 QIRIAKAIIEGLGESASG-LNEFQ--SLMSRIQSSI-KGKKNFLVLDDVWDGDYNKWQPFFRCLKNG------------- 144 (761)
Q Consensus 82 ~~~~~~~i~~~l~~~~~~-~~~~~--~~~~~~~~~l-~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~------------- 144 (761)
.+.+...+.......... ..... ...+.-...+ +...-++++|+++.-+...+..++..+...
T Consensus 136 ~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~ 215 (531)
T TIGR02902 136 ERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSEN 215 (531)
T ss_pred ccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccC
Confidence 221211111100000000 00000 0000000001 224458999999887777777776655331
Q ss_pred ---------------CCCcEEEEE-ecchh-hhhhc-CCCCeeecCCCChHHHHHHHHHHhhC
Q 042791 145 ---------------LHGSKILVT-TRNES-VARMM-GSTDSISIKQLAEEECWSLFKQLAFF 189 (761)
Q Consensus 145 ---------------~~~~~iiiT-tr~~~-~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~ 189 (761)
....++|++ |++.. +.+.+ .....+.+++++++|..+++...+..
T Consensus 216 ~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k 278 (531)
T TIGR02902 216 PNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEK 278 (531)
T ss_pred cccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHH
Confidence 012366654 44422 22221 22457889999999999999987743
No 199
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.73 E-value=2.1e-05 Score=76.19 Aligned_cols=139 Identities=16% Similarity=0.144 Sum_probs=74.1
Q ss_pred CCceEEEEEeecCCCCCcc-----cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccc
Q 042791 373 GVKVRHLGLNFQRGASFPM-----SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEAN 447 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 447 (761)
...+|.+....|.....+. .|...+.|+.+.++.|.+..... .+....|..|++|++|||..|-|+. .
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~DNtft~-----e 228 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLRDNTFTL-----E 228 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh--HHHHHHHHhCCcceeeecccchhhh-----H
Confidence 4567777777776665442 35556677777776666543332 2344446667777777777665542 1
Q ss_pred cccccccchhcccccCccccCCcCCcc-----Cchhh-hccCCCcEEecCCccCccc----ccccccccccccEeecCCc
Q 042791 448 RIKEIPENVGKLIHLKYLNLSELGIER-----LPETL-CELYNLQKLDIRRCRNLRE----LPAGIGKLMNMRTLLNGET 517 (761)
Q Consensus 448 ~l~~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~~-~~l~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~ 517 (761)
+-..+...++.+++|+.|++++|.++. +-..+ ...++|+.|.+.+|..... +-..+...+.|..|++++|
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 111233445556667777777666552 11122 2245666666666653321 1112233555555555555
Q ss_pred c
Q 042791 518 Y 518 (761)
Q Consensus 518 ~ 518 (761)
.
T Consensus 309 ~ 309 (382)
T KOG1909|consen 309 R 309 (382)
T ss_pred c
Confidence 3
No 200
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.72 E-value=0.00024 Score=81.38 Aligned_cols=184 Identities=14% Similarity=0.067 Sum_probs=98.0
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
+.+.-+++.|.++.++++.+.+..+-.+ +-..++.++++|++|+|||++|+++++ ..... .+.+....
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~--~~~~~---~i~i~~~~ 247 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN--EAGAY---FISINGPE 247 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH--HhCCe---EEEEecHH
Confidence 4455566889999999998876432110 013356789999999999999999997 33322 22232211
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCc-----------cCchhHHHhhcCCC-C
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDY-----------NKWQPFFRCLKNGL-H 146 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~-----------~~~~~l~~~~~~~~-~ 146 (761)
+. .... ......+...+.......+.+|++||++.... .....+...+.... .
T Consensus 248 ------i~----~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~ 312 (733)
T TIGR01243 248 ------IM----SKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR 312 (733)
T ss_pred ------Hh----cccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC
Confidence 11 0000 01111222223333345668999999854210 01123333333221 2
Q ss_pred CcEEEE-Eecchh-hhhhc----CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 147 GSKILV-TTRNES-VARMM----GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 147 ~~~iii-Ttr~~~-~~~~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
+..++| ||.... +-..+ .....+++...+.++..+++..+.-.... ........+++.+.|.-
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-----~~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-----AEDVDLDKLAEVTHGFV 381 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-----ccccCHHHHHHhCCCCC
Confidence 333444 444322 21111 12446788888999999999865422111 11123567888888765
No 201
>PRK06526 transposase; Provisional
Probab=97.71 E-value=9.7e-05 Score=71.94 Aligned_cols=101 Identities=18% Similarity=0.238 Sum_probs=54.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGK 117 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 117 (761)
.+.++++|++|+|||+||.+++. ........+.|+ +..++...+...... .... ..+... .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~--~a~~~g~~v~f~------t~~~l~~~l~~~~~~-----~~~~---~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGI--RACQAGHRVLFA------TAAQWVARLAAAHHA-----GRLQ---AELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHH--HHHHCCCchhhh------hHHHHHHHHHHHHhc-----CcHH---HHHHHh--cc
Confidence 45789999999999999999987 333333334554 344455444332111 1111 122222 23
Q ss_pred eEEEEEeCCCCCCccCc--hhHHHhhcCC-CCCcEEEEEecch
Q 042791 118 KNFLVLDDVWDGDYNKW--QPFFRCLKNG-LHGSKILVTTRNE 157 (761)
Q Consensus 118 ~~LlvlDd~~~~~~~~~--~~l~~~~~~~-~~~~~iiiTtr~~ 157 (761)
.-++||||+.......+ ..+...+... ..++ +|+||..+
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 45899999965322222 2333333321 1233 88888754
No 202
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.70 E-value=0.00043 Score=79.11 Aligned_cols=122 Identities=14% Similarity=0.243 Sum_probs=70.7
Q ss_pred CceecccchHHHHHHHHhcCCccC---CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQ---QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAK 87 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~---~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (761)
..++|.++.++.+.+.+.....+. +....++.++|++|+|||++|+.++. .+ +...+.++++.......+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d~se~~~~~~~-- 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFDMSEYMEKHTV-- 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEeCchhhhcccH--
Confidence 457899999999888877532110 11234688999999999999999997 33 233455554443222111
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhC-CceEEEEEeCCCCCCccCchhHHHhhcC
Q 042791 88 AIIEGLGESASGLNEFQSLMSRIQSSIK-GKKNFLVLDDVWDGDYNKWQPFFRCLKN 143 (761)
Q Consensus 88 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 143 (761)
...++.. +.....++ ...+.+.++ ...-+++||+++....+.++.++..+..
T Consensus 527 --~~lig~~-~gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 527 --SRLIGAP-PGYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred --HHHhcCC-CCCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1112211 11111111 112333333 3345999999988777777777776654
No 203
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.0018 Score=66.58 Aligned_cols=133 Identities=24% Similarity=0.288 Sum_probs=78.0
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 042791 35 QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSI 114 (761)
Q Consensus 35 ~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 114 (761)
..+...|.+.|++|+|||+||.+++. ...|+++--+. +++. .+..+ ......+......+.
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiS------pe~m-------iG~sE--saKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIIS------PEDM-------IGLSE--SAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeC------hHHc-------cCccH--HHHHHHHHHHHHHhh
Confidence 34567899999999999999999996 45777554432 2211 11110 011122233333444
Q ss_pred CCceEEEEEeCCCC----------CCccCchhHHHhhcCCC-CCcE--EEEEecchhhhhhcCC----CCeeecCCCCh-
Q 042791 115 KGKKNFLVLDDVWD----------GDYNKWQPFFRCLKNGL-HGSK--ILVTTRNESVARMMGS----TDSISIKQLAE- 176 (761)
Q Consensus 115 ~~~~~LlvlDd~~~----------~~~~~~~~l~~~~~~~~-~~~~--iiiTtr~~~~~~~~~~----~~~~~l~~l~~- 176 (761)
+..=-.||+||+.. .+-.-+..+...+.... .|.| |+-||....+...++. ...+.++.++.
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence 55666899999943 11112234444444433 3445 4445555777777653 45788999987
Q ss_pred HHHHHHHHHH
Q 042791 177 EECWSLFKQL 186 (761)
Q Consensus 177 ~ea~~l~~~~ 186 (761)
++..+.++..
T Consensus 676 ~~~~~vl~~~ 685 (744)
T KOG0741|consen 676 EQLLEVLEEL 685 (744)
T ss_pred HHHHHHHHHc
Confidence 7777777764
No 204
>PRK09183 transposase/IS protein; Provisional
Probab=97.69 E-value=0.00018 Score=70.68 Aligned_cols=101 Identities=21% Similarity=0.292 Sum_probs=53.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGK 117 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 117 (761)
...++|+|++|+|||+||.+++. ........+.|++ ..++...+....... .. ...+...+ ..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~--~a~~~G~~v~~~~------~~~l~~~l~~a~~~~-----~~---~~~~~~~~-~~ 164 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGY--EAVRAGIKVRFTT------AADLLLQLSTAQRQG-----RY---KTTLQRGV-MA 164 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH--HHHHcCCeEEEEe------HHHHHHHHHHHHHCC-----cH---HHHHHHHh-cC
Confidence 35688999999999999999986 3333334455663 233333332221110 11 11222222 34
Q ss_pred eEEEEEeCCCCCCccCc--hhHHHhhcCC-CCCcEEEEEecc
Q 042791 118 KNFLVLDDVWDGDYNKW--QPFFRCLKNG-LHGSKILVTTRN 156 (761)
Q Consensus 118 ~~LlvlDd~~~~~~~~~--~~l~~~~~~~-~~~~~iiiTtr~ 156 (761)
.-++|+||+........ ..+...+... ..++ +||||..
T Consensus 165 ~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 165 PRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 45999999964322222 2344433321 1234 8888775
No 205
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.69 E-value=0.00025 Score=73.35 Aligned_cols=143 Identities=15% Similarity=0.203 Sum_probs=87.9
Q ss_pred ceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc---------------------CCe
Q 042791 12 EVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN---------------------FEK 70 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~---------------------f~~ 70 (761)
.++|-+....++..+..... ..++.+.++|++|+||||+|.++++. +-.. ++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~d 75 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKE--LLCENPTGLLPCGHCRSCKLIPAGNHPD 75 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHH--HhCCCcccCCcccchhhhhHHhhcCCCc
Confidence 46777888888888887442 33567999999999999999999983 3211 123
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCC
Q 042791 71 VIWVCVSNTFD---QIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHG 147 (761)
Q Consensus 71 ~~~v~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~ 147 (761)
+..+..++... ..+..+++.+...... ..+..-++|+|+++....+....+...+......
T Consensus 76 ~lel~~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~ 139 (325)
T COG0470 76 FLELNPSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKN 139 (325)
T ss_pred eEEecccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCC
Confidence 33333333222 1222222222221110 0256779999999887777777787777776667
Q ss_pred cEEEEEecc-hhhhhhc-CCCCeeecCCCCh
Q 042791 148 SKILVTTRN-ESVARMM-GSTDSISIKQLAE 176 (761)
Q Consensus 148 ~~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~ 176 (761)
+++|+++.. ..+...+ .....+++.+.+.
T Consensus 140 ~~~il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 140 TRFILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred eEEEEEcCChhhccchhhhcceeeecCCchH
Confidence 778877774 3444322 3355677777333
No 206
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.69 E-value=0.00072 Score=70.81 Aligned_cols=149 Identities=16% Similarity=0.214 Sum_probs=87.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceE
Q 042791 40 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKN 119 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (761)
+++|.|+-++||||+++.+... .... .+|+...+......-..+.. ..+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~-----------------~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLL-----------------RAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHH-----------------HHHHHhhccCCc
Confidence 9999999999999999766652 2222 56665433221111111111 111111122778
Q ss_pred EEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchhhh-----hhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCC
Q 042791 120 FLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVA-----RMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSF 193 (761)
Q Consensus 120 LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~-----~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 193 (761)
.|++|+|+. ...|...+..+.+.++. +|++|+.+..+. ..+ |....+++.|||-.|-..+-...+ .
T Consensus 97 yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----~- 168 (398)
T COG1373 97 YIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----E- 168 (398)
T ss_pred eEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----c-
Confidence 999999954 56788888887776655 788887764432 222 346689999999998876544100 0
Q ss_pred CCCCchhHHHHHHHHhcCCCchhHHHHH
Q 042791 194 EDCEKLEPIGRKIACKCKGLPLAAKVIG 221 (761)
Q Consensus 194 ~~~~~~~~~~~~i~~~~~g~Plal~~~~ 221 (761)
.......-.-.-..||.|.++..-.
T Consensus 169 ---~~~~~~~f~~Yl~~GGfP~~v~~~~ 193 (398)
T COG1373 169 ---PSKLELLFEKYLETGGFPESVKADL 193 (398)
T ss_pred ---hhHHHHHHHHHHHhCCCcHHHhCcc
Confidence 0001112222335789998776543
No 207
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.68 E-value=0.0003 Score=67.73 Aligned_cols=103 Identities=16% Similarity=0.202 Sum_probs=57.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGK 117 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 117 (761)
...++++|.+|+|||+||.++++ ........+++++ ..++...+-...... ...... +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~it------~~~l~~~l~~~~~~~---~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLIIT------VADIMSAMKDTFSNS---ETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEE------HHHHHHHHHHHHhhc---cccHHH----HHHHhc-c
Confidence 34788999999999999999998 4544445677773 444554444333211 111222 222333 3
Q ss_pred eEEEEEeCCCCCCccCchh--HHHhhcCCC-CCcEEEEEecc
Q 042791 118 KNFLVLDDVWDGDYNKWQP--FFRCLKNGL-HGSKILVTTRN 156 (761)
Q Consensus 118 ~~LlvlDd~~~~~~~~~~~--l~~~~~~~~-~~~~iiiTtr~ 156 (761)
.=+|||||+.......|.. +...+.... ..-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 3488999996654444442 222222211 12237777764
No 208
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.67 E-value=0.00062 Score=67.91 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=23.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..++.++|||++|+|||.+|++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~ 170 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFK 170 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 4589999999999999999999998
No 209
>PRK04132 replication factor C small subunit; Provisional
Probab=97.66 E-value=0.00091 Score=75.48 Aligned_cols=155 Identities=12% Similarity=0.029 Sum_probs=100.5
Q ss_pred EEc--CCCCcHHHHHHHHhcChhhhccC-CeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceE
Q 042791 43 LVG--LGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKN 119 (761)
Q Consensus 43 i~G--~~GiGKTtla~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (761)
+.| |.++||||+|++++++. ....+ ..++.+++++....+.+. .+........+. -..+.-
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~~--------------~~~~~K 632 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINVIR-EKVKEFARTKPI--------------GGASFK 632 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCCc--------------CCCCCE
Confidence 557 88999999999999841 12222 336667777655554333 333222111000 012457
Q ss_pred EEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc-hhhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCC
Q 042791 120 FLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCE 197 (761)
Q Consensus 120 LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~ 197 (761)
++|+|+++..+...++.++..+......+++|+++.+ ..+.+.+ ..+..+.+.++++++..+.+...+..... .
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi----~ 708 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL----E 708 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC----C
Confidence 9999999988777888888888765556677766665 4443332 34678999999999999888876643211 1
Q ss_pred chhHHHHHHHHhcCCCchhH
Q 042791 198 KLEPIGRKIACKCKGLPLAA 217 (761)
Q Consensus 198 ~~~~~~~~i~~~~~g~Plal 217 (761)
..++....|++.|+|.+...
T Consensus 709 i~~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 709 LTEEGLQAILYIAEGDMRRA 728 (846)
T ss_pred CCHHHHHHHHHHcCCCHHHH
Confidence 23456889999999988443
No 210
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0002 Score=78.87 Aligned_cols=154 Identities=18% Similarity=0.267 Sum_probs=91.5
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-C-----CeeEEEEecCCCCHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-F-----EKVIWVCVSNTFDQIR 84 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f-----~~~~~v~~~~~~~~~~ 84 (761)
++++||++|++++++.|..-.. +.+ ++.|.+|||||++|..++. ++... - +..++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K---NNP---vLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~s---------- 231 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK---NNP---VLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYS---------- 231 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC---CCC---eEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEE----------
Confidence 5689999999999999986542 222 4789999999999998887 44322 1 111111
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhC-CceEEEEEeCCCC----CCc----cCchhHHHh-hcCCCCCcEEEEEe
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSSIK-GKKNFLVLDDVWD----GDY----NKWQPFFRC-LKNGLHGSKILVTT 154 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~LlvlDd~~~----~~~----~~~~~l~~~-~~~~~~~~~iiiTt 154 (761)
-++..... ...-..++++....+.+.++ ..+++++||+++. ... .+...++.+ +..+ .-++|-.|
T Consensus 232 --LD~g~LvA-GakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG--eL~~IGAT 306 (786)
T COG0542 232 --LDLGSLVA-GAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG--ELRCIGAT 306 (786)
T ss_pred --ecHHHHhc-cccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC--CeEEEEec
Confidence 01111121 22334556666665555553 4589999999965 111 122222222 2221 23555555
Q ss_pred cchhhhhhc-------CCCCeeecCCCChHHHHHHHHHHh
Q 042791 155 RNESVARMM-------GSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 155 r~~~~~~~~-------~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
...+..+.+ .....+.+...+.+++..++....
T Consensus 307 T~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 307 TLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred cHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 543332221 235689999999999999997654
No 211
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.66 E-value=0.00086 Score=70.12 Aligned_cols=152 Identities=14% Similarity=0.218 Sum_probs=84.8
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHH-
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAI- 89 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i- 89 (761)
..++||++.++.+...+... ..|.|.|++|+|||++|+.++. ...... ...++.+.- .+..++...+
T Consensus 20 ~~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~--~~~~~~-~F~~~~~~f-ttp~DLfG~l~ 87 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKF--AFQNAR-AFEYLMTRF-STPEEVFGPLS 87 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHH--HhcccC-cceeeeeee-cCcHHhcCcHH
Confidence 45899999999999988754 3688999999999999999997 333211 111111110 0222222111
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhCC---ceEEEEEeCCCCCCccCchhHHHhhcCCC---------CCcEEEEEecch
Q 042791 90 IEGLGESASGLNEFQSLMSRIQSSIKG---KKNFLVLDDVWDGDYNKWQPFFRCLKNGL---------HGSKILVTTRNE 157 (761)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~LlvlDd~~~~~~~~~~~l~~~~~~~~---------~~~~iiiTtr~~ 157 (761)
+...... .. +.....+ ..-++++|+++.........++..+.... -+.++++++.++
T Consensus 88 i~~~~~~----g~-------f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 88 IQALKDE----GR-------YQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred Hhhhhhc----Cc-------hhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 1110000 00 0011111 12289999999887888888888773211 123565555542
Q ss_pred hhhh-------hcC-CCCeeecCCCChHHH-HHHHHHH
Q 042791 158 SVAR-------MMG-STDSISIKQLAEEEC-WSLFKQL 186 (761)
Q Consensus 158 ~~~~-------~~~-~~~~~~l~~l~~~ea-~~l~~~~ 186 (761)
+.. .+. ....+.++++++++. .+++...
T Consensus 157 -LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 -LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred -CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 211 111 123678899985444 7777664
No 212
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.66 E-value=1.6e-05 Score=88.39 Aligned_cols=149 Identities=24% Similarity=0.274 Sum_probs=97.3
Q ss_pred CCceEEEEEeecCCC--CCccc-ccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccc
Q 042791 373 GVKVRHLGLNFQRGA--SFPMS-FFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRI 449 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~--~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 449 (761)
..+++++++...... ..|.. -..+|.|++|.+.+-.+.... ...+..++++|+.||+|+.++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-----F~~lc~sFpNL~sLDIS~TnI---------- 185 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-----FSQLCASFPNLRSLDISGTNI---------- 185 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-----HHHHhhccCccceeecCCCCc----------
Confidence 457888888664322 11111 246899999988886653322 223467899999999995544
Q ss_pred cccccchhcccccCccccCCcCCccCc--hhhhccCCCcEEecCCccCcccc--cc----cccccccccEeecCCccccc
Q 042791 450 KEIPENVGKLIHLKYLNLSELGIERLP--ETLCELYNLQKLDIRRCRNLREL--PA----GIGKLMNMRTLLNGETYALK 521 (761)
Q Consensus 450 ~~lp~~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~l--p~----~~~~l~~L~~L~l~~~~~~~ 521 (761)
+.+ ..++.+++|+.|.+++-.+..-. ..+.+|++|+.||+|.......- .. --..||+|+.||.+++....
T Consensus 186 ~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 186 SNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred cCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 345 56889999999999887776433 46678999999999976543321 11 11358899999999886555
Q ss_pred ccccc-CCCCCCCcccC
Q 042791 522 YMPIG-ISKLTNLRTLD 537 (761)
Q Consensus 522 ~~p~~-l~~l~~L~~L~ 537 (761)
.+-+. +...++|+.+.
T Consensus 265 ~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 265 EILEELLNSHPNLQQIA 281 (699)
T ss_pred HHHHHHHHhCccHhhhh
Confidence 44333 23344454444
No 213
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.65 E-value=6.5e-05 Score=68.95 Aligned_cols=101 Identities=22% Similarity=0.364 Sum_probs=52.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGK 117 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 117 (761)
.+-+.++|++|+|||.||.++++ +....-..+.|++ ..+++..+-..- . ........+.+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~--~~~~~g~~v~f~~------~~~L~~~l~~~~----~-~~~~~~~~~~l~-----~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIAN--EAIRKGYSVLFIT------ASDLLDELKQSR----S-DGSYEELLKRLK-----R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEE------HHHHHHHHHCCH----C-CTTHCHHHHHHH-----T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHH--HhccCCcceeEee------cCceeccccccc----c-ccchhhhcCccc-----c
Confidence 46789999999999999999998 4444444577774 444555543221 1 112222222222 2
Q ss_pred eEEEEEeCCCCCCccCc--hhHHHhhcCCCCCcEEEEEecc
Q 042791 118 KNFLVLDDVWDGDYNKW--QPFFRCLKNGLHGSKILVTTRN 156 (761)
Q Consensus 118 ~~LlvlDd~~~~~~~~~--~~l~~~~~~~~~~~~iiiTtr~ 156 (761)
.=|+||||+.......+ +.+...+........+||||..
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhcccCeEeeCCC
Confidence 24888999954322222 1122222221112248888875
No 214
>PRK06921 hypothetical protein; Provisional
Probab=97.64 E-value=0.00017 Score=70.90 Aligned_cols=37 Identities=35% Similarity=0.393 Sum_probs=29.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhcc-CCeeEEEEe
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCV 76 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f~~~~~v~~ 76 (761)
...++++|++|+|||+||.++++ .+... ...++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 46789999999999999999998 44443 455778754
No 215
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00077 Score=71.46 Aligned_cols=185 Identities=15% Similarity=0.095 Sum_probs=94.7
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEec
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 77 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (761)
+|.++-++.=|-++...++.+.+.-+-.+ +-..++-|.++||||+|||++|+++++ +.+..|-.+ .
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nFlsv-----k 500 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNFLSV-----K 500 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCeeec-----c
Confidence 45566666666666666666554332221 124578899999999999999999998 444444222 1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCC-----c------cCchhHHHhhcCCCC
Q 042791 78 NTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGD-----Y------NKWQPFFRCLKNGLH 146 (761)
Q Consensus 78 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~-----~------~~~~~l~~~~~~~~~ 146 (761)
.. ++.....++ ....+.+...++-+.-+.+|+||++|... . .-+.+++..+.....
T Consensus 501 gp--------EL~sk~vGe-----SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~ 567 (693)
T KOG0730|consen 501 GP--------ELFSKYVGE-----SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA 567 (693)
T ss_pred CH--------HHHHHhcCc-----hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc
Confidence 11 122222111 11112222222223456899999986411 0 112233333333222
Q ss_pred C-cEEEEEecc--hhhhhh-c--C-CCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 147 G-SKILVTTRN--ESVARM-M--G-STDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 147 ~-~~iiiTtr~--~~~~~~-~--~-~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
. ..+||...+ ..+-.. + | .+..+.++.-+.+...++|+.++-+..-.. ... .+++++...|.-
T Consensus 568 ~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~-~vd----l~~La~~T~g~S 637 (693)
T KOG0730|consen 568 LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSE-DVD----LEELAQATEGYS 637 (693)
T ss_pred cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCc-ccc----HHHHHHHhccCC
Confidence 2 223333333 222111 1 2 356778888788888899998874432211 112 355665555543
No 216
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.63 E-value=5.6e-06 Score=87.42 Aligned_cols=112 Identities=23% Similarity=0.167 Sum_probs=67.6
Q ss_pred HHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccCchh-hhccCCCcEEecCCccCcccc
Q 042791 421 ELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCRNLREL 499 (761)
Q Consensus 421 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l 499 (761)
+.+.-++.|+.|+|++|++.. .. .+..|++|+.|||++|.++.+|.. ...+. |+.|.+++|. +.++
T Consensus 181 ~SLqll~ale~LnLshNk~~~----------v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL 247 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTK----------VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTL 247 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhh----------hH-HHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhh
Confidence 334556677777777666553 21 355667777777777777766632 22333 7777777765 4444
Q ss_pred cccccccccccEeecCCcccccccc--ccCCCCCCCcccCceeecCccCC
Q 042791 500 PAGIGKLMNMRTLLNGETYALKYMP--IGISKLTNLRTLDRFVVGGGVDG 547 (761)
Q Consensus 500 p~~~~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~ 547 (761)
- ++.+|++|+.||+++|-+. ... .-+..+..|+.|.+.+|+....+
T Consensus 248 ~-gie~LksL~~LDlsyNll~-~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 248 R-GIENLKSLYGLDLSYNLLS-EHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred h-hHHhhhhhhccchhHhhhh-cchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 3 4777777777777777322 211 11345566777777777655544
No 217
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=4.6e-05 Score=51.05 Aligned_cols=40 Identities=30% Similarity=0.402 Sum_probs=29.9
Q ss_pred CcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccCc
Q 042791 427 ACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERLP 476 (761)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp 476 (761)
++|++|++++|.+ +.+|..+++|++|++|++++|.++.++
T Consensus 1 ~~L~~L~l~~N~i----------~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQI----------TDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-----------SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCC----------cccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4688888885544 467777888999999999999887664
No 218
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00013 Score=80.20 Aligned_cols=126 Identities=14% Similarity=0.270 Sum_probs=81.0
Q ss_pred CceecccchHHHHHHHHhcCCccC---CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQ---QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAK 87 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~---~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (761)
.+++|.+..+..+.+.+...+.+- +...++..+.||.|||||.||++++. .+-+.-+..+-++.+.......+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~--~Lfg~e~aliR~DMSEy~EkHsV-- 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE--ALFGDEQALIRIDMSEYMEKHSV-- 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH--HhcCCCccceeechHHHHHHHHH--
Confidence 458999999999998887655321 22346778899999999999999997 33222234444444433222222
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhCCceE-EEEEeCCCCCCccCchhHHHhhcCC
Q 042791 88 AIIEGLGESASGLNEFQSLMSRIQSSIKGKKN-FLVLDDVWDGDYNKWQPFFRCLKNG 144 (761)
Q Consensus 88 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-LlvlDd~~~~~~~~~~~l~~~~~~~ 144 (761)
++|-+..+.-...++ ...+.+..+.++| +|.||++...+++-++.++..+.++
T Consensus 567 ---SrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 567 ---SRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred ---HHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 233333333333333 3446677777877 8889999887777778888777654
No 219
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.59 E-value=0.00014 Score=66.00 Aligned_cols=131 Identities=18% Similarity=0.203 Sum_probs=72.3
Q ss_pred eecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHH
Q 042791 13 VCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEG 92 (761)
Q Consensus 13 ~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 92 (761)
+||....+.++.+.+..... ....|.|+|+.|+||+.+|+.+.+ ...+.-...+-|+|+.. +.+.+...+.-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~--~s~r~~~pfi~vnc~~~-~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHN--NSPRKNGPFISVNCAAL-PEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHH--CSTTTTS-EEEEETTTS--HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHH--hhhcccCCeEEEehhhh-hcchhhhhhhcc
Confidence 47888888888887776542 235678999999999999999997 33333334445556543 333333333222
Q ss_pred hcCCCCCC-CcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCC-----------CCcEEEEEecc
Q 042791 93 LGESASGL-NEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTRN 156 (761)
Q Consensus 93 l~~~~~~~-~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~~~~iiiTtr~ 156 (761)
........ ...... +... ..=-++||+++.-.......+...+.... ...|||.||..
T Consensus 74 ~~~~~~~~~~~~~G~---l~~A---~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 74 EKGAFTGARSDKKGL---LEQA---NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp CSSSSTTTSSEBEHH---HHHT---TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ccccccccccccCCc---eeec---cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 11111111 100111 1111 33368899998876667777777765321 13578888774
No 220
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.58 E-value=0.0013 Score=75.62 Aligned_cols=184 Identities=15% Similarity=0.095 Sum_probs=97.3
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
|.+.-.++.|.++..+.+.+.+.-+-.. +...++-+.++|++|+|||++|++++. .....| +.+..
