Query 042791
Match_columns 761
No_of_seqs 324 out of 3675
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 16:41:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.8E-40 1.6E-44 361.5 24.3 315 14-356 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.1E-32 3.7E-37 304.5 17.9 284 13-348 130-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-31 6.3E-36 327.2 26.7 315 5-355 118-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 7.5E-30 2.6E-34 285.6 26.4 309 6-352 119-449 (591)
5 4eco_A Uncharacterized protein 100.0 5.5E-29 1.9E-33 279.8 12.0 366 374-758 81-599 (636)
6 3rgz_A Protein brassinosteroid 100.0 5.3E-29 1.8E-33 286.7 9.6 346 374-757 294-715 (768)
7 4eco_A Uncharacterized protein 99.9 7.3E-28 2.5E-32 270.6 13.8 362 373-760 205-633 (636)
8 4ecn_A Leucine-rich repeat pro 99.9 7.3E-28 2.5E-32 274.4 13.4 342 372-759 446-840 (876)
9 3vq2_A TLR4, TOLL-like recepto 99.9 5.3E-28 1.8E-32 272.5 11.4 134 373-521 31-167 (606)
10 4ecn_A Leucine-rich repeat pro 99.9 1.3E-27 4.4E-32 272.4 13.8 338 388-758 439-818 (876)
11 3rgz_A Protein brassinosteroid 99.9 3E-27 1E-31 272.2 12.4 342 372-758 198-550 (768)
12 3t6q_A CD180 antigen; protein- 99.9 1E-26 3.4E-31 262.1 14.0 354 373-757 32-460 (606)
13 2z81_A CD282 antigen, TOLL-lik 99.9 1.1E-26 3.7E-31 258.6 12.1 355 374-758 26-509 (549)
14 2z7x_B TOLL-like receptor 1, v 99.9 4.3E-26 1.5E-30 251.7 15.3 125 374-519 21-150 (520)
15 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-25 3.6E-30 253.7 18.7 163 378-557 15-180 (606)
16 3t6q_A CD180 antigen; protein- 99.9 1.3E-25 4.6E-30 252.9 19.2 360 373-757 56-511 (606)
17 3v47_A TOLL-like receptor 5B a 99.9 3.4E-26 1.2E-30 248.1 13.1 356 373-758 29-407 (455)
18 2z63_A TOLL-like receptor 4, v 99.9 1.3E-25 4.4E-30 251.3 16.5 176 373-563 27-209 (570)
19 2z63_A TOLL-like receptor 4, v 99.9 4.2E-26 1.4E-30 255.3 9.8 368 372-758 50-530 (570)
20 3j0a_A TOLL-like receptor 5; m 99.9 8.3E-25 2.9E-29 254.5 18.0 157 372-542 22-185 (844)
21 4fmz_A Internalin; leucine ric 99.9 7.7E-25 2.6E-29 228.2 15.7 299 373-758 43-345 (347)
22 2id5_A Lingo-1, leucine rich r 99.9 4.8E-25 1.7E-29 240.4 14.3 309 378-733 15-331 (477)
23 1o6v_A Internalin A; bacterial 99.9 1.6E-24 5.6E-29 234.9 18.4 317 374-757 68-386 (466)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.4E-25 2.2E-29 244.3 15.2 75 680-758 429-509 (562)
25 2z81_A CD282 antigen, TOLL-lik 99.9 3.6E-24 1.2E-28 238.2 19.5 351 379-758 10-485 (549)
26 3o6n_A APL1; leucine-rich repe 99.9 1.2E-24 4.2E-29 230.4 14.0 303 395-757 43-350 (390)
27 1ziw_A TOLL-like receptor 3; i 99.9 2E-24 6.9E-29 246.6 15.6 156 373-544 24-184 (680)
28 3oja_B Anopheles plasmodium-re 99.9 1.3E-24 4.5E-29 242.9 13.0 303 395-757 49-356 (597)
29 1ziw_A TOLL-like receptor 3; i 99.9 1.4E-24 4.8E-29 248.0 12.9 349 377-757 7-441 (680)
30 3v47_A TOLL-like receptor 5B a 99.9 4.3E-24 1.5E-28 231.6 14.3 343 378-758 14-383 (455)
31 3j0a_A TOLL-like receptor 5; m 99.9 6.3E-23 2.2E-27 238.7 23.0 108 483-600 266-374 (844)
32 3o6n_A APL1; leucine-rich repe 99.9 2.8E-24 9.5E-29 227.6 10.6 305 373-735 44-352 (390)
33 3bz5_A Internalin-J, INLJ; leu 99.9 5E-23 1.7E-27 220.9 18.8 293 374-757 42-350 (457)
34 3oja_B Anopheles plasmodium-re 99.9 9.8E-24 3.4E-28 235.8 9.5 305 373-735 50-358 (597)
35 1o6v_A Internalin A; bacterial 99.9 2.4E-22 8.4E-27 217.8 18.7 319 373-758 45-365 (466)
36 2z7x_B TOLL-like receptor 1, v 99.9 1.6E-22 5.4E-27 223.2 16.7 338 377-758 3-480 (520)
37 4fmz_A Internalin; leucine ric 99.9 1.5E-22 5.2E-27 210.8 15.6 283 392-758 39-323 (347)
38 2id5_A Lingo-1, leucine rich r 99.9 5.2E-23 1.8E-27 224.3 12.5 298 373-716 31-334 (477)
39 2ft3_A Biglycan; proteoglycan, 99.9 3.7E-22 1.3E-26 206.1 16.5 284 375-758 34-332 (332)
40 1jl5_A Outer protein YOPM; leu 99.9 9.7E-23 3.3E-27 218.5 12.1 336 373-758 10-408 (454)
41 4g8a_A TOLL-like receptor 4; l 99.9 3.3E-23 1.1E-27 235.3 7.7 143 373-531 51-197 (635)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.1E-22 1.4E-26 221.6 16.0 328 374-736 52-511 (562)
43 4fcg_A Uncharacterized protein 99.9 7.9E-22 2.7E-26 202.4 15.5 228 425-756 79-311 (328)
44 1xku_A Decorin; proteoglycan, 99.9 6.9E-22 2.3E-26 204.0 14.3 283 375-757 32-330 (330)
45 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-21 5.8E-26 209.1 15.2 273 392-757 37-329 (457)
46 1ogq_A PGIP-2, polygalacturona 99.9 7.1E-22 2.4E-26 201.6 10.0 58 680-737 245-306 (313)
47 1ogq_A PGIP-2, polygalacturona 99.8 3.6E-21 1.2E-25 196.3 11.6 222 374-660 50-279 (313)
48 1jl5_A Outer protein YOPM; leu 99.8 1.1E-20 3.9E-25 202.4 13.2 301 395-758 9-369 (454)
49 4g8a_A TOLL-like receptor 4; l 99.8 2.1E-20 7.2E-25 212.1 13.3 143 383-544 40-186 (635)
50 3g06_A SSPH2 (leucine-rich rep 99.8 1.5E-19 5E-24 199.6 19.2 256 428-758 41-296 (622)
51 4fcg_A Uncharacterized protein 99.8 1E-20 3.5E-25 194.1 9.1 128 424-562 101-237 (328)
52 1z7x_W Ribonuclease inhibitor; 99.8 1.2E-22 4.1E-27 220.7 -6.6 361 373-758 2-410 (461)
53 2ft3_A Biglycan; proteoglycan, 99.8 6.3E-20 2.1E-24 189.4 11.7 262 428-759 34-307 (332)
54 3ogk_B Coronatine-insensitive 99.8 2.1E-21 7.3E-26 218.0 0.1 370 375-757 113-524 (592)
55 2z80_A TOLL-like receptor 2, v 99.8 7.3E-20 2.5E-24 190.7 9.5 174 427-660 52-233 (353)
56 3zyj_A Leucine-rich repeat-con 99.8 6.3E-19 2.1E-23 189.4 16.1 231 447-757 53-290 (440)
57 3zyi_A Leucine-rich repeat-con 99.8 5.4E-19 1.9E-23 190.6 15.6 229 448-757 65-301 (452)
58 2z66_A Variable lymphocyte rec 99.8 2.5E-19 8.6E-24 182.7 12.1 146 378-539 11-158 (306)
59 1xku_A Decorin; proteoglycan, 99.8 2.5E-19 8.6E-24 184.8 12.0 263 425-758 29-305 (330)
60 2z80_A TOLL-like receptor 2, v 99.8 4.6E-19 1.6E-23 184.6 11.0 268 379-693 36-315 (353)
61 3g06_A SSPH2 (leucine-rich rep 99.8 2.8E-18 9.6E-23 189.3 17.1 259 375-717 41-299 (622)
62 1z7x_W Ribonuclease inhibitor; 99.8 2.7E-21 9.2E-26 210.0 -7.8 336 396-758 2-382 (461)
63 3ogk_B Coronatine-insensitive 99.8 3.5E-20 1.2E-24 208.1 0.7 326 395-757 110-499 (592)
64 3o53_A Protein LRIM1, AGAP0063 99.7 9.1E-20 3.1E-24 186.5 -0.4 197 420-660 27-225 (317)
65 2p1m_B Transport inhibitor res 99.7 3.6E-20 1.2E-24 208.2 -4.0 370 374-758 105-518 (594)
66 3zyi_A Leucine-rich repeat-con 99.7 2.1E-18 7.2E-23 186.0 9.1 242 377-660 57-301 (452)
67 3zyj_A Leucine-rich repeat-con 99.7 2E-18 6.7E-23 185.5 8.8 241 378-660 47-290 (440)
68 1wwl_A Monocyte differentiatio 99.7 2.6E-18 8.7E-23 175.3 4.3 105 624-735 199-309 (312)
69 1ozn_A Reticulon 4 receptor; N 99.7 3.3E-17 1.1E-21 165.0 12.3 219 377-660 14-236 (285)
70 2z66_A Variable lymphocyte rec 99.7 1.5E-17 5.1E-22 169.5 9.3 178 373-564 27-209 (306)
71 3oja_A Leucine-rich immune mol 99.7 2.3E-18 8E-23 186.4 3.4 231 427-730 34-270 (487)
72 1ozn_A Reticulon 4 receptor; N 99.7 5.2E-17 1.8E-21 163.6 13.0 94 446-541 20-115 (285)
73 1wwl_A Monocyte differentiatio 99.7 3.9E-18 1.3E-22 174.0 4.8 107 646-758 198-308 (312)
74 3o53_A Protein LRIM1, AGAP0063 99.7 3.6E-18 1.2E-22 174.6 1.9 216 394-660 31-248 (317)
75 3oja_A Leucine-rich immune mol 99.7 5.4E-18 1.9E-22 183.5 1.7 235 396-711 33-271 (487)
76 2z62_A TOLL-like receptor 4, v 99.6 6E-16 2.1E-20 154.9 11.9 82 460-541 28-110 (276)
77 1w5s_A Origin recognition comp 99.6 8.5E-15 2.9E-19 156.1 20.7 304 7-328 18-372 (412)
78 3rfs_A Internalin B, repeat mo 99.6 5.7E-16 1.9E-20 154.4 9.8 47 698-747 201-247 (272)
79 2ca6_A RAN GTPase-activating p 99.6 3.3E-17 1.1E-21 172.9 -1.1 93 621-738 211-319 (386)
80 2p1m_B Transport inhibitor res 99.6 1.5E-17 5E-22 186.9 -4.1 348 374-756 156-541 (594)
81 1p9a_G Platelet glycoprotein I 99.6 2.2E-15 7.4E-20 151.3 12.1 150 374-542 10-159 (290)
82 1p9a_G Platelet glycoprotein I 99.6 5.8E-15 2E-19 148.2 14.9 80 424-517 7-87 (290)
83 2ca6_A RAN GTPase-activating p 99.6 8.7E-17 3E-21 169.6 1.6 260 383-660 18-314 (386)
84 2z62_A TOLL-like receptor 4, v 99.6 3.7E-16 1.3E-20 156.4 5.9 175 374-563 28-209 (276)
85 4glp_A Monocyte differentiatio 99.6 2.6E-15 8.8E-20 152.9 11.3 113 396-520 63-182 (310)
86 2xwt_C Thyrotropin receptor; s 99.6 1.1E-15 3.6E-20 149.4 7.3 160 383-563 20-188 (239)
87 2o6q_A Variable lymphocyte rec 99.6 4.4E-15 1.5E-19 147.9 11.0 196 377-600 19-217 (270)
88 2ast_B S-phase kinase-associat 99.6 4.1E-16 1.4E-20 161.3 3.5 239 423-743 64-314 (336)
89 4ay9_X Follicle-stimulating ho 99.6 5.6E-15 1.9E-19 153.1 12.1 230 446-731 18-255 (350)
90 2o6q_A Variable lymphocyte rec 99.6 2.8E-15 9.5E-20 149.3 9.3 174 374-564 37-215 (270)
91 2xwt_C Thyrotropin receptor; s 99.6 1.2E-15 4E-20 149.1 5.7 95 448-546 22-120 (239)
92 2qen_A Walker-type ATPase; unk 99.6 2.3E-14 7.7E-19 149.2 15.4 298 5-348 6-348 (350)
93 1h6u_A Internalin H; cell adhe 99.6 1.1E-14 3.6E-19 147.9 12.1 164 374-563 41-204 (308)
94 3m19_A Variable lymphocyte rec 99.6 8.4E-15 2.9E-19 144.1 10.0 171 376-564 16-189 (251)
95 4glp_A Monocyte differentiatio 99.5 5.8E-15 2E-19 150.3 8.9 110 427-542 64-180 (310)
96 1h6u_A Internalin H; cell adhe 99.5 7.6E-15 2.6E-19 148.9 9.7 146 392-562 36-181 (308)
97 3goz_A Leucine-rich repeat-con 99.5 1.9E-16 6.7E-21 165.1 -2.3 249 419-737 14-299 (362)
98 3rfs_A Internalin B, repeat mo 99.5 2.3E-14 7.8E-19 142.8 12.6 174 373-564 40-215 (272)
99 2fna_A Conserved hypothetical 99.5 1.4E-13 5E-18 143.5 18.4 296 5-348 7-356 (357)
100 2ast_B S-phase kinase-associat 99.5 1.2E-15 4.2E-20 157.7 2.3 154 375-542 71-233 (336)
101 4ay9_X Follicle-stimulating ho 99.5 2E-14 6.8E-19 149.0 9.7 236 378-679 13-254 (350)
102 2v1u_A Cell division control p 99.5 3.2E-13 1.1E-17 142.6 19.1 301 7-328 15-352 (387)
103 3goz_A Leucine-rich repeat-con 99.5 4.3E-15 1.5E-19 154.9 3.2 254 381-660 5-295 (362)
104 4ezg_A Putative uncharacterize 99.5 1E-13 3.4E-18 130.6 11.7 149 374-543 44-193 (197)
105 3m19_A Variable lymphocyte rec 99.5 6.1E-14 2.1E-18 137.9 9.7 158 373-546 34-194 (251)
106 1fnn_A CDC6P, cell division co 99.5 2.8E-12 9.7E-17 135.3 22.4 301 8-329 14-353 (389)
107 2v9t_B SLIT homolog 2 protein 99.5 5.1E-14 1.8E-18 135.0 7.9 150 378-544 15-165 (220)
108 1h6t_A Internalin B; cell adhe 99.5 1.5E-13 5.2E-18 138.0 10.5 163 374-562 46-208 (291)
109 4ezg_A Putative uncharacterize 99.4 5.8E-14 2E-18 132.3 6.1 149 394-563 41-190 (197)
110 2qby_B CDC6 homolog 3, cell di 99.4 9.9E-13 3.4E-17 138.5 16.2 294 10-329 19-341 (384)
111 2v70_A SLIT-2, SLIT homolog 2 99.4 1.7E-13 5.8E-18 131.3 9.0 151 378-544 15-166 (220)
112 3cvr_A Invasion plasmid antige 99.4 3.2E-13 1.1E-17 147.1 12.1 186 428-717 60-245 (571)
113 3e6j_A Variable lymphocyte rec 99.4 2.3E-13 8E-18 131.4 9.1 148 378-544 23-172 (229)
114 1njg_A DNA polymerase III subu 99.4 5.6E-12 1.9E-16 123.8 18.3 200 8-224 20-231 (250)
115 3cvr_A Invasion plasmid antige 99.4 9.6E-13 3.3E-17 143.3 12.9 183 375-661 60-242 (571)
116 1m9s_A Internalin B; cell inva 99.4 4.6E-13 1.6E-17 147.6 10.4 164 375-564 44-207 (605)
117 1h6t_A Internalin B; cell adhe 99.4 7.4E-13 2.5E-17 133.0 10.4 148 392-564 41-188 (291)
118 2qby_A CDC6 homolog 1, cell di 99.4 1.8E-12 6.1E-17 136.8 13.5 302 6-328 15-349 (386)
119 2chg_A Replication factor C sm 99.4 6E-12 2.1E-16 121.6 16.1 188 6-220 12-203 (226)
120 4b8c_D Glucose-repressible alc 99.4 9.6E-13 3.3E-17 149.1 11.6 158 373-544 172-329 (727)
121 2o6s_A Variable lymphocyte rec 99.4 9.4E-13 3.2E-17 125.3 9.3 147 378-542 11-159 (208)
122 2o6s_A Variable lymphocyte rec 99.3 1.1E-12 3.8E-17 124.7 8.0 156 373-551 27-186 (208)
123 2ell_A Acidic leucine-rich nuc 99.3 2.1E-12 7.2E-17 118.1 9.0 86 456-543 67-159 (168)
124 3e6j_A Variable lymphocyte rec 99.3 2.4E-12 8.1E-17 124.3 9.4 133 373-522 39-174 (229)
125 1m9s_A Internalin B; cell inva 99.3 1.6E-12 5.4E-17 143.4 8.5 59 456-517 83-141 (605)
126 2ell_A Acidic leucine-rich nuc 99.3 5.2E-12 1.8E-16 115.5 10.3 133 373-524 23-163 (168)
127 1xeu_A Internalin C; cellular 99.3 4.9E-12 1.7E-16 124.7 10.8 147 374-546 41-187 (263)
128 1xeu_A Internalin C; cellular 99.3 1.3E-12 4.6E-17 128.8 6.6 155 382-563 27-181 (263)
129 1dce_A Protein (RAB geranylger 99.3 3.9E-14 1.3E-18 155.3 -5.6 181 374-564 349-543 (567)
130 2je0_A Acidic leucine-rich nuc 99.3 8.7E-13 3E-17 118.0 4.0 128 395-539 15-148 (149)
131 2xot_A Amphoterin-induced prot 99.3 1.4E-12 4.6E-17 135.7 6.0 168 378-563 22-198 (361)
132 2v70_A SLIT-2, SLIT homolog 2 99.3 3.8E-12 1.3E-16 121.9 7.9 135 373-522 31-168 (220)
133 2je0_A Acidic leucine-rich nuc 99.3 3.2E-12 1.1E-16 114.3 6.8 126 373-516 16-149 (149)
134 1dce_A Protein (RAB geranylger 99.3 1.1E-13 3.8E-18 151.7 -5.1 38 457-494 346-383 (567)
135 2v9t_B SLIT homolog 2 protein 99.3 9.2E-12 3.2E-16 119.2 8.5 127 427-564 32-162 (220)
136 1w8a_A SLIT protein; signaling 99.2 2.2E-11 7.4E-16 113.9 9.5 128 377-520 11-139 (192)
137 2xot_A Amphoterin-induced prot 99.2 3.5E-12 1.2E-16 132.6 4.3 155 373-544 38-202 (361)
138 1a9n_A U2A', U2A'; complex (nu 99.2 1.2E-11 4.1E-16 113.9 6.5 131 392-542 14-151 (176)
139 1sxj_B Activator 1 37 kDa subu 99.2 1.4E-10 4.9E-15 118.7 14.7 189 7-222 17-211 (323)
140 2wfh_A SLIT homolog 2 protein 99.2 5.3E-11 1.8E-15 111.1 9.1 92 451-542 45-137 (193)
141 1w8a_A SLIT protein; signaling 99.2 4.4E-11 1.5E-15 111.7 8.0 125 400-543 11-138 (192)
142 1a9n_A U2A', U2A'; complex (nu 99.2 1.5E-11 5.1E-16 113.3 4.6 127 423-563 15-149 (176)
143 3te6_A Regulatory protein SIR3 99.2 4.7E-10 1.6E-14 111.3 15.2 170 13-189 22-213 (318)
144 1ds9_A Outer arm dynein; leuci 99.1 3.1E-13 1.1E-17 127.4 -8.2 82 423-517 44-125 (198)
145 2wfh_A SLIT homolog 2 protein 99.1 1.1E-10 3.9E-15 108.8 9.3 125 377-520 13-139 (193)
146 2o6r_A Variable lymphocyte rec 99.1 8.5E-11 2.9E-15 108.4 8.0 124 378-520 11-137 (177)
147 4b8c_D Glucose-repressible alc 99.1 4.1E-11 1.4E-15 135.7 6.8 155 397-565 173-327 (727)
148 1ds9_A Outer arm dynein; leuci 99.1 2.5E-12 8.5E-17 121.1 -3.4 143 375-537 24-180 (198)
149 1iqp_A RFCS; clamp loader, ext 99.1 5E-10 1.7E-14 114.9 12.1 186 6-221 20-212 (327)
150 1jr3_A DNA polymerase III subu 99.0 4.4E-09 1.5E-13 109.9 16.5 199 7-221 12-221 (373)
151 3sb4_A Hypothetical leucine ri 99.0 2.2E-09 7.4E-14 109.9 13.0 121 395-537 23-154 (329)
152 2chq_A Replication factor C sm 99.0 3.1E-09 1.1E-13 108.4 13.0 185 6-220 12-203 (319)
153 2o6r_A Variable lymphocyte rec 98.9 1.6E-09 5.5E-14 99.7 8.7 105 427-542 28-135 (177)
154 1hqc_A RUVB; extended AAA-ATPa 98.9 4.9E-09 1.7E-13 107.2 12.5 188 5-224 6-214 (324)
155 3g39_A Variable lymphocyte rec 98.9 1.1E-09 3.7E-14 99.8 6.4 93 449-544 21-115 (170)
156 2r9u_A Variable lymphocyte rec 98.9 1.3E-09 4.6E-14 99.5 6.4 90 451-544 26-118 (174)
157 3sb4_A Hypothetical leucine ri 98.9 2E-09 6.8E-14 110.2 7.6 287 425-753 23-328 (329)
158 3bos_A Putative DNA replicatio 98.9 7.6E-09 2.6E-13 100.8 11.4 177 8-221 25-217 (242)
159 1jbk_A CLPB protein; beta barr 98.9 9.3E-09 3.2E-13 96.2 11.2 153 7-183 18-194 (195)
160 1sxj_D Activator 1 41 kDa subu 98.9 3.4E-08 1.1E-12 102.3 16.4 198 6-220 32-234 (353)
161 2r9u_A Variable lymphocyte rec 98.9 1.9E-09 6.5E-14 98.5 5.6 83 427-519 33-117 (174)
162 3pvs_A Replication-associated 98.8 3.7E-08 1.3E-12 103.8 14.6 182 6-220 21-214 (447)
163 3pfi_A Holliday junction ATP-d 98.8 8.7E-08 3E-12 98.4 14.8 183 6-221 24-227 (338)
164 1sxj_E Activator 1 40 kDa subu 98.7 4.7E-08 1.6E-12 101.2 12.3 197 6-220 9-236 (354)
165 1sxj_A Activator 1 95 kDa subu 98.7 1.3E-07 4.6E-12 102.3 14.7 201 7-221 35-253 (516)
166 3h4m_A Proteasome-activating n 98.7 9.2E-08 3.1E-12 95.6 12.4 190 5-220 11-230 (285)
167 2qz4_A Paraplegin; AAA+, SPG7, 98.7 6.3E-07 2.2E-11 88.2 18.0 192 6-220 1-221 (262)
168 2z4s_A Chromosomal replication 98.7 1.8E-07 6.3E-12 98.8 14.8 181 38-239 130-331 (440)
169 3g39_A Variable lymphocyte rec 98.7 2.1E-08 7E-13 91.3 6.4 102 461-564 10-112 (170)
170 1a5t_A Delta prime, HOLB; zinc 98.7 4.3E-07 1.5E-11 92.5 16.9 169 17-220 8-204 (334)
171 3uk6_A RUVB-like 2; hexameric 98.7 1.4E-07 4.8E-12 98.2 13.1 199 10-220 43-302 (368)
172 1l8q_A Chromosomal replication 98.6 3.4E-07 1.1E-11 93.2 14.6 185 5-217 5-204 (324)
173 3u61_B DNA polymerase accessor 98.6 2.7E-07 9.2E-12 94.0 13.9 178 7-217 22-212 (324)
174 3un9_A NLR family member X1; l 98.6 5.1E-09 1.7E-13 108.3 -0.3 159 375-543 73-251 (372)
175 4fdw_A Leucine rich hypothetic 98.6 1.7E-07 5.7E-12 98.0 11.0 35 697-732 341-380 (401)
176 1d2n_A N-ethylmaleimide-sensit 98.6 9.3E-07 3.2E-11 87.4 15.6 172 11-213 33-229 (272)
177 3eie_A Vacuolar protein sortin 98.6 9.9E-07 3.4E-11 89.4 15.5 193 5-222 12-229 (322)
178 3n70_A Transport activator; si 98.5 8.2E-08 2.8E-12 84.5 6.5 114 12-156 2-115 (145)
179 1sxj_C Activator 1 40 kDa subu 98.5 5.2E-07 1.8E-11 92.5 13.2 180 7-216 21-207 (340)
180 1xwi_A SKD1 protein; VPS4B, AA 98.5 3.9E-06 1.3E-10 84.7 18.9 192 5-222 6-224 (322)
181 2ifg_A High affinity nerve gro 98.5 8.5E-08 2.9E-12 99.0 6.8 86 423-519 27-115 (347)
182 4fs7_A Uncharacterized protein 98.5 4.1E-07 1.4E-11 95.5 11.7 61 391-469 65-126 (394)
183 2p65_A Hypothetical protein PF 98.5 2.5E-07 8.6E-12 85.7 8.8 46 9-60 20-65 (187)
184 2qp9_X Vacuolar protein sortin 98.5 2.4E-06 8.1E-11 87.6 16.7 191 5-222 45-262 (355)
185 4b4t_J 26S protease regulatory 98.5 8E-06 2.7E-10 83.0 19.4 209 6-240 143-389 (405)
186 4fdw_A Leucine rich hypothetic 98.5 2.5E-06 8.6E-11 89.0 16.2 59 697-756 318-380 (401)
187 2ifg_A High affinity nerve gro 98.5 1.3E-07 4.3E-12 97.7 6.3 103 378-496 12-116 (347)
188 2gno_A DNA polymerase III, gam 98.5 1.3E-06 4.5E-11 86.9 13.0 149 15-187 1-152 (305)
189 3cf0_A Transitional endoplasmi 98.4 2.9E-06 9.9E-11 85.0 15.3 187 5-216 9-223 (301)
190 3syl_A Protein CBBX; photosynt 98.4 2.4E-06 8.3E-11 86.3 14.2 158 12-189 32-219 (309)
191 3b9p_A CG5977-PA, isoform A; A 98.4 6.4E-06 2.2E-10 82.6 17.1 190 5-221 15-233 (297)
192 3d8b_A Fidgetin-like protein 1 98.4 2.9E-06 1E-10 87.2 14.1 192 6-222 79-296 (357)
193 3un9_A NLR family member X1; l 98.4 9.1E-08 3.1E-12 98.9 2.6 142 374-522 101-254 (372)
194 1qvr_A CLPB protein; coiled co 98.4 1E-06 3.6E-11 101.6 11.1 155 9-187 168-345 (854)
195 4fs7_A Uncharacterized protein 98.3 2.6E-06 9E-11 89.3 12.9 60 421-492 65-126 (394)
196 3vfd_A Spastin; ATPase, microt 98.3 1.2E-05 4.2E-10 83.7 17.5 192 6-221 110-326 (389)
197 2zan_A Vacuolar protein sortin 98.3 1.2E-05 4.2E-10 84.9 17.3 195 5-222 128-346 (444)
198 4b4t_L 26S protease subunit RP 98.3 1.1E-05 3.7E-10 83.6 16.0 184 5-214 175-387 (437)
199 3ec2_A DNA replication protein 98.3 1.5E-06 5.2E-11 79.8 8.6 126 10-156 9-142 (180)
200 1io0_A Tropomodulin; LRR prote 98.3 2.5E-07 8.6E-12 85.2 3.2 120 392-518 31-162 (185)
201 3pxg_A Negative regulator of g 98.3 2.2E-06 7.7E-11 91.3 10.5 146 10-187 179-338 (468)
202 1lv7_A FTSH; alpha/beta domain 98.2 1E-05 3.5E-10 79.1 13.5 191 5-220 6-224 (257)
203 3co5_A Putative two-component 98.2 6.4E-07 2.2E-11 78.5 4.3 111 11-156 4-115 (143)
204 4b4t_H 26S protease regulatory 98.2 1.1E-05 3.7E-10 83.1 13.9 183 6-214 204-415 (467)
205 1io0_A Tropomodulin; LRR prote 98.2 2.9E-07 1E-11 84.8 2.1 121 417-542 26-162 (185)
206 3hu3_A Transitional endoplasmi 98.2 8.7E-06 3E-10 86.6 13.2 188 8-220 201-414 (489)
207 4fcw_A Chaperone protein CLPB; 98.2 8.3E-06 2.8E-10 82.4 12.4 124 11-143 17-145 (311)
208 1ofh_A ATP-dependent HSL prote 98.2 1.8E-05 6.2E-10 79.9 14.7 155 11-185 15-213 (310)
209 1ojl_A Transcriptional regulat 98.2 8.8E-06 3E-10 81.3 11.9 160 11-185 2-188 (304)
210 2bjv_A PSP operon transcriptio 98.2 2.9E-06 9.9E-11 83.5 8.3 161 10-184 5-191 (265)
211 4b4t_M 26S protease regulatory 98.2 6.1E-06 2.1E-10 85.3 10.9 184 5-214 175-387 (434)
212 2w58_A DNAI, primosome compone 98.2 6.6E-06 2.3E-10 77.1 9.8 129 8-156 22-158 (202)
213 4b4t_I 26S protease regulatory 98.2 2.7E-05 9.2E-10 79.4 14.6 183 6-214 177-388 (437)
214 4b4t_K 26S protease regulatory 98.2 1.6E-05 5.5E-10 82.1 13.3 183 6-214 167-379 (428)
215 4gt6_A Cell surface protein; l 98.1 2.5E-05 8.5E-10 81.8 14.7 109 392-517 58-170 (394)
216 2ra8_A Uncharacterized protein 98.1 5.3E-07 1.8E-11 92.3 1.7 138 391-541 133-289 (362)
217 2ce7_A Cell division protein F 98.1 5.4E-05 1.9E-09 79.7 16.2 185 5-214 10-221 (476)
218 1r6b_X CLPA protein; AAA+, N-t 98.1 1.2E-05 4.2E-10 91.8 12.2 156 10-187 185-362 (758)
219 2c9o_A RUVB-like 1; hexameric 98.1 1.2E-05 3.9E-10 85.7 10.6 97 119-220 297-409 (456)
220 3e4g_A ATP synthase subunit S, 98.0 1.8E-06 6.3E-11 77.0 2.8 63 698-760 81-153 (176)
221 1in4_A RUVB, holliday junction 98.0 6.6E-05 2.2E-09 76.3 14.1 181 7-220 21-222 (334)
222 3pxi_A Negative regulator of g 98.0 1.6E-05 5.4E-10 90.8 10.5 148 10-187 179-338 (758)
223 2r62_A Cell division protease 98.0 3.3E-06 1.1E-10 83.3 4.1 164 5-188 5-197 (268)
224 2ra8_A Uncharacterized protein 98.0 1.6E-05 5.5E-10 81.3 9.2 137 373-520 171-320 (362)
225 3rw6_A Nuclear RNA export fact 98.0 8.7E-06 3E-10 78.7 6.6 82 424-513 167-257 (267)
226 2kjq_A DNAA-related protein; s 98.0 5.9E-06 2E-10 72.6 4.8 87 38-156 36-124 (149)
227 3cf2_A TER ATPase, transitiona 98.0 0.0001 3.5E-09 82.3 15.7 184 5-214 198-407 (806)
228 3pxi_A Negative regulator of g 97.9 1.9E-05 6.6E-10 90.0 8.6 156 11-187 491-675 (758)
229 3t15_A Ribulose bisphosphate c 97.8 9.2E-05 3.1E-09 73.5 11.8 25 36-60 34-58 (293)
230 4gt6_A Cell surface protein; l 97.8 2.9E-05 9.8E-10 81.3 8.3 142 376-536 66-210 (394)
231 3e4g_A ATP synthase subunit S, 97.8 1.1E-05 3.8E-10 71.9 3.7 91 397-497 61-153 (176)
232 2r44_A Uncharacterized protein 97.7 7.4E-05 2.5E-09 76.0 8.9 151 11-188 27-199 (331)
233 3m6a_A ATP-dependent protease 97.7 0.00013 4.5E-09 79.1 10.7 160 13-187 83-266 (543)
234 2dhr_A FTSH; AAA+ protein, hex 97.6 0.00082 2.8E-08 71.2 15.8 180 6-214 26-236 (499)
235 2qgz_A Helicase loader, putati 97.6 8.5E-05 2.9E-09 74.2 7.8 62 10-76 123-189 (308)
236 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00012 4E-09 83.8 9.5 166 11-187 458-666 (758)
237 1qvr_A CLPB protein; coiled co 97.6 0.00011 3.6E-09 84.9 9.0 122 12-143 559-686 (854)
238 3rw6_A Nuclear RNA export fact 97.6 4.5E-05 1.5E-09 73.6 4.7 79 457-537 167-257 (267)
239 2x8a_A Nuclear valosin-contain 97.6 0.00071 2.4E-08 66.2 13.2 163 4-187 3-191 (274)
240 2b8t_A Thymidine kinase; deoxy 97.5 0.00012 4.2E-09 68.4 5.8 114 37-158 11-127 (223)
241 1ixz_A ATP-dependent metallopr 97.4 0.0016 5.3E-08 63.2 13.9 185 5-214 10-221 (254)
242 1ypw_A Transitional endoplasmi 97.4 0.00064 2.2E-08 77.3 12.3 162 6-188 199-386 (806)
243 1iy2_A ATP-dependent metallopr 97.4 0.0033 1.1E-07 61.8 15.6 184 6-214 35-245 (278)
244 3nbx_X ATPase RAVA; AAA+ ATPas 97.4 0.00036 1.2E-08 74.1 9.0 153 11-187 22-196 (500)
245 1um8_A ATP-dependent CLP prote 97.4 0.00081 2.8E-08 69.6 11.5 49 12-60 22-94 (376)
246 1g8p_A Magnesium-chelatase 38 97.4 0.00045 1.5E-08 70.9 9.1 49 6-60 19-67 (350)
247 3cf2_A TER ATPase, transitiona 97.3 0.00055 1.9E-08 76.5 9.9 163 5-187 471-661 (806)
248 1g5t_A COB(I)alamin adenosyltr 97.2 0.00029 9.9E-09 63.7 5.0 118 38-157 28-163 (196)
249 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.0002 6.7E-09 70.2 4.0 69 38-128 123-193 (331)
250 2cvh_A DNA repair and recombin 97.2 0.002 6.9E-08 60.8 11.0 85 37-127 19-115 (220)
251 4h09_A Hypothetical leucine ri 97.2 0.0015 5.2E-08 67.7 10.9 15 392-406 64-78 (379)
252 1jr3_D DNA polymerase III, del 97.1 0.0062 2.1E-07 62.0 14.5 155 38-219 18-183 (343)
253 4h09_A Hypothetical leucine ri 97.0 0.00062 2.1E-08 70.7 6.2 81 392-492 41-122 (379)
254 3hr8_A Protein RECA; alpha and 96.9 0.0026 8.9E-08 64.1 8.7 98 20-127 46-149 (356)
255 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.0049 1.7E-07 58.7 10.2 115 38-157 23-168 (235)
256 3io5_A Recombination and repai 96.8 0.0056 1.9E-07 59.6 10.2 82 39-127 29-121 (333)
257 2orw_A Thymidine kinase; TMTK, 96.8 0.00034 1.2E-08 63.7 1.4 108 39-157 4-113 (184)
258 1xp8_A RECA protein, recombina 96.8 0.0041 1.4E-07 63.1 9.4 84 37-127 73-162 (366)
259 2zr9_A Protein RECA, recombina 96.8 0.0037 1.3E-07 63.2 9.0 84 37-127 60-149 (349)
260 1u94_A RECA protein, recombina 96.6 0.0031 1E-07 63.9 7.1 83 37-126 62-150 (356)
261 1pgv_A TMD-1, tropomodulin TMD 96.6 0.00096 3.3E-08 60.6 3.0 117 394-517 38-167 (197)
262 1v5w_A DMC1, meiotic recombina 96.5 0.012 4.1E-07 59.6 10.9 52 36-87 120-175 (343)
263 2z43_A DNA repair and recombin 96.4 0.0048 1.6E-07 62.1 7.3 57 37-94 106-166 (324)
264 1rz3_A Hypothetical protein rb 96.4 0.0049 1.7E-07 57.1 6.8 42 16-60 3-44 (201)
265 2i1q_A DNA repair and recombin 96.3 0.0065 2.2E-07 61.1 7.6 57 37-94 97-167 (322)
266 1n0w_A DNA repair protein RAD5 96.3 0.0067 2.3E-07 58.2 7.3 49 37-85 23-75 (243)
267 1cr0_A DNA primase/helicase; R 96.1 0.018 6.1E-07 57.1 9.6 38 38-77 35-73 (296)
268 3upu_A ATP-dependent DNA helic 96.0 0.006 2.1E-07 64.8 5.7 22 39-60 46-67 (459)
269 1mv5_A LMRA, multidrug resista 96.0 0.029 9.8E-07 53.5 9.9 24 37-60 27-50 (243)
270 3dm5_A SRP54, signal recogniti 96.0 0.058 2E-06 55.8 12.7 38 37-76 99-136 (443)
271 4a1f_A DNAB helicase, replicat 96.0 0.034 1.1E-06 55.5 10.4 72 13-93 26-97 (338)
272 1pgv_A TMD-1, tropomodulin TMD 95.9 0.0055 1.9E-07 55.6 4.3 96 417-517 31-136 (197)
273 3hws_A ATP-dependent CLP prote 95.9 0.0042 1.4E-07 63.8 4.0 49 12-60 16-73 (363)
274 2px0_A Flagellar biosynthesis 95.9 0.019 6.5E-07 56.5 8.5 86 37-126 104-191 (296)
275 2ff7_A Alpha-hemolysin translo 95.9 0.017 5.9E-07 55.2 8.0 23 38-60 35-57 (247)
276 1qhx_A CPT, protein (chloramph 95.9 0.003 1E-07 57.3 2.5 22 39-60 4-25 (178)
277 3bh0_A DNAB-like replicative h 95.9 0.061 2.1E-06 53.6 12.1 52 37-92 67-118 (315)
278 1vma_A Cell division protein F 95.9 0.018 6.2E-07 56.8 8.0 88 36-126 102-195 (306)
279 3tqc_A Pantothenate kinase; bi 95.8 0.026 8.8E-07 56.0 8.8 44 15-60 71-114 (321)
280 1ex7_A Guanylate kinase; subst 95.7 0.0026 8.9E-08 57.6 1.3 22 39-60 2-23 (186)
281 1odf_A YGR205W, hypothetical 3 95.7 0.048 1.6E-06 53.4 10.2 53 35-89 28-83 (290)
282 2yvu_A Probable adenylyl-sulfa 95.7 0.012 4.2E-07 53.6 5.6 24 37-60 12-35 (186)
283 1zp6_A Hypothetical protein AT 95.7 0.0068 2.3E-07 55.6 3.8 24 37-60 8-31 (191)
284 1ly1_A Polynucleotide kinase; 95.7 0.0056 1.9E-07 55.6 3.2 23 38-60 2-24 (181)
285 3jvv_A Twitching mobility prot 95.6 0.034 1.2E-06 56.2 9.0 112 38-160 123-234 (356)
286 3uie_A Adenylyl-sulfate kinase 95.6 0.012 4.2E-07 54.4 5.3 24 37-60 24-47 (200)
287 1gvn_B Zeta; postsegregational 95.6 0.011 3.7E-07 58.1 5.1 26 35-60 30-55 (287)
288 3kl4_A SRP54, signal recogniti 95.5 0.046 1.6E-06 56.5 9.8 39 37-77 96-134 (433)
289 3ice_A Transcription terminati 95.5 0.007 2.4E-07 60.5 3.5 41 37-79 173-215 (422)
290 3nh6_A ATP-binding cassette SU 95.5 0.017 5.9E-07 56.9 6.3 23 38-60 80-102 (306)
291 2j9r_A Thymidine kinase; TK1, 95.5 0.02 6.9E-07 52.5 6.2 112 37-159 27-140 (214)
292 3e1s_A Exodeoxyribonuclease V, 95.5 0.018 6.2E-07 62.5 6.8 22 39-60 205-226 (574)
293 1nks_A Adenylate kinase; therm 95.4 0.013 4.5E-07 53.7 4.9 22 39-60 2-23 (194)
294 3e70_C DPA, signal recognition 95.4 0.053 1.8E-06 54.1 9.5 39 36-76 127-165 (328)
295 3vaa_A Shikimate kinase, SK; s 95.4 0.0068 2.3E-07 56.1 2.9 23 38-60 25-47 (199)
296 3kb2_A SPBC2 prophage-derived 95.4 0.0067 2.3E-07 54.6 2.8 21 40-60 3-23 (173)
297 1kgd_A CASK, peripheral plasma 95.4 0.0081 2.8E-07 54.5 3.3 23 38-60 5-27 (180)
298 3c8u_A Fructokinase; YP_612366 95.4 0.011 3.8E-07 55.0 4.3 38 19-60 7-44 (208)
299 1sky_E F1-ATPase, F1-ATP synth 95.4 0.028 9.7E-07 58.2 7.6 50 39-90 152-203 (473)
300 1tue_A Replication protein E1; 95.4 0.01 3.5E-07 53.8 3.7 36 20-60 45-80 (212)
301 3trf_A Shikimate kinase, SK; a 95.4 0.0067 2.3E-07 55.3 2.6 23 38-60 5-27 (185)
302 2rhm_A Putative kinase; P-loop 95.4 0.0096 3.3E-07 54.7 3.7 24 37-60 4-27 (193)
303 3lw7_A Adenylate kinase relate 95.3 0.0082 2.8E-07 54.2 3.0 20 39-58 2-21 (179)
304 1pzn_A RAD51, DNA repair and r 95.3 0.035 1.2E-06 56.1 7.9 48 37-84 130-181 (349)
305 3lda_A DNA repair protein RAD5 95.3 0.038 1.3E-06 56.8 8.1 57 37-94 177-237 (400)
306 3tau_A Guanylate kinase, GMP k 95.3 0.0098 3.4E-07 55.4 3.5 23 38-60 8-30 (208)
307 3cmu_A Protein RECA, recombina 95.2 0.018 6.3E-07 70.3 6.5 84 37-127 1426-1515(2050)
308 3tui_C Methionine import ATP-b 95.2 0.038 1.3E-06 55.6 7.8 23 38-60 54-76 (366)
309 2r2a_A Uncharacterized protein 95.2 0.021 7.3E-07 52.3 5.5 22 39-60 6-27 (199)
310 3fwy_A Light-independent proto 95.2 0.022 7.4E-07 56.6 5.9 41 36-78 46-86 (314)
311 1q57_A DNA primase/helicase; d 95.2 0.061 2.1E-06 57.8 9.8 53 37-93 241-294 (503)
312 2ga8_A Hypothetical 39.9 kDa p 95.2 0.014 4.7E-07 58.2 4.3 44 15-60 3-46 (359)
313 3umf_A Adenylate kinase; rossm 95.1 0.012 4.2E-07 54.6 3.5 26 35-60 26-51 (217)
314 1kag_A SKI, shikimate kinase I 95.1 0.0091 3.1E-07 53.7 2.6 22 39-60 5-26 (173)
315 2r6a_A DNAB helicase, replicat 95.1 0.098 3.4E-06 55.2 10.9 50 37-90 202-252 (454)
316 2qor_A Guanylate kinase; phosp 95.1 0.0087 3E-07 55.6 2.4 24 37-60 11-34 (204)
317 2plr_A DTMP kinase, probable t 95.0 0.026 9E-07 52.6 5.8 23 38-60 4-26 (213)
318 1y63_A LMAJ004144AAA protein; 95.0 0.012 4E-07 53.6 3.1 23 38-60 10-32 (184)
319 4eun_A Thermoresistant glucoki 95.0 0.012 4.1E-07 54.4 3.3 24 37-60 28-51 (200)
320 3a00_A Guanylate kinase, GMP k 95.0 0.0095 3.3E-07 54.3 2.5 22 39-60 2-23 (186)
321 1xx6_A Thymidine kinase; NESG, 95.0 0.01 3.5E-07 53.9 2.7 110 38-158 8-119 (191)
322 1zu4_A FTSY; GTPase, signal re 95.0 0.069 2.3E-06 53.1 8.9 40 36-77 103-142 (320)
323 1kht_A Adenylate kinase; phosp 95.0 0.011 3.6E-07 54.3 2.9 22 39-60 4-25 (192)
324 3ney_A 55 kDa erythrocyte memb 95.0 0.014 4.8E-07 53.2 3.5 24 37-60 18-41 (197)
325 1knq_A Gluconate kinase; ALFA/ 95.0 0.016 5.6E-07 52.1 4.0 24 37-60 7-30 (175)
326 2q6t_A DNAB replication FORK h 95.0 0.08 2.7E-06 55.7 9.9 53 37-93 199-252 (444)
327 3iij_A Coilin-interacting nucl 95.0 0.0096 3.3E-07 54.0 2.5 23 38-60 11-33 (180)
328 3t61_A Gluconokinase; PSI-biol 95.0 0.01 3.5E-07 55.0 2.6 23 38-60 18-40 (202)
329 2j37_W Signal recognition part 94.9 0.22 7.4E-06 52.7 12.9 40 36-77 99-138 (504)
330 2p5t_B PEZT; postsegregational 94.9 0.016 5.4E-07 55.9 3.9 26 35-60 29-54 (253)
331 1tev_A UMP-CMP kinase; ploop, 94.9 0.013 4.4E-07 53.9 3.2 23 38-60 3-25 (196)
332 1nn5_A Similar to deoxythymidy 94.9 0.02 6.9E-07 53.5 4.6 28 38-67 9-36 (215)
333 1xjc_A MOBB protein homolog; s 94.9 0.023 8E-07 50.2 4.6 36 38-75 4-39 (169)
334 1zuh_A Shikimate kinase; alpha 94.9 0.012 3.9E-07 52.7 2.7 23 38-60 7-29 (168)
335 3tlx_A Adenylate kinase 2; str 94.9 0.018 6.2E-07 55.0 4.2 41 16-60 11-51 (243)
336 3bgw_A DNAB-like replicative h 94.9 0.11 3.8E-06 54.4 10.5 52 37-92 196-247 (444)
337 3tr0_A Guanylate kinase, GMP k 94.9 0.015 5E-07 54.0 3.5 23 38-60 7-29 (205)
338 4gp7_A Metallophosphoesterase; 94.8 0.014 4.7E-07 52.4 3.0 23 38-60 9-31 (171)
339 1via_A Shikimate kinase; struc 94.8 0.0099 3.4E-07 53.6 2.0 21 40-60 6-26 (175)
340 4akg_A Glutathione S-transfera 94.8 0.16 5.4E-06 64.6 13.2 139 39-187 1268-1431(2695)
341 2cdn_A Adenylate kinase; phosp 94.8 0.016 5.3E-07 53.7 3.4 25 36-60 18-42 (201)
342 2c95_A Adenylate kinase 1; tra 94.8 0.014 4.8E-07 53.7 3.1 23 38-60 9-31 (196)
343 1ukz_A Uridylate kinase; trans 94.8 0.017 5.8E-07 53.5 3.6 25 36-60 13-37 (203)
344 2j41_A Guanylate kinase; GMP, 94.8 0.016 5.5E-07 53.8 3.5 23 38-60 6-28 (207)
345 1j8m_F SRP54, signal recogniti 94.8 0.11 3.8E-06 51.0 9.6 87 38-126 98-189 (297)
346 1g41_A Heat shock protein HSLU 94.8 0.011 3.9E-07 61.1 2.6 50 11-60 15-72 (444)
347 3cm0_A Adenylate kinase; ATP-b 94.7 0.018 6.1E-07 52.5 3.6 23 38-60 4-26 (186)
348 1ye8_A Protein THEP1, hypothet 94.7 0.016 5.4E-07 52.2 3.1 21 40-60 2-22 (178)
349 2qt1_A Nicotinamide riboside k 94.7 0.02 6.7E-07 53.3 3.9 25 36-60 19-43 (207)
350 1ls1_A Signal recognition part 94.7 0.085 2.9E-06 51.9 8.6 39 37-77 97-135 (295)
351 2zts_A Putative uncharacterize 94.7 0.053 1.8E-06 52.0 7.1 50 37-89 29-78 (251)
352 2z0h_A DTMP kinase, thymidylat 94.7 0.044 1.5E-06 50.3 6.3 21 40-60 2-22 (197)
353 2ffh_A Protein (FFH); SRP54, s 94.7 0.1 3.6E-06 53.8 9.5 38 37-76 97-134 (425)
354 2ze6_A Isopentenyl transferase 94.7 0.017 5.8E-07 55.6 3.4 22 39-60 2-23 (253)
355 2bdt_A BH3686; alpha-beta prot 94.7 0.018 6.2E-07 52.6 3.5 22 39-60 3-24 (189)
356 3k1j_A LON protease, ATP-depen 94.7 0.019 6.6E-07 63.2 4.2 42 11-60 41-82 (604)
357 1lvg_A Guanylate kinase, GMP k 94.7 0.013 4.5E-07 54.0 2.5 23 38-60 4-26 (198)
358 1ny5_A Transcriptional regulat 94.6 0.045 1.6E-06 56.3 6.7 134 11-156 137-281 (387)
359 1uf9_A TT1252 protein; P-loop, 94.6 0.019 6.3E-07 53.2 3.5 25 36-60 6-30 (203)
360 3a4m_A L-seryl-tRNA(SEC) kinas 94.6 0.017 6E-07 55.8 3.4 23 38-60 4-26 (260)
361 3b5x_A Lipid A export ATP-bind 94.6 0.13 4.6E-06 56.1 10.7 23 38-60 369-391 (582)
362 2bwj_A Adenylate kinase 5; pho 94.6 0.015 5.3E-07 53.6 2.8 23 38-60 12-34 (199)
363 3end_A Light-independent proto 94.6 0.04 1.4E-06 54.9 6.1 43 35-79 38-80 (307)
364 3asz_A Uridine kinase; cytidin 94.6 0.02 6.9E-07 53.4 3.6 24 37-60 5-28 (211)
365 2yhs_A FTSY, cell division pro 94.5 0.078 2.7E-06 55.4 8.0 43 36-81 291-333 (503)
366 2iyv_A Shikimate kinase, SK; t 94.5 0.013 4.5E-07 53.3 2.1 21 40-60 4-24 (184)
367 1qf9_A UMP/CMP kinase, protein 94.5 0.023 7.9E-07 52.1 3.7 24 37-60 5-28 (194)
368 3zvl_A Bifunctional polynucleo 94.5 0.078 2.7E-06 55.1 8.2 25 36-60 256-280 (416)
369 1s96_A Guanylate kinase, GMP k 94.5 0.02 6.9E-07 53.5 3.3 24 37-60 15-38 (219)
370 2wwf_A Thymidilate kinase, put 94.5 0.031 1.1E-06 52.1 4.7 24 37-60 9-32 (212)
371 2vli_A Antibiotic resistance p 94.5 0.012 4.1E-07 53.5 1.7 23 38-60 5-27 (183)
372 2xxa_A Signal recognition part 94.5 0.13 4.4E-06 53.5 9.6 41 36-78 98-139 (433)
373 1rj9_A FTSY, signal recognitio 94.4 0.033 1.1E-06 55.0 4.9 24 37-60 101-124 (304)
374 2bbw_A Adenylate kinase 4, AK4 94.4 0.021 7.1E-07 54.8 3.3 23 38-60 27-49 (246)
375 2pez_A Bifunctional 3'-phospho 94.4 0.025 8.6E-07 51.1 3.6 24 37-60 4-27 (179)
376 4a74_A DNA repair and recombin 94.4 0.062 2.1E-06 50.8 6.6 46 37-82 24-73 (231)
377 3dzd_A Transcriptional regulat 94.4 0.058 2E-06 55.1 6.7 162 10-185 128-314 (368)
378 1htw_A HI0065; nucleotide-bind 94.3 0.028 9.5E-07 49.3 3.7 23 38-60 33-55 (158)
379 1uj2_A Uridine-cytidine kinase 94.3 0.022 7.6E-07 54.8 3.4 25 36-60 20-44 (252)
380 1e6c_A Shikimate kinase; phosp 94.3 0.016 5.5E-07 52.0 2.2 22 39-60 3-24 (173)
381 2pbr_A DTMP kinase, thymidylat 94.3 0.064 2.2E-06 49.1 6.4 21 40-60 2-22 (195)
382 1z6g_A Guanylate kinase; struc 94.3 0.019 6.5E-07 53.8 2.7 23 38-60 23-45 (218)
383 1jjv_A Dephospho-COA kinase; P 94.3 0.025 8.6E-07 52.5 3.6 22 39-60 3-24 (206)
384 1znw_A Guanylate kinase, GMP k 94.3 0.023 8E-07 52.7 3.3 23 38-60 20-42 (207)
385 2r8r_A Sensor protein; KDPD, P 94.3 0.081 2.8E-06 48.9 6.8 39 39-79 7-45 (228)
386 2jaq_A Deoxyguanosine kinase; 94.2 0.02 7E-07 53.0 2.8 21 40-60 2-22 (205)
387 1aky_A Adenylate kinase; ATP:A 94.2 0.022 7.5E-07 53.6 3.0 23 38-60 4-26 (220)
388 1zd8_A GTP:AMP phosphotransfer 94.2 0.02 7E-07 54.1 2.8 23 38-60 7-29 (227)
389 3aez_A Pantothenate kinase; tr 94.2 0.028 9.6E-07 55.8 3.8 25 36-60 88-112 (312)
390 2pt5_A Shikimate kinase, SK; a 94.2 0.024 8.1E-07 50.6 2.9 21 40-60 2-22 (168)
391 2if2_A Dephospho-COA kinase; a 94.1 0.024 8.1E-07 52.6 3.0 21 40-60 3-23 (204)
392 1zak_A Adenylate kinase; ATP:A 94.1 0.02 7E-07 53.9 2.6 23 38-60 5-27 (222)
393 2dr3_A UPF0273 protein PH0284; 94.1 0.039 1.3E-06 52.8 4.7 39 38-78 23-61 (247)
394 2v54_A DTMP kinase, thymidylat 94.1 0.024 8.3E-07 52.5 3.0 23 38-60 4-26 (204)
395 1fx0_B ATP synthase beta chain 94.1 0.14 4.7E-06 53.3 8.7 88 37-126 164-275 (498)
396 2ck3_D ATP synthase subunit be 94.1 0.26 8.8E-06 51.0 10.6 64 22-92 142-207 (482)
397 2jeo_A Uridine-cytidine kinase 94.1 0.032 1.1E-06 53.5 3.8 24 37-60 24-47 (245)
398 3cmu_A Protein RECA, recombina 94.0 0.071 2.4E-06 65.4 7.5 85 37-128 382-472 (2050)
399 1cke_A CK, MSSA, protein (cyti 94.0 0.026 8.9E-07 53.3 3.1 22 39-60 6-27 (227)
400 3p32_A Probable GTPase RV1496/ 94.0 0.086 2.9E-06 53.6 7.1 39 36-76 77-115 (355)
401 2hf9_A Probable hydrogenase ni 94.0 0.04 1.4E-06 52.0 4.3 24 37-60 37-60 (226)
402 3hjn_A DTMP kinase, thymidylat 94.0 0.1 3.4E-06 47.8 6.8 48 40-89 2-49 (197)
403 3l0o_A Transcription terminati 94.0 0.15 5.3E-06 50.9 8.4 51 21-78 163-215 (427)
404 1sq5_A Pantothenate kinase; P- 93.9 0.059 2E-06 53.5 5.6 25 36-60 78-102 (308)
405 2f6r_A COA synthase, bifunctio 93.9 0.033 1.1E-06 54.5 3.7 25 36-60 73-97 (281)
406 3fb4_A Adenylate kinase; psych 93.9 0.027 9.4E-07 52.7 3.0 21 40-60 2-22 (216)
407 3rfe_A Platelet glycoprotein I 93.9 0.057 2E-06 45.5 4.7 42 451-494 24-66 (130)
408 1m7g_A Adenylylsulfate kinase; 93.9 0.033 1.1E-06 51.9 3.4 23 38-60 25-47 (211)
409 2fz4_A DNA repair protein RAD2 93.9 0.18 6.1E-06 47.8 8.6 101 41-155 111-227 (237)
410 2pt7_A CAG-ALFA; ATPase, prote 93.8 0.062 2.1E-06 53.8 5.6 80 39-128 172-251 (330)
411 3dl0_A Adenylate kinase; phosp 93.8 0.028 9.7E-07 52.6 3.0 21 40-60 2-22 (216)
412 3be4_A Adenylate kinase; malar 93.8 0.024 8.1E-07 53.2 2.4 23 38-60 5-27 (217)
413 3cmw_A Protein RECA, recombina 93.8 0.078 2.7E-06 64.1 7.2 85 37-128 731-821 (1706)
414 3b9q_A Chloroplast SRP recepto 93.8 0.053 1.8E-06 53.5 4.9 42 37-81 99-140 (302)
415 1np6_A Molybdopterin-guanine d 93.8 0.07 2.4E-06 47.6 5.2 23 38-60 6-28 (174)
416 2grj_A Dephospho-COA kinase; T 93.7 0.033 1.1E-06 50.8 3.0 23 38-60 12-34 (192)
417 4eaq_A DTMP kinase, thymidylat 93.7 0.067 2.3E-06 50.4 5.2 24 37-60 25-48 (229)
418 4edh_A DTMP kinase, thymidylat 93.7 0.12 4E-06 48.0 6.8 27 38-66 6-32 (213)
419 2eyu_A Twitching motility prot 93.7 0.063 2.1E-06 51.7 5.1 107 38-158 25-134 (261)
420 1vht_A Dephospho-COA kinase; s 93.6 0.042 1.5E-06 51.5 3.8 23 38-60 4-26 (218)
421 3iqw_A Tail-anchored protein t 93.6 0.075 2.6E-06 53.2 5.7 44 36-81 14-57 (334)
422 4e22_A Cytidylate kinase; P-lo 93.6 0.038 1.3E-06 53.1 3.4 23 38-60 27-49 (252)
423 2ged_A SR-beta, signal recogni 93.6 0.054 1.8E-06 49.5 4.3 25 37-61 47-71 (193)
424 1cp2_A CP2, nitrogenase iron p 93.5 0.08 2.7E-06 51.5 5.7 39 39-79 2-40 (269)
425 1yrb_A ATP(GTP)binding protein 93.5 0.076 2.6E-06 51.4 5.5 26 35-60 11-36 (262)
426 2wsm_A Hydrogenase expression/ 93.5 0.043 1.5E-06 51.5 3.5 40 15-60 13-52 (221)
427 3exa_A TRNA delta(2)-isopenten 93.5 0.042 1.4E-06 53.6 3.4 23 38-60 3-25 (322)
428 3tif_A Uncharacterized ABC tra 93.4 0.052 1.8E-06 51.4 4.0 23 38-60 31-53 (235)
429 3nwj_A ATSK2; P loop, shikimat 93.4 0.03 1E-06 53.5 2.2 22 39-60 49-70 (250)
430 3io3_A DEHA2D07832P; chaperone 93.4 0.085 2.9E-06 53.1 5.7 42 36-79 16-59 (348)
431 3a8t_A Adenylate isopentenyltr 93.3 0.052 1.8E-06 53.7 3.9 23 38-60 40-62 (339)
432 3lnc_A Guanylate kinase, GMP k 93.3 0.03 1E-06 53.1 2.1 23 38-60 27-50 (231)
433 3b60_A Lipid A export ATP-bind 93.3 0.17 5.9E-06 55.3 8.5 23 38-60 369-391 (582)
434 1ak2_A Adenylate kinase isoenz 93.3 0.042 1.4E-06 52.1 3.2 23 38-60 16-38 (233)
435 1u0j_A DNA replication protein 93.3 0.076 2.6E-06 50.6 4.8 23 38-60 104-126 (267)
436 3r20_A Cytidylate kinase; stru 93.3 0.044 1.5E-06 51.4 3.1 23 38-60 9-31 (233)
437 3cmw_A Protein RECA, recombina 93.3 0.098 3.4E-06 63.3 6.8 84 36-126 1429-1518(1706)
438 1nlf_A Regulatory protein REPA 93.2 0.071 2.4E-06 52.1 4.8 40 38-79 30-79 (279)
439 2ehv_A Hypothetical protein PH 93.2 0.039 1.4E-06 53.0 2.9 38 38-76 30-67 (251)
440 2og2_A Putative signal recogni 93.2 0.073 2.5E-06 53.6 4.9 42 37-81 156-197 (359)
441 3ld9_A DTMP kinase, thymidylat 93.2 0.11 3.9E-06 48.3 5.9 29 36-66 19-47 (223)
442 1gtv_A TMK, thymidylate kinase 93.2 0.021 7.3E-07 53.3 0.9 21 40-60 2-22 (214)
443 3foz_A TRNA delta(2)-isopenten 93.2 0.053 1.8E-06 52.8 3.7 24 37-60 9-32 (316)
444 2qmh_A HPR kinase/phosphorylas 93.2 0.05 1.7E-06 49.0 3.3 23 38-60 34-56 (205)
445 3crm_A TRNA delta(2)-isopenten 93.2 0.045 1.6E-06 54.0 3.2 23 38-60 5-27 (323)
446 1e4v_A Adenylate kinase; trans 93.2 0.042 1.4E-06 51.3 2.9 21 40-60 2-22 (214)
447 1ltq_A Polynucleotide kinase; 93.1 0.045 1.5E-06 54.3 3.2 22 39-60 3-24 (301)
448 3sr0_A Adenylate kinase; phosp 93.1 0.046 1.6E-06 50.4 3.0 21 40-60 2-22 (206)
449 2xb4_A Adenylate kinase; ATP-b 93.1 0.045 1.5E-06 51.5 2.9 21 40-60 2-22 (223)
450 2afh_E Nitrogenase iron protei 93.1 0.1 3.5E-06 51.4 5.6 39 39-79 3-41 (289)
451 3d3q_A TRNA delta(2)-isopenten 93.0 0.048 1.7E-06 54.1 3.2 22 39-60 8-29 (340)
452 3rfe_A Platelet glycoprotein I 93.0 0.092 3.2E-06 44.2 4.5 54 463-519 11-67 (130)
453 3zq6_A Putative arsenical pump 93.0 0.13 4.6E-06 51.4 6.5 45 38-84 14-58 (324)
454 2i3b_A HCR-ntpase, human cance 93.0 0.044 1.5E-06 49.8 2.6 21 40-60 3-23 (189)
455 2wji_A Ferrous iron transport 93.0 0.064 2.2E-06 47.5 3.7 23 39-61 4-26 (165)
456 1w36_D RECD, exodeoxyribonucle 93.0 0.12 4.1E-06 56.7 6.6 23 38-60 164-186 (608)
457 1ypw_A Transitional endoplasmi 92.9 0.044 1.5E-06 62.3 3.1 60 6-67 472-538 (806)
458 2f1r_A Molybdopterin-guanine d 92.9 0.033 1.1E-06 49.6 1.6 22 39-60 3-24 (171)
459 2onk_A Molybdate/tungstate ABC 92.9 0.055 1.9E-06 51.3 3.2 22 39-60 25-46 (240)
460 2cbz_A Multidrug resistance-as 92.9 0.057 2E-06 51.2 3.3 23 38-60 31-53 (237)
461 1svm_A Large T antigen; AAA+ f 92.9 0.056 1.9E-06 55.0 3.4 24 37-60 168-191 (377)
462 2orv_A Thymidine kinase; TP4A 92.8 0.25 8.5E-06 45.7 7.4 108 37-158 18-127 (234)
463 3ug7_A Arsenical pump-driving 92.8 0.13 4.5E-06 52.0 6.2 41 36-78 24-64 (349)
464 3llm_A ATP-dependent RNA helic 92.8 0.39 1.3E-05 45.4 9.2 22 39-60 77-98 (235)
465 2pcj_A ABC transporter, lipopr 92.8 0.049 1.7E-06 51.1 2.7 23 38-60 30-52 (224)
466 2qe7_A ATP synthase subunit al 92.8 0.12 4.1E-06 53.8 5.7 86 37-126 161-263 (502)
467 3qf4_A ABC transporter, ATP-bi 92.8 0.31 1.1E-05 53.2 9.5 23 38-60 369-391 (587)
468 3ake_A Cytidylate kinase; CMP 92.8 0.053 1.8E-06 50.3 3.0 21 40-60 4-24 (208)
469 3lv8_A DTMP kinase, thymidylat 92.8 0.15 5.3E-06 47.9 6.1 35 38-74 27-62 (236)
470 2r9v_A ATP synthase subunit al 92.8 0.13 4.6E-06 53.4 6.1 85 38-126 175-276 (515)
471 1a7j_A Phosphoribulokinase; tr 92.7 0.028 9.5E-07 55.2 1.0 24 37-60 4-27 (290)
472 2zej_A Dardarin, leucine-rich 92.7 0.056 1.9E-06 49.0 3.0 21 40-60 4-24 (184)
473 3v9p_A DTMP kinase, thymidylat 92.7 0.12 4.1E-06 48.3 5.2 28 37-66 24-51 (227)
474 1tf7_A KAIC; homohexamer, hexa 92.7 0.093 3.2E-06 56.6 5.1 38 38-77 281-318 (525)
475 3gfo_A Cobalt import ATP-bindi 92.6 0.063 2.2E-06 52.0 3.3 23 38-60 34-56 (275)
476 4tmk_A Protein (thymidylate ki 92.6 0.18 6.1E-06 46.7 6.3 34 39-74 4-38 (213)
477 3j16_B RLI1P; ribosome recycli 92.6 0.37 1.3E-05 52.4 9.7 124 39-162 379-533 (608)
478 3f9v_A Minichromosome maintena 92.6 0.037 1.3E-06 60.5 1.8 49 12-60 296-349 (595)
479 4f4c_A Multidrug resistance pr 92.6 0.3 1E-05 58.8 9.8 24 37-60 443-466 (1321)
480 1b0u_A Histidine permease; ABC 92.6 0.065 2.2E-06 51.7 3.3 23 38-60 32-54 (262)
481 2ixe_A Antigen peptide transpo 92.5 0.082 2.8E-06 51.2 4.0 23 38-60 45-67 (271)
482 2vp4_A Deoxynucleoside kinase; 92.5 0.071 2.4E-06 50.4 3.5 25 36-60 18-42 (230)
483 2v9p_A Replication protein E1; 92.5 0.065 2.2E-06 52.6 3.2 23 38-60 126-148 (305)
484 4g1u_C Hemin import ATP-bindin 92.5 0.087 3E-06 50.8 4.1 23 38-60 37-59 (266)
485 2olj_A Amino acid ABC transpor 92.5 0.068 2.3E-06 51.4 3.3 23 38-60 50-72 (263)
486 1oix_A RAS-related protein RAB 92.5 0.067 2.3E-06 48.8 3.2 24 38-61 29-52 (191)
487 3kjh_A CO dehydrogenase/acetyl 92.4 0.11 3.9E-06 49.7 5.0 40 41-82 3-42 (254)
488 4a82_A Cystic fibrosis transme 92.4 0.15 5.2E-06 55.6 6.4 24 37-60 366-389 (578)
489 2woo_A ATPase GET3; tail-ancho 92.4 0.14 4.9E-06 51.2 5.7 41 37-79 18-58 (329)
490 2ocp_A DGK, deoxyguanosine kin 92.4 0.071 2.4E-06 50.8 3.3 23 38-60 2-24 (241)
491 3vr4_D V-type sodium ATPase su 92.4 0.12 4.1E-06 53.1 5.1 87 38-126 151-257 (465)
492 2ck3_A ATP synthase subunit al 92.3 0.15 5.1E-06 53.2 5.7 90 37-126 161-271 (510)
493 2wjg_A FEOB, ferrous iron tran 92.3 0.087 3E-06 47.8 3.7 24 38-61 7-30 (188)
494 2ghi_A Transport protein; mult 92.3 0.074 2.5E-06 51.2 3.3 23 38-60 46-68 (260)
495 4dzz_A Plasmid partitioning pr 92.3 0.13 4.6E-06 47.4 5.1 43 39-83 2-45 (206)
496 1vpl_A ABC transporter, ATP-bi 92.3 0.074 2.5E-06 50.9 3.3 23 38-60 41-63 (256)
497 2yl4_A ATP-binding cassette SU 92.3 0.15 5.1E-06 56.0 6.1 23 38-60 370-392 (595)
498 1sgw_A Putative ABC transporte 92.3 0.054 1.8E-06 50.3 2.2 23 38-60 35-57 (214)
499 2dyk_A GTP-binding protein; GT 92.2 0.083 2.9E-06 46.4 3.4 23 39-61 2-24 (161)
500 4b3f_X DNA-binding protein smu 92.2 0.17 5.7E-06 56.2 6.6 62 17-89 192-253 (646)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.8e-40 Score=361.53 Aligned_cols=315 Identities=18% Similarity=0.234 Sum_probs=247.9
Q ss_pred ecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhc--ChhhhccCCeeEEEEecCCC--CHHHHHHHH
Q 042791 14 CGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN--NDEVKRNFEKVIWVCVSNTF--DQIRIAKAI 89 (761)
Q Consensus 14 vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~--~~~~~~~f~~~~~v~~~~~~--~~~~~~~~i 89 (761)
+||++++++|.++|.... ....++|+|+|+||+||||||+++++ +.++..+|++++|++++... +...++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997543 34579999999999999999999996 45788899999999998875 788999999
Q ss_pred HHHhcCCCC-------CCCcHHHHHHHHHHHhCCc-eEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchhhhh
Q 042791 90 IEGLGESAS-------GLNEFQSLMSRIQSSIKGK-KNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVAR 161 (761)
Q Consensus 90 ~~~l~~~~~-------~~~~~~~~~~~~~~~l~~~-~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~ 161 (761)
+.+++.... ...+.......+++.+.++ |+|||+||||+.. .+ .+ +. .+|++||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~--~~-~~----~~-~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE--TI-RW----AQ-ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH--HH-HH----HH-HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch--hh-cc----cc-cCCCEEEEEcCCHHHHH
Confidence 999976421 1223456778899999986 9999999998732 11 11 11 16899999999999988
Q ss_pred hcC-CCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHHhhCCCCHHHHHHHHhhh
Q 042791 162 MMG-STDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSKSTVKEWQRILESE 240 (761)
Q Consensus 162 ~~~-~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~~ 240 (761)
.++ ....++|++|+++||++||.++++.... .+...+++.+|++.|+|+||||+++|+.++.+. ..|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~--w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT--FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS--HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccch--HHHHHHhHHH
Confidence 765 3457999999999999999999875422 246677899999999999999999999998762 3444444433
Q ss_pred hhcccccccccccchhcccCCCCCCcchhHHhh-----------hhcCCCCCcccCHHHHHHHHHHc--CCcccCC-cch
Q 042791 241 MWKVQEIGQDLLAPLLLSYNDLPSNSMVKQCFS-----------YCTVFPKDCIMNKEKLIDLWMAQ--GYLNADE-DEE 306 (761)
Q Consensus 241 ~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~w~~~--g~~~~~~-~~~ 306 (761)
.... ...++..++..||+.|+. +++.||. ++++||+++.++ +..|+++ ||+.... +..
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~--~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAM--ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHH--HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCC
T ss_pred hhcc--cHHHHHHHHhcccccccH--HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCC
Confidence 2221 245688899999999988 9999999 999999999888 7899999 8887655 445
Q ss_pred HHHHHHHHHHHHHhcCCccccccCCCCCeeEEEEchHHHHHHHHHhccce
Q 042791 307 METIGEEYFNILATRSFFQEFEKNDDDNIRSCKMHDIVHDFAQFVSSKEC 356 (761)
Q Consensus 307 ~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~hd~i~~~~~~~~~~~~ 356 (761)
+++.+. ++++|++++|++....+ ...+|+|||++++++...+..++
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHH
Confidence 677776 99999999999976543 33479999999999998877664
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.1e-32 Score=304.50 Aligned_cols=284 Identities=18% Similarity=0.215 Sum_probs=218.8
Q ss_pred eecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCe-eEEEEecCCCCHHHHHHHHHH
Q 042791 13 VCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK-VIWVCVSNTFDQIRIAKAIIE 91 (761)
Q Consensus 13 ~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~-~~~v~~~~~~~~~~~~~~i~~ 91 (761)
.|||++++++|.++|... +..++|+|+||||+||||||++++++.++...|+. ++|++++...+...+...++.
T Consensus 130 ~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 499999999999999753 23689999999999999999999975567888975 999999998888888777777
Q ss_pred HhcCC---CC---C-----CCcHHHHHHHHHHHh---CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecch
Q 042791 92 GLGES---AS---G-----LNEFQSLMSRIQSSI---KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE 157 (761)
Q Consensus 92 ~l~~~---~~---~-----~~~~~~~~~~~~~~l---~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~ 157 (761)
.++.. .. . ....+.....+++.+ .++|+||||||+|+ ...|+. ++ +|++||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~----f~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNA----FN---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHH----HH---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHh----hC---CCeEEEEeccCh
Confidence 54321 00 0 112344556666655 68999999999987 233333 22 589999999998
Q ss_pred hhhhhcCCCCeeecC------CCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHHhhCC-CCH
Q 042791 158 SVARMMGSTDSISIK------QLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSK-STV 230 (761)
Q Consensus 158 ~~~~~~~~~~~~~l~------~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-~~~ 230 (761)
.++..+.....++++ +|+++||++||.+... .. ..++..+ .|+|+||||.++|+.|+.+ .+.
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g-~~-------~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CR-------PQDLPRE---VLTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHC-CC-------TTTHHHH---HCCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcC-CC-------HHHHHHH---HhCCCHHHHHHHHHHHhCCCCCH
Confidence 887544333356666 9999999999999842 11 1223333 3999999999999999987 467
Q ss_pred HHHHHHHhhhhhcccccccccccchhcccCCCCCCcch-hHHhhhhcCCCCCcccCHHHHHHHHHHcCCcccCCcchHHH
Q 042791 231 KEWQRILESEMWKVQEIGQDLLAPLLLSYNDLPSNSMV-KQCFSYCTVFPKDCIMNKEKLIDLWMAQGYLNADEDEEMET 309 (761)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~ 309 (761)
+.|... ....+..+|..||+.|++ +. |.||+++++||++..++...+...|+++| ++
T Consensus 345 eeW~~~----------~~~~I~aaLelSYd~Lp~--eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------ee 402 (1221)
T 1vt4_I 345 DNWKHV----------NCDKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KS 402 (1221)
T ss_dssp HHHHHC----------SCHHHHHHHHHHHHHSCT--THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SH
T ss_pred HHHhcC----------ChhHHHHHHHHHHHhCCH--HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HH
Confidence 888653 235677889999999998 78 99999999999999999999999997766 12
Q ss_pred HHHHHHHHHHhcCCccccccCCCCCeeEEEEchHHHHHH
Q 042791 310 IGEEYFNILATRSFFQEFEKNDDDNIRSCKMHDIVHDFA 348 (761)
Q Consensus 310 ~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~hd~i~~~~ 348 (761)
.+..++++|++++|++.. +....++|||+++++.
T Consensus 403 dAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHh
Confidence 477889999999999873 1224689999988843
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.98 E-value=1.8e-31 Score=327.19 Aligned_cols=315 Identities=22% Similarity=0.278 Sum_probs=243.3
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhh-hccC-CeeEEEEecCCCC-
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEV-KRNF-EKVIWVCVSNTFD- 81 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~-~~~f-~~~~~v~~~~~~~- 81 (761)
.+|.....||||++++++|.++|... .+..++|+|+|+||+||||||++++++.+. ...| +.++|++++....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~----~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKL----NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTT----TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhc----cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 34566778999999999999999754 245789999999999999999999986433 3445 7788999988543
Q ss_pred -HHHHHHHHHHHhcCCC----CCCCcHHHHHHHHHHHhCCc--eEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEe
Q 042791 82 -QIRIAKAIIEGLGESA----SGLNEFQSLMSRIQSSIKGK--KNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT 154 (761)
Q Consensus 82 -~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~~~~l~~~--~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTt 154 (761)
....+..++..+.... ......+...+.++..+.++ |+||||||+|+. .. +....+|++|||||
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~-------~~~~~~~~~ilvTt 264 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WV-------LKAFDNQCQILLTT 264 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HH-------HTTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HH-------HHhhcCCCEEEEEc
Confidence 2334566777665433 22356778888888888766 999999999753 22 22236789999999
Q ss_pred cchhhhhh-cCCCCeeecCC-CChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHHhhCCCCHHH
Q 042791 155 RNESVARM-MGSTDSISIKQ-LAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSKSTVKE 232 (761)
Q Consensus 155 r~~~~~~~-~~~~~~~~l~~-l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~ 232 (761)
|++.++.. .+....+++++ |+++||++||...++... +...+.+++|+++|+|+||||+++|++|+.+. ..
T Consensus 265 R~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~ 337 (1249)
T 3sfz_A 265 RDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NR 337 (1249)
T ss_dssp SSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SC
T ss_pred CCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hH
Confidence 99988754 45567899996 999999999999884321 23456689999999999999999999999874 35
Q ss_pred HHHHHhhhhhccc--------ccccccccchhcccCCCCCCcchhHHhhhhcCCCCCcccCHHHHHHHHHHcCCcccCCc
Q 042791 233 WQRILESEMWKVQ--------EIGQDLLAPLLLSYNDLPSNSMVKQCFSYCTVFPKDCIMNKEKLIDLWMAQGYLNADED 304 (761)
Q Consensus 233 ~~~~l~~~~~~~~--------~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~g~~~~~~~ 304 (761)
|..+++....... ...+.+..+|..||+.|++ +.|.||.++++||+++.++...++..|.++
T Consensus 338 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~--~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------- 407 (1249)
T 3sfz_A 338 WAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------- 407 (1249)
T ss_dssp HHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT--TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC--------
T ss_pred HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH--HHHHHHHHhCccCCCCeeCHHHHHHHhCCC--------
Confidence 6666654432221 1113577889999999999 899999999999999999999999999433
Q ss_pred chHHHHHHHHHHHHHhcCCccccccCCCCCeeEEEEchHHHHHHHHHhccc
Q 042791 305 EEMETIGEEYFNILATRSFFQEFEKNDDDNIRSCKMHDIVHDFAQFVSSKE 355 (761)
Q Consensus 305 ~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~hd~i~~~~~~~~~~~ 355 (761)
.+.+.+++++|++++|++... .+....|+||+++++++.....++
T Consensus 408 ---~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 ---TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ---HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ---HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 356788899999999998643 233457999999999999886654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=7.5e-30 Score=285.64 Aligned_cols=309 Identities=22% Similarity=0.271 Sum_probs=230.2
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhh-hccC-CeeEEEEecCCCCHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEV-KRNF-EKVIWVCVSNTFDQI 83 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~-~~~f-~~~~~v~~~~~~~~~ 83 (761)
.|.....||||+++++++.+++... .+..++|+|+|+||+||||||.+++++... ...| +.++|++++.. +..
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~ 193 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKS 193 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chH
Confidence 3556778999999999999999754 234789999999999999999999986555 7788 58999999775 333
Q ss_pred HHHHHH---HHHhcCC----CCCCCcHHHHHHHHHHHhCC--ceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEe
Q 042791 84 RIAKAI---IEGLGES----ASGLNEFQSLMSRIQSSIKG--KKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT 154 (761)
Q Consensus 84 ~~~~~i---~~~l~~~----~~~~~~~~~~~~~~~~~l~~--~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTt 154 (761)
.+...+ +..++.. .......+.....+...+.+ +++|||+||+|+. . . +....++++|||||
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~---~----l~~l~~~~~ilvTs 264 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--W---V----LKAFDSQCQILLTT 264 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--H---H----HHTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--H---H----HHHhcCCCeEEEEC
Confidence 333333 3444421 12334566777777777754 7899999999752 1 1 22335689999999
Q ss_pred cchhhhhhcCCCCeeec---CCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHHhhCCCCHH
Q 042791 155 RNESVARMMGSTDSISI---KQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSKSTVK 231 (761)
Q Consensus 155 r~~~~~~~~~~~~~~~l---~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~ 231 (761)
|++.+...+. ...+++ ++|+.+|++++|...++.. .....+.+.+|++.|+|+|+||.++|+.++.+. .
T Consensus 265 R~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~ 336 (591)
T 1z6t_A 265 RDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--N 336 (591)
T ss_dssp SCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--T
T ss_pred CCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--h
Confidence 9988776543 234454 5899999999999988542 122345689999999999999999999998873 3
Q ss_pred HHHHHHhhhhhccc--------ccccccccchhcccCCCCCCcchhHHhhhhcCCCCCcccCHHHHHHHHHHcCCcccCC
Q 042791 232 EWQRILESEMWKVQ--------EIGQDLLAPLLLSYNDLPSNSMVKQCFSYCTVFPKDCIMNKEKLIDLWMAQGYLNADE 303 (761)
Q Consensus 232 ~~~~~l~~~~~~~~--------~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~g~~~~~~ 303 (761)
.|..+++....... .....+..++..||+.|++ ..+.||.++++|+++..++...+...|..+
T Consensus 337 ~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~--~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------- 407 (591)
T 1z6t_A 337 RWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDYYTDLSILQKDVKVPTKVLCILWDME------- 407 (591)
T ss_dssp CHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT--TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------
T ss_pred hHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH--HHHHHHHHccccCCCCccCHHHHHHHhccC-------
Confidence 57766655432211 1123567788999999998 899999999999999999999998888432
Q ss_pred cchHHHHHHHHHHHHHhcCCccccccCCCCCeeEEEEchHHHHHHHHHh
Q 042791 304 DEEMETIGEEYFNILATRSFFQEFEKNDDDNIRSCKMHDIVHDFAQFVS 352 (761)
Q Consensus 304 ~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~hd~i~~~~~~~~ 352 (761)
.+.+...+..|++++|+..... +....|+||+++++++....
T Consensus 408 ----~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 ----TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp ----HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhh
Confidence 2346788999999999985332 23347999999999998773
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=5.5e-29 Score=279.76 Aligned_cols=366 Identities=15% Similarity=0.094 Sum_probs=209.2
Q ss_pred CceEEEEEeecCCC-CCcccccCCCceeEEEEcccCCC------------------------------------------
Q 042791 374 VKVRHLGLNFQRGA-SFPMSFFEFDRLRSLLIYDRSYS------------------------------------------ 410 (761)
Q Consensus 374 ~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~------------------------------------------ 410 (761)
.++..|+++.+.+. .+|+++.++++|++|+|++|.+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 46777777777665 67778888888888888887430
Q ss_pred -------------------------------CCCCchhhHHHHhccCCcceEEeeccccccCCccccccc--------cc
Q 042791 411 -------------------------------NGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRI--------KE 451 (761)
Q Consensus 411 -------------------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l--------~~ 451 (761)
.+.+.+ +|. .+.++++|++|+|++|.+++.......+ ..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 012222 333 3677888888888877765410000000 01
Q ss_pred cccchh--cccccCccccCCcCCc-cCchhhhccCCCcEEecCCcc-Ccc-ccccccccc------ccccEeecCCcccc
Q 042791 452 IPENVG--KLIHLKYLNLSELGIE-RLPETLCELYNLQKLDIRRCR-NLR-ELPAGIGKL------MNMRTLLNGETYAL 520 (761)
Q Consensus 452 lp~~~~--~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~-~~~-~lp~~~~~l------~~L~~L~l~~~~~~ 520 (761)
+|..++ ++++|++|++++|.+. .+|..++++++|++|++++|. ..+ .+|..+..+ ++|++|++++|.+.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 777777 7888888888888755 677788888888888888876 555 677777665 78888888888655
Q ss_pred ccccc--cCCCCCCCcccCceeecCc-cCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCC-CCcEEEE
Q 042791 521 KYMPI--GISKLTNLRTLDRFVVGGG-VDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKN-LLRLHLV 596 (761)
Q Consensus 521 ~~~p~--~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-L~~L~l~ 596 (761)
.+|. .++.+++|+.|++++|... ..+ .+..+++|+.|+++++..- .++. .+..+.+ |+.|+++
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~----------~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPA----------NFCGFTEQVENLSFA 385 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCT----------TSEEECTTCCEEECC
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccH----------hhhhhcccCcEEEcc
Confidence 7777 7778888888888777765 555 6667777777777765333 2211 1233333 4444444
Q ss_pred eecccCCCCCcC----------cccch-hHHHHHhhCC-------CCCCCceEEEEeeCCCCCCchhh-hhcCCcEEEee
Q 042791 597 FGRVVDGEGEEG----------RRKNE-KDKQLLEALQ-------PPLNVEELWIIFYGGNIFPKWLT-LLTNLRNLTLA 657 (761)
Q Consensus 597 ~~~l~~~~~~~~----------~~~~~-~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~l~ 657 (761)
.|.+........ ..... .....+..+. .+.+|+.|++++|.+..+|..+. .+++|+.|+++
T Consensus 386 ~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp SSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECC
T ss_pred CCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECC
Confidence 443321110000 00000 0001111222 34467777777777666665543 46777777777
Q ss_pred cCCCCCCCCCC-------------------------CCCCcceE--EeccCcCceEeCccccCCCcccccCCccceeecc
Q 042791 658 SCVNCEHLPPL-------------------------GKLPLEKL--VIDDLKSVKSVGNEFLGIEENIIAFPKLKYLKIW 710 (761)
Q Consensus 658 ~~~~~~~~~~~-------------------------~~lpl~~l--~l~~l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 710 (761)
+|... .+|.. ..+|.... .+.+++.|++++|.++++|..+..+++|++|+++
T Consensus 466 ~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 466 GNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp SSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECC
T ss_pred CCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECC
Confidence 76532 33311 11111111 2234445555555555555555556666666664
Q ss_pred ccc------cccc----CCCCCccceEeeecCCCCcCCCcccCCCCCccEEEEecCCC
Q 042791 711 ATE------ELEE----TTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWGCPI 758 (761)
Q Consensus 711 ~~~------~~~~----~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~ 758 (761)
+|. .... +..+++|++|++++|.. +.+|..+. ++|+.|+|++|+.
T Consensus 545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTT
T ss_pred CCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCC
Confidence 322 2211 33456666666666654 55555543 5666666666654
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=5.3e-29 Score=286.74 Aligned_cols=346 Identities=19% Similarity=0.149 Sum_probs=255.2
Q ss_pred CceEEEEEeecCCC-CCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccc
Q 042791 374 VKVRHLGLNFQRGA-SFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEI 452 (761)
Q Consensus 374 ~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 452 (761)
..++.+.++.+.+. .+|..+..+++|+.|++++|.+ .+.++...+.++++|++|++++|.+.+ .+
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l-----~~~ip~~~l~~l~~L~~L~Ls~n~l~~---------~~ 359 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF-----SGELPMDTLLKMRGLKVLDLSFNEFSG---------EL 359 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE-----EEECCHHHHTTCTTCCEEECCSSEEEE---------CC
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcc-----cCcCCHHHHhcCCCCCEEeCcCCccCc---------cc
Confidence 45667777666655 4566677777777777766653 234555556777777777777666554 56
Q ss_pred ccchhccc-ccCccccCCcCCc-cCchhhhc--cCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCC
Q 042791 453 PENVGKLI-HLKYLNLSELGIE-RLPETLCE--LYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGIS 528 (761)
Q Consensus 453 p~~~~~l~-~L~~L~l~~~~i~-~lp~~~~~--l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~ 528 (761)
|..+..+. +|++|++++|.++ .+|..+.. +++|++|++++|...+.+|..+..+++|++|++++|.....+|..++
T Consensus 360 p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 439 (768)
T 3rgz_A 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439 (768)
T ss_dssp CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh
Confidence 77777776 7888888887766 56666655 67788888888876667888888888888888888877777888888
Q ss_pred CCCCCcccCceeecCc-cCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCc
Q 042791 529 KLTNLRTLDRFVVGGG-VDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEE 607 (761)
Q Consensus 529 ~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 607 (761)
.+++|+.|++.+|... ..+..+..+++|+.|+++++.....+ ...+..+++|+.|+++.|.+.+.
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~----------p~~l~~l~~L~~L~L~~N~l~~~---- 505 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI----------PSGLSNCTNLNWISLSNNRLTGE---- 505 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC----------CGGGGGCTTCCEEECCSSCCCSC----
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC----------CHHHhcCCCCCEEEccCCccCCc----
Confidence 8888888888877754 45556677788888888765322111 12466788899999888875321
Q ss_pred CcccchhHHHHHhhCCCCCCCceEEEEeeCCC-CCCchhhhhcCCcEEEeecCCCCCCCCCC-CC---------------
Q 042791 608 GRRKNEKDKQLLEALQPPLNVEELWIIFYGGN-IFPKWLTLLTNLRNLTLASCVNCEHLPPL-GK--------------- 670 (761)
Q Consensus 608 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~-~~--------------- 670 (761)
++..+..+++|+.|++++|... .+|..+..+++|+.|++++|.....+|.. ..
T Consensus 506 ----------~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 506 ----------IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp ----------CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred ----------CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 2234456788999999999875 67889999999999999998755444420 00
Q ss_pred ------------------------------------------------CCcceEEeccCcCceEeCccccC-CCcccccC
Q 042791 671 ------------------------------------------------LPLEKLVIDDLKSVKSVGNEFLG-IEENIIAF 701 (761)
Q Consensus 671 ------------------------------------------------lpl~~l~l~~l~~L~~~~~~~~~-~~~~~~~~ 701 (761)
.|...-.+.+++.|++++|.+++ +|..++.+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence 00011123567788999999997 89899999
Q ss_pred Cccceeeccccccccc----CCCCCccceEeeecCCCCcCCCcccCCCCCccEEEEecCC
Q 042791 702 PKLKYLKIWATEELEE----TTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWGCP 757 (761)
Q Consensus 702 ~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 757 (761)
++|+.|+|++|..... ++.+++|++|++++|+..+.+|..+.++++|++|+|++|+
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 9999999999987644 5679999999999999888999999999999999999995
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=7.3e-28 Score=270.64 Aligned_cols=362 Identities=14% Similarity=0.118 Sum_probs=231.6
Q ss_pred CCceEEEEEeecCCCC------------------Cccccc--CCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEE
Q 042791 373 GVKVRHLGLNFQRGAS------------------FPMSFF--EFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRAL 432 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 432 (761)
..+++.++++.+.+.. +|+.+. ++++|++|++++|.+. +.+| ..+.++++|++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~-----~~~p-~~l~~l~~L~~L 278 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL-----TKLP-TFLKALPEMQLI 278 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC-----SSCC-TTTTTCSSCCEE
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC-----ccCh-HHHhcCCCCCEE
Confidence 4677888888888777 888877 8888888888887642 2333 236778888888
Q ss_pred eecccc-ccCCccccccccccccchhcc------cccCccccCCcCCccCch--hhhccCCCcEEecCCccCcccccccc
Q 042791 433 VISQFY-ISGSHHEANRIKEIPENVGKL------IHLKYLNLSELGIERLPE--TLCELYNLQKLDIRRCRNLRELPAGI 503 (761)
Q Consensus 433 ~l~~~~-~~~~~~~~~~l~~lp~~~~~l------~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~~ 503 (761)
++++|. +++. .+|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|...+.+| .+
T Consensus 279 ~Ls~n~~l~~~--------~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 279 NVACNRGISGE--------QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp ECTTCTTSCHH--------HHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred ECcCCCCCccc--------cchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence 888665 4320 366666655 778888888888777777 77788888888888777555777 67
Q ss_pred cccccccEeecCCccccccccccCCCCCC-CcccCceeecCccCCCCccCcc--cccCccCCceEEEcCCC-CCC-----
Q 042791 504 GKLMNMRTLLNGETYALKYMPIGISKLTN-LRTLDRFVVGGGVDGSNTCRLE--SLKNLQLRGKCSIEGLS-NVS----- 574 (761)
Q Consensus 504 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~-~~~----- 574 (761)
..+++|++|++++|.+. .+|..+..+++ |+.|++++|.....+..+..+. +|+.|+++++......+ .+.
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 77778888888777554 77777777777 7777777777666655544433 66777666542211110 011
Q ss_pred --ChhHHhhc-------------cccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCC
Q 042791 575 --HVDEAERL-------------QLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGN 639 (761)
Q Consensus 575 --~~~~l~~~-------------~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 639 (761)
....+..+ .+..+++|+.|+++.|.+.......... ....+..+++|+.|++++|.+.
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-------~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD-------ENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE-------TTEECTTGGGCCEEECCSSCCC
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc-------ccccccccCCccEEECcCCcCC
Confidence 11111111 1223566777777766643211100000 0000112238899999999888
Q ss_pred CCCchhh--hhcCCcEEEeecCCCCCCCC-CCCCCC-cceEEeccCcCceEeCccccC-CCcccccCCccceeecccccc
Q 042791 640 IFPKWLT--LLTNLRNLTLASCVNCEHLP-PLGKLP-LEKLVIDDLKSVKSVGNEFLG-IEENIIAFPKLKYLKIWATEE 714 (761)
Q Consensus 640 ~~p~~~~--~l~~L~~L~l~~~~~~~~~~-~~~~lp-l~~l~l~~l~~L~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~ 714 (761)
.+|..+. .+++|+.|++++|.... +| .++.++ ++.+.+.+.+ ++++|.+.+ +|..+..+++|++|++++|..
T Consensus 502 ~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~--~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 502 KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR--DAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB--CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc--ccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 8888886 89999999999986433 33 223333 4444443322 114566665 888899999999999999988
Q ss_pred cccCC-CCCccceEeeecCCCCcC-----CCcc---cCCCCCccEEEEecCCCCC
Q 042791 715 LEETT-DIPRLSSLTIWYCPKLKV-----LPDY---LLQTTALQELRIWGCPILE 760 (761)
Q Consensus 715 ~~~~~-~l~~L~~L~l~~~~~l~~-----l~~~---l~~l~~L~~L~l~~c~~l~ 760 (761)
..... -.++|++|++++|+.... .|.. ...+...+..++.+|+.|+
T Consensus 579 ~~ip~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 579 RKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CBCCSCCCTTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CccCHhHhCcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 43321 348999999999976531 1111 2234445667899999875
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=7.3e-28 Score=274.45 Aligned_cols=342 Identities=14% Similarity=0.078 Sum_probs=262.5
Q ss_pred CCCceEEEEEeecCCCC------------------Cccccc--CCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceE
Q 042791 372 SGVKVRHLGLNFQRGAS------------------FPMSFF--EFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRA 431 (761)
Q Consensus 372 ~~~~~~~l~~~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 431 (761)
...+++.|+++.+.+.. +|+.+. ++++|+.|+|++|.+. +.+| ..+.++++|+.
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~-----~~iP-~~l~~L~~L~~ 519 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM-----TQLP-DFLYDLPELQS 519 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC-----CSCC-GGGGGCSSCCE
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC-----ccCh-HHHhCCCCCCE
Confidence 35689999999999988 999877 9999999999998752 3334 34789999999
Q ss_pred Eeecccc-ccCCccccccccccccchhccc-------ccCccccCCcCCccCch--hhhccCCCcEEecCCccCcccccc
Q 042791 432 LVISQFY-ISGSHHEANRIKEIPENVGKLI-------HLKYLNLSELGIERLPE--TLCELYNLQKLDIRRCRNLRELPA 501 (761)
Q Consensus 432 L~l~~~~-~~~~~~~~~~l~~lp~~~~~l~-------~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~ 501 (761)
|++++|. +++. .+|..++.+. +|++|++++|.++.+|. .++++++|++|++++|... .+|
T Consensus 520 L~Ls~N~~lsg~--------~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 520 LNIACNRGISAA--------QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp EECTTCTTSCHH--------HHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred EECcCCCCcccc--------cchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence 9999875 5420 3676666665 99999999999999999 9999999999999999855 899
Q ss_pred cccccccccEeecCCccccccccccCCCCCC-CcccCceeecCccCCCCccCcc--cccCccCCceEEEcCCCCCCChhH
Q 042791 502 GIGKLMNMRTLLNGETYALKYMPIGISKLTN-LRTLDRFVVGGGVDGSNTCRLE--SLKNLQLRGKCSIEGLSNVSHVDE 578 (761)
Q Consensus 502 ~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~~~ 578 (761)
.+..+++|++|++++|.+. .+|..+..+++ |+.|++++|.....+..+..+. +|+.|+++++.....++.+..
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~--- 665 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC--- 665 (876)
T ss_dssp CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS---
T ss_pred hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchh---
Confidence 7999999999999999766 89999999999 9999999998777776666554 489999886532222121110
Q ss_pred HhhccccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhh--------hcC
Q 042791 579 AERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTL--------LTN 650 (761)
Q Consensus 579 l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~--------l~~ 650 (761)
......+.+|+.|+++.|.+... ... .+..+++|+.|++++|.+..+|.++.. +++
T Consensus 666 --~l~~~~~~~L~~L~Ls~N~L~~l-----------p~~---~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 666 --SMDDYKGINASTVTLSYNEIQKF-----------PTE---LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp --CTTTCCCCCEEEEECCSSCCCSC-----------CHH---HHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGG
T ss_pred --hhccccCCCcCEEEccCCcCCcc-----------CHH---HHccCCCCCEEECCCCcCCccChHHhccccccccccCC
Confidence 01111345788899888875311 001 122567899999999988888876543 349
Q ss_pred CcEEEeecCCCCCCCCCCCCCCcceE--EeccCcCceEeCccccCCCcccccCCccceeeccccc------cccc----C
Q 042791 651 LRNLTLASCVNCEHLPPLGKLPLEKL--VIDDLKSVKSVGNEFLGIEENIIAFPKLKYLKIWATE------ELEE----T 718 (761)
Q Consensus 651 L~~L~l~~~~~~~~~~~~~~lpl~~l--~l~~l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~~~~----~ 718 (761)
|+.|+|++|.. +. +|.... .+.+|+.|++++|.++++|..+..+++|+.|+|++|+ .... +
T Consensus 730 L~~L~Ls~N~L-~~------lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 730 LTTIDLRFNKL-TS------LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp CCEEECCSSCC-CC------CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred ccEEECCCCCC-cc------chHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence 99999999953 23 332222 4567778888889999998888999999999998743 3322 5
Q ss_pred CCCCccceEeeecCCCCcCCCcccCCCCCccEEEEecCCCC
Q 042791 719 TDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWGCPIL 759 (761)
Q Consensus 719 ~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l 759 (761)
..+++|+.|+|++|.. +.+|..+. ++|+.|+|++|+..
T Consensus 803 ~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred hcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence 5789999999999976 88988764 79999999999864
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=5.3e-28 Score=272.49 Aligned_cols=134 Identities=21% Similarity=0.227 Sum_probs=87.9
Q ss_pred CCceEEEEEeecCCCCCcc-cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPM-SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKE 451 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 451 (761)
...++.++++.+.+..+++ .+.++++|++|++++|.+. .+++..|.++++|++|++++|.+.+ .
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------~i~~~~~~~l~~L~~L~Ls~n~l~~---------~ 95 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE------TIEDKAWHGLHHLSNLILTGNPIQS---------F 95 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC------EECTTTTTTCTTCCEEECTTCCCCC---------C
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc------ccCHHHhhchhhcCEeECCCCcccc---------c
Confidence 3567778888777776654 6777888888888777642 2333346777788888887665543 2
Q ss_pred cccchhcccccCccccCCcCCccCc-hhhhccCCCcEEecCCccCcc-cccccccccccccEeecCCccccc
Q 042791 452 IPENVGKLIHLKYLNLSELGIERLP-ETLCELYNLQKLDIRRCRNLR-ELPAGIGKLMNMRTLLNGETYALK 521 (761)
Q Consensus 452 lp~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~ 521 (761)
.|..|+.+++|++|++++|.++.+| ..++++++|++|++++|.... .+|..+.++++|++|++++|....
T Consensus 96 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 3556666777777777777666555 456666777777777666443 456666667777777766665443
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.3e-27 Score=272.39 Aligned_cols=338 Identities=13% Similarity=0.134 Sum_probs=261.5
Q ss_pred CCcccccCCCceeEEEEcccCCCCCCC------------chhhHHHH-hccCCcceEEeeccccccCCcccccccccccc
Q 042791 388 SFPMSFFEFDRLRSLLIYDRSYSNGSL------------NGSILQEL-FSKLACLRALVISQFYISGSHHEANRIKEIPE 454 (761)
Q Consensus 388 ~~~~~~~~~~~L~~L~l~~~~~~~~~~------------~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~ 454 (761)
.+|..+.++++|+.|+|++|.+....+ .+.+|..+ |.++++|++|+|++|.+.+ .+|.
T Consensus 439 ~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~---------~iP~ 509 (876)
T 4ecn_A 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT---------QLPD 509 (876)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC---------SCCG
T ss_pred chhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc---------cChH
Confidence 378899999999999999998643100 00244442 3489999999999887766 7899
Q ss_pred chhcccccCccccCCcC-Ccc--CchhhhccC-------CCcEEecCCccCcccccc--cccccccccEeecCCcccccc
Q 042791 455 NVGKLIHLKYLNLSELG-IER--LPETLCELY-------NLQKLDIRRCRNLRELPA--GIGKLMNMRTLLNGETYALKY 522 (761)
Q Consensus 455 ~~~~l~~L~~L~l~~~~-i~~--lp~~~~~l~-------~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~ 522 (761)
.++++++|++|++++|. ++. +|..++++. +|++|++++|... .+|. .+..+++|++|++++|.+. .
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~ 587 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-H 587 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-B
T ss_pred HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-c
Confidence 99999999999999998 884 898888776 9999999999955 8998 8999999999999999766 8
Q ss_pred ccccCCCCCCCcccCceeecCccCCCCccCccc-ccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeeccc
Q 042791 523 MPIGISKLTNLRTLDRFVVGGGVDGSNTCRLES-LKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVV 601 (761)
Q Consensus 523 ~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~ 601 (761)
+| .++.+++|+.|++++|.....+..+..+++ |+.|+++++. +..++.. .......+|+.|+++.|.+.
T Consensus 588 lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~--------~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 588 LE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNI--------FNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp CC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCSCCSC--------CCTTCSSCEEEEECCSSCTT
T ss_pred ch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCcCchh--------hhccccCCCCEEECcCCcCC
Confidence 88 899999999999999998888888889998 9999999753 3333221 11122345889999988753
Q ss_pred CCCCCcCcccchhHHHHHhhCC--CCCCCceEEEEeeCCCCCCchhh-hhcCCcEEEeecCCCCCCCCCCCCCCcc--eE
Q 042791 602 DGEGEEGRRKNEKDKQLLEALQ--PPLNVEELWIIFYGGNIFPKWLT-LLTNLRNLTLASCVNCEHLPPLGKLPLE--KL 676 (761)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~~~~~~~lpl~--~l 676 (761)
..... +...+. .+++|+.|++++|.+..+|..+. .+++|+.|+|++|.. ..+|....-... .-
T Consensus 658 g~ip~-----------l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~ 725 (876)
T 4ecn_A 658 SEGRN-----------ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYK 725 (876)
T ss_dssp TTSSS-----------CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCT
T ss_pred Ccccc-----------chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC-CccChHHhcccccccc
Confidence 21100 000111 34589999999999999998765 789999999999953 344421100000 01
Q ss_pred EeccCcCceEeCccccCCCcccc--cCCccceeeccccccccc---CCCCCccceEeeec------CCCCcCCCcccCCC
Q 042791 677 VIDDLKSVKSVGNEFLGIEENII--AFPKLKYLKIWATEELEE---TTDIPRLSSLTIWY------CPKLKVLPDYLLQT 745 (761)
Q Consensus 677 ~l~~l~~L~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~---~~~l~~L~~L~l~~------~~~l~~l~~~l~~l 745 (761)
++.+|+.|++++|.++.+|..+. .+++|+.|+|++|..... +..+++|+.|++++ |...+.+|..+.++
T Consensus 726 nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred ccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 23378888899999999988776 899999999999977553 55789999999987 65677899999999
Q ss_pred CCccEEEEecCCC
Q 042791 746 TALQELRIWGCPI 758 (761)
Q Consensus 746 ~~L~~L~l~~c~~ 758 (761)
++|+.|+|++|+.
T Consensus 806 ~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 806 PSLIQLQIGSNDI 818 (876)
T ss_dssp SSCCEEECCSSCC
T ss_pred CCCCEEECCCCCC
Confidence 9999999999975
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=3e-27 Score=272.20 Aligned_cols=342 Identities=20% Similarity=0.169 Sum_probs=258.4
Q ss_pred CCCceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccc
Q 042791 372 SGVKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKE 451 (761)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 451 (761)
...+++.++++.+.+...++.+..+++|++|++++|.+. +. .+..+.++++|++|++++|.+.+ .
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~-----~~-~~~~l~~l~~L~~L~Ls~n~l~~---------~ 262 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS-----GD-FSRAISTCTELKLLNISSNQFVG---------P 262 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCC-----SC-HHHHTTTCSSCCEEECCSSCCEE---------S
T ss_pred cCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCC-----Cc-ccHHHhcCCCCCEEECCCCcccC---------c
Confidence 456888999999888765556889999999999888752 23 34457899999999999887764 3
Q ss_pred cccchhcccccCccccCCcCCc-cCchhhhcc-CCCcEEecCCccCcccccccccccccccEeecCCcccccccccc-CC
Q 042791 452 IPENVGKLIHLKYLNLSELGIE-RLPETLCEL-YNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIG-IS 528 (761)
Q Consensus 452 lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l-~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-l~ 528 (761)
+|.. .+++|++|++++|.++ .+|..+... ++|++|++++|...+.+|..+..+++|++|++++|.....+|.. +.
T Consensus 263 ~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~ 340 (768)
T 3rgz_A 263 IPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340 (768)
T ss_dssp CCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT
T ss_pred cCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh
Confidence 4432 6888999999999887 788877664 89999999999877788888899999999999999877788866 88
Q ss_pred CCCCCcccCceeecCc-cCCCCccCcc-cccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCC
Q 042791 529 KLTNLRTLDRFVVGGG-VDGSNTCRLE-SLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGE 606 (761)
Q Consensus 529 ~l~~L~~L~l~~~~~~-~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~ 606 (761)
.+++|+.|++++|... ..+..+..+. +|+.|+++++......... .....+++|+.|+++.|.+.+
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~--------~~~~~~~~L~~L~L~~n~l~~---- 408 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN--------LCQNPKNTLQELYLQNNGFTG---- 408 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT--------TTCSTTCCCCEEECCSSEEEE----
T ss_pred cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh--------hhhcccCCccEEECCCCcccc----
Confidence 8999999998888754 5566666776 8888888876443322110 011125678888887776421
Q ss_pred cCcccchhHHHHHhhCCCCCCCceEEEEeeCCC-CCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCce
Q 042791 607 EGRRKNEKDKQLLEALQPPLNVEELWIIFYGGN-IFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVK 685 (761)
Q Consensus 607 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~ 685 (761)
..+..+..+++|+.|++++|... .+|..+..+++|+.|++++|.....+| -....+.+++.|+
T Consensus 409 ----------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p------~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 409 ----------KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP------QELMYVKTLETLI 472 (768)
T ss_dssp ----------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC------GGGGGCTTCCEEE
T ss_pred ----------ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC------HHHcCCCCceEEE
Confidence 12234556778999999888764 568888889999999999887443333 2222345677777
Q ss_pred EeCccccC-CCcccccCCccceeeccccccccc----CCCCCccceEeeecCCCCcCCCcccCCCCCccEEEEecCCC
Q 042791 686 SVGNEFLG-IEENIIAFPKLKYLKIWATEELEE----TTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWGCPI 758 (761)
Q Consensus 686 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~ 758 (761)
+.+|.+.+ +|..+.++++|++|++++|..... +..+++|++|++++|...+.+|..+.++++|+.|++++|+.
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 77888886 777788899999999999877644 55788999999999988888888888999999999998853
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=1e-26 Score=262.07 Aligned_cols=354 Identities=16% Similarity=0.066 Sum_probs=219.2
Q ss_pred CCceEEEEEeecCCCCC-cccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccc
Q 042791 373 GVKVRHLGLNFQRGASF-PMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKE 451 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 451 (761)
...++.++++.+.+..+ |.+|.++++|++|++++|.+. .+.+..|.++++|++|++++|.+.+ .
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l~~---------~ 96 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY------WIHEDTFQSQHRLDTLVLTANPLIF---------M 96 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC------EECTTTTTTCTTCCEEECTTCCCSE---------E
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc------eeChhhccCccccCeeeCCCCcccc---------c
Confidence 45789999999999887 558899999999999998752 2334457899999999999877654 4
Q ss_pred cccchhcccccCccccCCcCCccC-chhhhccCCCcEEecCCccCccc-ccccccccccccEeecCCccccccccccCCC
Q 042791 452 IPENVGKLIHLKYLNLSELGIERL-PETLCELYNLQKLDIRRCRNLRE-LPAGIGKLMNMRTLLNGETYALKYMPIGISK 529 (761)
Q Consensus 452 lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 529 (761)
.|..++.+++|++|++++|.++.+ |..+.++++|++|++++|..... .|. +..+++|++|++++|.+....|..++.
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSS 175 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhh
Confidence 567788999999999999999876 56788999999999999985542 344 555999999999999777666777888
Q ss_pred CCCCc--ccCceeecCccCCCCccCcccccCccCCceEEEc-----------------CCCC-----C------------
Q 042791 530 LTNLR--TLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIE-----------------GLSN-----V------------ 573 (761)
Q Consensus 530 l~~L~--~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~-----~------------ 573 (761)
+++|+ .|++++|.....+.......+|+.|+++++..+. .+.. +
T Consensus 176 l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~ 255 (606)
T 3t6q_A 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255 (606)
T ss_dssp TTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred hcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence 88888 6777777655554444444555555554432000 0000 0
Q ss_pred --------CChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCC-Cch
Q 042791 574 --------SHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIF-PKW 644 (761)
Q Consensus 574 --------~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~ 644 (761)
..+..+....+..+++|+.|+++.|.+.. ++..+..+++|+.|++++|....+ |..
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------lp~~l~~l~~L~~L~l~~n~l~~~~~~~ 320 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE---------------LPSGLVGLSTLKKLVLSANKFENLCQIS 320 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC---------------CCSSCCSCTTCCEEECTTCCCSBGGGGC
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccCC---------------CChhhcccccCCEEECccCCcCcCchhh
Confidence 00011111124456667777776665431 122334455666666666555443 345
Q ss_pred hhhhcCCcEEEeecCCCCCCCCC--CCCCC-cceEEec------------------cCcCceEeCccccC-CCcccccCC
Q 042791 645 LTLLTNLRNLTLASCVNCEHLPP--LGKLP-LEKLVID------------------DLKSVKSVGNEFLG-IEENIIAFP 702 (761)
Q Consensus 645 ~~~l~~L~~L~l~~~~~~~~~~~--~~~lp-l~~l~l~------------------~l~~L~~~~~~~~~-~~~~~~~~~ 702 (761)
+..+++|+.|++++|.....++. ++.++ ++.+++. +++.|++.+|.+.. .|..+..++
T Consensus 321 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 400 (606)
T 3t6q_A 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400 (606)
T ss_dssp GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT
T ss_pred hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc
Confidence 55556666666665543333221 22333 3333222 24445555555554 344455666
Q ss_pred ccceeeccccccccc-----CCCCCccceEeeecCCCCcCCCcccCCCCCccEEEEecCC
Q 042791 703 KLKYLKIWATEELEE-----TTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWGCP 757 (761)
Q Consensus 703 ~L~~L~l~~~~~~~~-----~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 757 (761)
+|++|++++|..... +..+++|++|++++|......|..+..+++|++|++++|+
T Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 666666666654322 3345566666666665444444445555666666665554
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.1e-26 Score=258.61 Aligned_cols=355 Identities=19% Similarity=0.191 Sum_probs=224.4
Q ss_pred CceEEEEEeecCCCCC-cccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccc
Q 042791 374 VKVRHLGLNFQRGASF-PMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEI 452 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 452 (761)
..++.++++.+.+..+ |..+..+++|++|++++|.+. .+++..|.++++|++|++++|.+.+ ..
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~ 90 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN------TIEGDAFYSLGSLEHLDLSDNHLSS---------LS 90 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCCCS---------CC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC------ccChhhccccccCCEEECCCCccCc---------cC
Confidence 5788999999888776 457889999999999888753 2333447888999999999776654 23
Q ss_pred ccchhcccccCccccCCcCCcc--CchhhhccCCCcEEecCCccCccccc-ccccccccccEeecCCccccccccccCCC
Q 042791 453 PENVGKLIHLKYLNLSELGIER--LPETLCELYNLQKLDIRRCRNLRELP-AGIGKLMNMRTLLNGETYALKYMPIGISK 529 (761)
Q Consensus 453 p~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 529 (761)
|..++.+++|++|++++|.++. .|..+.++++|++|++++|...+.+| ..+..+++|++|++++|......|..++.
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 3448888999999999998874 46778889999999999888666666 46788999999999988877777777766
Q ss_pred CCCCcccCceeecCccCCCCc-cCcccccCccCCceEE------------------------------------------
Q 042791 530 LTNLRTLDRFVVGGGVDGSNT-CRLESLKNLQLRGKCS------------------------------------------ 566 (761)
Q Consensus 530 l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~l~~~~~------------------------------------------ 566 (761)
+++|+.|++..+.....+... ..+++|+.|+++++..
T Consensus 171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 665555555444322111110 1122233332222110
Q ss_pred ------------EcCCCC--------CCChhHHhhccc------------------------------------------
Q 042791 567 ------------IEGLSN--------VSHVDEAERLQL------------------------------------------ 584 (761)
Q Consensus 567 ------------~~~~~~--------~~~~~~l~~~~l------------------------------------------ 584 (761)
+..+.. +..+..+..+.+
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~ 330 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH
Confidence 000000 000011100000
Q ss_pred cccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCCC---chhhhhcCCcEEEeecCCC
Q 042791 585 YNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFP---KWLTLLTNLRNLTLASCVN 661 (761)
Q Consensus 585 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p---~~~~~l~~L~~L~l~~~~~ 661 (761)
..+++|+.|+++.|.+.+ ........+..+++|+.|++++|....++ ..+..+++|++|++++|.
T Consensus 331 ~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~- 398 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVE-----------EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT- 398 (549)
T ss_dssp HHCTTCCEEECCSSCCCH-----------HHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-
T ss_pred hcCccccEEEccCCcccc-----------ccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-
Confidence 123334444443333210 00011223456677888888888776654 346778888888888884
Q ss_pred CCCCCC-CCCCC-cceEEec-------------cCcCceEeCccccCCCcccccCCccceeeccccccccc--CCCCCcc
Q 042791 662 CEHLPP-LGKLP-LEKLVID-------------DLKSVKSVGNEFLGIEENIIAFPKLKYLKIWATEELEE--TTDIPRL 724 (761)
Q Consensus 662 ~~~~~~-~~~lp-l~~l~l~-------------~l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~l~~L 724 (761)
++.+|. ++.++ ++.+.+. +++.|++++|.+++.+ ..+++|++|++++|..... ...+++|
T Consensus 399 l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~~~~l~~L 475 (549)
T 2z81_A 399 FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDASLFPVL 475 (549)
T ss_dssp CCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCCGGGCTTC
T ss_pred CccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCCcccCccC
Confidence 334442 33444 5555553 3555666777766643 4678888888888866532 3357889
Q ss_pred ceEeeecCCCCcCCCcccCCCCCccEEEEecCCC
Q 042791 725 SSLTIWYCPKLKVLPDYLLQTTALQELRIWGCPI 758 (761)
Q Consensus 725 ~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~ 758 (761)
++|++++|+..+..|..+..+++|+.|++++|+.
T Consensus 476 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred CEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 9999998876655555678889999999999874
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=4.3e-26 Score=251.71 Aligned_cols=125 Identities=15% Similarity=0.135 Sum_probs=74.6
Q ss_pred CceEEEEEeecCCCCCc-ccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccc
Q 042791 374 VKVRHLGLNFQRGASFP-MSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEI 452 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 452 (761)
.+++.++++.+.+..++ ..+..+++|++|++++|.+. .+.+..|.++++|++|++++|.+. .+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~N~l~----------~l 84 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ------YLDISVFKFNQELEYLDLSHNKLV----------KI 84 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC------EEEGGGGTTCTTCCEEECCSSCCC----------EE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccC------CcChHHhhcccCCCEEecCCCcee----------ec
Confidence 46666666666666554 35666666666666666542 222333566666666666644332 45
Q ss_pred ccchhcccccCccccCCcCCcc--CchhhhccCCCcEEecCCccCcccccccccccccc--cEeecCCccc
Q 042791 453 PENVGKLIHLKYLNLSELGIER--LPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNM--RTLLNGETYA 519 (761)
Q Consensus 453 p~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L--~~L~l~~~~~ 519 (761)
|.. .+++|++|++++|.++. +|..++++++|++|++++|.... ..+..+++| ++|++++|..
T Consensus 85 p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 544 56666777777666663 45666666777777776665333 235555555 6666666655
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=1.1e-25 Score=253.70 Aligned_cols=163 Identities=18% Similarity=0.106 Sum_probs=131.1
Q ss_pred EEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchh
Q 042791 378 HLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVG 457 (761)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~ 457 (761)
.+..+...+..+|..+. ++++.|++++|.+. .+++..|.++++|++|++++|.+.+ ..|..|+
T Consensus 15 ~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~---------i~~~~~~ 77 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLK------ILKSYSFSNFSELQWLDLSRCEIET---------IEDKAWH 77 (606)
T ss_dssp EEECTTSCCSSCCTTSC--TTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTCCCCE---------ECTTTTT
T ss_pred ceEccCCCcccCCCCCC--CCcCEEECCCCCcC------EeChhhccCCccCcEEeCCCCcccc---------cCHHHhh
Confidence 56666777888887664 88999999999863 3344457899999999999776654 3466789
Q ss_pred cccccCccccCCcCCccC-chhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccc-cccccCCCCCCCcc
Q 042791 458 KLIHLKYLNLSELGIERL-PETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALK-YMPIGISKLTNLRT 535 (761)
Q Consensus 458 ~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~ 535 (761)
.+++|++|++++|.++.+ |..|+++++|++|++++|......|..++.+++|++|++++|.... .+|..++.+++|++
T Consensus 78 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 157 (606)
T 3vq2_A 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157 (606)
T ss_dssp TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence 999999999999999977 7889999999999999998555555779999999999999997765 67999999999999
Q ss_pred cCceeecCccCC-CCccCccccc
Q 042791 536 LDRFVVGGGVDG-SNTCRLESLK 557 (761)
Q Consensus 536 L~l~~~~~~~~~-~~~~~l~~L~ 557 (761)
|++++|.....+ ..+..+.+|+
T Consensus 158 L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 158 VDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp EECCSSCCCEECTTTTHHHHHCT
T ss_pred EEccCCcceecChhhhhhhhccc
Confidence 999988755443 3344455444
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=1.3e-25 Score=252.87 Aligned_cols=360 Identities=16% Similarity=0.095 Sum_probs=177.3
Q ss_pred CCceEEEEEeecCCCCC-cccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCc--------
Q 042791 373 GVKVRHLGLNFQRGASF-PMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSH-------- 443 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------- 443 (761)
..+++.++++.+.+..+ |.+|..+++|++|++++|.+. .+++..+.++++|++|++++|.+.+..
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI------FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS------EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCccc------ccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 34556666666555544 345566666666666655432 112222455555555555555443310
Q ss_pred ------ccccccccc--ccchhcccccCccccCCcCCccC-chhhhccCCCc--EEecCCccCcccccccccccc-----
Q 042791 444 ------HEANRIKEI--PENVGKLIHLKYLNLSELGIERL-PETLCELYNLQ--KLDIRRCRNLRELPAGIGKLM----- 507 (761)
Q Consensus 444 ------~~~~~l~~l--p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~--~L~l~~~~~~~~lp~~~~~l~----- 507 (761)
..++.+..+ |. +..+++|++|++++|.++.+ |..++.+++|+ .|++++|......|..+. ..
T Consensus 130 ~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L 207 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSL 207 (606)
T ss_dssp TCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEE
T ss_pred cccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hcccccc
Confidence 001111122 22 22356666666666666544 34456666666 566666553332222111 11
Q ss_pred -----------------------------------------------cccEeecCCccccccccccCCCCCCCcccCcee
Q 042791 508 -----------------------------------------------NMRTLLNGETYALKYMPIGISKLTNLRTLDRFV 540 (761)
Q Consensus 508 -----------------------------------------------~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 540 (761)
+|+.|++++|......+..++.+++|+.|++++
T Consensus 208 ~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 287 (606)
T 3t6q_A 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287 (606)
T ss_dssp ECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT
T ss_pred ccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccC
Confidence 344444444433333333466677777777777
Q ss_pred ecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCc----------Ccc
Q 042791 541 VGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEE----------GRR 610 (761)
Q Consensus 541 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~----------~~~ 610 (761)
+.....+..+..+++|+.|+++++. +... ....+..+++|+.|+++.|.+....... ...
T Consensus 288 n~l~~lp~~l~~l~~L~~L~l~~n~-l~~~---------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 288 THLSELPSGLVGLSTLKKLVLSANK-FENL---------CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp SCCSCCCSSCCSCTTCCEEECTTCC-CSBG---------GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred CccCCCChhhcccccCCEEECccCC-cCcC---------chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 7666666666677777777776532 1111 1122334445555555444321100000 000
Q ss_pred cch---hHHHHHhhCCCCCCCceEEEEeeCCCCC-CchhhhhcCCcEEEeecCCCCCCCCC--CCCCCcceEEeccCcCc
Q 042791 611 KNE---KDKQLLEALQPPLNVEELWIIFYGGNIF-PKWLTLLTNLRNLTLASCVNCEHLPP--LGKLPLEKLVIDDLKSV 684 (761)
Q Consensus 611 ~~~---~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~--~~~lpl~~l~l~~l~~L 684 (761)
... ........+..+++|+.|++++|....+ |..+..+++|+.|++++|......+. ++.++ +++.|
T Consensus 358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-------~L~~L 430 (606)
T 3t6q_A 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH-------LLKVL 430 (606)
T ss_dssp CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT-------TCCEE
T ss_pred CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc-------cCCEE
Confidence 000 0000012344556666777666654333 45566666777777766653322221 22333 34445
Q ss_pred eEeCccccC-CCcccccCCccceeecccccccc-------cCCCCCccceEeeecCCCCcCCCcccCCCCCccEEEEecC
Q 042791 685 KSVGNEFLG-IEENIIAFPKLKYLKIWATEELE-------ETTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWGC 756 (761)
Q Consensus 685 ~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~-------~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c 756 (761)
++.+|.+.. .|..+..+++|++|++++|.... .+..+++|++|++++|...+..|..+..+++|++|++++|
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 555565555 34445666667777776665433 1345666666666666555445555666666666666666
Q ss_pred C
Q 042791 757 P 757 (761)
Q Consensus 757 ~ 757 (761)
+
T Consensus 511 ~ 511 (606)
T 3t6q_A 511 R 511 (606)
T ss_dssp C
T ss_pred c
Confidence 4
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=3.4e-26 Score=248.14 Aligned_cols=356 Identities=15% Similarity=0.058 Sum_probs=245.1
Q ss_pred CCceEEEEEeecCCCCC-cccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccc
Q 042791 373 GVKVRHLGLNFQRGASF-PMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKE 451 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 451 (761)
..+++.++++.+.+..+ |..+.++++|++|++++|.+. +.+++..|.++++|++|++++|.+.+ .
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-----~~i~~~~~~~l~~L~~L~Ls~n~l~~---------~ 94 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-----LVIRNNTFRGLSSLIILKLDYNQFLQ---------L 94 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT-----CEECTTTTTTCTTCCEEECTTCTTCE---------E
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCccc-----ceECcccccccccCCEEeCCCCccCc---------c
Confidence 46788999999888876 567889999999999888642 23344457888999999999776654 3
Q ss_pred cccchhcccccCccccCCcCCcc-Cchh--hhccCCCcEEecCCccCccccccc-ccccccccEeecCCccccccccccC
Q 042791 452 IPENVGKLIHLKYLNLSELGIER-LPET--LCELYNLQKLDIRRCRNLRELPAG-IGKLMNMRTLLNGETYALKYMPIGI 527 (761)
Q Consensus 452 lp~~~~~l~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l 527 (761)
.|..++.+++|++|++++|.++. .|.. +..+++|++|++++|......|.. +..+++|++|++++|.+....|..+
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 47778889999999999998874 4444 888999999999998866555665 7889999999999998777777666
Q ss_pred CCC--CCCcccCceeecCccCCCC---------ccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEE
Q 042791 528 SKL--TNLRTLDRFVVGGGVDGSN---------TCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLV 596 (761)
Q Consensus 528 ~~l--~~L~~L~l~~~~~~~~~~~---------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~ 596 (761)
..+ .+|+.|++..+.....+.. ...+++|+.|+++++..... ............+++.|.++
T Consensus 175 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-------~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES-------MAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH-------HHHHHHHHTTTCCEEEEECT
T ss_pred hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc-------chhhhhccccccceeeEeec
Confidence 665 5777777777765444322 23456788888876421110 00001111223667777766
Q ss_pred eecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCC-CchhhhhcCCcEEEeecCCCCCCCC-CCCCCCcc
Q 042791 597 FGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIF-PKWLTLLTNLRNLTLASCVNCEHLP-PLGKLPLE 674 (761)
Q Consensus 597 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~lpl~ 674 (761)
.+................... ... ...++|+.|+++++....+ |.++..+++|++|++++|......+ .++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---- 321 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFT-FKG-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG---- 321 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTT-TGG-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT----
T ss_pred cccccccccchhhhccCcccc-ccc-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC----
Confidence 554222110000000000000 000 1236899999999887654 7788999999999999996433222 2333
Q ss_pred eEEeccCcCceEeCccccC-CCcccccCCccceeeccccccccc----CCCCCccceEeeecCCCCcCCCcccCCCCCcc
Q 042791 675 KLVIDDLKSVKSVGNEFLG-IEENIIAFPKLKYLKIWATEELEE----TTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQ 749 (761)
Q Consensus 675 ~l~l~~l~~L~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~ 749 (761)
+.+++.|++++|.+.. .+..+.++++|++|++++|..... +..+++|++|++++|......+..+..+++|+
T Consensus 322 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 322 ---LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp ---CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ---cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence 3466777777788877 466678999999999999977654 56789999999999975543334467899999
Q ss_pred EEEEecCCC
Q 042791 750 ELRIWGCPI 758 (761)
Q Consensus 750 ~L~l~~c~~ 758 (761)
.|++++|+.
T Consensus 399 ~L~l~~N~l 407 (455)
T 3v47_A 399 KIWLHTNPW 407 (455)
T ss_dssp EEECCSSCB
T ss_pred EEEccCCCc
Confidence 999999974
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=251.29 Aligned_cols=176 Identities=19% Similarity=0.206 Sum_probs=133.1
Q ss_pred CCceEEEEEeecCCCCCcc-cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPM-SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKE 451 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 451 (761)
...++.++++.+.+..++. +|..+++|++|++++|.+. .+++..|.++++|++|++++|.+.. .
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------~i~~~~~~~l~~L~~L~L~~n~l~~---------~ 91 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------TIEDGAYQSLSHLSTLILTGNPIQS---------L 91 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC------EECTTTTTTCTTCCEEECTTCCCCE---------E
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC------ccCcccccCchhCCEEeCcCCcCCc---------c
Confidence 4578899999998887754 7899999999999998753 3344457889999999999776553 2
Q ss_pred cccchhcccccCccccCCcCCccCch-hhhccCCCcEEecCCccCcc-cccccccccccccEeecCCccccccccccCCC
Q 042791 452 IPENVGKLIHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLR-ELPAGIGKLMNMRTLLNGETYALKYMPIGISK 529 (761)
Q Consensus 452 lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 529 (761)
.|..|+.+++|++|++++|.++.+|. .++++++|++|++++|.... .+|..+.++++|++|++++|......|..++.
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 171 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH
T ss_pred CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc
Confidence 34678889999999999999888775 58899999999999988554 47888999999999999999776666666777
Q ss_pred CCCC----cccCceeecCccCCCCccCcccccCccCCc
Q 042791 530 LTNL----RTLDRFVVGGGVDGSNTCRLESLKNLQLRG 563 (761)
Q Consensus 530 l~~L----~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 563 (761)
+.+| ..|+++++.....+.......+|+.|++++
T Consensus 172 l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 209 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred hhccchhhhhcccCCCCceecCHHHhccCcceeEeccc
Confidence 7777 667776666544443333333566655543
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=4.2e-26 Score=255.31 Aligned_cols=368 Identities=18% Similarity=0.127 Sum_probs=211.5
Q ss_pred CCCceEEEEEeecCCCCCc-ccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccc
Q 042791 372 SGVKVRHLGLNFQRGASFP-MSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIK 450 (761)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 450 (761)
....++.++++.+.+..++ ..|.++++|++|++++|.+. .+++..|.++++|++|++++|.+..
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~--------- 114 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ------SLALGAFSGLSSLQKLVAVETNLAS--------- 114 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC------EECTTTTTTCTTCCEEECTTSCCCC---------
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC------ccCHhhhcCcccccccccccccccc---------
Confidence 4567889999988888775 46888999999999888752 2333457888999999999766543
Q ss_pred cccc-chhcccccCccccCCcCCcc--CchhhhccCCCcEEecCCccCcccccccccccccc----cEeecCCccccccc
Q 042791 451 EIPE-NVGKLIHLKYLNLSELGIER--LPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNM----RTLLNGETYALKYM 523 (761)
Q Consensus 451 ~lp~-~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L----~~L~l~~~~~~~~~ 523 (761)
+|. .++.+++|++|++++|.++. +|..++++++|++|++++|......|..+..+++| +.|++++|......
T Consensus 115 -l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~ 193 (570)
T 2z63_A 115 -LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (570)
T ss_dssp -STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred -CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecC
Confidence 433 47788888888888888774 68888888888888888887555555667777777 67777776544333
Q ss_pred cccCCCCCCCcccCceeec-----------------------------------------------------------Cc
Q 042791 524 PIGISKLTNLRTLDRFVVG-----------------------------------------------------------GG 544 (761)
Q Consensus 524 p~~l~~l~~L~~L~l~~~~-----------------------------------------------------------~~ 544 (761)
|..+..+ +|+.|++.++. ..
T Consensus 194 ~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~ 272 (570)
T 2z63_A 194 PGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272 (570)
T ss_dssp TTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEES
T ss_pred HHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhh
Confidence 3222221 23333222210 00
Q ss_pred cCCCCccCcccccCccCCceEEEcCCCC-CCChhHHhhcc----------ccccCCCCcEEEEeecccCCCCC-------
Q 042791 545 VDGSNTCRLESLKNLQLRGKCSIEGLSN-VSHVDEAERLQ----------LYNKKNLLRLHLVFGRVVDGEGE------- 606 (761)
Q Consensus 545 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~l~~~~----------l~~~~~L~~L~l~~~~l~~~~~~------- 606 (761)
..+..+..+++|+.|+++++. +..++. +... .+..+. ...+++|+.|.++.+.+......
T Consensus 273 ~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~ 350 (570)
T 2z63_A 273 DIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350 (570)
T ss_dssp CSTTTTGGGTTCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCC
T ss_pred hchhhhcCcCcccEEEecCcc-chhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCC
Confidence 111222334444444444321 222111 1100 111110 11233344444433322110000
Q ss_pred cCcccch--h-HHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCC--CCCCCC-cceEEec-
Q 042791 607 EGRRKNE--K-DKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLP--PLGKLP-LEKLVID- 679 (761)
Q Consensus 607 ~~~~~~~--~-~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~--~~~~lp-l~~l~l~- 679 (761)
....... . .......+..+++|+.|++++|....+|..+..+++|+.|++++|......+ .+..++ ++.+++.
T Consensus 351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430 (570)
T ss_dssp EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTT
T ss_pred EEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcC
Confidence 0000000 0 0000112224556666666666555554445566666666666664332222 233344 4444433
Q ss_pred ---------------cCcCceEeCcccc--CCCcccccCCccceeeccccccccc----CCCCCccceEeeecCCCCcCC
Q 042791 680 ---------------DLKSVKSVGNEFL--GIEENIIAFPKLKYLKIWATEELEE----TTDIPRLSSLTIWYCPKLKVL 738 (761)
Q Consensus 680 ---------------~l~~L~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~l~~l 738 (761)
+++.|++.+|.+. .+|..+..+++|++|++++|..... +..+++|++|++++|...+..
T Consensus 431 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 510 (570)
T 2z63_A 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510 (570)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCC
Confidence 3556667777776 2677778888888888888876554 456788899999888655555
Q ss_pred CcccCCCCCccEEEEecCCC
Q 042791 739 PDYLLQTTALQELRIWGCPI 758 (761)
Q Consensus 739 ~~~l~~l~~L~~L~l~~c~~ 758 (761)
+..+.++++|+.|++++|+.
T Consensus 511 ~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 511 DGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp TTTTTTCTTCCEEECCSSCB
T ss_pred HHHhhcccCCcEEEecCCcc
Confidence 55677888999999988864
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=8.3e-25 Score=254.52 Aligned_cols=157 Identities=20% Similarity=0.158 Sum_probs=122.2
Q ss_pred CCCceEEEEEeecCCCCC-cccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccc
Q 042791 372 SGVKVRHLGLNFQRGASF-PMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIK 450 (761)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 450 (761)
....++.|+++.+.+..+ |..+.++++|++|++++|.. ...+.+..|.++++|++|+|++|.+.+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-----~~~i~~~~f~~L~~L~~L~Ls~N~l~~--------- 87 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-----PLTIDKEAFRNLPNLRILDLGSSKIYF--------- 87 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-----CCEECTTTTSSCTTCCEEECTTCCCCE---------
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-----ccccCHHHhcCCCCCCEEECCCCcCcc---------
Confidence 357899999999998876 56889999999999998843 234445558899999999999877654
Q ss_pred ccccchhcccccCccccCCcCCcc-Cchh--hhccCCCcEEecCCccCccccc-ccccccccccEeecCCcccccccccc
Q 042791 451 EIPENVGKLIHLKYLNLSELGIER-LPET--LCELYNLQKLDIRRCRNLRELP-AGIGKLMNMRTLLNGETYALKYMPIG 526 (761)
Q Consensus 451 ~lp~~~~~l~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~ 526 (761)
..|..|+.+++|++|++++|.++. +|.. +.++++|++|++++|......| ..++++++|++|++++|.+....|..
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 357788889999999999998874 5554 8889999999999988655433 56888999999999888776666666
Q ss_pred CCCC--CCCcccCceeec
Q 042791 527 ISKL--TNLRTLDRFVVG 542 (761)
Q Consensus 527 l~~l--~~L~~L~l~~~~ 542 (761)
+..+ ++|+.|++..|.
T Consensus 168 l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp GHHHHHCSSCCCEECCSB
T ss_pred cccccCCccceEECCCCc
Confidence 6555 667777766665
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=7.7e-25 Score=228.24 Aligned_cols=299 Identities=18% Similarity=0.155 Sum_probs=193.2
Q ss_pred CCceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEI 452 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 452 (761)
...++.+.+..+.+..++ .+..+++|++|++++|.+.. +++ +.++++|++|++++|.+. .+
T Consensus 43 l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~------~~~--~~~l~~L~~L~L~~n~i~----------~~ 103 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITD------ISP--LSNLVKLTNLYIGTNKIT----------DI 103 (347)
T ss_dssp HTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG--GTTCTTCCEEECCSSCCC----------CC
T ss_pred cccccEEEEeCCccccch-hhhhcCCccEEEccCCcccc------chh--hhcCCcCCEEEccCCccc----------Cc
Confidence 346677777777777666 47777777777777776532 122 567777777777765443 34
Q ss_pred ccchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCC
Q 042791 453 PENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTN 532 (761)
Q Consensus 453 p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 532 (761)
| .+..+++|++|++++|.++.+|. +..+++|++|++++|.....++. +..+++|++|++++|..... +. +..+++
T Consensus 104 ~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~-~~-~~~l~~ 178 (347)
T 4fmz_A 104 S-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDV-TP-IANLTD 178 (347)
T ss_dssp G-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTT
T ss_pred h-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCc-hh-hccCCC
Confidence 3 36677777777777777777665 77777777777777765555544 77777777777777754332 22 556666
Q ss_pred CcccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccc
Q 042791 533 LRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKN 612 (761)
Q Consensus 533 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 612 (761)
|+.|++++|.....+. +..+++ |+.++++.+.+...
T Consensus 179 L~~L~l~~n~l~~~~~-~~~l~~----------------------------------L~~L~l~~n~l~~~--------- 214 (347)
T 4fmz_A 179 LYSLSLNYNQIEDISP-LASLTS----------------------------------LHYFTAYVNQITDI--------- 214 (347)
T ss_dssp CSEEECTTSCCCCCGG-GGGCTT----------------------------------CCEEECCSSCCCCC---------
T ss_pred CCEEEccCCccccccc-ccCCCc----------------------------------cceeecccCCCCCC---------
Confidence 6666665554333222 333444 44444444332110
Q ss_pred hhHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCcccc
Q 042791 613 EKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFL 692 (761)
Q Consensus 613 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~ 692 (761)
..+..+++|+.|++++|....++. +..+++|++|++++|. ++.++.+..++ +++.|++.+|.++
T Consensus 215 -------~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~-------~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 215 -------TPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ-ISDINAVKDLT-------KLKMLNVGSNQIS 278 (347)
T ss_dssp -------GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCT-------TCCEEECCSSCCC
T ss_pred -------chhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc-cCCChhHhcCC-------CcCEEEccCCccC
Confidence 002335567777777776666554 6677888888888874 33333333333 4555555666666
Q ss_pred CCCcccccCCccceeeccccccccc----CCCCCccceEeeecCCCCcCCCcccCCCCCccEEEEecCCC
Q 042791 693 GIEENIIAFPKLKYLKIWATEELEE----TTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWGCPI 758 (761)
Q Consensus 693 ~~~~~~~~~~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~ 758 (761)
.++ .+..+++|++|++++|..... +..+++|++|++++|+..+ ++. +..+++|++|++++|+.
T Consensus 279 ~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 279 DIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC-CGG-GGGCTTCSEESSSCC--
T ss_pred CCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc-ccC-hhhhhccceeehhhhcc
Confidence 664 367899999999999987654 5679999999999997544 443 78899999999999974
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=4.8e-25 Score=240.35 Aligned_cols=309 Identities=19% Similarity=0.148 Sum_probs=192.7
Q ss_pred EEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchh
Q 042791 378 HLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVG 457 (761)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~ 457 (761)
.+..+...+..+|..+. ++++.|++++|.+. .+++..|.++++|++|+|++|.+.+ ..|..|.
T Consensus 15 ~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~i~~---------~~~~~~~ 77 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP--TETRLLDLGKNRIK------TLNQDEFASFPHLEELELNENIVSA---------VEPGAFN 77 (477)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSSCCC------EECTTTTTTCTTCCEEECTTSCCCE---------ECTTTTT
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEECCCCccc------eECHhHccCCCCCCEEECCCCccCE---------eChhhhh
Confidence 45555666777787653 57899999888763 2333447889999999999776654 3467788
Q ss_pred cccccCccccCCcCCccCchh-hhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCccc
Q 042791 458 KLIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTL 536 (761)
Q Consensus 458 ~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 536 (761)
.+++|++|++++|.++.+|.. |.++++|++|+|++|......|..+..+++|++|++++|.+....|..+..+++|+.|
T Consensus 78 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 899999999999999888864 6889999999999988666677778899999999999987776667778888999999
Q ss_pred CceeecCccCCC-CccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchhH
Q 042791 537 DRFVVGGGVDGS-NTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKD 615 (761)
Q Consensus 537 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 615 (761)
++.+|.....+. .+..+++|+.|+++++. +..+ ....+..+.+|+.|+++.+.....
T Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~---------~~~~~~~l~~L~~L~l~~~~~~~~------------ 215 (477)
T 2id5_A 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAI---------RDYSFKRLYRLKVLEISHWPYLDT------------ 215 (477)
T ss_dssp EEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEE---------CTTCSCSCTTCCEEEEECCTTCCE------------
T ss_pred ECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEe---------ChhhcccCcccceeeCCCCccccc------------
Confidence 888877555442 24566777777766431 1111 112345566677777765542110
Q ss_pred HHHHhhCCCCCCCceEEEEeeCCCCCCc-hhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccC-
Q 042791 616 KQLLEALQPPLNVEELWIIFYGGNIFPK-WLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLG- 693 (761)
Q Consensus 616 ~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~- 693 (761)
+........+|+.|++++|....+|. .+..+++|+.|++++|.. +.++. -....+.+++.|++.+|.+..
T Consensus 216 --~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~-----~~~~~l~~L~~L~L~~n~l~~~ 287 (477)
T 2id5_A 216 --MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-STIEG-----SMLHELLRLQEIQLVGGQLAVV 287 (477)
T ss_dssp --ECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC-CEECT-----TSCTTCTTCCEEECCSSCCSEE
T ss_pred --cCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC-CccCh-----hhccccccCCEEECCCCccceE
Confidence 01111122366777777766666653 456667777777766642 11110 000112233344444444444
Q ss_pred CCcccccCCccceeeccccccccc----CCCCCccceEeeecCC
Q 042791 694 IEENIIAFPKLKYLKIWATEELEE----TTDIPRLSSLTIWYCP 733 (761)
Q Consensus 694 ~~~~~~~~~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~ 733 (761)
.|..+.++++|++|++++|..... +..+++|++|++++|+
T Consensus 288 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 233444555555555555543322 2334455555555554
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.6e-24 Score=234.87 Aligned_cols=317 Identities=19% Similarity=0.219 Sum_probs=176.0
Q ss_pred CceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccc
Q 042791 374 VKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIP 453 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp 453 (761)
.+++.++++.+.+..+++ +..+++|++|++++|.+.. +++ +.++++|++|++++|.+. .+|
T Consensus 68 ~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~------~~~--~~~l~~L~~L~L~~n~l~----------~~~ 128 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD------ITP--LANLTNLTGLTLFNNQIT----------DID 128 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC------CGG--GTTCTTCCEEECCSSCCC----------CCG
T ss_pred cCCCEEECCCCccCCchh-hhccccCCEEECCCCcccc------Chh--hcCCCCCCEEECCCCCCC----------CCh
Confidence 344444444444444443 4444445555444443311 111 344444555555433322 222
Q ss_pred cchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCC
Q 042791 454 ENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNL 533 (761)
Q Consensus 454 ~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 533 (761)
. +..+++|++|++++|.++.+| .+..+++|++|++++ . ...++. +..+++|++|++++|... .++ .+..+++|
T Consensus 129 ~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L 201 (466)
T 1o6v_A 129 P-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLKP-LANLTTLERLDISSNKVS-DIS-VLAKLTNL 201 (466)
T ss_dssp G-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCGG-GTTCTTCCEEECCSSCCC-CCG-GGGGCTTC
T ss_pred H-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-c-ccCchh-hccCCCCCEEECcCCcCC-CCh-hhccCCCC
Confidence 2 444455555555555444443 244455555555432 1 222222 555555566666555432 222 24555556
Q ss_pred cccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccch
Q 042791 534 RTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNE 613 (761)
Q Consensus 534 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 613 (761)
+.|++.++.....+. +..+++|+.|+++++. +..+ ..+..+++|+.|+++.|.+...
T Consensus 202 ~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~-----------~~l~~l~~L~~L~l~~n~l~~~---------- 258 (466)
T 1o6v_A 202 ESLIATNNQISDITP-LGILTNLDELSLNGNQ-LKDI-----------GTLASLTNLTDLDLANNQISNL---------- 258 (466)
T ss_dssp SEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCC-----------GGGGGCTTCSEEECCSSCCCCC----------
T ss_pred CEEEecCCccccccc-ccccCCCCEEECCCCC-cccc-----------hhhhcCCCCCEEECCCCccccc----------
Confidence 666555554333322 3445555555555431 1111 1244566777777766653211
Q ss_pred hHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccC
Q 042791 614 KDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLG 693 (761)
Q Consensus 614 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~ 693 (761)
..+..+++|+.|++++|....++. +..+++|+.|++++|.. +.++.++. +.+++.|++.+|.+.+
T Consensus 259 ------~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l-~~~~~~~~-------l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 259 ------APLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL-EDISPISN-------LKNLTYLTLYFNNISD 323 (466)
T ss_dssp ------GGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC-SCCGGGGG-------CTTCSEEECCSSCCSC
T ss_pred ------hhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcc-cCchhhcC-------CCCCCEEECcCCcCCC
Confidence 014456777777777777666554 66777788888877752 22222222 3456667777788877
Q ss_pred CCcccccCCccceeeccccccccc--CCCCCccceEeeecCCCCcCCCcccCCCCCccEEEEecCC
Q 042791 694 IEENIIAFPKLKYLKIWATEELEE--TTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWGCP 757 (761)
Q Consensus 694 ~~~~~~~~~~L~~L~l~~~~~~~~--~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 757 (761)
.+. +..+++|++|++++|..... +..+++|+.|++++|+..+..| +..+++|+.|++++|+
T Consensus 324 ~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 324 ISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred chh-hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 554 67899999999999866543 6678899999999997665554 7889999999999885
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=6.4e-25 Score=244.26 Aligned_cols=75 Identities=23% Similarity=0.310 Sum_probs=46.9
Q ss_pred cCcCceEeCccccC-CCcccccC-Cccceeeccccccccc---CCCCCccceEeeecCCCCcCCCcc-cCCCCCccEEEE
Q 042791 680 DLKSVKSVGNEFLG-IEENIIAF-PKLKYLKIWATEELEE---TTDIPRLSSLTIWYCPKLKVLPDY-LLQTTALQELRI 753 (761)
Q Consensus 680 ~l~~L~~~~~~~~~-~~~~~~~~-~~L~~L~l~~~~~~~~---~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l 753 (761)
+++.|++++|.+++ .|. .+ ++|++|++++|..... ...+++|++|++++|. +..+|.. +..+++|+.|++
T Consensus 429 ~L~~L~l~~n~l~~~~~~---~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFR---CLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp TCCEEECCSSCCCGGGGS---SCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEEC
T ss_pred cCCEEECCCCCCCcchhh---hhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEe
Confidence 44555555566544 332 22 5777777777755432 3356777778877775 3356665 667777888888
Q ss_pred ecCCC
Q 042791 754 WGCPI 758 (761)
Q Consensus 754 ~~c~~ 758 (761)
++||.
T Consensus 505 ~~N~~ 509 (562)
T 3a79_B 505 HDNPW 509 (562)
T ss_dssp CSCCB
T ss_pred cCCCc
Confidence 77763
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=3.6e-24 Score=238.24 Aligned_cols=351 Identities=19% Similarity=0.144 Sum_probs=241.0
Q ss_pred EEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhc
Q 042791 379 LGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGK 458 (761)
Q Consensus 379 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~ 458 (761)
.+...+.+..+|..+. ++|++|++++|.+. .+++..|.++++|++|++++|.+.+ ..|..++.
T Consensus 10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~n~i~~---------~~~~~~~~ 72 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNKIT------YIGHGDLRACANLQVLILKSSRINT---------IEGDAFYS 72 (549)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCCC------EECSSTTSSCTTCCEEECTTSCCCE---------ECTTTTTT
T ss_pred EECCCCccccccccCC--CCccEEECcCCccC------ccChhhhhcCCcccEEECCCCCcCc---------cChhhccc
Confidence 3445567778887664 79999999999863 2223347899999999999877654 34567899
Q ss_pred ccccCccccCCcCCccCchh-hhccCCCcEEecCCccCcc-cccccccccccccEeecCCcccccccc-ccCCCCCCCcc
Q 042791 459 LIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCRNLR-ELPAGIGKLMNMRTLLNGETYALKYMP-IGISKLTNLRT 535 (761)
Q Consensus 459 l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~ 535 (761)
+++|++|++++|.++.+|.. ++++++|++|++++|.... ..|..+..+++|++|++++|.....+| ..+..+++|+.
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 99999999999999987765 9999999999999998554 467789999999999999998677776 47999999999
Q ss_pred cCceeecCcc-CCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCc-----
Q 042791 536 LDRFVVGGGV-DGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGR----- 609 (761)
Q Consensus 536 L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~----- 609 (761)
|++++|.... .+..+..+++|+.|+++++. . ...+. .....+++|+.|+++.|.+.........
T Consensus 153 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~------~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 222 (549)
T 2z81_A 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-S------AFLLE---IFADILSSVRYLELRDTNLARFQFSPLPVDEVS 222 (549)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSB-S------TTHHH---HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCC
T ss_pred eeccCCcccccChhhhhccccCceEecccCc-c------cccch---hhHhhcccccEEEccCCccccccccccchhhhh
Confidence 9999988554 56667788899998877532 1 11111 1123456666666666654432100000
Q ss_pred ------------ccchhHHHHHhhC-------------------------------------------------------
Q 042791 610 ------------RKNEKDKQLLEAL------------------------------------------------------- 622 (761)
Q Consensus 610 ------------~~~~~~~~~~~~l------------------------------------------------------- 622 (761)
........+...+
T Consensus 223 ~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l 302 (549)
T 2z81_A 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302 (549)
T ss_dssp CCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCC
T ss_pred hcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccc
Confidence 0000000000000
Q ss_pred ----CCCCCCceEEEEeeCCCCCCchh-hhhcCCcEEEeecCCCCCCCC----CCCCCC-cceEEec-------------
Q 042791 623 ----QPPLNVEELWIIFYGGNIFPKWL-TLLTNLRNLTLASCVNCEHLP----PLGKLP-LEKLVID------------- 679 (761)
Q Consensus 623 ----~~~~~L~~L~l~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~~~----~~~~lp-l~~l~l~------------- 679 (761)
....+|+.|+++++....+|..+ ..+++|+.|++++|...+.+| .++.+| ++.+++.
T Consensus 303 ~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 382 (549)
T 2z81_A 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382 (549)
T ss_dssp CHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHH
T ss_pred hhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhh
Confidence 01245777777777777778766 478999999999887543221 234455 5555443
Q ss_pred -----cCcCceEeCccccCCCcccccCCccceeeccccccccc---------------------CCCCCccceEeeecCC
Q 042791 680 -----DLKSVKSVGNEFLGIEENIIAFPKLKYLKIWATEELEE---------------------TTDIPRLSSLTIWYCP 733 (761)
Q Consensus 680 -----~l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---------------------~~~l~~L~~L~l~~~~ 733 (761)
+++.|++++|.++.+|..+..+++|++|++++|..... ...+++|++|++++|+
T Consensus 383 ~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~ 462 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK 462 (549)
T ss_dssp GGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred hhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc
Confidence 46667788888888887777777788877777764322 2357777777777775
Q ss_pred CCcCCCcccCCCCCccEEEEecCCC
Q 042791 734 KLKVLPDYLLQTTALQELRIWGCPI 758 (761)
Q Consensus 734 ~l~~l~~~l~~l~~L~~L~l~~c~~ 758 (761)
+..+|. ...+++|+.|++++|..
T Consensus 463 -l~~ip~-~~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 463 -LKTLPD-ASLFPVLLVMKISRNQL 485 (549)
T ss_dssp -CSSCCC-GGGCTTCCEEECCSSCC
T ss_pred -cCcCCC-cccCccCCEEecCCCcc
Confidence 346765 45678888888888753
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.2e-24 Score=230.39 Aligned_cols=303 Identities=14% Similarity=0.071 Sum_probs=199.2
Q ss_pred CCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCcc
Q 042791 395 EFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIER 474 (761)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~ 474 (761)
.+++++.|++.++.+ ..++..++..+++|++|++++|.+.. ..|..+..+++|++|++++|.++.
T Consensus 43 ~l~~l~~l~l~~~~l------~~l~~~~~~~l~~L~~L~L~~n~i~~---------~~~~~~~~l~~L~~L~L~~n~l~~ 107 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM------RKLPAALLDSFRQVELLNLNDLQIEE---------IDTYAFAYAHTIQKLYMGFNAIRY 107 (390)
T ss_dssp GGCCCSEEEEESCEE------SEECTHHHHHCCCCSEEECTTSCCCE---------ECTTTTTTCTTCCEEECCSSCCCC
T ss_pred ccCCceEEEecCCch------hhCChhHhcccccCcEEECCCCcccc---------cChhhccCCCCcCEEECCCCCCCc
Confidence 456777777777664 34455566777788888887655432 123356777778888888877776
Q ss_pred Cc-hhhhccCCCcEEecCCccCccccccc-ccccccccEeecCCccccccccccCCCCCCCcccCceeecCccCCCCccC
Q 042791 475 LP-ETLCELYNLQKLDIRRCRNLRELPAG-IGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSNTCR 552 (761)
Q Consensus 475 lp-~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 552 (761)
+| ..+.++++|++|++++|. +..+|.. +..+++|++|++++|.+....|..+..+++|+.|++++|.....+ ...
T Consensus 108 ~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~ 184 (390)
T 3o6n_A 108 LPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSL 184 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGG
T ss_pred CCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--ccc
Confidence 54 446777788888888776 4456654 467778888888777665555556777777888777777655432 455
Q ss_pred cccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEE
Q 042791 553 LESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELW 632 (761)
Q Consensus 553 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 632 (761)
+++|+.|+++++ .+. .+....+++.|+++.|.+... ....+++|+.|+
T Consensus 185 l~~L~~L~l~~n-~l~--------------~~~~~~~L~~L~l~~n~l~~~-----------------~~~~~~~L~~L~ 232 (390)
T 3o6n_A 185 IPSLFHANVSYN-LLS--------------TLAIPIAVEELDASHNSINVV-----------------RGPVNVELTILK 232 (390)
T ss_dssp CTTCSEEECCSS-CCS--------------EEECCSSCSEEECCSSCCCEE-----------------ECCCCSSCCEEE
T ss_pred ccccceeecccc-ccc--------------ccCCCCcceEEECCCCeeeec-----------------cccccccccEEE
Confidence 667777776643 111 122334667777666653211 011245788888
Q ss_pred EEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccCCCcccccCCccceeecccc
Q 042791 633 IIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLGIEENIIAFPKLKYLKIWAT 712 (761)
Q Consensus 633 l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 712 (761)
++++..... .++..+++|+.|++++|......| -....+.+++.|++.+|.++.+|.....+++|++|++++|
T Consensus 233 l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 233 LQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMY------HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp CCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEES------GGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS
T ss_pred CCCCCCccc-HHHcCCCCccEEECCCCcCCCcCh------hHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC
Confidence 888877664 577788888888888885322111 1111234566667777777777766677888888888888
Q ss_pred ccccc---CCCCCccceEeeecCCCCcCCCcccCCCCCccEEEEecCC
Q 042791 713 EELEE---TTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWGCP 757 (761)
Q Consensus 713 ~~~~~---~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 757 (761)
..... +..+++|++|++++|.. ..++ +..+++|+.|++++|+
T Consensus 306 ~l~~~~~~~~~l~~L~~L~L~~N~i-~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 306 HLLHVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCCCGGGHHHHTTCSEEECCSSCC-CCCC--CCTTCCCSEEECCSSC
T ss_pred cceecCccccccCcCCEEECCCCcc-ceeC--chhhccCCEEEcCCCC
Confidence 66543 34578888888888864 4444 5678888888888886
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=2e-24 Score=246.63 Aligned_cols=156 Identities=19% Similarity=0.194 Sum_probs=120.5
Q ss_pred CCceEEEEEeecCCCCCcc-cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPM-SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKE 451 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 451 (761)
..++++++++.+.+..+++ .+.++++|++|++++|.+.. +.+..+.++++|++|++++|.+. .
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~----------~ 87 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK------LEPELCQKLPMLKVLNLQHNELS----------Q 87 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC------CCTTHHHHCTTCCEEECCSSCCC----------C
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc------cCHHHHhcccCcCEEECCCCccC----------c
Confidence 4689999999999888875 58999999999999887632 23445788999999999976554 4
Q ss_pred ccc-chhcccccCccccCCcCCccCc-hhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCC-
Q 042791 452 IPE-NVGKLIHLKYLNLSELGIERLP-ETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGIS- 528 (761)
Q Consensus 452 lp~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~- 528 (761)
+|. .|+.+++|++|++++|.++.+| ..++++++|++|++++|......|..+..+++|++|++++|.+....+..+.
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG
T ss_pred cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhc
Confidence 655 5888899999999999888776 5788899999999999886666677778888999999988865544444332
Q ss_pred -CCCCCcccCceeecCc
Q 042791 529 -KLTNLRTLDRFVVGGG 544 (761)
Q Consensus 529 -~l~~L~~L~l~~~~~~ 544 (761)
.+++|+.|++++|...
T Consensus 168 ~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIK 184 (680)
T ss_dssp GTTCEESEEECTTCCCC
T ss_pred cccccccEEECCCCccc
Confidence 4567777777766543
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.3e-24 Score=242.93 Aligned_cols=303 Identities=14% Similarity=0.078 Sum_probs=215.4
Q ss_pred CCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCcc
Q 042791 395 EFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIER 474 (761)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~ 474 (761)
.+++++.|++.++.+ ..+++.++..+++|++|+|++|.+.+ ..|..++.+++|++|++++|.++.
T Consensus 49 ~l~~l~~l~l~~~~l------~~lp~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~ 113 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM------RKLPAALLDSFRQVELLNLNDLQIEE---------IDTYAFAYAHTIQKLYMGFNAIRY 113 (597)
T ss_dssp GGCCCSEEEESSCEE------SEECTHHHHHCCCCSEEECTTSCCCE---------ECTTTTTTCTTCCEEECCSSCCCC
T ss_pred cCCCceEEEeeCCCC------CCcCHHHHccCCCCcEEECCCCCCCC---------CChHHhcCCCCCCEEECCCCcCCC
Confidence 467788888887764 45566667888888888888666543 234467888888888888888886
Q ss_pred Cch-hhhccCCCcEEecCCccCccccccc-ccccccccEeecCCccccccccccCCCCCCCcccCceeecCccCCCCccC
Q 042791 475 LPE-TLCELYNLQKLDIRRCRNLRELPAG-IGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSNTCR 552 (761)
Q Consensus 475 lp~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 552 (761)
+|. .|+++++|++|+|++|. +..+|.. +..+++|++|++++|.+....|..++.+++|+.|++++|.....+ ...
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~ 190 (597)
T 3oja_B 114 LPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSL 190 (597)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGG
T ss_pred CCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhh
Confidence 664 46888888888888887 4456654 478888888888888776666667888888888888877755543 556
Q ss_pred cccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEE
Q 042791 553 LESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELW 632 (761)
Q Consensus 553 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 632 (761)
+++|+.|+++++ .+. .+....+|+.|+++.|.+.... ...+++|+.|+
T Consensus 191 l~~L~~L~l~~n-~l~--------------~l~~~~~L~~L~ls~n~l~~~~-----------------~~~~~~L~~L~ 238 (597)
T 3oja_B 191 IPSLFHANVSYN-LLS--------------TLAIPIAVEELDASHNSINVVR-----------------GPVNVELTILK 238 (597)
T ss_dssp CTTCSEEECCSS-CCS--------------EEECCTTCSEEECCSSCCCEEE-----------------CSCCSCCCEEE
T ss_pred hhhhhhhhcccC-ccc--------------cccCCchhheeeccCCcccccc-----------------cccCCCCCEEE
Confidence 777777777753 111 1233456777777766642110 01235788888
Q ss_pred EEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccCCCcccccCCccceeecccc
Q 042791 633 IIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLGIEENIIAFPKLKYLKIWAT 712 (761)
Q Consensus 633 l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 712 (761)
+++|.... +.++..+++|+.|++++|......| .....+.+|+.|++++|.++++|.....+++|+.|+|++|
T Consensus 239 L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 239 LQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMY------HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp CCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEES------GGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS
T ss_pred CCCCCCCC-ChhhccCCCCCEEECCCCccCCCCH------HHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC
Confidence 88888776 5678888999999998886332211 1122344666677777888877777777899999999988
Q ss_pred ccccc---CCCCCccceEeeecCCCCcCCCcccCCCCCccEEEEecCC
Q 042791 713 EELEE---TTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWGCP 757 (761)
Q Consensus 713 ~~~~~---~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 757 (761)
..... +..+++|++|++++|... .++ +..+++|+.|+|++|+
T Consensus 312 ~l~~i~~~~~~l~~L~~L~L~~N~l~-~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 312 HLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSC
T ss_pred CCCccCcccccCCCCCEEECCCCCCC-CcC--hhhcCCCCEEEeeCCC
Confidence 76543 346788999999998643 444 5678899999999887
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=1.4e-24 Score=247.97 Aligned_cols=349 Identities=18% Similarity=0.087 Sum_probs=219.1
Q ss_pred EEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccch
Q 042791 377 RHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENV 456 (761)
Q Consensus 377 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~ 456 (761)
..++.+...+..+|..+. ++++.|++++|.+.. +++..|.++++|++|++++|.+.+ ..|..+
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~ 69 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRR------LPAANFTRYSQLTSLDVGFNTISK---------LEPELC 69 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCC------CCGGGGGGGTTCSEEECCSSCCCC---------CCTTHH
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCC------cCHHHHhCCCcCcEEECCCCccCc---------cCHHHH
Confidence 356667777888887664 799999999998632 334457899999999999877664 456778
Q ss_pred hcccccCccccCCcCCccCch-hhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcc
Q 042791 457 GKLIHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRT 535 (761)
Q Consensus 457 ~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 535 (761)
+.+++|++|++++|.++.+|. .|+++++|++|++++|......|..+..+++|++|++++|......|..++.+++|+.