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~--e~~~~f---i~v~~-- 520 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT--ESGANF---IAVRG-- 520 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE---EEEeh--
Confidence 3445566778888777777765421110 023356688999999999999999998 333222 22211
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCC--------cc----CchhHHHhhcCC--
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGD--------YN----KWQPFFRCLKNG-- 144 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~--------~~----~~~~l~~~~~~~-- 144 (761)
.+ +.....+ .....+...+...-...+.+|++|+++.-. .. ....++..+...
T Consensus 521 ----~~----l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~ 587 (733)
T TIGR01243 521 ----PE----ILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE 587 (733)
T ss_pred ----HH----HhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC
Confidence 11 1111111 011122222233334567899999995410 00 112233333321
Q ss_pred CCCcEEEEEecchhhhhh-c----CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 145 LHGSKILVTTRNESVARM-M----GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 145 ~~~~~iiiTtr~~~~~~~-~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
..+..||.||......+. + .....++++..+.++..++|..+..+... .. ......+++.+.|.-
T Consensus 588 ~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~----~~~l~~la~~t~g~s 657 (733)
T TIGR01243 588 LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AE----DVDLEELAEMTEGYT 657 (733)
T ss_pred CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-Cc----cCCHHHHHHHcCCCC
Confidence 223345556654433221 1 23567889999999999999876532211 11 112466777777644
No 221
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.57 E-value=0.0015 Score=63.39 Aligned_cols=175 Identities=19% Similarity=0.209 Sum_probs=101.1
Q ss_pred CCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCH-HHHHH
Q 042791 9 DEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQ-IRIAK 87 (761)
Q Consensus 9 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~-~~~~~ 87 (761)
+...|+|-.++..++.+++..... .++...|.+.||.|.|||++......+ .+..-...+-|...+.... +-.++
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~ 97 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALK 97 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHH
Confidence 455689999999999999877654 345567889999999999999777764 2222244445555554433 23455
Q ss_pred HHHHHhcC----CCCCCCcHHHHHHHHHHHhC------CceEEEEEeCCCCCCccCchhH-HHhhc---C-CCCCcEEEE
Q 042791 88 AIIEGLGE----SASGLNEFQSLMSRIQSSIK------GKKNFLVLDDVWDGDYNKWQPF-FRCLK---N-GLHGSKILV 152 (761)
Q Consensus 88 ~i~~~l~~----~~~~~~~~~~~~~~~~~~l~------~~~~LlvlDd~~~~~~~~~~~l-~~~~~---~-~~~~~~iii 152 (761)
.|.+++.. .........+....+-..++ +.++++|+|++|-.....-..+ ...+. . ..|=+-|-+
T Consensus 98 ~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~ 177 (408)
T KOG2228|consen 98 GITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV 177 (408)
T ss_pred HHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe
Confidence 55555533 22233333444444544442 3468999999876432222222 22222 1 223345668
Q ss_pred Eecchh---hhhhc---CCCC-eeecCCCChHHHHHHHHHHh
Q 042791 153 TTRNES---VARMM---GSTD-SISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 153 Ttr~~~---~~~~~---~~~~-~~~l~~l~~~ea~~l~~~~~ 187 (761)
|||-.- +.+.. -.+. ++-+++++-++-+.+++...
T Consensus 178 Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 178 TTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 898632 11111 1234 34456667777777777765
No 222
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.54 E-value=0.00021 Score=66.19 Aligned_cols=130 Identities=22% Similarity=0.274 Sum_probs=62.0
Q ss_pred ccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCC---------CHH---
Q 042791 16 RVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF---------DQI--- 83 (761)
Q Consensus 16 r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~---------~~~--- 83 (761)
+..+-....+.|.. ...|++.|++|+|||.||.+.+.+.-..+.|+.++++.-.-.. +..
T Consensus 5 ~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 5 KNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp -SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS--------
T ss_pred CCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 34445555666652 3489999999999999998888654455788888776421110 000
Q ss_pred -HHHHHHHHHhcCCCCCCCcHHHHHHHH------HHHhCCc---eEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEE
Q 042791 84 -RIAKAIIEGLGESASGLNEFQSLMSRI------QSSIKGK---KNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVT 153 (761)
Q Consensus 84 -~~~~~i~~~l~~~~~~~~~~~~~~~~~------~~~l~~~---~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiT 153 (761)
-...-+...+..-. .....+...+.- ...++++ ..++|+|++++.+..++..++. +.+.+||+|++
T Consensus 77 ~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~skii~~ 152 (205)
T PF02562_consen 77 EPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKIIIT 152 (205)
T ss_dssp -TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EEEEE
T ss_pred HHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEEEEe
Confidence 01111111111111 111222221110 0233443 4699999997766655555544 44568999998
Q ss_pred ecch
Q 042791 154 TRNE 157 (761)
Q Consensus 154 tr~~ 157 (761)
.-..
T Consensus 153 GD~~ 156 (205)
T PF02562_consen 153 GDPS 156 (205)
T ss_dssp E---
T ss_pred cCce
Confidence 6543
No 223
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.53 E-value=9.3e-05 Score=65.20 Aligned_cols=108 Identities=15% Similarity=0.150 Sum_probs=64.4
Q ss_pred ecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHh
Q 042791 14 CGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGL 93 (761)
Q Consensus 14 vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l 93 (761)
||+...++++.+.+..-. .....|.|+|++|+||+++|+.+... .........-+.+.... .++
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~--~~~~~~~~~~~~~~~~~------~~~---- 64 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRY--SGRANGPFIVIDCASLP------AEL---- 64 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHT--TTTCCS-CCCCCHHCTC------HHH----
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhh--cCccCCCeEEechhhCc------HHH----
Confidence 577777777777766543 23456889999999999999999873 22211111111111111 111
Q ss_pred cCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCC-CCCcEEEEEecc
Q 042791 94 GESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG-LHGSKILVTTRN 156 (761)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~-~~~~~iiiTtr~ 156 (761)
+.. . +.--++++|++.-+...+..+...+... ....|+|.|++.
T Consensus 65 ----------------l~~-a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 65 ----------------LEQ-A--KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp ----------------HHH-C--TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred ----------------HHH-c--CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 111 1 3335779999887777777788777653 456799999885
No 224
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.53 E-value=0.00072 Score=59.88 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=65.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC---CCHHHHHHHHHHHh-----cCCC----CC-CC---c
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT---FDQIRIAKAIIEGL-----GESA----SG-LN---E 102 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~---~~~~~~~~~i~~~l-----~~~~----~~-~~---~ 102 (761)
+.|.|++..|.||||+|-..+- +..++-..+.++..-+. ......+..+- .+ +... .. .. .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 4788999999999999988776 45555555666554332 23333333331 00 0000 00 00 1
Q ss_pred HHHHHHHHHHHhCCce-EEEEEeCCCC---CCccCchhHHHhhcCCCCCcEEEEEecch
Q 042791 103 FQSLMSRIQSSIKGKK-NFLVLDDVWD---GDYNKWQPFFRCLKNGLHGSKILVTTRNE 157 (761)
Q Consensus 103 ~~~~~~~~~~~l~~~~-~LlvlDd~~~---~~~~~~~~l~~~~~~~~~~~~iiiTtr~~ 157 (761)
.....+..++.+.... =|+|||++-. ....+.+.+...+.......-+|+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1112233334444433 4999999822 22344556677676666677899999983
No 225
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.53 E-value=7.6e-05 Score=76.12 Aligned_cols=83 Identities=24% Similarity=0.396 Sum_probs=50.0
Q ss_pred ccCCCceeEEEEcccCCCCCCCchhhHHHHhccC-CcceEEeeccccccCCccccccccccccchhcccccCccccCCc-
Q 042791 393 FFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKL-ACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSEL- 470 (761)
Q Consensus 393 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~- 470 (761)
+..|.+++.|++++|.+. .+| .+ .+|+.|.+++ +..++.+|..+ ..+|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~------sLP-----~LP~sLtsL~Lsn---------c~nLtsLP~~L--P~nLe~L~Ls~Cs 105 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE------SLP-----VLPNELTEITIEN---------CNNLTTLPGSI--PEGLEKLTVCHCP 105 (426)
T ss_pred HHHhcCCCEEEeCCCCCc------ccC-----CCCCCCcEEEccC---------CCCcccCCchh--hhhhhheEccCcc
Confidence 445778888888877541 222 22 3588888875 44555666554 357888888887
Q ss_pred CCccCchhhhccCCCcEEecCCcc--Ccccccccc
Q 042791 471 GIERLPETLCELYNLQKLDIRRCR--NLRELPAGI 503 (761)
Q Consensus 471 ~i~~lp~~~~~l~~L~~L~l~~~~--~~~~lp~~~ 503 (761)
.+..+|. +|+.|+++++. .+..+|.++
T Consensus 106 ~L~sLP~------sLe~L~L~~n~~~~L~~LPssL 134 (426)
T PRK15386 106 EISGLPE------SVRSLEIKGSATDSIKNVPNGL 134 (426)
T ss_pred ccccccc------ccceEEeCCCCCcccccCcchH
Confidence 5667764 35556665433 234455433
No 226
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.53 E-value=3.7e-06 Score=88.80 Aligned_cols=126 Identities=19% Similarity=0.177 Sum_probs=97.9
Q ss_pred CCceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEI 452 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 452 (761)
+.++...+.+.|....+..++.-++.|+.|+|++|.+.. ...+..|++|+.|||++|.+. .+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~--------v~~Lr~l~~LkhLDlsyN~L~----------~v 224 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK--------VDNLRRLPKLKHLDLSYNCLR----------HV 224 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh--------hHHHHhcccccccccccchhc----------cc
Confidence 567778888888888888889999999999999998532 124678999999999976553 45
Q ss_pred ccc-hhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcc--cccccccccccccEeecCCccc
Q 042791 453 PEN-VGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLR--ELPAGIGKLMNMRTLLNGETYA 519 (761)
Q Consensus 453 p~~-~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~ 519 (761)
|.- ...++ |+.|++++|.++++ ..+.++.+|+.||+++|-..+ ++- -++.|..|+.|.|.+|+.
T Consensus 225 p~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~-pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 225 PQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELE-PLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccchhhhh-heeeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhh-HHHHHHHHHHHhhcCCcc
Confidence 531 12333 99999999998877 578899999999999987443 222 257888999999999853
No 227
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.53 E-value=0.00081 Score=75.83 Aligned_cols=122 Identities=13% Similarity=0.208 Sum_probs=69.5
Q ss_pred CceecccchHHHHHHHHhcCCccC---CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQ---QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAK 87 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~---~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (761)
..++|.++.++.+.+.+.....+. ......+.++|++|+|||++|++++. ... ...+.++++.......
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~--~l~---~~~i~id~se~~~~~~--- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALG---IELLRFDMSEYMERHT--- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH--HhC---CCcEEeechhhccccc---
Confidence 357999999999998887432110 11235789999999999999999997 342 2233444443322111
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhC-CceEEEEEeCCCCCCccCchhHHHhhcC
Q 042791 88 AIIEGLGESASGLNEFQSLMSRIQSSIK-GKKNFLVLDDVWDGDYNKWQPFFRCLKN 143 (761)
Q Consensus 88 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 143 (761)
+.+.++. .+.....+ ....+.+.++ ...-+++||+++....+-++.++..+..
T Consensus 530 -~~~LiG~-~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 530 -VSRLIGA-PPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred -HHHHcCC-CCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 1112222 11111100 0112233333 3346999999988766667777766653
No 228
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.00033 Score=70.91 Aligned_cols=71 Identities=8% Similarity=0.163 Sum_probs=50.1
Q ss_pred CceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecch-hhhhhc-CCCCeeecCCCChHHHHHHHHHH
Q 042791 116 GKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVARMM-GSTDSISIKQLAEEECWSLFKQL 186 (761)
Q Consensus 116 ~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~-~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~ 186 (761)
+.+-++|+|+++..+......+...+.....+..+|++|.+. .+...+ .....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 444566779998777777777888777655556677777764 344332 33668899999999999888763
No 229
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.51 E-value=0.00027 Score=75.47 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=62.0
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 042791 35 QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSI 114 (761)
Q Consensus 35 ~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 114 (761)
.+..+++.++|++|+||||||+.+++. ..| .|+-+++++..+...+-..|...+....... .
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------a 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------A 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhccccc-------------c
Confidence 356799999999999999999999972 344 3777888888888887777776654322110 1
Q ss_pred CCceEEEEEeCCCCCCccCchhHHHhh
Q 042791 115 KGKKNFLVLDDVWDGDYNKWQPFFRCL 141 (761)
Q Consensus 115 ~~~~~LlvlDd~~~~~~~~~~~l~~~~ 141 (761)
..++.-+|+|++|-......+.++..+
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv 411 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLV 411 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHH
Confidence 257788999999764433344444433
No 230
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.49 E-value=3.4e-05 Score=64.23 Aligned_cols=56 Identities=29% Similarity=0.373 Sum_probs=25.4
Q ss_pred ccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCc
Q 042791 461 HLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGET 517 (761)
Q Consensus 461 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 517 (761)
.++.|++++|.|+.+|..+..++.|+.|+++.|. +...|..|..|.+|-+|+..+|
T Consensus 78 t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred hhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCC
Confidence 4444444444444444444444444444444444 3333333444444444444444
No 231
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.48 E-value=0.0013 Score=66.42 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=64.0
Q ss_pred hHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC-Ce-eEEEEecC-CCCHHHHHHHHHHHhcC
Q 042791 19 EKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EK-VIWVCVSN-TFDQIRIAKAIIEGLGE 95 (761)
Q Consensus 19 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f-~~-~~~v~~~~-~~~~~~~~~~i~~~l~~ 95 (761)
...++++.+..- ++.+.++|.|++|+|||||++++++ .+.... +. ++|+-+.. ..++.++.+.+...+..
T Consensus 119 ~~~RvID~l~Pi-----GkGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPI-----GKGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeec-----CCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 445567776643 2345678999999999999999988 444433 33 34555544 44677888888877765
Q ss_pred CCCCCCcHHH-----HHHHHHHHh--CCceEEEEEeCC
Q 042791 96 SASGLNEFQS-----LMSRIQSSI--KGKKNFLVLDDV 126 (761)
Q Consensus 96 ~~~~~~~~~~-----~~~~~~~~l--~~~~~LlvlDd~ 126 (761)
...+...... ....+.+++ .+++++||+|++
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 4332222211 122222333 488999999999
No 232
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.47 E-value=0.00029 Score=71.18 Aligned_cols=102 Identities=18% Similarity=0.259 Sum_probs=56.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCce
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKK 118 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (761)
..++++|++|+|||.||.++++ .+......|+|+++ .+++..+...-... ..+.... + +.+. +-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t~------~~l~~~l~~~~~~~---~~~~~~~---~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRTA------DELIEILREIRFNN---DKELEEV---Y-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEEH------HHHHHHHHHHHhcc---chhHHHH---H-HHhc-cC
Confidence 6799999999999999999998 44444456778743 33444443321111 1111111 1 2221 22
Q ss_pred EEEEEeCCCCCCccCc--hhHHHhhcCC-CCCcEEEEEecc
Q 042791 119 NFLVLDDVWDGDYNKW--QPFFRCLKNG-LHGSKILVTTRN 156 (761)
Q Consensus 119 ~LlvlDd~~~~~~~~~--~~l~~~~~~~-~~~~~iiiTtr~ 156 (761)
=||||||+.......| ..+...+... ..+..+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4899999955432333 3333333322 123458888874
No 233
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.00014 Score=68.93 Aligned_cols=88 Identities=22% Similarity=0.153 Sum_probs=42.5
Q ss_pred hccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccCchhh-hccCCCcEEecCCccCcc-ccc
Q 042791 423 FSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERLPETL-CELYNLQKLDIRRCRNLR-ELP 500 (761)
Q Consensus 423 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~-~lp 500 (761)
-+.++.++.|||.+|.++. .. .+..-+.+++.|++|+++.|++..-.... ..+.+|+.|-|.|...-- ..-
T Consensus 67 ~~~~~~v~elDL~~N~iSd----Ws---eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~ 139 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISD----WS---EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQST 139 (418)
T ss_pred HHHhhhhhhhhcccchhcc----HH---HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhh
Confidence 3456666666666666543 11 22223445666666666666554221121 234555666555543211 111
Q ss_pred ccccccccccEeecCCc
Q 042791 501 AGIGKLMNMRTLLNGET 517 (761)
Q Consensus 501 ~~~~~l~~L~~L~l~~~ 517 (761)
..+..++.+++|+++.|
T Consensus 140 s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhhcchhhhhhhhccc
Confidence 22344555555555544
No 234
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.45 E-value=6e-05 Score=66.70 Aligned_cols=89 Identities=22% Similarity=0.221 Sum_probs=49.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEE
Q 042791 41 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNF 120 (761)
Q Consensus 41 v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~L 120 (761)
|.|+|++|+|||++|+.+++ .. -..+..+.+....+..++....--. .... .. ....+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~---~~~~~~i~~~~~~~~~dl~g~~~~~-~~~~-~~-~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LL---GRPVIRINCSSDTTEEDLIGSYDPS-NGQF-EF-KDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HH---TCEEEEEE-TTTSTHHHHHCEEET--TTTT-CE-EE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hh---hcceEEEEeccccccccceeeeeec-cccc-cc-ccccccccc-----cceeE
Confidence 68999999999999999997 34 2234556777777777664322211 0000 00 000000000 17889
Q ss_pred EEEeCCCCCCccCchhHHHhhc
Q 042791 121 LVLDDVWDGDYNKWQPFFRCLK 142 (761)
Q Consensus 121 lvlDd~~~~~~~~~~~l~~~~~ 142 (761)
+|+|+++.....-+..+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999997654444455544443
No 235
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.44 E-value=0.00048 Score=79.66 Aligned_cols=125 Identities=12% Similarity=0.230 Sum_probs=71.7
Q ss_pred CceecccchHHHHHHHHhcCCcc---CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSE---QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAK 87 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~---~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (761)
..++|.++.++.+.+.+.....+ +......+.++|++|+|||++|+.+++ .+-+.-...+.++.+.......+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhccccccHHH
Confidence 55889999999998887643211 011234678999999999999999997 3322223344454444322222211
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhCCc-eEEEEEeCCCCCCccCchhHHHhhcC
Q 042791 88 AIIEGLGESASGLNEFQSLMSRIQSSIKGK-KNFLVLDDVWDGDYNKWQPFFRCLKN 143 (761)
Q Consensus 88 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~LlvlDd~~~~~~~~~~~l~~~~~~ 143 (761)
.++. .+.-...++ ...+.+.++.+ .-++++|+++..+..-++.++..+..
T Consensus 587 ----l~g~-~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~ 637 (821)
T CHL00095 587 ----LIGS-PPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDD 637 (821)
T ss_pred ----hcCC-CCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhcc
Confidence 1221 111111111 11233444434 35899999988777777777777665
No 236
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0054 Score=56.77 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=86.2
Q ss_pred eecc-cchHHHHHHHHhcCCccC-------CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHH
Q 042791 13 VCGR-VDEKNELLSKLLCESSEQ-------QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIR 84 (761)
Q Consensus 13 ~vgr-~~~~~~l~~~l~~~~~~~-------~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (761)
.||+ +.+++++.+-+.-+-.++ -.+++-|.++|++|.|||-||+++++. . ...|+.++.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh--t-----~c~firvsgs----e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH--T-----DCTFIRVSGS----E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh--c-----ceEEEEechH----H
Confidence 4554 777777777665544321 246788999999999999999999972 2 2334555442 2
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCC-----------CccCchhHHHhh---cCC--CCCc
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDG-----------DYNKWQPFFRCL---KNG--LHGS 148 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~-----------~~~~~~~l~~~~---~~~--~~~~ 148 (761)
+.+.. ++... ....+.+..+-..-+-+|+.|++|.. +.+....++..+ ..+ ....
T Consensus 217 lvqk~---igegs------rmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkni 287 (404)
T KOG0728|consen 217 LVQKY---IGEGS------RMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNI 287 (404)
T ss_pred HHHHH---hhhhH------HHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccce
Confidence 22111 11110 11111111222345678999998651 222223333332 221 2345
Q ss_pred EEEEEecch-----hhhhhcCCCCeeecCCCChHHHHHHHHHHh
Q 042791 149 KILVTTRNE-----SVARMMGSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 149 ~iiiTtr~~-----~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
|||.+|..- .+.+.-..+..++.++-+++...+++.-+.
T Consensus 288 kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 288 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 777665532 333322346788999988888888887654
No 237
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.43 E-value=0.00087 Score=72.04 Aligned_cols=64 Identities=23% Similarity=0.244 Sum_probs=47.3
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEE
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 75 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~ 75 (761)
|...++++...+.++++..||...-.+ ....+++++.||+|+||||.++.++++ + .|+..-|.+
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~-~~~~~iLlLtGP~G~GKtttv~~La~e--l--g~~v~Ew~n 78 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSG-SSPKRILLLTGPSGCGKTTTVKVLAKE--L--GFEVQEWIN 78 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhcc-CCCcceEEEECCCCCCHHHHHHHHHHH--h--CCeeEEecC
Confidence 344456777888999999999864321 334679999999999999999999983 2 345555653
No 238
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.42 E-value=0.00015 Score=72.91 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=42.5
Q ss_pred ceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 12 EVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+++|.++.++++.+++.....+...+.++++++|++|+||||+|+++++
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~ 100 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKR 100 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 7999999999999999876643234568999999999999999999997
No 239
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=3.6e-05 Score=72.77 Aligned_cols=60 Identities=22% Similarity=0.181 Sum_probs=30.9
Q ss_pred cccccCccccCCcCCc---cCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCc
Q 042791 458 KLIHLKYLNLSELGIE---RLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGET 517 (761)
Q Consensus 458 ~l~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 517 (761)
.+++++.|+|.+|.|+ ++-..+.+++.|++|+|+.|.....+-..--.+++|+.|-|.++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence 3456667777777665 23334456666666666665532211110023345555555554
No 240
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.00057 Score=66.68 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=49.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCC
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKG 116 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 116 (761)
+..-++++|++|+|||.||.++++ ++...-..+.|+ +..+++.++....... .....+.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~--~l~~~g~sv~f~------~~~el~~~Lk~~~~~~--------~~~~~l~~~l~- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGN--ELLKAGISVLFI------TAPDLLSKLKAAFDEG--------RLEEKLLRELK- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEE------EHHHHHHHHHHHHhcC--------chHHHHHHHhh-
Confidence 345789999999999999999999 555444567777 4445555555544431 11122222221
Q ss_pred ceEEEEEeCCCCCCccC
Q 042791 117 KKNFLVLDDVWDGDYNK 133 (761)
Q Consensus 117 ~~~LlvlDd~~~~~~~~ 133 (761)
+-=|+||||+.......
T Consensus 167 ~~dlLIiDDlG~~~~~~ 183 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQ 183 (254)
T ss_pred cCCEEEEecccCccCCH
Confidence 22499999995543333
No 241
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0024 Score=68.16 Aligned_cols=163 Identities=17% Similarity=0.083 Sum_probs=90.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCC--CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF--DQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSI 114 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 114 (761)
+.+.|.|.|+.|+|||+||+++++... +..+..+.+++|+.-. ..+.+++.+ ...+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHH
Confidence 457899999999999999999998422 4445666677765532 122222221 12234556
Q ss_pred CCceEEEEEeCCCC------CCccCchh----HHHhh----cC-CCCCcE--EEEEecch-hhhhhc----CCCCeeecC
Q 042791 115 KGKKNFLVLDDVWD------GDYNKWQP----FFRCL----KN-GLHGSK--ILVTTRNE-SVARMM----GSTDSISIK 172 (761)
Q Consensus 115 ~~~~~LlvlDd~~~------~~~~~~~~----l~~~~----~~-~~~~~~--iiiTtr~~-~~~~~~----~~~~~~~l~ 172 (761)
+..+-+||+||++- ....++.. +...+ .. ...+.+ +|.|.... .+.+.+ -....+.+.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 67888999999953 11112211 11111 11 123444 44444332 222221 123467889
Q ss_pred CCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCC-CchhHHHHH
Q 042791 173 QLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKG-LPLAAKVIG 221 (761)
Q Consensus 173 ~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~ 221 (761)
++...+..++++........ ....+...-+..+|.| .|.-++++.
T Consensus 572 ap~~~~R~~IL~~~~s~~~~----~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLS----DITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred CcchhHHHHHHHHHHHhhhh----hhhhHHHHHHHHhcCCccchhHHHHH
Confidence 99988888888876543221 1122334447778877 566666654
No 242
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.35 E-value=0.00042 Score=65.78 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=29.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEe
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 76 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~ 76 (761)
+-.++|.|.+|+||||++..+.. .....|+.+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 34567999999999999999987 57788877666543
No 243
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.34 E-value=0.00077 Score=63.44 Aligned_cols=182 Identities=12% Similarity=0.097 Sum_probs=104.7
Q ss_pred ceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhh----hccCCeeEEEEecCC--------
Q 042791 12 EVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEV----KRNFEKVIWVCVSNT-------- 79 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~----~~~f~~~~~v~~~~~-------- 79 (761)
.+.++++.-..+...... +..+...++|++|.||-|.+..+.++..- +-.-+...|.+-+..
T Consensus 14 ~l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred hcccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 356666666666665542 23567789999999999988777763110 111223334332221
Q ss_pred --C----C-------HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceE-EEEEeCCCCCCccCchhHHHhhcCCC
Q 042791 80 --F----D-------QIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKN-FLVLDDVWDGDYNKWQPFFRCLKNGL 145 (761)
Q Consensus 80 --~----~-------~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-LlvlDd~~~~~~~~~~~l~~~~~~~~ 145 (761)
. + .+-+..++++.+....+ + +.-..+.+ ++|+-++++-..+...+++.-...-.
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~q-----------i-e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQ-----------I-ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcc-----------h-hhccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 0 0 11123333333221100 0 00112333 67777776655666666666555555
Q ss_pred CCcEEEEEecc--hhhhhhcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCch
Q 042791 146 HGSKILVTTRN--ESVARMMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPL 215 (761)
Q Consensus 146 ~~~~iiiTtr~--~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 215 (761)
..+|+|+..-+ +-+.+.-.....+.+...+++|....+...+-+..- .-..+.+.+|++.++|+-.
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l----~lp~~~l~rIa~kS~~nLR 223 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL----QLPKELLKRIAEKSNRNLR 223 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc----cCcHHHHHHHHHHhcccHH
Confidence 56787766433 223332234567899999999999999987744322 2336789999999999763
No 244
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.34 E-value=6.2e-05 Score=80.24 Aligned_cols=166 Identities=23% Similarity=0.179 Sum_probs=79.1
Q ss_pred CceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccc
Q 042791 374 VKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIP 453 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp 453 (761)
..+..+.+..+.+..+...+..+++|++|++++|.+..-. . +..++.|+.|++++|.+.. +.
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~------~--l~~l~~L~~L~l~~N~i~~----------~~ 156 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE------G--LSTLTLLKELNLSGNLISD----------IS 156 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheecccccccccc------c--hhhccchhhheeccCcchh----------cc
Confidence 4555555555555555533555666666666665542211 0 3344556666666544432 21
Q ss_pred cchhcccccCccccCCcCCccCchh-hhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCC
Q 042791 454 ENVGKLIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTN 532 (761)
Q Consensus 454 ~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 532 (761)
.+..+..|+.+++++|.+..+... ...+.+|+.+++.+|.... + ..+..+..+..+++..|.+...- ++..+..
T Consensus 157 -~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~-i-~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~ 231 (414)
T KOG0531|consen 157 -GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE-I-EGLDLLKKLVLLSLLDNKISKLE--GLNELVM 231 (414)
T ss_pred -CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc-c-cchHHHHHHHHhhcccccceecc--Ccccchh
Confidence 233355666666666665555433 3555666666666554221 1 11222333333344444222211 1222222
Q ss_pred --CcccCceeecCccCCCCccCcccccCccCC
Q 042791 533 --LRTLDRFVVGGGVDGSNTCRLESLKNLQLR 562 (761)
Q Consensus 533 --L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 562 (761)
|+.+++.++.....+..+..+..+..|++.
T Consensus 232 ~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~ 263 (414)
T KOG0531|consen 232 LHLRELYLSGNRISRSPEGLENLKNLPVLDLS 263 (414)
T ss_pred HHHHHHhcccCccccccccccccccccccchh
Confidence 666776666655543334455555555554
No 245
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0027 Score=66.64 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=76.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGK 117 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 117 (761)
+.=|.+||++|+|||-||++|++ +.+..| +.+-.. +++...-++ ....+...++++-..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP--------ELlNkYVGE-----SErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP--------ELLNKYVGE-----SERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH--------HHHHHHhhh-----HHHHHHHHHHHhhcCC
Confidence 45678999999999999999999 444444 333221 222222111 1223333444444567
Q ss_pred eEEEEEeCCCC-----CC------ccCchhHHHhhcCC--CCCcEEEEEecchhhh-----hhcCCCCeeecCCCChHHH
Q 042791 118 KNFLVLDDVWD-----GD------YNKWQPFFRCLKNG--LHGSKILVTTRNESVA-----RMMGSTDSISIKQLAEEEC 179 (761)
Q Consensus 118 ~~LlvlDd~~~-----~~------~~~~~~l~~~~~~~--~~~~~iiiTtr~~~~~-----~~~~~~~~~~l~~l~~~ea 179 (761)
+++|+||++|. .+ ..-..+++..+... ..|.-||-+|.-+++. +.-..+....|+.-+.+|.