T Consensus 70 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 149 (680)
T 1ziw_A 70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149 (680)
T ss_dssp HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCE
T ss_pred hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCE
Confidence 999999999999999999987 5999999999999999855545567899999999999999887777888999999999
Q ss_pred cCceeecCccCCCC---ccCcccccCccCCceEEEcCCCC--CCChhHHhhcccc----------------ccCCCCcEE
Q 042791 536 LDRFVVGGGVDGSN---TCRLESLKNLQLRGKCSIEGLSN--VSHVDEAERLQLY----------------NKKNLLRLH 594 (761)
Q Consensus 536 L~l~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~l~~~~l~----------------~~~~L~~L~ 594 (761)
|++++|.....+.. ...+++|+.|+++++ .+..... +..+..+..+.+. ...+|+.|+
T Consensus 150 L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~ 228 (680)
T 1ziw_A 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228 (680)
T ss_dssp EECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEE
T ss_pred EEccCCcccccCHHHhhccccccccEEECCCC-cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEE
Confidence 99998876554432 124578999998865 2332211 1111111111111 124556665
Q ss_pred EEeecccCCCCCcCcccchhHHHHHhhCCCC--CCCceEEEEeeCCCCC-CchhhhhcCCcEEEeecCCCCCCCC-CCCC
Q 042791 595 LVFGRVVDGEGEEGRRKNEKDKQLLEALQPP--LNVEELWIIFYGGNIF-PKWLTLLTNLRNLTLASCVNCEHLP-PLGK 670 (761)
Q Consensus 595 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~ 670 (761)
++.+.+.+.... .+..+ ++|+.|++++|....+ |.++..+++|+.|++++|......| .++.
T Consensus 229 L~~n~l~~~~~~--------------~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (680)
T 1ziw_A 229 LSNSQLSTTSNT--------------TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294 (680)
T ss_dssp CTTSCCCEECTT--------------TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT
T ss_pred ccCCcccccChh--------------HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC
Confidence 555443221100 01111 2245555544443332 2334444555555554443222111 1222
Q ss_pred CC-cceEE-------------------------eccCcCceEeCccccCC-CcccccCCccceeecccccc---------
Q 042791 671 LP-LEKLV-------------------------IDDLKSVKSVGNEFLGI-EENIIAFPKLKYLKIWATEE--------- 714 (761)
Q Consensus 671 lp-l~~l~-------------------------l~~l~~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~--------- 714 (761)
++ ++.+. +.+++.|++.+|.+.++ +..+.++++|++|++++|..
T Consensus 295 l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~ 374 (680)
T 1ziw_A 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374 (680)
T ss_dssp CTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTT
T ss_pred CCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhh
Confidence 22 22222 34566677777877773 44567778888888776642
Q ss_pred -------------------ccc----CCCCCccceEeeecCCCCcCCC-cccCCCCCccEEEEecCC
Q 042791 715 -------------------LEE----TTDIPRLSSLTIWYCPKLKVLP-DYLLQTTALQELRIWGCP 757 (761)
Q Consensus 715 -------------------~~~----~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~c~ 757 (761)
... +..+++|+.|++++|...+.+| ..+..+++|++|++++|.
T Consensus 375 f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 375 FVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred hcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 111 2345566666666665544444 345566666666666664
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=4.3e-24 Score=231.60 Aligned_cols=343 Identities=14% Similarity=0.086 Sum_probs=247.2
Q ss_pred EEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccc-ccch
Q 042791 378 HLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEI-PENV 456 (761)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l-p~~~ 456 (761)
.+......+..+|. + .++|++|++++|.+. .+++..+.++++|++|++++|.+.+ .+ |..+
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~L~~n~~~~---------~i~~~~~ 75 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSLNSIA------ELNETSFSRLQDLQFLKVEQQTPGL---------VIRNNTF 75 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCSSCCC------EECTTTTSSCTTCCEEECCCCSTTC---------EECTTTT
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecCCccC------cCChhHhccCccccEEECcCCcccc---------eECcccc
Confidence 35555667777886 3 378999999998863 2333447899999999999876643 33 4568
Q ss_pred hcccccCccccCCcCCccC-chhhhccCCCcEEecCCccCccccccc--ccccccccEeecCCcccccccccc-CCCCCC
Q 042791 457 GKLIHLKYLNLSELGIERL-PETLCELYNLQKLDIRRCRNLRELPAG--IGKLMNMRTLLNGETYALKYMPIG-ISKLTN 532 (761)
Q Consensus 457 ~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~ 532 (761)
..+++|++|++++|.++.+ |..+.++++|++|++++|...+..|.. +..+++|++|++++|.+....|.. +..+++
T Consensus 76 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp TTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred cccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 8999999999999999865 788999999999999999966655555 889999999999999877776766 889999
Q ss_pred CcccCceeecCccC-CCCccCc--ccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCc
Q 042791 533 LRTLDRFVVGGGVD-GSNTCRL--ESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGR 609 (761)
Q Consensus 533 L~~L~l~~~~~~~~-~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~ 609 (761)
|+.|++++|..... +..+..+ .+|+.|+++++ .+..+... .........+..+++|+.|+++.|.+..
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n-~l~~~~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~------- 226 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI-TLQDMNEY-WLGWEKCGNPFKNTSITTLDLSGNGFKE------- 226 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC-BCTTCSTT-CTTHHHHCCTTTTCEEEEEECTTSCCCH-------
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccC-cccccchh-hccccccccccccceeeeEecCCCcccc-------
Confidence 99999998885544 3334444 57788888754 33333221 1111222234456788999988876321
Q ss_pred ccchhHHHHHhhCCCCCCCceEEEEeeCCCC-------C----Cchhh--hhcCCcEEEeecCCCCCCCCC-CCCCCcce
Q 042791 610 RKNEKDKQLLEALQPPLNVEELWIIFYGGNI-------F----PKWLT--LLTNLRNLTLASCVNCEHLPP-LGKLPLEK 675 (761)
Q Consensus 610 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------~----p~~~~--~l~~L~~L~l~~~~~~~~~~~-~~~lpl~~ 675 (761)
.............+|+.|.++++.... + +..+. ..++|+.|++++|......|. ++.
T Consensus 227 ----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----- 297 (455)
T 3v47_A 227 ----SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH----- 297 (455)
T ss_dssp ----HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-----
T ss_pred ----cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc-----
Confidence 111112222234788899888764321 1 11122 347899999999974433331 233
Q ss_pred EEeccCcCceEeCccccC-CCcccccCCccceeeccccccccc----CCCCCccceEeeecCCCCcCCCcccCCCCCccE
Q 042791 676 LVIDDLKSVKSVGNEFLG-IEENIIAFPKLKYLKIWATEELEE----TTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQE 750 (761)
Q Consensus 676 l~l~~l~~L~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~ 750 (761)
+.+++.|++.+|.+.. .|..+.++++|++|++++|..... +..+++|++|++++|...+..|..+..+++|++
T Consensus 298 --l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 298 --FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp --CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred --CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence 3466677777888887 466788999999999999977544 567999999999999877667888999999999
Q ss_pred EEEecCCC
Q 042791 751 LRIWGCPI 758 (761)
Q Consensus 751 L~l~~c~~ 758 (761)
|++++|..
T Consensus 376 L~L~~N~l 383 (455)
T 3v47_A 376 LALDTNQL 383 (455)
T ss_dssp EECCSSCC
T ss_pred EECCCCcc
Confidence 99999864
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=6.3e-23 Score=238.72 Aligned_cols=108 Identities=17% Similarity=0.068 Sum_probs=64.5
Q ss_pred CCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcccCceeecCccC-CCCccCcccccCccC
Q 042791 483 YNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVD-GSNTCRLESLKNLQL 561 (761)
Q Consensus 483 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l 561 (761)
.+|+.|++++|......|..+..+++|+.|++++|.+....|..+..+++|+.|++++|..... +..+..+++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 4566666666664444555566677777777777766555566677777777777777664433 345566777777777
Q ss_pred CceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecc
Q 042791 562 RGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRV 600 (761)
Q Consensus 562 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l 600 (761)
+++ .+..+.. ..+..+++|+.|+++.|.+
T Consensus 346 ~~N-~i~~~~~---------~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 346 QKN-HIAIIQD---------QTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp CSC-CCCCCCS---------SCSCSCCCCCEEEEETCCS
T ss_pred CCC-CCCccCh---------hhhcCCCCCCEEECCCCCC
Confidence 654 2222211 1234455666666665554
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=2.8e-24 Score=227.63 Aligned_cols=305 Identities=15% Similarity=0.051 Sum_probs=237.0
Q ss_pred CCceEEEEEeecCCCCCccc-ccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPMS-FFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKE 451 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 451 (761)
..+++.+.+..+.+..+|.. +..+++|++|++++|.+. .+++..+..+++|++|++++|.+.+ .
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~---------~ 108 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRY---------L 108 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCC---------C
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc------ccChhhccCCCCcCEEECCCCCCCc---------C
Confidence 46788999999999989875 688999999999998763 2333447899999999999776654 3
Q ss_pred cccchhcccccCccccCCcCCccCchh-hhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCC
Q 042791 452 IPENVGKLIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKL 530 (761)
Q Consensus 452 lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l 530 (761)
.|..++.+++|++|++++|.++.+|.. +.++++|++|++++|......|..+..+++|++|++++|.... + .++.+
T Consensus 109 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~--~~~~l 185 (390)
T 3o6n_A 109 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLI 185 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C--CGGGC
T ss_pred CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-c--ccccc
Confidence 355688999999999999999999976 5899999999999998665556678999999999999996544 3 36678
Q ss_pred CCCcccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcc
Q 042791 531 TNLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRR 610 (761)
Q Consensus 531 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~ 610 (761)
++|+.|+++++.... +....+|+.|+++++. +..++ .....+|+.|+++.|.+.+.
T Consensus 186 ~~L~~L~l~~n~l~~----~~~~~~L~~L~l~~n~-l~~~~------------~~~~~~L~~L~l~~n~l~~~------- 241 (390)
T 3o6n_A 186 PSLFHANVSYNLLST----LAIPIAVEELDASHNS-INVVR------------GPVNVELTILKLQHNNLTDT------- 241 (390)
T ss_dssp TTCSEEECCSSCCSE----EECCSSCSEEECCSSC-CCEEE------------CCCCSSCCEEECCSSCCCCC-------
T ss_pred cccceeecccccccc----cCCCCcceEEECCCCe-eeecc------------ccccccccEEECCCCCCccc-------
Confidence 899999988776544 2334578888887642 22111 12246889999988875321
Q ss_pred cchhHHHHHhhCCCCCCCceEEEEeeCCCCC-CchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCc
Q 042791 611 KNEKDKQLLEALQPPLNVEELWIIFYGGNIF-PKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGN 689 (761)
Q Consensus 611 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~ 689 (761)
..+..+++|+.|+++++....+ |..+..+++|+.|++++|.. +. +|.....+.+++.|++.+|
T Consensus 242 ---------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~------~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 242 ---------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VA------LNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp ---------GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC-CE------EECSSSCCTTCCEEECCSS
T ss_pred ---------HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC-cc------cCcccCCCCCCCEEECCCC
Confidence 2455678999999999987665 77889999999999999862 22 2211223457777888889
Q ss_pred cccCCCcccccCCccceeeccccccccc-CCCCCccceEeeecCCCC
Q 042791 690 EFLGIEENIIAFPKLKYLKIWATEELEE-TTDIPRLSSLTIWYCPKL 735 (761)
Q Consensus 690 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~L~~L~l~~~~~l 735 (761)
.+..+|..+..+++|++|++++|..... ...+++|++|++++|+..
T Consensus 306 ~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 306 HLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEE
T ss_pred cceecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCcc
Confidence 9988888788999999999999987654 668999999999999753
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=5e-23 Score=220.93 Aligned_cols=293 Identities=18% Similarity=0.114 Sum_probs=162.2
Q ss_pred CceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccc
Q 042791 374 VKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIP 453 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp 453 (761)
.+++.++++.+.+..+| .+..+++|++|++++|.+..- + +..+++|++|++++|.+.+ +|
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~------~---~~~l~~L~~L~Ls~N~l~~----------~~ 101 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTL------D---LSQNTNLTYLACDSNKLTN----------LD 101 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCC------C---CTTCTTCSEEECCSSCCSC----------CC
T ss_pred CCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeE------c---cccCCCCCEEECcCCCCce----------ee
Confidence 45666666666666665 566677777777766665321 1 4566677777777555442 32
Q ss_pred cchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCC
Q 042791 454 ENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNL 533 (761)
Q Consensus 454 ~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 533 (761)
++.+++|++|++++|.++.+| ++.+++|++|++++|.. ..++ +..+++|++|++++|.....+ .++.+++|
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l-~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L 172 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTL-TEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQL 172 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCC-SCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred --cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCcc-ceec--cccCCcCCEEECCCCCccccc--ccccCCcC
Confidence 556667777777777666665 66667777777776663 3342 566677777777766544444 25566666
Q ss_pred cccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccch
Q 042791 534 RTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNE 613 (761)
Q Consensus 534 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 613 (761)
+.|++++|.....+ +..+++|+.|+++++ .+..+ .+..++
T Consensus 173 ~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N-~l~~~------------~l~~l~------------------------- 212 (457)
T 3bz5_A 173 TTLDCSFNKITELD--VSQNKLLNRLNCDTN-NITKL------------DLNQNI------------------------- 212 (457)
T ss_dssp CEEECCSSCCCCCC--CTTCTTCCEEECCSS-CCSCC------------CCTTCT-------------------------
T ss_pred CEEECCCCccceec--cccCCCCCEEECcCC-cCCee------------ccccCC-------------------------
Confidence 66666665544433 444555555555532 11110 133344
Q ss_pred hHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCC-cceEEec--cCcCceEeCcc
Q 042791 614 KDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLP-LEKLVID--DLKSVKSVGNE 690 (761)
Q Consensus 614 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-l~~l~l~--~l~~L~~~~~~ 690 (761)
+|+.|++++|....+| +..+++|+.|++++|. ++.+| .+.++ ++.+.+. +++.+++.+|.
T Consensus 213 -------------~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~-l~~~~-~~~l~~L~~L~l~~n~L~~L~l~~n~ 275 (457)
T 3bz5_A 213 -------------QLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNP-LTELD-VSTLSKLTTLHCIQTDLLEIDLTHNT 275 (457)
T ss_dssp -------------TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred -------------CCCEEECcCCcccccC--ccccCCCCEEEeeCCc-CCCcC-HHHCCCCCEEeccCCCCCEEECCCCc
Confidence 4445555544444444 4445555555555553 22222 23333 4444332 34555555555
Q ss_pred ccC-CCcccccCCccceeeccccccccc------------CCCCCccceEeeecCCCCcCCCcccCCCCCccEEEEecCC
Q 042791 691 FLG-IEENIIAFPKLKYLKIWATEELEE------------TTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWGCP 757 (761)
Q Consensus 691 ~~~-~~~~~~~~~~L~~L~l~~~~~~~~------------~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 757 (761)
+.+ +| .+.+++|+.|++++|..... +..+++|++|++++|...+ ++ +.++++|+.|++++|.
T Consensus 276 ~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 276 QLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred cCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCC
Confidence 443 33 34566666666666643322 3345667777777765433 43 6677777777777765
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=9.8e-24 Score=235.82 Aligned_cols=305 Identities=15% Similarity=0.055 Sum_probs=236.9
Q ss_pred CCceEEEEEeecCCCCCccc-ccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPMS-FFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKE 451 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 451 (761)
...++.+.+..+.+..+|.. +..+++|++|++++|.+. .+++..|..+++|++|+|++|.+.+ .
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~---------~ 114 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRY---------L 114 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCC---------C
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC------CCChHHhcCCCCCCEEECCCCcCCC---------C
Confidence 35678889998888888865 578999999999998763 3344457899999999999877664 3
Q ss_pred cccchhcccccCccccCCcCCccCchh-hhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCC
Q 042791 452 IPENVGKLIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKL 530 (761)
Q Consensus 452 lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l 530 (761)
.|..++.+++|++|++++|.++.+|.. |+++++|++|++++|......|..+..+++|++|++++|.+.. ++ ++.+
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l 191 (597)
T 3oja_B 115 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLI 191 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--GGGC
T ss_pred CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--hhhh
Confidence 445578999999999999999999876 5899999999999999666667779999999999999996544 33 5678
Q ss_pred CCCcccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcc
Q 042791 531 TNLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRR 610 (761)
Q Consensus 531 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~ 610 (761)
++|+.|++++|.... +....+|+.|+++++. +..++. ....+|+.|+++.|.+.+
T Consensus 192 ~~L~~L~l~~n~l~~----l~~~~~L~~L~ls~n~-l~~~~~------------~~~~~L~~L~L~~n~l~~-------- 246 (597)
T 3oja_B 192 PSLFHANVSYNLLST----LAIPIAVEELDASHNS-INVVRG------------PVNVELTILKLQHNNLTD-------- 246 (597)
T ss_dssp TTCSEEECCSSCCSE----EECCTTCSEEECCSSC-CCEEEC------------SCCSCCCEEECCSSCCCC--------
T ss_pred hhhhhhhcccCcccc----ccCCchhheeeccCCc-cccccc------------ccCCCCCEEECCCCCCCC--------
Confidence 899999988776544 3344578888887642 222111 123578899998887532
Q ss_pred cchhHHHHHhhCCCCCCCceEEEEeeCCCCC-CchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCc
Q 042791 611 KNEKDKQLLEALQPPLNVEELWIIFYGGNIF-PKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGN 689 (761)
Q Consensus 611 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~ 689 (761)
+..+..+++|+.|++++|.+..+ |..+..+++|+.|+|++|.. +. +|.....+.+|+.|++++|
T Consensus 247 --------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~------l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 247 --------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VA------LNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp --------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC-CE------EECSSSCCTTCCEEECCSS
T ss_pred --------ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC-CC------CCcccccCCCCcEEECCCC
Confidence 13455678999999999987655 78899999999999999863 22 2322223457777888889
Q ss_pred cccCCCcccccCCccceeeccccccccc-CCCCCccceEeeecCCCC
Q 042791 690 EFLGIEENIIAFPKLKYLKIWATEELEE-TTDIPRLSSLTIWYCPKL 735 (761)
Q Consensus 690 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~L~~L~l~~~~~l 735 (761)
.+..+|..+..+++|++|++++|..... +..+++|+.|++++|+..
T Consensus 312 ~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 312 HLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEE
T ss_pred CCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCC
Confidence 9988888888999999999999987655 667999999999999853
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=2.4e-22 Score=217.75 Aligned_cols=319 Identities=20% Similarity=0.206 Sum_probs=249.7
Q ss_pred CCceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEI 452 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 452 (761)
...++.+.+..+.+..+| .+..+++|++|++++|.+.. +++ +.++++|++|++++|.+. .+
T Consensus 45 l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~------~~~--~~~l~~L~~L~l~~n~l~----------~~ 105 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTD------ITP--LKNLTKLVDILMNNNQIA----------DI 105 (466)
T ss_dssp HHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG--GTTCTTCCEEECCSSCCC----------CC
T ss_pred hccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCC------chh--hhccccCCEEECCCCccc----------cC
Confidence 357889999999988888 58899999999999987632 233 789999999999977655 35
Q ss_pred ccchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCC
Q 042791 453 PENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTN 532 (761)
Q Consensus 453 p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 532 (761)
+. +..+++|++|++++|.++.+|. +.++++|++|++++|. +..+|. +..+++|++|+++++ . ..++ .+..+++
T Consensus 106 ~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~~-~-~~~~-~~~~l~~ 178 (466)
T 1o6v_A 106 TP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQ-V-TDLK-PLANLTT 178 (466)
T ss_dssp GG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEES-C-CCCG-GGTTCTT
T ss_pred hh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCCc-c-cCch-hhccCCC
Confidence 54 8899999999999999998876 8999999999999998 555664 899999999999643 3 3333 3889999
Q ss_pred CcccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccc
Q 042791 533 LRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKN 612 (761)
Q Consensus 533 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 612 (761)
|+.|+++++.....+ .+..+++|+.|+++++. +... . .+..+++|+.|+++.|.+...
T Consensus 179 L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~------~-----~~~~l~~L~~L~l~~n~l~~~--------- 236 (466)
T 1o6v_A 179 LERLDISSNKVSDIS-VLAKLTNLESLIATNNQ-ISDI------T-----PLGILTNLDELSLNGNQLKDI--------- 236 (466)
T ss_dssp CCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCC------G-----GGGGCTTCCEEECCSSCCCCC---------
T ss_pred CCEEECcCCcCCCCh-hhccCCCCCEEEecCCc-cccc------c-----cccccCCCCEEECCCCCcccc---------
Confidence 999999988765543 36678889999988652 2211 1 145688999999988875321
Q ss_pred hhHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCcccc
Q 042791 613 EKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFL 692 (761)
Q Consensus 613 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~ 692 (761)
..+..+++|+.|++++|....++. +..+++|+.|++++|.. ..++.+..+ .+++.|++.+|.+.
T Consensus 237 -------~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~~~~l-------~~L~~L~L~~n~l~ 300 (466)
T 1o6v_A 237 -------GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQI-SNISPLAGL-------TALTNLELNENQLE 300 (466)
T ss_dssp -------GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC-CCCGGGTTC-------TTCSEEECCSSCCS
T ss_pred -------hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCcc-CccccccCC-------CccCeEEcCCCccc
Confidence 234567899999999998877655 78899999999999963 333333333 45666777778888
Q ss_pred CCCcccccCCccceeeccccccccc--CCCCCccceEeeecCCCCcCCCcccCCCCCccEEEEecCCC
Q 042791 693 GIEENIIAFPKLKYLKIWATEELEE--TTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWGCPI 758 (761)
Q Consensus 693 ~~~~~~~~~~~L~~L~l~~~~~~~~--~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~ 758 (761)
.++. +..+++|+.|++++|..... +..+++|++|++++|.. ..+ ..+.++++|+.|++++|+.
T Consensus 301 ~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 301 DISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV-SDV-SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp CCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCC-CCC-GGGTTCTTCCEEECCSSCC
T ss_pred Cchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCcc-CCc-hhhccCCCCCEEeCCCCcc
Confidence 7665 78999999999999977654 56899999999999964 444 4678999999999999975
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.6e-22 Score=223.18 Aligned_cols=338 Identities=16% Similarity=0.100 Sum_probs=229.0
Q ss_pred EEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccch
Q 042791 377 RHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENV 456 (761)
Q Consensus 377 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~ 456 (761)
+.++++.+.+..+|..+. ++|+.|++++|.+. .+++..|.++++|++|++++|.+.+ ..|..+
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~ 65 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYIS------ELWTSDILSLSKLRILIISHNRIQY---------LDISVF 65 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCC------CCCHHHHTTCTTCCEEECCSSCCCE---------EEGGGG
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCccc------ccChhhccccccccEEecCCCccCC---------cChHHh
Confidence 467777888888887665 78888888888752 2344557888888888888766554 346678
Q ss_pred hcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcc-cccccccccccccEeecCCccccccccccCCCCCCC--
Q 042791 457 GKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLR-ELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNL-- 533 (761)
Q Consensus 457 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L-- 533 (761)
+.+++|++|++++|.++.+|.. .+++|++|++++|.... .+|..++.+++|++|++++|.+.. ..+..+++|
T Consensus 66 ~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L 140 (520)
T 2z7x_B 66 KFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNI 140 (520)
T ss_dssp TTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCE
T ss_pred hcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcccccccee
Confidence 8888888888888888888876 78888888888888554 467788888888888888886543 234445555
Q ss_pred cccCceeecC---ccCCCCccC--------------------------cc------------------------------
Q 042791 534 RTLDRFVVGG---GVDGSNTCR--------------------------LE------------------------------ 554 (761)
Q Consensus 534 ~~L~l~~~~~---~~~~~~~~~--------------------------l~------------------------------ 554 (761)
+.|++.+|.. ...+..+.. ++
T Consensus 141 ~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~ 220 (520)
T 2z7x_B 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220 (520)
T ss_dssp EEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCT
T ss_pred eEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhcccc
Confidence 6666655543 111111111 11
Q ss_pred ---------------------------cccCccCCceEEEcCCCC-C-----CChhHH----------------------
Q 042791 555 ---------------------------SLKNLQLRGKCSIEGLSN-V-----SHVDEA---------------------- 579 (761)
Q Consensus 555 ---------------------------~L~~L~l~~~~~~~~~~~-~-----~~~~~l---------------------- 579 (761)
+|+.|+++++.....++. + ..++.+
T Consensus 221 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~ 300 (520)
T 2z7x_B 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300 (520)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHH
T ss_pred chhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccc
Confidence 333444443322212111 1 111111
Q ss_pred ----hhcc-----------ccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCC---C
Q 042791 580 ----ERLQ-----------LYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI---F 641 (761)
Q Consensus 580 ----~~~~-----------l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---~ 641 (761)
..+. ...+++|+.|+++.|.+.+ ..+..+..+++|+.|++++|.... +
T Consensus 301 ~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~--------------~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 366 (520)
T 2z7x_B 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD--------------TVFENCGHLTELETLILQMNQLKELSKI 366 (520)
T ss_dssp TCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT--------------TTTTTCCCCSSCCEEECCSSCCCBHHHH
T ss_pred cCceeEEEcCCCccccccchhhCCcccEEEeECCccCh--------------hhhhhhccCCCCCEEEccCCccCccccc
Confidence 1111 1577899999999887532 123455678899999999999875 4
Q ss_pred CchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccC-CCcccccCCccceeeccccccccc---
Q 042791 642 PKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLG-IEENIIAFPKLKYLKIWATEELEE--- 717 (761)
Q Consensus 642 p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~--- 717 (761)
|.++..+++|+.|++++|.....+|. -....+.+++.|++++|.+++ .|..+. ++|+.|++++|.....
T Consensus 367 ~~~~~~l~~L~~L~Ls~N~l~~~l~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~ 439 (520)
T 2z7x_B 367 AEMTTQMKSLQQLDISQNSVSYDEKK-----GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQ 439 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCBCCGGG-----CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGG
T ss_pred hHHHhhCCCCCEEECCCCcCCccccc-----chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchh
Confidence 56788999999999999974433331 111234567777777888765 443322 7999999999977643
Q ss_pred CCCCCccceEeeecCCCCcCCCcc-cCCCCCccEEEEecCCC
Q 042791 718 TTDIPRLSSLTIWYCPKLKVLPDY-LLQTTALQELRIWGCPI 758 (761)
Q Consensus 718 ~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~c~~ 758 (761)
+..+++|++|++++|. +..+|.. +..+++|++|++++|+.
T Consensus 440 ~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 440 VVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp GGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCCC
Confidence 4478999999999996 4578876 78899999999999985
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1.5e-22 Score=210.84 Aligned_cols=283 Identities=19% Similarity=0.200 Sum_probs=201.0
Q ss_pred cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcC
Q 042791 392 SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELG 471 (761)
Q Consensus 392 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~ 471 (761)
.+..+++|+.|+++++.+.. ++ . +..+++|++|++++|.+. .+|. +..+++|++|++++|.
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~------~~-~-~~~~~~L~~L~l~~n~i~----------~~~~-~~~l~~L~~L~L~~n~ 99 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS------IQ-G-IEYLTNLEYLNLNGNQIT----------DISP-LSNLVKLTNLYIGTNK 99 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC------CT-T-GGGCTTCCEEECCSSCCC----------CCGG-GTTCTTCCEEECCSSC
T ss_pred cchhcccccEEEEeCCcccc------ch-h-hhhcCCccEEEccCCccc----------cchh-hhcCCcCCEEEccCCc
Confidence 45577888888888877632 11 1 577888888888865544 3544 7778888888888888
Q ss_pred CccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcccCceeecCccCCCCcc
Q 042791 472 IERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSNTC 551 (761)
Q Consensus 472 i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~ 551 (761)
++.+| .+..+++|++|++++|. +..+|. +..+++|++|++++|.....++. +..+++|+.|++.++.....+. +.
T Consensus 100 i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~ 174 (347)
T 4fmz_A 100 ITDIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IA 174 (347)
T ss_dssp CCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GG
T ss_pred ccCch-HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hc
Confidence 87765 57888888888888877 445555 77888888888888865555443 6667777777666554333222 33
Q ss_pred CcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceE
Q 042791 552 RLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEEL 631 (761)
Q Consensus 552 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 631 (761)
.+ ++|+.|+++.|.+... ..+..+++|+.+
T Consensus 175 ~l----------------------------------~~L~~L~l~~n~l~~~----------------~~~~~l~~L~~L 204 (347)
T 4fmz_A 175 NL----------------------------------TDLYSLSLNYNQIEDI----------------SPLASLTSLHYF 204 (347)
T ss_dssp GC----------------------------------TTCSEEECTTSCCCCC----------------GGGGGCTTCCEE
T ss_pred cC----------------------------------CCCCEEEccCCccccc----------------ccccCCCcccee
Confidence 34 4444444444432110 013456789999
Q ss_pred EEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccCCCcccccCCccceeeccc
Q 042791 632 WIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLGIEENIIAFPKLKYLKIWA 711 (761)
Q Consensus 632 ~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 711 (761)
.++++....++. +..+++|++|++++|. ++.++.+..+| +++.|++.+|.++.++ .+..+++|++|++++
T Consensus 205 ~l~~n~l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~l~-------~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~ 274 (347)
T 4fmz_A 205 TAYVNQITDITP-VANMTRLNSLKIGNNK-ITDLSPLANLS-------QLTWLEIGTNQISDIN-AVKDLTKLKMLNVGS 274 (347)
T ss_dssp ECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGGGTTCT-------TCCEEECCSSCCCCCG-GGTTCTTCCEEECCS
T ss_pred ecccCCCCCCch-hhcCCcCCEEEccCCc-cCCCcchhcCC-------CCCEEECCCCccCCCh-hHhcCCCcCEEEccC
Confidence 999998877654 7889999999999996 33333344444 5566666677777764 378899999999999
Q ss_pred cccccc--CCCCCccceEeeecCCCCcCCCcccCCCCCccEEEEecCCC
Q 042791 712 TEELEE--TTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWGCPI 758 (761)
Q Consensus 712 ~~~~~~--~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~ 758 (761)
|..... +..+++|++|++++|......+..+..+++|++|++++|+.
T Consensus 275 n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 275 NQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp SCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred CccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 976543 56789999999999987767777788999999999999984
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=5.2e-23 Score=224.29 Aligned_cols=298 Identities=19% Similarity=0.140 Sum_probs=227.8
Q ss_pred CCceEEEEEeecCCCCCc-ccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFP-MSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKE 451 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 451 (761)
...++.|+++.+.+..++ ..|..+++|++|+|++|.+. .+.+..|.++++|++|+|++|.+. .
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~----------~ 94 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS------AVEPGAFNNLFNLRTLGLRSNRLK----------L 94 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCC----------S
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC------EeChhhhhCCccCCEEECCCCcCC----------c
Confidence 457899999999998874 57999999999999998763 233344789999999999976654 4
Q ss_pred ccc-chhcccccCccccCCcCCccC-chhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCC
Q 042791 452 IPE-NVGKLIHLKYLNLSELGIERL-PETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISK 529 (761)
Q Consensus 452 lp~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 529 (761)
+|. .+..+++|++|++++|.++.+ |..+..+++|++|++++|......|..+..+++|++|++++|......+..+..
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 174 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTT
T ss_pred cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcc
Confidence 554 468899999999999999855 567899999999999999866666778999999999999999765544456889
Q ss_pred CCCCcccCceeecCccCC-CCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcC
Q 042791 530 LTNLRTLDRFVVGGGVDG-SNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEG 608 (761)
Q Consensus 530 l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~ 608 (761)
+++|+.|++.++.....+ ..+..+++|+.|+++++..+..++. ......+|+.|+++.|.+....
T Consensus 175 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----------~~~~~~~L~~L~l~~n~l~~~~---- 240 (477)
T 2id5_A 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP----------NCLYGLNLTSLSITHCNLTAVP---- 240 (477)
T ss_dssp CTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT----------TTTTTCCCSEEEEESSCCCSCC----
T ss_pred cCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc----------ccccCccccEEECcCCcccccC----
Confidence 999999999988755544 3567788999998886543333221 1122348999999988753210
Q ss_pred cccchhHHHHHhhCCCCCCCceEEEEeeCCCCCC-chhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEe
Q 042791 609 RRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFP-KWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSV 687 (761)
Q Consensus 609 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~ 687 (761)
...+..+++|+.|++++|.+..++ ..+..+++|+.|++++|......+ .....+.+|+.|++.
T Consensus 241 ----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 241 ----------YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP------YAFRGLNYLRVLNVS 304 (477)
T ss_dssp ----------HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT------TTBTTCTTCCEEECC
T ss_pred ----------HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH------HHhcCcccCCEEECC
Confidence 123456789999999999877664 467889999999999996332211 122234567778888
Q ss_pred CccccCCCc-ccccCCccceeecccccccc
Q 042791 688 GNEFLGIEE-NIIAFPKLKYLKIWATEELE 716 (761)
Q Consensus 688 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 716 (761)
+|.++.++. .+..+++|++|++++|+..-
T Consensus 305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 305 GNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp SSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 899988654 46789999999999987653
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=3.7e-22 Score=206.14 Aligned_cols=284 Identities=18% Similarity=0.129 Sum_probs=163.1
Q ss_pred ceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccccc
Q 042791 375 KVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPE 454 (761)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~ 454 (761)
.++.+.++.+.+..+|..+ .++|+.|++++|.+. .+++..+.++++|++|++++|.+.+ ..|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~ 96 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDIS------ELRKDDFKGLQHLYALVLVNNKISK---------IHEK 96 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCE---------ECGG
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCC------ccCHhHhhCCCCCcEEECCCCccCc---------cCHh
Confidence 3456666667777777655 357777777777642 2233336677777888777655543 2356
Q ss_pred chhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccc--cccccCCCCCC
Q 042791 455 NVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALK--YMPIGISKLTN 532 (761)
Q Consensus 455 ~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~ 532 (761)
.++.+++|++|++++|.++.+|..+. ++|++|++++|......+..+..+++|++|++++|.... ..|..+..+ +
T Consensus 97 ~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 97 AFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp GSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred HhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 67777777888887777777776554 677777777777433333346777777777777775532 344445555 6
Q ss_pred CcccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccc
Q 042791 533 LRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKN 612 (761)
Q Consensus 533 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 612 (761)
|+.|+++++.....+.... ++|+.|+++++ .+....
T Consensus 174 L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n----------------------------------~i~~~~-------- 209 (332)
T 2ft3_A 174 LNYLRISEAKLTGIPKDLP--ETLNELHLDHN----------------------------------KIQAIE-------- 209 (332)
T ss_dssp CSCCBCCSSBCSSCCSSSC--SSCSCCBCCSS----------------------------------CCCCCC--------
T ss_pred cCEEECcCCCCCccCcccc--CCCCEEECCCC----------------------------------cCCccC--------
Confidence 6666666555444333222 34444444432 110000
Q ss_pred hhHHHHHhhCCCCCCCceEEEEeeCCCCCC-chhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccc
Q 042791 613 EKDKQLLEALQPPLNVEELWIIFYGGNIFP-KWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEF 691 (761)
Q Consensus 613 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~ 691 (761)
...+..+++|+.|++++|....++ .++..+++|+.|++++| .+
T Consensus 210 ------~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N------------------------------~l 253 (332)
T 2ft3_A 210 ------LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN------------------------------KL 253 (332)
T ss_dssp ------TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS------------------------------CC
T ss_pred ------HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC------------------------------cC
Confidence 001112223333333333333222 23444455555555544 44
Q ss_pred cCCCcccccCCccceeecccccccccC----------CCCCccceEeeecCCCC--cCCCcccCCCCCccEEEEecCCC
Q 042791 692 LGIEENIIAFPKLKYLKIWATEELEET----------TDIPRLSSLTIWYCPKL--KVLPDYLLQTTALQELRIWGCPI 758 (761)
Q Consensus 692 ~~~~~~~~~~~~L~~L~l~~~~~~~~~----------~~l~~L~~L~l~~~~~l--~~l~~~l~~l~~L~~L~l~~c~~ 758 (761)
+.+|..+..+++|++|++++|...... ...++|+.|++++|+.. ...|..+..+++|+.|++++|..
T Consensus 254 ~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 254 SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp CBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred eecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccccC
Confidence 445555666777777777777655431 12567899999999865 34556678899999999998863
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=9.7e-23 Score=218.52 Aligned_cols=336 Identities=15% Similarity=0.088 Sum_probs=152.9
Q ss_pred CCceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCC-------------cceEEeeccccc
Q 042791 373 GVKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLA-------------CLRALVISQFYI 439 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-------------~L~~L~l~~~~~ 439 (761)
...++.+.++.+.++.+|+++.++++|++|++++|.+. +.+|.. +.+++ +++.|++++|.+
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~-----~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWE-----RNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHH-----HTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCccc-----ccCCcc-cccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 34667777777777777877777777777777766531 111111 11111 234444444433
Q ss_pred cCCc----------cccccccccccchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccc
Q 042791 440 SGSH----------HEANRIKEIPENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNM 509 (761)
Q Consensus 440 ~~~~----------~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 509 (761)
++.. ..++.++.+|.. +.+|++|++++|.++.+|.. .++|++|++++|. +..+| .+..+++|
T Consensus 84 ~~lp~~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~~~~l~~L 155 (454)
T 1jl5_A 84 SSLPELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-ELQNSSFL 155 (454)
T ss_dssp SCCCSCCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-CCTTCTTC
T ss_pred ccCCCCcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-ccCCCCCC
Confidence 3210 012222233321 24455555555544443321 1355555555554 22355 25555555
Q ss_pred cEeecCCccccccccccCCCCCCCcccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhh--------
Q 042791 510 RTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAER-------- 581 (761)
Q Consensus 510 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-------- 581 (761)
++|++++|... .+|..+ .+|+.|++++|.....+ .+..+++|+.|+++++. +..++... ..+..
T Consensus 156 ~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~--~~L~~L~l~~n~l 227 (454)
T 1jl5_A 156 KIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLP--LSLESIVAGNNIL 227 (454)
T ss_dssp CEEECCSSCCS-CCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCCC--TTCCEEECCSSCC
T ss_pred CEEECCCCcCc-ccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCCc--CcccEEECcCCcC
Confidence 55555555332 233322 24555555544443333 24444444444444321 11111100 00000
Q ss_pred ---ccccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeec
Q 042791 582 ---LQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLAS 658 (761)
Q Consensus 582 ---~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~ 658 (761)
..+..+++|+.|+++.|.+.... ..+++|+.|++++|....+|.. +++|+.|++++
T Consensus 228 ~~lp~~~~l~~L~~L~l~~N~l~~l~------------------~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~ 286 (454)
T 1jl5_A 228 EELPELQNLPFLTTIYADNNLLKTLP------------------DLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSE 286 (454)
T ss_dssp SSCCCCTTCTTCCEEECCSSCCSSCC------------------SCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS
T ss_pred CcccccCCCCCCCEEECCCCcCCccc------------------ccccccCEEECCCCcccccCcc---cCcCCEEECcC
Confidence 01345667777777766543210 1135677777777776666654 36777777777
Q ss_pred CCCCCCCCCCCCCC--cceEEe------------ccCcCceEeCccccCCCcccccCCccceeecccccccccCCCCCcc
Q 042791 659 CVNCEHLPPLGKLP--LEKLVI------------DDLKSVKSVGNEFLGIEENIIAFPKLKYLKIWATEELEETTDIPRL 724 (761)
Q Consensus 659 ~~~~~~~~~~~~lp--l~~l~l------------~~l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L 724 (761)
|.. +.++ .+| ++.+++ .+++.|++++|.++++|.. +++|++|++++|........+++|
T Consensus 287 N~l-~~l~---~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~~l~~L 359 (454)
T 1jl5_A 287 NIF-SGLS---ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPELPQNL 359 (454)
T ss_dssp SCC-SEES---CCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTC
T ss_pred Ccc-Cccc---CcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccchhhhc
Confidence 752 2222 111 444433 3567778888888877653 688999999988766544467789
Q ss_pred ceEeeecCCCCc--CCCcccCCC-------------CCccEEEEecCCC
Q 042791 725 SSLTIWYCPKLK--VLPDYLLQT-------------TALQELRIWGCPI 758 (761)
Q Consensus 725 ~~L~l~~~~~l~--~l~~~l~~l-------------~~L~~L~l~~c~~ 758 (761)
++|++++|+..+ .+|..+..+ ++|+.|++++|+.
T Consensus 360 ~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp CEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred cEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 999999998766 677777766 7899999998864
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=3.3e-23 Score=235.26 Aligned_cols=143 Identities=20% Similarity=0.241 Sum_probs=117.3
Q ss_pred CCceEEEEEeecCCCCCcc-cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPM-SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKE 451 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 451 (761)
+..++.|+++.+.+..+|+ +|.++++|++|+|++|.+ ..+++..|.++++|++|+|++|.+. .
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i------~~i~~~~f~~L~~L~~L~Ls~N~l~----------~ 114 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI------QTIEDGAYQSLSHLSTLILTGNPIQ----------S 114 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC------CEECTTTTTTCTTCCEEECTTCCCC----------E
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC------CCcChhHhcCCCCCCEEEccCCcCC----------C
Confidence 4578999999999998875 799999999999999986 3445556889999999999976654 4
Q ss_pred cc-cchhcccccCccccCCcCCccCch-hhhccCCCcEEecCCccCcc-cccccccccccccEeecCCccccccccccCC
Q 042791 452 IP-ENVGKLIHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLR-ELPAGIGKLMNMRTLLNGETYALKYMPIGIS 528 (761)
Q Consensus 452 lp-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~ 528 (761)
+| ..|..+++|++|++++|.++.+|. .|+++++|++|++++|.... .+|..+..+++|++|++++|.+....|..+.
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 65 457899999999999999998886 58999999999999998544 4678889999999999999976655554444
Q ss_pred CCC
Q 042791 529 KLT 531 (761)
Q Consensus 529 ~l~ 531 (761)
.+.
T Consensus 195 ~L~ 197 (635)
T 4g8a_A 195 VLH 197 (635)
T ss_dssp HHH
T ss_pred chh
Confidence 433
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=4.1e-22 Score=221.64 Aligned_cols=328 Identities=13% Similarity=0.075 Sum_probs=194.8
Q ss_pred CceEEEEEeecCCCCCc-ccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccc
Q 042791 374 VKVRHLGLNFQRGASFP-MSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEI 452 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 452 (761)
..++.++++.+.+..++ .++..+++|++|++++|.+. .+.+..|.++++|++|++++|.+. .+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~------~~~~~~~~~l~~L~~L~Ls~N~l~----------~l 115 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR------SLDFHVFLFNQDLEYLDVSHNRLQ----------NI 115 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC------EECTTTTTTCTTCCEEECTTSCCC----------EE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC------cCCHHHhCCCCCCCEEECCCCcCC----------cc
Confidence 57778888888777776 46778888888888877652 233344677788888888855443 46
Q ss_pred ccchhcccccCccccCCcCCccCc--hhhhccCCCcEEecCCccCcccccccccccccc--cEeecCCccc--ccccccc
Q 042791 453 PENVGKLIHLKYLNLSELGIERLP--ETLCELYNLQKLDIRRCRNLRELPAGIGKLMNM--RTLLNGETYA--LKYMPIG 526 (761)
Q Consensus 453 p~~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~p~~ 526 (761)
|.. .+++|++|++++|.++.+| ..++++++|++|++++|.... ..+..+++| ++|++++|.. ....|..
T Consensus 116 p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~ 190 (562)
T 3a79_B 116 SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETES 190 (562)
T ss_dssp CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCE
T ss_pred Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCccc
Confidence 655 6778888888888877543 677888888888888776433 234444444 7777777655 3333333
Q ss_pred CCC--------------------------CCCCcccCceeecCc------------cCCC--------------------
Q 042791 527 ISK--------------------------LTNLRTLDRFVVGGG------------VDGS-------------------- 548 (761)
Q Consensus 527 l~~--------------------------l~~L~~L~l~~~~~~------------~~~~-------------------- 548 (761)
+.. +++|+.|++..+... ..+.
T Consensus 191 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~ 270 (562)
T 3a79_B 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270 (562)
T ss_dssp EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHH
T ss_pred ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHH
Confidence 322 222222222221000 0000
Q ss_pred CccCcccccCccCCceEEEcCCCC-C-----CC---------------hh--H---------Hhhc----------c-cc
Q 042791 549 NTCRLESLKNLQLRGKCSIEGLSN-V-----SH---------------VD--E---------AERL----------Q-LY 585 (761)
Q Consensus 549 ~~~~l~~L~~L~l~~~~~~~~~~~-~-----~~---------------~~--~---------l~~~----------~-l~ 585 (761)
......+|+.|+++++.....++. + .. ++ . +..+ . ..
T Consensus 271 ~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 350 (562)
T 3a79_B 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350 (562)
T ss_dssp HHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred HhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCcc
Confidence 000001333333332221111110 0 00 00 0 0000 0 14
Q ss_pred ccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCCC---chhhhhcCCcEEEeecCCCC
Q 042791 586 NKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFP---KWLTLLTNLRNLTLASCVNC 662 (761)
Q Consensus 586 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p---~~~~~l~~L~~L~l~~~~~~ 662 (761)
.+++|+.|+++.|.+.+. .+..+..+++|+.|++++|....++ ..+..+++|+.|++++|...
T Consensus 351 ~l~~L~~L~l~~n~l~~~--------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDS--------------VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp SCCCCCEEECCSSCCCTT--------------TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred CCCCceEEECCCCccccc--------------hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 567888888887775321 1233455667777777777666543 34567777777777777644
Q ss_pred CCCCC--CCCCC-cceEEe--------------ccCcCceEeCccccCCCcccccCCccceeeccccccccc----CCCC
Q 042791 663 EHLPP--LGKLP-LEKLVI--------------DDLKSVKSVGNEFLGIEENIIAFPKLKYLKIWATEELEE----TTDI 721 (761)
Q Consensus 663 ~~~~~--~~~lp-l~~l~l--------------~~l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~l 721 (761)
..+|. ...++ ++.+.+ .+++.|++++|.++.+|..+.++++|++|++++|..... +..+
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 496 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRL 496 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTC
T ss_pred CccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcC
Confidence 43432 33344 555544 357778899999999998888999999999999987643 4568
Q ss_pred CccceEeeecCCCCc
Q 042791 722 PRLSSLTIWYCPKLK 736 (761)
Q Consensus 722 ~~L~~L~l~~~~~l~ 736 (761)
++|+.|++++|+...
T Consensus 497 ~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 497 TSLQYIWLHDNPWDC 511 (562)
T ss_dssp TTCCCEECCSCCBCC
T ss_pred CCCCEEEecCCCcCC
Confidence 999999999998653
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=7.9e-22 Score=202.40 Aligned_cols=228 Identities=22% Similarity=0.259 Sum_probs=156.2
Q ss_pred cCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCccccccccc
Q 042791 425 KLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIG 504 (761)
Q Consensus 425 ~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 504 (761)
..+.++.|+|++|. ++.+|..+..+++|++|++++|.++.+|..++++++|++|++++|. +..+|..+.
T Consensus 79 ~~~~l~~L~L~~n~----------l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~ 147 (328)
T 4fcg_A 79 TQPGRVALELRSVP----------LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIA 147 (328)
T ss_dssp TSTTCCEEEEESSC----------CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGG
T ss_pred cccceeEEEccCCC----------chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHh
Confidence 45889999999554 4468888889999999999999999999999999999999999988 448898899
Q ss_pred ccccccEeecCCccccccccccCCCCCCCcccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccc
Q 042791 505 KLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQL 584 (761)
Q Consensus 505 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l 584 (761)
.+++|++|++++|.....+|..+... .+.+ .+
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~-----------------------------~~~~-------------------~~ 179 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLAST-----------------------------DASG-------------------EH 179 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEE-----------------------------C-CC-------------------CE
T ss_pred cCcCCCEEECCCCCCccccChhHhhc-----------------------------cchh-------------------hh
Confidence 99999999999988777777654320 0000 01
Q ss_pred cccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCC
Q 042791 585 YNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEH 664 (761)
Q Consensus 585 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~ 664 (761)
..+++|+.|+++.|.+.. ++..+..+++|+.|++++|....+|..+..+++|+.|++++|.
T Consensus 180 ~~l~~L~~L~L~~n~l~~---------------lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~---- 240 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIRS---------------LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT---- 240 (328)
T ss_dssp EESTTCCEEEEEEECCCC---------------CCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCT----
T ss_pred ccCCCCCEEECcCCCcCc---------------chHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCc----
Confidence 222333333333333110 0011112334444444444444444445555555555555544
Q ss_pred CCCCCCCCcceEEeccCcCceEeCccccC-CCcccccCCccceeeccccccccc----CCCCCccceEeeecCCCCcCCC
Q 042791 665 LPPLGKLPLEKLVIDDLKSVKSVGNEFLG-IEENIIAFPKLKYLKIWATEELEE----TTDIPRLSSLTIWYCPKLKVLP 739 (761)
Q Consensus 665 ~~~~~~lpl~~l~l~~l~~L~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~l~~l~ 739 (761)
+.+ +|..++++++|++|++++|..... +..+++|++|++++|+.++.+|
T Consensus 241 --------------------------~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 241 --------------------------ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp --------------------------TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred --------------------------chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 333 455567788888888888876655 4468899999999999999999
Q ss_pred cccCCCCCccEEEEecC
Q 042791 740 DYLLQTTALQELRIWGC 756 (761)
Q Consensus 740 ~~l~~l~~L~~L~l~~c 756 (761)
..+.++++|+.+++..+
T Consensus 295 ~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 295 SLIAQLPANCIILVPPH 311 (328)
T ss_dssp GGGGGSCTTCEEECCGG
T ss_pred HHHhhccCceEEeCCHH
Confidence 99999999999988765
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=6.9e-22 Score=204.03 Aligned_cols=283 Identities=15% Similarity=0.086 Sum_probs=158.2
Q ss_pred ceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccccc
Q 042791 375 KVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPE 454 (761)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~ 454 (761)
.++.++++.+.+..+|..+. +.|+.|++++|.+.. +++..+.++++|++|++++|.+.+ ..|.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~------~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~ 94 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITE------IKDGDFKNLKNLHTLILINNKISK---------ISPG 94 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCC------BCTTTTTTCTTCCEEECCSSCCCC---------BCTT
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCE------eChhhhccCCCCCEEECCCCcCCe---------eCHH
Confidence 34556666666666665543 567777777776532 222235667777777777655543 2356
Q ss_pred chhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccc--cccccCCCCCC
Q 042791 455 NVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALK--YMPIGISKLTN 532 (761)
Q Consensus 455 ~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~ 532 (761)
.+..+++|++|++++|.++.+|..+. ++|++|++++|......+..+..+++|++|++++|.... ..+..+..+++
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 95 AFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp TTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred HhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 67777777777777777777766553 677777777776444444456777777777777775432 33444555666
Q ss_pred CcccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccc
Q 042791 533 LRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKN 612 (761)
Q Consensus 533 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 612 (761)
|+.|+++++.....+.... ++|+.|++
T Consensus 173 L~~L~l~~n~l~~l~~~~~--~~L~~L~l--------------------------------------------------- 199 (330)
T 1xku_A 173 LSYIRIADTNITTIPQGLP--PSLTELHL--------------------------------------------------- 199 (330)
T ss_dssp CCEEECCSSCCCSCCSSCC--TTCSEEEC---------------------------------------------------
T ss_pred cCEEECCCCccccCCcccc--ccCCEEEC---------------------------------------------------
Confidence 6666555444333222111 23333333
Q ss_pred hhHHHHHhhCCCCCCCceEEEEeeCCCCC-CchhhhhcCCcEEEeecCCCCCCCC-CCCCCCcceEEeccCcCceEeCcc
Q 042791 613 EKDKQLLEALQPPLNVEELWIIFYGGNIF-PKWLTLLTNLRNLTLASCVNCEHLP-PLGKLPLEKLVIDDLKSVKSVGNE 690 (761)
Q Consensus 613 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~lpl~~l~l~~l~~L~~~~~~ 690 (761)
+++....+ |..+..+++|+.|++++|......+ .++ .+.+++.|++.+|.
T Consensus 200 ---------------------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 200 ---------------------DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-------NTPHLRELHLNNNK 251 (330)
T ss_dssp ---------------------TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-------GSTTCCEEECCSSC
T ss_pred ---------------------CCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-------CCCCCCEEECCCCc
Confidence 33322222 3344444555555555543111100 011 12234444444455
Q ss_pred ccCCCcccccCCccceeecccccccccC----------CCCCccceEeeecCCCCc--CCCcccCCCCCccEEEEecCC
Q 042791 691 FLGIEENIIAFPKLKYLKIWATEELEET----------TDIPRLSSLTIWYCPKLK--VLPDYLLQTTALQELRIWGCP 757 (761)
Q Consensus 691 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------~~l~~L~~L~l~~~~~l~--~l~~~l~~l~~L~~L~l~~c~ 757 (761)
++.+|..+..+++|++|++++|...... ...++|+.|++++|+... ..|..+..+++|+.+++++|.
T Consensus 252 l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 5555555666777777777776654431 124788899999998643 345567789999999999884
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=1.7e-21 Score=209.06 Aligned_cols=273 Identities=18% Similarity=0.153 Sum_probs=170.1
Q ss_pred cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcC
Q 042791 392 SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELG 471 (761)
Q Consensus 392 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~ 471 (761)
.+.++++|++|+++++.+.. ++ .+..+++|++|++++|.+.+ +| ++.+++|++|++++|.
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~------~~--~l~~l~~L~~L~Ls~n~l~~----------~~--~~~l~~L~~L~Ls~N~ 96 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD------MT--GIEKLTGLTKLICTSNNITT----------LD--LSQNTNLTYLACDSNK 96 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC------CT--TGGGCTTCSEEECCSSCCSC----------CC--CTTCTTCSEEECCSSC
T ss_pred ChhHcCCCCEEEccCCCccc------Ch--hhcccCCCCEEEccCCcCCe----------Ec--cccCCCCCEEECcCCC
Confidence 55667777777777776532 11 15667777777777655443 33 5667777777777777
Q ss_pred CccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcccCceeecCccCCCCcc
Q 042791 472 IERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSNTC 551 (761)
Q Consensus 472 i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~ 551 (761)
++.+| ++++++|++|++++|. +..+| +..+++|++|++++|.+.. ++ ++.+++|+.|++..|.
T Consensus 97 l~~~~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~--------- 159 (457)
T 3bz5_A 97 LTNLD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNK--------- 159 (457)
T ss_dssp CSCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCS---------
T ss_pred Cceee--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCC---------
Confidence 77665 6677777777777776 33344 6677777777777774433 22 5555555555554442
Q ss_pred CcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceE
Q 042791 552 RLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEEL 631 (761)
Q Consensus 552 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 631 (761)
.+..+ .+..+++|+.|+++.|.+... .+..+++|+.|
T Consensus 160 --------------~~~~~------------~~~~l~~L~~L~ls~n~l~~l-----------------~l~~l~~L~~L 196 (457)
T 3bz5_A 160 --------------KITKL------------DVTPQTQLTTLDCSFNKITEL-----------------DVSQNKLLNRL 196 (457)
T ss_dssp --------------CCCCC------------CCTTCTTCCEEECCSSCCCCC-----------------CCTTCTTCCEE
T ss_pred --------------ccccc------------ccccCCcCCEEECCCCcccee-----------------ccccCCCCCEE
Confidence 11111 123344555555555443211 13345677888
Q ss_pred EEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccCCCcccccCCccc------
Q 042791 632 WIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLGIEENIIAFPKLK------ 705 (761)
Q Consensus 632 ~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~L~------ 705 (761)
++++|....++ +..+++|+.|++++|.. +.+| ++.+ .+++.|++.+|.++++| .+.+++|+
T Consensus 197 ~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l-~~ip-~~~l-------~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 197 NCDTNNITKLD--LNQNIQLTFLDCSSNKL-TEID-VTPL-------TQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQ 263 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCSEEECCSSCC-SCCC-CTTC-------TTCSEEECCSSCCSCCC--CTTCTTCCEEECTT
T ss_pred ECcCCcCCeec--cccCCCCCEEECcCCcc-cccC-cccc-------CCCCEEEeeCCcCCCcC--HHHCCCCCEEeccC
Confidence 88877776653 77899999999999963 3344 3343 45666777778888765 44566555
Q ss_pred ----eeeccccccccc--CCCCCccceEeeecCCCCcCCCcc--------cCCCCCccEEEEecCC
Q 042791 706 ----YLKIWATEELEE--TTDIPRLSSLTIWYCPKLKVLPDY--------LLQTTALQELRIWGCP 757 (761)
Q Consensus 706 ----~L~l~~~~~~~~--~~~l~~L~~L~l~~~~~l~~l~~~--------l~~l~~L~~L~l~~c~ 757 (761)
.|++++|..... ...+++|+.|++++|..++.+|.. +.++++|++|++++|.
T Consensus 264 n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 264 TDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp CCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred CCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence 555555554333 456899999999999877665532 4456677777766664
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=7.1e-22 Score=201.56 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=33.5
Q ss_pred cCcCceEeCccccC-CCcccccCCccceeeccccccccc---CCCCCccceEeeecCCCCcC
Q 042791 680 DLKSVKSVGNEFLG-IEENIIAFPKLKYLKIWATEELEE---TTDIPRLSSLTIWYCPKLKV 737 (761)
Q Consensus 680 ~l~~L~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~---~~~l~~L~~L~l~~~~~l~~ 737 (761)
+++.|++.+|.+++ +|..+..+++|++|++++|..... ...+++|+.|++++|+.+..
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 33334444444443 555566677777777777765543 23466677777777765443
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=3.6e-21 Score=196.31 Aligned_cols=222 Identities=20% Similarity=0.172 Sum_probs=151.7
Q ss_pred CceEEEEEeecCCC---CCcccccCCCceeEEEEcc-cCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccc
Q 042791 374 VKVRHLGLNFQRGA---SFPMSFFEFDRLRSLLIYD-RSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRI 449 (761)
Q Consensus 374 ~~~~~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 449 (761)
.+++.++++.+.+. .+|..+..+++|++|++++ +.+. +.++. .+.++++|++|++++|.+.+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~-----~~~p~-~l~~l~~L~~L~Ls~n~l~~-------- 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-----GPIPP-AIAKLTQLHYLYITHTNVSG-------- 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE-----SCCCG-GGGGCTTCSEEEEEEECCEE--------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc-----ccCCh-hHhcCCCCCEEECcCCeeCC--------
Confidence 57888888888776 4777888888888888884 5432 22232 26788888888888776654
Q ss_pred cccccchhcccccCccccCCcCCc-cCchhhhccCCCcEEecCCccCcccccccccccc-cccEeecCCccccccccccC
Q 042791 450 KEIPENVGKLIHLKYLNLSELGIE-RLPETLCELYNLQKLDIRRCRNLRELPAGIGKLM-NMRTLLNGETYALKYMPIGI 527 (761)
Q Consensus 450 ~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~~p~~l 527 (761)
.+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|...+.+|..+..++ +|++|++++|.+...+|..+
T Consensus 116 -~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~ 194 (313)
T 1ogq_A 116 -AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194 (313)
T ss_dssp -ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred -cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence 57777888888888888888887 7788888888888888888886667888888887 88888888887777777777
Q ss_pred CCCCCCcccCceeecCc-cCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCC
Q 042791 528 SKLTNLRTLDRFVVGGG-VDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGE 606 (761)
Q Consensus 528 ~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~ 606 (761)
..+. |+.|++++|... ..+..+..+++|+.|++++ |.+..
T Consensus 195 ~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~----------------------------------N~l~~---- 235 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK----------------------------------NSLAF---- 235 (313)
T ss_dssp GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS----------------------------------SEECC----
T ss_pred hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC----------------------------------Cceee----
Confidence 6665 777776665533 2222333444444444443 33210
Q ss_pred cCcccchhHHHHHhhCCCCCCCceEEEEeeCCC-CCCchhhhhcCCcEEEeecCC
Q 042791 607 EGRRKNEKDKQLLEALQPPLNVEELWIIFYGGN-IFPKWLTLLTNLRNLTLASCV 660 (761)
Q Consensus 607 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~ 660 (761)
....+..+++|+.|++++|.+. .+|.++..+++|+.|++++|.
T Consensus 236 -----------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 236 -----------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp -----------BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred -----------ecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 0011233456666666666654 557777777777777777775
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=1.1e-20 Score=202.41 Aligned_cols=301 Identities=20% Similarity=0.164 Sum_probs=146.5
Q ss_pred CCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhccccc------------
Q 042791 395 EFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHL------------ 462 (761)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L------------ 462 (761)
..+.|+.|.++++.+ +.+|.. +.++++|++|++++|.+.+ .+|..++.+.+|
T Consensus 9 ~~~~L~~L~l~~n~l------~~iP~~-i~~L~~L~~L~l~~n~~~~---------~~p~~~~~l~~L~~l~l~~c~~~~ 72 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL------TEMPVE-AENVKSKTEYYNAWSEWER---------NAPPGNGEQREMAVSRLRDCLDRQ 72 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHH---------TSCTTSCCCHHHHHHHHHHHHHHT
T ss_pred ccccchhhhcccCch------hhCChh-HhcccchhhhhccCCcccc---------cCCcccccchhcchhhhhhhhccC
Confidence 468899999998875 455555 7899999999999988765 455555544432
Q ss_pred -CccccCCcCCccCchhhhccCCCcEEecCCccCcccccccc----------------cc-cccccEeecCCcccccccc
Q 042791 463 -KYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGI----------------GK-LMNMRTLLNGETYALKYMP 524 (761)
Q Consensus 463 -~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~----------------~~-l~~L~~L~l~~~~~~~~~p 524 (761)
++|++++|.++.+|.. .++|++|++++|.. ..+|..+ .. .++|++|++++|... .+|
T Consensus 73 l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l-~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~-~lp 147 (454)
T 1jl5_A 73 AHELELNNLGLSSLPEL---PPHLESLVASCNSL-TELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLP 147 (454)
T ss_dssp CSEEECTTSCCSCCCSC---CTTCSEEECCSSCC-SSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SCC
T ss_pred CCEEEecCCccccCCCC---cCCCCEEEccCCcC-CccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCC-CCc
Confidence 5566666655555442 24455555555442 2233211 01 146666666666443 355
Q ss_pred ccCCCCCCCcccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCC
Q 042791 525 IGISKLTNLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGE 604 (761)
Q Consensus 525 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~ 604 (761)
.++.+++|+.|++++|.....+.. ..+|+.|+++++ .+..++ .+..+++|+.|+++.|.+....
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n-~l~~l~-----------~~~~l~~L~~L~l~~N~l~~l~ 211 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNN-QLEELP-----------ELQNLPFLTAIYADNNSLKKLP 211 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSSCC-----------CCTTCTTCCEEECCSSCCSSCC
T ss_pred -ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCC-cCCcCc-----------cccCCCCCCEEECCCCcCCcCC
Confidence 466777777777766665544432 236666666653 222222 2455667777777766643211
Q ss_pred CCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCC-cceEEe-----
Q 042791 605 GEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLP-LEKLVI----- 678 (761)
Q Consensus 605 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-l~~l~l----- 678 (761)
..+.+|+.|++++|....+|. +..+++|+.|++++|.. +.+|.. .+ ++.+++
T Consensus 212 ------------------~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l-~~l~~~--~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 212 ------------------DLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLL-KTLPDL--PPSLEALNVRDNYL 269 (454)
T ss_dssp ------------------CCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCC-SSCCSC--CTTCCEEECCSSCC
T ss_pred ------------------CCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcC-Cccccc--ccccCEEECCCCcc
Confidence 011345555555555554453 44555555555555431 222210 01 222222
Q ss_pred -------ccCcCceEeCccccCCCcc----------------cccC-CccceeecccccccccCCCCCccceEeeecCCC
Q 042791 679 -------DDLKSVKSVGNEFLGIEEN----------------IIAF-PKLKYLKIWATEELEETTDIPRLSSLTIWYCPK 734 (761)
Q Consensus 679 -------~~l~~L~~~~~~~~~~~~~----------------~~~~-~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~ 734 (761)
.+++.|++++|.++++|.. +..+ ++|++|++++|........+++|++|++++|.
T Consensus 270 ~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~- 348 (454)
T 1jl5_A 270 TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNH- 348 (454)
T ss_dssp SCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-
T ss_pred cccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCCc-
Confidence 1233344444444432210 0112 46777777776655544456778888888775
Q ss_pred CcCCCcccCCCCCccEEEEecCCC
Q 042791 735 LKVLPDYLLQTTALQELRIWGCPI 758 (761)
Q Consensus 735 l~~l~~~l~~l~~L~~L~l~~c~~ 758 (761)
+..+|. .+++|+.|++++|+.
T Consensus 349 l~~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 349 LAEVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CSCCCC---CCTTCCEEECCSSCC
T ss_pred cccccc---hhhhccEEECCCCCC
Confidence 445665 367888888888764
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=2.1e-20 Score=212.14 Aligned_cols=143 Identities=23% Similarity=0.135 Sum_probs=116.2
Q ss_pred ecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccc-cchhcccc
Q 042791 383 FQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIP-ENVGKLIH 461 (761)
Q Consensus 383 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp-~~~~~l~~ 461 (761)
......+|..+. +.++.|+|++|.+ ..+++..|.++++|++|+|++|.+. .+| ..|.++++
T Consensus 40 ~~~l~~vP~~lp--~~~~~LdLs~N~i------~~l~~~~f~~l~~L~~L~Ls~N~i~----------~i~~~~f~~L~~ 101 (635)
T 4g8a_A 40 ELNFYKIPDNLP--FSTKNLDLSFNPL------RHLGSYSFFSFPELQVLDLSRCEIQ----------TIEDGAYQSLSH 101 (635)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTSCC------CEECTTTTTTCTTCCEEECTTCCCC----------EECTTTTTTCTT
T ss_pred CCCcCccCCCCC--cCCCEEEeeCCCC------CCCCHHHHhCCCCCCEEECCCCcCC----------CcChhHhcCCCC
Confidence 335667886653 4799999999986 3445556899999999999977654 454 46899999
Q ss_pred cCccccCCcCCccCch-hhhccCCCcEEecCCccCccccc-ccccccccccEeecCCccccc-cccccCCCCCCCcccCc
Q 042791 462 LKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLRELP-AGIGKLMNMRTLLNGETYALK-YMPIGISKLTNLRTLDR 538 (761)
Q Consensus 462 L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l 538 (761)
|++|+|++|.++.+|. .|.++.+|++|++++|.. ..+| ..|+.+++|++|++++|.+.. ..|..++.+++|+.|++
T Consensus 102 L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 102 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp CCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC-CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence 9999999999998885 589999999999999984 4555 458999999999999997654 46778899999999999
Q ss_pred eeecCc
Q 042791 539 FVVGGG 544 (761)
Q Consensus 539 ~~~~~~ 544 (761)
++|...
T Consensus 181 ~~N~l~ 186 (635)
T 4g8a_A 181 SSNKIQ 186 (635)
T ss_dssp CSSCCC
T ss_pred cCcccc
Confidence 887643
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=1.5e-19 Score=199.58 Aligned_cols=256 Identities=18% Similarity=0.166 Sum_probs=162.2
Q ss_pred cceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccc
Q 042791 428 CLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLM 507 (761)
Q Consensus 428 ~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 507 (761)
++++|++++|. ++.+|..+. ++|++|++++|.++.+|. .+++|++|+|++|. +..+|. .++
T Consensus 41 ~l~~L~ls~n~----------L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~ 101 (622)
T 3g06_A 41 GNAVLNVGESG----------LTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPP 101 (622)
T ss_dssp CCCEEECCSSC----------CSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCT
T ss_pred CCcEEEecCCC----------cCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCC
Confidence 46666666333 334555443 566666666666666665 45666666666665 444554 456
Q ss_pred cccEeecCCccccccccccCCCCCCCcccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhcccccc
Q 042791 508 NMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNK 587 (761)
Q Consensus 508 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~ 587 (761)
+|++|++++|.+ ..+|. .+++|+.|++++|.....+.. +++|+.|++++| .+..++. ..
T Consensus 102 ~L~~L~Ls~N~l-~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~-------------~~ 160 (622)
T 3g06_A 102 GLLELSIFSNPL-THLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA-------------LP 160 (622)
T ss_dssp TCCEEEECSCCC-CCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC-------------CC
T ss_pred CCCEEECcCCcC-CCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC-------------cc
Confidence 666666666632 33443 345566666665554444432 355666666643 2222211 12
Q ss_pred CCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCC
Q 042791 588 KNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPP 667 (761)
Q Consensus 588 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~ 667 (761)
.+|+.|.++.|.+.... ..+++|+.|++++|.+..+|.. +++|+.|++++|. ++.+|.
T Consensus 161 ~~L~~L~L~~N~l~~l~------------------~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~-l~~l~~ 218 (622)
T 3g06_A 161 SELCKLWAYNNQLTSLP------------------MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNR-LTSLPA 218 (622)
T ss_dssp TTCCEEECCSSCCSCCC------------------CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCC
T ss_pred CCCCEEECCCCCCCCCc------------------ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCc-ccccCC
Confidence 45666666655532210 2356788888888887777754 4788899998885 333331
Q ss_pred CCCCCcceEEeccCcCceEeCccccCCCcccccCCccceeecccccccccCCCCCccceEeeecCCCCcCCCcccCCCCC
Q 042791 668 LGKLPLEKLVIDDLKSVKSVGNEFLGIEENIIAFPKLKYLKIWATEELEETTDIPRLSSLTIWYCPKLKVLPDYLLQTTA 747 (761)
Q Consensus 668 ~~~lpl~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~ 747 (761)
. +.+++.|++++|.++.+| ..+++|++|++++|.+......+++|++|++++|. +..+|..+.++++
T Consensus 219 ~---------~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~-L~~lp~~l~~l~~ 285 (622)
T 3g06_A 219 L---------PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSS 285 (622)
T ss_dssp C---------CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CCSCCGGGGGSCT
T ss_pred C---------CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCC-CCcCCHHHhhccc
Confidence 1 246777777788888877 46789999999998776655577899999999995 4588888899999
Q ss_pred ccEEEEecCCC
Q 042791 748 LQELRIWGCPI 758 (761)
Q Consensus 748 L~~L~l~~c~~ 758 (761)
|+.|+|++|+.
T Consensus 286 L~~L~L~~N~l 296 (622)
T 3g06_A 286 ETTVNLEGNPL 296 (622)
T ss_dssp TCEEECCSCCC
T ss_pred cCEEEecCCCC
Confidence 99999999975
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1e-20 Score=194.12 Aligned_cols=128 Identities=28% Similarity=0.421 Sum_probs=80.0
Q ss_pred ccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccc
Q 042791 424 SKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGI 503 (761)
Q Consensus 424 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~ 503 (761)
.++++|++|++++|.+ ..+|..++.+++|++|++++|.++.+|..+.++++|++|++++|+..+.+|..+
T Consensus 101 ~~l~~L~~L~L~~n~l----------~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGL----------MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp GGGTTCSEEEEESSCC----------CCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred hhCCCCCEEECCCCCc----------cchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhH
Confidence 3466666666664433 246666667777777777777777777777777777777777776666666655
Q ss_pred cc---------cccccEeecCCccccccccccCCCCCCCcccCceeecCccCCCCccCcccccCccCC
Q 042791 504 GK---------LMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSNTCRLESLKNLQLR 562 (761)
Q Consensus 504 ~~---------l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 562 (761)
.. +++|++|++++|.+. .+|..++.+++|+.|++++|.....+..+..+++|+.|+++
T Consensus 171 ~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 171 ASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred hhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 43 677777777776443 66666666666666666665544444334444444444444
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=1.2e-22 Score=220.74 Aligned_cols=361 Identities=15% Similarity=0.078 Sum_probs=233.0
Q ss_pred CCceEEEEEeecCCCCCc--ccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccc
Q 042791 373 GVKVRHLGLNFQRGASFP--MSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIK 450 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 450 (761)
+..++.++++.+.+...+ ..+..+++|+.|++++|.+.... ....+..+..+++|++|++++|.+.. ..+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~--~~~l~~~l~~~~~L~~L~Ls~n~l~~-----~~~~ 74 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR--CKDISSALRVNPALAELNLRSNELGD-----VGVH 74 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHH--HHHHHHHHHTCTTCCEEECTTCCCHH-----HHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHH--HHHHHHHHHhCCCcCEEeCCCCcCCh-----HHHH
Confidence 346788899888776443 23678999999999998753211 11234557888999999999877653 1111
Q ss_pred ccccchhccc-ccCccccCCcCCc-----cCchhhhccCCCcEEecCCccCcccccccc-----cccccccEeecCCccc
Q 042791 451 EIPENVGKLI-HLKYLNLSELGIE-----RLPETLCELYNLQKLDIRRCRNLRELPAGI-----GKLMNMRTLLNGETYA 519 (761)
Q Consensus 451 ~lp~~~~~l~-~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~-----~~l~~L~~L~l~~~~~ 519 (761)
.+...+.... +|++|++++|.++ .+|..+..+++|++|++++|......+..+ ...++|++|++++|.+
T Consensus 75 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 75 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence 2222222111 6999999999987 467888999999999999998544333333 2356799999999976
Q ss_pred ccc----ccccCCCCCCCcccCceeecCccCCC-Ccc-----CcccccCccCCceEEEcCCCCCCChhHHhhccccccCC
Q 042791 520 LKY----MPIGISKLTNLRTLDRFVVGGGVDGS-NTC-----RLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKN 589 (761)
Q Consensus 520 ~~~----~p~~l~~l~~L~~L~l~~~~~~~~~~-~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 589 (761)
... ++..+..+++|+.|++++|....... .+. ..++|+.|++++|. +.. ... ......+..+++
T Consensus 155 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~----~~~-~~l~~~l~~~~~ 228 (461)
T 1z7x_W 155 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTS----DNC-RDLCGIVASKAS 228 (461)
T ss_dssp BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBT----THH-HHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcH----HHH-HHHHHHHHhCCC
Confidence 543 45556778899999998876433210 111 23488888888752 221 000 011223557899
Q ss_pred CCcEEEEeecccCCCCCcCcccchhHHHHHhh-CCCCCCCceEEEEeeCCCC-----CCchhhhhcCCcEEEeecCCCCC
Q 042791 590 LLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEA-LQPPLNVEELWIIFYGGNI-----FPKWLTLLTNLRNLTLASCVNCE 663 (761)
Q Consensus 590 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~ 663 (761)
|+.|+++.|.+.+ .....+... ...+++|+.|++++|.... ++..+..+++|++|++++|...+
T Consensus 229 L~~L~Ls~n~l~~----------~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 229 LRELALGSNKLGD----------VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp CCEEECCSSBCHH----------HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred ccEEeccCCcCCh----------HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 9999998876421 112222232 3357899999999998765 56777789999999999985211
Q ss_pred CCC-CCCCCCcceEEeccCcCceEeCccccC-----CCcccccCCccceeeccccccccc--------CC-CCCccceEe
Q 042791 664 HLP-PLGKLPLEKLVIDDLKSVKSVGNEFLG-----IEENIIAFPKLKYLKIWATEELEE--------TT-DIPRLSSLT 728 (761)
Q Consensus 664 ~~~-~~~~lpl~~l~l~~l~~L~~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~--------~~-~l~~L~~L~ 728 (761)
..+ .+... +. -...+++.|++.+|.++. ++..+..+++|++|++++|..... +. ..++|++|+
T Consensus 299 ~~~~~l~~~-l~-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 299 EGARLLCET-LL-EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHHHHH-HT-STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHHHHHH-hc-cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence 000 00000 00 001245555555666554 344456778999999999866543 11 267899999
Q ss_pred eecCCCCc----CCCcccCCCCCccEEEEecCCC
Q 042791 729 IWYCPKLK----VLPDYLLQTTALQELRIWGCPI 758 (761)
Q Consensus 729 l~~~~~l~----~l~~~l~~l~~L~~L~l~~c~~ 758 (761)
+++|.... .+|..+..+++|++|++++|+.
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 99997654 6677777889999999999864
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=6.3e-20 Score=189.39 Aligned_cols=262 Identities=16% Similarity=0.111 Sum_probs=169.7
Q ss_pred cceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccCc-hhhhccCCCcEEecCCccCccccccccccc
Q 042791 428 CLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERLP-ETLCELYNLQKLDIRRCRNLRELPAGIGKL 506 (761)
Q Consensus 428 ~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 506 (761)
+|+.++++++ .++.+|..+ .++|++|++++|.++.++ ..+.++++|++|++++|......|..+..+
T Consensus 34 ~l~~l~~~~~----------~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 101 (332)
T 2ft3_A 34 HLRVVQCSDL----------GLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101 (332)
T ss_dssp ETTEEECCSS----------CCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred cCCEEECCCC----------CccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence 5777777743 344566554 357788888888777664 467778888888888777555556677778
Q ss_pred ccccEeecCCccccccccccCCCCCCCcccCceeecCccCCCC-ccCcccccCccCCceEEEcCCCCCCChhHHhhcccc
Q 042791 507 MNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSN-TCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLY 585 (761)
Q Consensus 507 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~ 585 (761)
++|++|++++|.+ ..+|..+. ++|++|++++|.....+.. +..+++|+.|++++
T Consensus 102 ~~L~~L~L~~n~l-~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~---------------------- 156 (332)
T 2ft3_A 102 RKLQKLYISKNHL-VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG---------------------- 156 (332)
T ss_dssp TTCCEEECCSSCC-CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS----------------------
T ss_pred CCCCEEECCCCcC-CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCC----------------------
Confidence 8888888877744 35565543 6677777666654444332 34455555555553
Q ss_pred ccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCC
Q 042791 586 NKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHL 665 (761)
Q Consensus 586 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~ 665 (761)
|.+... ......+..+ +|+.|+++++....+|..+. ++|++|++++|......
T Consensus 157 ------------n~l~~~------------~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~ 209 (332)
T 2ft3_A 157 ------------NPLENS------------GFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIE 209 (332)
T ss_dssp ------------CCCBGG------------GSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCC
T ss_pred ------------CccccC------------CCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccC
Confidence 332100 0001112223 66777777777766776553 78999999988532221
Q ss_pred CCCCCCCcceEEeccCcCceEeCccccCCC-cccccCCccceeeccccccccc---CCCCCccceEeeecCCCCcCCCcc
Q 042791 666 PPLGKLPLEKLVIDDLKSVKSVGNEFLGIE-ENIIAFPKLKYLKIWATEELEE---TTDIPRLSSLTIWYCPKLKVLPDY 741 (761)
Q Consensus 666 ~~~~~lpl~~l~l~~l~~L~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~---~~~l~~L~~L~l~~~~~l~~l~~~ 741 (761)
+ -....+.+++.|++.+|.+..++ ..+..+++|++|++++|..... +..+++|++|++++|.....-+..
T Consensus 210 ~------~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 210 L------EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp T------TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred H------HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhH
Confidence 1 11123457788888889888854 4688999999999999977643 557899999999999754432222
Q ss_pred cCC------CCCccEEEEecCCCC
Q 042791 742 LLQ------TTALQELRIWGCPIL 759 (761)
Q Consensus 742 l~~------l~~L~~L~l~~c~~l 759 (761)
+.. .+.|+.|++++||..
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ccccccccccccccceEeecCccc
Confidence 322 578999999999853
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=2.1e-21 Score=218.03 Aligned_cols=370 Identities=14% Similarity=0.069 Sum_probs=171.6
Q ss_pred ceEEEEEeecCCCCC-cccccC-CCc-eeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccc
Q 042791 375 KVRHLGLNFQRGASF-PMSFFE-FDR-LRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKE 451 (761)
Q Consensus 375 ~~~~l~~~~~~~~~~-~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 451 (761)
.++.|+++.+.+... +..+.. ++. |++|++.+|. .+.......+..++++|++|+|++|.+.+. +...
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-----~~~~ 183 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS----GFTTDGLLSIVTHCRKIKTLLMEESSFSEK-----DGKW 183 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE----EEEHHHHHHHHHHCTTCSEEECTTCEEECC-----CSHH
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC----CcCHHHHHHHHhhCCCCCEEECccccccCc-----chhH
Confidence 455555555543311 112222 333 6666666554 112222333445666666666666655421 1111
Q ss_pred cccchhcccccCccccCCcCCc-----cCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCcccc---ccc
Q 042791 452 IPENVGKLIHLKYLNLSELGIE-----RLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYAL---KYM 523 (761)
Q Consensus 452 lp~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~---~~~ 523 (761)
++..+..+++|++|++++|.++ .++..+.++++|++|++++|. ...+|..+..+++|++|+++.+... ...
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHH
Confidence 2233345566666666666654 334445566666666666655 3345555566666666666543221 122
Q ss_pred cccCCCCCCCcccCceeecCccCCCCccCcccccCccCCceEEEcCCCC---CCChhHHhh-------------cccccc
Q 042791 524 PIGISKLTNLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSN---VSHVDEAER-------------LQLYNK 587 (761)
Q Consensus 524 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~l~~-------------~~l~~~ 587 (761)
+..+..+++|+.|++..+.....+..+..+++|+.|++++|. +..... +..++++.. .....|
T Consensus 263 ~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341 (592)
T ss_dssp SSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhC
Confidence 233455555555555444333334444455566666655443 111000 001111111 112345
Q ss_pred CCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCC-CCchhh-hhcCCcEEEeec---CCCC
Q 042791 588 KNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI-FPKWLT-LLTNLRNLTLAS---CVNC 662 (761)
Q Consensus 588 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~-~l~~L~~L~l~~---~~~~ 662 (761)
++|+.|+++.+........ ................+++|+.|.+..+..+. .+..+. .+++|++|++++ |..+
T Consensus 342 ~~L~~L~L~~g~~~~~~~~--~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMED--EEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp TTCCEEEEECCCCSSTTSS--TTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred CCCCEEEeecCcccccccc--ccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 6677776662000000000 00001122222223346677777775544322 122333 377888888874 3333
Q ss_pred CCCCCCCCCCcceEEeccCcCceEeCcc--ccC--CCcccccCCccceeeccccccccc-----CCCCCccceEeeecCC
Q 042791 663 EHLPPLGKLPLEKLVIDDLKSVKSVGNE--FLG--IEENIIAFPKLKYLKIWATEELEE-----TTDIPRLSSLTIWYCP 733 (761)
Q Consensus 663 ~~~~~~~~lpl~~l~l~~l~~L~~~~~~--~~~--~~~~~~~~~~L~~L~l~~~~~~~~-----~~~l~~L~~L~l~~~~ 733 (761)
+..|.-..++.-...+.+|+.|++..+. ++. .......+++|++|++++|..... ...+++|++|++++|.
T Consensus 420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 3322100011001113344444443221 222 111123467777777777765432 3567777777777776
Q ss_pred CCc-CCCcccCCCCCccEEEEecCC
Q 042791 734 KLK-VLPDYLLQTTALQELRIWGCP 757 (761)
Q Consensus 734 ~l~-~l~~~l~~l~~L~~L~l~~c~ 757 (761)
... .++..+..+++|++|+|++|+
T Consensus 500 l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 500 FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CcHHHHHHHHHhcCccCeeECcCCc
Confidence 322 233334467777778877776
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=7.3e-20 Score=190.67 Aligned_cols=174 Identities=17% Similarity=0.136 Sum_probs=100.9
Q ss_pred CcceEEeeccccccCCcccccccccccc-chhcccccCccccCCcCCccCc-hhhhccCCCcEEecCCccCccccccc-c
Q 042791 427 ACLRALVISQFYISGSHHEANRIKEIPE-NVGKLIHLKYLNLSELGIERLP-ETLCELYNLQKLDIRRCRNLRELPAG-I 503 (761)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~-~ 503 (761)
++|++|++++|.+. .+|. .+..+++|++|++++|.++.++ ..+.++++|++|++++|. +..+|.. +
T Consensus 52 ~~L~~L~l~~n~i~----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 120 (353)
T 2z80_A 52 EAVKSLDLSNNRIT----------YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWF 120 (353)
T ss_dssp TTCCEEECTTSCCC----------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHH
T ss_pred ccCcEEECCCCcCc----------ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHh
Confidence 46777777754443 3333 4666677777777777766543 456667777777777766 3344443 5
Q ss_pred cccccccEeecCCccccccccc--cCCCCCCCcccCceeec-CccC-CCCccCcccccCccCCceEEEcCCCCCCChhHH
Q 042791 504 GKLMNMRTLLNGETYALKYMPI--GISKLTNLRTLDRFVVG-GGVD-GSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEA 579 (761)
Q Consensus 504 ~~l~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~-~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 579 (761)
..+++|++|++++|.+. .+|. .+..+++|+.|++++|. .... +..
T Consensus 121 ~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~------------------------------ 169 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD------------------------------ 169 (353)
T ss_dssp TTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTT------------------------------
T ss_pred CCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHH------------------------------
Confidence 66777777777766433 3443 45566666666665542 1111 112
Q ss_pred hhccccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCCCchh-hhhcCCcEEEeec
Q 042791 580 ERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWL-TLLTNLRNLTLAS 658 (761)
Q Consensus 580 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~-~~l~~L~~L~l~~ 658 (761)
+..+++|+.|+++.|.+... .+..+..+++|+.|+++++....+|..+ ..+++|+.|++++
T Consensus 170 ----~~~l~~L~~L~l~~n~l~~~--------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 170 ----FAGLTFLEELEIDASDLQSY--------------EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231 (353)
T ss_dssp ----TTTCCEEEEEEEEETTCCEE--------------CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEES
T ss_pred ----ccCCCCCCEEECCCCCcCcc--------------CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCC
Confidence 23344555555555442110 1123445667888888888776665543 3578888888888
Q ss_pred CC
Q 042791 659 CV 660 (761)
Q Consensus 659 ~~ 660 (761)
|.
T Consensus 232 n~ 233 (353)
T 2z80_A 232 TD 233 (353)
T ss_dssp CB
T ss_pred Cc
Confidence 75
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=6.3e-19 Score=189.40 Aligned_cols=231 Identities=19% Similarity=0.173 Sum_probs=118.9
Q ss_pred ccccccccchhcccccCccccCCcCCccCc-hhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccc
Q 042791 447 NRIKEIPENVGKLIHLKYLNLSELGIERLP-ETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPI 525 (761)
Q Consensus 447 ~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~ 525 (761)
..++.+|..+. +++++|++++|.++.++ ..|.++++|++|+|++|......+..+..+++|++|++++|.+....+.
T Consensus 53 ~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 130 (440)
T 3zyj_A 53 KNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130 (440)
T ss_dssp CCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred CCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHh
Confidence 34445555442 45666666666666443 4556666666666666653333334556666666666666644332223
Q ss_pred cCCCCCCCcccCceeecCccCCC-CccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCC
Q 042791 526 GISKLTNLRTLDRFVVGGGVDGS-NTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGE 604 (761)
Q Consensus 526 ~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~ 604 (761)
.+..+++|+.|++++|.....+. .+..+++|+.|+++++..+..+
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i---------------------------------- 176 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI---------------------------------- 176 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE----------------------------------
T ss_pred HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee----------------------------------
Confidence 45555555555555544332221 2233344444443321111000
Q ss_pred CCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCc
Q 042791 605 GEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSV 684 (761)
Q Consensus 605 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L 684 (761)
-+..+..+++|+.|++++|. ++.+|.+..++ +|+.|
T Consensus 177 ------------------------------------~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~-------~L~~L 212 (440)
T 3zyj_A 177 ------------------------------------SEGAFEGLSNLRYLNLAMCN-LREIPNLTPLI-------KLDEL 212 (440)
T ss_dssp ------------------------------------CTTTTTTCSSCCEEECTTSC-CSSCCCCTTCS-------SCCEE
T ss_pred ------------------------------------CcchhhcccccCeecCCCCc-CccccccCCCc-------ccCEE
Confidence 01123344445555554442 22333222222 33333
Q ss_pred eEeCccccC-CCcccccCCccceeeccccccccc----CCCCCccceEeeecCCCCcCCCcccCCCCCccEEEEecCC
Q 042791 685 KSVGNEFLG-IEENIIAFPKLKYLKIWATEELEE----TTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWGCP 757 (761)
Q Consensus 685 ~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 757 (761)
++++|.++. .|..+.++++|++|++++|.+... +..+++|++|+|++|......+..+..+++|+.|+|++||
T Consensus 213 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 444444444 344566777777777777765543 4467778888888775443333345677888888888776
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=5.4e-19 Score=190.62 Aligned_cols=229 Identities=22% Similarity=0.202 Sum_probs=123.2
Q ss_pred cccccccchhcccccCccccCCcCCccC-chhhhccCCCcEEecCCccCcccccccccccccccEeecCCcccccccccc
Q 042791 448 RIKEIPENVGKLIHLKYLNLSELGIERL-PETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIG 526 (761)
Q Consensus 448 ~l~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~ 526 (761)
.++.+|..+. ++|++|++++|.++.+ |..|.++++|++|+|++|......|..+..+++|++|++++|.+....+..
T Consensus 65 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 142 (452)
T 3zyi_A 65 GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA 142 (452)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTT
T ss_pred CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhh
Confidence 3444554432 4566666666666544 345566666666666666543333445566666666666666443332333
Q ss_pred CCCCCCCcccCceeecCccCCC-CccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCC
Q 042791 527 ISKLTNLRTLDRFVVGGGVDGS-NTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEG 605 (761)
Q Consensus 527 l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~ 605 (761)
+..+++|+.|++++|.....+. .+..+++|+.|+++++..+.
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~------------------------------------- 185 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE------------------------------------- 185 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC-------------------------------------
T ss_pred hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc-------------------------------------
Confidence 5555555555555444332221 22333444444333211110
Q ss_pred CcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCC-CchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCc
Q 042791 606 EEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIF-PKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSV 684 (761)
Q Consensus 606 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L 684 (761)
.+ +..+..+++|+.|++++|. ++.+|.+..++ +++.|
T Consensus 186 ----------------------------------~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~-------~L~~L 223 (452)
T 3zyi_A 186 ----------------------------------YISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLV-------GLEEL 223 (452)
T ss_dssp ----------------------------------EECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCT-------TCCEE
T ss_pred ----------------------------------ccChhhccCCCCCCEEECCCCc-ccccccccccc-------cccEE
Confidence 01 1223344555555555553 22333332222 33444
Q ss_pred eEeCccccC-CCcccccCCccceeeccccccccc----CCCCCccceEeeecCCCCcCCCcccCCCCCccEEEEecCC
Q 042791 685 KSVGNEFLG-IEENIIAFPKLKYLKIWATEELEE----TTDIPRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWGCP 757 (761)
Q Consensus 685 ~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 757 (761)
++++|.+.. .|..+.++++|++|++++|..... +..+++|+.|++++|......+..+..+++|+.|+|++||
T Consensus 224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 444455555 355577888888888888876544 5567888888888886443333446678888889888887
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=2.5e-19 Score=182.67 Aligned_cols=146 Identities=21% Similarity=0.165 Sum_probs=89.2
Q ss_pred EEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchh
Q 042791 378 HLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVG 457 (761)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~ 457 (761)
.+....+.+..+|..+. ++|+.|++++|.+. .++..+|.++++|++|++++|.+.. +...|..+.
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~------~i~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~~ 75 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQ------SLPHGVFDKLTQLTKLSLSSNGLSF-------KGCCSQSDF 75 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCC------CCCTTTTTTCTTCSEEECCSSCCCE-------EEEEEHHHH
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccC------ccCHhHhhccccCCEEECCCCccCc-------ccCcccccc
Confidence 45555566667775543 57777777777653 2333345677777777777665432 112244555
Q ss_pred cccccCccccCCcCCccCchhhhccCCCcEEecCCccCccccc--ccccccccccEeecCCccccccccccCCCCCCCcc
Q 042791 458 KLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELP--AGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRT 535 (761)
Q Consensus 458 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 535 (761)
.+++|++|++++|.+..+|..+..+++|++|++++|. +..++ ..+..+++|++|++++|......+..+..+++|+.
T Consensus 76 ~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp SCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred cccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 6777777777777777777777777777777777776 33333 35667777777777777554444444444444444
Q ss_pred cCce
Q 042791 536 LDRF 539 (761)
Q Consensus 536 L~l~ 539 (761)
|+++
T Consensus 155 L~l~ 158 (306)
T 2z66_A 155 LKMA 158 (306)
T ss_dssp EECT
T ss_pred EECC
Confidence 4433
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=2.5e-19 Score=184.76 Aligned_cols=263 Identities=14% Similarity=0.137 Sum_probs=178.3
Q ss_pred cCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccCch-hhhccCCCcEEecCCccCcccccccc
Q 042791 425 KLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLRELPAGI 503 (761)
Q Consensus 425 ~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~ 503 (761)
+..+|++++++++ .++.+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|......|..+
T Consensus 29 c~c~l~~l~~~~~----------~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (330)
T 1xku_A 29 CQCHLRVVQCSDL----------GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 96 (330)
T ss_dssp CEEETTEEECTTS----------CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred CcCCCeEEEecCC----------CccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh
Confidence 3347888888844 4446776543 688899999999887775 68889999999999888655557888
Q ss_pred cccccccEeecCCccccccccccCCCCCCCcccCceeecCccCCC-CccCcccccCccCCceEEEcCCCCCCChhHHhhc
Q 042791 504 GKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGS-NTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERL 582 (761)
Q Consensus 504 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 582 (761)
..+++|++|++++|.+ ..+|..+. ++|+.|+++++.....+. .+..+++|+.|+++
T Consensus 97 ~~l~~L~~L~Ls~n~l-~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-------------------- 153 (330)
T 1xku_A 97 APLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELG-------------------- 153 (330)
T ss_dssp TTCTTCCEEECCSSCC-SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC--------------------
T ss_pred cCCCCCCEEECCCCcC-CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECC--------------------
Confidence 8899999999988854 45665543 567777766655433321 12344444444444
Q ss_pred cccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCC
Q 042791 583 QLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNC 662 (761)
Q Consensus 583 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 662 (761)
.|.+... ......+..+++|+.|+++++....+|..+. ++|++|++++|...
T Consensus 154 --------------~n~l~~~------------~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 154 --------------TNPLKSS------------GIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp --------------SSCCCGG------------GBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCC
T ss_pred --------------CCcCCcc------------CcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCC
Confidence 3332100 0001123345677788888877777776653 89999999999632
Q ss_pred CCCC-CCCCCCcceEEeccCcCceEeCccccCC-CcccccCCccceeeccccccccc---CCCCCccceEeeecCCCCcC
Q 042791 663 EHLP-PLGKLPLEKLVIDDLKSVKSVGNEFLGI-EENIIAFPKLKYLKIWATEELEE---TTDIPRLSSLTIWYCPKLKV 737 (761)
Q Consensus 663 ~~~~-~~~~lpl~~l~l~~l~~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~---~~~l~~L~~L~l~~~~~l~~ 737 (761)
...+ .++ .+.+++.|++++|.+..+ +..+..+++|++|++++|..... +..+++|++|++++|+.. .
T Consensus 206 ~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~-~ 277 (330)
T 1xku_A 206 KVDAASLK-------GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS-A 277 (330)
T ss_dssp EECTGGGT-------TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC-C
T ss_pred ccCHHHhc-------CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC-c
Confidence 2111 122 345677777888888874 44688999999999999977643 557899999999999754 3
Q ss_pred CCcc-cC------CCCCccEEEEecCCC
Q 042791 738 LPDY-LL------QTTALQELRIWGCPI 758 (761)
Q Consensus 738 l~~~-l~------~l~~L~~L~l~~c~~ 758 (761)
++.. +. ..+.|+.|++++||.
T Consensus 278 ~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 278 IGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cChhhcCCcccccccccccceEeecCcc
Confidence 4332 22 357899999999986
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=4.6e-19 Score=184.64 Aligned_cols=268 Identities=15% Similarity=0.074 Sum_probs=184.1
Q ss_pred EEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhc
Q 042791 379 LGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGK 458 (761)
Q Consensus 379 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~ 458 (761)
.+.+.+.+..+|..+. ++|+.|++++|.+. .++...+.++++|++|++++|.+.+ ..|..+..
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~~~ 98 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRIT------YISNSDLQRCVNLQALVLTSNGINT---------IEEDSFSS 98 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCCCE---------ECTTTTTT
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCcCc------ccCHHHhccCCCCCEEECCCCccCc---------cCHhhcCC
Confidence 5566677778887654 58899998888753 2333346788999999998766553 23456888
Q ss_pred ccccCccccCCcCCccCchh-hhccCCCcEEecCCccCcccccc--cccccccccEeecCCccccccc-cccCCCCCCCc
Q 042791 459 LIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCRNLRELPA--GIGKLMNMRTLLNGETYALKYM-PIGISKLTNLR 534 (761)
Q Consensus 459 l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~ 534 (761)
+++|++|++++|.++.+|.. +.++++|++|++++|. +..+|. .+..+++|++|++++|.....+ +..++.+++|+
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 89999999999998888866 7888999999999887 556665 6788999999999888544444 55688889999
Q ss_pred ccCceeecCccC-CCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccch
Q 042791 535 TLDRFVVGGGVD-GSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNE 613 (761)
Q Consensus 535 ~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 613 (761)
.|++++|..... +..+..+++|+.|+++++. + .. +....+..+++|+.|+++.|.+.......
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l------~~---~~~~~~~~~~~L~~L~L~~n~l~~~~~~~------ 241 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-H------IL---LLEIFVDVTSSVECLELRDTDLDTFHFSE------ 241 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSC-S------TT---HHHHHHHHTTTEEEEEEESCBCTTCCCC-------
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCc-c------cc---chhhhhhhcccccEEECCCCccccccccc------
Confidence 999888875544 5567778888888887542 1 11 22223445788899999888764432110
Q ss_pred hHHHHHhhCCCCCCCceEEEEeeCCC-----CCCchhhhhcCCcEEEeecCCCCCCCCC--CCCCCcceEEeccCcCceE
Q 042791 614 KDKQLLEALQPPLNVEELWIIFYGGN-----IFPKWLTLLTNLRNLTLASCVNCEHLPP--LGKLPLEKLVIDDLKSVKS 686 (761)
Q Consensus 614 ~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~~~~~~--~~~lpl~~l~l~~l~~L~~ 686 (761)
.........++.+++..+... .+|.++..+++|+.|++++|.. +.+|. ++. +.+++.|++
T Consensus 242 -----l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l-~~i~~~~~~~-------l~~L~~L~L 308 (353)
T 2z80_A 242 -----LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL-KSVPDGIFDR-------LTSLQKIWL 308 (353)
T ss_dssp ----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC-CCCCTTTTTT-------CTTCCEEEC
T ss_pred -----cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC-CccCHHHHhc-------CCCCCEEEe
Confidence 111223456777777776543 2567788888999999988853 34432 123 345666667
Q ss_pred eCccccC
Q 042791 687 VGNEFLG 693 (761)
Q Consensus 687 ~~~~~~~ 693 (761)
.+|.+..
T Consensus 309 ~~N~~~~ 315 (353)
T 2z80_A 309 HTNPWDC 315 (353)
T ss_dssp CSSCBCC
T ss_pred eCCCccC
Confidence 7776643
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=2.8e-18 Score=189.34 Aligned_cols=259 Identities=18% Similarity=0.149 Sum_probs=182.0
Q ss_pred ceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccccc
Q 042791 375 KVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPE 454 (761)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~ 454 (761)
.++.++++.+.+..+|..+. ++|+.|++++|.+.. ++. .+++|++|+|++|.++ .+|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~------lp~----~l~~L~~L~Ls~N~l~----------~lp~ 98 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS------LPA----LPPELRTLEVSGNQLT----------SLPV 98 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC------CCC----CCTTCCEEEECSCCCS----------CCCC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC------CCC----cCCCCCEEEcCCCcCC----------cCCC
Confidence 46788888888888887765 799999999987642 221 5789999999976554 5665
Q ss_pred chhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCc
Q 042791 455 NVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLR 534 (761)
Q Consensus 455 ~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 534 (761)
.+++|++|++++|.++.+|. .+.+|+.|++++|. +..+|.. +++|++|++++|.+ ..+|. .+.+|+
T Consensus 99 ---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l-~~l~~---~~~~L~ 164 (622)
T 3g06_A 99 ---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPA---LPSELC 164 (622)
T ss_dssp ---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCC-SCCCC---CCTTCC
T ss_pred ---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcC-CCcCC---ccCCCC
Confidence 57889999999999998887 67889999999987 5567764 48899999999854 44554 346788
Q ss_pred ccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchh
Q 042791 535 TLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEK 614 (761)
Q Consensus 535 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 614 (761)
.|++++|.....+ ..+++|+.|+++++ .+..++. ...+|+.|.++.|.+....
T Consensus 165 ~L~L~~N~l~~l~---~~~~~L~~L~Ls~N-~l~~l~~-------------~~~~L~~L~L~~N~l~~l~---------- 217 (622)
T 3g06_A 165 KLWAYNNQLTSLP---MLPSGLQELSVSDN-QLASLPT-------------LPSELYKLWAYNNRLTSLP---------- 217 (622)
T ss_dssp EEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-------------CCTTCCEEECCSSCCSSCC----------
T ss_pred EEECCCCCCCCCc---ccCCCCcEEECCCC-CCCCCCC-------------ccchhhEEECcCCcccccC----------
Confidence 8888877766655 44577888888754 2332221 1256777777666543210
Q ss_pred HHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccCC
Q 042791 615 DKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLGI 694 (761)
Q Consensus 615 ~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~~ 694 (761)
..+++|+.|++++|.+..+| ..+++|+.|++++|. ++.+|. .+.+++.|++.+|.++.+
T Consensus 218 --------~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~-L~~lp~---------~~~~L~~L~Ls~N~L~~l 276 (622)
T 3g06_A 218 --------ALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNR-LTSLPM---------LPSGLLSLSVYRNQLTRL 276 (622)
T ss_dssp --------CCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC---------CCTTCCEEECCSSCCCSC
T ss_pred --------CCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCC-CCcCCc---------ccccCcEEeCCCCCCCcC
Confidence 12357888888888777766 345778888888874 333332 234566667777777777
Q ss_pred CcccccCCccceeeccccccccc
Q 042791 695 EENIIAFPKLKYLKIWATEELEE 717 (761)
Q Consensus 695 ~~~~~~~~~L~~L~l~~~~~~~~ 717 (761)
|..+.++++|+.|++++|.....
T Consensus 277 p~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 277 PESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CGGGGGSCTTCEEECCSCCCCHH
T ss_pred CHHHhhccccCEEEecCCCCCCc
Confidence 77777888888888888766543
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=2.7e-21 Score=210.02 Aligned_cols=336 Identities=17% Similarity=0.059 Sum_probs=218.1
Q ss_pred CCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCcc-
Q 042791 396 FDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIER- 474 (761)
Q Consensus 396 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~- 474 (761)
.++|+.|+++++.+. ......++..+++|++|++++|.+.. .....++..+..+++|++|++++|.+..
T Consensus 2 ~~~l~~L~Ls~~~l~-----~~~~~~~~~~~~~L~~L~L~~~~l~~-----~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 71 (461)
T 1z7x_W 2 SLDIQSLDIQCEELS-----DARWAELLPLLQQCQVVRLDDCGLTE-----ARCKDISSALRVNPALAELNLRSNELGDV 71 (461)
T ss_dssp CEEEEEEEEESCCCC-----HHHHHHHHHHHTTCSEEEEESSCCCH-----HHHHHHHHHHHTCTTCCEEECTTCCCHHH
T ss_pred CccceehhhhhcccC-----chhHHHHHhhcCCccEEEccCCCCCH-----HHHHHHHHHHHhCCCcCEEeCCCCcCChH
Confidence 357899999988752 33345567899999999999887652 3344577778889999999999999874
Q ss_pred Cchhh-hccC----CCcEEecCCccCcc----cccccccccccccEeecCCcccccccccc-----CCCCCCCcccCcee
Q 042791 475 LPETL-CELY----NLQKLDIRRCRNLR----ELPAGIGKLMNMRTLLNGETYALKYMPIG-----ISKLTNLRTLDRFV 540 (761)
Q Consensus 475 lp~~~-~~l~----~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-----l~~l~~L~~L~l~~ 540 (761)
.+..+ ..+. +|++|++++|.... .+|..+..+++|++|++++|.+....+.. ....++|+.|++++
T Consensus 72 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 151 (461)
T 1z7x_W 72 GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY 151 (461)
T ss_dssp HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCC
Confidence 23333 4455 79999999998553 56888899999999999999765433322 23356899999988
Q ss_pred ecCccC-----CCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchhH
Q 042791 541 VGGGVD-----GSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKD 615 (761)
Q Consensus 541 ~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 615 (761)
|..... +..+..+++|+.|+++++. +... ....+........++|+.|+++.+.+.. ...
T Consensus 152 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~----~~~~l~~~l~~~~~~L~~L~L~~n~l~~----------~~~ 216 (461)
T 1z7x_W 152 CSLSAASCEPLASVLRAKPDFKELTVSNND-INEA----GVRVLCQGLKDSPCQLEALKLESCGVTS----------DNC 216 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHH----HHHHHHHHHHHSCCCCCEEECTTSCCBT----------THH
T ss_pred CCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchH----HHHHHHHHHhcCCCCceEEEccCCCCcH----------HHH
Confidence 764432 2233456788888888643 2210 0111111111134588999988776432 123
Q ss_pred HHHHhhCCCCCCCceEEEEeeCCCCC------CchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCc
Q 042791 616 KQLLEALQPPLNVEELWIIFYGGNIF------PKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGN 689 (761)
Q Consensus 616 ~~~~~~l~~~~~L~~L~l~~~~~~~~------p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~ 689 (761)
..+...+..+++|+.|++++|..... +.....+++|++|++++|.. +... ...++-..-.+.+++.|++++|
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l-~~~~-~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-TAKG-CGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-CHHH-HHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC-CHHH-HHHHHHHHhhCCCcceEECCCC
Confidence 34455556678899999998875432 22223578999999999852 2100 0001100112345666777777
Q ss_pred cccCC-Cccc-----ccCCccceeeccccccccc--------CCCCCccceEeeecCCCCcCCCcc----cC-CCCCccE
Q 042791 690 EFLGI-EENI-----IAFPKLKYLKIWATEELEE--------TTDIPRLSSLTIWYCPKLKVLPDY----LL-QTTALQE 750 (761)
Q Consensus 690 ~~~~~-~~~~-----~~~~~L~~L~l~~~~~~~~--------~~~l~~L~~L~l~~~~~l~~l~~~----l~-~l~~L~~ 750 (761)
.+... +..+ ...++|++|++++|..... +..+++|++|++++|......+.. +. ..++|++
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE
Confidence 76531 1111 1347999999999986543 345799999999999654322222 22 2689999
Q ss_pred EEEecCCC
Q 042791 751 LRIWGCPI 758 (761)
Q Consensus 751 L~l~~c~~ 758 (761)
|++++|..
T Consensus 375 L~L~~n~i 382 (461)
T 1z7x_W 375 LWLADCDV 382 (461)
T ss_dssp EECTTSCC
T ss_pred EECCCCCC
Confidence 99999964
No 63
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=3.5e-20 Score=208.12 Aligned_cols=326 Identities=15% Similarity=0.094 Sum_probs=199.5
Q ss_pred CCCceeEEEEcccCCCCCCCchhhHHHHhccCCc-ceEEeeccccccCCccccccccccccchhcccccCccccCCcCCc
Q 042791 395 EFDRLRSLLIYDRSYSNGSLNGSILQELFSKLAC-LRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIE 473 (761)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~ 473 (761)
.+++|+.|+|+++.+ .+..+..+...++. |++|++++|.... ...++.....+++|++|++++|.++
T Consensus 110 ~~~~L~~L~L~~~~i-----~~~~~~~l~~~~~~~L~~L~L~~~~~~~-------~~~l~~~~~~~~~L~~L~L~~~~~~ 177 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIV-----SDLDLDRLAKARADDLETLKLDKCSGFT-------TDGLLSIVTHCRKIKTLLMEESSFS 177 (592)
T ss_dssp HCTTCCEEEEESCBC-----CHHHHHHHHHHHGGGCCEEEEESCEEEE-------HHHHHHHHHHCTTCSEEECTTCEEE
T ss_pred hCCCCCeEEeeccEe-----cHHHHHHHHHhccccCcEEECcCCCCcC-------HHHHHHHHhhCCCCCEEECcccccc
Confidence 788999999998764 33334433333555 9999998764111 1123444457899999999999875
Q ss_pred c-----CchhhhccCCCcEEecCCccCc----ccccccccccccccEeecCCccccccccccCCCCCCCcccCceeecCc
Q 042791 474 R-----LPETLCELYNLQKLDIRRCRNL----RELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGG 544 (761)
Q Consensus 474 ~-----lp~~~~~l~~L~~L~l~~~~~~----~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 544 (761)
. ++..+..+++|++|++++|... ..++..+..+++|++|++++|.. ..+|..+..+++|+.|++......
T Consensus 178 ~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~ 256 (592)
T 3ogk_B 178 EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNED 256 (592)
T ss_dssp CCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCC
T ss_pred CcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccc
Confidence 2 4455678899999999998854 35666667899999999999854 447777888999999988653211
Q ss_pred ----cCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHh
Q 042791 545 ----VDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLE 620 (761)
Q Consensus 545 ----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~ 620 (761)
.....+..+++|+.|.+++. . ...++ ..+..+++|+.|+++++.+ .......
T Consensus 257 ~~~~~~~~~l~~~~~L~~L~l~~~-~------~~~l~----~~~~~~~~L~~L~Ls~~~l-------------~~~~~~~ 312 (592)
T 3ogk_B 257 IGMPEKYMNLVFPRKLCRLGLSYM-G------PNEMP----ILFPFAAQIRKLDLLYALL-------------ETEDHCT 312 (592)
T ss_dssp TTCTTSSSCCCCCTTCCEEEETTC-C------TTTGG----GGGGGGGGCCEEEETTCCC-------------CHHHHHH
T ss_pred cchHHHHHHhhccccccccCcccc-c------hhHHH----HHHhhcCCCcEEecCCCcC-------------CHHHHHH
Confidence 22233455666766665531 0 01111 1244567777777766552 1222223
Q ss_pred hCCCCCCCceEEEEeeCC-CCCCchhhhhcCCcEEEeec----------CCCCCCC--CC-CCCCC-cceEEe-------
Q 042791 621 ALQPPLNVEELWIIFYGG-NIFPKWLTLLTNLRNLTLAS----------CVNCEHL--PP-LGKLP-LEKLVI------- 678 (761)
Q Consensus 621 ~l~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~L~l~~----------~~~~~~~--~~-~~~lp-l~~l~l------- 678 (761)
.+..+++|+.|++.++.. ..++.....+++|++|++++ |..++.. +. ...+| ++.+.+
T Consensus 313 ~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 313 LIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp HHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred HHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence 344555666666653211 11222334555666666663 3332210 00 01122 333332
Q ss_pred ----------ccCcCceEe----CccccCCC------cccccCCccceeecccccc-ccc------CCCCCccceEeeec
Q 042791 679 ----------DDLKSVKSV----GNEFLGIE------ENIIAFPKLKYLKIWATEE-LEE------TTDIPRLSSLTIWY 731 (761)
Q Consensus 679 ----------~~l~~L~~~----~~~~~~~~------~~~~~~~~L~~L~l~~~~~-~~~------~~~l~~L~~L~l~~ 731 (761)
.+++.|++. .|.++..| ..+.++++|++|++++|.. ... ...+|+|++|++++
T Consensus 393 ~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY 472 (592)
T ss_dssp HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS
T ss_pred HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC
Confidence 235556664 45565433 2255799999999987553 111 23589999999999
Q ss_pred CCCCc-CCCcccCCCCCccEEEEecCC
Q 042791 732 CPKLK-VLPDYLLQTTALQELRIWGCP 757 (761)
Q Consensus 732 ~~~l~-~l~~~l~~l~~L~~L~l~~c~ 757 (761)
|.... .++..+..+++|+.|+|++|+
T Consensus 473 n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 473 VGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp CCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 97554 345556789999999999998
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=9.1e-20 Score=186.52 Aligned_cols=197 Identities=14% Similarity=0.045 Sum_probs=91.4
Q ss_pred HHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccc
Q 042791 420 QELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLREL 499 (761)
Q Consensus 420 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l 499 (761)
..++..+++|+.|++++|.+.. ..|..+..+++|++|++++|.++..++ +..+++|++|++++|. +..+
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l 95 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQ---------ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQEL 95 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCC---------CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEE
T ss_pred HHHhccCCCCCEEECcCCccCc---------CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cccc
Confidence 3344444555555555444332 122344555555555555555543333 4555555555555554 2222
Q ss_pred cccccccccccEeecCCccccccccccCCCCCCCcccCceeecCccCC-CCccCcccccCccCCceEEEcCCCCCCChhH
Q 042791 500 PAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDG-SNTCRLESLKNLQLRGKCSIEGLSNVSHVDE 578 (761)
Q Consensus 500 p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 578 (761)
| .+++|++|++++|.+....+. .+++|+.|++++|.....+ ..+..+++|+.|+++++. +...
T Consensus 96 ~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~-------- 159 (317)
T 3o53_A 96 L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTV-------- 159 (317)
T ss_dssp E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEE--------
T ss_pred c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcc--------
Confidence 2 224555555555533322221 2344555555444433322 123344555555555321 1100
Q ss_pred Hhhccc-cccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEee
Q 042791 579 AERLQL-YNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLA 657 (761)
Q Consensus 579 l~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~ 657 (761)
....+ ..+++|+.|+++.|.+... .....+++|+.|++++|....+|..+..+++|+.|+++
T Consensus 160 -~~~~~~~~l~~L~~L~L~~N~l~~~----------------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 160 -NFAELAASSDTLEHLNLQYNFIYDV----------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222 (317)
T ss_dssp -EGGGGGGGTTTCCEEECTTSCCCEE----------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT
T ss_pred -cHHHHhhccCcCCEEECCCCcCccc----------------ccccccccCCEEECCCCcCCcchhhhcccCcccEEECc
Confidence 00011 2344555555554443110 11112456677777777666666666677777777777
Q ss_pred cCC
Q 042791 658 SCV 660 (761)
Q Consensus 658 ~~~ 660 (761)
+|.
T Consensus 223 ~N~ 225 (317)
T 3o53_A 223 NNK 225 (317)
T ss_dssp TSC
T ss_pred CCc
Confidence 764
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=3.6e-20 Score=208.19 Aligned_cols=370 Identities=14% Similarity=0.086 Sum_probs=203.4
Q ss_pred CceEEEEEeecCCCCC-ccccc-CCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccc
Q 042791 374 VKVRHLGLNFQRGASF-PMSFF-EFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKE 451 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 451 (761)
..++.++++.+.+... +..+. .+++|+.|++.+|. .+....++.++.++++|++|++++|.+++ .....
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~~~i~~-----~~~~~ 175 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE----GFSTDGLAAIAATCRNLKELDLRESDVDD-----VSGHW 175 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE----EEEHHHHHHHHHHCTTCCEEECTTCEEEC-----CCGGG
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC----CCCHHHHHHHHHhCCCCCEEeCcCCccCC-----cchHH
Confidence 4677788887765422 22343 68999999999874 12233455666789999999999988653 22223
Q ss_pred cccchhcccccCccccCCcC--Cc--cCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccc------cc
Q 042791 452 IPENVGKLIHLKYLNLSELG--IE--RLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYA------LK 521 (761)
Q Consensus 452 lp~~~~~l~~L~~L~l~~~~--i~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~------~~ 521 (761)
++.....+++|++|++++|. +. .++..+.++++|++|++++|.....+|..+..+++|++|+++.+.. ..
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 44434567899999999986 32 3344456689999999999966777888888999999998766531 12
Q ss_pred cccccCCCCCCCccc-CceeecCccCCCCccCcccccCccCCceEEEcCCC--C-CCChhHHhhc-------------cc
Q 042791 522 YMPIGISKLTNLRTL-DRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLS--N-VSHVDEAERL-------------QL 584 (761)
Q Consensus 522 ~~p~~l~~l~~L~~L-~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~-~~~~~~l~~~-------------~l 584 (761)
.++..+.++++|+.| .+........+.....+++|+.|++++|. +.... . +...+++..+ ..
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~ 334 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHH
Confidence 233345555666655 22222222222222345556666665543 21100 0 0000000000 11
Q ss_pred cccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCC-Cchh-hhhcCCcEEEee-----
Q 042791 585 YNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIF-PKWL-TLLTNLRNLTLA----- 657 (761)
Q Consensus 585 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~-~~l~~L~~L~l~----- 657 (761)
..|++|+.|++......+ ..................+++|+.|.+..+..+.. +..+ ..+++|+.|+++
T Consensus 335 ~~~~~L~~L~L~~~~~~g----~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~ 410 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFV----MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK 410 (594)
T ss_dssp HHCTTCCEEEEECSCTTC----SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTT
T ss_pred HhCCCCCEEEEecCcccc----cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCC
Confidence 235566666653211000 00000111122222222356778876655544321 1223 357888888888
Q ss_pred cCCCCCCCCCCCCCCcceEEeccCcCceEeCccccC-CCcccc-cCCccceeeccccccccc-----CCCCCccceEeee
Q 042791 658 SCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLG-IEENII-AFPKLKYLKIWATEELEE-----TTDIPRLSSLTIW 730 (761)
Q Consensus 658 ~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~-----~~~l~~L~~L~l~ 730 (761)
+|..++..|.-..++--.-.+.+++.|++.+ .++. .+..+. .+++|++|++++|..... ...+|+|++|+++
T Consensus 411 ~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489 (594)
T ss_dssp CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEE
T ss_pred CcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECc
Confidence 4554443332111110011223444555543 3332 111222 378899999988875433 2458899999999
Q ss_pred cCCCCcC-CCcccCCCCCccEEEEecCCC
Q 042791 731 YCPKLKV-LPDYLLQTTALQELRIWGCPI 758 (761)
Q Consensus 731 ~~~~l~~-l~~~l~~l~~L~~L~l~~c~~ 758 (761)
+|+.... +...+..+++|+.|++++|+.
T Consensus 490 ~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 490 DCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp SCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 9986332 222344578899999999875
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=2.1e-18 Score=186.01 Aligned_cols=242 Identities=19% Similarity=0.144 Sum_probs=157.5
Q ss_pred EEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccch
Q 042791 377 RHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENV 456 (761)
Q Consensus 377 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~ 456 (761)
..+.........+|..+. ++++.|+|++|.+. .+++..|.++++|++|+|++|.+.+ ..|..+
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~---------~~~~~~ 119 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQ------MIQADTFRHLHHLEVLQLGRNSIRQ---------IEVGAF 119 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCE---------ECTTTT
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCc------eECHHHcCCCCCCCEEECCCCccCC---------cChhhc
Confidence 345555556666776553 57788888777652 2223346777888888888665543 234567
Q ss_pred hcccccCccccCCcCCccCchh-hhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccc-cCCCCCCCc
Q 042791 457 GKLIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPI-GISKLTNLR 534 (761)
Q Consensus 457 ~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~ 534 (761)
..+++|++|++++|.++.+|.. +..+++|++|+|++|......+..+..+++|++|++++|..+..++. .+..+++|+
T Consensus 120 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199 (452)
T ss_dssp TTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred cCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence 7778888888888887777654 67778888888888774333334567788888888887666666665 367777888
Q ss_pred ccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchh
Q 042791 535 TLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEK 614 (761)
Q Consensus 535 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 614 (761)
.|++++|.....+ .+..+++|+.|+++++. +. .+....+.++++|+.|+++.|.+....
T Consensus 200 ~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~-l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~---------- 258 (452)
T 3zyi_A 200 YLNLGMCNIKDMP-NLTPLVGLEELEMSGNH-FP---------EIRPGSFHGLSSLKKLWVMNSQVSLIE---------- 258 (452)
T ss_dssp EEECTTSCCSSCC-CCTTCTTCCEEECTTSC-CS---------EECGGGGTTCTTCCEEECTTSCCCEEC----------
T ss_pred EEECCCCcccccc-cccccccccEEECcCCc-Cc---------ccCcccccCccCCCEEEeCCCcCceEC----------
Confidence 8887777766554 35567777777777532 11 111224556677777777766542210
Q ss_pred HHHHHhhCCCCCCCceEEEEeeCCCCCCc-hhhhhcCCcEEEeecCC
Q 042791 615 DKQLLEALQPPLNVEELWIIFYGGNIFPK-WLTLLTNLRNLTLASCV 660 (761)
Q Consensus 615 ~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~ 660 (761)
...+..+++|+.|++++|.+..+|. .+..+++|+.|+|++|.
T Consensus 259 ----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 259 ----RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ----TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ----HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 1234556778888888887766653 45677888888888775
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=185.53 Aligned_cols=241 Identities=19% Similarity=0.176 Sum_probs=148.5
Q ss_pred EEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchh
Q 042791 378 HLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVG 457 (761)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~ 457 (761)
.+......+..+|..+. ++++.|+|++|.+. .+++..|.++++|++|+|++|.+.. ..+..|.
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~---------i~~~~~~ 109 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQ------IIKVNSFKHLRHLEILQLSRNHIRT---------IEIGAFN 109 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCCCC------EECTTTTSSCSSCCEEECCSSCCCE---------ECGGGGT
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCC------eeCHHHhhCCCCCCEEECCCCcCCc---------cChhhcc
Confidence 45555556666666553 56777777776642 2222336677777777777655443 2234566
Q ss_pred cccccCccccCCcCCccCch-hhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccc-cCCCCCCCcc
Q 042791 458 KLIHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPI-GISKLTNLRT 535 (761)
Q Consensus 458 ~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~ 535 (761)
.+++|++|++++|.++.+|. .+..+++|++|++++|......+..+..+++|++|++++|.....++. .+..+++|+.
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 77777777777777776664 467777777777777763333333567777777777777666665554 3667777777
Q ss_pred cCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchhH
Q 042791 536 LDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKD 615 (761)
Q Consensus 536 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 615 (761)
|++++|.....+. +..+++|+.|+++++ .+..+ ....+..+++|+.|+++.|.+....
T Consensus 190 L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N-~l~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~----------- 247 (440)
T 3zyj_A 190 LNLAMCNLREIPN-LTPLIKLDELDLSGN-HLSAI---------RPGSFQGLMHLQKLWMIQSQIQVIE----------- 247 (440)
T ss_dssp EECTTSCCSSCCC-CTTCSSCCEEECTTS-CCCEE---------CTTTTTTCTTCCEEECTTCCCCEEC-----------
T ss_pred ecCCCCcCccccc-cCCCcccCEEECCCC-ccCcc---------ChhhhccCccCCEEECCCCceeEEC-----------
Confidence 7777776555543 556667777777654 22211 1123455666777776666542211
Q ss_pred HHHHhhCCCCCCCceEEEEeeCCCCCCc-hhhhhcCCcEEEeecCC
Q 042791 616 KQLLEALQPPLNVEELWIIFYGGNIFPK-WLTLLTNLRNLTLASCV 660 (761)
Q Consensus 616 ~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~ 660 (761)
...+..+++|+.|++++|....+|. .+..+++|+.|+|++|.
T Consensus 248 ---~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 248 ---RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ---TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ---hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 1234456777888887777766643 45677888888887775
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=2.6e-18 Score=175.31 Aligned_cols=105 Identities=13% Similarity=0.042 Sum_probs=58.2
Q ss_pred CCCCCceEEEEeeCCCCCCc----hhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccCCCcccc
Q 042791 624 PPLNVEELWIIFYGGNIFPK----WLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLGIEENII 699 (761)
Q Consensus 624 ~~~~L~~L~l~~~~~~~~p~----~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~~~~~~~ 699 (761)
.+++|+.|++++|.+..++. .+..+++|+.|++++|......|. -....+.+++.|++++|.++.+|..+.
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~~l~~L~~L~Ls~N~l~~ip~~~~ 273 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA-----PSCDWPSQLNSLNLSFTGLKQVPKGLP 273 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC-----SCCCCCTTCCEEECTTSCCSSCCSSCC
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch-----hhhhhcCCCCEEECCCCccChhhhhcc
Confidence 34455555555555443221 223556777777777653222210 001123455666666677766665443
Q ss_pred cCCccceeeccccccccc--CCCCCccceEeeecCCCC
Q 042791 700 AFPKLKYLKIWATEELEE--TTDIPRLSSLTIWYCPKL 735 (761)
Q Consensus 700 ~~~~L~~L~l~~~~~~~~--~~~l~~L~~L~l~~~~~l 735 (761)
++|++|++++|..... +..+++|++|++++|+..
T Consensus 274 --~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp --SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTT
T ss_pred --CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCC
Confidence 7777888877765443 456777888888877643
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=3.3e-17 Score=165.01 Aligned_cols=219 Identities=18% Similarity=0.121 Sum_probs=143.7
Q ss_pred EEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccch
Q 042791 377 RHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENV 456 (761)
Q Consensus 377 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~ 456 (761)
+.++.....+..+|..+ .++|+.|+++++.+. .+++..+..+++|++|++++|.+.+ ..|..+
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~------~~~~~~~~~~~~L~~L~l~~n~l~~---------~~~~~~ 76 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRIS------HVPAASFRACRNLTILWLHSNVLAR---------IDAAAF 76 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCE---------ECTTTT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCC------ccCHHHcccCCCCCEEECCCCccce---------eCHhhc
Confidence 45566666677777554 467888888887752 2333446778888888888665543 235667
Q ss_pred hcccccCccccCCcC-CccC-chhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCc
Q 042791 457 GKLIHLKYLNLSELG-IERL-PETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLR 534 (761)
Q Consensus 457 ~~l~~L~~L~l~~~~-i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 534 (761)
..+++|++|++++|. ++.+ |..+..+++|++|++++|......|..+..+++|++|++++|.+....+..++.+++|+
T Consensus 77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156 (285)
T ss_dssp TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence 788888888888886 7766 56778888888888888875555566678888888888888865544444577777788
Q ss_pred ccCceeecCccCCC-CccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccch
Q 042791 535 TLDRFVVGGGVDGS-NTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNE 613 (761)
Q Consensus 535 ~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 613 (761)
.|++++|.....+. .+..+++|+.|+++++ .+...
T Consensus 157 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----------------------------------~l~~~---------- 192 (285)
T 1ozn_A 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQN----------------------------------RVAHV---------- 192 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSS----------------------------------CCCEE----------
T ss_pred EEECCCCcccccCHHHhcCccccCEEECCCC----------------------------------ccccc----------
Confidence 77777666544433 2444555555555542 21100
Q ss_pred hHHHHHhhCCCCCCCceEEEEeeCCCCCC-chhhhhcCCcEEEeecCC
Q 042791 614 KDKQLLEALQPPLNVEELWIIFYGGNIFP-KWLTLLTNLRNLTLASCV 660 (761)
Q Consensus 614 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~ 660 (761)
.+..+..+++|+.|+++++....+| ..+..+++|+.|++++|.
T Consensus 193 ----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 193 ----HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ----CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ----CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 0112233456666666666665555 346777888888888775
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=1.5e-17 Score=169.50 Aligned_cols=178 Identities=20% Similarity=0.173 Sum_probs=145.2
Q ss_pred CCceEEEEEeecCCCCCccc-ccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPMS-FFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKE 451 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 451 (761)
...++.+.++.+.+..+|.. +..+++|+.|++++|.+.. .+..+.. +..+++|++|++++|.+ ..
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~-~~~~~~L~~L~Ls~n~i----------~~ 92 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF---KGCCSQS-DFGTTSLKYLDLSFNGV----------IT 92 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE---EEEEEHH-HHSCSCCCEEECCSCSE----------EE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc---ccCcccc-cccccccCEEECCCCcc----------cc
Confidence 45899999999999999875 6899999999999987632 1111233 45799999999996654 46
Q ss_pred cccchhcccccCccccCCcCCccCch--hhhccCCCcEEecCCccCcccccccccccccccEeecCCccccc-cccccCC
Q 042791 452 IPENVGKLIHLKYLNLSELGIERLPE--TLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALK-YMPIGIS 528 (761)
Q Consensus 452 lp~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~p~~l~ 528 (761)
+|..+..+++|++|++++|.++.++. .+..+++|++|++++|......|..+..+++|++|++++|.... .+|..+.
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 172 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh
Confidence 78788899999999999999998774 78999999999999999776777778999999999999997765 5788899
Q ss_pred CCCCCcccCceeecCccC-CCCccCcccccCccCCce
Q 042791 529 KLTNLRTLDRFVVGGGVD-GSNTCRLESLKNLQLRGK 564 (761)
Q Consensus 529 ~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~ 564 (761)
.+++|+.|++++|..... +..+..+++|+.|+++++
T Consensus 173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209 (306)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC
Confidence 999999999988875554 445666777777777753
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=2.3e-18 Score=186.43 Aligned_cols=231 Identities=14% Similarity=0.055 Sum_probs=111.3
Q ss_pred CcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCccccccccccc
Q 042791 427 ACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKL 506 (761)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 506 (761)
++|+.|+|++|.+.+ ..|..++.+++|++|++++|.++..++ +..+++|++|+|++|. +..+|. .
T Consensus 34 ~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~ 98 (487)
T 3oja_A 34 WNVKELDLSGNPLSQ---------ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----G 98 (487)
T ss_dssp GGCCEEECCSSCCCC---------CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----C
T ss_pred CCccEEEeeCCcCCC---------CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----C
Confidence 366666666554443 233455666666666666666654443 5666666666666665 333332 2
Q ss_pred ccccEeecCCccccccccccCCCCCCCcccCceeecCccC-CCCccCcccccCccCCceEEEcCCCCCCChhHHhhcccc
Q 042791 507 MNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVD-GSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLY 585 (761)
Q Consensus 507 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~ 585 (761)
++|++|++++|.+....+. .+++|+.|++++|..... +..+..+++|+.|+++++. +... ....+.
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~---------~~~~l~ 165 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTV---------NFAELA 165 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEE---------EGGGGG
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCc---------ChHHHh
Confidence 5666666666644333221 234455555544443322 1123334444444444320 0000 000000
Q ss_pred ccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCC
Q 042791 586 NKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHL 665 (761)
Q Consensus 586 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~ 665 (761)
..+++|+.|++++|.+..+|. ...+++|+.|+|++|...
T Consensus 166 -------------------------------------~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~--- 204 (487)
T 3oja_A 166 -------------------------------------ASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLA--- 204 (487)
T ss_dssp -------------------------------------GGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCC---
T ss_pred -------------------------------------hhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCC---
Confidence 012334444444444333322 223566777777766421
Q ss_pred CCCCCCCcceEEeccCcCceEeCccccCCCcccccCCccceeeccccccc-----ccCCCCCccceEeee
Q 042791 666 PPLGKLPLEKLVIDDLKSVKSVGNEFLGIEENIIAFPKLKYLKIWATEEL-----EETTDIPRLSSLTIW 730 (761)
Q Consensus 666 ~~~~~lpl~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~l~~L~~L~l~ 730 (761)
.+|-....+.+++.|++++|.++++|..+..+++|+.|++++|... ..+..+++|+.|+++
T Consensus 205 ----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 205 ----FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ----EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ----CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 2221112334555566666666666665666666666666666554 114455666666654
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=5.2e-17 Score=163.56 Aligned_cols=94 Identities=18% Similarity=0.144 Sum_probs=58.8
Q ss_pred cccccccccchhcccccCccccCCcCCccCc-hhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccc-
Q 042791 446 ANRIKEIPENVGKLIHLKYLNLSELGIERLP-ETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYM- 523 (761)
Q Consensus 446 ~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~- 523 (761)
...++.+|..+ .++|++|++++|.++.+| ..+..+++|++|++++|......|..+..+++|++|++++|.....+
T Consensus 20 ~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~ 97 (285)
T 1ozn_A 20 QQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97 (285)
T ss_dssp SSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred cCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC
Confidence 33444566543 457777777777777665 35677777777777777644444666777777777777777533333
Q ss_pred cccCCCCCCCcccCceee
Q 042791 524 PIGISKLTNLRTLDRFVV 541 (761)
Q Consensus 524 p~~l~~l~~L~~L~l~~~ 541 (761)
|..+..+++|+.|+++++
T Consensus 98 ~~~~~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRC 115 (285)
T ss_dssp TTTTTTCTTCCEEECTTS
T ss_pred HHHhcCCcCCCEEECCCC
Confidence 444555555555554433
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=3.9e-18 Score=173.96 Aligned_cols=107 Identities=17% Similarity=0.107 Sum_probs=70.5
Q ss_pred hhhcCCcEEEeecCCCCCCCCCCCCCC-cceEEeccCcCceEeCccccCCC--cccccCCccceeecccccccccCCCC-
Q 042791 646 TLLTNLRNLTLASCVNCEHLPPLGKLP-LEKLVIDDLKSVKSVGNEFLGIE--ENIIAFPKLKYLKIWATEELEETTDI- 721 (761)
Q Consensus 646 ~~l~~L~~L~l~~~~~~~~~~~~~~lp-l~~l~l~~l~~L~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~l- 721 (761)
..+++|++|++++|.. +.++ .++ .-...+.+++.|++++|.+.+.+ ..+..+++|++|++++|........+
T Consensus 198 ~~l~~L~~L~L~~N~l-~~~~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~ 273 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGM-ETPS---GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP 273 (312)
T ss_dssp TSCTTCCEEECTTSCC-CCHH---HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC
T ss_pred ccCCCCCEEECCCCcC-cchH---HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc
Confidence 5678888888888852 1110 111 00012346777777788887733 34556788888888888766442222
Q ss_pred CccceEeeecCCCCcCCCcccCCCCCccEEEEecCCC
Q 042791 722 PRLSSLTIWYCPKLKVLPDYLLQTTALQELRIWGCPI 758 (761)
Q Consensus 722 ~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~ 758 (761)
++|++|++++|+ ++.+|. +..+++|++|++++|+.
T Consensus 274 ~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 274 AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCTT
T ss_pred CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCCC
Confidence 588888888885 444565 77888888888888875
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=3.6e-18 Score=174.62 Aligned_cols=216 Identities=13% Similarity=0.044 Sum_probs=137.7
Q ss_pred cCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCc
Q 042791 394 FEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIE 473 (761)
Q Consensus 394 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~ 473 (761)
..+++|+.|++++|.+. .+++..+..+++|++|++++|.+.+ ++. +..+++|++|++++|.++
T Consensus 31 ~~~~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~----------~~~-~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLS------QISAADLAPFTKLELLNLSSNVLYE----------TLD-LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp TTGGGCSEEECTTSCCC------CCCHHHHTTCTTCCEEECTTSCCEE----------EEE-ETTCTTCCEEECCSSEEE
T ss_pred ccCCCCCEEECcCCccC------cCCHHHhhCCCcCCEEECCCCcCCc----------chh-hhhcCCCCEEECcCCccc
Confidence 44567777777776652 2233446777777777777655542 222 666777777777777776
Q ss_pred cCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcccCceeecCccCC-CCc-c
Q 042791 474 RLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDG-SNT-C 551 (761)
Q Consensus 474 ~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~-~~~-~ 551 (761)
.+| ..++|++|++++|.. ..++. ..+++|++|++++|.+....+..++.+++|+.|++++|.....+ ..+ .
T Consensus 94 ~l~----~~~~L~~L~l~~n~l-~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 166 (317)
T 3o53_A 94 ELL----VGPSIETLHAANNNI-SRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (317)
T ss_dssp EEE----ECTTCCEEECCSSCC-SEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred ccc----CCCCcCEEECCCCcc-CCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh
Confidence 555 336777777777763 33332 23567777777777665555556666777777777766644332 222 3
Q ss_pred CcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceE
Q 042791 552 RLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEEL 631 (761)
Q Consensus 552 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 631 (761)
.+++|+.|+++++. +..++ ....+++|+.|+++.|.+... +..+..+++|+.|
T Consensus 167 ~l~~L~~L~L~~N~-l~~~~-----------~~~~l~~L~~L~Ls~N~l~~l---------------~~~~~~l~~L~~L 219 (317)
T 3o53_A 167 SSDTLEHLNLQYNF-IYDVK-----------GQVVFAKLKTLDLSSNKLAFM---------------GPEFQSAAGVTWI 219 (317)
T ss_dssp GTTTCCEEECTTSC-CCEEE-----------CCCCCTTCCEEECCSSCCCEE---------------CGGGGGGTTCSEE
T ss_pred ccCcCCEEECCCCc-Ccccc-----------cccccccCCEEECCCCcCCcc---------------hhhhcccCcccEE
Confidence 46677777777542 22211 122356777777777764211 1224456789999
Q ss_pred EEEeeCCCCCCchhhhhcCCcEEEeecCC
Q 042791 632 WIIFYGGNIFPKWLTLLTNLRNLTLASCV 660 (761)
Q Consensus 632 ~l~~~~~~~~p~~~~~l~~L~~L~l~~~~ 660 (761)
++++|.+..+|..+..+++|+.|++++|.
T Consensus 220 ~L~~N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp ECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred ECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence 99999988889888889999999999885
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=5.4e-18 Score=183.54 Aligned_cols=235 Identities=11% Similarity=0.030 Sum_probs=140.7
Q ss_pred CCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccC
Q 042791 396 FDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERL 475 (761)
Q Consensus 396 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~l 475 (761)
+++|+.|+|++|.+.. +++..|..+++|++|+|++|.+++ .++ +..+++|++|++++|.++.+
T Consensus 33 ~~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~----------~~~-l~~l~~L~~L~Ls~N~l~~l 95 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQ------ISAADLAPFTKLELLNLSSNVLYE----------TLD-LESLSTLRTLDLNNNYVQEL 95 (487)
T ss_dssp GGGCCEEECCSSCCCC------CCGGGGTTCTTCCEEECTTSCCEE----------EEE-CTTCTTCCEEECCSSEEEEE
T ss_pred CCCccEEEeeCCcCCC------CCHHHHhCCCCCCEEEeeCCCCCC----------Ccc-cccCCCCCEEEecCCcCCCC
Confidence 3367777777766532 222335677777777777655543 222 66677777777777777665
Q ss_pred chhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcccCceeecCccC-CCCcc-Cc
Q 042791 476 PETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVD-GSNTC-RL 553 (761)
Q Consensus 476 p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~l 553 (761)
|. .++|++|++++|.... +|. ..+++|++|++++|.+....|..++.+++|+.|++++|..... +..+. .+
T Consensus 96 ~~----~~~L~~L~L~~N~l~~-~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l 168 (487)
T 3oja_A 96 LV----GPSIETLHAANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (487)
T ss_dssp EE----CTTCCEEECCSSCCCC-EEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred CC----CCCcCEEECcCCcCCC-CCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC
Confidence 53 2677777777776333 332 2456777777777766665566667777777777776664432 22222 46
Q ss_pred ccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEE
Q 042791 554 ESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWI 633 (761)
Q Consensus 554 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 633 (761)
++|+.|+++++. +..++ ....+++|+.|++
T Consensus 169 ~~L~~L~Ls~N~-l~~~~-------------------------------------------------~~~~l~~L~~L~L 198 (487)
T 3oja_A 169 DTLEHLNLQYNF-IYDVK-------------------------------------------------GQVVFAKLKTLDL 198 (487)
T ss_dssp TTCCEEECTTSC-CCEEE-------------------------------------------------CCCCCTTCCEEEC
T ss_pred CcccEEecCCCc-ccccc-------------------------------------------------ccccCCCCCEEEC
Confidence 667777766531 11110 0112445666666
Q ss_pred EeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCcccc--CCCcccccCCccceeeccc
Q 042791 634 IFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFL--GIEENIIAFPKLKYLKIWA 711 (761)
Q Consensus 634 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~--~~~~~~~~~~~L~~L~l~~ 711 (761)
++|.+..+|..+..+++|+.|++++|... .+ |-....+.+++.|++.+|.+. .+|..+..+++|+.+++..
T Consensus 199 s~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~l------p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 199 SSNKLAFMGPEFQSAAGVTWISLRNNKLV-LI------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp CSSCCCEECGGGGGGTTCSEEECTTSCCC-EE------CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCCCCCHhHcCCCCccEEEecCCcCc-cc------chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccc
Confidence 66666666667777888888888887522 22 211223345666666677766 2566667788888888763
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=6e-16 Score=154.92 Aligned_cols=82 Identities=22% Similarity=0.195 Sum_probs=41.8
Q ss_pred cccCccccCCcCCccCch-hhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcccCc
Q 042791 460 IHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDR 538 (761)
Q Consensus 460 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 538 (761)
++|++|++++|.++.++. .+.++++|++|++++|......+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 345555555555554443 4555555555555555433223334555555555555555444333344555555555554
Q ss_pred eee
Q 042791 539 FVV 541 (761)
Q Consensus 539 ~~~ 541 (761)
.++
T Consensus 108 ~~n 110 (276)
T 2z62_A 108 VET 110 (276)
T ss_dssp TTS
T ss_pred CCC
Confidence 443
No 77
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.63 E-value=8.5e-15 Score=156.08 Aligned_cols=304 Identities=14% Similarity=0.032 Sum_probs=179.1
Q ss_pred CCCCCceecccchHHHHHHHH-hcCCccCCCCcEEEEE--EcCCCCcHHHHHHHHhcChhhhcc-----C-CeeEEEEec
Q 042791 7 LIDEGEVCGRVDEKNELLSKL-LCESSEQQNGLQVISL--VGLGGIGKTTLAQLAYNNDEVKRN-----F-EKVIWVCVS 77 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l-~~~~~~~~~~~~~v~i--~G~~GiGKTtla~~~~~~~~~~~~-----f-~~~~~v~~~ 77 (761)
...++.|+||+++++++.+++ .....+.....+.++| +|++|+||||||+++++ ..... + ..++|+.+.
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYVNAF 95 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEEEGG
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHH--HHHHHHhccCCceeEEEEECC
Confidence 344578999999999999988 4321100024567888 99999999999999997 33331 2 236788877
Q ss_pred CCCCHHHHHHHHHHHhcCCCCC-CCcHHHHHHHHHHHhC--CceEEEEEeCCCCCCc------cCchhHHHhhcCC---C
Q 042791 78 NTFDQIRIAKAIIEGLGESASG-LNEFQSLMSRIQSSIK--GKKNFLVLDDVWDGDY------NKWQPFFRCLKNG---L 145 (761)
Q Consensus 78 ~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~--~~~~LlvlDd~~~~~~------~~~~~l~~~~~~~---~ 145 (761)
...+...++..++..++...+. ..........+.+.+. +++++|||||+|.... ..+..+...+... .
T Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 7778889999999988764332 2234555566665553 6799999999976221 2222222333221 1
Q ss_pred --CCcEEEEEecchhhhhhc--------C-CCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcC---
Q 042791 146 --HGSKILVTTRNESVARMM--------G-STDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCK--- 211 (761)
Q Consensus 146 --~~~~iiiTtr~~~~~~~~--------~-~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--- 211 (761)
....+|+||+...+...+ . ....+++++++.+++.++|...+...... .....+.+..+++.++
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDK 253 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGG
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhc
Confidence 344588788765432111 1 12239999999999999997654311111 1123456788999999
Q ss_pred ---CCchhHHHHHHHhh------CC--CCHHHHHHHHhhhhhcccccccccccchhcccCCCCCCcchhHHhhhhcCCC-
Q 042791 212 ---GLPLAAKVIGNLLR------SK--STVKEWQRILESEMWKVQEIGQDLLAPLLLSYNDLPSNSMVKQCFSYCTVFP- 279 (761)
Q Consensus 212 ---g~Plal~~~~~~l~------~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~- 279 (761)
|+|..+..+..... +. -+.+.+..++..... ...+...+..++. ..+.++..++.+.
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~--~~~~~l~aia~l~~ 322 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSI--HELIILRLIAEATL 322 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCH--HHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCH--HHHHHHHHHHHHHh
Confidence 99976555443211 11 123444433322110 1234456677876 7788887777543
Q ss_pred -CCcccCHHHHHHHH--HH-cCCcccCCcchHHHHHHHHHHHHHhcCCccccc
Q 042791 280 -KDCIMNKEKLIDLW--MA-QGYLNADEDEEMETIGEEYFNILATRSFFQEFE 328 (761)
Q Consensus 280 -~~~~~~~~~l~~~w--~~-~g~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 328 (761)
.+..+....+...+ ++ ... .. . .........+++.|.+.+++....
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~-~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 323 GGMEWINAGLLRQRYEDASLTMY-NV-K-PRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp TTCSSBCHHHHHHHHHHHHHHHS-CC-C-CCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred cCCCCccHHHHHHHHHHHHHhhc-CC-C-CCCHHHHHHHHHHHHhCCCEEeec
Confidence 22344555544333 12 111 00 0 011233556789999999997654
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=5.7e-16 Score=154.43 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=30.5
Q ss_pred cccCCccceeecccccccccCCCCCccceEeeecCCCCcCCCcccCCCCC
Q 042791 698 IIAFPKLKYLKIWATEELEETTDIPRLSSLTIWYCPKLKVLPDYLLQTTA 747 (761)
Q Consensus 698 ~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~ 747 (761)
+..+++|++|++++|... +.+|+|+.|+++.|...+.+|..++.++.
T Consensus 201 ~~~l~~L~~L~l~~N~~~---~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 201 FDRLTSLQYIWLHDNPWD---CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTCTTCCEEECCSSCBC---CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HhCCcCCCEEEccCCCcc---ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 456777777777777543 44667777777777666666666554443
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=3.3e-17 Score=172.88 Aligned_cols=93 Identities=17% Similarity=0.068 Sum_probs=53.8
Q ss_pred hCCCCCCCceEEEEeeCC-----CCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccCCC
Q 042791 621 ALQPPLNVEELWIIFYGG-----NIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLGIE 695 (761)
Q Consensus 621 ~l~~~~~L~~L~l~~~~~-----~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~~~ 695 (761)
.+..+++|+.|++++|.+ ..+|..+..+++|++|+|++|. +... ....++
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-------i~~~------------------~~~~l~ 265 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-------LSAR------------------GAAAVV 265 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-------CCHH------------------HHHHHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-------Cchh------------------hHHHHH
Confidence 445566677777766665 3345556666666666666663 1000 000012
Q ss_pred ccc--ccCCccceeeccccccccc--------C-CCCCccceEeeecCCCCcCC
Q 042791 696 ENI--IAFPKLKYLKIWATEELEE--------T-TDIPRLSSLTIWYCPKLKVL 738 (761)
Q Consensus 696 ~~~--~~~~~L~~L~l~~~~~~~~--------~-~~l~~L~~L~l~~~~~l~~l 738 (761)
..+ +.+++|++|+|++|..... + ..+|+|++|++++|+.....
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 223 2377888888888876651 2 34688888888888755433
No 80
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=1.5e-17 Score=186.88 Aligned_cols=348 Identities=13% Similarity=0.071 Sum_probs=197.7
Q ss_pred CceEEEEEeecCCCC-----CcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccc
Q 042791 374 VKVRHLGLNFQRGAS-----FPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANR 448 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 448 (761)
.+++.|++..+.+.. ++.....+++|+.|+++++. ..+.......+..++++|++|++++|. .
T Consensus 156 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~l~~l~~~~~~L~~L~L~~~~---------~ 223 (594)
T 2p1m_B 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA---SEVSFSALERLVTRCPNLKSLKLNRAV---------P 223 (594)
T ss_dssp TTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC---SCCCHHHHHHHHHHCTTCCEEECCTTS---------C
T ss_pred CCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC---CcCCHHHHHHHHHhCCCCcEEecCCCC---------c
Confidence 456666665554222 22233456677777776664 122333344445567777777777642 2
Q ss_pred ccccccchhcccccCccccCCcC-------CccCchhhhccCCCcEE-ecCCccCcccccccccccccccEeecCCcccc
Q 042791 449 IKEIPENVGKLIHLKYLNLSELG-------IERLPETLCELYNLQKL-DIRRCRNLRELPAGIGKLMNMRTLLNGETYAL 520 (761)
Q Consensus 449 l~~lp~~~~~l~~L~~L~l~~~~-------i~~lp~~~~~l~~L~~L-~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 520 (761)
+..+|..+..+++|++|+++.+. +..++..+.++++|+.| .+.+.. ...+|..+..+++|++|++++|...
T Consensus 224 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCC
T ss_pred HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCC
Confidence 23456666677777777755442 33455566777777777 444332 3446665567899999999998743
Q ss_pred cc-ccccCCCCCCCcccCceeecCc-cCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccc-cccCCCCcEEEEe
Q 042791 521 KY-MPIGISKLTNLRTLDRFVVGGG-VDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQL-YNKKNLLRLHLVF 597 (761)
Q Consensus 521 ~~-~p~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l-~~~~~L~~L~l~~ 597 (761)
.. ++..+..+++|+.|++.++... ........+++|+.|++.++.... ......+.......+ ..|++|+.|.+..
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g-~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFV-MEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTC-SSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccc-cccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 32 2223567889999988766211 011112246778888774321000 000011111111122 3588999997766
Q ss_pred ecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEe------eCCCCCC------chhhhhcCCcEEEeecCCCCCC-
Q 042791 598 GRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIF------YGGNIFP------KWLTLLTNLRNLTLASCVNCEH- 664 (761)
Q Consensus 598 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~------~~~~~~p------~~~~~l~~L~~L~l~~~~~~~~- 664 (761)
+.+. ..........+++|+.|++.. +..+..| ..+..+++|+.|+++++ +++
T Consensus 382 ~~l~-------------~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~--l~~~ 446 (594)
T 2p1m_B 382 RQMT-------------NAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL--LTDK 446 (594)
T ss_dssp SCCC-------------HHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS--CCHH
T ss_pred CCcC-------------HHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc--ccHH
Confidence 6531 112222222468899999992 2233222 23567899999999662 211
Q ss_pred -CCCCCCCCcceEEeccCcCceEeCccccC--CCcccccCCccceeeccccccccc-----CCCCCccceEeeecCCCCc
Q 042791 665 -LPPLGKLPLEKLVIDDLKSVKSVGNEFLG--IEENIIAFPKLKYLKIWATEELEE-----TTDIPRLSSLTIWYCPKLK 736 (761)
Q Consensus 665 -~~~~~~lpl~~l~l~~l~~L~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~-----~~~l~~L~~L~l~~~~~l~ 736 (761)
++.++. .+.+++.|++.+|.++. ++....++++|++|++++|..... ...+++|++|++++|+...
T Consensus 447 ~~~~l~~------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 447 VFEYIGT------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HHHHHHH------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred HHHHHHH------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 000111 13456667777777654 222236799999999999987432 4468999999999998633
Q ss_pred CCCccc-CCCCCccEEEEecC
Q 042791 737 VLPDYL-LQTTALQELRIWGC 756 (761)
Q Consensus 737 ~l~~~l-~~l~~L~~L~l~~c 756 (761)
.....+ ..+|.|+...+..+
T Consensus 521 ~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 521 GACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHHHHHHCTTEEEEEECSS
T ss_pred HHHHHHHHhCCCCEEEEecCC
Confidence 211222 35677766666554
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=2.2e-15 Score=151.30 Aligned_cols=150 Identities=15% Similarity=0.077 Sum_probs=82.6
Q ss_pred CceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccc
Q 042791 374 VKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIP 453 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp 453 (761)
..++.+.++.+.+..+|..+. ++++.|++++|.+. .+.+..+..+++|++|++++|.++ .++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~------~~~~~~~~~l~~L~~L~L~~n~l~----------~~~ 71 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLY------TFSLATLMPYTRLTQLNLDRAELT----------KLQ 71 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCS------EEEGGGGTTCTTCCEEECTTSCCC----------EEE
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCC------ccCHHHhhcCCCCCEEECCCCccC----------ccc
Confidence 345556666666666665543 46666666666541 222233556666666666654443 233
Q ss_pred cchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCC
Q 042791 454 ENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNL 533 (761)
Q Consensus 454 ~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 533 (761)
.. ..+++|++|++++|.++.+|..+..+++|++|++++|......|..+..+++|++|++++|.+....+..+..+++|
T Consensus 72 ~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 72 VD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp CC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 22 45666666666666666666666666666666666665333333445666666666666664433322334455555
Q ss_pred cccCceeec
Q 042791 534 RTLDRFVVG 542 (761)
Q Consensus 534 ~~L~l~~~~ 542 (761)
+.|++++|.
T Consensus 151 ~~L~L~~N~ 159 (290)
T 1p9a_G 151 EKLSLANNN 159 (290)
T ss_dssp CEEECTTSC
T ss_pred CEEECCCCc
Confidence 555544443
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=5.8e-15 Score=148.20 Aligned_cols=80 Identities=24% Similarity=0.275 Sum_probs=40.6
Q ss_pred ccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccCc-hhhhccCCCcEEecCCccCccccccc
Q 042791 424 SKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERLP-ETLCELYNLQKLDIRRCRNLRELPAG 502 (761)
Q Consensus 424 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~ 502 (761)
.++++++.++++++ .++.+|..+. +++++|++++|.++.++ ..+..+++|++|++++|. +..++..
T Consensus 7 ~~l~~l~~l~~~~~----------~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 73 (290)
T 1p9a_G 7 SKVASHLEVNCDKR----------NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD 73 (290)
T ss_dssp ECSTTCCEEECTTS----------CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC
T ss_pred cccCCccEEECCCC----------CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC
Confidence 44555666665532 2334444432 45556666666555432 345555556666665555 3333332
Q ss_pred ccccccccEeecCCc
Q 042791 503 IGKLMNMRTLLNGET 517 (761)
Q Consensus 503 ~~~l~~L~~L~l~~~ 517 (761)
..+++|++|++++|
T Consensus 74 -~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHN 87 (290)
T ss_dssp -SCCTTCCEEECCSS
T ss_pred -CCCCcCCEEECCCC
Confidence 45555555555555
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=8.7e-17 Score=169.62 Aligned_cols=260 Identities=14% Similarity=0.125 Sum_probs=158.4
Q ss_pred ecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccc-cccccccccchhcccc
Q 042791 383 FQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHE-ANRIKEIPENVGKLIH 461 (761)
Q Consensus 383 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~lp~~~~~l~~ 461 (761)
......++..+..+++|+.|++++|.+.... .......+..+++|++|+|++|.+...... ...+..++..+..+++
T Consensus 18 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 18 TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEA--ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp SHHHHTTSHHHHHCSCCCEEECTTSEECHHH--HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhcCCCccEEECCCCCCCHHH--HHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 3344456667788889999999888752110 011223366789999999998755421000 0123333344578889
Q ss_pred cCccccCCcCCcc-----CchhhhccCCCcEEecCCccCccc----cccccccc---------ccccEeecCCcccc-cc
Q 042791 462 LKYLNLSELGIER-----LPETLCELYNLQKLDIRRCRNLRE----LPAGIGKL---------MNMRTLLNGETYAL-KY 522 (761)
Q Consensus 462 L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~----lp~~~~~l---------~~L~~L~l~~~~~~-~~ 522 (761)
|++|++++|.++. +|..+..+++|++|+|++|..... ++..+..+ ++|++|++++|.+. ..
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 9999999998875 777888899999999999885433 33334444 89999999988765 33
Q ss_pred cc---ccCCCCCCCcccCceeecCc------cCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcE
Q 042791 523 MP---IGISKLTNLRTLDRFVVGGG------VDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRL 593 (761)
Q Consensus 523 ~p---~~l~~l~~L~~L~l~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L 593 (761)
+| ..+..+++|+.|++++|... ..+..+..+++|+.|++++|. +.. .....+ ...+..+++|+.|
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~----~g~~~l-~~~l~~~~~L~~L 249 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTH----LGSSAL-AIALKSWPNLREL 249 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHH----HHHHHH-HHHGGGCTTCCEE
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCc----HHHHHH-HHHHccCCCcCEE
Confidence 44 34667778888888777654 122245566677777776532 110 000111 1134566777777
Q ss_pred EEEeecccCCCCCcCcccchhHHHHHhhC--CCCCCCceEEEEeeCCCC-----CCchh-hhhcCCcEEEeecCC
Q 042791 594 HLVFGRVVDGEGEEGRRKNEKDKQLLEAL--QPPLNVEELWIIFYGGNI-----FPKWL-TLLTNLRNLTLASCV 660 (761)
Q Consensus 594 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~-----~p~~~-~~l~~L~~L~l~~~~ 660 (761)
+++.|.+.+ .....++..+ ..+++|+.|++++|.+.. +|..+ .++++|+.|++++|.
T Consensus 250 ~L~~n~i~~----------~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 250 GLNDCLLSA----------RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp ECTTCCCCH----------HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ECCCCCCch----------hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 776665311 1122233444 236677777777776655 56555 456777777777775
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=3.7e-16 Score=156.42 Aligned_cols=175 Identities=19% Similarity=0.205 Sum_probs=100.2
Q ss_pred CceEEEEEeecCCCCCcc-cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccc
Q 042791 374 VKVRHLGLNFQRGASFPM-SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEI 452 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 452 (761)
..++.++++.+.+..++. .+..+++|++|++++|.+. .+++..+.++++|++|++++|.+.+ ..
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~---------~~ 92 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------TIEDGAYQSLSHLSTLILTGNPIQS---------LA 92 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC------EECTTTTTTCTTCCEEECTTCCCCE---------EC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC------ccCHHHccCCcCCCEEECCCCccCc---------cC
Confidence 356666666666665554 5666677777776666542 2222335566677777776554432 12
Q ss_pred ccchhcccccCccccCCcCCccCch-hhhccCCCcEEecCCccCcc-cccccccccccccEeecCCccccccccccCCCC
Q 042791 453 PENVGKLIHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLR-ELPAGIGKLMNMRTLLNGETYALKYMPIGISKL 530 (761)
Q Consensus 453 p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l 530 (761)
|..+..+++|++|++++|.+..++. .+..+++|++|++++|.... .+|..+..+++|++|++++|.+....+..+..+
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 172 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh
Confidence 3445666677777777766665554 46666677777777666433 256666667777777777665544444445555
Q ss_pred CCCc----ccCceeecCccCCCCccCcccccCccCCc
Q 042791 531 TNLR----TLDRFVVGGGVDGSNTCRLESLKNLQLRG 563 (761)
Q Consensus 531 ~~L~----~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 563 (761)
.+|+ .|++++|.....+.......+|+.|++++
T Consensus 173 ~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~ 209 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 209 (276)
T ss_dssp HTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCS
T ss_pred hhccccceeeecCCCcccccCccccCCCcccEEECCC
Confidence 5555 44445554444443333334555555554
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=2.6e-15 Score=152.93 Aligned_cols=113 Identities=16% Similarity=0.122 Sum_probs=79.6
Q ss_pred CCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccch--hcccccCccccCCcCCc
Q 042791 396 FDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENV--GKLIHLKYLNLSELGIE 473 (761)
Q Consensus 396 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~--~~l~~L~~L~l~~~~i~ 473 (761)
...++.+.+.++.+....+. .+.. +..+++|+.|++++|.+.+ ..|..+ ..+++|++|++++|.++
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~-~~~~--~~~~~~L~~L~l~~n~l~~---------~~~~~~~~~~~~~L~~L~Ls~n~i~ 130 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLV-GALR--VLAYSRLKELTLEDLKITG---------TMPPLPLEATGLALSSLRLRNVSWA 130 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHH-HHHH--HHHHSCCCEEEEESCCCBS---------CCCCCSSSCCCBCCSSCEEESCCCS
T ss_pred hcceeEEEEeCCcCCHHHHH-HHHH--hcccCceeEEEeeCCEecc---------chhhhhhhccCCCCCEEEeeccccc
Confidence 34567777776654221111 1111 2345779999999887765 456665 78899999999999987
Q ss_pred c-Cc----hhhhccCCCcEEecCCccCcccccccccccccccEeecCCcccc
Q 042791 474 R-LP----ETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYAL 520 (761)
Q Consensus 474 ~-lp----~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 520 (761)
. .| ..+..+++|++|++++|......|..+..+++|++|++++|...