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 99999999954 11 11123344444432 2344455444433332 2112256788888899999
Q ss_pred HHHHHHHhhC
Q 042791 180 WSLFKQLAFF 189 (761)
Q Consensus 180 ~~l~~~~~~~ 189 (761)
.++++...-.
T Consensus 685 ~~ILK~~tkn 694 (802)
T KOG0733|consen 685 VAILKTITKN 694 (802)
T ss_pred HHHHHHHhcc
Confidence 9999988753
No 246
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.32 E-value=0.0013 Score=63.68 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=36.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (761)
....++.|+|++|+|||++|.+++. ........++|++.. ..+.+.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~--~~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAV--EAAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEECC-CCCHHHH
Confidence 3467999999999999999999987 344445678999887 4555443
No 247
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.30 E-value=0.001 Score=63.60 Aligned_cols=49 Identities=18% Similarity=0.290 Sum_probs=37.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAK 87 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (761)
+...++.|+|++|+|||+++.+++. ........++|++... .+...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHHHHH
Confidence 4468999999999999999999886 3444556799999876 56555443
No 248
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0056 Score=58.35 Aligned_cols=102 Identities=17% Similarity=0.244 Sum_probs=61.5
Q ss_pred CCCCCCceecccchHHHHHHHHhcCC------ccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCES------SEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT 79 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~------~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (761)
|.+.=++.-|-+...+.|.+...-+- .+.....+-+.++|++|.|||-||++|+.+ .. .-|+.++..
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--An-----STFFSvSSS 200 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--AN-----STFFSVSSS 200 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cC-----CceEEeehH
Confidence 55666778888888888887643221 000233678999999999999999999973 22 233444332
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-CCceEEEEEeCCCC
Q 042791 80 FDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSI-KGKKNFLVLDDVWD 128 (761)
Q Consensus 80 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDd~~~ 128 (761)
++.+..-++ .+.+...+-+.. ++++-+|++|++|.
T Consensus 201 --------DLvSKWmGE------SEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 --------DLVSKWMGE------SEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred --------HHHHHHhcc------HHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 222222111 122333332222 46888999999964
No 249
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0011 Score=68.16 Aligned_cols=160 Identities=13% Similarity=0.105 Sum_probs=84.0
Q ss_pred CCCCceeccc---chHHHHHHHHhcCCcc---CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCC
Q 042791 8 IDEGEVCGRV---DEKNELLSKLLCESSE---QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFD 81 (761)
Q Consensus 8 ~~~~~~vgr~---~~~~~l~~~l~~~~~~---~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~ 81 (761)
+.-++.-|-+ .|++++.++|..+..- ++.-++=|.++|++|.|||-||++++.+. .-. +|...+..+
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA--~VP----FF~~sGSEF- 373 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA--GVP----FFYASGSEF- 373 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc--CCC----eEeccccch-
Confidence 3445566765 4667777777765311 13347889999999999999999999842 212 222222221
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCC-----------CccCchhHHHhhcCCC--CCc
Q 042791 82 QIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDG-----------DYNKWQPFFRCLKNGL--HGS 148 (761)
Q Consensus 82 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~-----------~~~~~~~l~~~~~~~~--~~~ 148 (761)
++++ -.. .+..+.+.....-..-+++|+||++|.. ....+.+++..+..+. .|.
T Consensus 374 -dEm~----VGv--------GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGi 440 (752)
T KOG0734|consen 374 -DEMF----VGV--------GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGI 440 (752)
T ss_pred -hhhh----hcc--------cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCce
Confidence 1111 000 1111222222332356899999999651 1123345555566543 344
Q ss_pred EEEEEecchhhhhh-c---CC-CCeeecCCCChHHHHHHHHHHh
Q 042791 149 KILVTTRNESVARM-M---GS-TDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 149 ~iiiTtr~~~~~~~-~---~~-~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
.||-+|.-++..+. + +. +..+.|..-+-.-..++|..+.
T Consensus 441 IvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 441 IVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred EEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 33333443333322 1 22 3455666656555666666665
No 250
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.005 Score=67.62 Aligned_cols=188 Identities=16% Similarity=0.080 Sum_probs=105.0
Q ss_pred cCCCCCCceecccchHHHHH---HHHhcCCcc---CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 5 ISLIDEGEVCGRVDEKNELL---SKLLCESSE---QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~---~~l~~~~~~---~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
...+.-.++.|-++..++|+ ++|..+... +..-+|=|.++||+|+|||-||++++.+. +|=|+.++.
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-------gVPF~svSG 377 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSVSG 377 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-------CCceeeech
Confidence 34466677888766555555 555443311 12346778999999999999999999842 233444433
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCC---------------CccCchhHHHhhcC
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDG---------------DYNKWQPFFRCLKN 143 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~---------------~~~~~~~l~~~~~~ 143 (761)
. ++. +.+.... ...+.+.....-...+.+|.+|++|.. ....+++++.....
T Consensus 378 S----EFv----E~~~g~~-----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg 444 (774)
T KOG0731|consen 378 S----EFV----EMFVGVG-----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG 444 (774)
T ss_pred H----HHH----HHhcccc-----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC
Confidence 1 111 1111110 011112222232456889999988541 12234455555554
Q ss_pred CCCCc-EEEE-Eecchhhhhh-----cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchh
Q 042791 144 GLHGS-KILV-TTRNESVARM-----MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLA 216 (761)
Q Consensus 144 ~~~~~-~iii-Ttr~~~~~~~-----~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 216 (761)
+.... .|++ +|...++... -..+..+.+..-+..+..++|..++...... ....+..+ |+...-|++=|
T Consensus 445 f~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 445 FETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHH
Confidence 43333 2333 3443333322 1236788999999999999999988543221 23334445 88888888744
No 251
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.23 E-value=0.00025 Score=64.48 Aligned_cols=91 Identities=18% Similarity=0.219 Sum_probs=54.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhh-ccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKG 116 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~-~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 116 (761)
...+.+.|+.|+|||.+|+++++ .+. +.....+-++++......+....+...++... . ... ..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~-~--~v~-----~~----- 67 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPP-G--YVG-----AE----- 67 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTT-C--HHH-----HH-----
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccchHHhhhhhhhhccc-c--eee-----cc-----
Confidence 35789999999999999999998 555 45566777777665552221111111111110 0 000 00
Q ss_pred ceEEEEEeCCCCCCc-----------cCchhHHHhhcC
Q 042791 117 KKNFLVLDDVWDGDY-----------NKWQPFFRCLKN 143 (761)
Q Consensus 117 ~~~LlvlDd~~~~~~-----------~~~~~l~~~~~~ 143 (761)
..-+|++|+++.... .-++.++..+..
T Consensus 68 ~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcc
Confidence 111999999987666 557777776643
No 252
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.22 E-value=0.0042 Score=55.40 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCCC--CCccCchhHHHhhcCCCCCcEEEEEecchhhhhhc
Q 042791 103 FQSLMSRIQSSIKGKKNFLVLDDVWD--GDYNKWQPFFRCLKNGLHGSKILVTTRNESVARMM 163 (761)
Q Consensus 103 ~~~~~~~~~~~l~~~~~LlvlDd~~~--~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~~~ 163 (761)
-++..-.|.+++-+++-+++-|+--- +....|+.+.-.-.-...|+.|+++|.+.++...+
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 34445557777788888999996410 11222332222222234588899999998887665
No 253
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.21 E-value=0.0021 Score=58.73 Aligned_cols=38 Identities=32% Similarity=0.358 Sum_probs=29.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCC
Q 042791 41 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF 80 (761)
Q Consensus 41 v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~ 80 (761)
+.|+|++|+||||++.+++. .....-..++|+......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcch
Confidence 67999999999999999987 444444667788776543
No 254
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.20 E-value=0.00021 Score=79.60 Aligned_cols=134 Identities=22% Similarity=0.159 Sum_probs=76.2
Q ss_pred CCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccC
Q 042791 396 FDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERL 475 (761)
Q Consensus 396 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~l 475 (761)
-.+|+.|++++.. .+...++..+..-+|+|+.|.+++-.+..+ .+-.-..++++|..||+|+++++.+
T Consensus 121 r~nL~~LdI~G~~----~~s~~W~~kig~~LPsL~sL~i~~~~~~~~--------dF~~lc~sFpNL~sLDIS~TnI~nl 188 (699)
T KOG3665|consen 121 RQNLQHLDISGSE----LFSNGWPKKIGTMLPSLRSLVISGRQFDND--------DFSQLCASFPNLRSLDISGTNISNL 188 (699)
T ss_pred HHhhhhcCccccc----hhhccHHHHHhhhCcccceEEecCceecch--------hHHHHhhccCccceeecCCCCccCc
Confidence 3456777776644 234455555566677777777775443321 1222234667777777777777766
Q ss_pred chhhhccCCCcEEecCCccCcc-cccccccccccccEeecCCccccccc--c----ccCCCCCCCcccCceeec
Q 042791 476 PETLCELYNLQKLDIRRCRNLR-ELPAGIGKLMNMRTLLNGETYALKYM--P----IGISKLTNLRTLDRFVVG 542 (761)
Q Consensus 476 p~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~--p----~~l~~l~~L~~L~l~~~~ 542 (761)
..++++++|+.|.+++-.... .--..+..|++|+.||+|........ . +.-..+++|+.||.+++.
T Consensus 189 -~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 189 -SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred -HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 677777777777776543221 11123566777777777665322111 1 112236677777766554
No 255
>PHA00729 NTP-binding motif containing protein
Probab=97.20 E-value=0.0018 Score=60.79 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+...++|.|.+|+||||||.++++
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999997
No 256
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.19 E-value=0.002 Score=65.68 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=71.6
Q ss_pred eecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHH
Q 042791 13 VCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEG 92 (761)
Q Consensus 13 ~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 92 (761)
+||+...++++.+.+..... ....|.|+|++|+||+++|+++.. ...+.-...+-|+|.... ...+...+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~--~s~r~~~pfv~vnc~~~~-~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHY--LSKRWQGPLVKLNCAALS-ENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHH--hcCccCCCeEEEeCCCCC-hHHHHHHHhcc
Confidence 47777778887777765542 235688999999999999999986 222222334455565432 22221122110
Q ss_pred hcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCC-----------CCcEEEEEecc
Q 042791 93 LGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTRN 156 (761)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~~~~iiiTtr~ 156 (761)
-......... .....+. ....-.++||+++.-....+..+...+.... ...|||.||..
T Consensus 74 ~~g~~~ga~~--~~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 74 EAGAFTGAQK--RHQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred ccccccCccc--ccCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 0000000000 0000011 1233468999998766666677777665422 23478877753
No 257
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.19 E-value=0.0019 Score=59.71 Aligned_cols=38 Identities=37% Similarity=0.564 Sum_probs=30.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEE
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 75 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~ 75 (761)
..+..|++.|++|+||||+|+.++. .+...+..++++.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 3467999999999999999999998 6666666666663
No 258
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.19 E-value=0.00011 Score=61.30 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=73.7
Q ss_pred EEEEeecCCCCCccc---ccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccccc
Q 042791 378 HLGLNFQRGASFPMS---FFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPE 454 (761)
Q Consensus 378 ~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~ 454 (761)
.+.++.+.+..++.. +..-..|...+|++|.+ ..+++.+-..++.++.|+|++|.++ .+|.
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f------k~fp~kft~kf~t~t~lNl~~neis----------dvPe 94 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF------KKFPKKFTIKFPTATTLNLANNEIS----------DVPE 94 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchh------hhCCHHHhhccchhhhhhcchhhhh----------hchH
Confidence 344444444444443 33445566667777765 3456665666778888888855544 6888
Q ss_pred chhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCccccccc
Q 042791 455 NVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAG 502 (761)
Q Consensus 455 ~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~ 502 (761)
.+..++.|+.|+++.|.+...|..+..+.+|-.||..+|. ..++|-+
T Consensus 95 E~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 95 ELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 8888888888888888888888888888888888877766 4555544
No 259
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.0052 Score=62.40 Aligned_cols=91 Identities=13% Similarity=0.239 Sum_probs=50.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCC-CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF-DQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSI 114 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 114 (761)
.++++|++.|++|+||||++.+++. .....-..+.++.+.... ...+-+...++.++.......+...+.+.+...-
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~--~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAW--QFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHH--HHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 3468999999999999999999987 444333346666554322 1112222333333322222234444444444332
Q ss_pred CC-ceEEEEEeCCCC
Q 042791 115 KG-KKNFLVLDDVWD 128 (761)
Q Consensus 115 ~~-~~~LlvlDd~~~ 128 (761)
.. +.=++++|-.-+
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 21 234888998744
No 260
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.15 E-value=0.0015 Score=65.32 Aligned_cols=85 Identities=21% Similarity=0.291 Sum_probs=54.9
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCcHHHHHHH
Q 042791 35 QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESA-----SGLNEFQSLMSR 109 (761)
Q Consensus 35 ~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~ 109 (761)
-+..+++.|+|++|+||||||.+++. .....-..++|++....++.. .++.++... .+....++....
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~ 124 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEI 124 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 34568999999999999999988876 444455668899877655442 233333211 122344555555
Q ss_pred HHHHhC-CceEEEEEeCC
Q 042791 110 IQSSIK-GKKNFLVLDDV 126 (761)
Q Consensus 110 ~~~~l~-~~~~LlvlDd~ 126 (761)
+....+ ...-++|+|-+
T Consensus 125 ~~~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 125 AETLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHHHhhccCCcEEEEcch
Confidence 555443 44568999987
No 261
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.011 Score=54.85 Aligned_cols=101 Identities=18% Similarity=0.239 Sum_probs=57.7
Q ss_pred CCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCC
Q 042791 8 IDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF 80 (761)
Q Consensus 8 ~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~ 80 (761)
+.-++.=|-+-..+++.+...-+-.+ +-+.++-|.++|++|.|||.||+++++. ....| +.+..
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~--t~a~f-----irvvg-- 222 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH--TTAAF-----IRVVG-- 222 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc--cchhe-----eeecc--
Confidence 34444556666666666665443221 1355788899999999999999999983 33333 32222
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCC
Q 042791 81 DQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWD 128 (761)
Q Consensus 81 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~ 128 (761)
.++ +.+.++... ....+.++-.-.+.+-+|++|+++.
T Consensus 223 --sef---vqkylgegp------rmvrdvfrlakenapsiifideida 259 (408)
T KOG0727|consen 223 --SEF---VQKYLGEGP------RMVRDVFRLAKENAPSIIFIDEIDA 259 (408)
T ss_pred --HHH---HHHHhccCc------HHHHHHHHHHhccCCcEEEeehhhh
Confidence 111 222333321 1222223333346678999999854
No 262
>PRK06696 uridine kinase; Validated
Probab=97.14 E-value=0.0012 Score=63.68 Aligned_cols=48 Identities=25% Similarity=0.297 Sum_probs=38.1
Q ss_pred cccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc
Q 042791 15 GRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN 67 (761)
Q Consensus 15 gr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~ 67 (761)
-|.+.+++|.+.+.... .+++.+|+|.|.+|+||||+|++++. .+...
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~--~l~~~ 49 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAE--EIKKR 49 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHH--HHHHc
Confidence 36777888888887543 35688999999999999999999997 45433
No 263
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.13 E-value=0.0025 Score=70.37 Aligned_cols=135 Identities=15% Similarity=0.135 Sum_probs=77.5
Q ss_pred CCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHH
Q 042791 8 IDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAK 87 (761)
Q Consensus 8 ~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (761)
...+.++|....++++.+.+..... ....|.|+|++|+|||++|+.+.. ...+.-...+.++|..... ..+.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~--~s~r~~~pfv~i~c~~~~~-~~~~- 264 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHY--LSPRAKRPFVKVNCAALSE-TLLE- 264 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHH--hCCCCCCCeEEeecCCCCH-HHHH-
Confidence 3456799999999999988876542 234688999999999999999997 2222233445566655322 2221
Q ss_pred HHHHHhcCCCCCC-CcH-HHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCC-----------CCcEEEEEe
Q 042791 88 AIIEGLGESASGL-NEF-QSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTT 154 (761)
Q Consensus 88 ~i~~~l~~~~~~~-~~~-~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~~~~iiiTt 154 (761)
..+.+..... ... ......+ -....-.++||+++.-....+..+...+.... ...|||.||
T Consensus 265 ---~~lfg~~~~~~~~~~~~~~g~~---~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s 338 (534)
T TIGR01817 265 ---SELFGHEKGAFTGAIAQRKGRF---ELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAAT 338 (534)
T ss_pred ---HHHcCCCCCccCCCCcCCCCcc---cccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeC
Confidence 1222111100 000 0000000 01233468899998766666777777665422 124788876
Q ss_pred cc
Q 042791 155 RN 156 (761)
Q Consensus 155 r~ 156 (761)
..
T Consensus 339 ~~ 340 (534)
T TIGR01817 339 NR 340 (534)
T ss_pred CC
Confidence 54
No 264
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.12 E-value=0.0017 Score=65.08 Aligned_cols=84 Identities=24% Similarity=0.307 Sum_probs=54.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCcHHHHHHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESA-----SGLNEFQSLMSRI 110 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~ 110 (761)
+..+++-|+|++|+||||||.+++. ........++|++....++.. .++.++... .+....++..+.+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 4568999999999999999988886 444555678899877665543 233333211 1223445555555
Q ss_pred HHHhC-CceEEEEEeCC
Q 042791 111 QSSIK-GKKNFLVLDDV 126 (761)
Q Consensus 111 ~~~l~-~~~~LlvlDd~ 126 (761)
....+ +..-++|+|-+
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 44443 34568999987
No 265
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.12 E-value=0.0034 Score=60.85 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=36.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC------CeeEEEEecCCCCHHHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF------EKVIWVCVSNTFDQIRIA 86 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f------~~~~~v~~~~~~~~~~~~ 86 (761)
....++.|+|++|+|||++|.+++. ...... ..++|+.....++...+.
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~--~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAV--EAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHH--HhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 3467999999999999999998886 232333 568899887766655543
No 266
>PRK07261 topology modulation protein; Provisional
Probab=97.11 E-value=0.0012 Score=60.43 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.|+|+|++|+||||+|++++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 267
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.10 E-value=0.00066 Score=63.67 Aligned_cols=110 Identities=23% Similarity=0.276 Sum_probs=52.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh---
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSI--- 114 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l--- 114 (761)
.++++|+|++|+||||+++.+.. .+...-..++++ ......... +.+..+.. ..............-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~--~~~~~g~~v~~~-apT~~Aa~~----L~~~~~~~---a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAE--ALEAAGKRVIGL-APTNKAAKE----LREKTGIE---AQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHH--HHHHTT--EEEE-ESSHHHHHH----HHHHHTS----EEEHHHHTTEECCEECCS
T ss_pred CeEEEEEECCCCCHHHHHHHHHH--HHHhCCCeEEEE-CCcHHHHHH----HHHhhCcc---hhhHHHHHhcCCcccccc
Confidence 36888999999999999999886 444432233333 222111222 33332211 011111000000000
Q ss_pred ---CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchhh
Q 042791 115 ---KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESV 159 (761)
Q Consensus 115 ---~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~ 159 (761)
..+.-++|+|++...+...+..+...... .++|+|+..=..++
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~QL 133 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQL 133 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTSH
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcchh
Confidence 12234999999966544455555554443 37788877554433
No 268
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.018 Score=53.77 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=38.2
Q ss_pred CceecccchHHHHHHHHhcCCccC-------CCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQ-------QNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~-------~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
++.=|-+..++++.+.+--+-.+. -..++-|..+|++|.|||-+|++.+.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 456678889999888765543221 13467789999999999999999987
No 269
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.08 E-value=0.005 Score=57.80 Aligned_cols=129 Identities=19% Similarity=0.236 Sum_probs=71.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEe----------------------------cCCCC--------
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV----------------------------SNTFD-------- 81 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~----------------------------~~~~~-------- 81 (761)
...|+|.|++|+|||||...+..- ...-.+.+++.. -...+
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~l---d~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lp 107 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGL---DKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELP 107 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc---cCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhH
Confidence 458999999999999999988852 112222222211 01111
Q ss_pred ----------HHHHHHHHHHHhcCCC------C-CCCcHHHHHHHHHHHhCCceEEEEEeCCC-CCCccCchhHHHhhcC
Q 042791 82 ----------QIRIAKAIIEGLGESA------S-GLNEFQSLMSRIQSSIKGKKNFLVLDDVW-DGDYNKWQPFFRCLKN 143 (761)
Q Consensus 82 ----------~~~~~~~i~~~l~~~~------~-~~~~~~~~~~~~~~~l~~~~~LlvlDd~~-~~~~~~~~~l~~~~~~ 143 (761)
.......+++.++... + ....-++..-++.+++-.++-+|+-|+-- .-+...-..+...+..
T Consensus 108 l~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~ 187 (226)
T COG1136 108 LLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRE 187 (226)
T ss_pred HHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHH
Confidence 1233445555544431 1 12233444555677888888899999741 1112222333333332
Q ss_pred C--CCCcEEEEEecchhhhhhcCCCCeeec
Q 042791 144 G--LHGSKILVTTRNESVARMMGSTDSISI 171 (761)
Q Consensus 144 ~--~~~~~iiiTtr~~~~~~~~~~~~~~~l 171 (761)
. ..|..||+.|.++.++..+ +..+.+
T Consensus 188 ~~~~~g~tii~VTHd~~lA~~~--dr~i~l 215 (226)
T COG1136 188 LNKERGKTIIMVTHDPELAKYA--DRVIEL 215 (226)
T ss_pred HHHhcCCEEEEEcCCHHHHHhC--CEEEEE
Confidence 2 2366799999999998754 344444
No 270
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.07 E-value=0.0033 Score=60.53 Aligned_cols=43 Identities=23% Similarity=0.172 Sum_probs=33.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCC
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF 80 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~ 80 (761)
....++.|.|++|+||||+|.+++. .....-..++|++....+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLS 59 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCC
Confidence 4568999999999999999999987 444444568888765544
No 271
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0032 Score=58.76 Aligned_cols=60 Identities=20% Similarity=0.153 Sum_probs=42.8
Q ss_pred CCCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF 68 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f 68 (761)
-+.-++.=|-.++++++.+-...+--+ +-+.++-|.++|++|.|||-+|++|++ +....|
T Consensus 173 dvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 173 DVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred CcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 344455667888888888775543321 124577889999999999999999998 444443
No 272
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.05 E-value=0.0015 Score=66.73 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=75.7
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAII 90 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 90 (761)
+.++|+...+.++.+.+..... ....|.|.|.+|+||+++|+.+.. .....-...+.++|.... ...+...+.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~--~s~r~~~pfv~v~c~~~~-~~~~~~~lf 78 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHY--LSSRWQGPFISLNCAALN-ENLLDSELF 78 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHH--hCCccCCCeEEEeCCCCC-HHHHHHHHc
Confidence 4689999999999988876542 235688999999999999999986 222222334556666532 222222222
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCC-----------CCcEEEEEecc
Q 042791 91 EGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTRN 156 (761)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~~~~iiiTtr~ 156 (761)
..-........ ......+. ....=.++||+++.-....+..+...+.... ...|||+||..
T Consensus 79 g~~~~~~~g~~--~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 79 GHEAGAFTGAQ--KRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred cccccccCCcc--cccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 11100000000 00001111 1122357899998766666677776664322 12578887654
No 273
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0037 Score=70.22 Aligned_cols=123 Identities=15% Similarity=0.204 Sum_probs=78.0
Q ss_pred CceecccchHHHHHHHHhcCCccCCC--CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQN--GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKA 88 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~--~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~ 88 (761)
++.+|.++.+..|.+.+...+.+-.+ ..-...+.|+.|+|||-||++++. .+-+..+..+-++.+.. ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~------~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEF------QE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhh------hh-
Confidence 35788999999999998876633223 467888999999999999999997 45444444555544432 22
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHhCCceE-EEEEeCCCCCCccCchhHHHhhcCC
Q 042791 89 IIEGLGESASGLNEFQSLMSRIQSSIKGKKN-FLVLDDVWDGDYNKWQPFFRCLKNG 144 (761)
Q Consensus 89 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-LlvlDd~~~~~~~~~~~l~~~~~~~ 144 (761)
..++....+.-.. -+....+.+.++.+++ +|+||||+..+...+..+...+..+
T Consensus 633 -vskligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 -VSKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred -hhhccCCCccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 2233222222111 1223457777766654 8888999776665666555665543
No 274
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.03 E-value=0.0031 Score=61.57 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=36.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhc----cCCeeEEEEecCCCCHHHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSNTFDQIRIA 86 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~ 86 (761)
....++.|+|++|+|||++|.+++....... ....++|++....++.+.+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 3468999999999999999998874211111 13679999988766655443
No 275
>PRK09354 recA recombinase A; Provisional
Probab=97.03 E-value=0.0025 Score=64.31 Aligned_cols=85 Identities=20% Similarity=0.291 Sum_probs=55.9
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCcHHHHHHH
Q 042791 35 QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESA-----SGLNEFQSLMSR 109 (761)
Q Consensus 35 ~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~ 109 (761)
-+..+++-|+|++|+||||||.+++. .....-..++|++....++.. .++.++... .+....++..+.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i 129 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEI 129 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 34568999999999999999988886 444555778899887766643 233333211 122334555555
Q ss_pred HHHHhC-CceEEEEEeCC
Q 042791 110 IQSSIK-GKKNFLVLDDV 126 (761)
Q Consensus 110 ~~~~l~-~~~~LlvlDd~ 126 (761)
+...++ ...-+||+|-+
T Consensus 130 ~~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 130 ADTLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHHHhhcCCCCEEEEeCh
Confidence 555544 34558999987
No 276
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.01 E-value=0.017 Score=58.35 Aligned_cols=49 Identities=24% Similarity=0.201 Sum_probs=34.3
Q ss_pred eeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhH
Q 042791 168 SISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAA 217 (761)
Q Consensus 168 ~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 217 (761)
.++|++++++|+..++.-+....--.. ........+++....+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988764322211 1233445677777789999654
No 277
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0054 Score=67.21 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=74.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhC
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIK 115 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 115 (761)
..++.+.++|++|.|||.||++++. .....|-.+ ... .+.....+ .....+.+......+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v-----~~~--------~l~sk~vG-----esek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISV-----KGS--------ELLSKWVG-----ESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEe-----eCH--------HHhccccc-----hHHHHHHHHHHHHHc
Confidence 3466889999999999999999998 343333222 111 11111111 111222333334445
Q ss_pred CceEEEEEeCCCC-----CCc------cCchhHHHhhcCCC--CCcEEEEEecchhhhhh-c----CCCCeeecCCCChH
Q 042791 116 GKKNFLVLDDVWD-----GDY------NKWQPFFRCLKNGL--HGSKILVTTRNESVARM-M----GSTDSISIKQLAEE 177 (761)
Q Consensus 116 ~~~~LlvlDd~~~-----~~~------~~~~~l~~~~~~~~--~~~~iiiTtr~~~~~~~-~----~~~~~~~l~~l~~~ 177 (761)
..+.+|++|+++. ... .-...++..+.... .+..||-||-.+...+. + .....+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 7889999999954 111 12233333333222 23334444443322221 1 22568899999999
Q ss_pred HHHHHHHHHhh
Q 042791 178 ECWSLFKQLAF 188 (761)
Q Consensus 178 ea~~l~~~~~~ 188 (761)
+..+.|..+..
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999999874
No 278
>PHA02244 ATPase-like protein
Probab=97.00 E-value=0.0023 Score=64.45 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..|.|+|++|+|||++|++++.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999997
No 279
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.00 E-value=0.0049 Score=55.33 Aligned_cols=118 Identities=14% Similarity=0.038 Sum_probs=65.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeE---EEEecCCCCHHHHHHHHHHH---hcCCC----CCC----CcH
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVI---WVCVSNTFDQIRIAKAIIEG---LGESA----SGL----NEF 103 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~---~v~~~~~~~~~~~~~~i~~~---l~~~~----~~~----~~~ 103 (761)
...|.|++..|.||||.|-.++- +..++-..++ |+...........+..+.-. .+... .+. ...