T Consensus 131 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 182 (310)
T 4glp_A 131 TGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL 182 (310)
T ss_dssp STTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC
T ss_pred chhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc
Confidence 4 22 33457889999999999866666677889999999999998654
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=1.1e-15 Score=149.43 Aligned_cols=160 Identities=16% Similarity=0.188 Sum_probs=96.3
Q ss_pred ecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeecccc-ccCCcccccccccccc-chhccc
Q 042791 383 FQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFY-ISGSHHEANRIKEIPE-NVGKLI 460 (761)
Q Consensus 383 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~lp~-~~~~l~ 460 (761)
+.....+|. + .++|+.|++++|.+. .+++..|.++++|++|++++|. +. .+|. .+..++
T Consensus 20 c~~l~~ip~-~--~~~l~~L~l~~n~l~------~i~~~~~~~l~~L~~L~l~~n~~l~----------~i~~~~f~~l~ 80 (239)
T 2xwt_C 20 CKDIQRIPS-L--PPSTQTLKLIETHLR------TIPSHAFSNLPNISRIYVSIDVTLQ----------QLESHSFYNLS 80 (239)
T ss_dssp ECSCSSCCC-C--CTTCCEEEEESCCCS------EECTTTTTTCTTCCEEEEECCSSCC----------EECTTTEESCT
T ss_pred ccCccccCC-C--CCcccEEEEeCCcce------EECHHHccCCCCCcEEeCCCCCCcc----------eeCHhHcCCCc
Confidence 334556665 3 236777777777652 2333346677777777777553 32 3443 466777
Q ss_pred ccCccccCC-cCCccCc-hhhhccCCCcEEecCCccCccccccccccccccc---EeecCCccccccccc-cCCCCCCCc
Q 042791 461 HLKYLNLSE-LGIERLP-ETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMR---TLLNGETYALKYMPI-GISKLTNLR 534 (761)
Q Consensus 461 ~L~~L~l~~-~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~---~L~l~~~~~~~~~p~-~l~~l~~L~ 534 (761)
+|++|++++ |.++.+| ..|.++++|++|++++|. +..+|. +..+++|+ +|++++|..+..+|. .+..+++|+
T Consensus 81 ~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 81 KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcce
Confidence 777777777 6777665 356677777777777776 444665 66666666 777777733333333 366677777
Q ss_pred -ccCceeecCccCCCCccCcccccCccCCc
Q 042791 535 -TLDRFVVGGGVDGSNTCRLESLKNLQLRG 563 (761)
Q Consensus 535 -~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 563 (761)
.|++++|.....+.......+|+.|++++
T Consensus 159 ~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 159 LTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred eEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence 77666665444443333334555555554
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=4.4e-15 Score=147.88 Aligned_cols=196 Identities=18% Similarity=0.185 Sum_probs=116.2
Q ss_pred EEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccc-
Q 042791 377 RHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPEN- 455 (761)
Q Consensus 377 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~- 455 (761)
+.++.+.+.+..+|..+. ++++.|++++|.+.. +++..|.++++|++|++++|.+. .+|..
T Consensus 19 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~----------~i~~~~ 80 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSS------LPSKAFHRLTKLRLLYLNDNKLQ----------TLPAGI 80 (270)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSC------CCTTSSSSCTTCCEEECCSSCCS----------CCCTTT
T ss_pred CEEEccCCCCCccCCCCC--CCCCEEECcCCCCCe------eCHHHhcCCCCCCEEECCCCccC----------eeChhh
Confidence 456666666666665443 567777777766532 22223566777777777755443 34433
Q ss_pred hhcccccCccccCCcCCccCch-hhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCc
Q 042791 456 VGKLIHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLR 534 (761)
Q Consensus 456 ~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 534 (761)
+..+++|++|++++|.++.+|. .+..+++|++|++++|......|..+..+++|++|++++|.+....+..+..+++|+
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence 3566777777777777776654 346677777777777664444444456777777777777754433333366677777
Q ss_pred ccCceeecCccCCC-CccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecc
Q 042791 535 TLDRFVVGGGVDGS-NTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRV 600 (761)
Q Consensus 535 ~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l 600 (761)
.|++++|.....+. .+..+++|+.|+++++ .+..++. ..+..+++|+.|+++.|.+
T Consensus 161 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~---------~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPE---------GAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCT---------TTTTTCTTCCEEECCSSCB
T ss_pred eeEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCH---------HHhccccCCCEEEecCCCe
Confidence 77777666554443 3456677777777654 2222211 1244566777777777763
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=4.1e-16 Score=161.30 Aligned_cols=239 Identities=15% Similarity=0.067 Sum_probs=136.5
Q ss_pred hccC--CcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCcc--CchhhhccCCCcEEecCCccCccc
Q 042791 423 FSKL--ACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIER--LPETLCELYNLQKLDIRRCRNLRE 498 (761)
Q Consensus 423 ~~~~--~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~ 498 (761)
+..+ ++++.|++++|.+.+ .+..+..+++|++|++++|.++. +|..+..+++|++|++++|.....
T Consensus 64 ~~~~~~~~l~~L~l~~n~l~~----------~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~ 133 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRSFMDQ----------PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP 133 (336)
T ss_dssp HHHHHHTTCSEEECTTCEECS----------CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH
T ss_pred HHhhhhccceEEEcCCccccc----------cchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH
Confidence 4444 788888888766554 23335567888888888888762 777788888888888888876556
Q ss_pred ccccccccccccEeecCCccccc--cccccCCCCCCCcccCceee-cCccCCCCccCcccccCccCCceEEEcCCCCCCC
Q 042791 499 LPAGIGKLMNMRTLLNGETYALK--YMPIGISKLTNLRTLDRFVV-GGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSH 575 (761)
Q Consensus 499 lp~~~~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 575 (761)
.|..+..+++|++|++++|.... .++..+..+++|+.|+++++ .....
T Consensus 134 ~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~----------------------------- 184 (336)
T 2ast_B 134 IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK----------------------------- 184 (336)
T ss_dssp HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-----------------------------
T ss_pred HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-----------------------------
Confidence 77777788888888888884332 24444555555655555444 21110
Q ss_pred hhHHhhccccccC-CCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeC-CC-CCCchhhhhcCCc
Q 042791 576 VDEAERLQLYNKK-NLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYG-GN-IFPKWLTLLTNLR 652 (761)
Q Consensus 576 ~~~l~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~-~~p~~~~~l~~L~ 652 (761)
.....+..++ +|+.|+++.+.+. .....+...+..+++|+.|++++|. .+ ..+..+..+++|+
T Consensus 185 ---~~~~~~~~l~~~L~~L~l~~~~~~-----------~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 185 ---HVQVAVAHVSETITQLNLSGYRKN-----------LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp ---HHHHHHHHSCTTCCEEECCSCGGG-----------SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred ---HHHHHHHhcccCCCEEEeCCCccc-----------CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 0000122334 4444544443200 0112222223335566666666655 22 2344555566666
Q ss_pred EEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccCCCcccccCCccceeeccccccccc-CCCC-CccceEeee
Q 042791 653 NLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLGIEENIIAFPKLKYLKIWATEELEE-TTDI-PRLSSLTIW 730 (761)
Q Consensus 653 ~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l-~~L~~L~l~ 730 (761)
+|++++|..... . ....+..+++|++|++++| .... +..+ .+|..|+++
T Consensus 251 ~L~l~~~~~~~~------------------------~----~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~ 301 (336)
T 2ast_B 251 HLSLSRCYDIIP------------------------E----TLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQIN 301 (336)
T ss_dssp EEECTTCTTCCG------------------------G----GGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEES
T ss_pred EeeCCCCCCCCH------------------------H----HHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEe
Confidence 666666531100 0 0012456889999999988 2221 2333 247777788
Q ss_pred cCCCCcCCCcccC
Q 042791 731 YCPKLKVLPDYLL 743 (761)
Q Consensus 731 ~~~~l~~l~~~l~ 743 (761)
+|...+..|..++
T Consensus 302 ~n~l~~~~~~~~~ 314 (336)
T 2ast_B 302 CSHFTTIARPTIG 314 (336)
T ss_dssp CCCSCCTTCSSCS
T ss_pred cccCccccCCccc
Confidence 8877666666554
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=5.6e-15 Score=153.11 Aligned_cols=230 Identities=16% Similarity=0.136 Sum_probs=139.3
Q ss_pred cccccccccchhcccccCccccCCcCCccCch-hhhccCCCcEEecCCccCcccccc-cccccccccEeec-CCcccccc
Q 042791 446 ANRIKEIPENVGKLIHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRTLLN-GETYALKY 522 (761)
Q Consensus 446 ~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l-~~~~~~~~ 522 (761)
+..++.+|..+ .+++++|++++|.|+.+|. .|.++++|++|+|++|...+.+|. .|.++++|.++.. .+|.+...
T Consensus 18 ~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 18 ESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp STTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 44566788766 3688999999999998886 578999999999999987677765 4678888776544 44544444
Q ss_pred ccccCCCCCCCcccCceeecCccCCCC-ccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeeccc
Q 042791 523 MPIGISKLTNLRTLDRFVVGGGVDGSN-TCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVV 601 (761)
Q Consensus 523 ~p~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~ 601 (761)
.|..+..+++|+.|++++|.....+.. .....++..|++.++..+..++.
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~----------------------------- 146 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER----------------------------- 146 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT-----------------------------
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc-----------------------------
Confidence 456688899999999888876554432 12223333333322111111000
Q ss_pred CCCCCcCcccchhHHHHHhhCCC-CCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCCcceEEecc
Q 042791 602 DGEGEEGRRKNEKDKQLLEALQP-PLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLPLEKLVIDD 680 (761)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lpl~~l~l~~ 680 (761)
..+.. ...++.|+++++.+..+|.......+|++|++.+|..++.+|.- .+-.+.+
T Consensus 147 ------------------~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~-----~f~~l~~ 203 (350)
T 4ay9_X 147 ------------------NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND-----VFHGASG 203 (350)
T ss_dssp ------------------TSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTT-----TTTTEEC
T ss_pred ------------------cchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHH-----HhccCcc
Confidence 00111 12466677777777777666666678888888877655555421 1112345
Q ss_pred CcCceEeCccccCCCcccccCCccceeeccccccccc---CCCCCccceEeeec
Q 042791 681 LKSVKSVGNEFLGIEENIIAFPKLKYLKIWATEELEE---TTDIPRLSSLTIWY 731 (761)
Q Consensus 681 l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~l~~L~~L~l~~ 731 (761)
++.|++++|.++.+|. ..+.+|+.|.+.++..+.. +..+++|+.+++.+
T Consensus 204 L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 204 PVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred cchhhcCCCCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 6666666677776663 3355555555544444433 34556666666654
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=2.8e-15 Score=149.32 Aligned_cols=174 Identities=24% Similarity=0.297 Sum_probs=111.5
Q ss_pred CceEEEEEeecCCCCCcc-cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccc
Q 042791 374 VKVRHLGLNFQRGASFPM-SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEI 452 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 452 (761)
..++.|+++.+.+..++. .+..+++|++|++++|.+. .++..+|.++++|++|++++|.+. .+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~i~~~~~~~l~~L~~L~l~~n~l~----------~~ 100 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ------TLPAGIFKELKNLETLWVTDNKLQ----------AL 100 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS------CCCTTTTSSCTTCCEEECCSSCCC----------CC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC------eeChhhhcCCCCCCEEECCCCcCC----------cC
Confidence 456777777777776664 5677777777777776652 223334566777777777755544 23
Q ss_pred c-cchhcccccCccccCCcCCccCch-hhhccCCCcEEecCCccCcccccc-cccccccccEeecCCccccccccccCCC
Q 042791 453 P-ENVGKLIHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRTLLNGETYALKYMPIGISK 529 (761)
Q Consensus 453 p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 529 (761)
| ..+..+++|++|++++|.++.+|. .+..+++|++|++++|. +..+|. .+..+++|++|++++|.+....+..+..
T Consensus 101 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 179 (270)
T 2o6q_A 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179 (270)
T ss_dssp CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhcc
Confidence 3 335667777777777777776553 45677777777777776 334443 3567777777777777554444444667
Q ss_pred CCCCcccCceeecCccCCC-CccCcccccCccCCce
Q 042791 530 LTNLRTLDRFVVGGGVDGS-NTCRLESLKNLQLRGK 564 (761)
Q Consensus 530 l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~ 564 (761)
+++|+.|++++|.....+. .+..+++|+.|+++++
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 7777777777776555443 2455667777776654
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=1.2e-15 Score=149.10 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=65.4
Q ss_pred cccccccchhcccccCccccCCcCCccCch-hhhccCCCcEEecCCccCcccccc-cccccccccEeecCC-cccccccc
Q 042791 448 RIKEIPENVGKLIHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRTLLNGE-TYALKYMP 524 (761)
Q Consensus 448 ~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~-~~~~~~~p 524 (761)
.++.+|. + ..+|++|++++|.++.+|. .+.++++|++|++++|..+..+|. .+..+++|++|++++ |.+ ..+|
T Consensus 22 ~l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l-~~i~ 97 (239)
T 2xwt_C 22 DIQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL-TYID 97 (239)
T ss_dssp SCSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC-CEEC
T ss_pred CccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe-eEcC
Confidence 3556776 3 2478888888888887765 677888888888888764555553 577888888888887 533 3444
Q ss_pred -ccCCCCCCCcccCceeecCccC
Q 042791 525 -IGISKLTNLRTLDRFVVGGGVD 546 (761)
Q Consensus 525 -~~l~~l~~L~~L~l~~~~~~~~ 546 (761)
..+..+++|+.|++++|.....
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~l 120 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMF 120 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSC
T ss_pred HHHhCCCCCCCEEeCCCCCCccc
Confidence 4566777777777777664443
No 92
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.57 E-value=2.3e-14 Score=149.17 Aligned_cols=298 Identities=12% Similarity=0.094 Sum_probs=174.8
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCC----
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF---- 80 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~---- 80 (761)
.|+..+..|+||+++++++.+++... +.++|+|++|+|||||++++++ .. .++|+.+....
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~--~~-----~~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLN--ER-----PGILIDCRELYAERG 70 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHH--HS-----SEEEEEHHHHHHTTT
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHH--Hc-----CcEEEEeeccccccc
Confidence 35567788999999999999998631 5899999999999999999987 32 27788765432
Q ss_pred --CHHHHHHHHHHHhcC---------------C-CC--CCCcHHHHHHHHHHHhCC-ceEEEEEeCCCCCCc------cC
Q 042791 81 --DQIRIAKAIIEGLGE---------------S-AS--GLNEFQSLMSRIQSSIKG-KKNFLVLDDVWDGDY------NK 133 (761)
Q Consensus 81 --~~~~~~~~i~~~l~~---------------~-~~--~~~~~~~~~~~~~~~l~~-~~~LlvlDd~~~~~~------~~ 133 (761)
+...+...+...+.. . .. ......+..+.+.+.... ++++|||||++.... ..
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 150 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKE 150 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHH
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhh
Confidence 556666666665432 0 00 113455566666555432 389999999966321 11
Q ss_pred chhHHHhhcCCCCCcEEEEEecchhhhhh----------c-CC-CCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhH
Q 042791 134 WQPFFRCLKNGLHGSKILVTTRNESVARM----------M-GS-TDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEP 201 (761)
Q Consensus 134 ~~~l~~~~~~~~~~~~iiiTtr~~~~~~~----------~-~~-~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~ 201 (761)
+...+..+.....+.++|+|++....... + +. ...+++.+|+.+|+.+++...+..... ....+
T Consensus 151 ~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~----~~~~~ 226 (350)
T 2qen_A 151 LLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL----DVPEN 226 (350)
T ss_dssp HHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC----CCCHH
T ss_pred HHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC----CCCHH
Confidence 11222222222246789999887543111 1 11 237899999999999999875432111 12245
Q ss_pred HHHHHHHhcCCCchhHHHHHHHhhCCCCHHHHHHHH-hhhhhcccccccccccchhcccCCCCCCcchhHHhhhhcCCCC
Q 042791 202 IGRKIACKCKGLPLAAKVIGNLLRSKSTVKEWQRIL-ESEMWKVQEIGQDLLAPLLLSYNDLPSNSMVKQCFSYCTVFPK 280 (761)
Q Consensus 202 ~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~ 280 (761)
.+..+++.++|+|+++..++..+....+.+.+...+ +.....+ ..++.. ..+ . ++ ..+..+..++. .
T Consensus 227 ~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~---l~~-~-~~--~~~~~l~~la~-g- 294 (350)
T 2qen_A 227 EIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLI---MGELEE---LRR-R-SP--RYVDILRAIAL-G- 294 (350)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---HHHHHH---HHH-H-CH--HHHHHHHHHHT-T-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHH---HHHHHH---HHh-C-Ch--hHHHHHHHHHh-C-
Confidence 678999999999999999987653321222222111 1100000 011111 111 1 33 67777777776 2
Q ss_pred CcccCHHHHHHHHHHcCCcccCCcchHHHHHHHHHHHHHhcCCccccccCCCCCeeEEEE-chHHHHHH
Q 042791 281 DCIMNKEKLIDLWMAQGYLNADEDEEMETIGEEYFNILATRSFFQEFEKNDDDNIRSCKM-HDIVHDFA 348 (761)
Q Consensus 281 ~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~-hd~i~~~~ 348 (761)
......+........ . +. .......+++.|.+.+++.... + .+++ |++++++.
T Consensus 295 --~~~~~~l~~~~~~~~-~----~~-~~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~ 348 (350)
T 2qen_A 295 --YNRWSLIRDYLAVKG-T----KI-PEPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVL 348 (350)
T ss_dssp --CCSHHHHHHHHHHTT-C----CC-CHHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHH
T ss_pred --CCCHHHHHHHHHHHh-C----CC-CHHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHH
Confidence 134444433322211 0 01 1234567789999999997641 1 3444 66777664
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.56 E-value=1.1e-14 Score=147.86 Aligned_cols=164 Identities=18% Similarity=0.194 Sum_probs=114.4
Q ss_pred CceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccc
Q 042791 374 VKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIP 453 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp 453 (761)
.+++.+++..+.+..++ .+..+++|+.|++++|.+.. +++ +..+++|++|++++|.+. .++
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~------~~~--~~~l~~L~~L~L~~n~l~----------~~~ 101 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD------LAP--LKNLTKITELELSGNPLK----------NVS 101 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG--GTTCCSCCEEECCSCCCS----------CCG
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCC------Chh--HccCCCCCEEEccCCcCC----------Cch
Confidence 46677777777777776 67778888888888876532 222 677888888888866554 343
Q ss_pred cchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCC
Q 042791 454 ENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNL 533 (761)
Q Consensus 454 ~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 533 (761)
.+..+++|++|++++|.++.+|. +..+++|++|++++|. +..++. +..+++|++|++++|.+. .++. +..+++|
T Consensus 102 -~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L 175 (308)
T 1h6u_A 102 -AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVS-DLTP-LANLSKL 175 (308)
T ss_dssp -GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTC
T ss_pred -hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCC-CChh-hcCCCCC
Confidence 46778888888888888877764 7788888888888877 444554 778888888888888543 3443 6777777
Q ss_pred cccCceeecCccCCCCccCcccccCccCCc
Q 042791 534 RTLDRFVVGGGVDGSNTCRLESLKNLQLRG 563 (761)
Q Consensus 534 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 563 (761)
+.|++++|.....+. +..+++|+.|++++
T Consensus 176 ~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 176 TTLKADDNKISDISP-LASLPNLIEVHLKN 204 (308)
T ss_dssp CEEECCSSCCCCCGG-GGGCTTCCEEECTT
T ss_pred CEEECCCCccCcChh-hcCCCCCCEEEccC
Confidence 777777766554433 45556666666664
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=8.4e-15 Score=144.05 Aligned_cols=171 Identities=19% Similarity=0.152 Sum_probs=115.2
Q ss_pred eEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccc
Q 042791 376 VRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPEN 455 (761)
Q Consensus 376 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~ 455 (761)
.+.++.+.+.+..+|..+. +.++.|++++|.+.. +.+..+.++++|++|++++|.+.+ ..|..
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~ 78 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLAT------LSDATFRGLTKLTWLNLDYNQLQT---------LSAGV 78 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECTTSCCCC---------CCTTT
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCc------cCHhHhcCcccCCEEECCCCcCCc---------cCHhH
Confidence 3456667777777776654 578888888877532 222336778888888888766654 23445
Q ss_pred hhcccccCccccCCcCCccCch-hhhccCCCcEEecCCccCcccccc-cccccccccEeecCCccccccccccCCCCCCC
Q 042791 456 VGKLIHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRTLLNGETYALKYMPIGISKLTNL 533 (761)
Q Consensus 456 ~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 533 (761)
+..+++|++|++++|.++.+|. .+..+++|++|++++|.. ..+|. .+..+++|++|++++|.+....+..++.+++|
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcC-CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 6778888888888888886664 467788888888888774 44444 35778888888888885544434457777888
Q ss_pred cccCceeecCccCCC-CccCcccccCccCCce
Q 042791 534 RTLDRFVVGGGVDGS-NTCRLESLKNLQLRGK 564 (761)
Q Consensus 534 ~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~ 564 (761)
+.|++++|.....+. .+..+++|+.|+++++
T Consensus 158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 888877776554443 3455666666666643
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=5.8e-15 Score=150.32 Aligned_cols=110 Identities=15% Similarity=0.078 Sum_probs=67.6
Q ss_pred CcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCc-cCchhh--hccCCCcEEecCCccCccccc---
Q 042791 427 ACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIE-RLPETL--CELYNLQKLDIRRCRNLRELP--- 500 (761)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~--~~l~~L~~L~l~~~~~~~~lp--- 500 (761)
..++.|.+..+.++ ...+..++.. ..+++|++|++++|.+. ..|..+ ..+++|++|++++|......|
T Consensus 64 ~~l~~l~l~~~~~~-----~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~ 137 (310)
T 4glp_A 64 LRVRRLTVGAAQVP-----AQLLVGALRV-LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA 137 (310)
T ss_dssp CCCCEEEECSCCCB-----HHHHHHHHHH-HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH
T ss_pred cceeEEEEeCCcCC-----HHHHHHHHHh-cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH
Confidence 34666777655443 1222223222 23456888888887776 455555 777788888888777554433
Q ss_pred -ccccccccccEeecCCccccccccccCCCCCCCcccCceeec
Q 042791 501 -AGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVG 542 (761)
Q Consensus 501 -~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 542 (761)
..+..+++|++|++++|.+....|..++.+++|++|++++|.
T Consensus 138 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 138 ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence 233567777888887776655555566667777777666654
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=7.6e-15 Score=148.93 Aligned_cols=146 Identities=17% Similarity=0.223 Sum_probs=89.7
Q ss_pred cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcC
Q 042791 392 SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELG 471 (761)
Q Consensus 392 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~ 471 (761)
...++++|+.|+++++.+.. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~------l~--~~~~l~~L~~L~L~~n~i~----------~~~~-~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTT------IE--GVQYLNNLIGLELKDNQIT----------DLAP-LKNLTKITELELSGNP 96 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCC------CT--TGGGCTTCCEEECCSSCCC----------CCGG-GTTCCSCCEEECCSCC
T ss_pred cHHHcCCcCEEEeeCCCccC------ch--hhhccCCCCEEEccCCcCC----------CChh-HccCCCCCEEEccCCc
Confidence 34457777777777776532 11 1566777777777755443 3444 6677777777777777
Q ss_pred CccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcccCceeecCccCCCCcc
Q 042791 472 IERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSNTC 551 (761)
Q Consensus 472 i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~ 551 (761)
++.+| .+..+++|++|++++|. +..+|. +..+++|++|++++|.+.. ++. +..+++|+.|++++|.....+. +.
T Consensus 97 l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~ 170 (308)
T 1h6u_A 97 LKNVS-AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP-LA 170 (308)
T ss_dssp CSCCG-GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG-GT
T ss_pred CCCch-hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCCChh-hc
Confidence 77665 56777777777777776 444554 6777777777777774432 332 5566666666665554443322 33
Q ss_pred CcccccCccCC
Q 042791 552 RLESLKNLQLR 562 (761)
Q Consensus 552 ~l~~L~~L~l~ 562 (761)
.+++|+.|+++
T Consensus 171 ~l~~L~~L~l~ 181 (308)
T 1h6u_A 171 NLSKLTTLKAD 181 (308)
T ss_dssp TCTTCCEEECC
T ss_pred CCCCCCEEECC
Confidence 44444444444
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=1.9e-16 Score=165.07 Aligned_cols=249 Identities=13% Similarity=0.016 Sum_probs=142.4
Q ss_pred HHHHhccCCcceEEeeccccccCCccccccccccccchhccc-ccCccccCCcCCccC-chhhhcc-----CCCcEEecC
Q 042791 419 LQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLI-HLKYLNLSELGIERL-PETLCEL-----YNLQKLDIR 491 (761)
Q Consensus 419 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~-~L~~L~l~~~~i~~l-p~~~~~l-----~~L~~L~l~ 491 (761)
.+.++...++|++|+|++|.+... ....+...+..++ +|++|++++|.++.. +..+..+ ++|++|+++
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSI-----STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS 88 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGS-----CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred HHHHHhCCCCceEEEccCCCCChH-----HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc
Confidence 445566666788999987776531 1112225566777 788888888888744 4556554 888888888
Q ss_pred CccCcccccccc----ccc-ccccEeecCCccccccccccCCCCCCCcccCceeecCccCCCCccC-cccccCccCCceE
Q 042791 492 RCRNLRELPAGI----GKL-MNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSNTCR-LESLKNLQLRGKC 565 (761)
Q Consensus 492 ~~~~~~~lp~~~----~~l-~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~-l~~L~~L~l~~~~ 565 (761)
+|......+..+ ..+ ++|++|++++|.+....+..+... +.. ..+|+.|+++
T Consensus 89 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-------------------l~~~~~~L~~L~Ls--- 146 (362)
T 3goz_A 89 GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA-------------------FSNLPASITSLNLR--- 146 (362)
T ss_dssp SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH-------------------HTTSCTTCCEEECT---
T ss_pred CCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH-------------------HHhCCCceeEEEcc---
Confidence 888554444433 333 788888888885433222111000 001 1233333333
Q ss_pred EEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCC-CCCceEEEEeeCCCCCC-c
Q 042791 566 SIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPP-LNVEELWIIFYGGNIFP-K 643 (761)
Q Consensus 566 ~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~p-~ 643 (761)
.|.+.+ .....+...+... ++|+.|++++|.+.... .
T Consensus 147 -------------------------------~N~l~~----------~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 185 (362)
T 3goz_A 147 -------------------------------GNDLGI----------KSSDELIQILAAIPANVNSLNLRGNNLASKNCA 185 (362)
T ss_dssp -------------------------------TSCGGG----------SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH
T ss_pred -------------------------------CCcCCH----------HHHHHHHHHHhcCCccccEeeecCCCCchhhHH
Confidence 332211 0122333333334 48999999999875443 2
Q ss_pred h----hhhh-cCCcEEEeecCCCCCCCCCCCCCCcceEE-eccCcCceEeCccccCCC-----cccccCCccceeecccc
Q 042791 644 W----LTLL-TNLRNLTLASCVNCEHLPPLGKLPLEKLV-IDDLKSVKSVGNEFLGIE-----ENIIAFPKLKYLKIWAT 712 (761)
Q Consensus 644 ~----~~~l-~~L~~L~l~~~~~~~~~~~~~~lpl~~l~-l~~l~~L~~~~~~~~~~~-----~~~~~~~~L~~L~l~~~ 712 (761)
. +..+ ++|++|++++|...+. . ...++-.... ..+++.|++++|.+...+ ..+..+++|+.|++++|
T Consensus 186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~-~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 186 ELAKFLASIPASVTSLDLSANLLGLK-S-YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGS-C-HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHhCCCCCCEEECCCCCCChh-H-HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 3 3344 5999999999962210 0 0001100001 135667777777776633 23356788888888888
Q ss_pred cccc-----------cCCCCCccceEeeecCCCCcC
Q 042791 713 EELE-----------ETTDIPRLSSLTIWYCPKLKV 737 (761)
Q Consensus 713 ~~~~-----------~~~~l~~L~~L~l~~~~~l~~ 737 (761)
.... ..+.+++|+.|++++|+....
T Consensus 264 ~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 6211 155677888888888875443
No 98
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.54 E-value=2.3e-14 Score=142.76 Aligned_cols=174 Identities=20% Similarity=0.125 Sum_probs=135.8
Q ss_pred CCceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEI 452 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 452 (761)
...++.+.+..+.+..++ .+..+++|+.|++++|.+.. +. .+..+++|++|++++|.+.+ ..
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~------~~--~l~~l~~L~~L~L~~n~l~~---------~~ 101 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD------IS--ALKELTNLTYLILTGNQLQS---------LP 101 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC------CG--GGTTCTTCCEEECTTSCCCC---------CC
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC------ch--hhcCCCCCCEEECCCCccCc---------cC
Confidence 456788888888887766 68889999999999988643 11 36789999999999776653 23
Q ss_pred ccchhcccccCccccCCcCCccCchh-hhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCC
Q 042791 453 PENVGKLIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLT 531 (761)
Q Consensus 453 p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 531 (761)
+..+..+++|++|++++|.++.+|.. +..+++|++|++++|......+..+..+++|++|++++|.+....+..++.++
T Consensus 102 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 181 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181 (272)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc
Confidence 34468899999999999999977754 68899999999999974443444468899999999999976655555578899
Q ss_pred CCcccCceeecCccCCCC-ccCcccccCccCCce
Q 042791 532 NLRTLDRFVVGGGVDGSN-TCRLESLKNLQLRGK 564 (761)
Q Consensus 532 ~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 564 (761)
+|+.|++++|.....+.. +..+++|+.|+++++
T Consensus 182 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 182 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 999999998886665543 567888998888875
No 99
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=1.4e-13 Score=143.48 Aligned_cols=296 Identities=11% Similarity=0.081 Sum_probs=170.6
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC-----
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT----- 79 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~----- 79 (761)
.+...+..|+||+++++++.+ +.. +.++|+|++|+|||||++++++ .... .++|+.+...
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~--~~~~---~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGIN--ELNL---PYIYLDLRKFEERNY 71 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHH--HHTC---CEEEEEGGGGTTCSC
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHH--hcCC---CEEEEEchhhccccC
Confidence 345567789999999999999 742 4899999999999999999997 3322 3678887643
Q ss_pred CCHHHHHHHHHHHhcC-------------CC-----C-----------CCCcHHHHHHHHHHHhCCceEEEEEeCCCCCC
Q 042791 80 FDQIRIAKAIIEGLGE-------------SA-----S-----------GLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGD 130 (761)
Q Consensus 80 ~~~~~~~~~i~~~l~~-------------~~-----~-----------~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~ 130 (761)
.+...++..+...+.. .. + .......+.+.+.+... ++++|||||++..+
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELV 150 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhh
Confidence 3445555554443310 00 0 12344555555544333 48999999996632
Q ss_pred c---cCchhHHHhhcCCCCCcEEEEEecchhhhhh----------c-CC-CCeeecCCCChHHHHHHHHHHhhCCCCCCC
Q 042791 131 Y---NKWQPFFRCLKNGLHGSKILVTTRNESVARM----------M-GS-TDSISIKQLAEEECWSLFKQLAFFGCSFED 195 (761)
Q Consensus 131 ~---~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~~----------~-~~-~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~ 195 (761)
. ..+..++..+.....+.++|+|+|....... + +. ...+++.+|+.+|+.+++...+.......
T Consensus 151 ~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~- 229 (357)
T 2fna_A 151 KLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF- 229 (357)
T ss_dssp GCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-
T ss_pred ccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 1 2232333333222236789999987643211 1 11 25789999999999999987542111111
Q ss_pred CCchhHHHHHHHHhcCCCchhHHHHHHHhhCCCCHHHHHHHH-hhhhhcccccccccccchhcccC--CCCCCcchhHHh
Q 042791 196 CEKLEPIGRKIACKCKGLPLAAKVIGNLLRSKSTVKEWQRIL-ESEMWKVQEIGQDLLAPLLLSYN--DLPSNSMVKQCF 272 (761)
Q Consensus 196 ~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~s~~--~l~~~~~~~~~~ 272 (761)
. + ...|++.++|+|+++..++..+....+...|...+ +.....+ ..++.. ..+. .+++ ..+..+
T Consensus 230 -~---~-~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~---~~~~~~~l~~--~~~~~l 296 (357)
T 2fna_A 230 -K---D-YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLI---LKEFEN---FLHGREIARK--RYLNIM 296 (357)
T ss_dssp -C---C-HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---HHHHHH---HHTTCGGGHH--HHHHHH
T ss_pred -C---c-HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHH---HHHHHH---HhhccccccH--HHHHHH
Confidence 1 1 27899999999999999988765433333443221 1100000 001110 1111 3444 677788
Q ss_pred hhhcCCCCCcccCHHHHHHHHH-HcCCcccCCcchHHHHHHHHHHHHHhcCCccccccCCCCCeeEEEE-chHHHHHH
Q 042791 273 SYCTVFPKDCIMNKEKLIDLWM-AQGYLNADEDEEMETIGEEYFNILATRSFFQEFEKNDDDNIRSCKM-HDIVHDFA 348 (761)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~~w~-~~g~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~-hd~i~~~~ 348 (761)
..++. +. +...+..... ..|. . .........++.|.+.+++.... + .+++ |+++++++
T Consensus 297 ~~la~---g~--~~~~l~~~~~~~~g~---~---~~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~l 356 (357)
T 2fna_A 297 RTLSK---CG--KWSDVKRALELEEGI---E---ISDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLAF 356 (357)
T ss_dssp HHHTT---CB--CHHHHHHHHHHHHCS---C---CCHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHHT
T ss_pred HHHHc---CC--CHHHHHHHHHHhcCC---C---CCHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHhh
Confidence 77776 21 3444332110 1120 0 01234567789999999987642 1 2444 67777653
No 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=1.2e-15 Score=157.73 Aligned_cols=154 Identities=18% Similarity=0.141 Sum_probs=110.5
Q ss_pred ceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccccc
Q 042791 375 KVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPE 454 (761)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~ 454 (761)
.++.+.+..+.+...+..+..+++|+.|++++|.+ .....+..+..+++|++|++++|.++. ..|.
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l-----~~~~~~~~~~~~~~L~~L~L~~~~l~~---------~~~~ 136 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI-----EVSTLHGILSQCSKLQNLSLEGLRLSD---------PIVN 136 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEE-----CHHHHHHHHTTBCCCSEEECTTCBCCH---------HHHH
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCc-----CHHHHHHHHhhCCCCCEEeCcCcccCH---------HHHH
Confidence 45666666666666666677889999998888764 233245567888999999999776654 4566
Q ss_pred chhcccccCccccCCc-CCc--cCchhhhccCCCcEEecCCc-cCccc-ccccccccc-cccEeecCCcc--cc-ccccc
Q 042791 455 NVGKLIHLKYLNLSEL-GIE--RLPETLCELYNLQKLDIRRC-RNLRE-LPAGIGKLM-NMRTLLNGETY--AL-KYMPI 525 (761)
Q Consensus 455 ~~~~l~~L~~L~l~~~-~i~--~lp~~~~~l~~L~~L~l~~~-~~~~~-lp~~~~~l~-~L~~L~l~~~~--~~-~~~p~ 525 (761)
.+..+++|++|++++| .++ .+|..+.++++|++|++++| ..... ++..+..++ +|++|++++|. .. ..+|.
T Consensus 137 ~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence 7778889999999998 577 47777888899999999988 53332 667678888 99999998883 22 34455
Q ss_pred cCCCCCCCcccCceeec
Q 042791 526 GISKLTNLRTLDRFVVG 542 (761)
Q Consensus 526 ~l~~l~~L~~L~l~~~~ 542 (761)
.+..+++|+.|++++|.
T Consensus 217 ~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp HHHHCTTCSEEECTTCT
T ss_pred HHhhCCCCCEEeCCCCC
Confidence 55556666666655443
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=2e-14 Score=148.97 Aligned_cols=236 Identities=19% Similarity=0.056 Sum_probs=145.0
Q ss_pred EEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccccc-ch
Q 042791 378 HLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPE-NV 456 (761)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~-~~ 456 (761)
.+.-+.+.+..+|..+ .++++.|+|++|.+ ..+++..|.++++|++|+|++|.+.+ .+|. .|
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i------~~i~~~~f~~l~~L~~L~Ls~N~i~~---------~i~~~~f 75 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKL------RVIQKGAFSGFGDLEKIEISQNDVLE---------VIEADVF 75 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCCC------SEECTTSSTTCTTCCEEEEECCTTCC---------EECTTSB
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCcC------CCcCHHHHcCCCCCCEEECcCCCCCC---------ccChhHh
Confidence 3455566677777665 35788888888876 24445557788888888888766543 3443 35
Q ss_pred hcccccCc-cccCCcCCccCc-hhhhccCCCcEEecCCccCcccccccccccccccEeecCCcccccccccc-CCCC-CC
Q 042791 457 GKLIHLKY-LNLSELGIERLP-ETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIG-ISKL-TN 532 (761)
Q Consensus 457 ~~l~~L~~-L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l-~~ 532 (761)
.++++|+. +.+++|.++.+| ..|..+++|++|++++|......+..+....++..|++.++..+..+|.. +..+ ..
T Consensus 76 ~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~ 155 (350)
T 4ay9_X 76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE 155 (350)
T ss_dssp CSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred hcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchh
Confidence 66766654 555567777664 55778888888888887743333333456667777887766555555543 4444 35
Q ss_pred CcccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccc
Q 042791 533 LRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKN 612 (761)
Q Consensus 533 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 612 (761)
++.|++++|....++.......+|+.|.+.++..++.++. .
T Consensus 156 l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~---------~------------------------------ 196 (350)
T 4ay9_X 156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN---------D------------------------------ 196 (350)
T ss_dssp CEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCT---------T------------------------------
T ss_pred hhhhccccccccCCChhhccccchhHHhhccCCcccCCCH---------H------------------------------
Confidence 7777777777666666555566677776654333332211 0
Q ss_pred hhHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCCCCCCC-cceEEec
Q 042791 613 EKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPPLGKLP-LEKLVID 679 (761)
Q Consensus 613 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-l~~l~l~ 679 (761)
.+..+++|+.|++++|.++.+|.. .+.+|++|.+.++..++.+|.+..++ |+.+.+.
T Consensus 197 --------~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 197 --------VFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp --------TTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred --------HhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 112234555555555555556543 25667777777777677777666666 5555554
No 102
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.51 E-value=3.2e-13 Score=142.59 Aligned_cols=301 Identities=12% Similarity=0.008 Sum_probs=177.9
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc------CCeeEEEEecCCC
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN------FEKVIWVCVSNTF 80 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~------f~~~~~v~~~~~~ 80 (761)
...++.|+||+++++++..++...-. ...++.++|+|++|+||||+|+++++ ..... -..++|+++....
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~ 90 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRE 90 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSC
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCC
Confidence 33458899999999999999865321 23456899999999999999999997 33222 2346788888888
Q ss_pred CHHHHHHHHHHHhcCCCCCC-CcHHHHHHHHHHHh--CCceEEEEEeCCCCCCcc--CchhHHHhhcCC-----CCCcEE
Q 042791 81 DQIRIAKAIIEGLGESASGL-NEFQSLMSRIQSSI--KGKKNFLVLDDVWDGDYN--KWQPFFRCLKNG-----LHGSKI 150 (761)
Q Consensus 81 ~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~~~--~~~~l~~~~~~~-----~~~~~i 150 (761)
+...++..++..++...+.. ....+....+.+.+ .+++.+|||||++..... ..+.+...+... ..+..+
T Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 170 (387)
T 2v1u_A 91 TPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSL 170 (387)
T ss_dssp SHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEE
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEE
Confidence 88899999999987643322 23455566666666 356889999999763222 223333333221 335567
Q ss_pred EEEecchhhhh----hc-CC--CCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcC---CCchh-HHH
Q 042791 151 LVTTRNESVAR----MM-GS--TDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCK---GLPLA-AKV 219 (761)
Q Consensus 151 iiTtr~~~~~~----~~-~~--~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pla-l~~ 219 (761)
|+||+...... .+ .. ...+.+++++.++..+++...+...... .....+..+.+++.++ |.|.. +.+
T Consensus 171 I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~G~~r~~~~~ 248 (387)
T 2v1u_A 171 VGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNP--GVLDPDVVPLCAALAAREHGDARRALDL 248 (387)
T ss_dssp EEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCT--TTBCSSHHHHHHHHHHSSSCCHHHHHHH
T ss_pred EEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccC--CCCCHHHHHHHHHHHHHhccCHHHHHHH
Confidence 88877642211 11 11 1478999999999999999875321011 1122345677888887 99943 333
Q ss_pred HHHHhh-------CCCCHHHHHHHHhhhhhcccccccccccchhcccCCCCCCcchhHHhhhhcC-CCCCcccCHHHHHH
Q 042791 220 IGNLLR-------SKSTVKEWQRILESEMWKVQEIGQDLLAPLLLSYNDLPSNSMVKQCFSYCTV-FPKDCIMNKEKLID 291 (761)
Q Consensus 220 ~~~~l~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ 291 (761)
+..+.. ..-+.+.+..++...... .+..++..++. ..+..+..++. +.....+....+.+
T Consensus 249 l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~----------~~~~~~~~l~~--~~~~~l~a~~~~~~~~~~~~~~~~~~ 316 (387)
T 2v1u_A 249 LRVAGEIAERRREERVRREHVYSARAEIERD----------RVSEVVRTLPL--HAKLVLLSIMMLEDGGRPASTGEIYE 316 (387)
T ss_dssp HHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH----------HHHHHHHSSCH--HHHHHHHHHHHHSSSSCCEEHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc----------hHHHHHHcCCH--HHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 322211 123566666665543211 12234555665 55555554442 22212344443333
Q ss_pred HH--HHcCCcccCCcchHHHHHHHHHHHHHhcCCccccc
Q 042791 292 LW--MAQGYLNADEDEEMETIGEEYFNILATRSFFQEFE 328 (761)
Q Consensus 292 ~w--~~~g~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 328 (761)
.. +++..- ............++.|...+++....
T Consensus 317 ~~~~~~~~~~---~~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 317 RYKELTSTLG---LEHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHHHHTT---CCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhcC---CCCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 21 111110 01112355677899999999998754
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=4.3e-15 Score=154.86 Aligned_cols=254 Identities=10% Similarity=0.020 Sum_probs=139.1
Q ss_pred EeecCCCCC-cccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCC-cceEEeeccccccCCccccccccccccchhc
Q 042791 381 LNFQRGASF-PMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLA-CLRALVISQFYISGSHHEANRIKEIPENVGK 458 (761)
Q Consensus 381 ~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~ 458 (761)
++.+.+... |..+...++|+.|++++|.+.... .......+.+++ +|++|+|++|.+.. ..+..+..
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~l~~---------~~~~~l~~ 73 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIS--TVELIQAFANTPASVTSLNLSGNSLGF---------KNSDELVQ 73 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSC--HHHHHHHHHTCCTTCCEEECCSSCGGG---------SCHHHHHH
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHH--HHHHHHHHHhCCCceeEEECcCCCCCH---------HHHHHHHH
Confidence 344444433 333344455888888888753221 111224567777 88888888777654 22333433
Q ss_pred c-----cccCccccCCcCCccCc-hh----hhcc-CCCcEEecCCccCcccccccc----cc-cccccEeecCCccccc-
Q 042791 459 L-----IHLKYLNLSELGIERLP-ET----LCEL-YNLQKLDIRRCRNLRELPAGI----GK-LMNMRTLLNGETYALK- 521 (761)
Q Consensus 459 l-----~~L~~L~l~~~~i~~lp-~~----~~~l-~~L~~L~l~~~~~~~~lp~~~----~~-l~~L~~L~l~~~~~~~- 521 (761)
+ ++|++|++++|.++..+ .. +..+ ++|++|++++|......+..+ .. .++|++|++++|.+..
T Consensus 74 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 153 (362)
T 3goz_A 74 ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK 153 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred HHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH
Confidence 3 78888888888887443 33 3444 788888888888544333333 23 3588888888886553
Q ss_pred ---cccccCCCCC-CCcccCceeecCccCCC-----CccCc-ccccCccCCceEEEcCCCCCCChhHHhhccccccCCCC
Q 042791 522 ---YMPIGISKLT-NLRTLDRFVVGGGVDGS-----NTCRL-ESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLL 591 (761)
Q Consensus 522 ---~~p~~l~~l~-~L~~L~l~~~~~~~~~~-----~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~ 591 (761)
.++..+..++ +|+.|++++|.....+. .+..+ .+|+.|+++++. +.. .....+.......+++|+
T Consensus 154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~----~~~~~l~~~l~~~~~~L~ 228 (362)
T 3goz_A 154 SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGL----KSYAELAYIFSSIPNHVV 228 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGG----SCHHHHHHHHHHSCTTCC
T ss_pred HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CCh----hHHHHHHHHHhcCCCCce
Confidence 3333344444 77777777776443321 11223 366777766532 211 111111111111234677
Q ss_pred cEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCC--------CchhhhhcCCcEEEeecCC
Q 042791 592 RLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIF--------PKWLTLLTNLRNLTLASCV 660 (761)
Q Consensus 592 ~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--------p~~~~~l~~L~~L~l~~~~ 660 (761)
.|+++.|.+.+. ....+...+..+++|+.|++++|....+ +..+..+++|+.|++++|.
T Consensus 229 ~L~Ls~N~l~~~----------~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 229 SLNLCLNCLHGP----------SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp EEECCSSCCCCC----------CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred EEECcCCCCCcH----------HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 777776664321 2233334445566677777776653222 2233455666666666664
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=1e-13 Score=130.61 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=118.6
Q ss_pred CceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccc
Q 042791 374 VKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIP 453 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp 453 (761)
.+++.+.++.+.+..+| .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+ ..|
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~-------~~-~l~~l~~L~~L~l~~n~l~~---------~~~ 105 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATN-------YN-PISGLSNLERLRIMGKDVTS---------DKI 105 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSC-------CG-GGTTCTTCCEEEEECTTCBG---------GGS
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCc-------ch-hhhcCCCCCEEEeECCccCc---------ccC
Confidence 46788999999888888 78899999999999886422 11 26789999999999877654 356
Q ss_pred cchhcccccCccccCCcCCc-cCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCC
Q 042791 454 ENVGKLIHLKYLNLSELGIE-RLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTN 532 (761)
Q Consensus 454 ~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 532 (761)
..++.+++|++|++++|.++ ..|..+..+++|++|++++|..+..+| .+..+++|++|++++|.+. .++ .+..+++
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~ 182 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPK 182 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSS
T ss_pred hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCC
Confidence 67888999999999999988 477888999999999999988677777 5889999999999998654 344 6777888
Q ss_pred CcccCceeecC
Q 042791 533 LRTLDRFVVGG 543 (761)
Q Consensus 533 L~~L~l~~~~~ 543 (761)
|+.|++.+|..
T Consensus 183 L~~L~l~~N~i 193 (197)
T 4ezg_A 183 LNQLYAFSQTI 193 (197)
T ss_dssp CCEEEECBC--
T ss_pred CCEEEeeCccc
Confidence 88888877653
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=6.1e-14 Score=137.90 Aligned_cols=158 Identities=19% Similarity=0.193 Sum_probs=130.5
Q ss_pred CCceEEEEEeecCCCCCcc-cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPM-SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKE 451 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 451 (761)
...++.+.++.+.+..+++ .+..+++|++|++++|.+.. +++..+..+++|++|++++|.+.. .
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~---------~ 98 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT------LSAGVFDDLTELGTLGLANNQLAS---------L 98 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECTTSCCCC---------C
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc------cCHhHhccCCcCCEEECCCCcccc---------c
Confidence 3578999999999987765 68999999999999998743 233447889999999999877654 2
Q ss_pred cccchhcccccCccccCCcCCccCchh-hhccCCCcEEecCCccCcccccc-cccccccccEeecCCccccccccccCCC
Q 042791 452 IPENVGKLIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRTLLNGETYALKYMPIGISK 529 (761)
Q Consensus 452 lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 529 (761)
.+..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. ..+|. .+..+++|++|++++|.+....+..+..
T Consensus 99 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 177 (251)
T 3m19_A 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhC
Confidence 334578899999999999999988865 68899999999999984 45554 6899999999999999776665667899
Q ss_pred CCCCcccCceeecCccC
Q 042791 530 LTNLRTLDRFVVGGGVD 546 (761)
Q Consensus 530 l~~L~~L~l~~~~~~~~ 546 (761)
+++|+.|++.+|.....
T Consensus 178 l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 178 LGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTCCEEECCSCCBCTT
T ss_pred CCCCCEEEeeCCceeCC
Confidence 99999999998876543
No 106
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.47 E-value=2.8e-12 Score=135.33 Aligned_cols=301 Identities=13% Similarity=0.056 Sum_probs=180.5
Q ss_pred CCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-CCeeEEEEecCCCCHHHHH
Q 042791 8 IDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSNTFDQIRIA 86 (761)
Q Consensus 8 ~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~ 86 (761)
..++.++||+++++++..++.....+..+..+.++|+|++|+||||+|++++. ..... -..++|+.+....+...+.
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~ 91 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAII 91 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHH
Confidence 34478999999999999988753210011234899999999999999999997 44443 2457788888877888899
Q ss_pred HHHHHHhcCCCCC-CCcHHHHHHHHHHHh--CCceEEEEEeCCCCCCccCchhHHHhhcCCC----CCcEEEEEecchhh
Q 042791 87 KAIIEGLGESASG-LNEFQSLMSRIQSSI--KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL----HGSKILVTTRNESV 159 (761)
Q Consensus 87 ~~i~~~l~~~~~~-~~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~----~~~~iiiTtr~~~~ 159 (761)
..++..++...+. ........+.+...+ .+++.+||+||++..+...+..+...+.... .+..+|++|+...+
T Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 92 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 9998888654322 223455555555554 3568899999997764445555555443311 35668888776533
Q ss_pred hhhcC-------CCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhc---------CCCchhHHHHHHH
Q 042791 160 ARMMG-------STDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKC---------KGLPLAAKVIGNL 223 (761)
Q Consensus 160 ~~~~~-------~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plal~~~~~~ 223 (761)
...+. ....+.+.+++.++..+++...+...... .....+....+++.+ +|.|..+..+...
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE--GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT--TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 22211 12369999999999999998876421111 123345678888888 7887554443322
Q ss_pred hh------C--CCCHHHHHHHHhhhhhcccccccccccchhcccCCCCCCcchhHHhhhhcCCC---CCcccCHHHHHHH
Q 042791 224 LR------S--KSTVKEWQRILESEMWKVQEIGQDLLAPLLLSYNDLPSNSMVKQCFSYCTVFP---KDCIMNKEKLIDL 292 (761)
Q Consensus 224 l~------~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 292 (761)
.. + .-+.+....+..... ...+...+..++. ..+..+..++.+. .+..+....+...
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~--~~~~~L~~l~~~~~~~~~~~~~~~~i~~~ 317 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPL--HEKLFLLAIVRSLKISHTPYITFGDAEES 317 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCH--HHHHHHHHHHHHHHHHCSSCEEHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCH--HHHHHHHHHHHHHhhccCCCccHHHHHHH
Confidence 11 1 123344443333211 1112233445555 5666665555433 1113444454443
Q ss_pred HHH----cCCcccCCcchHHHHHHHHHHHHHhcCCcccccc
Q 042791 293 WMA----QGYLNADEDEEMETIGEEYFNILATRSFFQEFEK 329 (761)
Q Consensus 293 w~~----~g~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~ 329 (761)
+.. .|. .. -.......+++.|.+++++.....
T Consensus 318 ~~~~~~~~~~-~~----~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 318 YKIVCEEYGE-RP----RVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHHHHHTTC-CC----CCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHHcCC-CC----CCHHHHHHHHHHHHhCCCeEEeee
Confidence 321 111 11 112446678899999999987654
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.47 E-value=5.1e-14 Score=134.96 Aligned_cols=150 Identities=18% Similarity=0.097 Sum_probs=116.4
Q ss_pred EEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchh
Q 042791 378 HLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVG 457 (761)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~ 457 (761)
.++...+.+..+|..+. ++|+.|++++|.+. .+++..|..+++|++|+|++|.+.. ..|..|.
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~------~i~~~~~~~l~~L~~L~Ls~N~i~~---------~~~~~~~ 77 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIK------VIPPGAFSPYKKLRRIDLSNNQISE---------LAPDAFQ 77 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCC------EECTTSSTTCTTCCEEECCSSCCCE---------ECTTTTT
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCC------CcCHhHhhCCCCCCEEECCCCcCCC---------cCHHHhh
Confidence 45666677778886654 68999999888763 3334447788999999999776654 3467788
Q ss_pred cccccCccccCCcCCccCchh-hhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCccc
Q 042791 458 KLIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTL 536 (761)
Q Consensus 458 ~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 536 (761)
.+++|++|++++|.++.+|.. |..+++|++|+|++|......|..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 899999999999999988865 5789999999999988666567778899999999999997665555567888888888
Q ss_pred CceeecCc
Q 042791 537 DRFVVGGG 544 (761)
Q Consensus 537 ~l~~~~~~ 544 (761)
++.+|.+.
T Consensus 158 ~L~~N~~~ 165 (220)
T 2v9t_B 158 HLAQNPFI 165 (220)
T ss_dssp ECCSSCEE
T ss_pred EeCCCCcC
Confidence 88777643
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=1.5e-13 Score=137.96 Aligned_cols=163 Identities=18% Similarity=0.195 Sum_probs=98.7
Q ss_pred CceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccc
Q 042791 374 VKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIP 453 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp 453 (761)
.+++.+.++.+.+..++ .+..+++|+.|++++|.+.. +++ +.++++|++|++++|.+. .+|
T Consensus 46 ~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~------~~~--l~~l~~L~~L~l~~n~l~----------~~~ 106 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD------IKP--LANLKNLGWLFLDENKVK----------DLS 106 (291)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG--GTTCTTCCEEECCSSCCC----------CGG
T ss_pred CcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCC------Ccc--cccCCCCCEEECCCCcCC----------CCh
Confidence 35566677766666665 46677777777777766532 122 566777777777755443 233
Q ss_pred cchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCC
Q 042791 454 ENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNL 533 (761)
Q Consensus 454 ~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 533 (761)
. +..+++|++|++++|.++.+ ..+..+++|++|++++|. +..+ ..+..+++|++|++++|.+... +. +..+++|
T Consensus 107 ~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L 180 (291)
T 1h6t_A 107 S-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKL 180 (291)
T ss_dssp G-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTC
T ss_pred h-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccccc-hh-hcCCCcc
Confidence 2 66677777777777777665 356677777777777776 3334 3467777777777777754333 22 6666666
Q ss_pred cccCceeecCccCCCCccCcccccCccCC
Q 042791 534 RTLDRFVVGGGVDGSNTCRLESLKNLQLR 562 (761)
Q Consensus 534 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 562 (761)
+.|++++|.....+. +..+++|+.|+++
T Consensus 181 ~~L~L~~N~i~~l~~-l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 181 QNLYLSKNHISDLRA-LAGLKNLDVLELF 208 (291)
T ss_dssp CEEECCSSCCCBCGG-GTTCTTCSEEEEE
T ss_pred CEEECCCCcCCCChh-hccCCCCCEEECc
Confidence 666666555443321 3344444444444
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=5.8e-14 Score=132.28 Aligned_cols=149 Identities=14% Similarity=0.128 Sum_probs=107.2
Q ss_pred cCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCc
Q 042791 394 FEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIE 473 (761)
Q Consensus 394 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~ 473 (761)
..+++|+.|+++++.+.. ++ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.++
T Consensus 41 ~~l~~L~~L~l~~n~i~~------l~--~l~~l~~L~~L~l~~n~~~----------~~~-~l~~l~~L~~L~l~~n~l~ 101 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD------LT--GIEYAHNIKDLTINNIHAT----------NYN-PISGLSNLERLRIMGKDVT 101 (197)
T ss_dssp HHHHTCCEEEEESSCCSC------CT--TGGGCTTCSEEEEESCCCS----------CCG-GGTTCTTCCEEEEECTTCB
T ss_pred hhcCCccEEeccCCCccC------hH--HHhcCCCCCEEEccCCCCC----------cch-hhhcCCCCCEEEeECCccC
Confidence 567888888888887642 12 1677888888888876432 233 5777888888888888887
Q ss_pred c-CchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcccCceeecCccCCCCccC
Q 042791 474 R-LPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSNTCR 552 (761)
Q Consensus 474 ~-lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 552 (761)
. .|..++.+++|++|++++|......|..+..+++|++|++++|.....+| .+..+++|+.|++++|.....+ .+..
T Consensus 102 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~ 179 (197)
T 4ezg_A 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIED 179 (197)
T ss_dssp GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGG
T ss_pred cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-Hhcc
Confidence 4 67778888888888888888666677778888888888888886556665 5777777777777766655433 3445
Q ss_pred cccccCccCCc
Q 042791 553 LESLKNLQLRG 563 (761)
Q Consensus 553 l~~L~~L~l~~ 563 (761)
+++|+.|++++
T Consensus 180 l~~L~~L~l~~ 190 (197)
T 4ezg_A 180 FPKLNQLYAFS 190 (197)
T ss_dssp CSSCCEEEECB
T ss_pred CCCCCEEEeeC
Confidence 55555555553
No 110
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=9.9e-13 Score=138.51 Aligned_cols=294 Identities=12% Similarity=0.027 Sum_probs=177.6
Q ss_pred CCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc--------CCeeEEEEecCCC-
Q 042791 10 EGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN--------FEKVIWVCVSNTF- 80 (761)
Q Consensus 10 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~--------f~~~~~v~~~~~~- 80 (761)
++.|+||+++++++.+++..... +..++.++|+|++|+||||+|+++++ ..... ...++|+++....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCC
Confidence 47899999999999988765321 23457899999999999999999998 33222 3457788877766
Q ss_pred CHHHHHHHHHHHhcCCCC--CCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccC-chhHHHhhcCCCCCcEEEEEecch
Q 042791 81 DQIRIAKAIIEGLGESAS--GLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNK-WQPFFRCLKNGLHGSKILVTTRNE 157 (761)
Q Consensus 81 ~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~-~~~l~~~~~~~~~~~~iiiTtr~~ 157 (761)
+...++..++..+..... ...........+.+.+...+.+|||||++...... .+.+...+.....+..+|+||+..
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~ 174 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDI 174 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSST
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCC
Confidence 788888888888733221 12234556677777777666699999996632222 233022232222567888888865
Q ss_pred hh----hhhc--CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcC---CCch-hHHHHHHHh--h
Q 042791 158 SV----ARMM--GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCK---GLPL-AAKVIGNLL--R 225 (761)
Q Consensus 158 ~~----~~~~--~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~~~~l--~ 225 (761)
.. ...+ .....+++++++.++..+++...+...... .....+..+.+++.++ |.|. ++.++..+. .
T Consensus 175 ~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 175 NVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIK--GTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCT--TSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred chHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhccc--CCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 32 1111 112389999999999999999876421111 1223455677888887 8887 444443222 2
Q ss_pred ---CCCCHHHHHHHHhhhhhcccccccccccchhcccCCCCCCcchhHHhhhhcCCCCCcccCHHHHHH--HHHHcCCcc
Q 042791 226 ---SKSTVKEWQRILESEMWKVQEIGQDLLAPLLLSYNDLPSNSMVKQCFSYCTVFPKDCIMNKEKLID--LWMAQGYLN 300 (761)
Q Consensus 226 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~w~~~g~~~ 300 (761)
..-+.+.+..+++.... ..+..++..++. ..+..+..++. .... ..+.+ ..+++.+-
T Consensus 253 ~~~~~i~~~~v~~~~~~~~~----------~~~~~~~~~l~~--~~~~~l~al~~-~~~~----~~~~~~~~~~~~~~g- 314 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYEQ----------ERLIEAVKALPF--HYKLALRSLIE-SEDV----MSAHKMYTDLCNKFK- 314 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHHH----------HHHHHHHHSSCH--HHHHHHHHHHT-CCBH----HHHHHHHHHHHHHTT-
T ss_pred cCCCccCHHHHHHHHHHHhc----------chHHHHHHcCCH--HHHHHHHHHHH-hccc----ChHHHHHHHHHHHcC-
Confidence 22456777776654321 123344556665 66666666665 1110 11111 11222110
Q ss_pred cCCcchHHHHHHHHHHHHHhcCCcccccc
Q 042791 301 ADEDEEMETIGEEYFNILATRSFFQEFEK 329 (761)
Q Consensus 301 ~~~~~~~~~~~~~~~~~L~~~sll~~~~~ 329 (761)
. ..........++..|.+++++.....
T Consensus 315 ~--~~~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 315 Q--KPLSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp C--CCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred C--CCCCHHHHHHHHHHHHhCCCEEEEec
Confidence 0 11123456678899999999987543
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=1.7e-13 Score=131.32 Aligned_cols=151 Identities=17% Similarity=0.096 Sum_probs=116.6
Q ss_pred EEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchh
Q 042791 378 HLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVG 457 (761)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~ 457 (761)
.+.++.+.+..+|..+. +.++.|++++|.+.... +..+|..+++|++|+|++|.+.+ ..+..+.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~-----~~~~~~~l~~L~~L~L~~N~i~~---------i~~~~~~ 78 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLE-----ATGIFKKLPQLRKINFSNNKITD---------IEEGAFE 78 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEEC-----CCCCGGGCTTCCEEECCSSCCCE---------ECTTTTT
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccC-----chhhhccCCCCCEEECCCCcCCE---------ECHHHhC
Confidence 67778888888887653 45689999888763211 22336788999999999766653 2234688
Q ss_pred cccccCccccCCcCCccCch-hhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCccc
Q 042791 458 KLIHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTL 536 (761)
Q Consensus 458 ~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 536 (761)
.+++|++|++++|.++.+|. .+..+++|++|+|++|......|..+..+++|++|++++|.+....|..+..+++|+.|
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 89999999999999987765 47889999999999998666667788899999999999997776667788888888888
Q ss_pred CceeecCc
Q 042791 537 DRFVVGGG 544 (761)
Q Consensus 537 ~l~~~~~~ 544 (761)
++.+|.+.
T Consensus 159 ~L~~N~l~ 166 (220)
T 2v70_A 159 NLLANPFN 166 (220)
T ss_dssp ECCSCCEE
T ss_pred EecCcCCc
Confidence 88777644
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=3.2e-13 Score=147.07 Aligned_cols=186 Identities=17% Similarity=0.173 Sum_probs=103.0
Q ss_pred cceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccc
Q 042791 428 CLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLM 507 (761)
Q Consensus 428 ~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 507 (761)
+|+.|++++|.++ .+|..+ +++|++|++++|.++.+| ..+++|++|++++|. +..+|. +..
T Consensus 60 ~L~~L~Ls~n~L~----------~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~-- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLS----------SLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA-- 120 (571)
T ss_dssp TCSEEECCSSCCS----------CCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--
T ss_pred CccEEEeCCCCCC----------ccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--
Confidence 6777777754433 355544 256777777777777776 446677777777766 334665 443
Q ss_pred cccEeecCCccccccccccCCCCCCCcccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhcccccc
Q 042791 508 NMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNK 587 (761)
Q Consensus 508 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~ 587 (761)
+|++|++++|.+.. +|. .+++|+.|++++|.....+. .
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~----------------------------------- 158 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPE---L----------------------------------- 158 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---C-----------------------------------
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCC---c-----------------------------------
Confidence 67777777764333 443 34445555444433222211 1
Q ss_pred CCCCcEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCCCCCCCC
Q 042791 588 KNLLRLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVNCEHLPP 667 (761)
Q Consensus 588 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~ 667 (761)
+++|+.|++++|.+..+|. +. ++|+.|+|++|. ++.+|.
T Consensus 159 -------------------------------------l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~ 197 (571)
T 3cvr_A 159 -------------------------------------PTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA 197 (571)
T ss_dssp -------------------------------------CTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC
T ss_pred -------------------------------------CCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh
Confidence 2234445555555444555 33 677777777764 334433
Q ss_pred CCCCCcceEEeccCcCceEeCccccCCCcccccCCccceeeccccccccc
Q 042791 668 LGKLPLEKLVIDDLKSVKSVGNEFLGIEENIIAFPKLKYLKIWATEELEE 717 (761)
Q Consensus 668 ~~~lpl~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 717 (761)
+.. .+ ......++.|++.+|.++.+|..+..+++|+.|+|++|.....
T Consensus 198 ~~~-~L-~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 198 VPV-RN-HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred HHH-hh-hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 110 00 0001112666677777777777666788888888888766544
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=2.3e-13 Score=131.35 Aligned_cols=148 Identities=21% Similarity=0.263 Sum_probs=111.3
Q ss_pred EEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccccc-ch
Q 042791 378 HLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPE-NV 456 (761)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~-~~ 456 (761)
.++...+.+..+|..+. ++|+.|++++|.+.. +.+..|..+++|++|+|++|.+. .+|. .+
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~L~~N~l~----------~i~~~~~ 84 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITK------LEPGVFDSLINLKELYLGSNQLG----------ALPVGVF 84 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCC----------CCCTTTT
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCc------cCHHHhhCccCCcEEECCCCCCC----------CcChhhc
Confidence 45666667777886654 789999998887643 22334678889999999976654 4543 45
Q ss_pred hcccccCccccCCcCCccCchh-hhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcc
Q 042791 457 GKLIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRT 535 (761)
Q Consensus 457 ~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 535 (761)
..+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 7888999999999998887754 6788999999999887 5588888888999999999988655444445777888888
Q ss_pred cCceeecCc
Q 042791 536 LDRFVVGGG 544 (761)
Q Consensus 536 L~l~~~~~~ 544 (761)
|++.+|...
T Consensus 164 L~l~~N~~~ 172 (229)
T 3e6j_A 164 AYLFGNPWD 172 (229)
T ss_dssp EECTTSCBC
T ss_pred EEeeCCCcc
Confidence 887777644
No 114
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.41 E-value=5.6e-12 Score=123.85 Aligned_cols=200 Identities=14% Similarity=0.117 Sum_probs=122.5
Q ss_pred CCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHH
Q 042791 8 IDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAK 87 (761)
Q Consensus 8 ~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (761)
....+++||+.+++.+..++.... .++.++|+|++|+||||+|+++++ .....+... ...+.. .... .
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~--~~~~~~~~~-~~~~~~---~~~~-~ 87 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAK--GLNCETGIT-ATPCGV---CDNC-R 87 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHH--HHHCTTCSC-SSCCSC---SHHH-H
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH--HhcCCCCCC-CCCCcc---cHHH-H
Confidence 334569999999999999997532 245889999999999999999997 333222110 000000 0000 0
Q ss_pred HHHHHhcC-----CCCCCCcHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecch
Q 042791 88 AIIEGLGE-----SASGLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE 157 (761)
Q Consensus 88 ~i~~~l~~-----~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~ 157 (761)
.+...... ........+. ...+.+.+ .+++.+||+||++..+...+..+...+.....+.++|+||+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~ 166 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 166 (250)
T ss_dssp HHHTTCCSSEEEEETTCGGGHHH-HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCG
T ss_pred HHhccCCcceEEecCcccccHHH-HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 00000000 0000011111 11122221 3467899999997766666777777776655677888888764
Q ss_pred h-hhhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHHh
Q 042791 158 S-VARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL 224 (761)
Q Consensus 158 ~-~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 224 (761)
. +... ......+++++++.++..+++...+..... ....+..+.|++.++|+|..+..+...+
T Consensus 167 ~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 167 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3 2221 123468999999999999999987754221 2234567889999999999888776544
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=9.6e-13 Score=143.33 Aligned_cols=183 Identities=17% Similarity=0.074 Sum_probs=110.2
Q ss_pred ceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccccc
Q 042791 375 KVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPE 454 (761)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~ 454 (761)
+++.++++.+.+..+|..+ +++|+.|++++|.+. .++ ..+++|++|++++|.++ .+|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~------~ip----~~l~~L~~L~Ls~N~l~----------~ip~ 117 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI------SLP----ELPASLEYLDACDNRLS----------TLPE 117 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS------CCC----CCCTTCCEEECCSSCCS----------CCCC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc------ccc----cccCCCCEEEccCCCCC----------Ccch
Confidence 4666777777777777655 366777777777653 122 23567777777755443 3554
Q ss_pred chhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCc
Q 042791 455 NVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLR 534 (761)
Q Consensus 455 ~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 534 (761)
+.. +|++|++++|.++.+|. .+++|+.|++++|. +..+|. .+++|++|++++|.+.. +|. +. ++|+
T Consensus 118 -l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~ 183 (571)
T 3cvr_A 118 -LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLE 183 (571)
T ss_dssp -CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCC
T ss_pred -hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCC
Confidence 433 67777777777777766 56777777777776 344655 45677777777774333 554 43 5555
Q ss_pred ccCceeecCccCCCCccCcccccCccCCceEEEcCCCCCCChhHHhhccccccCCCCcEEEEeecccCCCCCcCcccchh
Q 042791 535 TLDRFVVGGGVDGSNTCRLESLKNLQLRGKCSIEGLSNVSHVDEAERLQLYNKKNLLRLHLVFGRVVDGEGEEGRRKNEK 614 (761)
Q Consensus 535 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 614 (761)
.|++++|.....+. +.. +|
T Consensus 184 ~L~Ls~N~L~~lp~-~~~--~L---------------------------------------------------------- 202 (571)
T 3cvr_A 184 ALDVSTNLLESLPA-VPV--RN---------------------------------------------------------- 202 (571)
T ss_dssp EEECCSSCCSSCCC-CC---------------------------------------------------------------
T ss_pred EEECcCCCCCchhh-HHH--hh----------------------------------------------------------
Confidence 55555444332221 110 00
Q ss_pred HHHHHhhCCCCCCCceEEEEeeCCCCCCchhhhhcCCcEEEeecCCC
Q 042791 615 DKQLLEALQPPLNVEELWIIFYGGNIFPKWLTLLTNLRNLTLASCVN 661 (761)
Q Consensus 615 ~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~ 661 (761)
...++.|+.|++++|.+..+|..+..+++|+.|+|++|..
T Consensus 203 -------~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 203 -------HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred -------hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 0012335667777777777888888888888888888863
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.40 E-value=4.6e-13 Score=147.64 Aligned_cols=164 Identities=19% Similarity=0.227 Sum_probs=80.1
Q ss_pred ceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccccc
Q 042791 375 KVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPE 454 (761)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~ 454 (761)
.++.|.++.+.+..++ .+..+++|+.|+|++|.+.. +++ +..+++|+.|+|++|.+. .+|
T Consensus 44 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~------~~~--l~~l~~L~~L~Ls~N~l~----------~l~- 103 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD------IKP--LTNLKNLGWLFLDENKIK----------DLS- 103 (605)
T ss_dssp TCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCC------CGG--GGGCTTCCEEECCSSCCC----------CCT-
T ss_pred CCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCC------Chh--hccCCCCCEEECcCCCCC----------CCh-
Confidence 3444444555554444 45555555555555554321 111 445555555555544332 222
Q ss_pred chhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCc
Q 042791 455 NVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLR 534 (761)
Q Consensus 455 ~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 534 (761)
.+..+++|++|++++|.++.+| .+..+++|+.|+|++|. +..+ ..+..+++|+.|+|++|.+....| +..+++|+
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~ 178 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 178 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCC
Confidence 3445555555555555555442 35555555555555554 2223 235555555555555554333222 55555555
Q ss_pred ccCceeecCccCCCCccCcccccCccCCce
Q 042791 535 TLDRFVVGGGVDGSNTCRLESLKNLQLRGK 564 (761)
Q Consensus 535 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 564 (761)
.|++++|.....+ .+..+++|+.|++++|
T Consensus 179 ~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 179 NLYLSKNHISDLR-ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp EEECCSSCCCBCG-GGTTCTTCSEEECCSE
T ss_pred EEECcCCCCCCCh-HHccCCCCCEEEccCC
Confidence 5555555444332 2444555555555543
No 117
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=7.4e-13 Score=132.97 Aligned_cols=148 Identities=20% Similarity=0.243 Sum_probs=110.2
Q ss_pred cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcC
Q 042791 392 SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELG 471 (761)
Q Consensus 392 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~ 471 (761)
....+++|+.|+++++.+..- + . +..+++|++|++++|.+. .++. +..+++|++|++++|.
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~------~-~-~~~l~~L~~L~L~~n~l~----------~~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSV------Q-G-IQYLPNVTKLFLNGNKLT----------DIKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCC------T-T-GGGCTTCCEEECCSSCCC----------CCGG-GTTCTTCCEEECCSSC
T ss_pred chhhcCcccEEEccCCCcccC------h-h-HhcCCCCCEEEccCCccC----------CCcc-cccCCCCCEEECCCCc
Confidence 345688899999988876432 1 1 577899999999976654 3544 7788999999999999
Q ss_pred CccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcccCceeecCccCCCCcc
Q 042791 472 IERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSNTC 551 (761)
Q Consensus 472 i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~ 551 (761)
++.+|. +..+++|++|++++|. +..++ .+..+++|++|++++|.+.. + ..+..+++|+.|++++|.....+. +.
T Consensus 102 l~~~~~-l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~-l~ 175 (291)
T 1h6t_A 102 VKDLSS-LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LA 175 (291)
T ss_dssp CCCGGG-GTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GT
T ss_pred CCCChh-hccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh-hc
Confidence 888764 8888999999999987 44454 58889999999999886544 3 457778888888887777555444 56
Q ss_pred CcccccCccCCce
Q 042791 552 RLESLKNLQLRGK 564 (761)
Q Consensus 552 ~l~~L~~L~l~~~ 564 (761)
.+++|+.|+++++
T Consensus 176 ~l~~L~~L~L~~N 188 (291)
T 1h6t_A 176 GLTKLQNLYLSKN 188 (291)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCccCEEECCCC
Confidence 6667777777653
No 118
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=1.8e-12 Score=136.80 Aligned_cols=302 Identities=13% Similarity=0.087 Sum_probs=172.3
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc---CCeeEEEEecCCCCH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN---FEKVIWVCVSNTFDQ 82 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~---f~~~~~v~~~~~~~~ 82 (761)
+...++.|+||+++++.+.+++..... ....+.++|+|++|+||||+|+++++ ..... -..++|+.+....+.
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~ 90 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTP 90 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCH
Confidence 334457899999999999998875321 23456899999999999999999998 44443 235778887766677
Q ss_pred HHHHHHHHHHhcCCCCC-CCcHHHHHHHHHHHhC--CceEEEEEeCCCCCC----ccCchhHHHhhcC-CCCCcEEEEEe
Q 042791 83 IRIAKAIIEGLGESASG-LNEFQSLMSRIQSSIK--GKKNFLVLDDVWDGD----YNKWQPFFRCLKN-GLHGSKILVTT 154 (761)
Q Consensus 83 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~--~~~~LlvlDd~~~~~----~~~~~~l~~~~~~-~~~~~~iiiTt 154 (761)
..++..++..++...+. .....+..+.+.+.+. +++.+||+||++... ...+..+...+.. ...+..+|+||
T Consensus 91 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~ 170 (386)
T 2qby_A 91 YRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGIT 170 (386)
T ss_dssp HHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEE
Confidence 78888887777543322 1234455555555553 458999999996521 2223333333322 22345678888
Q ss_pred cchhhhhhcC-----C--CCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcC---CCchhH-HHHHHH
Q 042791 155 RNESVARMMG-----S--TDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCK---GLPLAA-KVIGNL 223 (761)
Q Consensus 155 r~~~~~~~~~-----~--~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal-~~~~~~ 223 (761)
+.......+. . ...+++++++.++..+++...+..... ......+..+.+++.++ |.|..+ .++..+
T Consensus 171 ~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a 248 (386)
T 2qby_A 171 NDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVS 248 (386)
T ss_dssp SCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7654322211 1 147999999999999999986532111 11233456777888787 999844 333222
Q ss_pred hh-----C--CCCHHHHHHHHhhhhhcccccccccccchhcccCCCCCCcchhHHhhhhcCCCC-C-cccCHHHHHHHH-
Q 042791 224 LR-----S--KSTVKEWQRILESEMWKVQEIGQDLLAPLLLSYNDLPSNSMVKQCFSYCTVFPK-D-CIMNKEKLIDLW- 293 (761)
Q Consensus 224 l~-----~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~l~~~w- 293 (761)
.. + .-+.+.+..++...... .+...+..++. ..+..+..++...+ + ..+....+.+..
T Consensus 249 ~~~a~~~~~~~i~~~~v~~a~~~~~~~----------~~~~~~~~l~~--~~~~il~ai~~~~~~g~~~~~~~~l~~~~~ 316 (386)
T 2qby_A 249 GEIAERMKDTKVKEEYVYMAKEEIERD----------RVRDIILTLPF--HSKLVLMAVVSISSEENVVSTTGAVYETYL 316 (386)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHHHH----------HHHHHHHTSCH--HHHHHHHHHHHHC-----CEEHHHHHHHHH
T ss_pred HHHHHhcCCCccCHHHHHHHHHHHhhc----------hHHHHHHcCCH--HHHHHHHHHHHHHhcCCCceeHHHHHHHHH
Confidence 11 1 23456666555432211 22234445554 55555555553211 1 122333332211
Q ss_pred -HHcCCcccCCcchHHHHHHHHHHHHHhcCCccccc
Q 042791 294 -MAQGYLNADEDEEMETIGEEYFNILATRSFFQEFE 328 (761)
Q Consensus 294 -~~~g~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 328 (761)
+++.. .. . .-.......+++.|.+.+++....
T Consensus 317 ~~~~~~-g~-~-~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 317 NICKKL-GV-E-AVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHHHHH-TC-C-CCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHhc-CC-C-CCCHHHHHHHHHHHHhCCCEEEEe
Confidence 11110 00 0 011234566788899999997643
No 119
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.38 E-value=6e-12 Score=121.56 Aligned_cols=188 Identities=12% Similarity=0.015 Sum_probs=121.9
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-C-CeeEEEEecCCCCHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-F-EKVIWVCVSNTFDQI 83 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f-~~~~~v~~~~~~~~~ 83 (761)
++...++++||++.++.+.+++.... .+.++|+|++|+|||++|+++++ ..... + ..++.+.........
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~ 83 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGID 83 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccChH
Confidence 44555779999999999999997532 33489999999999999999997 33222 2 223344444433333
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchh-hhhh
Q 042791 84 RIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNES-VARM 162 (761)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~-~~~~ 162 (761)
.+...+........ ....++.+||+||++.........+...+.....+.++|+||+... +...
T Consensus 84 ~~~~~~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~ 148 (226)
T 2chg_A 84 VVRHKIKEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148 (226)
T ss_dssp HHHHHHHHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHH
Confidence 32222221111100 0125688999999977655556667766666555678888887643 2211
Q ss_pred -cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 163 -MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 163 -~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
......+++.+++.++..+++...+..... ....+....+++.++|+|..+..+
T Consensus 149 l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 149 IQSRCAVFRFKPVPKEAMKKRLLEICEKEGV----KITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhCceeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 122347999999999999999987643221 123456788999999999865444
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=9.6e-13 Score=149.09 Aligned_cols=158 Identities=20% Similarity=0.194 Sum_probs=91.0
Q ss_pred CCceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEI 452 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 452 (761)
...++++.+..+.+...+..+.....|+.+.+.......+.. .+++..+..++.|+.|+|++|.+ ..+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l----------~~l 239 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQI----------FNI 239 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCC----------SCC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCC----------CCC
Confidence 345777777777777666665555555555554433322222 23556678889999999996554 357
Q ss_pred ccchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCC
Q 042791 453 PENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTN 532 (761)
Q Consensus 453 p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 532 (761)
|..+..+++|++|+|++|.++.+|..|+++++|++|+|++|. +..+|..+..|++|++|+|++|.+ ..+|..++.+++
T Consensus 240 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~ 317 (727)
T 4b8c_D 240 SANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCN 317 (727)
T ss_dssp CGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTT
T ss_pred ChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCC-CccChhhhcCCC
Confidence 777778899999999999988899889999999999999988 448888889999999999998854 578888889999
Q ss_pred CcccCceeecCc
Q 042791 533 LRTLDRFVVGGG 544 (761)
Q Consensus 533 L~~L~l~~~~~~ 544 (761)
|+.|++++|...
T Consensus 318 L~~L~L~~N~l~ 329 (727)
T 4b8c_D 318 LQFLGVEGNPLE 329 (727)
T ss_dssp CCCEECTTSCCC
T ss_pred ccEEeCCCCccC
Confidence 999998887644
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=9.4e-13 Score=125.30 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=92.9
Q ss_pred EEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccccc-ch
Q 042791 378 HLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPE-NV 456 (761)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~-~~ 456 (761)
.+....+....+|..+ .++|+.|++++|.+. .+++..+..+++|++|++++|.+. .+|. .+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~ 72 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLK------SLPNGVFDELTSLTQLYLGGNKLQ----------SLPNGVF 72 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCC------CCCTTTTTTCTTCSEEECCSSCCC----------CCCTTTT
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccC------cCChhhhcccccCcEEECCCCccC----------ccChhhc
Confidence 3444455555666544 357777877777653 223333567777888888765544 3433 35
Q ss_pred hcccccCccccCCcCCccCchh-hhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcc
Q 042791 457 GKLIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRT 535 (761)
Q Consensus 457 ~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 535 (761)
..+++|++|++++|.++.+|.. +..+++|++|++++|......+..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 6777788888888877766654 577778888888777643333334577778888888777554433334666777777
Q ss_pred cCceeec
Q 042791 536 LDRFVVG 542 (761)
Q Consensus 536 L~l~~~~ 542 (761)
|++.+|.
T Consensus 153 L~l~~N~ 159 (208)
T 2o6s_A 153 IWLHDNP 159 (208)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 7766654
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=1.1e-12 Score=124.75 Aligned_cols=156 Identities=20% Similarity=0.238 Sum_probs=121.7
Q ss_pred CCceEEEEEeecCCCCCccc-ccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPMS-FFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKE 451 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 451 (761)
..+++.++++.+.+..++.. +..+++|++|++++|.+. .+++..|..+++|++|++++|.+. .
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~----------~ 90 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ------SLPNGVFNKLTSLTYLNLSTNQLQ----------S 90 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCCC----------C
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC------ccChhhcCCCCCcCEEECCCCcCC----------c
Confidence 45789999999999888764 689999999999999864 233444788999999999977665 3
Q ss_pred ccc-chhcccccCccccCCcCCccCchh-hhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCC
Q 042791 452 IPE-NVGKLIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISK 529 (761)
Q Consensus 452 lp~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 529 (761)
+|. .+..+++|++|++++|.++.+|.. +..+++|++|++++|......+..+..+++|++|++++|... ..
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~ 163 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CT 163 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CC
T ss_pred cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cC
Confidence 443 468899999999999999988765 789999999999999854433444789999999999999543 45
Q ss_pred CCCCcccCceeecCc-cCCCCcc
Q 042791 530 LTNLRTLDRFVVGGG-VDGSNTC 551 (761)
Q Consensus 530 l~~L~~L~l~~~~~~-~~~~~~~ 551 (761)
+++|+.|+++.+... ..+..++
T Consensus 164 ~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 164 CPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp TTTTHHHHHHHHHCTTTBBCTTS
T ss_pred CCCHHHHHHHHHhCCceeeccCc
Confidence 667888887766533 3343333
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=2.1e-12 Score=118.12 Aligned_cols=86 Identities=26% Similarity=0.207 Sum_probs=40.0
Q ss_pred hhcccccCccccCCcCCcc-CchhhhccCCCcEEecCCccCccccc--ccccccccccEeecCCccccccccc----cCC
Q 042791 456 VGKLIHLKYLNLSELGIER-LPETLCELYNLQKLDIRRCRNLRELP--AGIGKLMNMRTLLNGETYALKYMPI----GIS 528 (761)
Q Consensus 456 ~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~----~l~ 528 (761)
+..+++|++|++++|.++. +|..+.++++|++|++++|. +..+| ..+..+++|++|++++|.+. .+|. .+.
T Consensus 67 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~ 144 (168)
T 2ell_A 67 LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFK 144 (168)
T ss_dssp CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHT
T ss_pred hccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHH
Confidence 3444555555555555443 44444445555555555544 23322 33445555555555555332 2222 344
Q ss_pred CCCCCcccCceeecC
Q 042791 529 KLTNLRTLDRFVVGG 543 (761)
Q Consensus 529 ~l~~L~~L~l~~~~~ 543 (761)
.+++|+.|++..+..
T Consensus 145 ~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 145 LLPQLTYLDGYDRED 159 (168)
T ss_dssp TCSSCCEETTEETTS
T ss_pred hCccCcEecCCCCCh
Confidence 555555555554443
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=2.4e-12 Score=124.25 Aligned_cols=133 Identities=18% Similarity=0.221 Sum_probs=111.7
Q ss_pred CCceEEEEEeecCCCCC-cccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccc
Q 042791 373 GVKVRHLGLNFQRGASF-PMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKE 451 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 451 (761)
...++.|.++.+.+..+ |..+..+++|+.|++++|.+. .++...|..+++|++|+|++|.+..
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~------~i~~~~~~~l~~L~~L~Ls~N~l~~---------- 102 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG------ALPVGVFDSLTQLTVLDLGTNQLTV---------- 102 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCCCC----------
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC------CcChhhcccCCCcCEEECCCCcCCc----------
Confidence 46899999999999887 567899999999999999873 3344457889999999999776653
Q ss_pred ccc-chhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCccccc-ccccccccccEeecCCcccccc
Q 042791 452 IPE-NVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELP-AGIGKLMNMRTLLNGETYALKY 522 (761)
Q Consensus 452 lp~-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~ 522 (761)
+|. .+..+++|++|++++|.++.+|..+..+++|++|++++|. +..+| ..+..+++|+.|++++|.....
T Consensus 103 l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 443 4688999999999999999999999999999999999998 44555 5578999999999999975443
No 125
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.32 E-value=1.6e-12 Score=143.37 Aligned_cols=59 Identities=25% Similarity=0.424 Sum_probs=27.2
Q ss_pred hhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCc
Q 042791 456 VGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGET 517 (761)
Q Consensus 456 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 517 (761)
+..+++|++|+|++|.++.+| .+..+++|+.|+|++|. +..++ .+..+++|+.|+|++|
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNN 141 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSS
T ss_pred hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCC
Confidence 444445555555555444433 34444555555555444 22222 2444445555555444
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=5.2e-12 Score=115.48 Aligned_cols=133 Identities=25% Similarity=0.225 Sum_probs=106.2
Q ss_pred CCceEEEEEeecCCC--CCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccc
Q 042791 373 GVKVRHLGLNFQRGA--SFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIK 450 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 450 (761)
...++.+.++.+.+. .+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~N~l~~--------- 85 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--------SNLPKLPKLKKLELSENRIFG--------- 85 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--------SSCCCCSSCCEEEEESCCCCS---------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--------hhhccCCCCCEEECcCCcCch---------
Confidence 467889999998887 8888888999999999999886432 236788999999999777654
Q ss_pred ccccchhcccccCccccCCcCCccCc--hhhhccCCCcEEecCCccCcccccc----cccccccccEeecCCcccccccc
Q 042791 451 EIPENVGKLIHLKYLNLSELGIERLP--ETLCELYNLQKLDIRRCRNLRELPA----GIGKLMNMRTLLNGETYALKYMP 524 (761)
Q Consensus 451 ~lp~~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~~~~~~~~~p 524 (761)
.+|..+..+++|++|++++|.++.+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|
T Consensus 86 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~-~~~~ 163 (168)
T 2ell_A 86 GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED-QEAP 163 (168)
T ss_dssp CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS-CBCC
T ss_pred HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh-hhcc
Confidence 36766777899999999999998876 688889999999999987 445554 678899999999988843 4444
No 127
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=4.9e-12 Score=124.74 Aligned_cols=147 Identities=18% Similarity=0.173 Sum_probs=100.4
Q ss_pred CceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccc
Q 042791 374 VKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIP 453 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp 453 (761)
..++.+.++.+.+..++ .+..+++|+.|++++|.+.. +++ +..+++|+.|++++|.+.+ +|
T Consensus 41 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~------~~~--l~~l~~L~~L~L~~N~l~~----------l~ 101 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD------LSP--LKDLTKLEELSVNRNRLKN----------LN 101 (263)
T ss_dssp TTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG--GTTCSSCCEEECCSSCCSC----------CT
T ss_pred CcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC------Chh--hccCCCCCEEECCCCccCC----------cC
Confidence 46677777777777776 67777888888887776532 222 6677888888888665543 33
Q ss_pred cchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCC
Q 042791 454 ENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNL 533 (761)
Q Consensus 454 ~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 533 (761)
.. .. ++|++|++++|.++.++ .+..+++|++|++++|. +..+| .+..+++|++|++++|.+... ..+..+++|
T Consensus 102 ~~-~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L 174 (263)
T 1xeu_A 102 GI-PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKV 174 (263)
T ss_dssp TC-CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCC
T ss_pred cc-cc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCC
Confidence 32 22 77888888888777765 47777888888888777 44455 477778888888887755443 456777777
Q ss_pred cccCceeecCccC
Q 042791 534 RTLDRFVVGGGVD 546 (761)
Q Consensus 534 ~~L~l~~~~~~~~ 546 (761)
+.|++++|.....
T Consensus 175 ~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 175 NWIDLTGQKCVNE 187 (263)
T ss_dssp CEEEEEEEEEECC
T ss_pred CEEeCCCCcccCC
Confidence 7777777764443
No 128
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.31 E-value=1.3e-12 Score=128.82 Aligned_cols=155 Identities=17% Similarity=0.148 Sum_probs=94.4
Q ss_pred eecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccc
Q 042791 382 NFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIH 461 (761)
Q Consensus 382 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~ 461 (761)
..+.+..++ .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+. .+|. +..+++
T Consensus 27 ~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~------l~--~l~~l~~L~~L~L~~N~i~----------~~~~-l~~l~~ 86 (263)
T 1xeu_A 27 GKQSVTDLV-SQKELSGVQNFNGDNSNIQS------LA--GMQFFTNLKELHLSHNQIS----------DLSP-LKDLTK 86 (263)
T ss_dssp TCSCTTSEE-CHHHHTTCSEEECTTSCCCC------CT--TGGGCTTCCEEECCSSCCC----------CCGG-GTTCSS
T ss_pred cCCCccccc-chhhcCcCcEEECcCCCccc------ch--HHhhCCCCCEEECCCCccC----------CChh-hccCCC
Confidence 334444444 56677777777777776532 11 1566777777777755544 3444 667777
Q ss_pred cCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcccCceee
Q 042791 462 LKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVV 541 (761)
Q Consensus 462 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 541 (761)
|++|++++|.++.+|.... ++|++|++++|. +..++ .+..+++|++|++++|.+. .++ .+..+++|+.|++++|
T Consensus 87 L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~-~~~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 87 LEELSVNRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CCEEECCSSCCSCCTTCCC--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCC-BCG-GGGGCTTCCEEECTTS
T ss_pred CCEEECCCCccCCcCcccc--CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCC-CCh-HHccCCCCCEEECCCC
Confidence 7777777777776664333 777777777776 44444 3777777777777777543 333 4666666666666665
Q ss_pred cCccCCCCccCcccccCccCCc
Q 042791 542 GGGVDGSNTCRLESLKNLQLRG 563 (761)
Q Consensus 542 ~~~~~~~~~~~l~~L~~L~l~~ 563 (761)
..... ..+..+++|+.|++++
T Consensus 161 ~i~~~-~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 161 EITNT-GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCCBC-TTSTTCCCCCEEEEEE
T ss_pred cCcch-HHhccCCCCCEEeCCC
Confidence 54443 3344444455554443
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=3.9e-14 Score=155.28 Aligned_cols=181 Identities=17% Similarity=0.174 Sum_probs=123.7
Q ss_pred CceEEEEEeecCCCCCcccccCCCceeEEEEcccCC--------CCCCCchhhHHHHhccCCcceEEe-eccccccCC--
Q 042791 374 VKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSY--------SNGSLNGSILQELFSKLACLRALV-ISQFYISGS-- 442 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------~~~~~~~~~~~~~~~~~~~L~~L~-l~~~~~~~~-- 442 (761)
..+++++++.+.+..+|+.+..|++|+.|++.++.. ..... ...++..+..+++|+.|+ ++.|.+...
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~-~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDP-LLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT-GGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhccc-ccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 345566677777777777777777887777654420 00001 122344566677777776 454432210
Q ss_pred -ccccccccccccchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccc
Q 042791 443 -HHEANRIKEIPENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALK 521 (761)
Q Consensus 443 -~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 521 (761)
....+.+..+| ...|++|++++|.++.+|. ++.+++|+.|+|++|. +..+|..++.+++|+.|++++|.+.
T Consensus 428 l~l~~n~i~~l~-----~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~- 499 (567)
T 1dce_A 428 KFLLENSVLKME-----YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALE- 499 (567)
T ss_dssp HHHHHHHHHHHH-----HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCC-
T ss_pred hhhhcccccccC-----ccCceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCC-
Confidence 00011122222 1358889999999888887 8889999999999887 5588888899999999999998654
Q ss_pred cccccCCCCCCCcccCceeecCccC--CCCccCcccccCccCCce
Q 042791 522 YMPIGISKLTNLRTLDRFVVGGGVD--GSNTCRLESLKNLQLRGK 564 (761)
Q Consensus 522 ~~p~~l~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~ 564 (761)
.+| .++.+++|+.|++++|..... +..+..+++|+.|+++++
T Consensus 500 ~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 500 NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 477 788899999999988887766 677788888999888865
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=8.7e-13 Score=117.98 Aligned_cols=128 Identities=22% Similarity=0.227 Sum_probs=85.7
Q ss_pred CCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCcc
Q 042791 395 EFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIER 474 (761)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~ 474 (761)
..++|+.|++++|.+....+ +. .+..+++|++|++++|.+.+ + ..++.+++|++|++++|.++.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~----~~-~~~~l~~L~~L~l~~n~l~~----------~-~~~~~l~~L~~L~Ls~n~i~~ 78 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKL----EG-LTDEFEELEFLSTINVGLTS----------I-ANLPKLNKLKKLELSDNRVSG 78 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBC----CS-CCTTCTTCCEEECTTSCCCC----------C-TTCCCCTTCCEEECCSSCCCS
T ss_pred CCccCeEEEccCCcCChhHH----HH-HHhhcCCCcEEECcCCCCCC----------c-hhhhcCCCCCEEECCCCcccc
Confidence 34678888888877542222 22 35677888888888665543 3 456677888888888888776
Q ss_pred -CchhhhccCCCcEEecCCccCcccc--cccccccccccEeecCCcccccccc---ccCCCCCCCcccCce
Q 042791 475 -LPETLCELYNLQKLDIRRCRNLREL--PAGIGKLMNMRTLLNGETYALKYMP---IGISKLTNLRTLDRF 539 (761)
Q Consensus 475 -lp~~~~~l~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~~p---~~l~~l~~L~~L~l~ 539 (761)
+|..+..+++|++|++++|. +..+ |..+..+++|++|++++|.+....+ ..+..+++|+.|+++
T Consensus 79 ~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 79 GLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777778888888888877 4433 3667788888888888885443322 246667777776653
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=1.4e-12 Score=135.69 Aligned_cols=168 Identities=19% Similarity=0.161 Sum_probs=108.7
Q ss_pred EEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhc-cCCcceEEeeccccccCCccccccccccccch
Q 042791 378 HLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFS-KLACLRALVISQFYISGSHHEANRIKEIPENV 456 (761)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~ 456 (761)
.++...+.+..+|..+. +.++.|+|++|.+. .+++..+. .+++|+.|+|++|.+.. ..|..|
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~------~l~~~~~~~~l~~L~~L~L~~N~i~~---------i~~~~~ 84 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLS------RLRAEWTPTRLTNLHSLLLSHNHLNF---------ISSEAF 84 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCC------EECTTSSSSCCTTCCEEECCSSCCCE---------ECTTTT
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCC------ccChhhhhhcccccCEEECCCCcCCc---------cChhhc
Confidence 56666677777776553 45788888887752 22333344 77888888888665543 123457
Q ss_pred hcccccCccccCCcCCccCch-hhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccC----CCCC
Q 042791 457 GKLIHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGI----SKLT 531 (761)
Q Consensus 457 ~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l----~~l~ 531 (761)
..+++|++|++++|.++.+|. .|..+++|++|+|++|......|..+..+++|++|++++|.+ ..+|..+ ..++
T Consensus 85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~ 163 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLP 163 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CT
T ss_pred cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCC
Confidence 778888888888888886664 577888888888888875555566778888888888888854 3455443 4577
Q ss_pred CCcccCceeecCccCCC-CccCccc--ccCccCCc
Q 042791 532 NLRTLDRFVVGGGVDGS-NTCRLES--LKNLQLRG 563 (761)
Q Consensus 532 ~L~~L~l~~~~~~~~~~-~~~~l~~--L~~L~l~~ 563 (761)
+|+.|++++|.....+. .+..++. ++.|++.+
T Consensus 164 ~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred cCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 77777777776554431 1223333 24555554
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.29 E-value=3.8e-12 Score=121.90 Aligned_cols=135 Identities=15% Similarity=0.100 Sum_probs=111.9
Q ss_pred CCceEEEEEeecCCCCCcc--cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPM--SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIK 450 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 450 (761)
...++.|.++.+.+..+++ .+..+++|+.|++++|.+. .+++..|.++++|++|+|++|.+.+
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~------~i~~~~~~~l~~L~~L~Ls~N~l~~--------- 95 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT------DIEEGAFEGASGVNEILLTSNRLEN--------- 95 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCC---------
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC------EECHHHhCCCCCCCEEECCCCccCc---------
Confidence 3456899999999988743 4889999999999999863 3334457899999999999877764
Q ss_pred ccccchhcccccCccccCCcCCccC-chhhhccCCCcEEecCCccCcccccccccccccccEeecCCcccccc
Q 042791 451 EIPENVGKLIHLKYLNLSELGIERL-PETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKY 522 (761)
Q Consensus 451 ~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~ 522 (761)
..|..+..+++|++|++++|.++.+ |..+..+++|++|+|++|......|..+..+++|++|++++|.+...
T Consensus 96 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 2344588999999999999999976 67889999999999999996666688899999999999999976543
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=3.2e-12 Score=114.27 Aligned_cols=126 Identities=27% Similarity=0.259 Sum_probs=107.0
Q ss_pred CCceEEEEEeecCCC--CCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccc
Q 042791 373 GVKVRHLGLNFQRGA--SFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIK 450 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 450 (761)
...++.+.++.+.+. .+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~n~i~~--------- 78 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--------ANLPKLNKLKKLELSDNRVSG--------- 78 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--------TTCCCCTTCCEEECCSSCCCS---------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--------hhhhcCCCCCEEECCCCcccc---------
Confidence 467889999999988 8898889999999999999987442 236889999999999877764
Q ss_pred ccccchhcccccCccccCCcCCccCc--hhhhccCCCcEEecCCccCcccccc----cccccccccEeecCC
Q 042791 451 EIPENVGKLIHLKYLNLSELGIERLP--ETLCELYNLQKLDIRRCRNLRELPA----GIGKLMNMRTLLNGE 516 (761)
Q Consensus 451 ~lp~~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~~ 516 (761)
.+|..++.+++|++|++++|.++.+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++
T Consensus 79 ~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 37777788999999999999999875 789999999999999998 455554 678999999999863
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=1.1e-13 Score=151.66 Aligned_cols=38 Identities=21% Similarity=0.008 Sum_probs=31.3
Q ss_pred hcccccCccccCCcCCccCchhhhccCCCcEEecCCcc
Q 042791 457 GKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCR 494 (761)
Q Consensus 457 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 494 (761)
..+++|+.|++++|.++.+|..+++|++|+.|++++|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~ 383 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKW 383 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccch
Confidence 45778888888888888888888888888888887654
No 135
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.25 E-value=9.2e-12 Score=119.18 Aligned_cols=127 Identities=20% Similarity=0.244 Sum_probs=97.1
Q ss_pred CcceEEeeccccccCCccccccccccc-cchhcccccCccccCCcCCccC-chhhhccCCCcEEecCCccCccccccc-c
Q 042791 427 ACLRALVISQFYISGSHHEANRIKEIP-ENVGKLIHLKYLNLSELGIERL-PETLCELYNLQKLDIRRCRNLRELPAG-I 503 (761)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~-~ 503 (761)
++|+.|++++|.+. .+| ..+..+++|++|++++|.++.+ |..|.++++|++|+|++|. +..+|.. +
T Consensus 32 ~~l~~L~l~~n~i~----------~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNTIK----------VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLF 100 (220)
T ss_dssp TTCCEEECCSSCCC----------EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTT
T ss_pred cCCCEEECCCCcCC----------CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHc
Confidence 67899999866554 344 3677888999999999998865 6788889999999999988 4456654 5
Q ss_pred cccccccEeecCCccccccccccCCCCCCCcccCceeecCccCCC-CccCcccccCccCCce
Q 042791 504 GKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGS-NTCRLESLKNLQLRGK 564 (761)
Q Consensus 504 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~ 564 (761)
..+++|++|++++|.+....|..+..+++|+.|++++|.....+. .+..+++|+.|+++++
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 788999999999997776667778888888888888887665543 3555667777766654
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.23 E-value=2.2e-11 Score=113.86 Aligned_cols=128 Identities=18% Similarity=0.192 Sum_probs=72.7
Q ss_pred EEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccch
Q 042791 377 RHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENV 456 (761)
Q Consensus 377 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~ 456 (761)
+.++++.+.+..+|..+.. +|+.|++++|.+..... ..++..+++|++|+|++|.+.+ ..|..+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~-----~~~~~~l~~L~~L~Ls~N~l~~---------~~~~~~ 74 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISS-----DGLFGRLPHLVKLELKRNQLTG---------IEPNAF 74 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCC-----SCSGGGCTTCCEEECCSSCCCC---------BCTTTT
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCC-----ccccccCCCCCEEECCCCCCCC---------cCHhHc
Confidence 3556666666666654432 66666666665422110 0124556666666666555443 234556
Q ss_pred hcccccCccccCCcCCccCch-hhhccCCCcEEecCCccCcccccccccccccccEeecCCcccc
Q 042791 457 GKLIHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYAL 520 (761)
Q Consensus 457 ~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 520 (761)
..+++|++|++++|.++.++. .+.++++|++|+|++|......|..+..+++|++|++++|.+.
T Consensus 75 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 666666666666666665443 3566666666666666644445555666666666666666443
No 137
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.22 E-value=3.5e-12 Score=132.59 Aligned_cols=155 Identities=19% Similarity=0.128 Sum_probs=121.2
Q ss_pred CCceEEEEEeecCCCCCccc-cc-CCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPMS-FF-EFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIK 450 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 450 (761)
...++.|+++.+.+..++.. +. .+++|+.|+|++|.+. .+++..|..+++|+.|+|++|.+.
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~------~i~~~~~~~l~~L~~L~Ls~N~l~---------- 101 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN------FISSEAFVPVPNLRYLDLSSNHLH---------- 101 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCC----------
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC------ccChhhccCCCCCCEEECCCCcCC----------
Confidence 44678999999999988765 55 8999999999999863 334445789999999999977665
Q ss_pred ccc-cchhcccccCccccCCcCCccC-chhhhccCCCcEEecCCccCcccccccc----cccccccEeecCCcccccccc
Q 042791 451 EIP-ENVGKLIHLKYLNLSELGIERL-PETLCELYNLQKLDIRRCRNLRELPAGI----GKLMNMRTLLNGETYALKYMP 524 (761)
Q Consensus 451 ~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~----~~l~~L~~L~l~~~~~~~~~p 524 (761)
.+| ..|..+++|++|++++|.++.+ |..|..+++|+.|+|++|. +..+|..+ ..+++|++|++++|.+...-+
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence 344 4578899999999999999966 5789999999999999998 66677654 579999999999996554333
Q ss_pred ccCCCCCC--CcccCceeecCc
Q 042791 525 IGISKLTN--LRTLDRFVVGGG 544 (761)
Q Consensus 525 ~~l~~l~~--L~~L~l~~~~~~ 544 (761)
..+..+++ ++.|++.+|.+.
T Consensus 181 ~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 181 TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHHSCHHHHTTEECCSSCEE
T ss_pred HHhhhccHhhcceEEecCCCcc
Confidence 44666665 477888777644
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=1.2e-11 Score=113.89 Aligned_cols=131 Identities=23% Similarity=0.130 Sum_probs=97.1
Q ss_pred cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcC
Q 042791 392 SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELG 471 (761)
Q Consensus 392 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~ 471 (761)
.+.++++|+.|++++|.+..- +.+....++|++|++++|.+.+ + ..+..+++|++|++++|.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-------~~~~~~~~~L~~L~Ls~N~l~~----------~-~~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-------ENLGATLDQFDAIDFSDNEIRK----------L-DGFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-------CCGGGGTTCCSEEECCSSCCCE----------E-CCCCCCSSCCEEECCSSC
T ss_pred hcCCcCCceEEEeeCCCCchh-------HHhhhcCCCCCEEECCCCCCCc----------c-cccccCCCCCEEECCCCc
Confidence 456788888888888876421 1122334489999999776543 3 457778889999999999
Q ss_pred CccCchhh-hccCCCcEEecCCccCcccccc--cccccccccEeecCCcccccccccc----CCCCCCCcccCceeec
Q 042791 472 IERLPETL-CELYNLQKLDIRRCRNLRELPA--GIGKLMNMRTLLNGETYALKYMPIG----ISKLTNLRTLDRFVVG 542 (761)
Q Consensus 472 i~~lp~~~-~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~l~~~~ 542 (761)
++.+|..+ ..+++|++|++++|. +..+|. .+..+++|++|++++|.+. .+|.. +..+++|+.|++..+.
T Consensus 76 l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 76 ICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 88887554 888999999999887 566776 6788889999999988654 55653 6777888888877665
No 139
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=1.4e-10 Score=118.70 Aligned_cols=189 Identities=13% Similarity=0.135 Sum_probs=119.7
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-C-CeeEEEEecCCCCHHH
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-F-EKVIWVCVSNTFDQIR 84 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f-~~~~~v~~~~~~~~~~ 84 (761)
|...++++||+..++.+.+++.... .+.++|+|++|+||||+|+++++ ..... + ..++++..........
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~ 88 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGIDV 88 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEecCccccChHH
Confidence 3445679999999999999987432 23388999999999999999997 33221 1 1234444333223222
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchh-hhhh
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSSI-KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNES-VARM 162 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~-~~~~ 162 (761)
+ +.+...+.... ..+ .+++.++|+||++......++.+...+.....++++|+||+... +...
T Consensus 89 i-~~~~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~ 153 (323)
T 1sxj_B 89 V-RNQIKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEP 153 (323)
T ss_dssp H-HTHHHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred H-HHHHHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhH
Confidence 2 11111111000 011 34588999999977655556666666666555677888876532 2222
Q ss_pred -cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCch-hHHHHHH
Q 042791 163 -MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPL-AAKVIGN 222 (761)
Q Consensus 163 -~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 222 (761)
......+++.+++.++..+++...+..... ....+.+..+++.++|.|. ++..+..
T Consensus 154 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 154 LQSQCAILRYSKLSDEDVLKRLLQIIKLEDV----KYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhceEEeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 123458999999999999999987643211 1234567889999999995 4555443
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=5.3e-11 Score=111.12 Aligned_cols=92 Identities=18% Similarity=0.148 Sum_probs=44.9
Q ss_pred ccccchhcccccCccccCCcCCccCc-hhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCC
Q 042791 451 EIPENVGKLIHLKYLNLSELGIERLP-ETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISK 529 (761)
Q Consensus 451 ~lp~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 529 (761)
.+|..+..+++|++|++++|.++.++ ..|.++++|++|+|++|......|..+..+++|++|++++|.+....+..+..
T Consensus 45 ~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~ 124 (193)
T 2wfh_A 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND 124 (193)
T ss_dssp SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhc
Confidence 34445555555555555555555444 23555555555555555533333334555555555555555433222223444
Q ss_pred CCCCcccCceeec
Q 042791 530 LTNLRTLDRFVVG 542 (761)
Q Consensus 530 l~~L~~L~l~~~~ 542 (761)
+++|+.|++.+|.
T Consensus 125 l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 125 LSALSHLAIGANP 137 (193)
T ss_dssp CTTCCEEECCSSC
T ss_pred CccccEEEeCCCC
Confidence 4555555444443
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=4.4e-11 Score=111.74 Aligned_cols=125 Identities=17% Similarity=0.147 Sum_probs=78.9
Q ss_pred eEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccccc--chhcccccCccccCCcCCccC-c
Q 042791 400 RSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPE--NVGKLIHLKYLNLSELGIERL-P 476 (761)
Q Consensus 400 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~--~~~~l~~L~~L~l~~~~i~~l-p 476 (761)
++++++++.+. .+|..+ ..+|++|++++|.+. .++. .+..+++|++|++++|.++.+ |
T Consensus 11 ~~l~~s~~~l~------~ip~~~---~~~l~~L~l~~n~i~----------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 71 (192)
T 1w8a_A 11 TTVDCTGRGLK------EIPRDI---PLHTTELLLNDNELG----------RISSDGLFGRLPHLVKLELKRNQLTGIEP 71 (192)
T ss_dssp TEEECTTSCCS------SCCSCC---CTTCSEEECCSCCCC----------SBCCSCSGGGCTTCCEEECCSSCCCCBCT
T ss_pred CEEEcCCCCcC------cCccCC---CCCCCEEECCCCcCC----------ccCCccccccCCCCCEEECCCCCCCCcCH
Confidence 56666666542 222211 236777777755544 3433 266777777777777777755 5
Q ss_pred hhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcccCceeecC
Q 042791 477 ETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGG 543 (761)
Q Consensus 477 ~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~ 543 (761)
..|..+++|++|+|++|......|..+..+++|++|++++|.+....|..+..+++|+.|++.+|..
T Consensus 72 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred hHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 6677777777777777774444445567777777777777766666666676777777776666553
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=1.5e-11 Score=113.30 Aligned_cols=127 Identities=15% Similarity=0.207 Sum_probs=98.6
Q ss_pred hccCCcceEEeeccccccCCccccccccccccchhccc-ccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccc
Q 042791 423 FSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLI-HLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPA 501 (761)
Q Consensus 423 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~ 501 (761)
+..+.+|+.|++++|.+. .+|. +..+. +|++|++++|.++.+ ..+..+++|++|++++|. +..+|.
T Consensus 15 ~~~~~~L~~L~l~~n~l~----------~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~ 81 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP----------VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGE 81 (176)
T ss_dssp EECTTSCEEEECTTSCCC----------SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECS
T ss_pred cCCcCCceEEEeeCCCCc----------hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCc
Confidence 457889999999977654 4544 44555 999999999999987 678899999999999998 556665
Q ss_pred cc-cccccccEeecCCccccccccc--cCCCCCCCcccCceeecCccCCCC----ccCcccccCccCCc
Q 042791 502 GI-GKLMNMRTLLNGETYALKYMPI--GISKLTNLRTLDRFVVGGGVDGSN----TCRLESLKNLQLRG 563 (761)
Q Consensus 502 ~~-~~l~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~~~~~~~~----~~~l~~L~~L~l~~ 563 (761)
.+ ..+++|++|++++|.+ ..+|. .+..+++|+.|++++|.....+.. +..+++|+.|++++
T Consensus 82 ~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred chhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 55 8999999999999965 56665 678888899998888876665543 55566666666553
No 143
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.15 E-value=4.7e-10 Score=111.27 Aligned_cols=170 Identities=7% Similarity=-0.009 Sum_probs=110.6
Q ss_pred eecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-----C--CeeEEEEecCCCCHHHH
Q 042791 13 VCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-----F--EKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 13 ~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-----f--~~~~~v~~~~~~~~~~~ 85 (761)
+.||++|++++...|...-. ++.++.+.|+|++|+|||++|++++++ +... . -.++++++....+...+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~--L~~~~~~~~~~~~~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDE--LITSSARKELPIFDYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHH--HHHTTTTTSSCCEEEEEEETTCCC--HHH
T ss_pred cCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhhhccCCceEEEEEeccccCCHHHH
Confidence 78999999999988776432 356788999999999999999999984 4321 1 13567788788888999
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHh---CCceEEEEEeCCCCCCccCchhHHHhhcCC-CCCc--EEEEEecchh-
Q 042791 86 AKAIIEGLGESASGLNEFQSLMSRIQSSI---KGKKNFLVLDDVWDGDYNKWQPFFRCLKNG-LHGS--KILVTTRNES- 158 (761)
Q Consensus 86 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l---~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~-~~~~--~iiiTtr~~~- 158 (761)
+..|++++..............+.+-..+ .++++++++|+++... ..+.+...+.+. ...+ .||.++...+
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 99999999654322222223333333332 4568999999997754 455555555431 1222 2333443321
Q ss_pred ----hhh----hcCCCCeeecCCCChHHHHHHHHHHhhC
Q 042791 159 ----VAR----MMGSTDSISIKQLAEEECWSLFKQLAFF 189 (761)
Q Consensus 159 ----~~~----~~~~~~~~~l~~l~~~ea~~l~~~~~~~ 189 (761)
+.+ .+ ....+.+.+++.+|..+++.+++..
T Consensus 176 ~~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 176 IREQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CHHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred chhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHHh
Confidence 111 11 1246899999999999999988643
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=3.1e-13 Score=127.38 Aligned_cols=82 Identities=26% Similarity=0.340 Sum_probs=39.5
Q ss_pred hccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCccccccc
Q 042791 423 FSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAG 502 (761)
Q Consensus 423 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~ 502 (761)
+..+++|++|++++|.+. .+| .+..+++|++|++++|.++.+|..+..+++|++|++++|. +..+| .
T Consensus 44 ~~~l~~L~~L~ls~n~l~----------~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~ 110 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIE----------KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-G 110 (198)
T ss_dssp HHHTTTCSEEECSEEEES----------CCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-H
T ss_pred HhcCCCCCEEECCCCCCc----------ccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-c
Confidence 444555555555543332 233 4444555555555555555555444444555555555544 22333 2
Q ss_pred ccccccccEeecCCc
Q 042791 503 IGKLMNMRTLLNGET 517 (761)
Q Consensus 503 ~~~l~~L~~L~l~~~ 517 (761)
+..+++|++|++++|
T Consensus 111 ~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNN 125 (198)
T ss_dssp HHHHHHSSEEEESEE
T ss_pred cccCCCCCEEECCCC
Confidence 445555555555554
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.13 E-value=1.1e-10 Score=108.84 Aligned_cols=125 Identities=16% Similarity=0.166 Sum_probs=100.9
Q ss_pred EEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccch
Q 042791 377 RHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENV 456 (761)
Q Consensus 377 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~ 456 (761)
+.++.+.+.+..+|..+. ++|+.|++++|.+. .++ ..|..+++|+.|+|++|.+.. ..+..|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~------~ip-~~~~~l~~L~~L~Ls~N~i~~---------i~~~~f 74 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT------LVP-KELSNYKHLTLIDLSNNRIST---------LSNQSF 74 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC------SCC-GGGGGCTTCCEEECCSSCCCC---------CCTTTT
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc------hhH-HHhhcccCCCEEECCCCcCCE---------eCHhHc
Confidence 356777788888887653 68999999999874 222 347899999999999777664 234568
Q ss_pred hcccccCccccCCcCCccCch-hhhccCCCcEEecCCccCcccccc-cccccccccEeecCCcccc
Q 042791 457 GKLIHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRTLLNGETYAL 520 (761)
Q Consensus 457 ~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~ 520 (761)
..+++|++|++++|.++.+|. .|..+++|++|+|++|. +..+|. .+..+++|++|++++|...
T Consensus 75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 899999999999999998775 68999999999999998 445555 5789999999999998654
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=8.5e-11 Score=108.35 Aligned_cols=124 Identities=23% Similarity=0.321 Sum_probs=75.4
Q ss_pred EEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccccc-ch
Q 042791 378 HLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPE-NV 456 (761)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~-~~ 456 (761)
.+....+.+..+|..+ .++|+.|++++|.+. .+++..+..+++|++|++++|.+. .+|. .+
T Consensus 11 ~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~ 72 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGI--PSSATRLELESNKLQ------SLPHGVFDKLTQLTKLSLSQNQIQ----------SLPDGVF 72 (177)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECCSSCCC------CCCTTTTTTCTTCSEEECCSSCCC----------CCCTTTT
T ss_pred EEEecCCCCccCCCCC--CCCCcEEEeCCCccc------EeCHHHhcCcccccEEECCCCcce----------EeChhHc
Confidence 4555666666666443 256777777776653 122333566777777777755543 2332 34
Q ss_pred hcccccCccccCCcCCccCchh-hhccCCCcEEecCCccCccccccc-ccccccccEeecCCcccc
Q 042791 457 GKLIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCRNLRELPAG-IGKLMNMRTLLNGETYAL 520 (761)
Q Consensus 457 ~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~ 520 (761)
..+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|...
T Consensus 73 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 6677777777777777766543 4667777777777766 3344443 356777777777776543
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.12 E-value=4.1e-11 Score=135.74 Aligned_cols=155 Identities=20% Similarity=0.153 Sum_probs=98.6
Q ss_pred CceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccCc
Q 042791 397 DRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERLP 476 (761)
Q Consensus 397 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp 476 (761)
+.++.|.|.++.+.. . ....|+.++|+.+.+......++.+...|..+..+..|+.|+|++|.+..+|
T Consensus 173 ~~~~~l~L~~n~~~~------~------~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~ 240 (727)
T 4b8c_D 173 PLTPKIELFANGKDE------A------NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNIS 240 (727)
T ss_dssp -------------------------------------------------------------CCCCCCEEECTTSCCSCCC
T ss_pred CccceEEeeCCCCCc------c------hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCC
Confidence 457777777665421 1 1234555666666665543335556667778899999999999999999999
Q ss_pred hhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcccCceeecCccCCCCccCcccc
Q 042791 477 ETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDGSNTCRLESL 556 (761)
Q Consensus 477 ~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L 556 (761)
..+.++++|++|+|++|. +..+|..+..+++|++|+|++|.+. .+|..++.+++|+.|++++|....++..+..+++|
T Consensus 241 ~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 241 ANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNL 318 (727)
T ss_dssp GGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTC
T ss_pred hhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCc
Confidence 999999999999999998 4589999999999999999999765 88999999999999999999988888889999999
Q ss_pred cCccCCceE
Q 042791 557 KNLQLRGKC 565 (761)
Q Consensus 557 ~~L~l~~~~ 565 (761)
+.|+++++.
T Consensus 319 ~~L~L~~N~ 327 (727)
T 4b8c_D 319 QFLGVEGNP 327 (727)
T ss_dssp CCEECTTSC
T ss_pred cEEeCCCCc
Confidence 999999753
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=2.5e-12 Score=121.15 Aligned_cols=143 Identities=18% Similarity=0.183 Sum_probs=113.0
Q ss_pred ceEEEEEee--cCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccc
Q 042791 375 KVRHLGLNF--QRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEI 452 (761)
Q Consensus 375 ~~~~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 452 (761)
.++...+.. +.+..+|..+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+. .+
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~------l~--~~~~l~~L~~L~l~~n~l~----------~l 85 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK------IS--SLSGMENLRILSLGRNLIK----------KI 85 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC------CC--CHHHHTTCCEEEEEEEEEC----------SC
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc------cc--ccccCCCCCEEECCCCCcc----------cc
Confidence 344444443 3566777789999999999999998744 22 3678899999999976654 57
Q ss_pred ccchhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCccccc--ccccccccccEeecCCcccccccccc----
Q 042791 453 PENVGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELP--AGIGKLMNMRTLLNGETYALKYMPIG---- 526 (761)
Q Consensus 453 p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~~---- 526 (761)
|..+..+++|++|++++|.++.+| .+..+++|++|++++|. +..+| ..+..+++|++|++++|......|..
T Consensus 86 ~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 163 (198)
T 1ds9_A 86 ENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163 (198)
T ss_dssp SSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHH
T ss_pred cchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchH
Confidence 877888899999999999999987 78999999999999998 45444 36889999999999999776665542
Q ss_pred ------CCCCCCCcccC
Q 042791 527 ------ISKLTNLRTLD 537 (761)
Q Consensus 527 ------l~~l~~L~~L~ 537 (761)
+..+++|+.|+
T Consensus 164 ~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 164 EYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHCSSCSEEC
T ss_pred HHHHHHHHhCCCcEEEC
Confidence 66777777776
No 149
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=5e-10 Score=114.87 Aligned_cols=186 Identities=15% Similarity=0.071 Sum_probs=119.0
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC--CeeEEEEecCCCCHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSNTFDQI 83 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f--~~~~~v~~~~~~~~~ 83 (761)
.+..-++++|+++.++.+..++... ..+.+.++|++|+||||+|+++++ .+.... ..++.+.++......
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~ 91 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELNASDERGIN 91 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEEEEETTCHHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCceEEeeccccCchH
Confidence 3445677999999999999998743 233489999999999999999997 332221 113333332211111
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHH--h-CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchh-h
Q 042791 84 RIAKAIIEGLGESASGLNEFQSLMSRIQSS--I-KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNES-V 159 (761)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~--l-~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~-~ 159 (761)
.+. ......... + .+++.++|+||++......+..+...+.....++++|+|+.... +
T Consensus 92 ~~~------------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l 153 (327)
T 1iqp_A 92 VIR------------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 153 (327)
T ss_dssp TTH------------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred HHH------------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcccc
Confidence 110 011111111 1 25678999999987666666777777766556778888876532 2
Q ss_pred hhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHH
Q 042791 160 ARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIG 221 (761)
Q Consensus 160 ~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 221 (761)
...+ .....+++.+++.++..+++...+..... ....+....+++.++|.|..+..+.
T Consensus 154 ~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 154 IEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp CHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 2211 12347899999999999999987643221 2334567889999999998655443
No 150
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.01 E-value=4.4e-09 Score=109.94 Aligned_cols=199 Identities=14% Similarity=0.151 Sum_probs=119.6
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHH
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIA 86 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 86 (761)
+..-++++||+..++.+.+.+.... .++.+.|+|++|+||||+|+++++ ........ ....+... .. .
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~--~l~~~~~~-~~~~~~~~---~~-~ 79 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAK--GLNCETGI-TATPCGVC---DN-C 79 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHH--HHSCTTCS-CSSCCSSS---HH-H
T ss_pred CCchhhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHH--HhCCCCCC-CCCCCccc---HH-H
Confidence 3445679999999999999987532 245789999999999999999987 33221100 00000000 00 0
Q ss_pred HHHHHH-------hcCC-CCCCCcHHHHHHHHHHH-hCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecch
Q 042791 87 KAIIEG-------LGES-ASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE 157 (761)
Q Consensus 87 ~~i~~~-------l~~~-~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~ 157 (761)
..+... +... ...........+.+... ..+++.++|+||++..+...++.+...+........+|++|...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 159 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (373)
T ss_dssp HHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCG
T ss_pred HHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 011100 0000 01122233322222111 13467899999998766666777777777655566777777643
Q ss_pred -hhhhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHH
Q 042791 158 -SVARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIG 221 (761)
Q Consensus 158 -~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 221 (761)
.+... ......+++.+++.++..+++...+..... ....+.+..+++.++|.|..+..+.
T Consensus 160 ~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~----~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 160 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 22222 223468999999999999999877633211 1234557889999999998776554
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=2.2e-09 Score=109.93 Aligned_cols=121 Identities=14% Similarity=0.158 Sum_probs=66.8
Q ss_pred CCCceeEEEEcccCCCCCCCchhhHHHHhcc-CCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCc
Q 042791 395 EFDRLRSLLIYDRSYSNGSLNGSILQELFSK-LACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIE 473 (761)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~ 473 (761)
.+.+++.|.++++- ...-... +.. +++|++|||++|.+... ..+ -+.++.++++.+..+
T Consensus 23 ~~~~l~~L~l~g~i------~~~~~~~-l~~~l~~L~~LdLs~n~i~~~--------~~~--~~~~~~~~~~~~~~~--- 82 (329)
T 3sb4_A 23 EANSITHLTLTGKL------NAEDFRH-LRDEFPSLKVLDISNAEIKMY--------SGK--AGTYPNGKFYIYMAN--- 82 (329)
T ss_dssp HHHHCSEEEEEEEE------CHHHHHH-HHHSCTTCCEEEEEEEEECCE--------EES--SSSSGGGCCEEECTT---
T ss_pred hhCceeEEEEeccc------cHHHHHH-HHHhhccCeEEecCcceeEEe--------cCc--ccccccccccccccc---
Confidence 36678888887642 1111222 344 89999999998877610 000 011122334444433
Q ss_pred cCc-hhhhc--------cCCCcEEecCCccCccccc-ccccccccccEeecCCccccccccccCCCCCCCcccC
Q 042791 474 RLP-ETLCE--------LYNLQKLDIRRCRNLRELP-AGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLD 537 (761)
Q Consensus 474 ~lp-~~~~~--------l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 537 (761)
.+| ..|.+ |.+|+.|+|.+ . +..++ ..|.+|++|+.+++.+|.....-+..+..+.++..+.
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP 154 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence 233 23455 77788888776 3 44444 3467778888888877754443344455555555444
No 152
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.97 E-value=3.1e-09 Score=108.45 Aligned_cols=185 Identities=12% Similarity=0.053 Sum_probs=116.5
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhc-cC-CeeEEEEecCCCCHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR-NF-EKVIWVCVSNTFDQI 83 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~-~f-~~~~~v~~~~~~~~~ 83 (761)
.|..-++++|++..++.+.+++... ..+.+.++|++|+|||++|+++++ .+.. .+ ..++.++++.....
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~- 82 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGI- 82 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHH--HHHTTCHHHHCEEEETTSTTCT-
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHH--HhcCCcccCCeEEEeCccccCh-
Confidence 3444567999999999999888643 223388999999999999999997 3321 11 12333443332111
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHH--h-CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchh-h
Q 042791 84 RIAKAIIEGLGESASGLNEFQSLMSRIQSS--I-KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNES-V 159 (761)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~--l-~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~-~ 159 (761)
............. + .+++.++|+||++.......+.+...+.......++|+||.... +
T Consensus 83 -----------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l 145 (319)
T 2chq_A 83 -----------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRI 145 (319)
T ss_dssp -----------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGS
T ss_pred -----------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhc
Confidence 1111111111111 1 25678999999977655555666666665555677887776532 2
Q ss_pred hhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 160 ARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 160 ~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
... ......+++.+++.++..+++...+..... ....+....+++.++|.+..+...
T Consensus 146 ~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~----~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 146 IEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV----KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp CHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC----CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred chHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 123458999999999999999987743221 223456788899999999755433
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.94 E-value=1.6e-09 Score=99.70 Aligned_cols=105 Identities=21% Similarity=0.232 Sum_probs=63.2
Q ss_pred CcceEEeeccccccCCccccccccccc-cchhcccccCccccCCcCCccCchh-hhccCCCcEEecCCccCccccccccc
Q 042791 427 ACLRALVISQFYISGSHHEANRIKEIP-ENVGKLIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCRNLRELPAGIG 504 (761)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~ 504 (761)
++|+.|++++|.+. .+| ..+..+++|++|++++|.++.+|.. +..+++|++|++++|......+..+.
T Consensus 28 ~~l~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 97 (177)
T 2o6r_A 28 SSATRLELESNKLQ----------SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFD 97 (177)
T ss_dssp TTCSEEECCSSCCC----------CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCcEEEeCCCccc----------EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhh
Confidence 56777777755443 233 2346667777777777777766543 46677777777777663333333356
Q ss_pred ccccccEeecCCcccccccccc-CCCCCCCcccCceeec
Q 042791 505 KLMNMRTLLNGETYALKYMPIG-ISKLTNLRTLDRFVVG 542 (761)
Q Consensus 505 ~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~~~ 542 (761)
.+++|++|++++|.+. .+|.. +..+++|+.|++.+|.
T Consensus 98 ~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 98 KLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCC
Confidence 6777777777777543 33333 4556666666665554
No 154
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.93 E-value=4.9e-09 Score=107.19 Aligned_cols=188 Identities=15% Similarity=0.114 Sum_probs=116.9
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHH
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIR 84 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (761)
..+..-++|+|++..++.+...+...... ....+.|.|+|++|+|||++|+++++ .... ...++.+.......+
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~--~~~~---~~~~~~~~~~~~~~~ 79 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAH--ELGV---NLRVTSGPAIEKPGD 79 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHH--HHTC---CEEEECTTTCCSHHH
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHH--HhCC---CEEEEeccccCChHH
Confidence 34556778999999999988887642110 12345788999999999999999997 3322 234454443322222
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCC------------------C
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL------------------H 146 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~------------------~ 146 (761)
+.. .+...+ .++.++++||++.........+...+.... +
T Consensus 80 l~~---------------------~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 80 LAA---------------------ILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp HHH---------------------HHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred HHH---------------------HHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 211 111111 245689999997755445555555444321 2
Q ss_pred CcEEEEEecchh-hhhhc-CC-CCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHH
Q 042791 147 GSKILVTTRNES-VARMM-GS-TDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNL 223 (761)
Q Consensus 147 ~~~iiiTtr~~~-~~~~~-~~-~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 223 (761)
+.++|.||.... +...+ .. ...+++.+++.++..+++...+..... ....+....+++.+.|+|..+..+...
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l~~ 213 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV----RITEEAALEIGRRSRGTMRVAKRLFRR 213 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 345666665432 21111 11 257899999999999999987754321 223456788999999999887766544
Q ss_pred h
Q 042791 224 L 224 (761)
Q Consensus 224 l 224 (761)
+
T Consensus 214 ~ 214 (324)
T 1hqc_A 214 V 214 (324)
T ss_dssp H
T ss_pred H
Confidence 3
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=1.1e-09 Score=99.80 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=54.3
Q ss_pred ccccccchhcccccCccccCCcCCccC-chhhhccCCCcEEecCCccCcccccc-cccccccccEeecCCcccccccccc
Q 042791 449 IKEIPENVGKLIHLKYLNLSELGIERL-PETLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRTLLNGETYALKYMPIG 526 (761)
Q Consensus 449 l~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~ 526 (761)
++.+|..+ .++|++|++++|.++.+ |..|..+++|++|+|++|. +..+|. .+..+++|++|++++|.+....+..
T Consensus 21 l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 97 (170)
T 3g39_A 21 LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97 (170)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCccCEeCHHH
Confidence 33455544 25666667776666655 3456666667777777666 333433 3466667777777666444333334
Q ss_pred CCCCCCCcccCceeecCc
Q 042791 527 ISKLTNLRTLDRFVVGGG 544 (761)
Q Consensus 527 l~~l~~L~~L~l~~~~~~ 544 (761)
+..+++|+.|++.+|...
T Consensus 98 ~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 98 FDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTTCTTCCEEECCSSCBC
T ss_pred hcCCCCCCEEEeCCCCCC
Confidence 666666666666666543
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.90 E-value=1.3e-09 Score=99.53 Aligned_cols=90 Identities=22% Similarity=0.315 Sum_probs=45.0
Q ss_pred ccccchhcccccCccccCCcCCccC-chhhhccCCCcEEecCCccCccccccc-ccccccccEeecCCccccccccc-cC
Q 042791 451 EIPENVGKLIHLKYLNLSELGIERL-PETLCELYNLQKLDIRRCRNLRELPAG-IGKLMNMRTLLNGETYALKYMPI-GI 527 (761)
Q Consensus 451 ~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~-~l 527 (761)
.+|..+. ++|++|++++|.++.+ |..|.++++|++|+|++|. +..+|.. +..+++|++|++++|.+. .+|. .+
T Consensus 26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 101 (174)
T 2r9u_A 26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAF 101 (174)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCccc-eeCHHHh
Confidence 4444432 4555555555555544 3345555555555555554 3334333 355555555555555433 2332 25
Q ss_pred CCCCCCcccCceeecCc
Q 042791 528 SKLTNLRTLDRFVVGGG 544 (761)
Q Consensus 528 ~~l~~L~~L~l~~~~~~ 544 (761)
..+++|+.|++.+|.+.
T Consensus 102 ~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCTTCSEEECCSSCBC
T ss_pred ccccCCCEEEeCCCCcc
Confidence 55555555555555433
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=2e-09 Score=110.19 Aligned_cols=287 Identities=12% Similarity=0.034 Sum_probs=152.7
Q ss_pred cCCcceEEeeccccccCCccccccccccccchhc-ccccCccccCCcCCccCchhhhccCCCcEEecCCccCccccc-cc
Q 042791 425 KLACLRALVISQFYISGSHHEANRIKEIPENVGK-LIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELP-AG 502 (761)
Q Consensus 425 ~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~-l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~ 502 (761)
.+.+++.|.++++- . ...+. .+.. +++|+.|+|++|.+......-+.++.+..+.+..+ .+| ..
T Consensus 23 ~~~~l~~L~l~g~i-~-----~~~~~----~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~a 88 (329)
T 3sb4_A 23 EANSITHLTLTGKL-N-----AEDFR----HLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYA 88 (329)
T ss_dssp HHHHCSEEEEEEEE-C-----HHHHH----HHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTT
T ss_pred hhCceeEEEEeccc-c-----HHHHH----HHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHH
Confidence 35678888888632 1 11122 2233 78899999999988722111122223455555544 233 33
Q ss_pred ccc--------cccccEeecCCccccccccccCCCCCCCcccCceeecCccCC-CCccCcccccCccCCceEEEcCCCCC
Q 042791 503 IGK--------LMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFVVGGGVDG-SNTCRLESLKNLQLRGKCSIEGLSNV 573 (761)
Q Consensus 503 ~~~--------l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~ 573 (761)
|.+ +++|+.|++.. .....-+..+.+|++|+.+++..+.....+ ..+.++.++..+.........
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~----- 162 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR----- 162 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH-----
T ss_pred hcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh-----
Confidence 566 99999999988 343333345889999999999877644333 233444444444333100000
Q ss_pred CChhHHhhccccccCCCC-cEEEEeecccCCCCCcCcccchhHHHHHhhCCCCCCCceEEEEeeCCCCCCchh-hhhcCC
Q 042791 574 SHVDEAERLQLYNKKNLL-RLHLVFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWL-TLLTNL 651 (761)
Q Consensus 574 ~~~~~l~~~~l~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~-~~l~~L 651 (761)
....+....+.+|..|+ .+.+.... .........-..+.++..+.+.+.-...-...+ ..+++|
T Consensus 163 -~~~~i~~~~f~~~~~L~~~i~~~~~~-------------~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L 228 (329)
T 3sb4_A 163 -FKNRWEHFAFIEGEPLETTIQVGAMG-------------KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNL 228 (329)
T ss_dssp -TSTTTTTSCEEESCCCEEEEEECTTC-------------CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTC
T ss_pred -ccccccccccccccccceeEEecCCC-------------cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCC
Confidence 11122233455666665 22222111 011122222223445666666654321111111 247788
Q ss_pred cEEEeecCCCCCCCCCCCCCCcceEEeccCcCceEeCccccCCC-cccccCCccc-eeeccccc-cc--ccCCCCCccce
Q 042791 652 RNLTLASCVNCEHLPPLGKLPLEKLVIDDLKSVKSVGNEFLGIE-ENIIAFPKLK-YLKIWATE-EL--EETTDIPRLSS 726 (761)
Q Consensus 652 ~~L~l~~~~~~~~~~~~~~lpl~~l~l~~l~~L~~~~~~~~~~~-~~~~~~~~L~-~L~l~~~~-~~--~~~~~l~~L~~ 726 (761)
+.|+|.+|. ++.++. -.+-.+.+|+.+.+..| +..++ ..+.+|++|+ .+++.+.- .+ ..+.+|++|+.
T Consensus 229 ~~l~L~~n~-i~~I~~-----~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 229 VSLDISKTN-ATTIPD-----FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CEEECTTBC-CCEECT-----TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEE
T ss_pred eEEECCCCC-cceecH-----hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCE
Confidence 888887764 232221 11112334444444444 44433 3577889998 99997621 11 12567889999
Q ss_pred EeeecCCCCcCCCc-ccCCCCCccEEEE
Q 042791 727 LTIWYCPKLKVLPD-YLLQTTALQELRI 753 (761)
Q Consensus 727 L~l~~~~~l~~l~~-~l~~l~~L~~L~l 753 (761)
|++.++. +..++. .+.++++|+.|+.
T Consensus 302 l~l~~n~-i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDK-ITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSC-CCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCc-cCccchhhhcCCcchhhhcc
Confidence 9998775 444444 5778999998863
No 158
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.88 E-value=7.6e-09 Score=100.80 Aligned_cols=177 Identities=12% Similarity=0.066 Sum_probs=105.7
Q ss_pred CCCCceeccc---chHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHH
Q 042791 8 IDEGEVCGRV---DEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIR 84 (761)
Q Consensus 8 ~~~~~~vgr~---~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (761)
..-++|+|++ ..++.+..+.... ..+.++|+|++|+||||+|+++++ ........+.|+.+......
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~~-- 94 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLGIHASI-- 94 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGGGGGGS--
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHHHHHH--
Confidence 4456788743 4555566665432 356889999999999999999998 45444445677766442110
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccC--chhHHHhhcCC-CCC-cEEEEEecchh--
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNK--WQPFFRCLKNG-LHG-SKILVTTRNES-- 158 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~--~~~l~~~~~~~-~~~-~~iiiTtr~~~-- 158 (761)
+... + +.+ .++.++|+||++...... .+.+...+... ..+ .++|+|++...
T Consensus 95 ----~~~~-----------------~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~ 151 (242)
T 3bos_A 95 ----STAL-----------------L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPME 151 (242)
T ss_dssp ----CGGG-----------------G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTT
T ss_pred ----HHHH-----------------H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHH
Confidence 0000 0 011 345689999997643322 33444433321 112 24777776421
Q ss_pred -------hhhhcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHH
Q 042791 159 -------VARMMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIG 221 (761)
Q Consensus 159 -------~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 221 (761)
+...+.....+++.+++.++..+++...+..... ....+....+++.++|.+..+..+.
T Consensus 152 ~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 152 AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL----QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC----CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 1111111257999999999999999987743221 2334567889999999887665543
No 159
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.87 E-value=9.3e-09 Score=96.25 Aligned_cols=153 Identities=13% Similarity=0.128 Sum_probs=86.7
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhc-------cCCeeEEEEecCC
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR-------NFEKVIWVCVSNT 79 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~-------~f~~~~~v~~~~~ 79 (761)
+..-+.++||+++++++.+.+... ..+.++|+|++|+|||++|+++++ .... ....++++.+..
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~- 88 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQ--RIINGEVPEGLKGRRVLALDMGA- 88 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHH--HHHHTCSCGGGTTCEEEEECHHH-
T ss_pred hccccccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHH--HHHhCCCchhhcCCcEEEeeHHH-
Confidence 345567999999999999998743 346789999999999999999997 3322 123344443321
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh--CCceEEEEEeCCCCCC--------ccCchhHHHhhcCCCCCcE
Q 042791 80 FDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSI--KGKKNFLVLDDVWDGD--------YNKWQPFFRCLKNGLHGSK 149 (761)
Q Consensus 80 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~--------~~~~~~l~~~~~~~~~~~~ 149 (761)
+. .. .............+...+ .+++.++||||++... ......+...+.. . ...
T Consensus 89 -----~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~-~-~~~ 153 (195)
T 1jbk_A 89 -----LV-------AG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-G-ELH 153 (195)
T ss_dssp -----HH-------TT-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-T-SCC
T ss_pred -----Hh-------cc-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-C-CeE
Confidence 10 00 000011111112222211 3567899999996632 1122333333322 2 345
Q ss_pred EEEEecchhhh------hhc-CCCCeeecCCCChHHHHHHH
Q 042791 150 ILVTTRNESVA------RMM-GSTDSISIKQLAEEECWSLF 183 (761)
Q Consensus 150 iiiTtr~~~~~------~~~-~~~~~~~l~~l~~~ea~~l~ 183 (761)
+|+||...... ..+ .....+.+.+++.++..+++
T Consensus 154 ~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 154 CVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred EEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 67666654321 111 22336889999988877654
No 160
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=3.4e-08 Score=102.33 Aligned_cols=198 Identities=10% Similarity=0.032 Sum_probs=118.6
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhc--cC-CeeEEEEecCCCCH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR--NF-EKVIWVCVSNTFDQ 82 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~--~f-~~~~~v~~~~~~~~ 82 (761)
+|..-++++|+++.++.+..++.... .+.+.|+|++|+||||+|+++++ .... .+ ..+..+..+.....
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~--~l~~~~~~~~~~~~~~~~~~~~~ 103 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTK--ELYGPDLMKSRILELNASDERGI 103 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHH--HHHHHHHHTTSEEEECSSSCCCH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHH--HhCCCcccccceEEEccccccch
Confidence 44556779999999999999987432 23388999999999999999998 3321 12 22334444433333
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecch-hhhh
Q 042791 83 IRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVAR 161 (761)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~-~~~~ 161 (761)
..+...+.............. .....-...+-++++|+++.........+...+.......++|+++... .+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~ 178 (353)
T 1sxj_D 104 SIVREKVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178 (353)
T ss_dssp HHHTTHHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcc
Confidence 322211111111100000000 0001112456799999997765555666776666555556777776543 2222
Q ss_pred hc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 162 MM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 162 ~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
.+ .....+++.+++.++..+.+...+..... ....+..+.|++.++|.|..+..+
T Consensus 179 ~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~----~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 179 PLASQCSKFRFKALDASNAIDRLRFISEQENV----KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HHHHHSEEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred hhhccCceEEeCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 11 12347899999999999999987643221 223566889999999999764433
No 161
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.85 E-value=1.9e-09 Score=98.51 Aligned_cols=83 Identities=18% Similarity=0.269 Sum_probs=52.5
Q ss_pred CcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccCchh-hhccCCCcEEecCCccCccccccc-cc
Q 042791 427 ACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCRNLRELPAG-IG 504 (761)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~ 504 (761)
++|++|+|++|.+.+ ..|..+..+++|++|++++|.++.+|.. |.++++|++|+|++|. +..+|.. +.
T Consensus 33 ~~L~~L~Ls~N~l~~---------~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~ 102 (174)
T 2r9u_A 33 TDKQRLWLNNNQITK---------LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFD 102 (174)
T ss_dssp TTCSEEECCSSCCCC---------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCCcEEEeCCCCccc---------cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhc
Confidence 566667776555443 2244566677777777777777766654 4667777777777766 3444443 66
Q ss_pred ccccccEeecCCccc
Q 042791 505 KLMNMRTLLNGETYA 519 (761)
Q Consensus 505 ~l~~L~~L~l~~~~~ 519 (761)
.+++|++|++++|.+
T Consensus 103 ~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 103 NLKSLTHIYLYNNPW 117 (174)
T ss_dssp TCTTCSEEECCSSCB
T ss_pred cccCCCEEEeCCCCc
Confidence 677777777777643
No 162
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.81 E-value=3.7e-08 Score=103.75 Aligned_cols=182 Identities=19% Similarity=0.175 Sum_probs=109.4
Q ss_pred CCCCCCceecccchH---HHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC-CC
Q 042791 6 SLIDEGEVCGRVDEK---NELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT-FD 81 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~---~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~-~~ 81 (761)
.+..-+++||.+..+ ..+...+... ..+.+.|+|++|+||||+|+.+++ ..... |+.++.. ..
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~--~~~~~-----f~~l~a~~~~ 87 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIAR--YANAD-----VERISAVTSG 87 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHH--HTTCE-----EEEEETTTCC
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHH--HhCCC-----eEEEEeccCC
Confidence 455667799998888 7777877643 346789999999999999999997 44332 2222221 12
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHH-HHhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEe-cchh-
Q 042791 82 QIRIAKAIIEGLGESASGLNEFQSLMSRIQ-SSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT-RNES- 158 (761)
Q Consensus 82 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTt-r~~~- 158 (761)
...+ +.+. .... .....++.+++||+++.......+.++..+... ...+|.+| .+..
T Consensus 88 ~~~i-r~~~-----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~ 147 (447)
T 3pvs_A 88 VKEI-REAI-----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSF 147 (447)
T ss_dssp HHHH-HHHH-----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGG
T ss_pred HHHH-HHHH-----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCccc
Confidence 2221 1111 1111 112457889999999887666777777777652 23444444 3321
Q ss_pred -hhhh-cCCCCeeecCCCChHHHHHHHHHHhhCCCCC---CCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 159 -VARM-MGSTDSISIKQLAEEECWSLFKQLAFFGCSF---EDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 159 -~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
+... ......+.+.+++.++..+++.+.+...... .......+..+.+++.++|.+..+.-+
T Consensus 148 ~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 148 ELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp SSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred ccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 2111 2234578999999999999999876542111 111234556788888999988655433
No 163
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.75 E-value=8.7e-08 Score=98.38 Aligned_cols=183 Identities=14% Similarity=0.113 Sum_probs=113.0
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHH
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (761)
.+..-++++|++..++++..++...... ......|.|+|++|+|||++|+++++ ..... .+.+.+........
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~---~~~~~~~~~~~~~~- 96 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKKR-NECLDHILFSGPAGLGKTTLANIISY--EMSAN---IKTTAAPMIEKSGD- 96 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHHT-TSCCCCEEEECSTTSSHHHHHHHHHH--HTTCC---EEEEEGGGCCSHHH-
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHhc-CCCCCeEEEECcCCCCHHHHHHHHHH--HhCCC---eEEecchhccchhH-
Confidence 3445567999999999999888754210 12345689999999999999999987 33222 33344332221111
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCC------------------CC
Q 042791 86 AKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL------------------HG 147 (761)
Q Consensus 86 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~------------------~~ 147 (761)
....+.. ..+..+++||+++.........+...+.... ++
T Consensus 97 --------------------~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 97 --------------------LAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp --------------------HHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred --------------------HHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 1111111 2355789999997765555566665554321 12
Q ss_pred cEEEEEecchh-hhhhc-CC-CCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHH
Q 042791 148 SKILVTTRNES-VARMM-GS-TDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIG 221 (761)
Q Consensus 148 ~~iiiTtr~~~-~~~~~-~~-~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 221 (761)
.++|.+|.... +...+ .. ...+++.+++.++..+++...+..... ....+....+++.+.|+|..+..+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 45665555422 11111 12 357999999999999999987743221 2334567888889999996555443
No 164
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.74 E-value=4.7e-08 Score=101.22 Aligned_cols=197 Identities=8% Similarity=0.023 Sum_probs=111.4
Q ss_pred CCCCCCceecccchHHHHHHHH-hcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEE----------
Q 042791 6 SLIDEGEVCGRVDEKNELLSKL-LCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV---------- 74 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l-~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v---------- 74 (761)
+|..-++++|++...+.+.+++ ... ..+. ++|+|++|+||||+|+.++. .+.....+.+++
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~~-----~~~~-~ll~Gp~G~GKTtl~~~la~--~l~~~~~g~i~~~~~~~~~~~~ 80 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQPR-----DLPH-LLLYGPNGTGKKTRCMALLE--SIFGPGVYRLKIDVRQFVTASN 80 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCTT-----CCCC-EEEECSTTSSHHHHHHTHHH--HHSCTTCCC-------------
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhCC-----CCCe-EEEECCCCCCHHHHHHHHHH--HHcCCCCCeEEecceeeccccc
Confidence 4455577999999999998887 422 2234 89999999999999999886 221111111111
Q ss_pred --------------EecCCC-C--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhH
Q 042791 75 --------------CVSNTF-D--QIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPF 137 (761)
Q Consensus 75 --------------~~~~~~-~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l 137 (761)
...... . .....+.++..+.....- .... .+ ..+..++-++|+|+++.-+......+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L 154 (354)
T 1sxj_E 81 RKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SK-DGLAHRYKCVIINEANSLTKDAQAAL 154 (354)
T ss_dssp -----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHH
T ss_pred ccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-cc-cccCCCCeEEEEeCccccCHHHHHHH
Confidence 111000 0 000112222221110000 0000 00 00123567999999977655556667
Q ss_pred HHhhcCCCCCcEEEEEecch-hhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCch-hHHHHHHHHhcCCCc
Q 042791 138 FRCLKNGLHGSKILVTTRNE-SVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKL-EPIGRKIACKCKGLP 214 (761)
Q Consensus 138 ~~~~~~~~~~~~iiiTtr~~-~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~g~P 214 (761)
...+.....+..+|++|.+. .+.+.+ .....+++.+++.++..+++...+..... ... .+.+..|++.++|.+
T Consensus 155 ~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~l~~i~~~~~G~~ 230 (354)
T 1sxj_E 155 RRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI----QLETKDILKRIAQASNGNL 230 (354)
T ss_dssp HHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----EECCSHHHHHHHHHHTTCH
T ss_pred HHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC----CCCcHHHHHHHHHHcCCCH
Confidence 77666555567777777653 222222 23468999999999999999987643211 112 356788999999988
Q ss_pred hhHHHH
Q 042791 215 LAAKVI 220 (761)
Q Consensus 215 lal~~~ 220 (761)
..+..+
T Consensus 231 r~a~~~ 236 (354)
T 1sxj_E 231 RVSLLM 236 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655444
No 165
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=1.3e-07 Score=102.35 Aligned_cols=201 Identities=14% Similarity=0.118 Sum_probs=113.7
Q ss_pred CCCCCceecccchHHHHHHHHhcCCcc-----------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEE
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSE-----------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 75 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~-----------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~ 75 (761)
|..-++++|++..++++.+++...... +.+..+.++|+|++|+||||+|+++++ ... ..++.++
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~--~l~---~~~i~in 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ--ELG---YDILEQN 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH--HTT---CEEEEEC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH--HcC---CCEEEEe
Confidence 445577999999999999998752100 012357899999999999999999997 331 2244555
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCc---hhHHHhhcCCCCCcEEEE
Q 042791 76 VSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKW---QPFFRCLKNGLHGSKILV 152 (761)
Q Consensus 76 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~---~~l~~~~~~~~~~~~iii 152 (761)
++.......+ ...............-...... ......++.+|||||++....... ..+...+... +..||+
T Consensus 110 ~s~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIl 184 (516)
T 1sxj_A 110 ASDVRSKTLL-NAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLIL 184 (516)
T ss_dssp TTSCCCHHHH-HHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEE
T ss_pred CCCcchHHHH-HHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEE
Confidence 5554443322 2222211111000000000000 001135678999999976433222 4444444432 233555
Q ss_pred Eecchh---hhhhcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc-hhHHHHH
Q 042791 153 TTRNES---VARMMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP-LAAKVIG 221 (761)
Q Consensus 153 Ttr~~~---~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~ 221 (761)
++.+.. +.........+++.+++.++..+++...+...... ...+....|++.++|.+ .++..+.
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~----i~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK----LDPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC----CCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 554321 22212234578999999999999998876532221 12345788999999954 4555553
No 166
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.69 E-value=9.2e-08 Score=95.56 Aligned_cols=190 Identities=16% Similarity=0.088 Sum_probs=105.8
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEec
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 77 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (761)
.|.+.-++++|.++.++++.+.+..+-.. +...++.+.|+|++|+|||++|++++. ..... ++.+.+.
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~--~~~~~---~~~v~~~ 85 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT--ETNAT---FIRVVGS 85 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH--HTTCE---EEEEEGG
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCC---EEEEehH
Confidence 34566678999999999999887542000 012346789999999999999999997 33222 2333332
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCcHHHH-HHHHHHHhCCceEEEEEeCCCCC-----------CccCchhHHH---hhc
Q 042791 78 NTFDQIRIAKAIIEGLGESASGLNEFQSL-MSRIQSSIKGKKNFLVLDDVWDG-----------DYNKWQPFFR---CLK 142 (761)
Q Consensus 78 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~LlvlDd~~~~-----------~~~~~~~l~~---~~~ 142 (761)
.... . ........ ...+.......+.+|+|||++.. .......+.. .+.
T Consensus 86 ~~~~--------------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 149 (285)
T 3h4m_A 86 ELVK--------------K--FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMD 149 (285)
T ss_dssp GGCC--------------C--STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH
T ss_pred HHHH--------------h--ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhh
Confidence 2110 0 01111111 12222222345689999999541 1111122222 222
Q ss_pred C--CCCCcEEEEEecchhhhh-hc----CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCC-Cc
Q 042791 143 N--GLHGSKILVTTRNESVAR-MM----GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKG-LP 214 (761)
Q Consensus 143 ~--~~~~~~iiiTtr~~~~~~-~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~P 214 (761)
. ...+..||.||....... .+ .....+.++..+.++..+++...+...... .......+++.+.| .|
T Consensus 150 ~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-----~~~~~~~l~~~~~g~~~ 224 (285)
T 3h4m_A 150 GFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-----EDVNLEEIAKMTEGCVG 224 (285)
T ss_dssp TTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-----TTCCHHHHHHHCTTCCH
T ss_pred CCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-----CcCCHHHHHHHcCCCCH
Confidence 1 223556777776543221 11 123478999999999999999876432211 11125667777777 45
Q ss_pred hhHHHH
Q 042791 215 LAAKVI 220 (761)
Q Consensus 215 lal~~~ 220 (761)
-.+..+
T Consensus 225 ~~i~~l 230 (285)
T 3h4m_A 225 AELKAI 230 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455444
No 167
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.68 E-value=6.3e-07 Score=88.19 Aligned_cols=192 Identities=13% Similarity=0.035 Sum_probs=102.5
Q ss_pred CCCCCCceecccchHHHHHHHHhc---CCc---cCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLC---ESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT 79 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~---~~~---~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (761)
|.+.-++++|.++..+.+.+.+.. +.. .+...++.+.|+|++|+|||++|+++++ .... ..+.+.+...
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~~---~~~~~~~~~~ 75 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQV---PFLAMAGAEF 75 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH--HHTC---CEEEEETTTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH--HhCC---CEEEechHHH
Confidence 345667899999888887765432 110 0013456789999999999999999997 3332 2344444432
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCC------------CccCc---hhHHHhhcCC
Q 042791 80 FDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDG------------DYNKW---QPFFRCLKNG 144 (761)
Q Consensus 80 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~------------~~~~~---~~l~~~~~~~ 144 (761)
.+. ............+.......+.+|+|||++.. ..... ..+...+...
T Consensus 76 ~~~---------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 140 (262)
T 2qz4_A 76 VEV---------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM 140 (262)
T ss_dssp SSS---------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTC
T ss_pred Hhh---------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc
Confidence 110 00001111122222232345789999999652 11112 2233333322
Q ss_pred --CCCcEEEEEecchhhh-hhc----CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCch-h
Q 042791 145 --LHGSKILVTTRNESVA-RMM----GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPL-A 216 (761)
Q Consensus 145 --~~~~~iiiTtr~~~~~-~~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-a 216 (761)
..+..||.||...... ..+ .....+.+...+.++..+++..++...... .........+++.+.|.+- .
T Consensus 141 ~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~---~~~~~~~~~l~~~~~g~~~~~ 217 (262)
T 2qz4_A 141 GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT---QSSTFYSQRLAELTPGFSGAD 217 (262)
T ss_dssp CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC---BTHHHHHHHHHHTCTTCCHHH
T ss_pred CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC---cchhhHHHHHHHHCCCCCHHH
Confidence 2244566666543321 111 123578899999999999998876432211 1112234678888888753 4
Q ss_pred HHHH
Q 042791 217 AKVI 220 (761)
Q Consensus 217 l~~~ 220 (761)
+..+
T Consensus 218 l~~l 221 (262)
T 2qz4_A 218 IANI 221 (262)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.68 E-value=1.8e-07 Score=98.77 Aligned_cols=181 Identities=18% Similarity=0.167 Sum_probs=106.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccC--CeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIK 115 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f--~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 115 (761)
...++|+|++|+||||||+++++ .....+ ..++|+++. .+...+...+... . ...+...++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~----~~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----K----LNEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----C----HHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----c----HHHHHHHhc
Confidence 56789999999999999999998 554443 335566433 3334444433321 1 112333344
Q ss_pred CceEEEEEeCCCCCCc--cCchhHHHhhcC-CCCCcEEEEEecch---------hhhhhcCCCCeeecCCCChHHHHHHH
Q 042791 116 GKKNFLVLDDVWDGDY--NKWQPFFRCLKN-GLHGSKILVTTRNE---------SVARMMGSTDSISIKQLAEEECWSLF 183 (761)
Q Consensus 116 ~~~~LlvlDd~~~~~~--~~~~~l~~~~~~-~~~~~~iiiTtr~~---------~~~~~~~~~~~~~l~~l~~~ea~~l~ 183 (761)
.+.-+++|||++.... ...+.+...+.. ...+..||+||... .+...+.....+++++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3567999999966332 233444444332 22356788888752 12221222357899999999999999
Q ss_pred HHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHHHHHh------hCC-CCHHHHHHHHhh
Q 042791 184 KQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL------RSK-STVKEWQRILES 239 (761)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l------~~~-~~~~~~~~~l~~ 239 (761)
.+.+..... ....+....|++.+.|.+..+.-+...+ .+. -+.+.+..++..
T Consensus 273 ~~~~~~~~~----~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 273 RKMLEIEHG----ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHTC----CCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHcCC----CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 887743211 1223457888999999886654432221 111 345666665554
No 169
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.67 E-value=2.1e-08 Score=91.28 Aligned_cols=102 Identities=16% Similarity=0.018 Sum_probs=82.8
Q ss_pred ccCccccCCcCCccCchhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCCCcccCcee
Q 042791 461 HLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTNLRTLDRFV 540 (761)
Q Consensus 461 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 540 (761)
..+.++++++.++.+|..+ .++|++|+|++|......|..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4578999999999999876 38999999999986555577789999999999999976544444578999999999999
Q ss_pred ecCccCCC-CccCcccccCccCCce
Q 042791 541 VGGGVDGS-NTCRLESLKNLQLRGK 564 (761)
Q Consensus 541 ~~~~~~~~-~~~~l~~L~~L~l~~~ 564 (761)
|.....+. .+..+++|+.|+++++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCC
Confidence 88776665 3667778888877764
No 170
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.67 E-value=4.3e-07 Score=92.52 Aligned_cols=169 Identities=9% Similarity=0.054 Sum_probs=105.9
Q ss_pred cchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC---------------------CeeEEEE
Q 042791 17 VDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF---------------------EKVIWVC 75 (761)
Q Consensus 17 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f---------------------~~~~~v~ 75 (761)
++..+.+.+.+... .-++.+.++|++|+|||++|+.+++ .+.... ..+.++.
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~--~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~ 80 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSR--YLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLA 80 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHH--HHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEEC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHH--HHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe
Confidence 45556677766532 2356799999999999999999987 332211 1122221
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEE
Q 042791 76 VSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKI 150 (761)
Q Consensus 76 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~i 150 (761)
... .......+.+.+ +.+.+ .+++-++|+|+++.......+.++..+......+.+
T Consensus 81 ~~~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~ 141 (334)
T 1a5t_A 81 PEK------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWF 141 (334)
T ss_dssp CCT------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEE
T ss_pred ccc------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEE
Confidence 110 001112222222 22222 246789999999876666677788877765556677
Q ss_pred EEEecch-hhhhhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 151 LVTTRNE-SVARMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 151 iiTtr~~-~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
|++|.+. .+.+.+ .....+++.++++++..+++...+ ....+.+..+++.++|.|..+..+
T Consensus 142 Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---------~~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 142 FLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---------TMSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---------CCCHHHHHHHHHHTTTCHHHHHHT
T ss_pred EEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 7776653 333332 345689999999999999998865 112345678999999999765443
No 171
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.66 E-value=1.4e-07 Score=98.18 Aligned_cols=199 Identities=13% Similarity=0.083 Sum_probs=109.7
Q ss_pred CCceecccchHHHH---HHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEec----CCCCH
Q 042791 10 EGEVCGRVDEKNEL---LSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS----NTFDQ 82 (761)
Q Consensus 10 ~~~~vgr~~~~~~l---~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~----~~~~~ 82 (761)
.++|||++...+.+ .+.+.... ...+.++|+|++|+|||++|+++++ ....... .+.+.+. .....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~--~l~~~~~-~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQ--ALGPDTP-FTAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHH--HHCSSCC-EEEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHH--HhcccCC-cccccchhhhhcccch
Confidence 56799999987764 44444322 2246899999999999999999997 4433222 2223321 12233
Q ss_pred HHHHHHHHHHhcC---------------------C-------CCC-----CCcHHHHHHHHHHHh--CCc----eEEEEE
Q 042791 83 IRIAKAIIEGLGE---------------------S-------ASG-----LNEFQSLMSRIQSSI--KGK----KNFLVL 123 (761)
Q Consensus 83 ~~~~~~i~~~l~~---------------------~-------~~~-----~~~~~~~~~~~~~~l--~~~----~~Llvl 123 (761)
............. . ... ............... .++ +.+++|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 3333333332110 0 000 111111122111111 122 359999
Q ss_pred eCCCCCCccCchhHHHhhcCCCCCcEEEEEec-------------chhhhhh-cCCCCeeecCCCChHHHHHHHHHHhhC
Q 042791 124 DDVWDGDYNKWQPFFRCLKNGLHGSKILVTTR-------------NESVARM-MGSTDSISIKQLAEEECWSLFKQLAFF 189 (761)
Q Consensus 124 Dd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr-------------~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~ 189 (761)
|+++......+..+...+....... +++++. ...+... ......+.+.+++.++..+++...+..