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 46888999999999999987776 4444444444 44443233434444332000 01110 010 112
Q ss_pred HHHHHHHHHHhCCceE-EEEEeCCCC---CCccCchhHHHhhcCCCCCcEEEEEecch
Q 042791 104 QSLMSRIQSSIKGKKN-FLVLDDVWD---GDYNKWQPFFRCLKNGLHGSKILVTTRNE 157 (761)
Q Consensus 104 ~~~~~~~~~~l~~~~~-LlvlDd~~~---~~~~~~~~l~~~~~~~~~~~~iiiTtr~~ 157 (761)
.+..+..++.+....+ ++|+|++-. ...-+.+.+...+.....+.-||+|.|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2233334445544444 999999821 12234455666666666667899999973
No 280
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.00 E-value=0.008 Score=54.98 Aligned_cols=123 Identities=18% Similarity=0.199 Sum_probs=71.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC--------------------------------------
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT-------------------------------------- 79 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~-------------------------------------- 79 (761)
..+|+|.|++|+|||||.|.+.. +...-.+.+|+.....
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 46899999999999999999985 3333344455432100
Q ss_pred ------CCHHHHHHHHHHHhcCCC------CCCCcHHHHHHHHHHHhCCceEEEEEeCCCC-CCccCchhHHHhhcC-CC
Q 042791 80 ------FDQIRIAKAIIEGLGESA------SGLNEFQSLMSRIQSSIKGKKNFLVLDDVWD-GDYNKWQPFFRCLKN-GL 145 (761)
Q Consensus 80 ------~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~-~~~~~~~~l~~~~~~-~~ 145 (761)
...++...+++.+++..+ .+...-++..-+|.+.|.-++-++.+|+.-+ -+++....++..... ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 012334555555555432 1223334445567788887888999999832 112222233333332 33
Q ss_pred CCcEEEEEecchhhhhhc
Q 042791 146 HGSKILVTTRNESVARMM 163 (761)
Q Consensus 146 ~~~~iiiTtr~~~~~~~~ 163 (761)
.|-.+|+.|.+-..++..
T Consensus 185 eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 185 EGMTMIIVTHEMGFAREV 202 (240)
T ss_pred cCCeEEEEechhHHHHHh
Confidence 466688888887666653
No 281
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.97 E-value=0.0029 Score=72.19 Aligned_cols=136 Identities=18% Similarity=0.222 Sum_probs=78.7
Q ss_pred CCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHH
Q 042791 9 DEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKA 88 (761)
Q Consensus 9 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~ 88 (761)
..+.++|+...+.++.+.+..... ....|.|.|++|+|||++|+++.. .....-...+.++|.... ...+...
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~--~s~r~~~~~v~i~c~~~~-~~~~~~~ 446 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHN--LSGRNNRRMVKMNCAAMP-AGLLESD 446 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHH--hcCCCCCCeEEEecccCC-hhHhhhh
Confidence 445799999999998877765432 234688999999999999999997 233333445666666532 2222222
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCC-----------CCcEEEEEecc
Q 042791 89 IIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTRN 156 (761)
Q Consensus 89 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~~~~iiiTtr~ 156 (761)
+........... .......+. ....=.++||+++.-.......+...+.... ...|||.||..
T Consensus 447 lfg~~~~~~~g~--~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 447 LFGHERGAFTGA--SAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred hcCccccccccc--ccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 211111110000 001111121 1233469999998766666677777664321 24588888754
No 282
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.96 E-value=0.005 Score=58.83 Aligned_cols=124 Identities=20% Similarity=0.205 Sum_probs=71.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC-----CCHHHHHHHHHHHhcCCC------CC-CCcHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT-----FDQIRIAKAIIEGLGESA------SG-LNEFQ 104 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~-----~~~~~~~~~i~~~l~~~~------~~-~~~~~ 104 (761)
+..+++|+|.+|+||||+++.+.. +...-.+.+++...+. ....+-..++++.++... +. ...-+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 346899999999999999999996 4444455555543321 122334555666655432 11 11222
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCC-CCccCchhHHHhhcC--CCCCcEEEEEecchhhhhhc
Q 042791 105 SLMSRIQSSIKGKKNFLVLDDVWD-GDYNKWQPFFRCLKN--GLHGSKILVTTRNESVARMM 163 (761)
Q Consensus 105 ~~~~~~~~~l~~~~~LlvlDd~~~-~~~~~~~~l~~~~~~--~~~~~~iiiTtr~~~~~~~~ 163 (761)
...-.|.+++.-++-++|.|+.-. -+....++++..+.+ ...|...++.|.+-.+...+
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 223335677777888999998732 111222333333332 22356688888887666653
No 283
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.96 E-value=0.0057 Score=56.71 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=64.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC--CCCHHHHH------HHHHHHhcCCC------CCCCcH
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN--TFDQIRIA------KAIIEGLGESA------SGLNEF 103 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~--~~~~~~~~------~~i~~~l~~~~------~~~~~~ 103 (761)
..+++|.|+.|.|||||++.++.. .....+.+++...+ ........ .++++.++... .....-
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 468999999999999999999972 23344545443211 11222211 11344443221 111222
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCC-CCccCchhHHHhhcCC-CC-CcEEEEEecchhhh
Q 042791 104 QSLMSRIQSSIKGKKNFLVLDDVWD-GDYNKWQPFFRCLKNG-LH-GSKILVTTRNESVA 160 (761)
Q Consensus 104 ~~~~~~~~~~l~~~~~LlvlDd~~~-~~~~~~~~l~~~~~~~-~~-~~~iiiTtr~~~~~ 160 (761)
+...-.+.+.+-..+-++++|+-.. -+....+.+...+... .. +..||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 3333335556667788999998733 1222333344444332 12 55688888876544
No 284
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.032 Score=57.18 Aligned_cols=153 Identities=13% Similarity=0.078 Sum_probs=78.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceE
Q 042791 40 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKN 119 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (761)
-=.++||||.|||+++.++++ .+ .|+.+ =+..+...+-.+ ++.++.. ...+-
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn--~L--~ydIy-dLeLt~v~~n~d-Lr~LL~~----------------------t~~kS 288 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMAN--YL--NYDIY-DLELTEVKLDSD-LRHLLLA----------------------TPNKS 288 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHh--hc--CCceE-EeeeccccCcHH-HHHHHHh----------------------CCCCc
Confidence 346999999999999999998 22 23322 122222211122 2222221 23456
Q ss_pred EEEEeCCCCC------------------CccCchhHHHhhcC--CCC-CcEEE-EEecchh-----hhhhcCCCCeeecC
Q 042791 120 FLVLDDVWDG------------------DYNKWQPFFRCLKN--GLH-GSKIL-VTTRNES-----VARMMGSTDSISIK 172 (761)
Q Consensus 120 LlvlDd~~~~------------------~~~~~~~l~~~~~~--~~~-~~~ii-iTtr~~~-----~~~~~~~~~~~~l~ 172 (761)
+|||.|+|-. ....+.-++.++.. ... +-||| .||...+ +.+.-..+-.+.|.
T Consensus 289 IivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mg 368 (457)
T KOG0743|consen 289 ILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMG 368 (457)
T ss_pred EEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcC
Confidence 7778877431 01222334555443 222 23555 4555432 22211124467777
Q ss_pred CCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHHhhCC
Q 042791 173 QLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSK 227 (761)
Q Consensus 173 ~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~ 227 (761)
-=+.+.-..|+..+...+. .+.+..+|.+.-.|.-+.=..++..|-.+
T Consensus 369 yCtf~~fK~La~nYL~~~~-------~h~L~~eie~l~~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 369 YCTFEAFKTLASNYLGIEE-------DHRLFDEIERLIEETEVTPAQVAEELMKN 416 (457)
T ss_pred CCCHHHHHHHHHHhcCCCC-------CcchhHHHHHHhhcCccCHHHHHHHHhhc
Confidence 7788888888888764322 12344555554455544445555554444
No 285
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.95 E-value=0.0048 Score=57.59 Aligned_cols=88 Identities=22% Similarity=0.209 Sum_probs=50.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCC-CHHHHHHHHHHHhcCCC---CCCCcHHHHH-HHHHH
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF-DQIRIAKAIIEGLGESA---SGLNEFQSLM-SRIQS 112 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~-~~~~~ 112 (761)
|+++.++|+.|+||||.+.+++. +....-..+..++..... ...+-++..++.++... ....+..+.. +.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA--RLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHH--HHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 47899999999999999988887 444445557777765443 23355666677776432 1122233333 23333
Q ss_pred HhCCceEEEEEeCCC
Q 042791 113 SIKGKKNFLVLDDVW 127 (761)
Q Consensus 113 ~l~~~~~LlvlDd~~ 127 (761)
.-.++.=++++|-.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 222233478888663
No 286
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.04 Score=55.01 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=91.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhh-h-------cc-CC-eeEEEEe-cCCCCHHHHHHHHHHHhcCCCCCCCcHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEV-K-------RN-FE-KVIWVCV-SNTFDQIRIAKAIIEGLGESASGLNEFQS 105 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~-~-------~~-f~-~~~~v~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 105 (761)
-.++..++|+.|.||+++|+++++ .+ + .. .+ .+.++.. +.....+++. .+.+.+...
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~--~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~--------- 84 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLN--KFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFS--------- 84 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHH--HHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccC---------
Confidence 357777999999999999999987 33 1 11 11 1222211 1111222211 111111100
Q ss_pred HHHHHHHHhC-CceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEec-chhhhhh-cCCCCeeecCCCChHHHHHH
Q 042791 106 LMSRIQSSIK-GKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTR-NESVARM-MGSTDSISIKQLAEEECWSL 182 (761)
Q Consensus 106 ~~~~~~~~l~-~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr-~~~~~~~-~~~~~~~~l~~l~~~ea~~l 182 (761)
... +++-++|+|+++.........++..+..-+..+.+|++|. ...+.+. ......+++.++++++..+.
T Consensus 85 -------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 85 -------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAK 157 (299)
T ss_pred -------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHH
Confidence 001 4677899999977666677788888888666776666554 4555543 34467899999999999988
Q ss_pred HHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 183 FKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
+.... ...+.+..++..++|.=.|+..+
T Consensus 158 l~~~~----------~~~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 158 LLSKN----------KEKEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHcC----------CChhHHHHHHHHcCCHHHHHHHH
Confidence 87631 11233556666666622444443
No 287
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.93 E-value=0.00016 Score=67.54 Aligned_cols=39 Identities=23% Similarity=0.190 Sum_probs=18.4
Q ss_pred hhccCCCcEEecCCccCcccccc----cccccccccEeecCCc
Q 042791 479 LCELYNLQKLDIRRCRNLRELPA----GIGKLMNMRTLLNGET 517 (761)
Q Consensus 479 ~~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~~~ 517 (761)
+..|++|+..+||.|.+....|. .++.-..|.+|.+++|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 34455555555555544333332 2234445555555555
No 288
>PRK08118 topology modulation protein; Reviewed
Probab=96.93 E-value=0.0011 Score=60.32 Aligned_cols=34 Identities=32% Similarity=0.614 Sum_probs=24.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhh-ccCCeeEE
Q 042791 40 VISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIW 73 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~~~~~~-~~f~~~~~ 73 (761)
.|.|.|++|+||||+|+++++..... -.||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 57899999999999999999832222 23455554
No 289
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.92 E-value=0.0092 Score=56.93 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.++.+|+|.|++|+|||||++.+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999997
No 290
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.90 E-value=0.00067 Score=58.30 Aligned_cols=21 Identities=43% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
+|+|.|++|+||||+|+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999997
No 291
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.0061 Score=55.98 Aligned_cols=117 Identities=19% Similarity=0.173 Sum_probs=59.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC--CCHHHHHHHHHHHhc--CCCCC----------CCcH
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT--FDQIRIAKAIIEGLG--ESASG----------LNEF 103 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~--~~~~~~~~~i~~~l~--~~~~~----------~~~~ 103 (761)
..+++|.|+.|.|||||++.++.- .....+.+++..... ...... ...++ ..... ...-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~---~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL---YDPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC---CCCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 468999999999999999999972 223344444322111 011111 11111 00000 0111
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCC-CCccCchhHHHhhcCCCCCcEEEEEecchhhhh
Q 042791 104 QSLMSRIQSSIKGKKNFLVLDDVWD-GDYNKWQPFFRCLKNGLHGSKILVTTRNESVAR 161 (761)
Q Consensus 104 ~~~~~~~~~~l~~~~~LlvlDd~~~-~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~ 161 (761)
+...-.+...+-.++-++++|+-.. -+......+...+.....+..||++|.+.....
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 1122234455556777999998733 122223334444433223456888888866554
No 292
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.88 E-value=0.021 Score=57.05 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=41.7
Q ss_pred ceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHH
Q 042791 12 EVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (761)
.++-..+....+...+... +.|.|.|++|+||||+|++++. .+... .+.|.+....+..++
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~--~l~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA--RLNWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH--HHCCC---eEEEEecCCCChhhc
Confidence 3555556667777777532 4689999999999999999998 45433 234555555555443
No 293
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.00017 Score=67.61 Aligned_cols=100 Identities=23% Similarity=0.238 Sum_probs=73.7
Q ss_pred CCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCcc
Q 042791 395 EFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIER 474 (761)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~ 474 (761)
++.+.+.|++++|.+.+ ..+-.+|+.|++|.|+-|+++. + ..+..|++|+.|+|+.|.|..
T Consensus 17 dl~~vkKLNcwg~~L~D--------Isic~kMp~lEVLsLSvNkIss----------L-~pl~rCtrLkElYLRkN~I~s 77 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD--------ISICEKMPLLEVLSLSVNKISS----------L-APLQRCTRLKELYLRKNCIES 77 (388)
T ss_pred HHHHhhhhcccCCCccH--------HHHHHhcccceeEEeecccccc----------c-hhHHHHHHHHHHHHHhccccc
Confidence 35567888888887632 1235789999999999887764 4 237789999999999999887
Q ss_pred Cch--hhhccCCCcEEecCCccCcccccc-----cccccccccEee
Q 042791 475 LPE--TLCELYNLQKLDIRRCRNLRELPA-----GIGKLMNMRTLL 513 (761)
Q Consensus 475 lp~--~~~~l~~L~~L~l~~~~~~~~lp~-----~~~~l~~L~~L~ 513 (761)
+.+ .+.++++|+.|.|..|.=.+.-+. .+..|++|+.||
T Consensus 78 ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 78 LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 653 467899999999987654433332 346788888876
No 294
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.87 E-value=0.0038 Score=57.80 Aligned_cols=118 Identities=15% Similarity=0.087 Sum_probs=59.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhc--CCC-------------CCCCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLG--ESA-------------SGLNE 102 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~--~~~-------------~~~~~ 102 (761)
..+++|.|+.|.|||||++.++.. .....+.+++.... .......+...++ .+. .....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~---~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD---LKPQQGEITLDGVP---VSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc---CCCCCCEEEECCEE---HHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 458999999999999999999973 12223333332111 1111111111111 000 01111
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCCC-CCccCchhHHHhhcCCCCCcEEEEEecchhhhh
Q 042791 103 FQSLMSRIQSSIKGKKNFLVLDDVWD-GDYNKWQPFFRCLKNGLHGSKILVTTRNESVAR 161 (761)
Q Consensus 103 ~~~~~~~~~~~l~~~~~LlvlDd~~~-~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~ 161 (761)
-+...-.+.+.+-.++-++++|+... -+....+.+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 12223334555566778999998743 122223333344433223566888888866554
No 295
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.86 E-value=0.012 Score=58.95 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=37.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhcc-CCeeEEEEecCCCCHHHHHHHHHHHh
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSNTFDQIRIAKAIIEGL 93 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~~~i~~~l 93 (761)
..++.|.|++|+||||++.+++. ..... -..++|++... +..++...+....
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~--~~~~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYAL--DLITQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH--HHHHhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 45888999999999999999887 33333 45688887765 4455665555443
No 296
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.85 E-value=0.0044 Score=67.75 Aligned_cols=136 Identities=14% Similarity=0.203 Sum_probs=79.3
Q ss_pred CCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHH
Q 042791 9 DEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKA 88 (761)
Q Consensus 9 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~ 88 (761)
....++|+...++++.+.+.... .....|.|+|+.|+|||++|+++.. .....-...+.++|..... ..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~--~s~r~~~p~v~v~c~~~~~-~~~e~~ 257 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHA--ASPRADKPLVYLNCAALPE-SLAESE 257 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHH--hCCcCCCCeEEEEcccCCh-HHHHHH
Confidence 45679999999999998887764 2345788999999999999999997 3333334456677765432 211111
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCC-----------CCcEEEEEecc
Q 042791 89 IIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTRN 156 (761)
Q Consensus 89 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~~~~iiiTtr~ 156 (761)
+............. .....+. ....=-++||+++.-....+..+...+.... ...|||.||..
T Consensus 258 lfG~~~g~~~ga~~--~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 258 LFGHVKGAFTGAIS--NRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred hcCccccccCCCcc--cCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 11111110000000 0000011 1122246899998876666777777665422 13578887754
No 297
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.85 E-value=0.0059 Score=59.44 Aligned_cols=87 Identities=18% Similarity=0.159 Sum_probs=54.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCC------------------
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESA------------------ 97 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~------------------ 97 (761)
+...++.|+|++|+|||++|.+++. .....-..++|+.... +...+.+.+.+ ++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~--~~~~~g~~~~y~~~e~--~~~~~~~~~~~-~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVY--GALKQGKKVYVITTEN--TSKSYLKQMES-VKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHH--HHHhCCCEEEEEEcCC--CHHHHHHHHHH-CCCChhHHHhCCCceEEeccccc
Confidence 4567899999999999999999875 3333456788998865 34444444322 22100
Q ss_pred --CCCCcHHHHHHHHHHHhCC-ceEEEEEeCCC
Q 042791 98 --SGLNEFQSLMSRIQSSIKG-KKNFLVLDDVW 127 (761)
Q Consensus 98 --~~~~~~~~~~~~~~~~l~~-~~~LlvlDd~~ 127 (761)
......+.....+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112234555666666543 55589999973
No 298
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.011 Score=63.65 Aligned_cols=183 Identities=17% Similarity=0.118 Sum_probs=97.3
Q ss_pred CCCCCCceecccchHHHHHH---HHhcCCcc---CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC
Q 042791 6 SLIDEGEVCGRVDEKNELLS---KLLCESSE---QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT 79 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~---~l~~~~~~---~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (761)
..+...+..|.++..+++.+ .|..+..- +..-++-|.++|++|.|||.||++++.+. .-.| ...+.
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA--~VPF-----f~iSG- 216 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVPF-----FSISG- 216 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc--CCCc-----eeccc-
Confidence 34556677888776666554 45443210 12347889999999999999999999843 2222 11111
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCC--------------ccCchhHHHhhcCCC
Q 042791 80 FDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGD--------------YNKWQPFFRCLKNGL 145 (761)
Q Consensus 80 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~--------------~~~~~~l~~~~~~~~ 145 (761)
.++. ++. .+ .......+...++.++-+++|++|++|-.. .+.+++++.....+.
T Consensus 217 ---S~FV-emf--VG------vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~ 284 (596)
T COG0465 217 ---SDFV-EMF--VG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 284 (596)
T ss_pred ---hhhh-hhh--cC------CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC
Confidence 1110 000 00 011122233344445567999999885411 123444554444443
Q ss_pred --CCcEEEEEecc-hhhh-----hhcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 146 --HGSKILVTTRN-ESVA-----RMMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 146 --~~~~iiiTtr~-~~~~-----~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
.|. |+++..+ +++. +.-..+.++.++..+-....+++.-++-..... .... ...|++.+-|.-
T Consensus 285 ~~~gv-iviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vd----l~~iAr~tpGfs 355 (596)
T COG0465 285 GNEGV-IVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVD----LKKIARGTPGFS 355 (596)
T ss_pred CCCce-EEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCC----HHHHhhhCCCcc
Confidence 233 3433332 3333 222336678888888888888888776432221 1111 233777776654
No 299
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.84 E-value=0.0007 Score=71.67 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=41.1
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+++|.++.++++.+.|.........+.+++.++||+|+||||||+.+++
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 35899999999999998433322245678999999999999999999996
No 300
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.84 E-value=0.011 Score=66.26 Aligned_cols=158 Identities=14% Similarity=0.086 Sum_probs=81.6
Q ss_pred ceecccchHHHHHHHHhcCCcc------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHH
Q 042791 12 EVCGRVDEKNELLSKLLCESSE------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~~~~~~------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (761)
++.|.+...+++.+.+.....+ ...-++-|.++|++|+|||++|+.++. +....| +.+..+ ++
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~--~~~~~f---~~is~~------~~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FTISGS------DF 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCCE---EEEehH------Hh
Confidence 3566666666555443321100 012245589999999999999999987 333222 222221 11
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCc----------c----CchhHHHhhcCC--CCCcE
Q 042791 86 AKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDY----------N----KWQPFFRCLKNG--LHGSK 149 (761)
Q Consensus 86 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~----------~----~~~~l~~~~~~~--~~~~~ 149 (761)
.. .... .........+.......+.+|+||++|.... . .+..++..+... ..+.-
T Consensus 222 ~~----~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 VE----MFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred HH----hhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 11 0000 0111222223333345678999999965210 0 112222222222 22344
Q ss_pred EEEEecchhhhhh-c----CCCCeeecCCCChHHHHHHHHHHhhC
Q 042791 150 ILVTTRNESVARM-M----GSTDSISIKQLAEEECWSLFKQLAFF 189 (761)
Q Consensus 150 iiiTtr~~~~~~~-~----~~~~~~~l~~l~~~ea~~l~~~~~~~ 189 (761)
+|.||...+..+. + .....+.+...+.++..+++..+..+
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 5556665443221 1 12567889999999999999887643
No 301
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.84 E-value=0.00043 Score=60.96 Aligned_cols=36 Identities=39% Similarity=0.273 Sum_probs=29.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEE
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 75 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~ 75 (761)
+.+|.+.|.+|+||||||+++.+ ++......+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 46899999999999999999998 6666666666664
No 302
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.83 E-value=0.005 Score=62.04 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=41.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhh----ccCCeeEEEEecCCCCHHHHHHHHHHHhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIWVCVSNTFDQIRIAKAIIEGLG 94 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~----~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (761)
....++-|+|++|+|||+++.+++-..... ..-..++|++....++.+.+.+ +++.++
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 346788899999999999998776421221 1235789999998888887754 455554
No 303
>PRK06762 hypothetical protein; Provisional
Probab=96.81 E-value=0.035 Score=50.69 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
++.|+|.|++|+||||+|+++++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999997
No 304
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.80 E-value=0.0066 Score=59.88 Aligned_cols=131 Identities=24% Similarity=0.293 Sum_probs=71.0
Q ss_pred cccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChh-hhccCCeeEEE----EecCC----------
Q 042791 15 GRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDE-VKRNFEKVIWV----CVSNT---------- 79 (761)
Q Consensus 15 gr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~-~~~~f~~~~~v----~~~~~---------- 79 (761)
+|..+..--.++|.. +..+.|.+.|.+|.|||.||-+..-..- .++.|..++-. .+++.
T Consensus 228 prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEe 301 (436)
T COG1875 228 PRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEE 301 (436)
T ss_pred cccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhh
Confidence 355555555666764 4578999999999999999966554212 23445443321 12221
Q ss_pred ---CCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH----------HHhCCc---eEEEEEeCCCCCCccCchhHHHhhcC
Q 042791 80 ---FDQIRIAKAIIEGLGESASGLNEFQSLMSRIQ----------SSIKGK---KNFLVLDDVWDGDYNKWQPFFRCLKN 143 (761)
Q Consensus 80 ---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~----------~~l~~~---~~LlvlDd~~~~~~~~~~~l~~~~~~ 143 (761)
+....+++.+-......... ....+.+. .+++++ +.++|+|++++-.+.+ +...+-+
T Consensus 302 Km~PWmq~i~DnLE~L~~~~~~~----~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTphe---ikTiltR 374 (436)
T COG1875 302 KMGPWMQAIFDNLEVLFSPNEPG----DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHE---LKTILTR 374 (436)
T ss_pred hccchHHHHHhHHHHHhcccccc----hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHH---HHHHHHh
Confidence 12233333332222222111 22222221 122343 4599999996644433 4444556
Q ss_pred CCCCcEEEEEecchh
Q 042791 144 GLHGSKILVTTRNES 158 (761)
Q Consensus 144 ~~~~~~iiiTtr~~~ 158 (761)
.+.|+||+.|.-..+
T Consensus 375 ~G~GsKIVl~gd~aQ 389 (436)
T COG1875 375 AGEGSKIVLTGDPAQ 389 (436)
T ss_pred ccCCCEEEEcCCHHH
Confidence 778999999865443
No 305
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.79 E-value=0.00051 Score=75.65 Aligned_cols=117 Identities=22% Similarity=0.202 Sum_probs=62.1
Q ss_pred CCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcC-Ccc
Q 042791 396 FDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELG-IER 474 (761)
Q Consensus 396 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~-i~~ 474 (761)
++.|+.|.+..+.- ........+...+++|+.|+++++..... .... ........+.+|+.|+++.+. ++.
T Consensus 187 ~~~L~~l~l~~~~~----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~-~~~~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSK----ITDDSLDALALKCPNLEELDLSGCCLLIT---LSPL-LLLLLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred CchhhHhhhccccc----CChhhHHHHHhhCchhheecccCcccccc---cchh-HhhhhhhhcCCcCccchhhhhccCc
Confidence 56666666655531 11111233456777888888775311100 0010 111123445777788887776 542
Q ss_pred C-chhh-hccCCCcEEecCCccCcc--cccccccccccccEeecCCcccc
Q 042791 475 L-PETL-CELYNLQKLDIRRCRNLR--ELPAGIGKLMNMRTLLNGETYAL 520 (761)
Q Consensus 475 l-p~~~-~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~ 520 (761)
. -..+ ..+++|++|.+.+|..++ .+-.....+++|++|++++|...
T Consensus 259 ~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 259 IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 1 1222 337788888877776422 23333466777888888877554
No 306
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.012 Score=61.00 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=53.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhh--ccCCeeEEEEecCCCCHH-HHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVK--RNFEKVIWVCVSNTFDQI-RIAKAIIEGLGESASGLNEFQSLMSRIQS 112 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~--~~f~~~~~v~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 112 (761)
..+++|.++|+.|+||||.+.+++...... ..-..+..+++....... .-+...++.++...........+...+.+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 346899999999999999998888622211 123456666665432222 22444455555433333344444444443
Q ss_pred HhCCceEEEEEeCCCC
Q 042791 113 SIKGKKNFLVLDDVWD 128 (761)
Q Consensus 113 ~l~~~~~LlvlDd~~~ 128 (761)
. ...-++++|.+..
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 3456899999855
No 307
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.0081 Score=58.70 Aligned_cols=90 Identities=20% Similarity=0.202 Sum_probs=56.7
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcC-CCCCCCcHHH---HHHHH
Q 042791 35 QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGE-SASGLNEFQS---LMSRI 110 (761)
Q Consensus 35 ~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~---~~~~~ 110 (761)
-+..+++=|+|+.|+||||+|.+++- ..+.....++|++..+.+++..+..-....+.. -..+..+.++ +++.+
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 35678999999999999999988776 445555589999999988887654322221211 1122233333 33333
Q ss_pred HHHhCCceEEEEEeCC
Q 042791 111 QSSIKGKKNFLVLDDV 126 (761)
Q Consensus 111 ~~~l~~~~~LlvlDd~ 126 (761)
......+--|+|+|-+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 3333333458999988
No 308
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.76 E-value=0.017 Score=60.98 Aligned_cols=86 Identities=17% Similarity=0.182 Sum_probs=49.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhh--ccCCeeEEEEecCCCC-HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVK--RNFEKVIWVCVSNTFD-QIRIAKAIIEGLGESASGLNEFQSLMSRIQSSI 114 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~--~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 114 (761)
.+++.+.|++|+||||++.+++. ... .....+.+++...... ...-+...++.++.......+..+....+.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~--~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA--RYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-
Confidence 46899999999999999988876 333 3334577776544321 11223333333443322233334444444432
Q ss_pred CCceEEEEEeCCC
Q 042791 115 KGKKNFLVLDDVW 127 (761)
Q Consensus 115 ~~~~~LlvlDd~~ 127 (761)
. ..=++|+|..-
T Consensus 298 ~-~~DlVlIDt~G 309 (424)
T PRK05703 298 R-DCDVILIDTAG 309 (424)
T ss_pred C-CCCEEEEeCCC
Confidence 2 34589999763
No 309
>PTZ00494 tuzin-like protein; Provisional
Probab=96.74 E-value=0.096 Score=53.60 Aligned_cols=170 Identities=15% Similarity=0.154 Sum_probs=99.8
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (761)
.+....++|.|++|...+.+.|...+ ..-+|++++.|.-|.|||+|++..... .--..+||++... ++-
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrk-----E~~paV~VDVRg~---EDt 434 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRV-----EGVALVHVDVGGT---EDT 434 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHH-----cCCCeEEEEecCC---cch
Confidence 34456779999999998888887765 346899999999999999999877752 1224667877654 334
Q ss_pred HHHHHHHhcCCCCC-CCc-HHHHHHHHHH---HhCCceEEEEEeCCCCCC-ccCchhHHHhhcCCCCCcEEEEEecchhh
Q 042791 86 AKAIIEGLGESASG-LNE-FQSLMSRIQS---SIKGKKNFLVLDDVWDGD-YNKWQPFFRCLKNGLHGSKILVTTRNESV 159 (761)
Q Consensus 86 ~~~i~~~l~~~~~~-~~~-~~~~~~~~~~---~l~~~~~LlvlDd~~~~~-~~~~~~l~~~~~~~~~~~~iiiTtr~~~~ 159 (761)
++.+.+.++-.... ..+ ++-+.+.... ...++..+||+-==+-.+ ..-+..... +.-...-+.|++----+.+
T Consensus 435 LrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~va-LacDrRlCHvv~EVplESL 513 (664)
T PTZ00494 435 LRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVS-LVSDCQACHIVLAVPMKAL 513 (664)
T ss_pred HHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHH-HHccchhheeeeechHhhh
Confidence 55666777654322 122 2223333322 234666677764211000 011111111 1112223556655443332
Q ss_pred hhh---cCCCCeeecCCCChHHHHHHHHHHh
Q 042791 160 ARM---MGSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 160 ~~~---~~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
-.. +..-..|-++.|+.++|.++..+..
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 211 2223578999999999999987754
No 310
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.73 E-value=0.0027 Score=65.29 Aligned_cols=113 Identities=17% Similarity=0.154 Sum_probs=67.7
Q ss_pred eecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHH
Q 042791 13 VCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEG 92 (761)
Q Consensus 13 ~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 92 (761)
++|+++....+...+... +.+.+.|++|+|||++|+.++. ..... ...+.+.......++.....-.
T Consensus 26 ~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~--~l~~~---~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 26 VVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALAR--ALGLP---FVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred eeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHH--HhCCC---eEEEecCCCCCHHHhcCchhHh
Confidence 899988888888777754 3688999999999999999997 44433 4455666666666543322222
Q ss_pred hcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcC
Q 042791 93 LGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKN 143 (761)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 143 (761)
............. . -.....+.++.+|+++.........+...+..
T Consensus 93 ~~~~~~~~~~~~~--g---pl~~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 93 ALLLEPGEFRFVP--G---PLFAAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred hhhccCCeEEEec--C---CcccccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 1100000000000 0 00011125999999988666666666666543
No 311
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.73 E-value=0.023 Score=68.43 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
.++-|.++|++|+|||.||+++|.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 3567889999999999999999984
No 312
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.71 E-value=0.0084 Score=58.34 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=52.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccC-CeeEEEEecCCC-CHHHHHHHHHHHhcC-------CCCCCCcHH---
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSNTF-DQIRIAKAIIEGLGE-------SASGLNEFQ--- 104 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f-~~~~~v~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~--- 104 (761)
+.+.++|.|.+|+|||||+.++++ ..+.+| +.++++-++... ...++.+.+...-.. ...+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 456789999999999999999998 555555 445555555543 334555555432111 111111111
Q ss_pred --HHHHHHHHHh--C-CceEEEEEeCC
Q 042791 105 --SLMSRIQSSI--K-GKKNFLVLDDV 126 (761)
Q Consensus 105 --~~~~~~~~~l--~-~~~~LlvlDd~ 126 (761)
...-.+.+++ + ++.+|+++|++
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1222334444 3 78999999998
No 313
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.70 E-value=0.013 Score=51.92 Aligned_cols=105 Identities=19% Similarity=0.203 Sum_probs=57.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGK 117 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 117 (761)
..+++|.|+.|.|||||++.++.. .....+.+++.... .++-- ++....+...-.+...+-.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE---LEPDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC---CCCCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcC
Confidence 468899999999999999999973 22334444432110 00000 00112222233345556667
Q ss_pred eEEEEEeCCCC-CCccCchhHHHhhcCCCCCcEEEEEecchhhhh
Q 042791 118 KNFLVLDDVWD-GDYNKWQPFFRCLKNGLHGSKILVTTRNESVAR 161 (761)
Q Consensus 118 ~~LlvlDd~~~-~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~ 161 (761)
+-++++|+-.. -+......+...+... +..||++|.+.....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 77999998733 2223333444444433 235777877755443
No 314
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.69 E-value=0.0053 Score=55.77 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=61.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCC--CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF--DQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIK 115 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 115 (761)
..+++|.|+.|.|||||.+.++.. .....+.+++...... +..+.. ...++.. ++....+...-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDAR---RAGIAMV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHH---hcCeEEE-EecCHHHHHHHHHHHHHh
Confidence 458899999999999999999962 2334455554322111 111111 1111110 112222333334555666
Q ss_pred CceEEEEEeCCCC-CCccCchhHHHhhcCC-CCCcEEEEEecchhhh
Q 042791 116 GKKNFLVLDDVWD-GDYNKWQPFFRCLKNG-LHGSKILVTTRNESVA 160 (761)
Q Consensus 116 ~~~~LlvlDd~~~-~~~~~~~~l~~~~~~~-~~~~~iiiTtr~~~~~ 160 (761)
.++-++++|+-.. -+......+...+... ..+..||++|.+....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 6778999998733 2222333344444332 2355688888886543
No 315
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.048 Score=59.33 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=62.2
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCccC------CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSEQ------QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~------~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
.|.+.=++.=|-++...+|.+-+.-+-.++ -.+..=|.+||++|.|||-+|++|+-+ .. .-|+.+-.
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE--cs-----L~FlSVKG 738 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE--CS-----LNFLSVKG 738 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh--ce-----eeEEeecC
Confidence 566666777777777777777655433221 122334679999999999999999972 22 23444443
Q ss_pred CCCHHHHHHHHHHH-hcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCC
Q 042791 79 TFDQIRIAKAIIEG-LGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWD 128 (761)
Q Consensus 79 ~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~ 128 (761)
+ +++.. ++.+ .+...+...++-...+++|++|++|.
T Consensus 739 P--------ELLNMYVGqS------E~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 739 P--------ELLNMYVGQS------EENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred H--------HHHHHHhcch------HHHHHHHHHHhhccCCeEEEeccccc
Confidence 2 22222 2222 12233333344456899999999976
No 316
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=96.68 E-value=0.013 Score=60.60 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=77.7
Q ss_pred CccccCCCCCCce-ecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC
Q 042791 1 RVRTISLIDEGEV-CGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT 79 (761)
Q Consensus 1 ~~~~~~~~~~~~~-vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (761)
|+++.|...-.+| |||+.+++.+.+.|.... .+....-+|.|.-|.|||.+.+.+... .....| .+..+.++..
T Consensus 14 r~GvVP~~Gl~~~~VGr~~e~~~l~~~l~~v~---~G~s~~kfi~G~YGsGKTf~l~~i~~~-A~~~~f-vvs~v~ls~e 88 (416)
T PF10923_consen 14 RAGVVPRIGLDHIAVGREREIEALDRDLDRVA---DGGSSFKFIRGEYGSGKTFFLRLIRER-ALEKGF-VVSEVDLSPE 88 (416)
T ss_pred hCCCCCcccCcceeechHHHHHHHHHHHHHHh---CCCCeEEEEEeCCCCcHHHHHHHHHHH-HHHcCC-EEEEEecCCC
Confidence 4566677766775 999999999999987665 456678889999999999999999873 334444 4677777664
Q ss_pred C-------CHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHH
Q 042791 80 F-------DQIRIAKAIIEGLGESASGLN-EFQSLMSRIQSS 113 (761)
Q Consensus 80 ~-------~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~ 113 (761)
. ....+++.+.+.+........ .+..+++.+...
T Consensus 89 ~~lh~~~g~~~~~Yr~l~~nL~t~~~p~G~al~~ild~wi~~ 130 (416)
T PF10923_consen 89 RPLHGTGGQLEALYRELMRNLSTKTKPEGGALRSILDRWIYN 130 (416)
T ss_pred cccccccccHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHH
Confidence 3 355789999998876654333 455555555443
No 317
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.00012 Score=68.76 Aligned_cols=96 Identities=19% Similarity=0.183 Sum_probs=55.6
Q ss_pred hcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccCCCcccccCCccceeeccccccccc-----CCCCC
Q 042791 648 LTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLGIEENIIAFPKLKYLKIWATEELEE-----TTDIP 722 (761)
Q Consensus 648 l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~l~ 722 (761)
+.+.++|++++|. ++++.....+| .++.|.++-|.++.+.+ +..|++|++|+|..|.+... +.++|
T Consensus 18 l~~vkKLNcwg~~-L~DIsic~kMp-------~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISICEKMP-------LLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHHHhcc-------cceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 3455555555552 33333222333 33444445555555332 66788888888877766544 66788
Q ss_pred ccceEeeecCCCCcCCCcc-----cCCCCCccEEE
Q 042791 723 RLSSLTIWYCPKLKVLPDY-----LLQTTALQELR 752 (761)
Q Consensus 723 ~L~~L~l~~~~~l~~l~~~-----l~~l~~L~~L~ 752 (761)
+|+.|.|..|+--+.-+.. +..+|+|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888888887755433322 34477777765
No 318
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.68 E-value=0.0096 Score=54.32 Aligned_cols=118 Identities=14% Similarity=0.049 Sum_probs=66.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC---CCCHHHHHHHHH--HH--hcCCC--CCCC------c
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN---TFDQIRIAKAII--EG--LGESA--SGLN------E 102 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~---~~~~~~~~~~i~--~~--l~~~~--~~~~------~ 102 (761)
...|.|+|..|-||||.|-.++- +..++-..|..+..-+ .......+..+. .. .+... .... .
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 46899999999999999988776 4444444455554433 223333333321 00 01110 0001 1
Q ss_pred HHHHHHHHHHHhCCceE-EEEEeCCCC---CCccCchhHHHhhcCCCCCcEEEEEecch
Q 042791 103 FQSLMSRIQSSIKGKKN-FLVLDDVWD---GDYNKWQPFFRCLKNGLHGSKILVTTRNE 157 (761)
Q Consensus 103 ~~~~~~~~~~~l~~~~~-LlvlDd~~~---~~~~~~~~l~~~~~~~~~~~~iiiTtr~~ 157 (761)
.....+..++.+....+ ++|||++-. ...-+.+.+...+.....+.-||+|.|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12223333445544444 999999822 22334556666676666677899999973
No 319
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.67 E-value=0.0084 Score=59.81 Aligned_cols=86 Identities=21% Similarity=0.213 Sum_probs=48.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhcc--CCeeEEEEecCCCC-HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSNTFD-QIRIAKAIIEGLGESASGLNEFQSLMSRIQSS 113 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~--f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 113 (761)
+.+++.+.|+.|+||||++.+++. ..... -..+.+++...... ...-+....+.++.......+...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~--~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA--RFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc
Confidence 567999999999999999999887 44322 24566776544321 22223333333433322223334444433332
Q ss_pred hCCceEEEEEeCC
Q 042791 114 IKGKKNFLVLDDV 126 (761)
Q Consensus 114 l~~~~~LlvlDd~ 126 (761)
.+ .=+|++|..
T Consensus 271 -~~-~d~vliDt~ 281 (282)
T TIGR03499 271 -RD-KDLILIDTA 281 (282)
T ss_pred -cC-CCEEEEeCC
Confidence 32 347777764
No 320
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.65 E-value=0.0088 Score=55.03 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=59.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC--CCHHHHHHHHHHHhcCCCCC----------CCcHHH
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT--FDQIRIAKAIIEGLGESASG----------LNEFQS 105 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~--~~~~~~~~~i~~~l~~~~~~----------~~~~~~ 105 (761)
..+++|.|+.|.|||||++.++.. .....+.+++..... .........+. .+. +.+. ...-+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~-q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL---LRPTSGRVRLDGADISQWDPNELGDHVG-YLP-QDDELFSGSIAENILSGGQR 102 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc---cCCCCCeEEECCEEcccCCHHHHHhheE-EEC-CCCccccCcHHHHCcCHHHH
Confidence 458999999999999999999962 223334444322111 11111111110 000 1100 111122
Q ss_pred HHHHHHHHhCCceEEEEEeCCCC-CCccCchhHHHhhcCC-CCCcEEEEEecchhhhh
Q 042791 106 LMSRIQSSIKGKKNFLVLDDVWD-GDYNKWQPFFRCLKNG-LHGSKILVTTRNESVAR 161 (761)
Q Consensus 106 ~~~~~~~~l~~~~~LlvlDd~~~-~~~~~~~~l~~~~~~~-~~~~~iiiTtr~~~~~~ 161 (761)
..-.+...+-.++-++++|+-.. -+......+...+... ..+..||++|.+.....
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 23334455556677999998733 1222233333333321 23556888888766553
No 321
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.65 E-value=0.00081 Score=56.30 Aligned_cols=101 Identities=19% Similarity=0.248 Sum_probs=46.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEE
Q 042791 41 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNF 120 (761)
Q Consensus 41 v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~L 120 (761)
|.|+|.+|+||||+|++++. .+...|..+ .+.....+.++... .+.......-... . -.--.-+
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~RI---q~tpdllPsDi~G~---~v~~~~~~~f~~~-------~-GPif~~i 65 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKRI---QFTPDLLPSDILGF---PVYDQETGEFEFR-------P-GPIFTNI 65 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEEE---E--TT--HHHHHEE---EEEETTTTEEEEE-------E--TT-SSE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeEE---EecCCCCcccceee---eeeccCCCeeEee-------c-Chhhhce
Confidence 78999999999999999998 666666543 33333444443211 0111100000000 0 0001228
Q ss_pred EEEeCCCCCCccCchhHHHhhcCCC----------CCcEEEEEecch
Q 042791 121 LVLDDVWDGDYNKWQPFFRCLKNGL----------HGSKILVTTRNE 157 (761)
Q Consensus 121 lvlDd~~~~~~~~~~~l~~~~~~~~----------~~~~iiiTtr~~ 157 (761)
+++|++.+........++....... +..-++|.|.++
T Consensus 66 ll~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 66 LLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp EEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-T
T ss_pred eeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCc
Confidence 8999997765555666666544321 122366777764
No 322
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.64 E-value=0.015 Score=56.55 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=36.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAI 89 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 89 (761)
+....+.|.|++|+|||++|.+++. .....-..++|++... +..++.+.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~--~~~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLW--NGLQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEEeeC--CHHHHHHHH
Confidence 4568999999999999999988775 2223456788888765 555555543
No 323
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.64 E-value=0.0039 Score=58.69 Aligned_cols=110 Identities=11% Similarity=0.198 Sum_probs=56.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCce
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKK 118 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (761)
+.+.|.|+.|+||||+++.+.. .+.......++. +.++... ........+..... ..+.....+.++..++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t-~e~~~E~--~~~~~~~~i~q~~v-g~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILT-IEDPIEF--VHESKRSLINQREV-GLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEE-EcCCccc--cccCccceeeeccc-CCCccCHHHHHHHHhcCCc
Confidence 4789999999999999998886 344333333332 2221110 00000000000000 0112234556777777777
Q ss_pred EEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchhh
Q 042791 119 NFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESV 159 (761)
Q Consensus 119 ~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~ 159 (761)
=++++|++.+ .+......... ..|..++.|+.....
T Consensus 76 d~ii~gEird--~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 76 DVILVGEMRD--LETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred CEEEEcCCCC--HHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 7999999943 23333333322 235557777665443
No 324
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.64 E-value=0.016 Score=61.09 Aligned_cols=89 Identities=24% Similarity=0.160 Sum_probs=51.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCC-HHHHHHHHHHHhcCCCC---CCCcHHHHHHHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFD-QIRIAKAIIEGLGESAS---GLNEFQSLMSRIQ 111 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~---~~~~~~~~~~~~~ 111 (761)
..+.+|.++|++|+||||+|.+++. .+...-..+..+++..... ..+.+..++.+++.... ...+.........
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 3578999999999999999999997 4544434566665543222 23344555555543221 1122233333232
Q ss_pred HHhCCceEEEEEeCCC
Q 042791 112 SSIKGKKNFLVLDDVW 127 (761)
Q Consensus 112 ~~l~~~~~LlvlDd~~ 127 (761)
+..... -++|+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 333333 578888773
No 325
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.64 E-value=0.018 Score=52.41 Aligned_cols=115 Identities=14% Similarity=0.087 Sum_probs=59.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCe---------eEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHH
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK---------VIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMS 108 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~---------~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 108 (761)
...++|.|+.|.|||||++.++.. .. ...+ +.|+.-........+.+.+... .......-+...-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv 100 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGL--WP-WGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRL 100 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC--CC-CCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHH
Confidence 458899999999999999999973 21 1122 2222211111111333333211 1112222333334
Q ss_pred HHHHHhCCceEEEEEeCCCC-CCccCchhHHHhhcCCCCCcEEEEEecchhhh
Q 042791 109 RIQSSIKGKKNFLVLDDVWD-GDYNKWQPFFRCLKNGLHGSKILVTTRNESVA 160 (761)
Q Consensus 109 ~~~~~l~~~~~LlvlDd~~~-~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~ 160 (761)
.+.+.+-.++-++++|+--. -+......+...+... +..+|++|.+....
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 45566666778899998632 1222233333444333 34577787776554
No 326
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.0078 Score=61.67 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=51.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhcc--CCeeEEEEecCC-CCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSNT-FDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSS 113 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~--f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 113 (761)
+.++++++|+.|+||||++.+++. ..... ...+.+++.... ....+-+...++.++.......+.......+.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~- 212 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE- 212 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-
Confidence 467999999999999999999997 33323 245666664332 233444555555555433222222233333332
Q ss_pred hCCceEEEEEeCCCC
Q 042791 114 IKGKKNFLVLDDVWD 128 (761)
Q Consensus 114 l~~~~~LlvlDd~~~ 128 (761)
+.+. -+++||....
T Consensus 213 l~~~-DlVLIDTaG~ 226 (374)
T PRK14722 213 LRNK-HMVLIDTIGM 226 (374)
T ss_pred hcCC-CEEEEcCCCC
Confidence 3333 4667998843
No 327
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.62 E-value=0.015 Score=53.67 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=26.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEE
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV 74 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v 74 (761)
..+++|.|.+|+||||+|++++. .....-..+.++
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~--~l~~~g~~v~~i 38 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAE--KLREAGYPVEVL 38 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEE
Confidence 46899999999999999999997 443322234455
No 328
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.62 E-value=0.0054 Score=60.10 Aligned_cols=56 Identities=27% Similarity=0.303 Sum_probs=39.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhh----ccCCeeEEEEecCCCCHHHHHHHHHHHh
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIWVCVSNTFDQIRIAKAIIEGL 93 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~----~~f~~~~~v~~~~~~~~~~~~~~i~~~l 93 (761)
...+.=|+|++|+|||.||.+++-...+. +.-..++|++....++.+.+. +|+++.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 35688999999999999997776421222 223569999999988888775 455544
No 329
>PRK14974 cell division protein FtsY; Provisional
Probab=96.62 E-value=0.017 Score=58.60 Aligned_cols=90 Identities=22% Similarity=0.176 Sum_probs=48.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCH--HHHHHHHHHHhcCCCC---CCCcHHH-HHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQ--IRIAKAIIEGLGESAS---GLNEFQS-LMSR 109 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~--~~~~~~i~~~l~~~~~---~~~~~~~-~~~~ 109 (761)
.++.++++.|++|+||||++.+++. .+...-..++++... .+.. ..-+...+..++.... ...+... ..+.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~~V~li~~D-t~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAY--YLKKNGFSVVIAAGD-TFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCeEEEecCC-cCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 3478999999999999999988886 444332244454432 2222 2334445555543221 1112222 2233
Q ss_pred HHHHhCCceEEEEEeCCCC
Q 042791 110 IQSSIKGKKNFLVLDDVWD 128 (761)
Q Consensus 110 ~~~~l~~~~~LlvlDd~~~ 128 (761)
+........-++++|....
T Consensus 215 i~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHhCCCCEEEEECCCc
Confidence 3322222223999998844
No 330
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.012 Score=60.83 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+.+++++.|++|+||||++.+++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 331
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.61 E-value=0.012 Score=53.82 Aligned_cols=114 Identities=16% Similarity=0.223 Sum_probs=58.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC---hhhhcc---C--CeeEEEEecCCCCHHHHHHHHHHHhcCCCC----C---CCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNN---DEVKRN---F--EKVIWVCVSNTFDQIRIAKAIIEGLGESAS----G---LNE 102 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~---~~~~~~---f--~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~----~---~~~ 102 (761)
..+++|.|+.|+|||||.+.+..+ ..+... | ..+.|+. + .+.+..++.... . ...
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCCH
Confidence 468899999999999999988632 011101 1 0122321 1 344555553211 1 111
Q ss_pred HHHHHHHHHHHhCCc--eEEEEEeCCCC-CCccCchhHHHhhcCC-CCCcEEEEEecchhhhh
Q 042791 103 FQSLMSRIQSSIKGK--KNFLVLDDVWD-GDYNKWQPFFRCLKNG-LHGSKILVTTRNESVAR 161 (761)
Q Consensus 103 ~~~~~~~~~~~l~~~--~~LlvlDd~~~-~~~~~~~~l~~~~~~~-~~~~~iiiTtr~~~~~~ 161 (761)
.+...-.+...+-.+ +-++++|+--. -+......+...+... ..|..||++|.+.....
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 222233344455455 67889998733 1222233333333321 13566888888866543
No 332
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.60 E-value=0.0098 Score=60.41 Aligned_cols=59 Identities=25% Similarity=0.241 Sum_probs=42.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhh----ccCCeeEEEEecCCCCHHHHHHHHHHHhcC
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIWVCVSNTFDQIRIAKAIIEGLGE 95 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~----~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 95 (761)
....++-|+|++|+|||+|+.+++-..... +.-..++|++....++++++.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 446788899999999999998886421221 1225789999999888888764 4555543
No 333
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.60 E-value=0.018 Score=55.58 Aligned_cols=49 Identities=20% Similarity=0.142 Sum_probs=33.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAI 89 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 89 (761)
....+.|.|++|+||||+|.+++. .....-..++|++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~--~~~~~g~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAY--GFLQNGYSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEEeCCC--CHHHHHHHH
Confidence 345899999999999999877765 2322335577777433 445555555
No 334
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.59 E-value=0.003 Score=62.94 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=46.0
Q ss_pred CCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 10 EGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 10 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+.|+|.++.++++.+.+...+...+.+.+++.+.||.|.||||+|+.+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999988776667889999999999999999999986
No 335
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.58 E-value=0.006 Score=54.37 Aligned_cols=21 Identities=48% Similarity=0.638 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
+|.|.|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999997
No 336
>PRK07667 uridine kinase; Provisional
Probab=96.57 E-value=0.0054 Score=57.49 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEe
Q 042791 20 KNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 76 (761)
Q Consensus 20 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~ 76 (761)
++.+.+.+... .+...+|+|.|.+|+||||+|+.+.. .+......+..++.
T Consensus 3 ~~~~~~~~~~~----~~~~~iIgI~G~~gsGKStla~~L~~--~l~~~~~~~~~i~~ 53 (193)
T PRK07667 3 TNELINIMKKH----KENRFILGIDGLSRSGKTTFVANLKE--NMKQEGIPFHIFHI 53 (193)
T ss_pred HHHHHHHHHhc----CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEEEc
Confidence 45666666544 34558999999999999999999997 44433323333433
No 337
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.55 E-value=0.02 Score=59.20 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...++|.|++|.|||||||.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 35789999999999999999986
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.55 E-value=0.013 Score=53.65 Aligned_cols=109 Identities=17% Similarity=0.056 Sum_probs=55.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGK 117 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 117 (761)
..+++|.|+.|+|||||++.++.- . ....+.+++.... .. ...........+...-.+...+-.+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl--~-~p~~G~i~~~g~~-i~-----------~~~q~~~LSgGq~qrv~laral~~~ 89 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ--L-IPNGDNDEWDGIT-PV-----------YKPQYIDLSGGELQRVAIAAALLRN 89 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC--C-CCCCcEEEECCEE-EE-----------EEcccCCCCHHHHHHHHHHHHHhcC
Confidence 458999999999999999999962 2 2223333321100 00 0000000122223333345556667
Q ss_pred eEEEEEeCCCC-CCccCchhHHHhhcCC--CCCcEEEEEecchhhhh
Q 042791 118 KNFLVLDDVWD-GDYNKWQPFFRCLKNG--LHGSKILVTTRNESVAR 161 (761)
Q Consensus 118 ~~LlvlDd~~~-~~~~~~~~l~~~~~~~--~~~~~iiiTtr~~~~~~ 161 (761)
+-++++|+--. -+......+...+... ..+..||++|.+.....
T Consensus 90 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 90 ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 78999998732 1122223333333321 11245777777755443
No 339
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.55 E-value=0.01 Score=54.75 Aligned_cols=85 Identities=26% Similarity=0.291 Sum_probs=44.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCC-CHHHHHHHHHHHhcCC---CCCCCcHHHHH-HHHHHHh
Q 042791 40 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF-DQIRIAKAIIEGLGES---ASGLNEFQSLM-SRIQSSI 114 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~---~~~~~~~~~~~-~~~~~~l 114 (761)
++.+.|++|+||||++..++. .....-..++.+.+.... ...+.+...+...+.. .....+..... +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~--~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL--YLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999987 444443345566554322 2222233333333211 11112333333 3333333
Q ss_pred CCceEEEEEeCC
Q 042791 115 KGKKNFLVLDDV 126 (761)
Q Consensus 115 ~~~~~LlvlDd~ 126 (761)
....-++|+|..
T Consensus 80 ~~~~d~viiDt~ 91 (173)
T cd03115 80 EENFDVVIVDTA 91 (173)
T ss_pred hCCCCEEEEECc
Confidence 444446668876
No 340
>PRK08233 hypothetical protein; Provisional
Probab=96.52 E-value=0.0076 Score=56.13 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+|+|.|.+|+||||+|++++.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999999997
No 341
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.52 E-value=0.068 Score=52.72 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcC----
Q 042791 20 KNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGE---- 95 (761)
Q Consensus 20 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~---- 95 (761)
-+.+.+.+... .-++...++|+.|+||+++|.++++. +-..-.. . ....+.....+
T Consensus 6 ~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~--llC~~~~----------~---~c~~~~~~~HPD~~~ 65 (290)
T PRK05917 6 WEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASL--ILKETSP----------E---AAYKISQKIHPDIHE 65 (290)
T ss_pred HHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHH--HhCCCCc----------c---HHHHHhcCCCCCEEE
Confidence 34556666533 23678889999999999999999872 2111000 0 00011111000
Q ss_pred ---CCC-CCCcHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc-hhhhhh-cC
Q 042791 96 ---SAS-GLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVARM-MG 164 (761)
Q Consensus 96 ---~~~-~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~-~~~~~~-~~ 164 (761)
... .....+++ +.+.+.+ .+..-++|+|+++....+....++..+..-..++.+|++|.. ..+.+. ..
T Consensus 66 i~p~~~~~~I~idqi-R~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~S 144 (290)
T PRK05917 66 FSPQGKGRLHSIETP-RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRS 144 (290)
T ss_pred EecCCCCCcCcHHHH-HHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHh
Confidence 000 01122332 2233322 355568999999888888889999988886667766666555 555544 23
Q ss_pred CCCeeecCCC
Q 042791 165 STDSISIKQL 174 (761)
Q Consensus 165 ~~~~~~l~~l 174 (761)
....+.+.++
T Consensus 145 Rcq~~~~~~~ 154 (290)
T PRK05917 145 RSLSIHIPME 154 (290)
T ss_pred cceEEEccch
Confidence 3556666654
No 342
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.52 E-value=0.0035 Score=56.85 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=43.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCC---CCCCcHHHHHHHHHHHhCCc
Q 042791 41 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESA---SGLNEFQSLMSRIQSSIKGK 117 (761)
Q Consensus 41 v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~~~l~~~ 117 (761)
++|.|.+|+|||++|.+++. . ....++|+.-....+. +..+.|.+.-.... ........+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~--~---~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAA--E---LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHH--h---cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 67999999999999999886 2 2245777766655533 34444433222221 1111222233333211 2 2
Q ss_pred eEEEEEeCC
Q 042791 118 KNFLVLDDV 126 (761)
Q Consensus 118 ~~LlvlDd~ 126 (761)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999987
No 343
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.51 E-value=0.015 Score=60.21 Aligned_cols=82 Identities=23% Similarity=0.331 Sum_probs=49.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCC-----CCcHHHHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASG-----LNEFQSLMSRIQ 111 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~ 111 (761)
...++.|.|++|+||||++.+++. ........++|+.... +...+. .-+++++..... ....+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~--~~a~~g~~VlYvs~EE--s~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLYVSGEE--SPEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCc--CHHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 457899999999999999999987 3444445688887654 233332 223344432211 123344433332
Q ss_pred HHhCCceEEEEEeCC
Q 042791 112 SSIKGKKNFLVLDDV 126 (761)
Q Consensus 112 ~~l~~~~~LlvlDd~ 126 (761)
..+.-++|+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235568888987
No 344
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.018 Score=55.00 Aligned_cols=119 Identities=16% Similarity=0.200 Sum_probs=65.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChh-hhc----------cC---CeeEEEEecC------CCCH---------------
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDE-VKR----------NF---EKVIWVCVSN------TFDQ--------------- 82 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~-~~~----------~f---~~~~~v~~~~------~~~~--------------- 82 (761)
...++|.||-|.|||||++.+..-.. .++ .. ..+.||+=.. +.++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 36899999999999999999997210 000 01 2355654100 0011
Q ss_pred -------HHHHHHHHHHhcCCC---CC---CCcHHHHHHHHHHHhCCceEEEEEeCC----CCCCccCchhHHHhhcCCC
Q 042791 83 -------IRIAKAIIEGLGESA---SG---LNEFQSLMSRIQSSIKGKKNFLVLDDV----WDGDYNKWQPFFRCLKNGL 145 (761)
Q Consensus 83 -------~~~~~~i~~~l~~~~---~~---~~~~~~~~~~~~~~l~~~~~LlvlDd~----~~~~~~~~~~l~~~~~~~~ 145 (761)
++...+.+++++... .. ...-+...-.+.++|-.++=|+++|+- |......+-.++..+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 234445555554422 11 112223333456778888899999975 222222223333333333
Q ss_pred CCcEEEEEecchh
Q 042791 146 HGSKILVTTRNES 158 (761)
Q Consensus 146 ~~~~iiiTtr~~~ 158 (761)
|.-|+++|.+-.