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH
Confidence 9998765556666666665543333 444442 1111111 122345899999999999999987754
Q ss_pred CCCCCCCCchhHHHHHHHHhcC-CCchhHHHH
Q 042791 190 GCSFEDCEKLEPIGRKIACKCK-GLPLAAKVI 220 (761)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~~~~-g~Plal~~~ 220 (761)
... ....+....+++.+. |.|..+..+
T Consensus 275 ~~~----~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 275 EDV----EMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp TTC----CBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCC----CCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 221 233456788888887 777655444
No 172
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.63 E-value=3.4e-07 Score=93.24 Aligned_cols=185 Identities=18% Similarity=0.110 Sum_probs=102.9
Q ss_pred cCCCCCCcee-ccc--chHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCC
Q 042791 5 ISLIDEGEVC-GRV--DEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFD 81 (761)
Q Consensus 5 ~~~~~~~~~v-gr~--~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~ 81 (761)
.+...-+.|| |.. .....+......+ ......++|+|++|+||||+|+++++ .....-..++++++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~----~~~~~~lll~G~~GtGKT~la~~i~~--~~~~~~~~~~~i~~~---- 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL----GSLYNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIYSSAD---- 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT----TTSCSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEEEEHH----
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc----CCCCCeEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEEEEHH----
Confidence 3444556676 532 2334444544432 12345789999999999999999998 443332345666543
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCc--cCchhHHHhhcC-CCCCcEEEEEecch-
Q 042791 82 QIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDY--NKWQPFFRCLKN-GLHGSKILVTTRNE- 157 (761)
Q Consensus 82 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~--~~~~~l~~~~~~-~~~~~~iiiTtr~~- 157 (761)
.+...+...+... .... +..... +..++++||++.... .....+...+.. ...+.++|+|+...
T Consensus 75 --~~~~~~~~~~~~~-----~~~~----~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 75 --DFAQAMVEHLKKG-----TINE----FRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp --HHHHHHHHHHHHT-----CHHH----HHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred --HHHHHHHHHHHcC-----cHHH----HHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 2333333332211 1111 222222 356999999966332 223334333322 12355688877532
Q ss_pred --------hhhhhcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhH
Q 042791 158 --------SVARMMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAA 217 (761)
Q Consensus 158 --------~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 217 (761)
.+...+.....+++++ +.++..+++...+..... ....+....+++.+ |..-.+
T Consensus 143 ~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~----~l~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 143 QKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL----ELRKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp GGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHC-SSHHHH
T ss_pred HHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHhC-CCHHHH
Confidence 1221122235689999 999999999988753221 22345678888888 876543
No 173
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.63 E-value=2.7e-07 Score=94.04 Aligned_cols=178 Identities=13% Similarity=0.099 Sum_probs=107.3
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHH
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIA 86 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 86 (761)
|..-++++|+++.++.+.+++... ..+..+++.|++|+|||++|+++++ ... ..+++++++.. ....+.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~--~l~---~~~~~i~~~~~-~~~~i~ 90 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCH--DVN---ADMMFVNGSDC-KIDFVR 90 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHH--HTT---EEEEEEETTTC-CHHHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHH--HhC---CCEEEEccccc-CHHHHH
Confidence 445578999999999999999843 2356788889999999999999997 332 22445554332 222221
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHH--hCCceEEEEEeCCCCCC-ccCchhHHHhhcCCCCCcEEEEEecchh-hhhh
Q 042791 87 KAIIEGLGESASGLNEFQSLMSRIQSS--IKGKKNFLVLDDVWDGD-YNKWQPFFRCLKNGLHGSKILVTTRNES-VARM 162 (761)
Q Consensus 87 ~~i~~~l~~~~~~~~~~~~~~~~~~~~--l~~~~~LlvlDd~~~~~-~~~~~~l~~~~~~~~~~~~iiiTtr~~~-~~~~ 162 (761)
..... .... ..+++.++|+||++... ....+.+...+.......++|+||.... +...
T Consensus 91 -~~~~~-----------------~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~ 152 (324)
T 3u61_B 91 -GPLTN-----------------FASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKP 152 (324)
T ss_dssp -THHHH-----------------HHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTT
T ss_pred -HHHHH-----------------HHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHH
Confidence 11111 1111 12467899999997654 4455566665554444567888776532 2111
Q ss_pred c-CCCCeeecCCCChHHHHHHH-------HHHhhCCCCCCCCCchh-HHHHHHHHhcCCCchhH
Q 042791 163 M-GSTDSISIKQLAEEECWSLF-------KQLAFFGCSFEDCEKLE-PIGRKIACKCKGLPLAA 217 (761)
Q Consensus 163 ~-~~~~~~~l~~l~~~ea~~l~-------~~~~~~~~~~~~~~~~~-~~~~~i~~~~~g~Plal 217 (761)
+ .....+++++++.++..+++ ...+..... .... +....+++.++|.+..+
T Consensus 153 l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~----~~~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 153 LQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI----AIADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp HHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC----CBSCHHHHHHHHHHTCSCTTHH
T ss_pred HHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC----CCCcHHHHHHHHHhCCCCHHHH
Confidence 1 12357899999988854332 222221111 1223 56788888898877643
No 174
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.59 E-value=5.1e-09 Score=108.33 Aligned_cols=159 Identities=14% Similarity=0.065 Sum_probs=94.3
Q ss_pred ceEEEEEeecCCCCCc-----cccc-CCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccc
Q 042791 375 KVRHLGLNFQRGASFP-----MSFF-EFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANR 448 (761)
Q Consensus 375 ~~~~l~~~~~~~~~~~-----~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 448 (761)
.++.++++.+.+.... ..+. .+++|+.|+|++|.+. ......+...+++|+.|+|++|.++. ..
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~-----~~~~~~l~~~L~~L~~L~Ls~n~l~~-----~~ 142 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD-----PAGLRTLLPVFLRARKLGLQLNSLGP-----EA 142 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC-----HHHHHHTHHHHHTEEEEECCSSCCCH-----HH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC-----HHHHHHHHHHHHhccHhhcCCCCCCH-----HH
Confidence 4556666666654321 1222 2367888888777642 23333334556678888888776652 22
Q ss_pred ccccccch-hcccccCccccCCcCCcc-----CchhhhccCCCcEEecCCccCcc----cccccccccccccEeecCCcc
Q 042791 449 IKEIPENV-GKLIHLKYLNLSELGIER-----LPETLCELYNLQKLDIRRCRNLR----ELPAGIGKLMNMRTLLNGETY 518 (761)
Q Consensus 449 l~~lp~~~-~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~ 518 (761)
...+...+ ...++|++|++++|.++. ++..+..+++|++|+|++|.... .++..+...++|++|++++|.
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 22333333 235678888888887753 44555677788888888877432 234556667778888888876
Q ss_pred ccc----cccccCCCCCCCcccCceeecC
Q 042791 519 ALK----YMPIGISKLTNLRTLDRFVVGG 543 (761)
Q Consensus 519 ~~~----~~p~~l~~l~~L~~L~l~~~~~ 543 (761)
+.. .++..+...++|+.|++++|..
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 543 2333344556677777766653
No 175
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.58 E-value=1.7e-07 Score=97.97 Aligned_cols=35 Identities=11% Similarity=0.032 Sum_probs=19.8
Q ss_pred ccccCCccceeeccccccccc----CCCCC-ccceEeeecC
Q 042791 697 NIIAFPKLKYLKIWATEELEE----TTDIP-RLSSLTIWYC 732 (761)
Q Consensus 697 ~~~~~~~L~~L~l~~~~~~~~----~~~l~-~L~~L~l~~~ 732 (761)
.+.++ +|+.+++.++..... +.+++ +++.|.+..+
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 35566 777777776644332 22343 5666666554
No 176
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.57 E-value=9.3e-07 Score=87.37 Aligned_cols=172 Identities=20% Similarity=0.198 Sum_probs=92.7
Q ss_pred CceecccchHHHHHH-------HHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHH
Q 042791 11 GEVCGRVDEKNELLS-------KLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQI 83 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~-------~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (761)
..++|....++++.. .+.... ....+.+.|+|++|+|||++|+++++ ... .. .+.+.+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~--~~~--~~-~~~i~~~~~---- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAE--ESN--FP-FIKICSPDK---- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHH--HHT--CS-EEEEECGGG----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHH--HhC--CC-EEEEeCHHH----
Confidence 457888887776665 232111 34568899999999999999999997 332 22 223333221
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCC------CccCc----hhHHHhhcC---CCCCcEE
Q 042791 84 RIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDG------DYNKW----QPFFRCLKN---GLHGSKI 150 (761)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~------~~~~~----~~l~~~~~~---~~~~~~i 150 (761)
+... ............+.........+|+|||++.. ..... ..+...+.. ......|
T Consensus 101 ---------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ---------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 1000 00000111222233333466889999998541 11111 223332322 1122346
Q ss_pred EEEecchhhhhh---cCC-CCeeecCCCCh-HHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCC
Q 042791 151 LVTTRNESVARM---MGS-TDSISIKQLAE-EECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGL 213 (761)
Q Consensus 151 iiTtr~~~~~~~---~~~-~~~~~l~~l~~-~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 213 (761)
|.||........ ... ...+++++++. ++..+++.... ....+....+++.+.|.
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---------~~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---------NFKDKERTTIAQQVKGK 229 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---------CSCHHHHHHHHHHHTTS
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---------CCCHHHHHHHHHHhcCC
Confidence 666766544332 111 45688999988 66666665531 11244577888888873
No 177
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.55 E-value=9.9e-07 Score=89.39 Aligned_cols=193 Identities=15% Similarity=0.078 Sum_probs=109.2
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCC------ccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCES------SEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~------~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
.|.+.-++++|.++..+.+.+.+..+. .......+.|.|+|++|+|||++|+++++ ..... ++.+.+.
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~---~~~v~~~- 85 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANST---FFSVSSS- 85 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCE---EEEEEHH-
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCC---EEEEchH-
Confidence 456667789999999999998872110 00122356789999999999999999997 43322 2333321
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHH-HHHhCCceEEEEEeCCCCCCcc-----------CchhHHHhhcC---
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMSRI-QSSIKGKKNFLVLDDVWDGDYN-----------KWQPFFRCLKN--- 143 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~l~~~~~LlvlDd~~~~~~~-----------~~~~l~~~~~~--- 143 (761)
++. ... ..........+ .......+.+|+||+++..... ....+...+..
T Consensus 86 -----~l~----~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 86 -----DLV----SKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp -----HHH----TTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT
T ss_pred -----HHh----hcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc
Confidence 111 100 01122222222 2222346689999999652110 02333333332
Q ss_pred CCCCcEEEEEecchhhhh-hc--CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCC-CchhHHH
Q 042791 144 GLHGSKILVTTRNESVAR-MM--GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKG-LPLAAKV 219 (761)
Q Consensus 144 ~~~~~~iiiTtr~~~~~~-~~--~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~ 219 (761)
...+..||.||....... .+ .....+.+...+.++..+++..++..... .........+++.+.| .+-.|..
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~l~~la~~t~g~sg~di~~ 226 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC----VLTKEDYRTLGAMTEGYSGSDIAV 226 (322)
T ss_dssp SCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC----CCCHHHHHHHHHTTTTCCHHHHHH
T ss_pred cCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC----CCCHHHHHHHHHHcCCCCHHHHHH
Confidence 223455665665432211 11 12456889999999999999988743211 1123456788888887 4545554
Q ss_pred HHH
Q 042791 220 IGN 222 (761)
Q Consensus 220 ~~~ 222 (761)
+..
T Consensus 227 l~~ 229 (322)
T 3eie_A 227 VVK 229 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 178
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.55 E-value=8.2e-08 Score=84.52 Aligned_cols=114 Identities=14% Similarity=0.049 Sum_probs=71.8
Q ss_pred ceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHH
Q 042791 12 EVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIE 91 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~ 91 (761)
+++|+...++++.+.+..... ....|.|+|++|+|||++|+++++. ....-...+ +++....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~--~~~~~~~~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQF--GRNAQGEFV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHS--STTTTSCCE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHh--CCccCCCEE-EECCCCCcc---------
Confidence 589999999999988765431 2345889999999999999999973 222222233 666543222
Q ss_pred HhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc
Q 042791 92 GLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN 156 (761)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~ 156 (761)
..... .+... +.-.+++|+++.-.......+...+.......++|.||..
T Consensus 66 ---------~~~~~---~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQLND---FIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCHHH---HHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhhhc---HHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 11111 11111 2246899999887666667777777555555677777764
No 179
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.54 E-value=5.2e-07 Score=92.45 Aligned_cols=180 Identities=12% Similarity=0.061 Sum_probs=109.0
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-CC-eeEEEEecCCCCHHH
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-FE-KVIWVCVSNTFDQIR 84 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f~-~~~~v~~~~~~~~~~ 84 (761)
|..-++++|.+..++.+...+... +...++++|++|+||||+|++++. .+... +. .+..++.+.......
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~~~~~~~~~~~~~ 92 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAR--EIYGKNYSNMVLELNASDDRGIDV 92 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHH--HHHTTSHHHHEEEECTTSCCSHHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHH--HHcCCCccceEEEEcCcccccHHH
Confidence 334456889999999999888743 222388999999999999999997 33221 11 122222222212221
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHH---hCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecch-hhh
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSS---IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVA 160 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~---l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~-~~~ 160 (761)
+. ... ..+.+. ..+.+-++|+|+++.......+.+...+.......++|+++... .+.
T Consensus 93 ir-~~i-----------------~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~ 154 (340)
T 1sxj_C 93 VR-NQI-----------------KDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLT 154 (340)
T ss_dssp HH-THH-----------------HHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred HH-HHH-----------------HHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccc
Confidence 11 111 111110 12346789999997765555666766666554556677766543 222
Q ss_pred hhc-CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchh
Q 042791 161 RMM-GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLA 216 (761)
Q Consensus 161 ~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 216 (761)
+.+ .....+++.++++++..+.+...+..... ...++..+.+++.++|.+--
T Consensus 155 ~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~----~i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 155 PALLSQCTRFRFQPLPQEAIERRIANVLVHEKL----KLSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTC----CBCHHHHHHHHHHHTTCHHH
T ss_pred hhHHhhceeEeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 221 23457899999999999998876632211 12345678888999988764
No 180
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.53 E-value=3.9e-06 Score=84.74 Aligned_cols=192 Identities=18% Similarity=0.140 Sum_probs=108.2
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCC------ccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCES------SEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~------~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
.|.+.-++++|.++..+.+.+.+..+- ......++.|.|+|++|+|||++|+++++ ... -...+.+.+..
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~--~~~~~~i~~~~ 81 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT--EAN--NSTFFSISSSD 81 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH--HTT--SCEEEEEECCS
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH--HcC--CCcEEEEEhHH
Confidence 456677889999999988887763210 00012347889999999999999999997 331 11233344332
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHH-HHHhCCceEEEEEeCCCCCCc------cC-----chhHHHhhcCC--
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMSRI-QSSIKGKKNFLVLDDVWDGDY------NK-----WQPFFRCLKNG-- 144 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~l~~~~~LlvlDd~~~~~~------~~-----~~~l~~~~~~~-- 144 (761)
..+ .. ....+.....+ ...-...+.+|+||+++.... .. ...++..+...
T Consensus 82 l~~--------------~~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 145 (322)
T 1xwi_A 82 LVS--------------KW--LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV 145 (322)
T ss_dssp SCC--------------SS--CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS
T ss_pred HHh--------------hh--hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc
Confidence 111 00 01112222222 222235678999999965210 00 12223333321
Q ss_pred -CCCcEEEEEecch-----hhhhhcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCC-chhH
Q 042791 145 -LHGSKILVTTRNE-----SVARMMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGL-PLAA 217 (761)
Q Consensus 145 -~~~~~iiiTtr~~-----~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal 217 (761)
..+..||.||... .+.. .....+.+...+.++..+++..++..... .........|++.+.|. +-.|
T Consensus 146 ~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~~~l~~la~~t~G~sgadl 219 (322)
T 1xwi_A 146 DNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQN----SLTEADFRELGRKTDGYSGADI 219 (322)
T ss_dssp CCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCB----CCCHHHHHHHHHTCTTCCHHHH
T ss_pred cCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHcCCCCHHHH
Confidence 2334455555433 2222 22357889999999999999887633211 11234578899999887 5456
Q ss_pred HHHHH
Q 042791 218 KVIGN 222 (761)
Q Consensus 218 ~~~~~ 222 (761)
..+..
T Consensus 220 ~~l~~ 224 (322)
T 1xwi_A 220 SIIVR 224 (322)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 181
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.52 E-value=8.5e-08 Score=98.96 Aligned_cols=86 Identities=14% Similarity=0.154 Sum_probs=48.4
Q ss_pred hccCCcceEEeecc-ccccCCccccccccccc-cchhcccccCccccCCcCCccCch-hhhccCCCcEEecCCccCcccc
Q 042791 423 FSKLACLRALVISQ-FYISGSHHEANRIKEIP-ENVGKLIHLKYLNLSELGIERLPE-TLCELYNLQKLDIRRCRNLREL 499 (761)
Q Consensus 423 ~~~~~~L~~L~l~~-~~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l 499 (761)
+..+++|+.|+|++ |.+. .+| ..|..+++|++|+|++|.++.+|. .|.++++|++|+|++|. +..+
T Consensus 27 l~~~~~L~~L~l~~~n~l~----------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~ 95 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQ----------HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESL 95 (347)
T ss_dssp SCSCSCCSEEECCSCSSCC----------EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCC
T ss_pred CCCCCCeeEEEccCCCCCC----------CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-ccee
Confidence 55666666666663 4433 333 345666666666666666665443 45666666666666665 3344
Q ss_pred cccccccccccEeecCCccc
Q 042791 500 PAGIGKLMNMRTLLNGETYA 519 (761)
Q Consensus 500 p~~~~~l~~L~~L~l~~~~~ 519 (761)
|..+....+|++|++.+|.+
T Consensus 96 ~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 96 SWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CSTTTCSCCCCEEECCSSCC
T ss_pred CHHHcccCCceEEEeeCCCc
Confidence 44332222366666666643
No 182
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.51 E-value=4.1e-07 Score=95.49 Aligned_cols=61 Identities=18% Similarity=0.124 Sum_probs=38.6
Q ss_pred ccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccc-cchhcccccCccccCC
Q 042791 391 MSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIP-ENVGKLIHLKYLNLSE 469 (761)
Q Consensus 391 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~l~~ 469 (761)
.+|.+|.+|+.+.|..+ + ..+...+|.+|.+|+.+++..+ ++.++ ..+..+..|+.+.+..
T Consensus 65 ~AF~~c~~L~~i~lp~~-i------~~I~~~aF~~c~~L~~i~lp~~-----------l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-V------REIGEFAFENCSKLEIINIPDS-----------VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTTTTCTTEEEEECCTT-C------CEECTTTTTTCTTCCEECCCTT-----------CCEECTTTTTTCTTCCCCCCCT
T ss_pred HHhhCCCCceEEEeCCC-c------cCcchhHhhCCCCCcEEEeCCC-----------ceEccchhhcccccchhhcccC
Confidence 37888999999988643 1 2333455888999999988642 22332 2355666666655543
No 183
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.50 E-value=2.5e-07 Score=85.75 Aligned_cols=46 Identities=24% Similarity=0.178 Sum_probs=39.7
Q ss_pred CCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 9 DEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 9 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.-++++||+.+++.+.+.+... ..+.++|+|++|+|||++|+++++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999743 245788999999999999999997
No 184
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.50 E-value=2.4e-06 Score=87.62 Aligned_cols=191 Identities=16% Similarity=0.082 Sum_probs=106.6
Q ss_pred cCCCCCCceecccchHHHHHHHHhcC----C--ccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCE----S--SEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~----~--~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
.|.+.-++++|.++..+.+.+.+..+ . .......+.|+|+|++|+|||++|+++++ ..... .+.+.+.
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~---~~~v~~~- 118 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANST---FFSVSSS- 118 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH--HHTCE---EEEEEHH-
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCC---EEEeeHH-
Confidence 34566678999999999999876321 0 00012345688999999999999999998 44322 2333222
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHH-HHHhCCceEEEEEeCCCCCCcc-----------CchhHHHhhcCC--
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMSRI-QSSIKGKKNFLVLDDVWDGDYN-----------KWQPFFRCLKNG-- 144 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~l~~~~~LlvlDd~~~~~~~-----------~~~~l~~~~~~~-- 144 (761)
++. .... ...+.....+ .......+.+|+||+++..... ....++..+...
T Consensus 119 -----~l~----~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~ 183 (355)
T 2qp9_X 119 -----DLV----SKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 183 (355)
T ss_dssp -----HHH----SCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-
T ss_pred -----HHh----hhhc------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccc
Confidence 111 1110 0111222222 2222356789999999652211 023333333321
Q ss_pred -CCCcEEEEEecchh-----hhhhcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCC-CchhH
Q 042791 145 -LHGSKILVTTRNES-----VARMMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKG-LPLAA 217 (761)
Q Consensus 145 -~~~~~iiiTtr~~~-----~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal 217 (761)
..+..||.||.... +.. .....+.+...+.++..+++..++..... .........|++.+.| .+-.|
T Consensus 184 ~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~----~~~~~~l~~la~~t~G~sg~dl 257 (355)
T 2qp9_X 184 DSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPS----VLTKEDYRTLGAMTEGYSGSDI 257 (355)
T ss_dssp --CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCB----CCCHHHHHHHHHHTTTCCHHHH
T ss_pred cCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCC----CCCHHHHHHHHHHcCCCCHHHH
Confidence 23445555665432 222 23457889999999999999987743211 1123456788888888 45556
Q ss_pred HHHHH
Q 042791 218 KVIGN 222 (761)
Q Consensus 218 ~~~~~ 222 (761)
..+..
T Consensus 258 ~~l~~ 262 (355)
T 2qp9_X 258 AVVVK 262 (355)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 185
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.47 E-value=8e-06 Score=82.99 Aligned_cols=209 Identities=14% Similarity=0.057 Sum_probs=114.7
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
|.+.-+++.|-++..++|.+.+.-+-.+ +-..++-|.++||||+|||.+|++++. +.... .+.+..+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~---f~~v~~s~ 217 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCK---FIRVSGAE 217 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCE---EEEEEGGG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCC---ceEEEhHH
Confidence 5566677889999988888765431100 123456788999999999999999998 44333 23343332
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHH-HHHHhCCceEEEEEeCCCCCCc-----c---------CchhHHHhhcC
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMSR-IQSSIKGKKNFLVLDDVWDGDY-----N---------KWQPFFRCLKN 143 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~LlvlDd~~~~~~-----~---------~~~~l~~~~~~ 143 (761)
..+ . ...+.+..+.. +...-...+.+|+||++|.... . ....++..+..
T Consensus 218 l~s--------------k--~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 218 LVQ--------------K--YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp GSC--------------S--STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred hhc--------------c--ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 111 0 01111222222 2222245689999999965110 0 11223333433
Q ss_pred C--CCCcEEEEEecch-----hhhhhcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCch-
Q 042791 144 G--LHGSKILVTTRNE-----SVARMMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPL- 215 (761)
Q Consensus 144 ~--~~~~~iiiTtr~~-----~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl- 215 (761)
. ..+..||.||... .+.+.-..+..++++..+.++..++|..+..+.... ... ....+++.+.|.--
T Consensus 282 ~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dv----dl~~lA~~t~G~SGA 356 (405)
T 4b4t_J 282 FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGI----NLRKVAEKMNGCSGA 356 (405)
T ss_dssp TTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSC----CHHHHHHHCCSCCHH
T ss_pred cCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccC----CHHHHHHHCCCCCHH
Confidence 2 2334455565543 333221346789999999999999998876432111 111 14667888877542
Q ss_pred hHHHH-----HHHhhCC---CCHHHHHHHHhhh
Q 042791 216 AAKVI-----GNLLRSK---STVKEWQRILESE 240 (761)
Q Consensus 216 al~~~-----~~~l~~~---~~~~~~~~~l~~~ 240 (761)
-|..+ ..++++. -+.+++..+++..
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGKV 389 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 22222 1233333 2466776666543
No 186
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.47 E-value=2.5e-06 Score=89.00 Aligned_cols=59 Identities=10% Similarity=0.025 Sum_probs=39.1
Q ss_pred ccccCCccceeecccccc-cc--cCCCCCccceEeeecCCCCcCCCcccCCCC-CccEEEEecC
Q 042791 697 NIIAFPKLKYLKIWATEE-LE--ETTDIPRLSSLTIWYCPKLKVLPDYLLQTT-ALQELRIWGC 756 (761)
Q Consensus 697 ~~~~~~~L~~L~l~~~~~-~~--~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~-~L~~L~l~~c 756 (761)
.+.+|++|+.+.|..+-. +. .+..+ +|+.+.+.+|......+..+..++ .++.|++-.+
T Consensus 318 aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 318 LLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred hhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 467889999999965411 11 15567 999999999864443333455553 6788887654
No 187
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.47 E-value=1.3e-07 Score=97.65 Aligned_cols=103 Identities=20% Similarity=0.082 Sum_probs=83.0
Q ss_pred EEEEeec-CCCCCcccccCCCceeEEEEcc-cCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccc
Q 042791 378 HLGLNFQ-RGASFPMSFFEFDRLRSLLIYD-RSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPEN 455 (761)
Q Consensus 378 ~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~ 455 (761)
.+..+.+ .+..+|. +..+++|+.|+|++ |.+ ..+++..|.++++|+.|+|++|.+.+ ..|..
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l------~~~~~~~~~~l~~L~~L~l~~N~l~~---------~~~~~ 75 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHL------QHLELRDLRGLGELRNLTIVKSGLRF---------VAPDA 75 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSC------CEECGGGSCSCCCCSEEECCSSCCCE---------ECTTG
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCC------CCcChhHhccccCCCEEECCCCccce---------eCHHH
Confidence 3455666 7888998 99999999999996 775 34455558899999999999877765 34557
Q ss_pred hhcccccCccccCCcCCccCchhhhccCCCcEEecCCccCc
Q 042791 456 VGKLIHLKYLNLSELGIERLPETLCELYNLQKLDIRRCRNL 496 (761)
Q Consensus 456 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~ 496 (761)
|..+++|++|+|++|.++.+|..+.....|+.|+|++|...
T Consensus 76 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 76 FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp GGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred hcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 89999999999999999999876554445999999998743
No 188
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.45 E-value=1.3e-06 Score=86.92 Aligned_cols=149 Identities=14% Similarity=0.057 Sum_probs=96.3
Q ss_pred cccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChh-hhccCCeeEEEEecC-CCCHHHHHHHHHHH
Q 042791 15 GRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDE-VKRNFEKVIWVCVSN-TFDQIRIAKAIIEG 92 (761)
Q Consensus 15 gr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~-~~~~f~~~~~v~~~~-~~~~~~~~~~i~~~ 92 (761)
|.++.++.+.+.+... +.+...++|++|+||||+|+.+++.-. .......+.++.... ....+.+ +.+.+.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHH
Confidence 5567778888888643 257889999999999999999986200 111122344444332 2222222 223333
Q ss_pred hcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecc-hhhhhhcCCCCeeec
Q 042791 93 LGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVARMMGSTDSISI 171 (761)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~-~~~~~~~~~~~~~~l 171 (761)
+.... ..+++-++|+|+++.......+.++..+....+.+.+|++|.+ ..+.+.+... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 32111 1245679999999887777788888888876667777776654 3455444444 8999
Q ss_pred CCCChHHHHHHHHHHh
Q 042791 172 KQLAEEECWSLFKQLA 187 (761)
Q Consensus 172 ~~l~~~ea~~l~~~~~ 187 (761)
.++++++..+.+.+.+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998876
No 189
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.44 E-value=2.9e-06 Score=84.99 Aligned_cols=187 Identities=16% Similarity=0.070 Sum_probs=104.6
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCc-------cCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEec
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESS-------EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 77 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (761)
.|.+.-++++|.++..+.+.+.+..+-. .+-..++.|.|+|++|+|||++|++++. .... ..+.+
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~~---~~i~v--- 80 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQA---NFISI--- 80 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTTC---EEEEE---
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhCC---CEEEE---
Confidence 4556667899999999988887753200 0012356789999999999999999997 3332 22233
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCC--------------ccCchhHHHhhcC
Q 042791 78 NTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGD--------------YNKWQPFFRCLKN 143 (761)
Q Consensus 78 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~--------------~~~~~~l~~~~~~ 143 (761)
+..++.... .+.. .. .....+.......+.++++|+++... ......++..+..
T Consensus 81 ---~~~~l~~~~---~g~~---~~---~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~ 148 (301)
T 3cf0_A 81 ---KGPELLTMW---FGES---EA---NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148 (301)
T ss_dssp ---CHHHHHHHH---HTTC---TT---HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred ---EhHHHHhhh---cCch---HH---HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence 222332221 1211 11 12222333333467899999996410 0012344444432
Q ss_pred C--CCCcEEEEEecchhhh-hhc----CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchh
Q 042791 144 G--LHGSKILVTTRNESVA-RMM----GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLA 216 (761)
Q Consensus 144 ~--~~~~~iiiTtr~~~~~-~~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 216 (761)
. ..+..||.||...... ..+ .....+.+...+.++..+++...+..... .... ....++..+.|.|-+
T Consensus 149 ~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~----~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 149 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDV----DLEFLAKMTNGFSGA 223 (301)
T ss_dssp SCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSC----CHHHHHHTCSSCCHH
T ss_pred ccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-Cccc----hHHHHHHHcCCCCHH
Confidence 2 2345666666654322 111 12357899999999999999887643211 1111 134566677777643
No 190
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.41 E-value=2.4e-06 Score=86.28 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=91.2
Q ss_pred ceecccchHHHHHHHHhcCC---------ccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC--C--eeEEEEecC
Q 042791 12 EVCGRVDEKNELLSKLLCES---------SEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF--E--KVIWVCVSN 78 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~~~~---------~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f--~--~~~~v~~~~ 78 (761)
+++|.++..+.+.+.+.... -........++|+|++|+|||++|+++++ ...... . .++.+....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~--~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG--LLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH--HHHHTTSSSSCCEEEECGGG
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCcCCCcEEEEcHHH
Confidence 48899888888886654210 00012345789999999999999999997 343221 1 233333211
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCC---------CccCchhHHHhhcCCCCCcE
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDG---------DYNKWQPFFRCLKNGLHGSK 149 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~---------~~~~~~~l~~~~~~~~~~~~ 149 (761)
+..... ..........+... +.-+|+||+++.. ....+..+...+.....+..
T Consensus 110 --------------l~~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 110 --------------LVGQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV 171 (309)
T ss_dssp --------------TCCSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred --------------hhhhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence 111110 01111222222222 2349999999742 33344566666666555667
Q ss_pred EEEEecchhhh------hhc-C-CCCeeecCCCChHHHHHHHHHHhhC
Q 042791 150 ILVTTRNESVA------RMM-G-STDSISIKQLAEEECWSLFKQLAFF 189 (761)
Q Consensus 150 iiiTtr~~~~~------~~~-~-~~~~~~l~~l~~~ea~~l~~~~~~~ 189 (761)
+|+||...... +.+ . ....+++++++.++..+++...+..
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 77777543211 111 0 1267899999999999999887753
No 191
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.41 E-value=6.4e-06 Score=82.58 Aligned_cols=190 Identities=15% Similarity=0.089 Sum_probs=106.3
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCc------cCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESS------EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~------~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
.+.+.-++++|.+...+.+.+.+..+.. ......+.+.|+|++|+||||+|++++. .... ..+.+.+..
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~--~~~~---~~~~i~~~~ 89 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT--ECSA---TFLNISAAS 89 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH--HTTC---EEEEEESTT
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HhCC---CeEEeeHHH
Confidence 3556667899999999999988743110 0012356889999999999999999997 3322 233344332
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHH-HHHhCCceEEEEEeCCCCCCcc-----------CchhHHHhhcCCC-
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMSRI-QSSIKGKKNFLVLDDVWDGDYN-----------KWQPFFRCLKNGL- 145 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~l~~~~~LlvlDd~~~~~~~-----------~~~~l~~~~~~~~- 145 (761)
... .. ..........+ .......+.+|++|+++..... ....++..+....
T Consensus 90 l~~--------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 153 (297)
T 3b9p_A 90 LTS--------------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPG 153 (297)
T ss_dssp TSS--------------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-
T ss_pred Hhh--------------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccc
Confidence 111 00 11112222222 2222346789999999652111 0112222222211
Q ss_pred ----CCcEEEEEecchh-----hhhhcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCch-
Q 042791 146 ----HGSKILVTTRNES-----VARMMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPL- 215 (761)
Q Consensus 146 ----~~~~iiiTtr~~~-----~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl- 215 (761)
.+..||.||.... +... ....+.+...+.++..+++...+..... .........+++.+.|.+-
T Consensus 154 ~~~~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~~~~la~~~~g~~~~ 227 (297)
T 3b9p_A 154 NPDGDRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGS----PLDTEALRRLAKITDGYSGS 227 (297)
T ss_dssp -----CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSC----CSCHHHHHHHHHHTTTCCHH
T ss_pred cCCCCcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHH
Confidence 2345666666432 2221 2356788888888888888877643211 1223457788889988875
Q ss_pred hHHHHH
Q 042791 216 AAKVIG 221 (761)
Q Consensus 216 al~~~~ 221 (761)
++..+.
T Consensus 228 ~l~~l~ 233 (297)
T 3b9p_A 228 DLTALA 233 (297)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 192
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.39 E-value=2.9e-06 Score=87.18 Aligned_cols=192 Identities=10% Similarity=0.011 Sum_probs=107.3
Q ss_pred CCCCCCceecccchHHHHHHHHhcC----Cc--cCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCE----SS--EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT 79 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~----~~--~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (761)
+++.-++++|.+..++.+.+.+..+ .. ......+.|.|+|++|+|||++|++++. .... ..+.+.++..
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~---~~~~i~~~~l 153 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS--QSGA---TFFSISASSL 153 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH--HTTC---EEEEEEGGGG
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH--HcCC---eEEEEehHHh
Confidence 4556677999999999998887531 00 0012356789999999999999999997 3322 2344544321
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH-HHhCCceEEEEEeCCCCCCc-----------cCchhHHHhhcCC---
Q 042791 80 FDQIRIAKAIIEGLGESASGLNEFQSLMSRIQ-SSIKGKKNFLVLDDVWDGDY-----------NKWQPFFRCLKNG--- 144 (761)
Q Consensus 80 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~LlvlDd~~~~~~-----------~~~~~l~~~~~~~--- 144 (761)
.. . ...........+. ......+.+|+||+++.... ..+..++..+...
T Consensus 154 ~~--------------~--~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 217 (357)
T 3d8b_A 154 TS--------------K--WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS 217 (357)
T ss_dssp CC--------------S--STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----
T ss_pred hc--------------c--ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc
Confidence 11 0 0011112222222 22234678999999954110 1122333333321
Q ss_pred -CCCcEEEEEecchh-hhhhc--CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCC-CchhHHH
Q 042791 145 -LHGSKILVTTRNES-VARMM--GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKG-LPLAAKV 219 (761)
Q Consensus 145 -~~~~~iiiTtr~~~-~~~~~--~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~ 219 (761)
..+..||.||.... +...+ .....+.+...+.++..+++...+..... .........+++.+.| .+..+..
T Consensus 218 ~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~l~~la~~t~G~s~~dl~~ 293 (357)
T 3d8b_A 218 SEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC----CLSEEEIEQIVQQSDAFSGADMTQ 293 (357)
T ss_dssp CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB----CCCHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC----CccHHHHHHHHHHcCCCCHHHHHH
Confidence 12344555665432 21111 12346789999999999999887643211 1224557788888888 4555555
Q ss_pred HHH
Q 042791 220 IGN 222 (761)
Q Consensus 220 ~~~ 222 (761)
+..
T Consensus 294 l~~ 296 (357)
T 3d8b_A 294 LCR 296 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 193
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.38 E-value=9.1e-08 Score=98.90 Aligned_cols=142 Identities=15% Similarity=0.058 Sum_probs=102.4
Q ss_pred CceEEEEEeecCCCCC--cccccCCCceeEEEEcccCCCCCCCchhhHHHHh-ccCCcceEEeeccccccCCcccccccc
Q 042791 374 VKVRHLGLNFQRGASF--PMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELF-SKLACLRALVISQFYISGSHHEANRIK 450 (761)
Q Consensus 374 ~~~~~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~ 450 (761)
..++.++++.+.+... ..-...+++|+.|+|++|.+.... .......+ ...++|+.|+|++|.++ ..+..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~--~~~L~~~L~~~~~~L~~L~Ls~n~l~-----~~~~~ 173 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA--CKDLRDLLLHDQCQITTLRLSNNPLT-----AAGVA 173 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHH--HHHHHHHHHSTTCCCCEEECCSSCCH-----HHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHH--HHHHHHHHHhcCCccceeeCCCCCCC-----hHHHH
Confidence 5788999988877531 112234678999999999763211 11122223 35789999999998875 33444
Q ss_pred ccccchhcccccCccccCCcCCcc-----CchhhhccCCCcEEecCCccCcc----cccccccccccccEeecCCccccc
Q 042791 451 EIPENVGKLIHLKYLNLSELGIER-----LPETLCELYNLQKLDIRRCRNLR----ELPAGIGKLMNMRTLLNGETYALK 521 (761)
Q Consensus 451 ~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~ 521 (761)
.++..+..+++|++|++++|.++. ++..+..+++|++|+|++|.... .++..+...++|++|++++|.+..
T Consensus 174 ~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 174 VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 567777888999999999999873 45667788999999999998543 344556678999999999997654
Q ss_pred c
Q 042791 522 Y 522 (761)
Q Consensus 522 ~ 522 (761)
.
T Consensus 254 ~ 254 (372)
T 3un9_A 254 E 254 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 194
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.36 E-value=1e-06 Score=101.63 Aligned_cols=155 Identities=15% Similarity=0.223 Sum_probs=84.2
Q ss_pred CCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-------CCeeEEEEecCCCC
Q 042791 9 DEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-------FEKVIWVCVSNTFD 81 (761)
Q Consensus 9 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-------f~~~~~v~~~~~~~ 81 (761)
.-+++|||+++++++.+.+.... ...++|+|++|+|||++|+.+++ .+... -..+++++++....
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~~l~~ 239 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQ--RIVKGDVPEGLKGKRIVSLQMGSLLA 239 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHH--HHHHTCSCTTSTTCEEEEECC-----
T ss_pred CCcccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHH--HHhcCCCchhhcCCeEEEeehHHhhc
Confidence 34568999999999999997532 34578999999999999999998 44221 12344443322110
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-C-CceEEEEEeCCCCCC--------ccCchhHHHhhcCCCCCcEEE
Q 042791 82 QIRIAKAIIEGLGESASGLNEFQSLMSRIQSSI-K-GKKNFLVLDDVWDGD--------YNKWQPFFRCLKNGLHGSKIL 151 (761)
Q Consensus 82 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~-~~~~LlvlDd~~~~~--------~~~~~~l~~~~~~~~~~~~ii 151 (761)
. .....+.......+...+ . +.+.+++||+++... ......+...+... +..+|
T Consensus 240 g--------------~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I 303 (854)
T 1qvr_A 240 G--------------AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLI 303 (854)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEE
T ss_pred c--------------CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEE
Confidence 0 001112222222222222 2 367899999996521 11112233333322 34466
Q ss_pred EEecchhh-----hhhc-CCCCeeecCCCChHHHHHHHHHHh
Q 042791 152 VTTRNESV-----ARMM-GSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 152 iTtr~~~~-----~~~~-~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
.+|..... ...+ .....+.+.+++.++..+++....
T Consensus 304 ~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 304 GATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp EEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred EecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 55554332 1111 223468999999999999997543
No 195
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.34 E-value=2.6e-06 Score=89.30 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=42.4
Q ss_pred HHhccCCcceEEeeccccccCCccccccccccc-cchhcccccCccccCCcCCccCc-hhhhccCCCcEEecCC
Q 042791 421 ELFSKLACLRALVISQFYISGSHHEANRIKEIP-ENVGKLIHLKYLNLSELGIERLP-ETLCELYNLQKLDIRR 492 (761)
Q Consensus 421 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~ 492 (761)
.+|.+|.+|+.+.+.. .++.++ ..|.+|.+|+.+++..+ ++.++ ..|.++.+|+.+.+..
T Consensus 65 ~AF~~c~~L~~i~lp~-----------~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-----------TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTTTTCTTEEEEECCT-----------TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred HHhhCCCCceEEEeCC-----------CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 4588999999999863 244454 34778999999999754 55554 4567778887776653
No 196
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.33 E-value=1.2e-05 Score=83.72 Aligned_cols=192 Identities=14% Similarity=0.080 Sum_probs=103.4
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCc------cCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESS------EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT 79 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~------~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (761)
+++.-++++|++..++.+.+++..+.. ......+.|+|+|++|+|||++|++++. +... .++.+.+...
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~--~~~~---~~~~v~~~~l 184 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA--ESNA---TFFNISAASL 184 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH--HTTC---EEEEECSCCC
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH--hhcC---cEEEeeHHHh
Confidence 455567899999999999988732110 0012246789999999999999999987 3322 2334433332
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCC-----------ccCchhHHHhhcCC----
Q 042791 80 FDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGD-----------YNKWQPFFRCLKNG---- 144 (761)
Q Consensus 80 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~-----------~~~~~~l~~~~~~~---- 144 (761)
... . .+ .........+.......+.+|+||+++... ......+...+...
T Consensus 185 ~~~--~-------~g------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 185 TSK--Y-------VG------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred hcc--c-------cc------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 110 0 00 001111111222223456799999996420 00111222222211
Q ss_pred CCCcEEEEEecchh-hhhhc-CC-CCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCch-hHHHH
Q 042791 145 LHGSKILVTTRNES-VARMM-GS-TDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPL-AAKVI 220 (761)
Q Consensus 145 ~~~~~iiiTtr~~~-~~~~~-~~-~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 220 (761)
.....||.||.... +-..+ .. ...+.+...+.++..+++...+..... .........+++.+.|..- ++..+
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS----PLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC----CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 12344555555422 21111 12 346889999999999999887743211 1233457788888888553 55444
Q ss_pred H
Q 042791 221 G 221 (761)
Q Consensus 221 ~ 221 (761)
.
T Consensus 326 ~ 326 (389)
T 3vfd_A 326 A 326 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 197
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.32 E-value=1.2e-05 Score=84.94 Aligned_cols=195 Identities=17% Similarity=0.146 Sum_probs=105.1
Q ss_pred cCCCCCCceecccchHHHHHHHHhcC----C--ccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCE----S--SEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~----~--~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
.|.+.-++++|.++..+.+.+.+..+ . ......++.|+|+|++|+|||++|++++. ... ..-|+.+..
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~--~~~----~~~~~~v~~ 201 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT--EAN----NSTFFSISS 201 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH--HCC----SSEEEEECC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH--HcC----CCCEEEEeH
Confidence 35566678999999999998876321 0 00012347889999999999999999997 331 122333322
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCc-------cCc----hhHHHhhcC---C
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDY-------NKW----QPFFRCLKN---G 144 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~-------~~~----~~l~~~~~~---~ 144 (761)
. ++... ..+.. ......... ..-...+.+|+||+++.... ... ..++..+.. .
T Consensus 202 ~----~l~~~---~~g~~---~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 268 (444)
T 2zan_A 202 S----DLVSK---WLGES---EKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 268 (444)
T ss_dssp C----------------C---CCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC
T ss_pred H----HHHhh---hcchH---HHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC
Confidence 1 01100 11111 111222222 22234678999999965211 011 122222222 1
Q ss_pred CCCcEEEEEecchhhh-hhc--CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCC-chhHHHH
Q 042791 145 LHGSKILVTTRNESVA-RMM--GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGL-PLAAKVI 220 (761)
Q Consensus 145 ~~~~~iiiTtr~~~~~-~~~--~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 220 (761)
..+..||.||...... ..+ .....+.+...+.++..+++..++..... .........|++.+.|. +-.|..+
T Consensus 269 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 269 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN----SLTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE----ECCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 2345566666543221 111 12347788888999999999887643211 11234567888888884 4455555
Q ss_pred HH
Q 042791 221 GN 222 (761)
Q Consensus 221 ~~ 222 (761)
..
T Consensus 345 ~~ 346 (444)
T 2zan_A 345 VR 346 (444)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 198
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.1e-05 Score=83.59 Aligned_cols=184 Identities=16% Similarity=0.096 Sum_probs=104.0
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEec
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 77 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (761)
.|.+.-+++.|-++..++|.+.+.-+-.. +-..++-|.++||+|+|||++|++++. ..... .+.+..+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~---~~~v~~s 249 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGAN---FIFSPAS 249 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCE---EEEEEGG
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCC---EEEEehh
Confidence 35566778899998888888765431100 123467789999999999999999998 44333 2334433
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHH-HHHHhCCceEEEEEeCCCCCC-------c-c------CchhHHHhhc
Q 042791 78 NTFDQIRIAKAIIEGLGESASGLNEFQSLMSR-IQSSIKGKKNFLVLDDVWDGD-------Y-N------KWQPFFRCLK 142 (761)
Q Consensus 78 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~LlvlDd~~~~~-------~-~------~~~~l~~~~~ 142 (761)
...+ ....+....+.. ....-...+.+|++|++|... . . .+..++..+.
T Consensus 250 ~l~s----------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 313 (437)
T 4b4t_L 250 GIVD----------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMD 313 (437)
T ss_dssp GTCC----------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHH
T ss_pred hhcc----------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhh
Confidence 2211 001111222222 222224578999999996410 0 0 0122344443
Q ss_pred CC--CCCcEEEEEecchhhhhh-c---C-CCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 143 NG--LHGSKILVTTRNESVARM-M---G-STDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 143 ~~--~~~~~iiiTtr~~~~~~~-~---~-~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
.. ..+..||.||......+. + + .+..++++..+.++..++|..+..+..... .. ....+++.+.|.-
T Consensus 314 g~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~-d~----dl~~lA~~t~G~s 387 (437)
T 4b4t_L 314 GFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTG-EF----DFEAAVKMSDGFN 387 (437)
T ss_dssp SSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCS-CC----CHHHHHHTCCSCC
T ss_pred cccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCc-cc----CHHHHHHhCCCCC
Confidence 32 234556666654432221 1 1 245788888899999999988764322111 11 1466778887754
No 199
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.30 E-value=1.5e-06 Score=79.78 Aligned_cols=126 Identities=14% Similarity=0.139 Sum_probs=68.3
Q ss_pred CCceec----ccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhh-ccCCeeEEEEecCCCCHHH
Q 042791 10 EGEVCG----RVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIWVCVSNTFDQIR 84 (761)
Q Consensus 10 ~~~~vg----r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~-~~f~~~~~v~~~~~~~~~~ 84 (761)
-+.|++ +++.++.+.+++.... ....+.++|+|++|+||||||++++. ... ..-..++|+ +..+
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~--~~~~~~g~~~~~~------~~~~ 77 (180)
T 3ec2_A 9 LDTYHPKNVSQNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLK--AIYEKKGIRGYFF------DTKD 77 (180)
T ss_dssp SSSCCCCSHHHHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHH--HHHHHSCCCCCEE------EHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHH--HHHHHcCCeEEEE------EHHH
Confidence 345654 4455555556665433 12356899999999999999999998 443 222234454 3444
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCc--hhHHHhhcCC-CCCcEEEEEecc
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKW--QPFFRCLKNG-LHGSKILVTTRN 156 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~--~~l~~~~~~~-~~~~~iiiTtr~ 156 (761)
+...+.......... .....+. +.-++|+||++....+.+ ..+...+... ..+..+|+||..
T Consensus 78 ~~~~~~~~~~~~~~~-----~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 78 LIFRLKHLMDEGKDT-----KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHHHHHTCCS-----HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHHhcCchHH-----HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 444444433322111 1112111 445899999964222222 2333333222 235678888774
No 200
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.29 E-value=2.5e-07 Score=85.23 Aligned_cols=120 Identities=14% Similarity=-0.028 Sum_probs=73.6
Q ss_pred cccCCCceeEEEEccc-CCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCc
Q 042791 392 SFFEFDRLRSLLIYDR-SYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSEL 470 (761)
Q Consensus 392 ~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~ 470 (761)
.+..++.|+.|+|++| .+.... .......+...++|++|+|++|.+. +.+...+...+...++|++|++++|
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g--~~~l~~~L~~~~~L~~L~Ls~n~i~-----~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPT--LKACAEALKTNTYVKKFSIVGTRSN-----DPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHH--HHHHHHHHTTCCSCCEEECTTSCCC-----HHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHhcCCCCCEEEecCCCCCCHHH--HHHHHHHHHhCCCcCEEECcCCCCC-----hHHHHHHHHHHHhCCCcCEEECcCC
Confidence 4556777788877776 542211 1123334566777888888877665 2334445555666677788888887
Q ss_pred CCcc-----CchhhhccCCCcEEec--CCccCccc----ccccccccccccEeecCCcc
Q 042791 471 GIER-----LPETLCELYNLQKLDI--RRCRNLRE----LPAGIGKLMNMRTLLNGETY 518 (761)
Q Consensus 471 ~i~~-----lp~~~~~l~~L~~L~l--~~~~~~~~----lp~~~~~l~~L~~L~l~~~~ 518 (761)
.|.. +...+...+.|++|+| ++|..... +...+...++|++|++++|.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 7762 4455666677888887 66664332 33344555677777777764
No 201
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.28 E-value=2.2e-06 Score=91.33 Aligned_cols=146 Identities=16% Similarity=0.171 Sum_probs=81.0
Q ss_pred CCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC-------CeeEEEEecCCCCH
Q 042791 10 EGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF-------EKVIWVCVSNTFDQ 82 (761)
Q Consensus 10 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f-------~~~~~v~~~~~~~~ 82 (761)
-+++|||+.+++++.+.+.... ...++|+|++|+|||++|+.++. .+...+ ..++.++++
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~----- 245 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMG----- 245 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC--------
T ss_pred CCCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeCC-----
Confidence 4569999999999999997532 34678999999999999999997 443221 112223222
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchhhhh-
Q 042791 83 IRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVAR- 161 (761)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~- 161 (761)
...... .......+.. ..-...+.++++|.- .+....+...+.. ...++|.+|.......
T Consensus 246 --------~~~~g~--~e~~~~~~~~---~~~~~~~~iLfiD~~----~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 246 --------TKYRGE--FEDRLKKVMD---EIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKY 306 (468)
T ss_dssp -----------------CTTHHHHHH---HHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHH
T ss_pred --------ccccch--HHHHHHHHHH---HHHhcCCeEEEEeCc----hhHHHHHHHhhcC--CCEEEEecCCHHHHHHH
Confidence 000000 0112222222 222346788999921 2222223333322 2345666655443111
Q ss_pred -----h-cCCCCeeecCCCChHHHHHHHHHHh
Q 042791 162 -----M-MGSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 162 -----~-~~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
. ......+.+...+.++..+++...+
T Consensus 307 ~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 307 IEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1 1123479999999999999999765
No 202
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.24 E-value=1e-05 Score=79.12 Aligned_cols=191 Identities=13% Similarity=0.022 Sum_probs=101.0
Q ss_pred cCCCCCCceecccchHHHHHHHHhc---CCc---cCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLC---ESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~---~~~---~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
.+...-++++|.+...+++.+.+.. +.. -+...++-++|+|++|+||||+|++++. ..... .+++....
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~--~~~~~---~~~i~~~~ 80 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVP---FFTISGSD 80 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH--HHTCC---EEEECSCS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCC---EEEEeHHH
Confidence 4556667899998887777654322 110 0011245688999999999999999997 33322 23343322
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCcc--------------CchhHHHhhcCC
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYN--------------KWQPFFRCLKNG 144 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~--------------~~~~l~~~~~~~ 144 (761)
... ... ..........+.......+.++++|+++..... ....++..+...
T Consensus 81 ~~~--------------~~~-~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (257)
T 1lv7_A 81 FVE--------------MFV-GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF 145 (257)
T ss_dssp STT--------------SCC-CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC
T ss_pred HHH--------------Hhh-hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc
Confidence 110 000 011222233333444456789999998431110 112233333221
Q ss_pred --CCCcEEEEEecchh-hhhhc----CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCC-Cchh
Q 042791 145 --LHGSKILVTTRNES-VARMM----GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKG-LPLA 216 (761)
Q Consensus 145 --~~~~~iiiTtr~~~-~~~~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pla 216 (761)
..+..||.||.... +-..+ .....+.+...+.++..+++..++.... .. .......++..+.| .+--
T Consensus 146 ~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~----~~~~~~~la~~~~G~~~~d 220 (257)
T 1lv7_A 146 EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LA----PDIDAAIIARGTPGFSGAD 220 (257)
T ss_dssp CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BC----TTCCHHHHHHTCTTCCHHH
T ss_pred ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CC----ccccHHHHHHHcCCCCHHH
Confidence 23445666665433 21211 1234678888888898888887653211 11 11124557777787 6655
Q ss_pred HHHH
Q 042791 217 AKVI 220 (761)
Q Consensus 217 l~~~ 220 (761)
+..+
T Consensus 221 l~~l 224 (257)
T 1lv7_A 221 LANL 224 (257)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 203
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.24 E-value=6.4e-07 Score=78.51 Aligned_cols=111 Identities=11% Similarity=0.035 Sum_probs=65.1
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAII 90 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 90 (761)
-+++|++..++++.+.+..... ....|.|+|++|+|||++|+++++. .. ..+++++.. ......
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~--~~----~~~~~~~~~--~~~~~~---- 67 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKN--GT----PWVSPARVE--YLIDMP---- 67 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCT--TS----CEECCSSTT--HHHHCH----
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh--CC----CeEEechhh--CChHhh----
Confidence 4589999999999888764321 2345889999999999999999973 22 223332221 011110
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCC-CCCcEEEEEecc
Q 042791 91 EGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG-LHGSKILVTTRN 156 (761)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~-~~~~~iiiTtr~ 156 (761)
..+.+.. +.-.+++||++.........+...+... ..+.++|+||..
T Consensus 68 -----------------~~~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 68 -----------------MELLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp -----------------HHHHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred -----------------hhHHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1111111 2246889999876665566666665543 335678877663
No 204
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=1.1e-05 Score=83.12 Aligned_cols=183 Identities=15% Similarity=0.040 Sum_probs=101.9
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCc-------cCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESS-------EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
|.+.-+++.|-++..++|.+.+.-+-. -+-..++-|.++|++|+|||.+|++++. +.... .+.+..+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~---fi~vs~s~ 278 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDAT---FIRVIGSE 278 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCE---EEEEEGGG
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCC---eEEEEhHH
Confidence 556677889999988888876432100 0123467889999999999999999998 44433 23333322
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHH-HHHHhCCceEEEEEeCCCCCC------cc--------CchhHHHhhcC
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMSR-IQSSIKGKKNFLVLDDVWDGD------YN--------KWQPFFRCLKN 143 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~LlvlDd~~~~~------~~--------~~~~l~~~~~~ 143 (761)
-.+ ....+.+..+.. +...-...+.+|++|+++... .. ....++..+..
T Consensus 279 L~s----------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 342 (467)
T 4b4t_H 279 LVQ----------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG 342 (467)
T ss_dssp GCC----------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS
T ss_pred hhc----------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc
Confidence 110 011111222222 222224578999999996411 00 01122333333
Q ss_pred C--CCCcEEEEEecch-----hhhhhcCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 144 G--LHGSKILVTTRNE-----SVARMMGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 144 ~--~~~~~iiiTtr~~-----~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
. ..+..||.||... .+.+.-..+..+++...+.++..++|..++...... ... ....|++.+.|.-
T Consensus 343 ~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dv----dl~~LA~~T~GfS 415 (467)
T 4b4t_H 343 FDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGI----RWELISRLCPNST 415 (467)
T ss_dssp SCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSC----CHHHHHHHCCSCC
T ss_pred cCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCC----CHHHHHHHCCCCC
Confidence 2 2233455565433 232211235688999999999999998876432111 111 1466778887753
No 205
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.23 E-value=2.9e-07 Score=84.77 Aligned_cols=121 Identities=13% Similarity=0.059 Sum_probs=90.3
Q ss_pred hhHHHHhccCCcceEEeeccc-cccCCccccccccccccchhcccccCccccCCcCCc-----cCchhhhccCCCcEEec
Q 042791 417 SILQELFSKLACLRALVISQF-YISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIE-----RLPETLCELYNLQKLDI 490 (761)
Q Consensus 417 ~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l 490 (761)
+....++...+.|+.|+|++| .+. ..+...+...+...++|++|+|++|.+. .+...+...+.|++|+|
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~-----~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L 100 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIP-----VPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV 100 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCC-----HHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCC-----HHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEEC
Confidence 445566788999999999998 765 3455566777778899999999999987 24566777789999999
Q ss_pred CCccCccc----ccccccccccccEeec--CCcccccc----ccccCCCCCCCcccCceeec
Q 042791 491 RRCRNLRE----LPAGIGKLMNMRTLLN--GETYALKY----MPIGISKLTNLRTLDRFVVG 542 (761)
Q Consensus 491 ~~~~~~~~----lp~~~~~l~~L~~L~l--~~~~~~~~----~p~~l~~l~~L~~L~l~~~~ 542 (761)
++|..... +...+...++|++|++ ++|.+... +...+...++|+.|++++|.
T Consensus 101 ~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 101 ESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred cCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 99985443 5566778889999999 77865433 33344555677777776654
No 206
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.21 E-value=8.7e-06 Score=86.60 Aligned_cols=188 Identities=11% Similarity=0.038 Sum_probs=104.0
Q ss_pred CCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCC
Q 042791 8 IDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF 80 (761)
Q Consensus 8 ~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~ 80 (761)
+.-++++|.+..++++.+.+..+... +...++.|+|+|++|+|||++|+++++ .... ..+.+++..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~---~fv~vn~~~-- 273 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGA---FFFLINGPE-- 273 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSS---EEEEEEHHH--
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCC---CEEEEEchH--
Confidence 34456899999999998887643000 012346789999999999999999987 3322 233443221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCc-----------cCchhHHHhhcCC--CCC
Q 042791 81 DQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDY-----------NKWQPFFRCLKNG--LHG 147 (761)
Q Consensus 81 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~-----------~~~~~l~~~~~~~--~~~ 147 (761)
+ ...+. ..........+.....+.+.+|+||+++.... .....++..+... ...
T Consensus 274 ----l----~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 274 ----I----MSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp ----H----HTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred ----h----hhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 1 11110 01112223333344445678999999943111 1123344444422 224
Q ss_pred cEEEEEecchh-hhhhc----CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCC-chhHHHH
Q 042791 148 SKILVTTRNES-VARMM----GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGL-PLAAKVI 220 (761)
Q Consensus 148 ~~iiiTtr~~~-~~~~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 220 (761)
.+||.||.... +-..+ .....+.+...+.++..+++..++...... .......+++.+.|. +-.+..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-----~~~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-----DDVDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-----TTCCHHHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-----chhhHHHHHHHccCCcHHHHHHH
Confidence 45565665432 22221 223468999999999999999876422111 111245677777764 4444443
No 207
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.20 E-value=8.3e-06 Score=82.42 Aligned_cols=124 Identities=14% Similarity=0.269 Sum_probs=70.8
Q ss_pred CceecccchHHHHHHHHhcCCc---cCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAK 87 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~---~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (761)
..++|.+..++.+...+..... .+......++++|++|+|||++|++++. .....-...+++.++........ .
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~~~~~~~~-~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKHAV-S 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGGCCSTTHH-H
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeecccccccccH-H
Confidence 3578999999988888765321 0012235899999999999999999997 44333333556666543332211 1
Q ss_pred HHHHHhcCCCC--CCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcC
Q 042791 88 AIIEGLGESAS--GLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKN 143 (761)
Q Consensus 88 ~i~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 143 (761)
.+ ++.... ...........+. ....-+++||+++......+..+...+..
T Consensus 94 ~l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~ 145 (311)
T 4fcw_A 94 RL---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDD 145 (311)
T ss_dssp HH---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred Hh---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhc
Confidence 11 221110 0010011222221 12346999999987666666666666543
No 208
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.19 E-value=1.8e-05 Score=79.88 Aligned_cols=155 Identities=12% Similarity=0.185 Sum_probs=85.5
Q ss_pred CceecccchHHHHHHHHhcC--Ccc------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCC-
Q 042791 11 GEVCGRVDEKNELLSKLLCE--SSE------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFD- 81 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~--~~~------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~- 81 (761)
..++|++...+.+...+... ... ....++.+.++|++|+|||++|+++++ .... ..+.+.+.....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~--~l~~---~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK--LANA---PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH--HHTC---CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH--HhCC---CEEEEcchhcccC
Confidence 45899999999998877541 000 011245788999999999999999997 3422 244455443221
Q ss_pred ------HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccC------------chhHHHhhcC
Q 042791 82 ------QIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNK------------WQPFFRCLKN 143 (761)
Q Consensus 82 ------~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~------------~~~l~~~~~~ 143 (761)
.......+...... .+... ..+.+++||+++...... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~--~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-------------AIDAV--EQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-------------CHHHH--HHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhhH-------------HHhhc--cCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 11112222211100 00000 235699999997643333 3445544443
Q ss_pred C----------CCCcEEEEEec----c-hhhhhhc-CC-CCeeecCCCChHHHHHHHHH
Q 042791 144 G----------LHGSKILVTTR----N-ESVARMM-GS-TDSISIKQLAEEECWSLFKQ 185 (761)
Q Consensus 144 ~----------~~~~~iiiTtr----~-~~~~~~~-~~-~~~~~l~~l~~~ea~~l~~~ 185 (761)
. ..+..+|.|+. . ..+.+.+ .. ...+.+.+++.++..+++..
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence 2 12344555541 1 1111111 11 24689999999999999884
No 209
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.18 E-value=8.8e-06 Score=81.31 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=87.4
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAII 90 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 90 (761)
+.++|+...+.++.+.+..... ....|.|+|++|+|||++|+++++ .....-...+.++++... ..+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~--~~~~~~~~~v~v~~~~~~--~~l~~--- 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHA--CSARSDRPLVTLNCAALN--ESLLE--- 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHH--HSSCSSSCCCEEECSSCC--HHHHH---
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHH--hCcccCCCeEEEeCCCCC--hHHHH---
Confidence 4689999999999888776432 234688999999999999999997 222222234456665432 22221
Q ss_pred HHhcCCCCCC-CcH-HHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCC-----------CCcEEEEEecch
Q 042791 91 EGLGESASGL-NEF-QSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTRNE 157 (761)
Q Consensus 91 ~~l~~~~~~~-~~~-~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~~~~iiiTtr~~ 157 (761)
..+....... ... ......+... ..-.++||+++.........+...+.... ...+||.||...
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC
T ss_pred HHhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc
Confidence 2222211100 000 0000111111 12368999998765555566666555431 235777777642
Q ss_pred --h-h---------hhhcCCCCeeecCCCC--hHHHHHHHHH
Q 042791 158 --S-V---------ARMMGSTDSISIKQLA--EEECWSLFKQ 185 (761)
Q Consensus 158 --~-~---------~~~~~~~~~~~l~~l~--~~ea~~l~~~ 185 (761)
. + ...+. ...+.++++. .++...++..
T Consensus 148 l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~ 188 (304)
T 1ojl_A 148 LAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADH 188 (304)
T ss_dssp HHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHH
T ss_pred HHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHH
Confidence 1 1 11111 3357889998 4565555543
No 210
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.18 E-value=2.9e-06 Score=83.47 Aligned_cols=161 Identities=14% Similarity=0.195 Sum_probs=83.3
Q ss_pred CCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHH
Q 042791 10 EGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAI 89 (761)
Q Consensus 10 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 89 (761)
-+.++|++..+.++.+.+..... ....|.|+|++|+|||++|+++++ .....-...++++++.. ....+...+
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~--~~~~~~~~~~~v~~~~~-~~~~~~~~l 77 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHY--LSSRWQGPFISLNCAAL-NENLLDSEL 77 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHH--TSTTTTSCEEEEEGGGS-CHHHHHHHH
T ss_pred cccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHH--hcCccCCCeEEEecCCC-ChhHHHHHh
Confidence 35689999999988877664331 235688999999999999999997 33222223556666653 222222212
Q ss_pred HHHhcCCCCCCCcHHH-HHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCC-----------CCCcEEEEEecch
Q 042791 90 IEGLGESASGLNEFQS-LMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG-----------LHGSKILVTTRNE 157 (761)
Q Consensus 90 ~~~l~~~~~~~~~~~~-~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~-----------~~~~~iiiTtr~~ 157 (761)
. +........... ....+.. ...-+++||+++.........+...+... ....+||.||...
T Consensus 78 ~---g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~ 151 (265)
T 2bjv_A 78 F---GHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (265)
T ss_dssp H---CCC---------CCCCHHHH---TTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSC
T ss_pred c---CCcccccccccccccchhhh---cCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcC
Confidence 1 111000000000 0000111 12348999999876555555666555432 1245788777652
Q ss_pred --hh----------hhhcCCCCeeecCCCCh--HHHHHHHH
Q 042791 158 --SV----------ARMMGSTDSISIKQLAE--EECWSLFK 184 (761)
Q Consensus 158 --~~----------~~~~~~~~~~~l~~l~~--~ea~~l~~ 184 (761)
.. ...+. ...+.++++.+ ++...++.
T Consensus 152 ~~~~~~~~~~~~~L~~Rl~-~~~i~lp~L~~R~~di~~l~~ 191 (265)
T 2bjv_A 152 LPAMVNEGTFRADLLDALA-FDVVQLPPLRERESDIMLMAE 191 (265)
T ss_dssp HHHHHHHTSSCHHHHHHHC-SEEEECCCGGGCHHHHHHHHH
T ss_pred HHHHHHcCCccHHHHHhhc-CcEEeCCChhhhhHHHHHHHH
Confidence 11 11111 23578889986 55555443
No 211
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=6.1e-06 Score=85.34 Aligned_cols=184 Identities=13% Similarity=0.065 Sum_probs=101.3
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCc-------cCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEec
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESS-------EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 77 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (761)
.|.+.-+++.|-++..++|.+.+..+-. .+-..++-|.++||||+|||.+|++++. +.... .+.+..+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~---f~~v~~s 249 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNAT---FLKLAAP 249 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCE---EEEEEGG
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCC---EEEEehh
Confidence 3566677889999999888876432110 0123467889999999999999999998 44333 2333332
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH-HHhCCceEEEEEeCCCCC-----C--cc-------CchhHHHhhc
Q 042791 78 NTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQ-SSIKGKKNFLVLDDVWDG-----D--YN-------KWQPFFRCLK 142 (761)
Q Consensus 78 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~LlvlDd~~~~-----~--~~-------~~~~l~~~~~ 142 (761)
.-. .. ...+.+..+..+- ..-...+.+|++|+++.. . .. ....++..+.
T Consensus 250 ~l~--------------~~--~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld 313 (434)
T 4b4t_M 250 QLV--------------QM--YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313 (434)
T ss_dssp GGC--------------SS--CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT
T ss_pred hhh--------------hc--ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh
Confidence 211 00 0111122222221 122346799999999530 0 00 0122333444
Q ss_pred CCC--CCcEEEEEecchhhhh-hc----CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 143 NGL--HGSKILVTTRNESVAR-MM----GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 143 ~~~--~~~~iiiTtr~~~~~~-~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
... .+..||.||......+ .+ ..+..++++..+.++..++|..++....... ... ...+++.+.|.-
T Consensus 314 g~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~-dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 314 GFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDD-DIN----WQELARSTDEFN 387 (434)
T ss_dssp TSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCS-CCC----HHHHHHHCSSCC
T ss_pred ccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCC-cCC----HHHHHHhCCCCC
Confidence 322 2344555665433222 11 2245789999999999999987764321111 111 466777777743
No 212
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.16 E-value=6.6e-06 Score=77.09 Aligned_cols=129 Identities=17% Similarity=0.176 Sum_probs=68.4
Q ss_pred CCCCceeccc----chHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHH
Q 042791 8 IDEGEVCGRV----DEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQI 83 (761)
Q Consensus 8 ~~~~~~vgr~----~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (761)
..-+.|++.. ..++.+.+++..... ...++.+.|+|++|+|||++|++++. ........++|+.+.
T Consensus 22 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~~------ 91 (202)
T 2w58_A 22 ASLSDVDLNDDGRIKAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYVP------ 91 (202)
T ss_dssp CCTTSSCCSSHHHHHHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEHH------
T ss_pred CCHhhccCCChhHHHHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEhH------
Confidence 3455677654 344455566554321 11236889999999999999999998 555444556677543
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCc--hhHHH-hhcCC-CCCcEEEEEecc
Q 042791 84 RIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKW--QPFFR-CLKNG-LHGSKILVTTRN 156 (761)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~--~~l~~-~~~~~-~~~~~iiiTtr~ 156 (761)
.+...+....... ........+.. .-+|||||++......+ ..+.. .+... ..+.++|+||..
T Consensus 92 ~~~~~~~~~~~~~-----~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 92 ELFRELKHSLQDQ-----TMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHHHHHHC---C-----CCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHHHHhccc-----hHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 3444444322211 12222232221 23899999965332222 22222 22211 234568888774
No 213
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=2.7e-05 Score=79.38 Aligned_cols=183 Identities=12% Similarity=0.050 Sum_probs=100.8
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCc-------cCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESS-------EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
|.+.-+++.|-++..++|.+.+.-+-. .+-..++-|.++|++|+|||.+|++++. +....| +.+..+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s~ 251 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGSE 251 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESGG
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHHH
Confidence 556667788998888888876543110 0123467789999999999999999998 443332 2333222
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHH-HHHhCCceEEEEEeCCCCCC--------cc------CchhHHHhhcC
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMSRI-QSSIKGKKNFLVLDDVWDGD--------YN------KWQPFFRCLKN 143 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~l~~~~~LlvlDd~~~~~--------~~------~~~~l~~~~~~ 143 (761)
.. . ....+.+..+..+ ...-...+.+|++|++|... .. .+..++..+..
T Consensus 252 l~--------------s--k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 252 LI--------------Q--KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp GC--------------C--SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred hh--------------h--ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 11 0 0111222222222 22223568999999996410 00 11223333332
Q ss_pred C--CCCcEEEEEecchhhhhh-c----CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 144 G--LHGSKILVTTRNESVARM-M----GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 144 ~--~~~~~iiiTtr~~~~~~~-~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
. ..+..||.||......+. + ..+..+++...+.++..++|..+...... .... ....+++.+.|.-
T Consensus 316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-~~dv----dl~~LA~~T~GfS 388 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-SEDV----NLETLVTTKDDLS 388 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-CSCC----CHHHHHHHCCSCC
T ss_pred cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-CCcC----CHHHHHHhCCCCC
Confidence 2 234455666654333221 1 12446888888999999999887643211 1111 1466777777753
No 214
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=1.6e-05 Score=82.14 Aligned_cols=183 Identities=16% Similarity=0.105 Sum_probs=96.9
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
|.+.-+++.|-++..++|.+.+..+-.. +-..++-|.++||+|+|||++|++++. ..... .+.+..+.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~---~~~v~~~~ 241 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAA---FIRVNGSE 241 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCE---EEEEEGGG
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---eEEEecch
Confidence 4456677899999888888765431100 123467789999999999999999998 44333 23343332
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHH-HHHHHHhCCceEEEEEeCCCC--------CCcc------CchhHHHhhcC
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLM-SRIQSSIKGKKNFLVLDDVWD--------GDYN------KWQPFFRCLKN 143 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~~~~~l~~~~~LlvlDd~~~--------~~~~------~~~~l~~~~~~ 143 (761)
..+ ....+....+ ..+..+-...+.++++|+++. .... ....++..+..
T Consensus 242 l~~----------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg 305 (428)
T 4b4t_K 242 FVH----------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG 305 (428)
T ss_dssp TCC----------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHH
T ss_pred hhc----------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhC
Confidence 111 0011111111 222222245689999999953 0000 12233333433
Q ss_pred --CCCCcEEEEEecch-----hhhhhcCCCCeeecCCC-ChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 144 --GLHGSKILVTTRNE-----SVARMMGSTDSISIKQL-AEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 144 --~~~~~~iiiTtr~~-----~~~~~~~~~~~~~l~~l-~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
...+..||.||... .+.+.-..+..+++..+ +.++..++|..+..+... .... ....+++.+.|.-
T Consensus 306 ~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l-~~~~----dl~~lA~~t~G~s 379 (428)
T 4b4t_K 306 FDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL-APEA----DLDSLIIRNDSLS 379 (428)
T ss_dssp SCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB-CTTC----CHHHHHHHTTTCC
T ss_pred CCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC-Cccc----CHHHHHHHCCCCC
Confidence 22344566666543 23221112446778655 555666677666543211 1111 1466777777743
No 215
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.13 E-value=2.5e-05 Score=81.80 Aligned_cols=109 Identities=15% Similarity=0.171 Sum_probs=68.5
Q ss_pred cccCCC-ceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccc-cchhcccccCccccCC
Q 042791 392 SFFEFD-RLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIP-ENVGKLIHLKYLNLSE 469 (761)
Q Consensus 392 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~l~~ 469 (761)
+|.+|+ .|+.+.+...- ..+...+|.+|.+|+.+.+..+.. ..++.+. ..|..+.+|+.+.+..
T Consensus 58 aF~~~~~~L~sI~iP~sv-------t~Ig~~AF~~C~~L~~i~~~~n~p-------~~l~~Ig~~aF~~c~~L~~i~~~~ 123 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDTV-------TEIGSNAFYNCTSLKRVTIQDNKP-------SCVKKIGRQAFMFCSELTDIPILD 123 (394)
T ss_dssp TTTTCCSCCCEEEECTTC-------CEECTTTTTTCTTCCEEEEGGGCC-------CCCCEECTTTTTTCTTCCBCGGGT
T ss_pred hccCCCCcCEEEEECCCe-------eEEhHHHhhCCccCceEeecCCCC-------CeeeEechhhchhcccceeeccCC
Confidence 677774 58888886532 233344588899999998876431 2234443 2356677787776654
Q ss_pred cCCccCc-hhhhccCCCcEEecCCccCccccc-ccccccccccEeecCCc
Q 042791 470 LGIERLP-ETLCELYNLQKLDIRRCRNLRELP-AGIGKLMNMRTLLNGET 517 (761)
Q Consensus 470 ~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~ 517 (761)
+ ++.++ ..|..+.+|+.+.+..+ ...++ ..+..+.+|+.+.+..+
T Consensus 124 ~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 124 S-VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp T-CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred c-cceehhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 3 44444 35677888888888653 23333 34567788888777654
No 216
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.13 E-value=5.3e-07 Score=92.27 Aligned_cols=138 Identities=17% Similarity=0.158 Sum_probs=76.6
Q ss_pred ccccCCCceeEEEEcccCCCCCCC----chhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccc
Q 042791 391 MSFFEFDRLRSLLIYDRSYSNGSL----NGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLN 466 (761)
Q Consensus 391 ~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~ 466 (761)
.+...+++|+.|.+.........+ .+. +..++..+|+|+.|++++|. .+ .++. + .+++|+.|+
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~-L~~ll~~~P~L~~L~L~g~~---------~l-~l~~-~-~~~~L~~L~ 199 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVD-LSPVLDAMPLLNNLKIKGTN---------NL-SIGK-K-PRPNLKSLE 199 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCB-CHHHHHTCTTCCEEEEECCB---------TC-BCCS-C-BCTTCSEEE
T ss_pred HhhhhcchhhheeecCcchhhcccccccccC-HHHHHhcCCCCcEEEEeCCC---------Cc-eecc-c-cCCCCcEEE
Confidence 345567788888876543221111 111 33456788999999998651 11 2333 3 377889999
Q ss_pred cCCcCCc-cCchhhh--ccCCCcEEecCCc--cC-----cccccccc--cccccccEeecCCccccccccccC---CCCC
Q 042791 467 LSELGIE-RLPETLC--ELYNLQKLDIRRC--RN-----LRELPAGI--GKLMNMRTLLNGETYALKYMPIGI---SKLT 531 (761)
Q Consensus 467 l~~~~i~-~lp~~~~--~l~~L~~L~l~~~--~~-----~~~lp~~~--~~l~~L~~L~l~~~~~~~~~p~~l---~~l~ 531 (761)
+..|.+. .....+. .+++|+.|+|+.+ .. ...+...+ ..+++|++|++++|.+....+..+ ..++
T Consensus 200 L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~ 279 (362)
T 2ra8_A 200 IISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279 (362)
T ss_dssp EECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG
T ss_pred EecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC
Confidence 8887765 2223333 6888999888632 11 11122222 246788888887775543222221 2344
Q ss_pred CCcccCceee
Q 042791 532 NLRTLDRFVV 541 (761)
Q Consensus 532 ~L~~L~l~~~ 541 (761)
+|++|+++.|
T Consensus 280 ~L~~LdLs~n 289 (362)
T 2ra8_A 280 QLETMDISAG 289 (362)
T ss_dssp GCSEEECCSS
T ss_pred CCCEEECCCC
Confidence 5555555443
No 217
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.10 E-value=5.4e-05 Score=79.70 Aligned_cols=185 Identities=13% Similarity=0.033 Sum_probs=102.1
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCcc------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSE------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
.+.+.-++++|.++..+++.+.+.....+ +...++-|+|+|++|+|||++|++++. +.... .+.++++.
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~---f~~is~~~ 84 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVP---FFHISGSD 84 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCC---EEEEEGGG
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCC---eeeCCHHH
Confidence 34455677999988877776654321100 012245588999999999999999997 33322 23444333
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCcc--------------CchhHHHhhcCC
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYN--------------KWQPFFRCLKNG 144 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~--------------~~~~l~~~~~~~ 144 (761)
.... .. ..........+.......+.+|+||+++..... .+..++..+...
T Consensus 85 ~~~~--------------~~-g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~ 149 (476)
T 2ce7_A 85 FVEL--------------FV-GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF 149 (476)
T ss_dssp TTTC--------------CT-THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS
T ss_pred HHHH--------------Hh-cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc
Confidence 2110 00 001112223333444457889999999652111 123333333321
Q ss_pred --CCCcEEEEEecchhhhh-hc----CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 145 --LHGSKILVTTRNESVAR-MM----GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 145 --~~~~~iiiTtr~~~~~~-~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
..+..||.||....... .+ .....+.+...+.++..+++..++..... . .. .....+++.+.|+.
T Consensus 150 ~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~--~~--v~l~~la~~t~G~s 221 (476)
T 2ce7_A 150 DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-A--ED--VNLEIIAKRTPGFV 221 (476)
T ss_dssp CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-C--TT--CCHHHHHHTCTTCC
T ss_pred CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-c--ch--hhHHHHHHhcCCCc
Confidence 23455666666544322 11 12347888999988988998877643211 1 11 11455888888877
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.09 E-value=1.2e-05 Score=91.82 Aligned_cols=156 Identities=15% Similarity=0.182 Sum_probs=88.4
Q ss_pred CCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc------CCeeEE-EEecCCCCH
Q 042791 10 EGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN------FEKVIW-VCVSNTFDQ 82 (761)
Q Consensus 10 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~------f~~~~~-v~~~~~~~~ 82 (761)
-++++||+.+++++.+.+... ....++|+|++|+|||++|+.++. .+... ....+| +.....