T Consensus 189 -g~tIl~vtHDL~ 200 (254)
T COG1121 189 -GKTVLMVTHDLG 200 (254)
T ss_pred -CCEEEEEeCCcH
Confidence 777999998844
No 345
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.50 E-value=0.0022 Score=63.33 Aligned_cols=79 Identities=27% Similarity=0.246 Sum_probs=41.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGK 117 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 117 (761)
.+.|.++|++|+|||++++..... ....--.+..+..+...+...++..+-..+....... -.--.++
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~--l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~----------~gP~~~k 100 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSS--LDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRV----------YGPPGGK 100 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHC--STTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEE----------EEEESSS
T ss_pred CCcEEEECCCCCchhHHHHhhhcc--CCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCC----------CCCCCCc
Confidence 367899999999999999888762 2221112334555554444433322211111100000 0001368
Q ss_pred eEEEEEeCCCC
Q 042791 118 KNFLVLDDVWD 128 (761)
Q Consensus 118 ~~LlvlDd~~~ 128 (761)
+.++++||+.-
T Consensus 101 ~lv~fiDDlN~ 111 (272)
T PF12775_consen 101 KLVLFIDDLNM 111 (272)
T ss_dssp EEEEEEETTT-
T ss_pred EEEEEecccCC
Confidence 89999999944
No 346
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.48 E-value=0.0061 Score=66.68 Aligned_cols=155 Identities=11% Similarity=0.114 Sum_probs=84.6
Q ss_pred CCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHH
Q 042791 8 IDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAK 87 (761)
Q Consensus 8 ~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (761)
..-++++|....+.++.+.+...+. ....|.|+|..|+||+.+|+++.. ...+.-...+.++|.... .+.+.
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~--~s~r~~~pfv~inca~~~--~~~~e 272 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHL--RSPRGKKPFLALNCASIP--DDVVE 272 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHH--hCCCCCCCeEEeccccCC--HHHHH
Confidence 3455799999888888877654332 234588999999999999999875 222232334566666543 22221
Q ss_pred HHHHHhcCCCCCC-CcH-HHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCC-----------CCcEEEEEe
Q 042791 88 AIIEGLGESASGL-NEF-QSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTT 154 (761)
Q Consensus 88 ~i~~~l~~~~~~~-~~~-~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~~~~iiiTt 154 (761)
. .+.+..+.. ... ......+. ....=.++||+++.-.......+...+.... ...|||.||
T Consensus 273 ~---elFG~~~~~~~~~~~~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st 346 (520)
T PRK10820 273 S---ELFGHAPGAYPNALEGKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 346 (520)
T ss_pred H---HhcCCCCCCcCCcccCCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEec
Confidence 1 222111100 000 00000011 1123347899998766666677777665421 124788876
Q ss_pred cch--hhh----------hhcCCCCeeecCCCChH
Q 042791 155 RNE--SVA----------RMMGSTDSISIKQLAEE 177 (761)
Q Consensus 155 r~~--~~~----------~~~~~~~~~~l~~l~~~ 177 (761)
... ... ..+ ....+++++|.+.
T Consensus 347 ~~~l~~l~~~g~f~~dL~~rL-~~~~i~lPpLreR 380 (520)
T PRK10820 347 QKNLVELVQKGEFREDLYYRL-NVLTLNLPPLRDR 380 (520)
T ss_pred CCCHHHHHHcCCccHHHHhhc-CeeEEeCCCcccC
Confidence 542 111 111 1356888888753
No 347
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.47 E-value=0.0041 Score=53.82 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=24.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhcc-CC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRN-FE 69 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f~ 69 (761)
...++|.|++|+||||++.++++ .++.. |.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e--~L~~~g~k 35 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE--KLREKGYK 35 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH--HHHhcCce
Confidence 45789999999999999999997 44433 53
No 348
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.46 E-value=0.019 Score=59.84 Aligned_cols=49 Identities=29% Similarity=0.274 Sum_probs=34.3
Q ss_pred ceecccchHHHHHHHHh-------c--CCcc-C--CCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 12 EVCGRVDEKNELLSKLL-------C--ESSE-Q--QNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~-------~--~~~~-~--~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..||.++..+.+...+. . .... . ......+.+.|++|+|||++|+.++.
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 36899988888876551 1 0000 0 01135789999999999999999996
No 349
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.46 E-value=0.0024 Score=57.47 Aligned_cols=85 Identities=24% Similarity=0.205 Sum_probs=44.3
Q ss_pred hccCCcceEEeeccccccCCccccccccccccchh-cccccCccccCCcCCccCc--hhhhccCCCcEEecCCccCccc-
Q 042791 423 FSKLACLRALVISQFYISGSHHEANRIKEIPENVG-KLIHLKYLNLSELGIERLP--ETLCELYNLQKLDIRRCRNLRE- 498 (761)
Q Consensus 423 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~-~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~- 498 (761)
|..++.|.+|.+.+|.++. +...+. -+++|+.|.+.+|+|.++- .-+..|++|++|.+-+|.....
T Consensus 60 lp~l~rL~tLll~nNrIt~----------I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~ 129 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITR----------IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKK 129 (233)
T ss_pred CCCccccceEEecCCccee----------eccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhccc
Confidence 4455666666666444432 222222 2345666666666655442 2345566666666666552211
Q ss_pred --ccccccccccccEeecCCc
Q 042791 499 --LPAGIGKLMNMRTLLNGET 517 (761)
Q Consensus 499 --lp~~~~~l~~L~~L~l~~~ 517 (761)
-...+..+++|+.||..+-
T Consensus 130 ~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 130 NYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CceeEEEEecCcceEeehhhh
Confidence 0123566777777776554
No 350
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.0068 Score=53.36 Aligned_cols=31 Identities=29% Similarity=0.293 Sum_probs=25.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF 68 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f 68 (761)
.++.+|.+.|.+|.||||+|.++.+ ++....
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~--~L~~~G 51 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEE--KLFAKG 51 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHH--HHHHcC
Confidence 3467999999999999999999998 555444
No 351
>PRK05973 replicative DNA helicase; Provisional
Probab=96.45 E-value=0.019 Score=54.99 Aligned_cols=49 Identities=16% Similarity=0.118 Sum_probs=34.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAI 89 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 89 (761)
+...++|.|.+|+|||+++.+++. .....-..++|++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~--~~a~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAV--EAMKSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEEEeCC--HHHHHHHH
Confidence 456889999999999999998886 33334456778876653 44444444
No 352
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.45 E-value=0.0083 Score=53.24 Aligned_cols=21 Identities=43% Similarity=0.515 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
+|.+.|++|+||||+|+.++.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999985
No 353
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.44 E-value=0.018 Score=58.33 Aligned_cols=57 Identities=21% Similarity=0.202 Sum_probs=38.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhc----cCCeeEEEEecCCCCHHHHHHHHHHHh
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSNTFDQIRIAKAIIEGL 93 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l 93 (761)
....++.|+|++|+|||+++..++....... .-..++|++....++.+.+. .+++.+
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~-~ia~~~ 154 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLL-AIAERY 154 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHH-HHHHHc
Confidence 3468999999999999999988874211111 11357999988877777643 344443
No 354
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.034 Score=56.45 Aligned_cols=91 Identities=16% Similarity=0.141 Sum_probs=54.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCC-HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFD-QIRIAKAIIEGLGESASGLNEFQSLMSRIQSSI 114 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 114 (761)
.+.+++.+.|+.|+||||++..++. .....-..+.++++..... ..+-++..++.++.......+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~--~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGW--QLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 3478999999999999999999886 3433334577777654433 223344444444433222334455545444332
Q ss_pred C-CceEEEEEeCCCC
Q 042791 115 K-GKKNFLVLDDVWD 128 (761)
Q Consensus 115 ~-~~~~LlvlDd~~~ 128 (761)
. +..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3446889998743
No 355
>PRK05439 pantothenate kinase; Provisional
Probab=96.43 E-value=0.028 Score=56.13 Aligned_cols=81 Identities=19% Similarity=0.168 Sum_probs=44.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc--CCeeEEEEecCCCCHHHHHHHHHHHhc-CCCCCCCcHHHHHHHHH
Q 042791 35 QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSNTFDQIRIAKAIIEGLG-ESASGLNEFQSLMSRIQ 111 (761)
Q Consensus 35 ~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~--f~~~~~v~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~~~ 111 (761)
...+.+|+|.|.+|+||||+|+.+.. .+... ...+.-++..+..-..+.+..- ..+. ...+..-+.+.+.+.+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHH
Confidence 45688999999999999999999886 44332 2334455544433222222110 0111 11233345555555555
Q ss_pred HHhCCce
Q 042791 112 SSIKGKK 118 (761)
Q Consensus 112 ~~l~~~~ 118 (761)
....++.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 5544443
No 356
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.42 E-value=0.014 Score=59.33 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=41.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhh---h-ccCCeeEEEEecCCCCHHHHHHHHHHHhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEV---K-RNFEKVIWVCVSNTFDQIRIAKAIIEGLG 94 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~---~-~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (761)
....++.|+|++|+|||+++..++..... . +.-..++|++....++.+++. ++++.++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 34678889999999999999877742111 1 112369999999988888764 4455554
No 357
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.0084 Score=55.16 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=60.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhc--CCC----CC--------CCcH
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLG--ESA----SG--------LNEF 103 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~--~~~----~~--------~~~~ 103 (761)
...++|.|+.|.|||||++.++.. .....+.+++......... ......++ .+. .. ...-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGL---LKPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 468999999999999999999973 1223344443221110000 01111111 000 00 1111
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCC-CCccCchhHHHhhcCC-CCCcEEEEEecchhhhh
Q 042791 104 QSLMSRIQSSIKGKKNFLVLDDVWD-GDYNKWQPFFRCLKNG-LHGSKILVTTRNESVAR 161 (761)
Q Consensus 104 ~~~~~~~~~~l~~~~~LlvlDd~~~-~~~~~~~~l~~~~~~~-~~~~~iiiTtr~~~~~~ 161 (761)
+...-.+...+-.++-++++|+-.. -+......+...+... ..|..+|++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2223335566667788999998733 1222233344444332 22566888888866544
No 358
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0085 Score=60.30 Aligned_cols=96 Identities=23% Similarity=0.269 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCC
Q 042791 20 KNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASG 99 (761)
Q Consensus 20 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~ 99 (761)
..++.+.|...- -...++.|-|.||||||||.-+++. ++.... .++||+.... ...+ +--+++++.....
T Consensus 79 ~~EldRVLGGG~----V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~ 148 (456)
T COG1066 79 IEELDRVLGGGL----VPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEES--LQQI-KLRADRLGLPTNN 148 (456)
T ss_pred hHHHHhhhcCCc----ccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccc
Confidence 344555554321 2346889999999999999999998 555444 7999976653 2222 2234455533222
Q ss_pred -----CCcHHHHHHHHHHHhCCceEEEEEeCCCC
Q 042791 100 -----LNEFQSLMSRIQSSIKGKKNFLVLDDVWD 128 (761)
Q Consensus 100 -----~~~~~~~~~~~~~~l~~~~~LlvlDd~~~ 128 (761)
....+.+.+.+.+ .++-++|+|-++.
T Consensus 149 l~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQT 179 (456)
T COG1066 149 LYLLAETNLEDIIAELEQ---EKPDLVVIDSIQT 179 (456)
T ss_pred eEEehhcCHHHHHHHHHh---cCCCEEEEeccce
Confidence 2233443333333 4677999999844
No 359
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.39 E-value=0.0089 Score=56.28 Aligned_cols=119 Identities=16% Similarity=0.195 Sum_probs=59.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHh
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLN---EFQSLMSRIQSSI 114 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~~~~l 114 (761)
.++++|.|+.|.||||+.+.++....+ .+. -.++++.. .. -.+.+.+...++..+.... ....-...+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~l-a~~--G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIM-AQI--GCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-HHc--CCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 478999999999999999988753111 111 11222211 01 1223333333333221111 1111111222222
Q ss_pred --CCceEEEEEeCCCCCC-ccC----chhHHHhhcCCCCCcEEEEEecchhhhhhc
Q 042791 115 --KGKKNFLVLDDVWDGD-YNK----WQPFFRCLKNGLHGSKILVTTRNESVARMM 163 (761)
Q Consensus 115 --~~~~~LlvlDd~~~~~-~~~----~~~l~~~~~~~~~~~~iiiTtr~~~~~~~~ 163 (761)
-.++-|+++|+..... ... ...+...+.. .+..+|++|.+.++...+
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAIL 157 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHh
Confidence 2467799999984421 111 1122223322 267899999998776654
No 360
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.38 E-value=0.046 Score=53.73 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=65.0
Q ss_pred hHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCC---CHHHHHHHHHHHhcC
Q 042791 19 EKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF---DQIRIAKAIIEGLGE 95 (761)
Q Consensus 19 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~---~~~~~~~~i~~~l~~ 95 (761)
..+.++..+.. ....+.++|.|+.|.||||+.+.++. ... ...+.+++....-. ...++...+ ..+..
T Consensus 97 ~~~~~l~~l~~-----~~~~~~~~i~g~~g~GKttl~~~l~~--~~~-~~~G~i~~~g~~v~~~d~~~ei~~~~-~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVR-----NNRVLNTLIISPPQCGKTTLLRDLAR--ILS-TGISQLGLRGKKVGIVDERSEIAGCV-NGVPQ 167 (270)
T ss_pred cHHHHHHHHHh-----CCCeeEEEEEcCCCCCHHHHHHHHhC--ccC-CCCceEEECCEEeecchhHHHHHHHh-ccccc
Confidence 34444555542 22357899999999999999999997 332 33334443211111 122222111 01100
Q ss_pred CC----CCCCcHHHHHHHHHHHhC-CceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchhhh
Q 042791 96 SA----SGLNEFQSLMSRIQSSIK-GKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVA 160 (761)
Q Consensus 96 ~~----~~~~~~~~~~~~~~~~l~-~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~ 160 (761)
.. .+..+.......+...+. ..+-++++|++. ....+..+...+. .|..+|+||.+..+.
T Consensus 168 ~~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 168 HDVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred ccccccccccccchHHHHHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 00 000011111222333333 467799999983 3344444544443 367799999876553
No 361
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.37 E-value=0.019 Score=56.86 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 35 QNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 35 ~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...+.+|+|.|+.|+||||+|+.+..
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999988875
No 362
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.36 E-value=0.0077 Score=61.81 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=37.1
Q ss_pred CceecccchHHHHHHHHhcC-------Cc-cCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 11 GEVCGRVDEKNELLSKLLCE-------SS-EQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~-------~~-~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+||.++..+.+...+... +. .....++.|.++|++|+|||++|++++.
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 45899999988887665531 00 0012357889999999999999999998
No 363
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.36 E-value=0.014 Score=54.83 Aligned_cols=80 Identities=19% Similarity=0.266 Sum_probs=44.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhcc-CC---eeEEEEecCCCCHHHHHHHHHHH---hcCCCCCCCcHHHHHHHHHH
Q 042791 40 VISLVGLGGIGKTTLAQLAYNNDEVKRN-FE---KVIWVCVSNTFDQIRIAKAIIEG---LGESASGLNEFQSLMSRIQS 112 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~~~~~~~~-f~---~~~~v~~~~~~~~~~~~~~i~~~---l~~~~~~~~~~~~~~~~~~~ 112 (761)
+|+|.|++|+||||+|+++.. .+... .. .+..+..............-... .....+...+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 689999999999999999997 45432 22 23444333322222222221111 11122344566777777766
Q ss_pred HhCCceEEE
Q 042791 113 SIKGKKNFL 121 (761)
Q Consensus 113 ~l~~~~~Ll 121 (761)
...++.+-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 655565444
No 364
>PRK10867 signal recognition particle protein; Provisional
Probab=96.35 E-value=0.016 Score=60.82 Aligned_cols=41 Identities=37% Similarity=0.403 Sum_probs=29.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-CCeeEEEEecC
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSN 78 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f~~~~~v~~~~ 78 (761)
..+.++.++|++|+||||.+.+++. ..... -..+..+++..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~--~l~~~~G~kV~lV~~D~ 139 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK--YLKKKKKKKVLLVAADV 139 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH--HHHHhcCCcEEEEEccc
Confidence 3478999999999999999988886 44444 33455565543
No 365
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.35 E-value=0.024 Score=56.09 Aligned_cols=90 Identities=21% Similarity=0.221 Sum_probs=49.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCH-HHHHHHHHHHhcCCC---CCCCcH-HHHHHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQ-IRIAKAIIEGLGESA---SGLNEF-QSLMSRI 110 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~-~~~~~~i~~~l~~~~---~~~~~~-~~~~~~~ 110 (761)
.+++++.+.|++|+||||++..++. .....-..+..+++...... ..-+...++..+... ....+. ......+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 4568999999999999999998886 44444345666665432221 222333444443221 111122 2223334
Q ss_pred HHHhCCceEEEEEeCCC
Q 042791 111 QSSIKGKKNFLVLDDVW 127 (761)
Q Consensus 111 ~~~l~~~~~LlvlDd~~ 127 (761)
........-++|+|-.-
T Consensus 148 ~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHCCCCEEEEeCCC
Confidence 43333444588899773
No 366
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.087 Score=56.86 Aligned_cols=179 Identities=20% Similarity=0.169 Sum_probs=93.8
Q ss_pred CCceecccchHHHHHHHHhcCCccC-------CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCH
Q 042791 10 EGEVCGRVDEKNELLSKLLCESSEQ-------QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQ 82 (761)
Q Consensus 10 ~~~~vgr~~~~~~l~~~l~~~~~~~-------~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~ 82 (761)
-++.=|..+..+.+.+.+.-+...+ -.-+.-|.++|++|.|||-||.+++.. . ..-|+.+-.+
T Consensus 666 w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~--~-----~~~fisvKGP--- 735 (952)
T KOG0735|consen 666 WEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASN--S-----NLRFISVKGP--- 735 (952)
T ss_pred ceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhh--C-----CeeEEEecCH---
Confidence 3445556666666666655443110 122345789999999999999999973 2 1234554442
Q ss_pred HHHHHHHHH-HhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCC-------CCccC----chhHHHhhcCC--CCCc
Q 042791 83 IRIAKAIIE-GLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWD-------GDYNK----WQPFFRCLKNG--LHGS 148 (761)
Q Consensus 83 ~~~~~~i~~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~-------~~~~~----~~~l~~~~~~~--~~~~ 148 (761)
+++. .++.++ +.......++-..+++++++|++|. ++... ..+++..+... -.|.
T Consensus 736 -----ElL~KyIGaSE------q~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV 804 (952)
T KOG0735|consen 736 -----ELLSKYIGASE------QNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGV 804 (952)
T ss_pred -----HHHHHHhcccH------HHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceE
Confidence 2222 233221 2222222333346899999999965 22222 23344444331 2344
Q ss_pred EEE-EEecch----hhhhhcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 149 KIL-VTTRNE----SVARMMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 149 ~ii-iTtr~~----~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
-|+ .|||.+ .+.+.-..+..+.-..-++.|..+++...+....- ......+.++....|.-
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-----~~~vdl~~~a~~T~g~t 870 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-----DTDVDLECLAQKTDGFT 870 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-----ccccchHHHhhhcCCCc
Confidence 444 455643 23222122445555666788888888876532111 11122466777777665
No 367
>PTZ00035 Rad51 protein; Provisional
Probab=96.34 E-value=0.025 Score=57.81 Aligned_cols=58 Identities=26% Similarity=0.291 Sum_probs=39.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhh----ccCCeeEEEEecCCCCHHHHHHHHHHHhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIWVCVSNTFDQIRIAKAIIEGLG 94 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~----~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (761)
....++.|+|++|+|||+++..++-...+. +.-..++|++....++.+.+. .+++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~-~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIV-QIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHH-HHHHHhC
Confidence 456789999999999999998887421211 122457799988777776643 3444443
No 368
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.32 E-value=0.034 Score=62.43 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...|+|+|..|+|||||++.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999986
No 369
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.32 E-value=0.13 Score=51.01 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=49.1
Q ss_pred CceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc-hhhhhhc-CCCCeeecCCCChHHHHHHHHH
Q 042791 116 GKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVARMM-GSTDSISIKQLAEEECWSLFKQ 185 (761)
Q Consensus 116 ~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~ 185 (761)
+.+-++|||+++.......+.++..+..-..++.+|++|.+ ..+.+.+ .....+.+.+ ++++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 55679999999988888889999998886666666666655 4555543 3356777766 66666666654
No 370
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.31 E-value=0.0018 Score=60.76 Aligned_cols=45 Identities=20% Similarity=0.058 Sum_probs=35.2
Q ss_pred ccccccccccEeecCCcccccccccc----CCCCCCCcccCceeecCcc
Q 042791 501 AGIGKLMNMRTLLNGETYALKYMPIG----ISKLTNLRTLDRFVVGGGV 545 (761)
Q Consensus 501 ~~~~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~l~~~~~~~ 545 (761)
..+-+|+.|+..+|+.|.+....|+. +++-+.|.+|.+++|+...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 34678999999999999877766655 5677889999988887443
No 371
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.30 E-value=0.013 Score=66.55 Aligned_cols=119 Identities=18% Similarity=0.099 Sum_probs=68.4
Q ss_pred CCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHH
Q 042791 10 EGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAI 89 (761)
Q Consensus 10 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 89 (761)
-+.++|....+.++.+.+..... ....|.|+|++|+||+++|+++.+ .....-...+.++|.... .+.+...+
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~--~s~r~~~pfv~vnc~~~~-~~~~~~el 396 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHN--ESERAAGPYIAVNCQLYP-DEALAEEF 396 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHH--hCCccCCCeEEEECCCCC-hHHHHHHh
Confidence 45689999888888877765542 234588999999999999999987 222222334455555532 22222222
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcC
Q 042791 90 IEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKN 143 (761)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 143 (761)
+......... .....+. ....-.|+||+++.-....+..++..+..
T Consensus 397 fg~~~~~~~~-----~~~g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~ 442 (638)
T PRK11388 397 LGSDRTDSEN-----GRLSKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKT 442 (638)
T ss_pred cCCCCcCccC-----CCCCcee---ECCCCEEEEcChhhCCHHHHHHHHHHHhc
Confidence 2111000000 0000000 12234689999987766677777776654
No 372
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.29 E-value=0.02 Score=54.00 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...|.|.|++|+|||||.+.++.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999996
No 373
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.052 Score=49.18 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=64.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC---CC--CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 042791 40 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN---TF--DQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSI 114 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~---~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 114 (761)
.|.+.|.||+||||+|+.+++ .++..-..++-+.... .. ....+.++.++.... +.....+-.++
T Consensus 3 LiIlTGyPgsGKTtfakeLak--~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~--------ks~~rlldSal 72 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAK--ELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFL--------KSVERLLDSAL 72 (261)
T ss_pred eEEEecCCCCCchHHHHHHHH--HHHHhhhhccccchhhhhheecccccchHHHHHHHHHH--------HHHHHHHHHHh
Confidence 578999999999999999998 5554443333222100 00 000111111111110 11222233344
Q ss_pred CCceEEEEEeCCCCCCccCchhHHHhhc----CCCCCcEEEEEecchhhhhhcCCCCeeecCCCChHHHHHHHHHHh
Q 042791 115 KGKKNFLVLDDVWDGDYNKWQPFFRCLK----NGLHGSKILVTTRNESVARMMGSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 115 ~~~~~LlvlDd~~~~~~~~~~~l~~~~~----~~~~~~~iiiTtr~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
+.+++|.||.-- +..+...+. .......||-+.-..+.+.... .-.-+|..++-..+++.+.-
T Consensus 73 --kn~~VIvDdtNY-----yksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN---~ergepip~Evl~qly~RfE 139 (261)
T COG4088 73 --KNYLVIVDDTNY-----YKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRN---RERGEPIPEEVLRQLYDRFE 139 (261)
T ss_pred --cceEEEEecccH-----HHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhh---ccCCCCCCHHHHHHHHHhhc
Confidence 388999999721 222222211 1222334666555555443322 33456777777778877753
No 374
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.29 E-value=0.0081 Score=65.12 Aligned_cols=132 Identities=13% Similarity=0.098 Sum_probs=74.0
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAII 90 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 90 (761)
++++|....++++.+.+..-.. ....|.|.|++|+||+.+|+.+.+. ..+.-...+.++|.... +..+ -
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~--S~r~~~pfv~inC~~l~--e~ll---e 280 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQL--SGRRDFPFVAINCGAIA--ESLL---E 280 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHh--cCcCCCCEEEeccccCC--hhHH---H
Confidence 4589999999988888765432 2357889999999999999999962 22222334445555432 2222 1
Q ss_pred HHhcCCCCCC-CcHH--HHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCC-----------CCcEEEEEecc
Q 042791 91 EGLGESASGL-NEFQ--SLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTRN 156 (761)
Q Consensus 91 ~~l~~~~~~~-~~~~--~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~~~~iiiTtr~ 156 (761)
..+.+..... .... .....+ + ....=-|+||+++.-....+..+...+.... ...|||.||..
T Consensus 281 seLFG~~~gaftga~~~~~~Gl~-e--~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 281 AELFGYEEGAFTGARRGGRTGLI-E--AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred HHhcCCcccccccccccccccch-h--hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 2232211100 0000 000000 0 1123358999998766666777777665421 12378877653
No 375
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.28 E-value=0.013 Score=57.63 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=31.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
+...++.|.|++|+|||++|.+++. .....-..++|++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~--~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAV--TQASRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHH--HHHhCCCcEEEEEecC
Confidence 4567899999999999999998876 3333445788888864
No 376
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.017 Score=53.38 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=34.8
Q ss_pred HHHHHHHhCCceEEEEEeCCCCC-CccCchhHHHhhcC-CCCCcEEEEEecchhhhhhcCCCC
Q 042791 107 MSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKN-GLHGSKILVTTRNESVARMMGSTD 167 (761)
Q Consensus 107 ~~~~~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~~~~-~~~~~~iiiTtr~~~~~~~~~~~~ 167 (761)
...+.+.+--++-+.|+|+.|+. +.+.+..+...+.. ..++.-+++.|..+.++.....+.
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCE
Confidence 33444444456779999999763 22333333333332 223555777788888877654443
No 377
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.26 E-value=0.011 Score=51.35 Aligned_cols=44 Identities=32% Similarity=0.365 Sum_probs=32.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCC
Q 042791 40 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGES 96 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~ 96 (761)
+|.|.|++|+||||+|+.+++ ...-. ++ +.-.+++++++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe--~~gl~-----~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAE--HLGLK-----LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHH--HhCCc-----ee------eccHHHHHHHHHcCCC
Confidence 578999999999999999997 22211 12 3345778888877754
No 378
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.013 Score=54.14 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|.|||||++.++.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999996
No 379
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.25 E-value=0.02 Score=54.76 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhc--cCCeeEEEEecCC
Q 042791 40 VISLVGLGGIGKTTLAQLAYNNDEVKR--NFEKVIWVCVSNT 79 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~~~~~~~--~f~~~~~v~~~~~ 79 (761)
+|+|.|++|+||||+|+.+.. .+.. .-..+..++....
T Consensus 1 IigI~G~sGSGKTTla~~L~~--~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA--LLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH--HHhhcCCCCcEEEEecCcc
Confidence 478999999999999999997 4432 1123445554443
No 380
>PRK13695 putative NTPase; Provisional
Probab=96.23 E-value=0.01 Score=54.66 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.++|.|++|+||||+++.++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999887
No 381
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.21 E-value=0.0057 Score=62.84 Aligned_cols=106 Identities=17% Similarity=0.188 Sum_probs=57.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhC
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIK 115 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 115 (761)
..++=+.|||..|.|||.|+-.+++....+.. . ......++.++-+.+.......... ..+.+.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k--~--------R~HFh~Fm~~vh~~l~~~~~~~~~l----~~va~~l~ 125 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK--R--------RVHFHEFMLDVHSRLHQLRGQDDPL----PQVADELA 125 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccc--c--------cccccHHHHHHHHHHHHHhCCCccH----HHHHHHHH
Confidence 45788999999999999999999984222111 1 1122344444444443322222222 23344455
Q ss_pred CceEEEEEeCCCCCCccCchhHHHhhcC-CCCCcEEEEEec
Q 042791 116 GKKNFLVLDDVWDGDYNKWQPFFRCLKN-GLHGSKILVTTR 155 (761)
Q Consensus 116 ~~~~LlvlDd~~~~~~~~~~~l~~~~~~-~~~~~~iiiTtr 155 (761)
++..||.+|++.-.+..+.-.+...+.. ...|..+|.||-
T Consensus 126 ~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN 166 (362)
T PF03969_consen 126 KESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSN 166 (362)
T ss_pred hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCC
Confidence 6667999999855444333333333332 344664555544
No 382
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.014 Score=52.78 Aligned_cols=117 Identities=17% Similarity=0.210 Sum_probs=61.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCC--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFD--QIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIK 115 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 115 (761)
..+++|.|+.|.|||||++.++.. . ....+.+++....... .... ...++-. ++...-+...-.+...+-
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~-~qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKLPLEEL----RRRIGYV-PQLSGGQRQRVALARALL 96 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccCCHHHH----HhceEEE-eeCCHHHHHHHHHHHHHh
Confidence 368899999999999999999973 2 2344555554322111 1111 1111110 001122223333455555
Q ss_pred CceEEEEEeCCCC-CCccCchhHHHhhcCC-CCCcEEEEEecchhhhhh
Q 042791 116 GKKNFLVLDDVWD-GDYNKWQPFFRCLKNG-LHGSKILVTTRNESVARM 162 (761)
Q Consensus 116 ~~~~LlvlDd~~~-~~~~~~~~l~~~~~~~-~~~~~iiiTtr~~~~~~~ 162 (761)
..+-++++|+... -+......+...+... ..+..+|++|.+......
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6678999999843 1222233333333321 124568888887655443
No 383
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.18 E-value=0.014 Score=55.13 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=27.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEE
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV 74 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v 74 (761)
.++.+++|.|.+|+||||+|+.+.. .+...-.+++++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~--~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE--ALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhCCCCEEEE
Confidence 4568999999999999999999997 443332334455
No 384
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.18 E-value=0.003 Score=52.62 Aligned_cols=21 Identities=43% Similarity=0.543 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 042791 41 ISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 41 v~i~G~~GiGKTtla~~~~~~ 61 (761)
|.|+|++|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999873
No 385
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.18 E-value=0.071 Score=50.76 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|.|||||++.++.
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 386
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.16 E-value=0.042 Score=58.67 Aligned_cols=82 Identities=23% Similarity=0.333 Sum_probs=47.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESAS-----GLNEFQSLMSRIQ 111 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~ 111 (761)
...++.|.|++|+||||++.+++. .....-..++|++... +...+... ++.++.... ...+.+.+.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~--~~a~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAA--RLAAAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 456899999999999999999987 3433345688887654 33333222 344432111 1123333333332
Q ss_pred HHhCCceEEEEEeCC
Q 042791 112 SSIKGKKNFLVLDDV 126 (761)
Q Consensus 112 ~~l~~~~~LlvlDd~ 126 (761)
+ .+.-++|+|.+
T Consensus 154 ~---~~~~lVVIDSI 165 (446)
T PRK11823 154 E---EKPDLVVIDSI 165 (446)
T ss_pred h---hCCCEEEEech
Confidence 2 24457788876
No 387
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.16 E-value=0.0035 Score=54.51 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 042791 41 ISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 41 v~i~G~~GiGKTtla~~~~~ 60 (761)
|+|.|.+|+||||+|+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999997
No 388
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.062 Score=48.13 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..++.|.|+-|+|||||.|.++-
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHc
Confidence 35889999999999999999996
No 389
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.16 E-value=0.0036 Score=56.36 Aligned_cols=81 Identities=19% Similarity=0.123 Sum_probs=52.2
Q ss_pred cccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCcccccccc--ccCCCCCCCcccC
Q 042791 460 IHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMP--IGISKLTNLRTLD 537 (761)
Q Consensus 460 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~ 537 (761)
.+...++|++|.+..++ .|..++.|.+|.+.+|..+..-|.--..+++|..|.+.+|.+. .+. ..+..+++|+.|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 45677888888877553 5567788888988888844444432356778888888888432 211 1244556666666
Q ss_pred ceeec
Q 042791 538 RFVVG 542 (761)
Q Consensus 538 l~~~~ 542 (761)
+-+|+
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 55554
No 390
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.13 E-value=0.013 Score=54.40 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN 67 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~ 67 (761)
+++.+|+|.|.+|+||||+|+.+.. .+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcC
Confidence 3468999999999999999999998 45444
No 391
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.033 Score=55.78 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...|-|.++||||.|||-.|+.++.
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr 406 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELAR 406 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHh
Confidence 3468899999999999999999997
No 392
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.031 Score=59.40 Aligned_cols=87 Identities=20% Similarity=0.183 Sum_probs=47.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhcc--CCeeEEEEecCCCC-HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSNTFD-QIRIAKAIIEGLGESASGLNEFQSLMSRIQSS 113 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~--f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 113 (761)
..+++.|+|+.|+||||++.+++. ..... ...+.+++...... ....+......++.......+...+...+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa--~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~- 425 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ--RFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER- 425 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-
Confidence 457999999999999999988886 33322 24466665533221 1222222233333222222233333333333
Q ss_pred hCCceEEEEEeCCC
Q 042791 114 IKGKKNFLVLDDVW 127 (761)
Q Consensus 114 l~~~~~LlvlDd~~ 127 (761)
+. ..-+||+|..-
T Consensus 426 l~-~~DLVLIDTaG 438 (559)
T PRK12727 426 LR-DYKLVLIDTAG 438 (559)
T ss_pred hc-cCCEEEecCCC
Confidence 22 34588999873
No 393
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.12 E-value=0.00048 Score=75.86 Aligned_cols=61 Identities=23% Similarity=0.182 Sum_probs=40.0
Q ss_pred cccccCccccCCcC-Ccc--CchhhhccCCCcEEecCCc-cCccccc----ccccccccccEeecCCcc
Q 042791 458 KLIHLKYLNLSELG-IER--LPETLCELYNLQKLDIRRC-RNLRELP----AGIGKLMNMRTLLNGETY 518 (761)
Q Consensus 458 ~l~~L~~L~l~~~~-i~~--lp~~~~~l~~L~~L~l~~~-~~~~~lp----~~~~~l~~L~~L~l~~~~ 518 (761)
.++.|+.|.+.++. +.. +-.....+++|+.|++++| ......+ .....+++|+.|+++++.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 46888888888775 443 4456677888999998873 3222221 223556778888887775
No 394
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.11 E-value=0.034 Score=58.48 Aligned_cols=40 Identities=35% Similarity=0.334 Sum_probs=29.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhh-ccCCeeEEEEecC
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIWVCVSN 78 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~-~~f~~~~~v~~~~ 78 (761)
.+.++.++|++|+||||+|..++. ... ..-..+..+++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~--~l~~~~g~kV~lV~~D~ 138 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY--YLKKKQGKKVLLVACDL 138 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH--HHHHhCCCeEEEEeccc
Confidence 478999999999999999988887 433 2223455565543
No 395
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.10 E-value=0.029 Score=54.32 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 35 QNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 35 ~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+++.+++|.|+.|+|||||++.++.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999999997
No 396
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.10 E-value=0.031 Score=57.08 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=38.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhc----cCCeeEEEEecCCCCHHHHHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSNTFDQIRIAKA 88 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~ 88 (761)
....++.|+|++|+|||+++.+++....... .-..++|++....++.+.+.+.
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~ 156 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM 156 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH
Confidence 3467889999999999999988885311111 1147999999888887776543
No 397
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.08 E-value=0.013 Score=63.56 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=37.6
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
++++|....++++.+.+..-.. ....|.|.|++|+||+++|+.+.+
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~----s~~pVLI~GE~GTGKe~~A~~IH~ 264 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR----SSAAVLIQGETGTGKELAAQAIHR 264 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCCCHHHHHHHHHH
Confidence 4589999999998888765432 235788999999999999999987
No 398
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.08 E-value=0.024 Score=53.89 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
..+++|.|+.|.|||||++.++..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999974
No 399
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.06 E-value=0.0032 Score=59.23 Aligned_cols=61 Identities=25% Similarity=0.199 Sum_probs=34.3
Q ss_pred cccccCccccCCc--CCc-cCchhhhccCCCcEEecCCccCc--ccccccccccccccEeecCCccc
Q 042791 458 KLIHLKYLNLSEL--GIE-RLPETLCELYNLQKLDIRRCRNL--RELPAGIGKLMNMRTLLNGETYA 519 (761)
Q Consensus 458 ~l~~L~~L~l~~~--~i~-~lp~~~~~l~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~L~l~~~~~ 519 (761)
.+++|++|.++.| .+. .++-....+++|++|++++|++- ..++. +..+.+|..|++.+|..
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSV 128 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCCc
Confidence 4667777777776 333 45544555577777777776621 12222 34555566666666643
No 400
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.04 E-value=0.0082 Score=51.46 Aligned_cols=40 Identities=25% Similarity=0.132 Sum_probs=29.1
Q ss_pred chHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 18 DEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 18 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
++..++.+.|...- ....+|.+.|+-|+||||+++.+++.
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34455555555332 22458999999999999999999973
No 401
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.04 E-value=0.012 Score=58.73 Aligned_cols=85 Identities=20% Similarity=0.220 Sum_probs=51.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCcHHHHHHH
Q 042791 35 QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESA-----SGLNEFQSLMSR 109 (761)
Q Consensus 35 ~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~ 109 (761)
-+..+++-|+|++|+||||||..++. ..+.....++|++..+..+..- ++.++... .++...++..+.
T Consensus 50 ~p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~ 122 (322)
T PF00154_consen 50 LPRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWI 122 (322)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHH
T ss_pred cccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHH
Confidence 34568999999999999999988776 5555667789998877665532 23333221 112334555555
Q ss_pred HHHHhCC-ceEEEEEeCC
Q 042791 110 IQSSIKG-KKNFLVLDDV 126 (761)
Q Consensus 110 ~~~~l~~-~~~LlvlDd~ 126 (761)
+...++. ..-++|+|-|
T Consensus 123 ~e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 123 AEQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHHHTTSESEEEEE-C
T ss_pred HHHHhhcccccEEEEecC
Confidence 5555543 3348888987
No 402
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.03 E-value=0.0047 Score=46.51 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
+++|.|.+|+||||+++++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999997
No 403
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.01 E-value=0.055 Score=52.80 Aligned_cols=143 Identities=17% Similarity=0.248 Sum_probs=71.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhc----------cCCeeEEEEecCCCC-HHHHHHHHHHHhcCCC-----------
Q 042791 40 VISLVGLGGIGKTTLAQLAYNNDEVKR----------NFEKVIWVCVSNTFD-QIRIAKAIIEGLGESA----------- 97 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~~~~~~~----------~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~----------- 97 (761)
+..|+|++|+|||+||..++....... .=..|+|+....... ...-+..+...++...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 567999999999999988875211111 113467777655432 2222333333321100
Q ss_pred -CC----C---CcHHHHHHHHHHHh-CCceEEEEEeCCCC------CCccCchhHHHhhcC--CCCCcEEEEEecchhhh
Q 042791 98 -SG----L---NEFQSLMSRIQSSI-KGKKNFLVLDDVWD------GDYNKWQPFFRCLKN--GLHGSKILVTTRNESVA 160 (761)
Q Consensus 98 -~~----~---~~~~~~~~~~~~~l-~~~~~LlvlDd~~~------~~~~~~~~l~~~~~~--~~~~~~iiiTtr~~~~~ 160 (761)
.. . .......+.+.+.+ ..+.-++|+|-+-. .+......+...+.. ...++-||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 00 0 01222334444433 34566999997621 122223334433332 12356677776643111
Q ss_pred --------hhc-------CCCCeeecCCCChHHHHHH
Q 042791 161 --------RMM-------GSTDSISIKQLAEEECWSL 182 (761)
Q Consensus 161 --------~~~-------~~~~~~~l~~l~~~ea~~l 182 (761)
... +....+.+.+++++|+.++
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~ 199 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEKM 199 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHhc
Confidence 000 1234678888888888774
No 404
>PRK04328 hypothetical protein; Provisional
Probab=95.99 E-value=0.025 Score=55.43 Aligned_cols=40 Identities=23% Similarity=0.202 Sum_probs=31.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
...++.|.|++|+|||++|.+++. .....-..++|++...
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~--~~~~~ge~~lyis~ee 61 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLW--NGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH--HHHhcCCcEEEEEeeC
Confidence 467899999999999999988776 3233446688888766
No 405
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.014 Score=56.28 Aligned_cols=31 Identities=32% Similarity=0.344 Sum_probs=25.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF 68 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f 68 (761)
..++.++|||++|.|||-+|++|+. .+...|
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa--~mg~nf 194 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAA--TMGVNF 194 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHH--hcCCce
Confidence 3478999999999999999999998 454444
No 406
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.98 E-value=0.032 Score=56.93 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=40.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhh----ccCCeeEEEEecCCCCHHHHHHHHHHHh
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIWVCVSNTFDQIRIAKAIIEGL 93 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~----~~f~~~~~v~~~~~~~~~~~~~~i~~~l 93 (761)
....++.|+|++|+|||+++.+++...... ..-..++|++....++.+.+.+ +++.+
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~ 153 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEAR 153 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHc
Confidence 346788999999999999998887532211 1113799999988888776653 33433
No 407
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.98 E-value=0.015 Score=58.32 Aligned_cols=129 Identities=20% Similarity=0.259 Sum_probs=65.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhh--ccC---CeeEEEE---------e--cCCCCHHHHHHHHHHHhcC------
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVK--RNF---EKVIWVC---------V--SNTFDQIRIAKAIIEGLGE------ 95 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~--~~f---~~~~~v~---------~--~~~~~~~~~~~~i~~~l~~------ 95 (761)
.-++.|+|.+|+||||+.+++....... ..| .+.+-+. . ...++...+++++.+..+.
T Consensus 409 GdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~Ave 488 (593)
T COG2401 409 GDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVE 488 (593)
T ss_pred CCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHHH
Confidence 3578899999999999999998631111 111 1111111 1 1112222444444443332
Q ss_pred -------CC--------CCCCcHHHHHHHHHHHhCCceEEEEEeCCCCC-CccCchhHHHhhcCC--CCCcEEEEEecch
Q 042791 96 -------SA--------SGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG--LHGSKILVTTRNE 157 (761)
Q Consensus 96 -------~~--------~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~~~~~--~~~~~iiiTtr~~ 157 (761)
.+ ....+-+.-..++...+..+.-++++|++... +......+...+... ..|+.+++.|+.+
T Consensus 489 ILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrp 568 (593)
T COG2401 489 ILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP 568 (593)
T ss_pred HHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH
Confidence 11 11122233344566777777789999998431 111111222222221 1366677777777
Q ss_pred hhhhhcCCC
Q 042791 158 SVARMMGST 166 (761)
Q Consensus 158 ~~~~~~~~~ 166 (761)
++..++..+
T Consensus 569 Ev~~AL~PD 577 (593)
T COG2401 569 EVGNALRPD 577 (593)
T ss_pred HHHhccCCc
Confidence 776665443
No 408
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.97 E-value=0.019 Score=56.47 Aligned_cols=33 Identities=30% Similarity=0.314 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEE
Q 042791 40 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV 74 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v 74 (761)
.|+|+|.||+||||+|+++.. .+...-..+.++
T Consensus 3 Liil~G~P~SGKTt~a~~L~~--~~~~~~~~v~~i 35 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKK--YLEEKGKEVVII 35 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHH--HHHHTT--EEEE
T ss_pred EEEEEcCCCCcHHHHHHHHHH--HHHhcCCEEEEE
Confidence 588999999999999999998 444432334444
No 409
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.029 Score=53.43 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=38.6
Q ss_pred ceecccchHHHHHHHHhcCCccC-------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 12 EVCGRVDEKNELLSKLLCESSEQ-------QNGLQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~~~~~~~-------~~~~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
+.=|-+..++++.+...-+-.++ -..++-|.++|.+|.|||-||++|++.
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc
Confidence 34567888888888776554331 245677889999999999999999983
No 410
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.95 E-value=0.047 Score=50.84 Aligned_cols=24 Identities=42% Similarity=0.451 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...+++|.|.+|+||||+|+.+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999997
No 411
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.94 E-value=0.029 Score=56.70 Aligned_cols=38 Identities=32% Similarity=0.316 Sum_probs=28.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEe
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 76 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~ 76 (761)
++.++.+.|++|+||||++.+++. .....-..+..+.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~--~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH--KYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCeEEEEec
Confidence 578999999999999999999997 44433334555544
No 412
>PLN02348 phosphoribulokinase
Probab=95.94 E-value=0.064 Score=54.88 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=23.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 35 QNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 35 ~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+++.+|+|.|.+|+||||+|+.+..
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999998
No 413
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.92 E-value=0.0093 Score=57.11 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..|+|.|++|+||||+|+.+++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999999987
No 414
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.92 E-value=0.23 Score=50.22 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=36.0
Q ss_pred CCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHHh
Q 042791 166 TDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL 224 (761)
Q Consensus 166 ~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 224 (761)
..+++++..+.+|+.+++.-+....--....+ -++.-+++.-.++|+|-.+.-++..+
T Consensus 403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~-~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 403 FVPIEVENYTLDEFEALIDYYLQSNWLLKKVP-GEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhHHHhhcC-cccchhhhhhhcCCCHHHHHHHHHhc
Confidence 45789999999999988765542211110111 13345677778899996666555543
No 415
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.91 E-value=0.015 Score=55.38 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+.++|.|+-|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37889999999999999999884
No 416
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.91 E-value=0.028 Score=63.05 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=56.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCcHHHHHHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESA-----SGLNEFQSLMSRI 110 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~ 110 (761)
+..+++.|+|++|+|||||+.+++. .....-..++|++....+... .++.++... ......++....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~--~a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVA--NAQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 4568999999999999999988775 334445668899877765532 455555432 1233445555555
Q ss_pred HHHhC-CceEEEEEeCCC
Q 042791 111 QSSIK-GKKNFLVLDDVW 127 (761)
Q Consensus 111 ~~~l~-~~~~LlvlDd~~ 127 (761)
...++ +..-++|+|-+.
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 356689999873
No 417
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.90 E-value=0.017 Score=59.50 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=37.5
Q ss_pred CceecccchHHHHHHHHhcC--------CccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 11 GEVCGRVDEKNELLSKLLCE--------SSEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~--------~~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..++|.++..+.+..++... .......++.+.+.|++|+|||++|+.++.
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999988777431 000011257889999999999999999998
No 418
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.90 E-value=0.052 Score=53.08 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
..+++|.|+.|+|||||++.++..
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999973
No 419
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.89 E-value=0.059 Score=52.85 Aligned_cols=52 Identities=13% Similarity=0.236 Sum_probs=37.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-CCeeEEEEecCCCCHHHHHHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSNTFDQIRIAKAIIEG 92 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~~~i~~~ 92 (761)
...++.|.|++|+|||+++.+++.+ .... -..++|++... +..++...+...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~--~~~~~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAEN--IAKKQGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCceEEEeCCC--CHHHHHHHHHHH
Confidence 3468999999999999999988863 3333 45677887665 555666665443
No 420
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.89 E-value=0.034 Score=61.39 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+..+|.|.+|+||||+++++..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~ 189 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLA 189 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46889999999999999988886
No 421
>PRK06547 hypothetical protein; Provisional
Probab=95.87 E-value=0.012 Score=53.72 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+.+|+|.|++|+||||+|+.+++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 422
>PF13479 AAA_24: AAA domain
Probab=95.87 E-value=0.032 Score=53.22 Aligned_cols=32 Identities=34% Similarity=0.345 Sum_probs=24.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT 79 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (761)
.-.++|+|++|+||||+|..+ +..+++.....
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 346789999999999999887 23566665443
No 423
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.08 Score=50.11 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
..+++|.|+.|+|||||++.++..
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 468999999999999999999973
No 424
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.85 E-value=0.02 Score=54.42 Aligned_cols=51 Identities=29% Similarity=0.410 Sum_probs=33.0
Q ss_pred hHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEE
Q 042791 19 EKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 75 (761)
Q Consensus 19 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~ 75 (761)
+..++.+.+... .++..+|+|.|+||+|||||+.++.. .+...-..+.-+.
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~--~~~~~g~~VaVlA 64 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIR--ELRERGKRVAVLA 64 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHH--HHHHTT--EEEEE
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHH--HHhhcCCceEEEE
Confidence 445566666543 34578999999999999999999987 4444433344333
No 425
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.85 E-value=0.074 Score=51.22 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
...+++|.|+.|.|||||++.++..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999963
No 426
>PRK06217 hypothetical protein; Validated
Probab=95.85 E-value=0.026 Score=52.51 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.|+|.|.+|+||||+|++++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999997
No 427
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.083 Score=51.25 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
..+++|.|+.|.|||||++.++..
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999963
No 428
>PF13245 AAA_19: Part of AAA domain
Probab=95.85 E-value=0.016 Score=44.34 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=17.2
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHhc
Q 042791 38 LQVISLVGLGGIGKTTLA-QLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla-~~~~~ 60 (761)
.+++.|.|++|.|||+++ +.+..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357788999999999555 44444
No 429
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.84 E-value=0.019 Score=63.75 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=50.9
Q ss_pred CCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-CCeeEEEEecCCCCHHHHHHH
Q 042791 10 EGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSNTFDQIRIAKA 88 (761)
Q Consensus 10 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~~~ 88 (761)
.++++|+++..+.+...+... +.+.++|++|+||||+|+++++ .+... |..++++.-.. .+...+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~~-~~~~~~~~~ 85 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNPE-DPNMPRIVE 85 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCCC-CCchHHHHH
Confidence 456889999888888877632 3567999999999999999997 44433 33344443322 345555666
Q ss_pred HHHHhcC
Q 042791 89 IIEGLGE 95 (761)
Q Consensus 89 i~~~l~~ 95 (761)
++..++.
T Consensus 86 v~~~~g~ 92 (608)
T TIGR00764 86 VPAGEGR 92 (608)
T ss_pred HHHhhch
Confidence 6666554
No 430
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.84 E-value=0.029 Score=52.94 Aligned_cols=83 Identities=20% Similarity=0.272 Sum_probs=50.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCC-CHHHHHHHHHHHhcC-------CCCCCCcH------
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF-DQIRIAKAIIEGLGE-------SASGLNEF------ 103 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~------ 103 (761)
.+.++|.|.+|+|||+|+..+++. . .-+.++|+.++... ...++.+.+...-.. ...+....
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~--~--~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANN--Q--DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--C--TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhc--c--cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 357889999999999999999873 2 23455788776543 444555555433111 11111111
Q ss_pred ---HHHHHHHHHHhCCceEEEEEeCC
Q 042791 104 ---QSLMSRIQSSIKGKKNFLVLDDV 126 (761)
Q Consensus 104 ---~~~~~~~~~~l~~~~~LlvlDd~ 126 (761)
-...+.+++ +++.+|+++||+
T Consensus 91 ~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred ccchhhhHHHhh--cCCceeehhhhh
Confidence 112222333 689999999998
No 431
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.84 E-value=0.06 Score=50.89 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
..+++|.|+.|.|||||++.++..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999873
No 432
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.83 E-value=0.014 Score=48.92 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=33.9
Q ss_pred ceecccc----hHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 12 EVCGRVD----EKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 12 ~~vgr~~----~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
+++|.+- .++.+..++..+. .+++-++.++|++|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~---p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN---PRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC---CCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 3566554 4445555565443 356889999999999999999999974
No 433
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.82 E-value=0.044 Score=53.16 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=33.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIA 86 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 86 (761)
.....+.|.|++|+||||++.+++. .....-..++|++... +.+.+.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~--~~~~~g~~~~~is~e~--~~~~i~ 64 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAY--KGLRDGDPVIYVTTEE--SRESII 64 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHH--HHHhcCCeEEEEEccC--CHHHHH
Confidence 3457899999999999999988775 2223445788887644 344443
No 434
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.82 E-value=0.03 Score=58.19 Aligned_cols=39 Identities=36% Similarity=0.509 Sum_probs=30.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhh--hccCCeeEEEEecCC
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEV--KRNFEKVIWVCVSNT 79 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~--~~~f~~~~~v~~~~~ 79 (761)
++++|.|.||+|||.||-.++. ++ ......+.+++.+..
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~--~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAK--ELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHH--HhhccccCCceEEEEecch
Confidence 5789999999999999999998 44 455666777766663
No 435
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.81 E-value=0.0069 Score=70.32 Aligned_cols=196 Identities=15% Similarity=0.125 Sum_probs=101.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhcc---CCeeEEEEecCCCCHH------HHHHHHHHHhcCCCCCCCcHHHHHH
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRN---FEKVIWVCVSNTFDQI------RIAKAIIEGLGESASGLNEFQSLMS 108 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~---f~~~~~v~~~~~~~~~------~~~~~i~~~l~~~~~~~~~~~~~~~ 108 (761)
...+.|.|.+|.||||....++-. ...+. -+..+++.+....... .+..-+...+.... .......
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~-~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~----~~~~~~~ 296 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALW-LAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG----IAKQLIE 296 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHH-hccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC----CcchhhH
Confidence 346789999999999999877752 12222 2334444443211111 22222222222211 1112222
Q ss_pred HHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcC---CCCCcEEEEEecchhhhhhcCCCCeeecCCCChHHHHHHHH-
Q 042791 109 RIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKN---GLHGSKILVTTRNESVARMMGSTDSISIKQLAEEECWSLFK- 184 (761)
Q Consensus 109 ~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~---~~~~~~iiiTtr~~~~~~~~~~~~~~~l~~l~~~ea~~l~~- 184 (761)
...+.++..++++++|++|.............+.. .-+.+.+|+|+|....-........+++..+.++.......
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~ 376 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILY 376 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHH
Confidence 23567788999999999987444444333333322 23467899999986544443345567777777766654433
Q ss_pred ----HHhhCCCCCCCCC---ch----hHHHHHHHHhcCCCchhHHHHHHHhhC-----CCCHHHHHHHHhh
Q 042791 185 ----QLAFFGCSFEDCE---KL----EPIGRKIACKCKGLPLAAKVIGNLLRS-----KSTVKEWQRILES 239 (761)
Q Consensus 185 ----~~~~~~~~~~~~~---~~----~~~~~~i~~~~~g~Plal~~~~~~l~~-----~~~~~~~~~~l~~ 239 (761)
............. .. .+..+.| +.....|++|.+.+..-.. ....+-|+..++.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i-k~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~ 446 (824)
T COG5635 377 QWLDAFIEDWFGDSRLLAKKLLERLKLPENRRI-KELALTPLLLALECLIWQAQGDLPESRAELYEQAVDA 446 (824)
T ss_pred HHHHHHHHhhhcccchhhHHHHHHhcchhhHHH-HHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHH
Confidence 1111111111111 00 0112333 3347789999888744431 2345666666554
No 436
>PTZ00301 uridine kinase; Provisional
Probab=95.81 E-value=0.013 Score=55.19 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+|+|.|++|+||||+|+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47899999999999999999886
No 437
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.80 E-value=0.09 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|.|||||++.++.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999986
No 438
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.80 E-value=0.054 Score=52.20 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999996
No 439
>PRK04040 adenylate kinase; Provisional
Probab=95.79 E-value=0.0089 Score=55.51 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+++|+|+|++|+||||+++.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999997
No 440
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.78 E-value=0.015 Score=53.16 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.|.|.|++|+||||+|+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~ 22 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAK 22 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999998
No 441
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.78 E-value=0.074 Score=57.77 Aligned_cols=62 Identities=18% Similarity=0.089 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHH
Q 042791 20 KNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAI 89 (761)
Q Consensus 20 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 89 (761)
+..+.+.|... -.+..++.|.|++|+|||||+.+++. .....-..++|+.... +...+....
T Consensus 249 i~~lD~~lgGG----~~~gs~~li~G~~G~GKt~l~~~f~~--~~~~~ge~~~y~s~eE--s~~~i~~~~ 310 (484)
T TIGR02655 249 VVRLDEMCGGG----FFKDSIILATGATGTGKTLLVSKFLE--NACANKERAILFAYEE--SRAQLLRNA 310 (484)
T ss_pred hHhHHHHhcCC----ccCCcEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeC--CHHHHHHHH
Confidence 44555555432 34567899999999999999999987 4444556688887655 445554443
No 442
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.78 E-value=0.08 Score=46.35 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
-.+.|.|++|.|||||.++++.
T Consensus 30 e~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHh
Confidence 4678999999999999999997
No 443
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.77 E-value=0.19 Score=48.76 Aligned_cols=126 Identities=10% Similarity=0.119 Sum_probs=75.4
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHH
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIR 84 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (761)
-+......|++-....+ +..++... ....+.+.++|.+|+|||+-++.+++. .+.++.+..+...+...
T Consensus 66 ~~~~~~~~~l~tkt~r~-~~~~~~~A----~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~ 134 (297)
T COG2842 66 ALEKLAPDFLETKTVRR-IFFRTRPA----SKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALV 134 (297)
T ss_pred ccccccccccccchhHh-Hhhhhhhh----hhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHH
Confidence 34444555666544322 22222222 122348899999999999999999972 24455556666666666
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcC
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKN 143 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 143 (761)
+...+......... .............+++..-++++|+.+.-....++.+......
T Consensus 135 ~i~~i~~~~~~~~~--~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 135 LILIICAAAFGATD--GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred HHHHHHHHHhcccc--hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh
Confidence 66666655544322 2233344445555677788999999977555555555544433
No 444
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.77 E-value=0.04 Score=54.13 Aligned_cols=86 Identities=21% Similarity=0.162 Sum_probs=47.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCC-------CCCCcHHHHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESA-------SGLNEFQSLMS 108 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~~ 108 (761)
.+..+|.|.|.+|+|||||+..+.. .+.... .++.+. .+..+..+ . ..+...+..- .-..+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~-~~~VI~-gD~~t~~D-a-~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSV-PCAVIE-GDQQTVND-A-ARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCC-CEEEEC-CCcCcHHH-H-HHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 4578999999999999999999987 444443 233332 22222222 1 1223322211 11223344444
Q ss_pred HHHHHhCCceEEEEEeCCC
Q 042791 109 RIQSSIKGKKNFLVLDDVW 127 (761)
Q Consensus 109 ~~~~~l~~~~~LlvlDd~~ 127 (761)
.+........-++|++++.
T Consensus 176 Al~~L~~~~~d~liIEnvG 194 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVG 194 (290)
T ss_pred HHHHHhhcCCcEEEEECCC
Confidence 4444433444678999984
No 445
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.76 E-value=0.081 Score=56.56 Aligned_cols=41 Identities=29% Similarity=0.295 Sum_probs=31.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
....++.|.|++|+||||++.+++. .....-..++|++...
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~--~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVAC--QLAKNQMKVLYVSGEE 132 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHH--HHHhcCCcEEEEECcC
Confidence 3467899999999999999999986 3333334688887654
No 446
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.76 E-value=0.067 Score=51.58 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
...+++|.|+.|+|||||++.++..
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999973
No 447
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.75 E-value=0.21 Score=44.06 Aligned_cols=126 Identities=17% Similarity=0.251 Sum_probs=73.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC-----------------------hhhhccCCeeEEEE------------------e
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNN-----------------------DEVKRNFEKVIWVC------------------V 76 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~-----------------------~~~~~~f~~~~~v~------------------~ 76 (761)
...|.|+|++|.|||||.-.++-- ..++..--+.+|=. .
T Consensus 36 Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL 115 (228)
T COG4181 36 GETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLEL 115 (228)
T ss_pred CceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhh
Confidence 457899999999999999777741 01111111111211 0
Q ss_pred cC--CCCHHHHHHHHHHHhcCCC------CCCCcHHHHHHHHHHHhCCceEEEEEeCC----CCCCccCchhHHHhhcCC
Q 042791 77 SN--TFDQIRIAKAIIEGLGESA------SGLNEFQSLMSRIQSSIKGKKNFLVLDDV----WDGDYNKWQPFFRCLKNG 144 (761)
Q Consensus 77 ~~--~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~~~~~l~~~~~LlvlDd~----~~~~~~~~~~l~~~~~~~ 144 (761)
.. ..+.....+.++.+++... .+...-++..-.+.+.+..++-+++-|+- |...-.....+.-.+. .
T Consensus 116 ~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln-r 194 (228)
T COG4181 116 RGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN-R 194 (228)
T ss_pred cCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHh-h
Confidence 11 2344556777777776532 22334455556677888888888888864 3322223333333332 2
Q ss_pred CCCcEEEEEecchhhhhhcC
Q 042791 145 LHGSKILVTTRNESVARMMG 164 (761)
Q Consensus 145 ~~~~~iiiTtr~~~~~~~~~ 164 (761)
..|..+|..|.++.++..|.
T Consensus 195 e~G~TlVlVTHD~~LA~Rc~ 214 (228)
T COG4181 195 ERGTTLVLVTHDPQLAARCD 214 (228)
T ss_pred hcCceEEEEeCCHHHHHhhh
Confidence 34777888889998887653
No 448
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.75 E-value=0.047 Score=57.17 Aligned_cols=86 Identities=17% Similarity=0.165 Sum_probs=47.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcC------CCCCCCcH-----HHH
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGE------SASGLNEF-----QSL 106 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~------~~~~~~~~-----~~~ 106 (761)
.+.++|.|++|+|||||++.++.. .....+++++..........+.......... ...+.... ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l---~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARA---DAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC---CCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 467899999999999999998862 2223344444333334444443333332211 01111111 112
Q ss_pred HHHHHHHh--CCceEEEEEeCC
Q 042791 107 MSRIQSSI--KGKKNFLVLDDV 126 (761)
Q Consensus 107 ~~~~~~~l--~~~~~LlvlDd~ 126 (761)
.-.+.+++ +++.+|+++|++
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22233444 478999999998
No 449
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.74 E-value=0.03 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...++|.|+.|.|||||++.++.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFG 48 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45889999999999999999997
No 450
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.73 E-value=0.062 Score=50.78 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
..+++|.|+.|.|||||++.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 451
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.73 E-value=0.02 Score=52.84 Aligned_cols=21 Identities=43% Similarity=0.613 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
+|+|.|.+|+||||+|+.++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999997
No 452
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.72 E-value=0.013 Score=58.92 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=31.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHH
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIR 84 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (761)
|++++.|.||+||||+|.+.+- .....-..++-++.....+..+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~--~~A~~G~rtLlvS~Dpa~~L~d 45 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL--ALARRGKRTLLVSTDPAHSLSD 45 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HHHHTTS-EEEEESSTTTHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH--HHhhCCCCeeEeecCCCccHHH
Confidence 5899999999999999988886 4545545576676555444433
No 453
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.71 E-value=0.02 Score=53.51 Aligned_cols=44 Identities=23% Similarity=0.166 Sum_probs=31.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHH
Q 042791 41 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKA 88 (761)
Q Consensus 41 v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~ 88 (761)
+.|.|++|+|||++|.+++. .....-..++|++... +.+.+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~--~~~~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLY--AGLARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCC--CHHHHHHH
Confidence 67999999999999998876 3334446688887654 44444433
No 454
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.69 E-value=0.062 Score=50.48 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
++++|.|+.|.||||+++.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999985
No 455
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.68 E-value=0.026 Score=55.89 Aligned_cols=52 Identities=23% Similarity=0.224 Sum_probs=40.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIE 91 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~ 91 (761)
+..+++.|+|.+|+|||+++.+++. ........++||+... +..++.+...+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e--~~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEE--SPEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecC--CHHHHHHHHHH
Confidence 5578999999999999999999987 5556678899998776 45555544443
No 456
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.65 E-value=0.01 Score=56.49 Aligned_cols=24 Identities=38% Similarity=0.464 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...+|+|.|++|+|||||+++++.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999986
No 457
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.65 E-value=0.027 Score=61.48 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=72.6
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAII 90 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 90 (761)
..++|+...+.++.+.+.... .....|.|.|.+|+|||++|+.+... ....-...+.+++... +...+...+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~--s~~~~~~~i~i~c~~~-~~~~~~~~lf 210 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH--SPRAKAPFIALNMAAI-PKDLIESELF 210 (469)
T ss_pred ccceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc--CCCCCCCeEeeeCCCC-CHHHHHHHhc
Confidence 468999888888877765433 22456889999999999999999873 2222233445555543 2222222221
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCC-----------CCcEEEEEecc
Q 042791 91 EGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTRN 156 (761)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~~~~iiiTtr~ 156 (761)
..-.......... ....+. ....--++||+++.-.......+...+.... ...|||+||..
T Consensus 211 g~~~g~~~~~~~~--~~g~~~---~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~ 282 (469)
T PRK10923 211 GHEKGAFTGANTI--RQGRFE---QADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQ 282 (469)
T ss_pred CCCCCCCCCCCcC--CCCCee---ECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCC
Confidence 1111100000000 000000 1112246889998766666667777665421 12388888864
No 458
>COG4240 Predicted kinase [General function prediction only]
Probab=95.64 E-value=0.051 Score=49.94 Aligned_cols=82 Identities=12% Similarity=0.166 Sum_probs=51.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC-CeeEEEEecCCCCHHHHHHHHHHHhc-----CCCCCCCcHHHHHH
Q 042791 35 QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSNTFDQIRIAKAIIEGLG-----ESASGLNEFQSLMS 108 (761)
Q Consensus 35 ~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~ 108 (761)
.+++-+++|+|+-|+||||++..++. .+...+ ..+...+..+-.-...-...++++.. ...+...+..-..+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~--~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlgln 124 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVR--LLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLN 124 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHH--HHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHH
Confidence 46689999999999999999999998 454444 46666665554333333334444432 22344455555556
Q ss_pred HHHHHhCCce
Q 042791 109 RIQSSIKGKK 118 (761)
Q Consensus 109 ~~~~~l~~~~ 118 (761)
.+....+++.
T Consensus 125 VLnai~~g~~ 134 (300)
T COG4240 125 VLNAIARGGP 134 (300)
T ss_pred HHHHHhcCCC
Confidence 6666555553
No 459
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.62 E-value=0.028 Score=54.14 Aligned_cols=39 Identities=28% Similarity=0.314 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 20 KNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 20 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
++.+..++..+. -.++-++.++|.+|+||+-+++.+++.
T Consensus 95 v~alk~~~~n~~---p~KPLvLSfHG~tGTGKN~Va~iiA~n 133 (344)
T KOG2170|consen 95 VNALKSHWANPN---PRKPLVLSFHGWTGTGKNYVAEIIAEN 133 (344)
T ss_pred HHHHHHHhcCCC---CCCCeEEEecCCCCCchhHHHHHHHHH
Confidence 344444454443 356889999999999999999999984
No 460
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.62 E-value=0.018 Score=63.66 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=56.7
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhh-ccCCeeEEEEecCCCCHHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIWVCVSNTFDQIR 84 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~-~~f~~~~~v~~~~~~~~~~ 84 (761)
|+.--++++|.++.++.+...+... +.+.++|++|+||||+|+++++ .+. ..++..+|... ...+...
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~--~l~~~~~~~~~~~~n-p~~~~~~ 94 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAE--LLPKEELQDILVYPN-PEDPNNP 94 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHH--HcChHhHHHheEeeC-CCcchHH
Confidence 3344456899999988888877532 3688999999999999999997 333 33466777655 3346677
Q ss_pred HHHHHHHHhcC
Q 042791 85 IAKAIIEGLGE 95 (761)
Q Consensus 85 ~~~~i~~~l~~ 95 (761)
+++.+...++.
T Consensus 95 ~~~~v~~~~G~ 105 (637)
T PRK13765 95 KIRTVPAGKGK 105 (637)
T ss_pred HHHHHHHhcCH
Confidence 77777766553
No 461
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.61 E-value=0.052 Score=52.77 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=53.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhh--hccCCeeEEEEecCCC-CHHHHHHHHHHHhcCC-------CCCCCcH---
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEV--KRNFEKVIWVCVSNTF-DQIRIAKAIIEGLGES-------ASGLNEF--- 103 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~--~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~--- 103 (761)
+.+.++|.|.+|+|||+|+.+++++... +..-+.++|+-+++.. ...++...+...-... ..+....
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4567899999999999999998874221 1223667888876654 3455555554432111 1111111
Q ss_pred --HHHHHHHHHHh--C-CceEEEEEeCC
Q 042791 104 --QSLMSRIQSSI--K-GKKNFLVLDDV 126 (761)
Q Consensus 104 --~~~~~~~~~~l--~-~~~~LlvlDd~ 126 (761)
....-.+.+++ + ++++|+++||+
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 11223344544 2 68999999998
No 462
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.61 E-value=0.0086 Score=55.33 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...|+|.|++|+||||+|++++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999997
No 463
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.60 E-value=0.094 Score=49.83 Aligned_cols=24 Identities=42% Similarity=0.552 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
..+++|.|+.|+|||||++.++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999873
No 464
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.59 E-value=0.0077 Score=56.75 Aligned_cols=65 Identities=37% Similarity=0.430 Sum_probs=30.0
Q ss_pred hccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccCc--hhhhccCCCcEEecCCcc
Q 042791 423 FSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERLP--ETLCELYNLQKLDIRRCR 494 (761)
Q Consensus 423 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~ 494 (761)
|..+++|+.|+++.|++.. .. .++.....+++|++|++++|+|..+- ..+..+.+|..||+.+|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~----~~---~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRV----SG---GLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCCcchhhhhcccCCcccc----cc---cceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 3445556666666552211 00 22222334456666666666554211 123444555556665555
No 465
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.59 E-value=0.036 Score=54.63 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=45.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGK 117 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 117 (761)
.+.++|.|+.|.||||+++++.. .+...-..++.+.-..+.....+ .+....... .....+.++..++..
T Consensus 80 ~GlilisG~tGSGKTT~l~all~--~i~~~~~~iitiEdp~E~~~~~~-----~q~~v~~~~---~~~~~~~l~~~lR~~ 149 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALS--ELNTPEKNIITVEDPVEYQIPGI-----NQVQVNEKA---GLTFARGLRAILRQD 149 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeEEEECCCceecCCCc-----eEEEeCCcC---CcCHHHHHHHHhccC
Confidence 35899999999999999998876 33322223333322211111100 011111111 113455667778888
Q ss_pred eEEEEEeCCCC
Q 042791 118 KNFLVLDDVWD 128 (761)
Q Consensus 118 ~~LlvlDd~~~ 128 (761)
+=.|+++++.+
T Consensus 150 PD~i~vgEiR~ 160 (264)
T cd01129 150 PDIIMVGEIRD 160 (264)
T ss_pred CCEEEeccCCC
Confidence 88999999943
No 466
>PRK03839 putative kinase; Provisional
Probab=95.59 E-value=0.0084 Score=55.65 Aligned_cols=21 Identities=38% Similarity=0.716 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.|+|.|++|+||||+++++++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999998
No 467
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.59 E-value=0.065 Score=50.39 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=27.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccC--------CeeEEEEecCC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNF--------EKVIWVCVSNT 79 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f--------~~~~~v~~~~~ 79 (761)
...+.|.|++|+||||++.+++........| ..++|+.....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 3578899999999999998888632211112 35778876654
No 468
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.59 E-value=0.1 Score=58.82 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...++|.|+.|.|||||++.+..
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46789999999999999999986
No 469
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.57 E-value=0.071 Score=55.75 Aligned_cols=39 Identities=36% Similarity=0.343 Sum_probs=28.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEe
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 76 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~ 76 (761)
..+.+|.++|++|+||||++.+++. .....-..+..+++
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~--~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY--YYQRKGFKPCLVCA 136 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCCEEEEcC
Confidence 3478999999999999999998886 44433334555554
No 470
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.57 E-value=0.022 Score=59.38 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=35.5
Q ss_pred eecccchHHHHHHHHh--cCCccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 13 VCGRVDEKNELLSKLL--CESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 13 ~vgr~~~~~~l~~~l~--~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+--....+.++..||. ..... .-+.+++.|.|++|+||||.++.++.
T Consensus 84 LAVHkkKI~eVk~WL~~~~~~~~-~l~~~iLLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970|consen 84 LAVHKKKISEVKQWLKQVAEFTP-KLGSRILLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred HhhhHHhHHHHHHHHHHHHHhcc-CCCceEEEEeCCCCCCchhHHHHHHH
Confidence 4445667788888887 11111 34567999999999999999999997
No 471
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.57 E-value=0.14 Score=49.45 Aligned_cols=58 Identities=9% Similarity=0.113 Sum_probs=40.3
Q ss_pred ceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc-hhhhhhc-CCCCeeecCCC
Q 042791 117 KKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVARMM-GSTDSISIKQL 174 (761)
Q Consensus 117 ~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~-~~~~~~~-~~~~~~~l~~l 174 (761)
.+-++|+|+++.........++..+..-...+.+|++|.+ ..+.+.. .....+.+.+.
T Consensus 88 ~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~ 147 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSK 147 (261)
T ss_pred CCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCCh
Confidence 4567899999887788889999988887667777766665 4454443 22345666555
No 472
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.56 E-value=0.018 Score=51.18 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=30.3
Q ss_pred cchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 17 VDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 17 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
.+.++++.+++.. +++++.|+.|+|||||++.+..+
T Consensus 23 ~~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhh
Confidence 4567888888852 68999999999999999999974
No 473
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.55 E-value=0.0033 Score=34.79 Aligned_cols=9 Identities=33% Similarity=0.449 Sum_probs=3.6
Q ss_pred CcEEecCCc
Q 042791 485 LQKLDIRRC 493 (761)
Q Consensus 485 L~~L~l~~~ 493 (761)
|++||+++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 333444443
No 474
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.55 E-value=0.023 Score=57.02 Aligned_cols=47 Identities=23% Similarity=0.344 Sum_probs=34.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHH
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIA 86 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 86 (761)
.+++++.|.|||||||+|.+.+- ........++-|....-.+..+++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f 48 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVF 48 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhh
Confidence 47999999999999999988776 444444557777666555555443
No 475
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.52 E-value=0.011 Score=54.57 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+++++.|++|+||||+|+++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 476
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.51 E-value=0.019 Score=53.04 Aligned_cols=43 Identities=26% Similarity=0.270 Sum_probs=31.9
Q ss_pred CCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 10 EGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 10 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
-++++|.+.....+.-.... .+-+.+.|++|+|||++|+.+..
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 35678888777777665542 35789999999999999999986
No 477
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.51 E-value=0.11 Score=50.59 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
..+++|.|+.|+|||||++.++..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999963
No 478
>PRK00625 shikimate kinase; Provisional
Probab=95.50 E-value=0.0094 Score=54.35 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.|+|.|++|+||||+++.+++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 479
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.49 E-value=0.032 Score=54.82 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 042791 41 ISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 41 v~i~G~~GiGKTtla~~~~~ 60 (761)
|++.|.+|+||||+|++++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999997
No 480
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.48 E-value=0.013 Score=59.36 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=37.1
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+..-+.++|.++..+.+.-.+... +.+.+.+.|++|+||||+|+.++.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~------~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDP------GIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhcc------CCCcEEEEcCCCCCHHHHHHHHHH
Confidence 445667899999988877544322 234688999999999999999986
No 481
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.48 E-value=0.013 Score=52.49 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
...++|.||+|+|||||++++..+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468899999999999999999984
No 482
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=95.47 E-value=0.084 Score=57.59 Aligned_cols=161 Identities=16% Similarity=0.206 Sum_probs=85.0
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAII 90 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 90 (761)
..++|......++.+.+.... .....+.|.|.+|+||+++|+++... ........+-+++... . .+.+...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~ih~~--~~~~~~~~~~~~c~~~-~-~~~~~~~l 205 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS----RSDITVLINGESGTGKELVARALHRH--SPRANGPFIALNMAAI-P-KDLIESEL 205 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh----CcCCeEEEECCCCCCHHHHHHHHHHh--CCCCCCCeEEEeCCCC-C-HHHHHHHh
Confidence 458888777777777665432 22346789999999999999999862 2222233344555443 2 22222221
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHh-CCceEEEEEeCCCCCCccCchhHHHhhcCCC-----------CCcEEEEEecchh
Q 042791 91 EGLGESASGLNEFQSLMSRIQSSI-KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTRNES 158 (761)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~~~~iiiTtr~~~ 158 (761)
++........... . ....+ ....-.|+||+++.-....+..+...+.... ...|||+||...-
T Consensus 206 --fg~~~~~~~~~~~--~-~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l 280 (463)
T TIGR01818 206 --FGHEKGAFTGANT--R-RQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNL 280 (463)
T ss_pred --cCCCCCCCCCccc--C-CCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCH
Confidence 2211100000000 0 00001 1123348899998766666667776665321 1357888876421
Q ss_pred ------------hhhhcCCCCeeecCCCC--hHHHHHHHHH
Q 042791 159 ------------VARMMGSTDSISIKQLA--EEECWSLFKQ 185 (761)
Q Consensus 159 ------------~~~~~~~~~~~~l~~l~--~~ea~~l~~~ 185 (761)
+...+ ....+.+++|. .++...|+..
T Consensus 281 ~~~~~~~~f~~~L~~rl-~~~~i~lPpLr~R~~Di~~l~~~ 320 (463)
T TIGR01818 281 EALVRQGKFREDLFHRL-NVIRIHLPPLRERREDIPRLARH 320 (463)
T ss_pred HHHHHcCCcHHHHHHHh-CcceecCCCcccchhhHHHHHHH
Confidence 11111 12478888887 4555554443
No 483
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.47 E-value=0.14 Score=50.24 Aligned_cols=88 Identities=14% Similarity=0.220 Sum_probs=47.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHH--HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIR--IAKAIIEGLGESASGLNEFQSLMSRIQSSIK 115 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 115 (761)
...+.+.|++|+||||+++.++. .....-..+.++.+... .... -....++.++-......+...+.+.+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~--~l~~~~~~v~~i~~D~~-ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAW--QFHGKKKTVGFITTDHS-RIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEEecCCC-CHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 46889999999999999998886 34333345666665433 2221 1122222232221122333444443333222
Q ss_pred -CceEEEEEeCCCC
Q 042791 116 -GKKNFLVLDDVWD 128 (761)
Q Consensus 116 -~~~~LlvlDd~~~ 128 (761)
.+.=++++|..-.
T Consensus 152 ~~~~D~ViIDt~Gr 165 (270)
T PRK06731 152 EARVDYILIDTAGK 165 (270)
T ss_pred cCCCCEEEEECCCC
Confidence 2446889998844
No 484
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.45 E-value=0.013 Score=54.59 Aligned_cols=37 Identities=35% Similarity=0.442 Sum_probs=28.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEe
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 76 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~ 76 (761)
.|+++|.|++|+|||||+++++. .....|..++..+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 47899999999999999999997 55556654444443
No 485
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.45 E-value=0.13 Score=50.14 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
..+++|.|+.|.|||||++.++..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999863
No 486
>PRK15453 phosphoribulokinase; Provisional
Probab=95.44 E-value=0.093 Score=51.11 Aligned_cols=77 Identities=19% Similarity=0.157 Sum_probs=43.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCC--CHHHHHHHHH--HHhc--CCC--CCCCcHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF--DQIRIAKAII--EGLG--ESA--SGLNEFQSLMS 108 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~--~~~~~~~~i~--~~l~--~~~--~~~~~~~~~~~ 108 (761)
+..+|+|.|.+|+||||+|+++++ .+...-..+..++..... +....-..+. ..-+ -.. +...+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~--if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK--IFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 457999999999999999999986 343322234455443322 2222211111 1111 112 45566677766
Q ss_pred HHHHHhC
Q 042791 109 RIQSSIK 115 (761)
Q Consensus 109 ~~~~~l~ 115 (761)
.++....
T Consensus 82 ~l~~l~~ 88 (290)
T PRK15453 82 LFREYGE 88 (290)
T ss_pred HHHHHhc
Confidence 6666543
No 487
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.43 E-value=0.079 Score=50.20 Aligned_cols=60 Identities=23% Similarity=0.209 Sum_probs=37.0
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCC--eeEE-------EEecCCCCHHH--HHHHHHHHhcCC
Q 042791 35 QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFE--KVIW-------VCVSNTFDQIR--IAKAIIEGLGES 96 (761)
Q Consensus 35 ~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~--~~~~-------v~~~~~~~~~~--~~~~i~~~l~~~ 96 (761)
-.++..+++.||+|.||||.++.+.. .+...+. .++- ++...+.++++ -++++.++....
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~--hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNS--HLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHH--HHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 34578899999999999999988886 3333332 2221 12233344444 256677776544
No 488
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.42 E-value=0.12 Score=52.52 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
..+++|.|+.|.|||||.+.++..
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999963
No 489
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.42 E-value=0.024 Score=55.30 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhh-------hccCCeeEEEEecCCCCHHHHHHHHHH
Q 042791 40 VISLVGLGGIGKTTLAQLAYNNDEV-------KRNFEKVIWVCVSNTFDQIRIAKAIIE 91 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~~~~~-------~~~f~~~~~v~~~~~~~~~~~~~~i~~ 91 (761)
+.+|+|++|+||||++..+.. .+ ...-...+.+....+...+.++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~--~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIA--QLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHH--HH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHH--HhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 689999999999987766665 33 133344555555555455555544443
No 490
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.42 E-value=0.028 Score=51.49 Aligned_cols=49 Identities=27% Similarity=0.237 Sum_probs=33.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHH
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIE 91 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~ 91 (761)
..+|+|-||-|+||||||+++++ +.+ +. +++-.+.+++=.+.++.+..+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~--~l~--~~-~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAE--HLG--FK-VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHH--HhC--Cc-eeeecccCChHHHHHHHhHHH
Confidence 46899999999999999999998 443 22 444445555444445444443
No 491
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.41 E-value=0.11 Score=49.10 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
..+++|.|+.|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999963
No 492
>PHA02774 E1; Provisional
Probab=95.41 E-value=0.064 Score=57.43 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=27.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEe
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 76 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~ 76 (761)
++...++|+|++|+|||.+|..+++ .+. ...+.|++.
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~--~L~--G~vi~fvN~ 468 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIK--FLK--GKVISFVNS 468 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHH--HhC--CCEEEEEEC
Confidence 3446899999999999999999997 332 334567764
No 493
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.39 E-value=0.029 Score=61.79 Aligned_cols=23 Identities=26% Similarity=0.164 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.++.+|.|.+|+||||++.++..
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~ 182 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLL 182 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 36889999999999999988876
No 494
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.39 E-value=0.026 Score=51.35 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 042791 41 ISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 41 v~i~G~~GiGKTtla~~~~~ 60 (761)
++|.|++|+||||+|+++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999997
No 495
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.38 E-value=0.12 Score=58.66 Aligned_cols=127 Identities=19% Similarity=0.233 Sum_probs=70.9
Q ss_pred cchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCC--CHHHHHHHHHHHhc
Q 042791 17 VDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF--DQIRIAKAIIEGLG 94 (761)
Q Consensus 17 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~--~~~~~~~~i~~~l~ 94 (761)
.....+|.+.+.. .++|+|.|+.|.||||-+-+++.+. .....+.+ .+.++. ...++...++++++
T Consensus 52 ~~~~~~i~~ai~~--------~~vvii~getGsGKTTqlP~~lle~--g~~~~g~I--~~tQPRRlAArsvA~RvAeel~ 119 (845)
T COG1643 52 TAVRDEILKAIEQ--------NQVVIIVGETGSGKTTQLPQFLLEE--GLGIAGKI--GCTQPRRLAARSVAERVAEELG 119 (845)
T ss_pred HHHHHHHHHHHHh--------CCEEEEeCCCCCChHHHHHHHHHhh--hcccCCeE--EecCchHHHHHHHHHHHHHHhC
Confidence 3455667777753 3589999999999999997777531 11223333 333433 34567888888887
Q ss_pred CCCCC-----------C--------CcHHHHHHHHH-HHhCCceEEEEEeCCCCCCccCchhHHHhhcC----CCCCcEE
Q 042791 95 ESASG-----------L--------NEFQSLMSRIQ-SSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKN----GLHGSKI 150 (761)
Q Consensus 95 ~~~~~-----------~--------~~~~~~~~~~~-~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~----~~~~~~i 150 (761)
..... . ....-+...++ ...-.+=-.+|+|++++.+ -+.+-++..+.+ ..+.-||
T Consensus 120 ~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERS-l~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 120 EKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERS-LNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred CCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhh-HHHHHHHHHHHHHHhhcCCCceE
Confidence 63211 0 01122222222 1111223389999997632 233444443332 2234789
Q ss_pred EEEecc
Q 042791 151 LVTTRN 156 (761)
Q Consensus 151 iiTtr~ 156 (761)
||+|=.
T Consensus 199 IimSAT 204 (845)
T COG1643 199 IIMSAT 204 (845)
T ss_pred EEEecc
Confidence 999765
No 496
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.37 E-value=0.016 Score=53.72 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
++++++|.|++|+|||||++++..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999999999987
No 497
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.37 E-value=0.073 Score=49.88 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|.|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999996
No 498
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.36 E-value=0.12 Score=57.53 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+...++|+|+.|.|||||++.+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456889999999999999999986
No 499
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.34 E-value=0.087 Score=49.47 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...++|.|+.|.|||||.+.++.
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999997
No 500
>COG3910 Predicted ATPase [General function prediction only]
Probab=95.34 E-value=0.21 Score=44.80 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+.++.+|.|..|+|||||..+++.
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~ 59 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAA 59 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHh
Confidence 457899999999999999988885
Done!