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~--~l~~~~v~~~~~~~~~~~~~~~~l--- 253 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAW--RIVQGDVPEVMADCTIYSLDIGSL--- 253 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHH--HHHHTCSCGGGTTCEEEECCCC-----
T ss_pred CCCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHH--HHHhCCCChhhcCCEEEEEcHHHH---
Confidence 356899999999999999753 245678999999999999999997 44221 122222 211110
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-CCceEEEEEeCCCCCCc-----cCchhHHHhhcC--CCCCcEEEEEe
Q 042791 83 IRIAKAIIEGLGESASGLNEFQSLMSRIQSSI-KGKKNFLVLDDVWDGDY-----NKWQPFFRCLKN--GLHGSKILVTT 154 (761)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDd~~~~~~-----~~~~~l~~~~~~--~~~~~~iiiTt 154 (761)
.. ........+.....+.+.+ ..++.+++|||++.... ..-......+.. .....++|.+|
T Consensus 254 ----------~~-~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at 322 (758)
T 1r6b_X 254 ----------LA-GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGST 322 (758)
T ss_dssp -----------C-CCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEE
T ss_pred ----------hc-cccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEe
Confidence 00 1112233444444444444 34578999999965210 011111122221 12244566666
Q ss_pred cchhhhhhc-------CCCCeeecCCCChHHHHHHHHHHh
Q 042791 155 RNESVARMM-------GSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 155 r~~~~~~~~-------~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
......... .....+.+...+.++..+++...+
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 554322111 112368999999999999987654
No 219
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.07 E-value=1.2e-05 Score=85.71 Aligned_cols=97 Identities=12% Similarity=0.063 Sum_probs=61.1
Q ss_pred EEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEe----------c----chhhhh-hcCCCCeeecCCCChHHHHHHH
Q 042791 119 NFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT----------R----NESVAR-MMGSTDSISIKQLAEEECWSLF 183 (761)
Q Consensus 119 ~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTt----------r----~~~~~~-~~~~~~~~~l~~l~~~ea~~l~ 183 (761)
-++++|+++.-+...++.++..+...... .+|+.| . ...+.. .......+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999887667777787777765444 344344 2 111111 1123446799999999999999
Q ss_pred HHHhhCCCCCCCCCchhHHHHHHHHhc-CCCchhHHHH
Q 042791 184 KQLAFFGCSFEDCEKLEPIGRKIACKC-KGLPLAAKVI 220 (761)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plal~~~ 220 (761)
...+..... ...++....|++.+ .|.|.....+
T Consensus 376 ~~~~~~~~~----~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGI----NISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTC----CBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCC----CCCHHHHHHHHHHccCCCHHHHHHH
Confidence 887632111 22345567888888 7888654433
No 220
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=1.8e-06 Score=76.96 Aligned_cols=63 Identities=11% Similarity=0.116 Sum_probs=45.8
Q ss_pred cccCCccceeeccccccccc-----CCC----CCccceEeeecCCCCcC-CCcccCCCCCccEEEEecCCCCC
Q 042791 698 IIAFPKLKYLKIWATEELEE-----TTD----IPRLSSLTIWYCPKLKV-LPDYLLQTTALQELRIWGCPILE 760 (761)
Q Consensus 698 ~~~~~~L~~L~l~~~~~~~~-----~~~----l~~L~~L~l~~~~~l~~-l~~~l~~l~~L~~L~l~~c~~l~ 760 (761)
+.++++|++|+|++|..+++ +.. .++|++|+|++|..++. --..+.++++|+.|+|++|+.++
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 45788888888888876655 333 35789999999876542 11235678899999999998876
No 221
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.99 E-value=6.6e-05 Score=76.27 Aligned_cols=181 Identities=19% Similarity=0.192 Sum_probs=99.0
Q ss_pred CCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHH
Q 042791 7 LIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIA 86 (761)
Q Consensus 7 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 86 (761)
+-.-+.++|.+..++.+...+...... +..+..++++|++|+||||||+.++. .....+ ......-.....++
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~-~~~~~~~ll~Gp~G~GKTTLa~~ia~--~l~~~~---~~~sg~~~~~~~~l- 93 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMR-GEVLDHVLLAGPPGLGKTTLAHIIAS--ELQTNI---HVTSGPVLVKQGDM- 93 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHH-TCCCCCEEEESSTTSSHHHHHHHHHH--HHTCCE---EEEETTTCCSHHHH-
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEechHhcCHHHH-
Confidence 334466899988888887776532100 12345789999999999999999997 443221 11211111111111
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCC------------------CCc
Q 042791 87 KAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL------------------HGS 148 (761)
Q Consensus 87 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~------------------~~~ 148 (761)
.. +...+. ++.++++|+++.......+.+...+.... +..
T Consensus 94 --------------------~~-~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 94 --------------------AA-ILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp --------------------HH-HHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCC
T ss_pred --------------------HH-HHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 11 111122 33477889886543322333332222211 011
Q ss_pred EEEE-Eecchhhhhhc-CC-CCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCchhHHHH
Q 042791 149 KILV-TTRNESVARMM-GS-TDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKVI 220 (761)
Q Consensus 149 ~iii-Ttr~~~~~~~~-~~-~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 220 (761)
.++- |++...+.... .. ...+.+.+.+.++..+++.+.+.... .....+.+..|++.+.|.|..+.-+
T Consensus 152 ~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~----~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD----VEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT----CCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC----CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 2322 33333222211 11 23578999999999999998764321 1234566899999999999755443
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.99 E-value=1.6e-05 Score=90.75 Aligned_cols=148 Identities=14% Similarity=0.135 Sum_probs=81.4
Q ss_pred CCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC-----CeeEEEEecCCCCHHH
Q 042791 10 EGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF-----EKVIWVCVSNTFDQIR 84 (761)
Q Consensus 10 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f-----~~~~~v~~~~~~~~~~ 84 (761)
-+++|||+++++++...+.... ...+.++|++|+|||++|+.+++ .+.... ...-++.+..
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~--~l~~~~~p~~l~~~~~~~~~~------ 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDM------ 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC--------
T ss_pred CCCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHH--HHhcCCCChhhcCCeEEEecc------
Confidence 4569999999999999997533 34578999999999999999997 432211 1111111111
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchhhhh---
Q 042791 85 IAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVAR--- 161 (761)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~--- 161 (761)
.....+ ......... +.......+.++++|.- .+....+...+. ....++|.||.......
T Consensus 245 -----g~~~~G--~~e~~l~~~---~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 245 -----GTKYRG--EFEDRLKKV---MDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp ---------------CTTHHHH---HHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHT
T ss_pred -----cccccc--hHHHHHHHH---HHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhh
Confidence 000000 001122222 22233356789999922 222223333332 22456776666543111
Q ss_pred ---hc-CCCCeeecCCCChHHHHHHHHHHh
Q 042791 162 ---MM-GSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 162 ---~~-~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
.+ .....+.++..+.++..+++....
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11 123568999999999999998754
No 223
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.98 E-value=3.3e-06 Score=83.28 Aligned_cols=164 Identities=15% Similarity=0.105 Sum_probs=88.2
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCcc------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSE------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
.+.+.-++++|.+...+.+.+.+.....+ +...++.+.|+|++|+|||++|++++. .....|- .+.+..
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~--~~~~~~~---~v~~~~ 79 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG--EAHVPFF---SMGGSS 79 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH--HHTCCCC---CCCSCT
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCEE---EechHH
Confidence 45566778999999988888766421000 011234478999999999999999997 4433331 122211
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCc---------------cCchhHHHhhcC
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDY---------------NKWQPFFRCLKN 143 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~---------------~~~~~l~~~~~~ 143 (761)
..+. ..+...... ... +.......+.+|++||++.... ..+..++..+..
T Consensus 80 ~~~~---------~~~~~~~~~---~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 80 FIEM---------FVGLGASRV---RDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp TTTS---------CSSSCSSSS---STT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred HHHh---------hcchHHHHH---HHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 1000 001111111 111 1111123567999999965211 122334333332
Q ss_pred CC---CCcEEEEEecchhhhh-hc----CCCCeeecCCCChHHHHHHHHHHhh
Q 042791 144 GL---HGSKILVTTRNESVAR-MM----GSTDSISIKQLAEEECWSLFKQLAF 188 (761)
Q Consensus 144 ~~---~~~~iiiTtr~~~~~~-~~----~~~~~~~l~~l~~~ea~~l~~~~~~ 188 (761)
.. ....||.||....... .. .....+.+...+.++..+++...+.
T Consensus 145 ~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 145 FGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp SSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred cccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 21 1245666666443211 11 1235688999999999999987763
No 224
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.98 E-value=1.6e-05 Score=81.27 Aligned_cols=137 Identities=18% Similarity=0.159 Sum_probs=85.5
Q ss_pred CCceEEEEEeecCCCCCcccccCCCceeEEEEcccCCCCCCCchhhHHHHh-ccCCcceEEeeccc--cccCCccccccc
Q 042791 373 GVKVRHLGLNFQRGASFPMSFFEFDRLRSLLIYDRSYSNGSLNGSILQELF-SKLACLRALVISQF--YISGSHHEANRI 449 (761)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~--~~~~~~~~~~~l 449 (761)
...++.|.+..+....++. + .+++|+.|.|..+.+ .......+. ..+++|+.|+|+.+ ...+ +..+
T Consensus 171 ~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l-----~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~----~~~~ 239 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGL-----PDSVVEDILGSDLPNLEKLVLYVGVEDYGF----DGDM 239 (362)
T ss_dssp CTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBC-----CHHHHHHHHHSBCTTCCEEEEECBCGGGTC----CSCG
T ss_pred CCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCC-----ChHHHHHHHHccCCCCcEEEEecccccccc----chhH
Confidence 3577788887664334443 3 378899999877664 233333322 37899999998642 1111 2223
Q ss_pred cccccch--hcccccCccccCCcCCcc-Cchhhh---ccCCCcEEecCCccCccc----ccccccccccccEeecCCccc
Q 042791 450 KEIPENV--GKLIHLKYLNLSELGIER-LPETLC---ELYNLQKLDIRRCRNLRE----LPAGIGKLMNMRTLLNGETYA 519 (761)
Q Consensus 450 ~~lp~~~--~~l~~L~~L~l~~~~i~~-lp~~~~---~l~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~ 519 (761)
+.+...+ ..+++|++|++++|.+.. .+..+. .+++|++|+|+.|..... ++..+..+++|+.|++++|.+
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 3333223 357889999998888762 233332 477899999988774432 444556778888998888854
Q ss_pred c
Q 042791 520 L 520 (761)
Q Consensus 520 ~ 520 (761)
.
T Consensus 320 ~ 320 (362)
T 2ra8_A 320 S 320 (362)
T ss_dssp C
T ss_pred C
Confidence 4
No 225
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.97 E-value=8.7e-06 Score=78.65 Aligned_cols=82 Identities=18% Similarity=0.138 Sum_probs=50.2
Q ss_pred ccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCCccCchhhhccC--CCcEEecCCccCcccccc
Q 042791 424 SKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIERLPETLCELY--NLQKLDIRRCRNLRELPA 501 (761)
Q Consensus 424 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~--~L~~L~l~~~~~~~~lp~ 501 (761)
.++++|+.|+|++|.+.+ +..+|..+..+++|++|+|++|.++.+ ..+..+. +|++|+|++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~-------l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYR-------LDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHCTTCCEEECTTSCCCC-------CGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hhCCCCCEEECCCCCCCC-------CccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCc
Confidence 567777777777766654 223445556677777777777777655 2344444 677777777765544442
Q ss_pred -------cccccccccEee
Q 042791 502 -------GIGKLMNMRTLL 513 (761)
Q Consensus 502 -------~~~~l~~L~~L~ 513 (761)
.+..+++|+.||
T Consensus 239 ~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHHCTTCCEES
T ss_pred chhHHHHHHHHCcccCeEC
Confidence 234566666654
No 226
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.96 E-value=5.9e-06 Score=72.59 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=51.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGK 117 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 117 (761)
...++|+|+.|+|||||++.++. .....-..++|+........ ..+ .+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~--~~~~~g~~~~~~~~~~~~~~-----------------------------~~~-~~ 83 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVA--QALEAGKNAAYIDAASMPLT-----------------------------DAA-FE 83 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHH--HHHTTTCCEEEEETTTSCCC-----------------------------GGG-GG
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEcHHHhhHH-----------------------------HHH-hC
Confidence 35789999999999999999997 33332223667765442211 011 23
Q ss_pred eEEEEEeCCCCCCccCchhHHHhhcCC-CCCc-EEEEEecc
Q 042791 118 KNFLVLDDVWDGDYNKWQPFFRCLKNG-LHGS-KILVTTRN 156 (761)
Q Consensus 118 ~~LlvlDd~~~~~~~~~~~l~~~~~~~-~~~~-~iiiTtr~ 156 (761)
.-++|+||+........+.+...+... ..|. ++|+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 458899999654332333444433321 1233 48888874
No 227
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.95 E-value=0.0001 Score=82.31 Aligned_cols=184 Identities=11% Similarity=0.071 Sum_probs=102.0
Q ss_pred cCCCCCCceecccchHHHHHHHHhc----CC---ccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEec
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLC----ES---SEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 77 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~----~~---~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (761)
.|.+.-+++.|-++..++|.+.+.- +. .-+-..++-|.++|++|+|||+||++++. +.... .+.+.+.
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~---~~~v~~~ 272 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF---FFLINGP 272 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCE---EEEEEHH
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCe---EEEEEhH
Confidence 3445566788999998888877542 11 00123467899999999999999999998 33322 2334322
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCcHH-HHHHHHHHHhCCceEEEEEeCCCCCC------ccC-----chhHHHhhcCC-
Q 042791 78 NTFDQIRIAKAIIEGLGESASGLNEFQ-SLMSRIQSSIKGKKNFLVLDDVWDGD------YNK-----WQPFFRCLKNG- 144 (761)
Q Consensus 78 ~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~l~~~~~LlvlDd~~~~~------~~~-----~~~l~~~~~~~- 144 (761)
. + ... ...+.+ .+...+.......+.+|+||+++... ... ...++..+...
T Consensus 273 ~------l----~sk------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~ 336 (806)
T 3cf2_A 273 E------I----MSK------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp H------H----HSS------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC
T ss_pred H------h----hcc------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc
Confidence 1 1 110 011112 22233334445678999999996511 011 12223222222
Q ss_pred -CCCcEEEEEecchh-hhhhc----CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 145 -LHGSKILVTTRNES-VARMM----GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 145 -~~~~~iiiTtr~~~-~~~~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
..+..||.||.... +-..+ .....+++...+.++..+++..+...... .. .-....+++.+.|.-
T Consensus 337 ~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~----dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 337 QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-AD----DVDLEQVANETHGHV 407 (806)
T ss_dssp GGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CT----TCCHHHHHHHCCSCC
T ss_pred ccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-Cc----ccCHHHHHHhcCCCC
Confidence 12334555555432 22211 23457899999999999999887532211 11 112566788887754
No 228
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.88 E-value=1.9e-05 Score=89.99 Aligned_cols=156 Identities=13% Similarity=0.222 Sum_probs=92.0
Q ss_pred CceecccchHHHHHHHHhcCCccC---CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQ---QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAK 87 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~---~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (761)
..++|.+..++.+.+.+....... ......+.++|++|+|||++|+++++ ...+.....+.++++........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~--~l~~~~~~~i~i~~s~~~~~~~~-- 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE--SIFGDEESMIRIDMSEYMEKHST-- 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH--HHHSCTTCEEEEEGGGGCSSCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH--HhcCCCcceEEEechhccccccc--
Confidence 458899999988888877543210 11223789999999999999999998 44443444666666543211000
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCC-----------CCcEEEEEecc
Q 042791 88 AIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTRN 156 (761)
Q Consensus 88 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~~~~iiiTtr~ 156 (761)
. .......++. ...-+++||+++......+..+...+..+. ...+||.||..
T Consensus 567 -----------~---~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 567 -----------S---GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp -----------C------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred -----------c---cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0 0111111111 233489999998766666677776665421 23578888762
Q ss_pred -----hh--------hhhh-cCC-CCeeecCCCChHHHHHHHHHHh
Q 042791 157 -----ES--------VARM-MGS-TDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 157 -----~~--------~~~~-~~~-~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
.. +.+. ... ...+.+.++++++..+++...+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 10 1111 111 3578999999999888887654
No 229
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.85 E-value=9.2e-05 Score=73.51 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..++.++++|++|+|||++|+++++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999999998
No 230
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.83 E-value=2.9e-05 Score=81.33 Aligned_cols=142 Identities=13% Similarity=0.121 Sum_probs=82.9
Q ss_pred eEEEEEeecCCCCCc-ccccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccccc
Q 042791 376 VRHLGLNFQRGASFP-MSFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPE 454 (761)
Q Consensus 376 ~~~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~ 454 (761)
++.+.+-. .+..+. .+|.+|++|+.+.+..+.-+. ...+...+|..|.+|+.+.+.. .++.++.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~---l~~Ig~~aF~~c~~L~~i~~~~-----------~~~~I~~ 130 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSC---VKKIGRQAFMFCSELTDIPILD-----------SVTEIDS 130 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCC---CCEECTTTTTTCTTCCBCGGGT-----------TCSEECT
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCe---eeEechhhchhcccceeeccCC-----------ccceehh
Confidence 45555532 233443 478999999999997753111 1122334578888888776643 2333432
Q ss_pred -chhcccccCccccCCcCCccCc-hhhhccCCCcEEecCCccCcccccccccccccccEeecCCccccccccccCCCCCC
Q 042791 455 -NVGKLIHLKYLNLSELGIERLP-ETLCELYNLQKLDIRRCRNLRELPAGIGKLMNMRTLLNGETYALKYMPIGISKLTN 532 (761)
Q Consensus 455 -~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 532 (761)
.+..+.+|+.+.+..+ +..++ ..+..+..|+.+.+.++ +..+....-...+|+.+.+..+ ....-...+..+.+
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~ 206 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFA 206 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTT
T ss_pred hhhhhhcccccccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECCc-ccccccchhhhccc
Confidence 3667888998888654 33333 46778899999998764 4444433333456877777554 11222233555555
Q ss_pred Cccc
Q 042791 533 LRTL 536 (761)
Q Consensus 533 L~~L 536 (761)
+...
T Consensus 207 l~~~ 210 (394)
T 4gt6_A 207 LSTI 210 (394)
T ss_dssp CCEE
T ss_pred ccee
Confidence 5544
No 231
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=1.1e-05 Score=71.86 Aligned_cols=91 Identities=8% Similarity=0.093 Sum_probs=50.0
Q ss_pred CceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcC-Cc-c
Q 042791 397 DRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELG-IE-R 474 (761)
Q Consensus 397 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~-i~-~ 474 (761)
-.|+.|+++++.+.+..+ .. +.+|++|+.|+|++|.-.+ +.++..+...-..+++|++|++++|. |+ .
T Consensus 61 ~~L~~LDLs~~~Itd~GL-----~~-L~~~~~L~~L~L~~C~~It----D~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF-----DH-MEGLQYVEKIRLCKCHYIE----DGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCEEEEEEESCCCCGGGG-----GG-GTTCSCCCEEEEESCTTCC----HHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ceEeEEeCcCCCccHHHH-----HH-hcCCCCCCEEEeCCCCccC----HHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 457777777776533222 22 4677778888887764222 33333332110013467777777764 55 1
Q ss_pred CchhhhccCCCcEEecCCccCcc
Q 042791 475 LPETLCELYNLQKLDIRRCRNLR 497 (761)
Q Consensus 475 lp~~~~~l~~L~~L~l~~~~~~~ 497 (761)
--..+..+++|+.|++++|..++
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCC
Confidence 12345566777777777776544
No 232
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.71 E-value=7.4e-05 Score=76.04 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=87.9
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAII 90 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 90 (761)
..++|+++.++.+...+... +.+.++|++|+|||++|+++++ ..... ...+.+.......++....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~--~~~~~---~~~i~~~~~~~~~~l~g~~- 92 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAK--TMDLD---FHRIQFTPDLLPSDLIGTM- 92 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHH--HTTCC---EEEEECCTTCCHHHHHEEE-
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHH--HhCCC---eEEEecCCCCChhhcCCce-
Confidence 56899999999988888643 3588999999999999999997 34322 2334444333333322110
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhC-C--ceEEEEEeCCCCCCccCchhHHHhhcCC-----------CCCcEEEEEecc
Q 042791 91 EGLGESASGLNEFQSLMSRIQSSIK-G--KKNFLVLDDVWDGDYNKWQPFFRCLKNG-----------LHGSKILVTTRN 156 (761)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~l~-~--~~~LlvlDd~~~~~~~~~~~l~~~~~~~-----------~~~~~iiiTtr~ 156 (761)
....... .. ... + ...++++|+++.........+...+... .....||.|+..
T Consensus 93 --~~~~~~~--~~---------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 93 --IYNQHKG--NF---------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp --EEETTTT--EE---------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred --eecCCCC--ce---------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 0000000 00 000 0 1248999999876555555555554421 223445555542
Q ss_pred hh------hhhh-cCCCC-eeecCCCChHHHHHHHHHHhh
Q 042791 157 ES------VARM-MGSTD-SISIKQLAEEECWSLFKQLAF 188 (761)
Q Consensus 157 ~~------~~~~-~~~~~-~~~l~~l~~~ea~~l~~~~~~ 188 (761)
.. +... ..... .+.+...+.++..+++...+.
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 21 1111 11222 589999999999999988764
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.68 E-value=0.00013 Score=79.09 Aligned_cols=160 Identities=17% Similarity=0.198 Sum_probs=77.5
Q ss_pred eecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHH
Q 042791 13 VCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEG 92 (761)
Q Consensus 13 ~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 92 (761)
.+|-++..+.+.+.+.-..-........++++|++|+||||+|+.++. .....| ..+.+........+.......
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~--~l~~~~---~~i~~~~~~~~~~~~g~~~~~ 157 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK--SLGRKF---VRISLGGVRDESEIRGHRRTY 157 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH--HHTCEE---EEECCCC--------------
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH--hcCCCe---EEEEecccchhhhhhhHHHHH
Confidence 567666666655443211100012456899999999999999999997 443332 223333322222221111111
Q ss_pred hcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCcc----CchhHHHhhcCCC---------------CCcEEEEE
Q 042791 93 LGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYN----KWQPFFRCLKNGL---------------HGSKILVT 153 (761)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~----~~~~l~~~~~~~~---------------~~~~iiiT 153 (761)
.+. ........+... ....-++++|+++..... ....++..+.... ....||.|
T Consensus 158 ig~------~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~t 230 (543)
T 3m6a_A 158 VGA------MPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIAT 230 (543)
T ss_dssp ------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEE
T ss_pred hcc------CchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEec
Confidence 111 011112222222 223448899999764332 2234444442211 23456666
Q ss_pred ecch-----hhhhhcCCCCeeecCCCChHHHHHHHHHHh
Q 042791 154 TRNE-----SVARMMGSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 154 tr~~-----~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
|... .+... ...+++.+++.++..+++..+.
T Consensus 231 tN~~~~l~~aL~~R---~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 231 ANNLATIPGPLRDR---MEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CSSTTTSCHHHHHH---EEEEECCCCCHHHHHHHHHHTH
T ss_pred cCccccCCHHHHhh---cceeeeCCCCHHHHHHHHHHHH
Confidence 5542 22222 2478999999999999888765
No 234
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.64 E-value=0.00082 Score=71.23 Aligned_cols=180 Identities=14% Similarity=0.077 Sum_probs=97.6
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCcc------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSE------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT 79 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (761)
+.+.-++++|.++...++.+....-..+ +..-++-|+|+|++|+||||||++++. ... ...+++.....
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~--~~~---~~~i~i~g~~~ 100 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EAR---VPFITASGSDF 100 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH--HTT---CCEEEEEGGGG
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH--HhC---CCEEEEehhHH
Confidence 5566778999988777766553321000 011234489999999999999999997 332 23444544321
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhC----CceEEEEEeCCCCCCcc--------------CchhHHHhh
Q 042791 80 FDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIK----GKKNFLVLDDVWDGDYN--------------KWQPFFRCL 141 (761)
Q Consensus 80 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~----~~~~LlvlDd~~~~~~~--------------~~~~l~~~~ 141 (761)
... . . ......+...++ ..+.++++|+++..... .+..++..+
T Consensus 101 ~~~--------------~--~---g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~L 161 (499)
T 2dhr_A 101 VEM--------------F--V---GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 161 (499)
T ss_dssp TSS--------------C--T---THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHG
T ss_pred HHh--------------h--h---hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHh
Confidence 110 0 0 011112222222 23579999999642110 112333333
Q ss_pred cCCC--CCcEEEEEecchhhhhh-c----CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 142 KNGL--HGSKILVTTRNESVARM-M----GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 142 ~~~~--~~~~iiiTtr~~~~~~~-~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
.... .+..++.||..+.+... + .....+.+...+.++..+++..++..... . .+.....++..+.|+.
T Consensus 162 dg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l-~----~dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 162 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-A----EDVDLALLAKRTPGFV 236 (499)
T ss_dssp GGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC-C----CSSTTHHHHTTSCSCC
T ss_pred cccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCC-C----hHHHHHHHHHhcCCCC
Confidence 3222 23445555655544322 1 22457899999999999999876532111 1 1112456778888876
No 235
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.64 E-value=8.5e-05 Score=74.17 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=39.9
Q ss_pred CCceec----ccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhh-ccCCeeEEEEe
Q 042791 10 EGEVCG----RVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIWVCV 76 (761)
Q Consensus 10 ~~~~vg----r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~-~~f~~~~~v~~ 76 (761)
-+.|++ +...++.+.+++.... ....+.++|+|++|+|||+||.++++ ... .....+.|+.+
T Consensus 123 fd~f~~~~~~~~~~~~~~~~~i~~~~---~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 123 LSDIDVNNASRMEAFSAILDFVEQYP---SAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHF 189 (308)
T ss_dssp GGGSCCCSHHHHHHHHHHHHHHHHCS---CSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEH
T ss_pred HhhCcCCChHHHHHHHHHHHHHHhcc---ccCCceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEH
Confidence 345654 3334445556665432 11246789999999999999999998 444 44445666654
No 236
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.61 E-value=0.00012 Score=83.76 Aligned_cols=166 Identities=13% Similarity=0.204 Sum_probs=89.6
Q ss_pred CceecccchHHHHHHHHhcCCcc---CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSE---QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAK 87 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~---~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (761)
..++|.++.++.+...+.....+ +......+.++|++|+|||++|+++++ ... ...+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~--~l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH--HHT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH--Hhc---CCEEEEechhhcchhh---
Confidence 34789998888888776543210 012235789999999999999999997 342 3344555544322100
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHh-CCceEEEEEeCCCCCCccCchhHHHhhcCCC-----------CCcEEEEEec
Q 042791 88 AIIEGLGESASGLNEFQSLMSRIQSSI-KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTR 155 (761)
Q Consensus 88 ~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~~~~iiiTtr 155 (761)
...+....+.....++ ...+...+ +...-+++||+++......+..+...+.... ....||.||.
T Consensus 530 --~~~l~g~~~g~~g~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp --CSSSCCCCSCSHHHHH-TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred --HhhhcCCCCCCcCccc-cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Confidence 0011111111111111 11122222 2346799999998766666666666655321 1244666665
Q ss_pred ch--------------------------hhhhh-cC-CCCeeecCCCChHHHHHHHHHHh
Q 042791 156 NE--------------------------SVARM-MG-STDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 156 ~~--------------------------~~~~~-~~-~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
.. .+.+. .. ....+.+.++++++..+++...+
T Consensus 607 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 607 AGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp SSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred cchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHH
Confidence 31 00000 01 12457788888877777776654
No 237
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.60 E-value=0.00011 Score=84.94 Aligned_cols=122 Identities=14% Similarity=0.230 Sum_probs=67.5
Q ss_pred ceecccchHHHHHHHHhcCCcc---CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHH
Q 042791 12 EVCGRVDEKNELLSKLLCESSE---QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKA 88 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~~~~~~---~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~ 88 (761)
.++|.+..++.+...+.....+ +......++|+|++|+|||++|++++. ...+.-...+.++++........
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~--~~~~~~~~~i~i~~~~~~~~~~~--- 633 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKHAV--- 633 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH--HHHSSGGGEEEECTTTCCSSGGG---
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH--HhcCCCCcEEEEechhccchhHH---
Confidence 4789999998888887653211 011235889999999999999999997 44332233455655543221100
Q ss_pred HHHHhcCCCCC---CCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcC
Q 042791 89 IIEGLGESASG---LNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKN 143 (761)
Q Consensus 89 i~~~l~~~~~~---~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 143 (761)
..+....+. ......+...+.. ...-+|+||+++......+..+...+..
T Consensus 634 --s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~ 686 (854)
T 1qvr_A 634 --SRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDD 686 (854)
T ss_dssp --GGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTT
T ss_pred --HHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhcc
Confidence 011100000 0000111122221 2346899999987666666677776654
No 238
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.58 E-value=4.5e-05 Score=73.63 Aligned_cols=79 Identities=19% Similarity=0.160 Sum_probs=57.6
Q ss_pred hcccccCccccCCcCCccC---chhhhccCCCcEEecCCccCcccccccccccc--cccEeecCCccccccccc------
Q 042791 457 GKLIHLKYLNLSELGIERL---PETLCELYNLQKLDIRRCRNLRELPAGIGKLM--NMRTLLNGETYALKYMPI------ 525 (761)
Q Consensus 457 ~~l~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~L~l~~~~~~~~~p~------ 525 (761)
.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|.. ..+ ..+..++ +|++|++++|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4678899999999998854 46678899999999999884 333 2345555 899999999987665552
Q ss_pred -cCCCCCCCcccC
Q 042791 526 -GISKLTNLRTLD 537 (761)
Q Consensus 526 -~l~~l~~L~~L~ 537 (761)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 245667777666
No 239
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.57 E-value=0.00071 Score=66.19 Aligned_cols=163 Identities=15% Similarity=0.114 Sum_probs=81.9
Q ss_pred ccCCCCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEe
Q 042791 4 TISLIDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 76 (761)
Q Consensus 4 ~~~~~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~ 76 (761)
..|.+.-+++.|-++..+++.+.+..+-.. .-.-++-++|+|++|+||||||++++. .... ..+++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~--~~~~---~~i~i~g 77 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN--ESGL---NFISVKG 77 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHH--HTTC---EEEEEET
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHH--HcCC---CEEEEEc
Confidence 346667778889888888887654321000 001122389999999999999999997 3322 3444443
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHH-HHHhCCceEEEEEeCCCCCCc-----------cCchhHHHhhcCC
Q 042791 77 SNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRI-QSSIKGKKNFLVLDDVWDGDY-----------NKWQPFFRCLKNG 144 (761)
Q Consensus 77 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~l~~~~~LlvlDd~~~~~~-----------~~~~~l~~~~~~~ 144 (761)
....+. ........+..+ ...-...+.++++|+++.... .....+...+...
T Consensus 78 ~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg 141 (274)
T 2x8a_A 78 PELLNM----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGL 141 (274)
T ss_dssp TTTCSS----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTC
T ss_pred HHHHhh----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcc
Confidence 221110 000011111111 111123568999999964210 0112223333322
Q ss_pred C--CCcEEEEEecchhhhhhc-----CCCCeeecCCCChHHHHHHHHHHh
Q 042791 145 L--HGSKILVTTRNESVARMM-----GSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 145 ~--~~~~iiiTtr~~~~~~~~-----~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
. ...-++.+|..+.+.+.. .....+.+...+.++..+++..+.
T Consensus 142 ~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 142 EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp CSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred cccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 1 223345556555443321 235678899999999999998865
No 240
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.46 E-value=0.00012 Score=68.45 Aligned_cols=114 Identities=13% Similarity=0.026 Sum_probs=65.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCC--CCcHHHHHHHHHHHh
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASG--LNEFQSLMSRIQSSI 114 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l 114 (761)
+..+++++|++|+||||++..++. +.......++++....... ....++++++..... .....++.+.+.+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 357899999999999999988887 5554444556664433211 112334444432211 223344555555544
Q ss_pred CCc-eEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchh
Q 042791 115 KGK-KNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNES 158 (761)
Q Consensus 115 ~~~-~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~ 158 (761)
... .-+||+|++.....+..+.+ ..+.+. +..||+|.+..+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~~--gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVA-NILAEN--GFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHH-HHHHHT--TCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHH-HHHHhC--CCeEEEEecccc
Confidence 434 44999999965433333333 223332 677999988654
No 241
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.45 E-value=0.0016 Score=63.24 Aligned_cols=185 Identities=13% Similarity=0.064 Sum_probs=92.6
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCcc------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSE------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
.|.+.-++++|.++...++.+....-... .-.-++-++|+|++|+||||||++++. ... ...+.+..
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~--~~~---~~~i~~~~-- 82 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EAR---VPFITASG-- 82 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH--HTT---CCEEEEEH--
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhC---CCEEEeeH--
Confidence 34555667899887766665443211000 001122389999999999999999997 332 22333422
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCC----------cc----CchhHHHhhcCC
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGD----------YN----KWQPFFRCLKNG 144 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~----------~~----~~~~l~~~~~~~ 144 (761)
.++. .... ......+...++..-.....++++|+++... .. ....+...+...
T Consensus 83 ----~~~~----~~~~-----~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~ 149 (254)
T 1ixz_A 83 ----SDFV----EMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 149 (254)
T ss_dssp ----HHHH----HSCT-----THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTC
T ss_pred ----HHHH----HHHh-----hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCC
Confidence 1111 1100 0001111122222223456899999994310 00 112333333322
Q ss_pred CC--CcEEEEEecchhhhhh-c----CCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 145 LH--GSKILVTTRNESVARM-M----GSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 145 ~~--~~~iiiTtr~~~~~~~-~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
.. ...++.||..+.+... + .....++++..+.++..+++..++... ... .+.....+++.+.|.-
T Consensus 150 ~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~----~~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 150 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLA----EDVDLALLAKRTPGFV 221 (254)
T ss_dssp CTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS-CBC----TTCCHHHHHHTCTTCC
T ss_pred CCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC-CCC----cccCHHHHHHHcCCCC
Confidence 21 2234445555443322 1 224578899999999999988765321 111 1112456777777754
No 242
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.43 E-value=0.00064 Score=77.34 Aligned_cols=162 Identities=12% Similarity=0.069 Sum_probs=89.2
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
+.+.-++++|.+..++++.+++..+-.+ .-...+.|+|+|++|+||||||++++. ..... .+.+.+..
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~--~l~~~---~i~v~~~~ 273 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF---FFLINGPE 273 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH--TTTCE---EEEEEHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCc---EEEEEchH
Confidence 3455577999999999999887541000 013356789999999999999999997 33322 23343211
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHH-HHHHHHHHHhCCceEEEEEeCCCCCCc------c-----CchhHHHhhcCC--
Q 042791 79 TFDQIRIAKAIIEGLGESASGLNEFQ-SLMSRIQSSIKGKKNFLVLDDVWDGDY------N-----KWQPFFRCLKNG-- 144 (761)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~l~~~~~LlvlDd~~~~~~------~-----~~~~l~~~~~~~-- 144 (761)
+ .... ..... .....+.......+.++++|+++.... . ....+...+...
T Consensus 274 ------l--------~~~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~ 337 (806)
T 1ypw_A 274 ------I--------MSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp ------H--------SSSS--TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT
T ss_pred ------h--------hhhh--hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc
Confidence 1 0000 01111 122222333334578999999954211 0 112233333322
Q ss_pred CCCcEEEEEecchh-hhhhc----CCCCeeecCCCChHHHHHHHHHHhh
Q 042791 145 LHGSKILVTTRNES-VARMM----GSTDSISIKQLAEEECWSLFKQLAF 188 (761)
Q Consensus 145 ~~~~~iiiTtr~~~-~~~~~----~~~~~~~l~~l~~~ea~~l~~~~~~ 188 (761)
.....+|.||.... +-..+ .....+.+...+.++..+++..++.
T Consensus 338 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 22345555655432 21111 1134578888899999999987653
No 243
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.39 E-value=0.0033 Score=61.81 Aligned_cols=184 Identities=14% Similarity=0.062 Sum_probs=93.0
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCcc------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSE------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT 79 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (761)
|.+.-++++|.++..+++.+....-... .-.-++-++|+|++|+||||||++++. ... ...+++...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~--~~~---~~~i~~~~~-- 107 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EAR---VPFITASGS-- 107 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH--HTT---CCEEEEEHH--
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH--HcC---CCEEEecHH--
Confidence 4556677899887776666543221000 001122388999999999999999997 332 233444321
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCC----------cc----CchhHHHhhcCCC
Q 042791 80 FDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGD----------YN----KWQPFFRCLKNGL 145 (761)
Q Consensus 80 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~----------~~----~~~~l~~~~~~~~ 145 (761)
++. .... ......+...++..-...+.++++|+++... .. ....+...+....
T Consensus 108 ----~~~----~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 108 ----DFV----EMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp ----HHH----HSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred ----HHH----HHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 111 1000 0001111122222223456899999994310 00 1112222233221
Q ss_pred C--CcEEEEEecchhhhhh-----cCCCCeeecCCCChHHHHHHHHHHhhCCCCCCCCCchhHHHHHHHHhcCCCc
Q 042791 146 H--GSKILVTTRNESVARM-----MGSTDSISIKQLAEEECWSLFKQLAFFGCSFEDCEKLEPIGRKIACKCKGLP 214 (761)
Q Consensus 146 ~--~~~iiiTtr~~~~~~~-----~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 214 (761)
. ...++.||..+.+... ......+++...+.++..+++..++... ... .+.....++..+.|+.
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~----~~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLA----EDVDLALLAKRTPGFV 245 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-CBC----TTCCHHHHHHTCTTCC
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC-CCC----cccCHHHHHHHcCCCC
Confidence 1 2234445554433221 1234578999999999999998766321 111 1112456777777765
No 244
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.39 E-value=0.00036 Score=74.09 Aligned_cols=153 Identities=11% Similarity=0.176 Sum_probs=81.7
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAII 90 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 90 (761)
..++|+++.++.+...+... +.|.++|++|+|||++|++++. ..... ....++.+.- .+..++.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~--~l~~~-~~f~~~~~~~-~t~~dL~---- 85 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKF--AFQNA-RAFEYLMTRF-STPEEVF---- 85 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGG--GBSSC-CEEEEECCTT-CCHHHHH----
T ss_pred hhhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHH--HHhhh-hHHHHHHHhc-CCHHHhc----
Confidence 45889999999888887643 3688999999999999999997 33211 1112222221 1333222
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhCC---ceEEEEEeCCCCCCccCchhHHHhhcCCC---------CCcEE-EEEecc-
Q 042791 91 EGLGESASGLNEFQSLMSRIQSSIKG---KKNFLVLDDVWDGDYNKWQPFFRCLKNGL---------HGSKI-LVTTRN- 156 (761)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~LlvlDd~~~~~~~~~~~l~~~~~~~~---------~~~~i-iiTtr~- 156 (761)
+... .. .... ...+....++ ..-++++|+++.........+...+.... .+.++ |+||..
T Consensus 86 ---G~~~-~~-~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~l 159 (500)
T 3nbx_X 86 ---GPLS-IQ-ALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNEL 159 (500)
T ss_dssp ---CCBC-------------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSC
T ss_pred ---Cccc-HH-HHhh-chhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccC
Confidence 1100 00 0000 0001011111 23479999998766666666666654211 12234 566642
Q ss_pred h-------hhhhhcCCCCeeecCCCCh-HHHHHHHHHHh
Q 042791 157 E-------SVARMMGSTDSISIKQLAE-EECWSLFKQLA 187 (761)
Q Consensus 157 ~-------~~~~~~~~~~~~~l~~l~~-~ea~~l~~~~~ 187 (761)
+ .+...+ ...+.++..++ ++..+++....
T Consensus 160 pe~~~~~~aLldRF--~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 160 PEADSSLEALYDRM--LIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCTTCTTHHHHTTC--CEEEECCSCCCHHHHHHHHTCCC
T ss_pred CCccccHHHHHHHH--HHHHHHHHhhhhhhHHHHHhccc
Confidence 1 122211 33578888887 55567776543
No 245
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.38 E-value=0.00081 Score=69.60 Aligned_cols=49 Identities=29% Similarity=0.224 Sum_probs=34.8
Q ss_pred ceecccchHHHHHHHHh----cCCc--------------------cCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 12 EVCGRVDEKNELLSKLL----CESS--------------------EQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~----~~~~--------------------~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.++|.++..+.+...+. .... ........+.++|++|+|||++|+++++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 47898888888877662 0000 0011235688999999999999999997
No 246
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.35 E-value=0.00045 Score=70.86 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=35.8
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
++..-++++|.+...+.+........ .+.|.|+|++|+|||++|+++++
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHH
T ss_pred CCCCchhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHH
Confidence 44455679999886666554444221 23488999999999999999997
No 247
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.33 E-value=0.00055 Score=76.50 Aligned_cols=163 Identities=14% Similarity=0.109 Sum_probs=85.2
Q ss_pred cCCCCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEec
Q 042791 5 ISLIDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 77 (761)
Q Consensus 5 ~~~~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (761)
.|.+.-++..|.++..+++.+.+.-+-.. +...++-|.++|++|+|||.+|++++. +.... |+.+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~-----f~~v- 542 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQAN-----FISI- 542 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCE-----EEEC-
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCc-----eEEe-
Confidence 34556667778888888887765543211 123356688999999999999999998 33322 2222
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCC----------c----cCchhHHHhhcC
Q 042791 78 NTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGD----------Y----NKWQPFFRCLKN 143 (761)
Q Consensus 78 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~----------~----~~~~~l~~~~~~ 143 (761)
+..+ +.....+ .....+.+.+..+-+..+.+|+||++|.-- . .....++..+..
T Consensus 543 ---~~~~----l~s~~vG-----ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg 610 (806)
T 3cf2_A 543 ---KGPE----LLTMWFG-----ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 610 (806)
T ss_dssp ---CHHH----HHTTTCS-----SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHS
T ss_pred ---ccch----hhccccc-----hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhC
Confidence 2222 2211111 112233333344445678999999996410 0 012334444443
Q ss_pred CCC-CcEEEE-Eecc-----hhhhhhcCCCCeeecCCCChHHHHHHHHHHh
Q 042791 144 GLH-GSKILV-TTRN-----ESVARMMGSTDSISIKQLAEEECWSLFKQLA 187 (761)
Q Consensus 144 ~~~-~~~iii-Ttr~-----~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 187 (761)
... ...+|| ||.. +.+.+.-.....+++...+.++..++|..+.
T Consensus 611 ~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 611 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 222 222333 4432 2333211235678888878888888887665
No 248
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.21 E-value=0.00029 Score=63.69 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=67.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC---CCHHHHHHHHHHH---hcCCCC--C------CCcH
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT---FDQIRIAKAIIEG---LGESAS--G------LNEF 103 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~---~~~~~~~~~i~~~---l~~~~~--~------~~~~ 103 (761)
...|.|++..|.||||.|-.++- +..++-..|.++...+. .....++..+.-. .+.... . ....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 35677888888999999988886 55555556777755442 2233333333100 000000 0 0112
Q ss_pred HHHHHHHHHHhCCceE-EEEEeCCCC---CCccCchhHHHhhcCCCCCcEEEEEecch
Q 042791 104 QSLMSRIQSSIKGKKN-FLVLDDVWD---GDYNKWQPFFRCLKNGLHGSKILVTTRNE 157 (761)
Q Consensus 104 ~~~~~~~~~~l~~~~~-LlvlDd~~~---~~~~~~~~l~~~~~~~~~~~~iiiTtr~~ 157 (761)
......+++.+.+.++ |+|+|++-. -.....+.+...+.......-||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 2334445555555555 999999821 12345566666676666667799999983
No 249
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.20 E-value=0.0002 Score=70.16 Aligned_cols=69 Identities=17% Similarity=0.262 Sum_probs=45.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEe--cCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV--SNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIK 115 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 115 (761)
.+.+.|+|++|+|||+||.+++. . ....++|++. ....+ .. ..+.+...+.+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~--~---~G~~VlyIs~~~eE~v~-------------~~---~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGE--A---LGGKDKYATVRFGEPLS-------------GY---NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHH--H---HHTTSCCEEEEBSCSST-------------TC---BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH--h---CCCCEEEEEecchhhhh-------------hh---hcCHHHHHHHHHHHHh
Confidence 46788999999999999999986 3 2224567777 22210 00 0345566666666665
Q ss_pred CceEEEEEeCCCC
Q 042791 116 GKKNFLVLDDVWD 128 (761)
Q Consensus 116 ~~~~LlvlDd~~~ 128 (761)
..+ ++|+|++..
T Consensus 182 ~~~-LLVIDsI~a 193 (331)
T 2vhj_A 182 QHR-VIVIDSLKN 193 (331)
T ss_dssp HCS-EEEEECCTT
T ss_pred hCC-EEEEecccc
Confidence 445 999999943
No 250
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.18 E-value=0.002 Score=60.82 Aligned_cols=85 Identities=21% Similarity=0.251 Sum_probs=52.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcC------------CCCCCCcHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGE------------SASGLNEFQ 104 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~------------~~~~~~~~~ 104 (761)
...++.|.|++|+||||++..++. ..-..++|+......+...+.. +....+. ......+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 346899999999999999999986 2235688888776555554443 2222211 111122223
Q ss_pred HHHHHHHHHhCCceEEEEEeCCC
Q 042791 105 SLMSRIQSSIKGKKNFLVLDDVW 127 (761)
Q Consensus 105 ~~~~~~~~~l~~~~~LlvlDd~~ 127 (761)
.....+......+.-++|+|.+.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 34444444444457799999984
No 251
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.17 E-value=0.0015 Score=67.70 Aligned_cols=15 Identities=7% Similarity=0.142 Sum_probs=9.3
Q ss_pred cccCCCceeEEEEcc
Q 042791 392 SFFEFDRLRSLLIYD 406 (761)
Q Consensus 392 ~~~~~~~L~~L~l~~ 406 (761)
+|.+|.+|+.+.|..
T Consensus 64 aF~~C~~L~~I~lp~ 78 (379)
T 4h09_A 64 NFNSCYNMTKVTVAS 78 (379)
T ss_dssp TTTTCTTCCEEEECT
T ss_pred HhhCCCCCCEEEeCC
Confidence 566666666666643
No 252
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.11 E-value=0.0062 Score=62.01 Aligned_cols=155 Identities=10% Similarity=-0.021 Sum_probs=100.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhh-hccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HhC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEV-KRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQS-SIK 115 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~-~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~ 115 (761)
.++.+++|+.|.||++.++++.+ .. ...|+....+......+. .++.+.+.. -+-
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~---------------------~~l~~~~~~~plf 74 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQ--VAAAQGFEEHHTFSIDPNTDW---------------------NAIFSLCQAMSLF 74 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHH--HHHHHTCCEEEEEECCTTCCH---------------------HHHHHHHHHHHHC
T ss_pred CcEEEEECCcHHHHHHHHHHHHH--HHHhCCCCeeEEEEecCCCCH---------------------HHHHHHhcCcCCc
Confidence 46889999999999999999987 33 234432222222222222 333322221 234
Q ss_pred CceEEEEEeCCCC-CCccCchhHHHhhcCCCCCcEEEEEecc-------hhhhhhc-CCCCeeecCCCChHHHHHHHHHH
Q 042791 116 GKKNFLVLDDVWD-GDYNKWQPFFRCLKNGLHGSKILVTTRN-------ESVARMM-GSTDSISIKQLAEEECWSLFKQL 186 (761)
Q Consensus 116 ~~~~LlvlDd~~~-~~~~~~~~l~~~~~~~~~~~~iiiTtr~-------~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~ 186 (761)
+++-++|+|+++. .....++.+...+....+++.+|+++.. ..+.+.+ .....++..+++.++..+.+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5677889999976 5556677788877766667777766543 2344443 23467899999999999888887
Q ss_pred hhCCCCCCCCCchhHHHHHHHHhcCCCchhHHH
Q 042791 187 AFFGCSFEDCEKLEPIGRKIACKCKGLPLAAKV 219 (761)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 219 (761)
+...+. ....+.+..+++.++|.+..+..
T Consensus 155 ~~~~g~----~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNL----ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTC----EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCC----CCCHHHHHHHHHHhchHHHHHHH
Confidence 643221 23345678899999998876654
No 253
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.03 E-value=0.00062 Score=70.72 Aligned_cols=81 Identities=11% Similarity=0.173 Sum_probs=43.6
Q ss_pred cccCCCceeEEEEcccCCCCCCCchhhHHHHhccCCcceEEeeccccccCCcccccccccccc-chhcccccCccccCCc
Q 042791 392 SFFEFDRLRSLLIYDRSYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPE-NVGKLIHLKYLNLSEL 470 (761)
Q Consensus 392 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~-~~~~l~~L~~L~l~~~ 470 (761)
.+....+|+.+.+...- ..+...+|.+|.+|+.++|..+ ++.++. .|.++ +|+.+.+..+
T Consensus 41 ~~~~~~~i~~v~ip~~v-------t~Ig~~aF~~C~~L~~I~lp~~-----------v~~Ig~~aF~~c-~l~~i~~~~~ 101 (379)
T 4h09_A 41 WYKDRDRISEVRVNSGI-------TSIGEANFNSCYNMTKVTVAST-----------VTSIGDGAFADT-KLQSYTGMER 101 (379)
T ss_dssp TGGGGGGCSEEEECTTE-------EEECTTTTTTCTTCCEEEECTT-----------CCEECTTTTTTC-CCCEEEECTT
T ss_pred ccccccCCEEEEeCCCc-------cChHHHHhhCCCCCCEEEeCCc-----------ceEechhhhcCC-CCceEECCce
Confidence 45667788888775531 2334456888999999988632 223332 23333 3444444322
Q ss_pred CCccCchhhhccCCCcEEecCC
Q 042791 471 GIERLPETLCELYNLQKLDIRR 492 (761)
Q Consensus 471 ~i~~lp~~~~~l~~L~~L~l~~ 492 (761)
++.++...-...+|+.+.+.+
T Consensus 102 -l~~I~~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 102 -VKKFGDYVFQGTDLDDFEFPG 122 (379)
T ss_dssp -CCEECTTTTTTCCCSEEECCT
T ss_pred -eeEeccceeccCCcccccCCC
Confidence 333333222223677777654
No 254
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.86 E-value=0.0026 Score=64.06 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCC--
Q 042791 20 KNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESA-- 97 (761)
Q Consensus 20 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~-- 97 (761)
...|...|.... -....++.|.|++|+||||||.+++. .....-..++|++.....+.. .+++++...
T Consensus 46 ~~~LD~~Lg~GG---i~~G~i~~I~GppGsGKSTLal~la~--~~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~ 115 (356)
T 3hr8_A 46 SLAIDIATGVGG---YPRGRIVEIFGQESSGKTTLALHAIA--EAQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKS 115 (356)
T ss_dssp CHHHHHHTSSSS---EETTEEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGG
T ss_pred CHHHHHHhccCC---ccCCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEecccccchH-----HHHHcCCchhh
Confidence 445555554111 23457999999999999999999997 444333458899877665543 334443321
Q ss_pred ---CCCCcHHHHHHHHHHHhC-CceEEEEEeCCC
Q 042791 98 ---SGLNEFQSLMSRIQSSIK-GKKNFLVLDDVW 127 (761)
Q Consensus 98 ---~~~~~~~~~~~~~~~~l~-~~~~LlvlDd~~ 127 (761)
......++....+....+ ...-++|+|.+.
T Consensus 116 l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 116 LLISQPDHGEQALEIVDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp CEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred hhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhh
Confidence 123345555555554443 344588999883
No 255
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.82 E-value=0.0049 Score=58.75 Aligned_cols=115 Identities=18% Similarity=0.075 Sum_probs=61.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCC-------------------
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESAS------------------- 98 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~------------------- 98 (761)
..+++|.|++|+|||||++.++. .....-..++|+.... ....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~--~~~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA--KGLRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH--HHHHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH--HHHHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 46899999999999999999996 3333334567776543 3444433332 2221100
Q ss_pred ----CCCcHHHHHHHHHHHh---CCceEEEEEeCCCCC---CccCchhHHHhhcCC--CCCcEEEEEecch
Q 042791 99 ----GLNEFQSLMSRIQSSI---KGKKNFLVLDDVWDG---DYNKWQPFFRCLKNG--LHGSKILVTTRNE 157 (761)
Q Consensus 99 ----~~~~~~~~~~~~~~~l---~~~~~LlvlDd~~~~---~~~~~~~l~~~~~~~--~~~~~iiiTtr~~ 157 (761)
...+..+....+...+ +.+..++|+|+.... +......+...+... ..+..||+++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0113444444444433 333459999998431 222233333333321 2366688887764
No 256
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.81 E-value=0.0056 Score=59.64 Aligned_cols=82 Identities=12% Similarity=0.188 Sum_probs=53.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcc--CCeeEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCcHHHH-HHHH
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSNTFDQIRIAKAIIEGLGESAS-----GLNEFQSL-MSRI 110 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~--f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~~ 110 (761)
.++.|+|++|+|||||+.+++. ..... -..++|++.....+.. .+++++.... .....++. .+.+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 3789999999999999988876 34333 3568999988776653 2555654322 12344554 3333
Q ss_pred HHH--hC-CceEEEEEeCCC
Q 042791 111 QSS--IK-GKKNFLVLDDVW 127 (761)
Q Consensus 111 ~~~--l~-~~~~LlvlDd~~ 127 (761)
... ++ .+.-++|+|-+.
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHHTCCTTCCEEEEEECST
T ss_pred HHHHHhhccCceEEEEeccc
Confidence 222 33 457799999883
No 257
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.77 E-value=0.00034 Score=63.73 Aligned_cols=108 Identities=14% Similarity=0.054 Sum_probs=51.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCC--CCCcHHHHHHHHHHHhCC
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESAS--GLNEFQSLMSRIQSSIKG 116 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~~l~~ 116 (761)
++++++|+.|+||||++.+++. +....-..++++....... .-...+....+.... ...+.. .+.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~--~~~~~g~~v~~~~~~~d~r--~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE--IYKLGKKKVAVFKPKIDSR--YHSTMIVSHSGNGVEAHVIERPE----EMRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH--HHHHTTCEEEEEEEC-------CCCEECC----CEECEEESSGG----GGGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeeccccc--cCcccEEecCCCceeeEEECCHH----HHHHHhcC
Confidence 5788999999999999977765 3322222344443321100 000000001111000 001111 12223334
Q ss_pred ceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecch
Q 042791 117 KKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE 157 (761)
Q Consensus 117 ~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~ 157 (761)
+.-+|++|+++..+....+.+ ..+.+. +..|++|.+..
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l-~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVV-KDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHH-HHHHHT--TCEEEEEEESB
T ss_pred CCCEEEEECcccCCHHHHHHH-HHHHHC--CCCEEEEeecc
Confidence 566999999976543333333 323222 66799988753
No 258
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.76 E-value=0.0041 Score=63.15 Aligned_cols=84 Identities=18% Similarity=0.249 Sum_probs=54.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCcHHHHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESA-----SGLNEFQSLMSRIQ 111 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~~ 111 (761)
..+++.|.|++|+||||+|.+++. .....-..++|++........ .++.++... ......++..+.+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~--~~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVA--QAQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHH--HHHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 356899999999999999988886 343334578999987765543 133443321 11234556666565
Q ss_pred HHhC-CceEEEEEeCCC
Q 042791 112 SSIK-GKKNFLVLDDVW 127 (761)
Q Consensus 112 ~~l~-~~~~LlvlDd~~ 127 (761)
...+ ...-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 5554 334589999984
No 259
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.75 E-value=0.0037 Score=63.22 Aligned_cols=84 Identities=19% Similarity=0.215 Sum_probs=54.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESAS-----GLNEFQSLMSRIQ 111 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~ 111 (761)
..+++.|.|++|+||||||.+++. .....-..++|++.....+.. .++.++.... .....++..+.+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~--~~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVA--NAQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 356899999999999999999886 344444568899887755543 2344442211 1234555555454
Q ss_pred HHhC-CceEEEEEeCCC
Q 042791 112 SSIK-GKKNFLVLDDVW 127 (761)
Q Consensus 112 ~~l~-~~~~LlvlDd~~ 127 (761)
...+ .+.-++|+|.+.
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 4443 345599999984
No 260
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.60 E-value=0.0031 Score=63.89 Aligned_cols=83 Identities=18% Similarity=0.252 Sum_probs=51.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESAS-----GLNEFQSLMSRIQ 111 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~ 111 (761)
..+++.|.|++|+||||+|.+++. .....-..++|++.....+... +..++.... .....++..+.+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~--~~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 356899999999999999998887 3443445688999877655431 334433211 1123444444443
Q ss_pred HHhC-CceEEEEEeCC
Q 042791 112 SSIK-GKKNFLVLDDV 126 (761)
Q Consensus 112 ~~l~-~~~~LlvlDd~ 126 (761)
...+ ...-+||+|.+
T Consensus 135 ~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 135 ALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHTCCSEEEEECG
T ss_pred HHHhccCCCEEEEcCH
Confidence 3322 33458999987
No 261
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.60 E-value=0.00096 Score=60.64 Aligned_cols=117 Identities=14% Similarity=0.071 Sum_probs=59.3
Q ss_pred cCCCceeEEEEccc-CCCCCCCchhhHHHHhccCCcceEEeeccccccCCccccccccccccchhcccccCccccCCcCC
Q 042791 394 FEFDRLRSLLIYDR-SYSNGSLNGSILQELFSKLACLRALVISQFYISGSHHEANRIKEIPENVGKLIHLKYLNLSELGI 472 (761)
Q Consensus 394 ~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i 472 (761)
.+-+.|+.|+|+++ .+.... ...+.+.+..-..|+.|+|++|.+. +.+...+...+..-+.|+.|+|+.|.|
T Consensus 38 ~~n~~L~~L~L~~nn~igd~g--a~~la~aL~~N~~L~~L~L~~n~ig-----d~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKER--IRSLIEAACNSKHIEKFSLANTAIS-----DSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHH--HHHHHHHHTTCSCCCEEECTTSCCB-----HHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred hcCCCccEEECCCCCCCCHHH--HHHHHHHHhhCCCcCEEEccCCCCC-----hHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 34556666666653 331111 1123344555666777777766664 233334555555556677777777766
Q ss_pred c-----cCchhhhccCCCcEEecCCccC--cc-----cccccccccccccEeecCCc
Q 042791 473 E-----RLPETLCELYNLQKLDIRRCRN--LR-----ELPAGIGKLMNMRTLLNGET 517 (761)
Q Consensus 473 ~-----~lp~~~~~l~~L~~L~l~~~~~--~~-----~lp~~~~~l~~L~~L~l~~~ 517 (761)
. .+-..+..-..|++|+|++|.. ++ .+...+..-+.|+.|+++.+
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 5 2233344445567777665421 11 12222334455666665544
No 262
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.51 E-value=0.012 Score=59.57 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=37.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhc----cCCeeEEEEecCCCCHHHHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSNTFDQIRIAK 87 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~ 87 (761)
....++.|+|++|+||||+|.+++....... .-..++|++....++...+..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 3467999999999999999998886211111 235788999888766665543
No 263
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.43 E-value=0.0048 Score=62.08 Aligned_cols=57 Identities=25% Similarity=0.289 Sum_probs=38.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhc----cCCeeEEEEecCCCCHHHHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSNTFDQIRIAKAIIEGLG 94 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (761)
...++.|+|++|+||||+|.+++....... .-..++|++....++...+.. +++.++
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g 166 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALG 166 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhC
Confidence 356899999999999999998886211110 135689998888766666543 334443
No 264
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.42 E-value=0.0049 Score=57.15 Aligned_cols=42 Identities=31% Similarity=0.316 Sum_probs=33.7
Q ss_pred ccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 16 RVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 16 r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
|++.++.+.+.+.... .....+|+|.|+.|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5667777888776542 24568999999999999999999986
No 265
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.32 E-value=0.0065 Score=61.13 Aligned_cols=57 Identities=25% Similarity=0.315 Sum_probs=38.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhc---------cC-----CeeEEEEecCCCCHHHHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKR---------NF-----EKVIWVCVSNTFDQIRIAKAIIEGLG 94 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~---------~f-----~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (761)
...++.|+|++|+|||++|.+++....... .. ..++|++....++.+.+... ++.++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcC
Confidence 457999999999999999988885211111 11 46889988887666665533 34443
No 266
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.30 E-value=0.0067 Score=58.22 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=34.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhc----cCCeeEEEEecCCCCHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSNTFDQIRI 85 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~ 85 (761)
...++.|.|++|+||||+++.++....... .-..++|+..........+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 346899999999999999999886211111 2357889987765454443
No 267
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.14 E-value=0.018 Score=57.14 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=28.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCC-eeEEEEec
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVS 77 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~-~~~~v~~~ 77 (761)
..+++|.|++|+|||||++.++. .....-. .++|+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~--~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQAL--QWGTAMGKKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH--HHHHTSCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH--HHHHHcCCeEEEEeCc
Confidence 46899999999999999999987 3333322 46677643
No 268
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.01 E-value=0.006 Score=64.77 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+.++|.|++|+||||++.+++.
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHH
Confidence 3889999999999999999887
No 269
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.00 E-value=0.029 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...+++|.|+.|+|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999986
No 270
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.99 E-value=0.058 Score=55.78 Aligned_cols=38 Identities=29% Similarity=0.312 Sum_probs=29.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEe
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 76 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~ 76 (761)
.+++|.+.|++|+||||++.+++. .+...-..++.+.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~--~l~~~G~kVllv~~ 136 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR--YFQKRGYKVGVVCS 136 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEEC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH--HHHHCCCeEEEEeC
Confidence 478999999999999999999886 44444344555554
No 271
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.95 E-value=0.034 Score=55.53 Aligned_cols=72 Identities=15% Similarity=0.035 Sum_probs=46.5
Q ss_pred eecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHH
Q 042791 13 VCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEG 92 (761)
Q Consensus 13 ~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 92 (761)
..|..--...|-+.+... .....++|.|.+|+||||+|..++.. ....-..++|++.. .+...+...++..
T Consensus 26 ~~gi~TG~~~LD~~~gGl-----~~G~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 26 VTGIPTGFVQLDNYTSGF-----NKGSLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp CCSBCCSCHHHHHHHCSB-----CTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred cCcccCCChHHHHHhcCC-----CCCcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 344444455555555422 23468999999999999999998873 33333567777654 4666666666554
Q ss_pred h
Q 042791 93 L 93 (761)
Q Consensus 93 l 93 (761)
.
T Consensus 97 ~ 97 (338)
T 4a1f_A 97 L 97 (338)
T ss_dssp H
T ss_pred h
Confidence 3
No 272
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.95 E-value=0.0055 Score=55.62 Aligned_cols=96 Identities=18% Similarity=0.164 Sum_probs=69.4
Q ss_pred hhHHHHhccCCcceEEeeccc-cccCCccccccccccccchhcccccCccccCCcCCc-----cCchhhhccCCCcEEec
Q 042791 417 SILQELFSKLACLRALVISQF-YISGSHHEANRIKEIPENVGKLIHLKYLNLSELGIE-----RLPETLCELYNLQKLDI 490 (761)
Q Consensus 417 ~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~l~~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l 490 (761)
+.+..++.+-+.|+.|+|++| .+. +.+.+.+...+..-..|+.|+|++|.|. .+-..+..-+.|+.|+|
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~ig-----d~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L 105 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVS-----KERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV 105 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSC-----HHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCC-----HHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence 345556778899999999975 553 4455567777777788999999999987 34456667788999999
Q ss_pred CCccCccc----ccccccccccccEeecCCc
Q 042791 491 RRCRNLRE----LPAGIGKLMNMRTLLNGET 517 (761)
Q Consensus 491 ~~~~~~~~----lp~~~~~l~~L~~L~l~~~ 517 (761)
++|..... +...+..-+.|++|+|++|
T Consensus 106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 99885432 3333444556888888765
No 273
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.94 E-value=0.0042 Score=63.78 Aligned_cols=49 Identities=29% Similarity=0.291 Sum_probs=35.6
Q ss_pred ceecccchHHHHHHHHhcC-------C--ccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 12 EVCGRVDEKNELLSKLLCE-------S--SEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~~~-------~--~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.++|.+...+.+...+... . .......+.|.++|++|+|||++|+++++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3689999888888877210 0 00012346788999999999999999997
No 274
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.93 E-value=0.019 Score=56.51 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=47.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhc-cCCeeEEEEecCCC-CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKR-NFEKVIWVCVSNTF-DQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSI 114 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~-~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 114 (761)
+.+++++.|++|+||||++..++. .... .-..+.++...... ...+.+....+..+...........+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~--~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA--ISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h
Confidence 467999999999999999999987 4442 33356666654322 22222333333333221111223333333332 3
Q ss_pred CCceEEEEEeCC
Q 042791 115 KGKKNFLVLDDV 126 (761)
Q Consensus 115 ~~~~~LlvlDd~ 126 (761)
.+.=++|+|-.
T Consensus 181 -~~~dlvIiDT~ 191 (296)
T 2px0_A 181 -SEYDHVFVDTA 191 (296)
T ss_dssp -GGSSEEEEECC
T ss_pred -cCCCEEEEeCC
Confidence 33458889954
No 275
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.93 E-value=0.017 Score=55.19 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 276
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.93 E-value=0.003 Score=57.32 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+.|+|.|++|+||||+|+++++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999997
No 277
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.89 E-value=0.061 Score=53.62 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=37.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEG 92 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 92 (761)
....+.|.|.+|+||||+|..++.. ....-..++|++.. .+...+...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~--~a~~g~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH--HHTTTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEECC--CCHHHHHHHHHHH
Confidence 3568999999999999999988863 32223568888765 4666666666654
No 278
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.86 E-value=0.018 Score=56.83 Aligned_cols=88 Identities=19% Similarity=0.233 Sum_probs=48.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHH--HHHHHHHHHhcCCC---CCCCcHHH-HHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQI--RIAKAIIEGLGESA---SGLNEFQS-LMSR 109 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~--~~~~~i~~~l~~~~---~~~~~~~~-~~~~ 109 (761)
..++++.|.|++|+||||++..++. .....-..+.++.... +... +-+...++..+... ....+... ..+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~--~l~~~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAK--MFVDEGKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHH--HHHhcCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 3568999999999999999999997 4444434466665433 3222 11223344433211 01112222 2233
Q ss_pred HHHHhCCceEEEEEeCC
Q 042791 110 IQSSIKGKKNFLVLDDV 126 (761)
Q Consensus 110 ~~~~l~~~~~LlvlDd~ 126 (761)
+...+..+.-++|+|..
T Consensus 179 l~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 179 VAHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHHTTCSEEEEEEC
T ss_pred HHHHHhcCCCEEEEECC
Confidence 44444444458888976
No 279
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.79 E-value=0.026 Score=55.97 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=31.4
Q ss_pred cccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 15 GRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 15 gr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
|-...+..+...+..... ...+.+|+|.|+.|+||||+++.+..
T Consensus 71 ~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 444445555555544322 45678999999999999999999886
No 280
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.74 E-value=0.0026 Score=57.56 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
|.|+|+||+|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999986
No 281
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.68 E-value=0.048 Score=53.39 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=33.7
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc---CCeeEEEEecCCCCHHHHHHHH
Q 042791 35 QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN---FEKVIWVCVSNTFDQIRIAKAI 89 (761)
Q Consensus 35 ~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~---f~~~~~v~~~~~~~~~~~~~~i 89 (761)
...+.+|+|.|+.|+||||+|+.+.. ..... ...+..|......-.......+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~--~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l 83 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN--HLMEKYGGEKSIGYASIDDFYLTHEDQLKL 83 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH--HHHHHHGGGSCEEEEEGGGGBCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH--HhhhcCCCCceEEEeccccccCChHHHHHH
Confidence 34578999999999999999999987 33321 2334444544433333344444
No 282
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.67 E-value=0.012 Score=53.63 Aligned_cols=24 Identities=42% Similarity=0.421 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
....|+|.|++|+||||+++.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999997
No 283
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.65 E-value=0.0068 Score=55.64 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...+++|.|++|+||||+++.++.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999999997
No 284
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.65 E-value=0.0056 Score=55.57 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+..|+|.|++|+||||+|++++.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 36799999999999999999986
No 285
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.60 E-value=0.034 Score=56.16 Aligned_cols=112 Identities=11% Similarity=0.155 Sum_probs=59.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGK 117 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 117 (761)
...++|.|+.|+||||+.+.+.. .+.......++ .+.+..... .......+... ..........+.+...+...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~-t~ed~~e~~--~~~~~~~v~q~-~~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHIL-TIEDPIEFV--HESKKCLVNQR-EVHRDTLGFSEALRSALRED 196 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEE-EEESSCCSC--CCCSSSEEEEE-EBTTTBSCHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEE-EccCcHHhh--hhccccceeee-eeccccCCHHHHHHHHhhhC
Confidence 35899999999999999999987 44433223322 222211100 00000000000 00001122344788888888
Q ss_pred eEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchhhh
Q 042791 118 KNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVA 160 (761)
Q Consensus 118 ~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~ 160 (761)
+=+|++|+.. +.+.+..+.... ..|.-||+|+......
T Consensus 197 PdvillDEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 197 PDIILVGEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred cCEEecCCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 8899999994 233333333332 2355688888765443
No 286
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.59 E-value=0.012 Score=54.36 Aligned_cols=24 Identities=42% Similarity=0.397 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...+|+|.|++|+||||+++.++.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999997
No 287
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.57 E-value=0.011 Score=58.13 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=23.1
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 35 QNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 35 ~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...+..++|.|++|+||||+|++++.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999999986
No 288
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.53 E-value=0.046 Score=56.54 Aligned_cols=39 Identities=36% Similarity=0.200 Sum_probs=30.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEec
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 77 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (761)
.++++.+.|++|+||||++..++. .+...-..+..+.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~--~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY--FYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH--HHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEecC
Confidence 478999999999999999999987 454444456666554
No 289
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.53 E-value=0.007 Score=60.55 Aligned_cols=41 Identities=20% Similarity=0.113 Sum_probs=28.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccC-C-eeEEEEecCC
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF-E-KVIWVCVSNT 79 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f-~-~~~~v~~~~~ 79 (761)
+.+.+.|+|++|+|||||++.+++ .+.... + .++++-++..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~~I~~lIGER 215 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCVLMVLLIDER 215 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSEEEEEEESSC
T ss_pred CCcEEEEecCCCCChhHHHHHHHH--HHhhcCCCeeEEEEEecCC
Confidence 346889999999999999999887 333322 2 2456666653
No 290
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.51 E-value=0.017 Score=56.87 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|+|+.|+|||||++.++.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999986
No 291
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.50 E-value=0.02 Score=52.46 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=54.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCC--CCcHHHHHHHHHHHh
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASG--LNEFQSLMSRIQSSI 114 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l 114 (761)
..++.+++|+.|.||||.+...+. +....-..++.+...... ..-...+.+.++..... ..... .+.+..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~--r~~~~g~kVli~k~~~d~--R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVR--RTQFAKQHAIVFKPCIDN--RYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEEEEeccCC--cchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 357888999999999999977776 444433344444422211 11112344444322111 11111 122222
Q ss_pred CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchhh
Q 042791 115 KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESV 159 (761)
Q Consensus 115 ~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~ 159 (761)
.++--+|++|++.-.+.+.++.+ ..+.+ .+..||+|.++.+.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGLDQDF 140 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEECSBCT
T ss_pred hcCCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEeccccc
Confidence 33334999999966544444333 33222 26679999996543
No 292
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.46 E-value=0.018 Score=62.54 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+.++|.|++|+||||++.++..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5889999999999999999987
No 293
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.43 E-value=0.013 Score=53.74 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+.|+|.|++|+||||+|+.+++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999997
No 294
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.42 E-value=0.053 Score=54.09 Aligned_cols=39 Identities=31% Similarity=0.252 Sum_probs=28.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEe
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 76 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~ 76 (761)
.++.+++|.|+.|+||||+++.++. .....-..+.++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag--~l~~~~g~V~l~g~ 165 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN--WLKNHGFSVVIAAS 165 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCEEEEEee
Confidence 4578999999999999999999997 44433233444443
No 295
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.42 E-value=0.0068 Score=56.05 Aligned_cols=23 Identities=39% Similarity=0.418 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+.|+|.|++|+||||+++.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999997
No 296
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.41 E-value=0.0067 Score=54.56 Aligned_cols=21 Identities=29% Similarity=0.145 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.|+|.|++|+||||+|+.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 297
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.40 E-value=0.0081 Score=54.47 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.++++|.|++|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 298
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.40 E-value=0.011 Score=55.05 Aligned_cols=38 Identities=32% Similarity=0.356 Sum_probs=28.1
Q ss_pred hHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 19 EKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 19 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
-++++.+.+... .....+|+|.|+.|+|||||++.++.
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555555432 13467999999999999999999987
No 299
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.38 E-value=0.028 Score=58.24 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=33.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccC-CeeEEEEecCCCC-HHHHHHHHH
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSNTFD-QIRIAKAII 90 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f-~~~~~v~~~~~~~-~~~~~~~i~ 90 (761)
+.++|+|++|+|||||++.++. .....+ ..++++.++...+ ..+++..+.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~--~~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIH--NIAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHH--HHHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHh--hhhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 4688999999999999999987 333333 4456666666543 334554443
No 300
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.36 E-value=0.01 Score=53.81 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 20 KNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 20 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+..+..++.. -++...++++|++|+||||+|.++++
T Consensus 45 ~~~l~~~~~~-----iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKG-----TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHT-----CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 4455555542 12234689999999999999999987
No 301
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.35 E-value=0.0067 Score=55.34 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+.|+|.|++|+||||+|++++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999997
No 302
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.35 E-value=0.0096 Score=54.70 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+..|+|.|++|+||||+|+.++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 303
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.30 E-value=0.0082 Score=54.22 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCcHHHHHHHH
Q 042791 39 QVISLVGLGGIGKTTLAQLA 58 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~ 58 (761)
.+|+|.|++|+||||+|+++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 304
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.30 E-value=0.035 Score=56.15 Aligned_cols=48 Identities=29% Similarity=0.333 Sum_probs=32.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccC----CeeEEEEecCCCCHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF----EKVIWVCVSNTFDQIR 84 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f----~~~~~v~~~~~~~~~~ 84 (761)
...++.|+|++|+|||||++.++......... ..++|++....+....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 45799999999999999999988621101111 3458998766544333
No 305
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.27 E-value=0.038 Score=56.77 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=36.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhh----hccCCeeEEEEecCCCCHHHHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEV----KRNFEKVIWVCVSNTFDQIRIAKAIIEGLG 94 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~----~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (761)
...++.|.|++|+|||||++.++-.... ...-..++|+.....+....+. .+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 3568999999999999999976521011 1123568899877655555433 3445444
No 306
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.26 E-value=0.0098 Score=55.38 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.++++|.|+.|+||||+++.++.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 56899999999999999999986
No 307
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.24 E-value=0.018 Score=70.33 Aligned_cols=84 Identities=19% Similarity=0.241 Sum_probs=55.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCcHHHHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESA-----SGLNEFQSLMSRIQ 111 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~~ 111 (761)
+.+.|.|+|++|+|||+||.+++. .....-..+.|+.+........ ++.++... .+....++..+.+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 467899999999999999999987 4444555688888777655554 33444211 12233445555555
Q ss_pred HHhC-CceEEEEEeCCC
Q 042791 112 SSIK-GKKNFLVLDDVW 127 (761)
Q Consensus 112 ~~l~-~~~~LlvlDd~~ 127 (761)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 4443 456699999984
No 308
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.23 E-value=0.038 Score=55.63 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 46899999999999999999986
No 309
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.23 E-value=0.021 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
-+.+|.|.+|.|||++|.....
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4778999999999999977543
No 310
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.19 E-value=0.022 Score=56.57 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=32.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
+..|+|.|+|-|||||||.+-.++. .+...-..|.-+++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecCC
Confidence 4579999999999999999987776 5555556688888764
No 311
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.17 E-value=0.061 Score=57.76 Aligned_cols=53 Identities=17% Similarity=0.060 Sum_probs=37.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-CCeeEEEEecCCCCHHHHHHHHHHHh
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSNTFDQIRIAKAIIEGL 93 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~~~i~~~l 93 (761)
....+.|.|++|+||||+|.+++. ..... -..++|++... +...+...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~--~~a~~~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQAL--QWGTAMGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHH--HHTTTSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHH--HHHHhcCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 356889999999999999999887 33333 34678887654 5666766665443
No 312
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.16 E-value=0.014 Score=58.16 Aligned_cols=44 Identities=25% Similarity=0.239 Sum_probs=30.0
Q ss_pred cccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 15 GRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 15 gr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+.+.-.+++.+.+...-. .+....++|+|++|+||||+++.++.
T Consensus 3 ~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 344445555555532221 23456788999999999999999997
No 313
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.08 E-value=0.012 Score=54.59 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=23.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 35 QNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 35 ~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
-.++++|+|.|+||+||+|.|+.+++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35679999999999999999999997
No 314
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.08 E-value=0.0091 Score=53.70 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..|+|.|++|+||||+++.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 315
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.07 E-value=0.098 Score=55.21 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=35.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhc-cCCeeEEEEecCCCCHHHHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKR-NFEKVIWVCVSNTFDQIRIAKAII 90 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~-~f~~~~~v~~~~~~~~~~~~~~i~ 90 (761)
....+.|.|++|+||||+|..++. .... .-..++|+.... +...+...+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~--~~~~~~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQ--NVATKTNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHH--HHHHHSSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH--HHHHhCCCcEEEEECCC--CHHHHHHHHH
Confidence 346899999999999999999987 3332 223577876544 4555555553
No 316
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.06 E-value=0.0087 Score=55.58 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..++++|.|++|+||||+++.++.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 317
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.04 E-value=0.026 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...|+|.|++|+||||+|+.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999997
No 318
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.03 E-value=0.012 Score=53.64 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...|+|.|++|+||||+++.++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 319
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.02 E-value=0.012 Score=54.39 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...+++|.|++|+||||+++.++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 320
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.02 E-value=0.0095 Score=54.34 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
++++|.|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999996
No 321
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.02 E-value=0.01 Score=53.94 Aligned_cols=110 Identities=13% Similarity=0.063 Sum_probs=54.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCC--CCCcHHHHHHHHHHHhC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESAS--GLNEFQSLMSRIQSSIK 115 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~~l~ 115 (761)
.++.+++|+.|.||||.+..++. +....-..++.+.-.... ..-...+.+.++.... ...+.. .+.+.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~--r~~~~g~kV~v~k~~~d~--r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIR--RAKIAKQKIQVFKPEIDN--RYSKEDVVSHMGEKEQAVAIKNSR----EILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEEC---------CEEECTTSCEEECEEESSST----HHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEEEEeccCc--cchHHHHHhhcCCceeeEeeCCHH----HHHHHHh
Confidence 57999999999999999988777 343333334433322111 0001122222221100 001111 2333333
Q ss_pred CceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchh
Q 042791 116 GKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNES 158 (761)
Q Consensus 116 ~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~ 158 (761)
++--+|++|++...+.+.++.+....+ .+..||+|.++.+
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDMD 119 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEecccc
Confidence 333499999986543334443333222 2667999988643
No 322
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.01 E-value=0.069 Score=53.12 Aligned_cols=40 Identities=33% Similarity=0.307 Sum_probs=30.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEec
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 77 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (761)
..++++.|.|++|+||||++..++. .....-..+.++...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~--~l~~~g~kVllid~D 142 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN--YYAELGYKVLIAAAD 142 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCC
Confidence 4578999999999999999999987 444443446665543
No 323
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.01 E-value=0.011 Score=54.31 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..|+|.|++|+||||+++.++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999997
No 324
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.01 E-value=0.014 Score=53.16 Aligned_cols=24 Identities=21% Similarity=0.589 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+.++|.|+.|+|||||++++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999986
No 325
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.00 E-value=0.016 Score=52.14 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...+++|.|++|+||||+++.++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 326
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.98 E-value=0.08 Score=55.71 Aligned_cols=53 Identities=11% Similarity=0.002 Sum_probs=37.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhc-cCCeeEEEEecCCCCHHHHHHHHHHHh
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKR-NFEKVIWVCVSNTFDQIRIAKAIIEGL 93 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~-~f~~~~~v~~~~~~~~~~~~~~i~~~l 93 (761)
....+.|.|++|+||||+|..++.. ... .-..++|++.. .+...+...+....
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 3468999999999999999998873 332 23457787665 35666666665443
No 327
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.98 E-value=0.0096 Score=53.97 Aligned_cols=23 Identities=43% Similarity=0.528 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+.|+|.|++|+||||+++.+++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46789999999999999999986
No 328
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.98 E-value=0.01 Score=55.05 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.++|+|.|++|+||||+|+.++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 329
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.95 E-value=0.22 Score=52.69 Aligned_cols=40 Identities=33% Similarity=0.350 Sum_probs=28.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEec
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 77 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (761)
.++++|.|+|.+|+||||++.+++. .....-..+..|+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~--~l~~~G~kVllVd~D 138 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY--YYQRKGWKTCLICAD 138 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEecc
Confidence 3578999999999999999999986 444433346666553
No 330
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.94 E-value=0.016 Score=55.92 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.2
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 35 QNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 35 ~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...+..++|.|++|+||||+|+.++.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44578999999999999999999986
No 331
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.93 E-value=0.013 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+..|+|.|++|+||||+|+.++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 332
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.92 E-value=0.02 Score=53.54 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=23.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhcc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRN 67 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~ 67 (761)
+..|+|.|++|+||||+|+.+++ .+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~--~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE--ALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH--HHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHc
Confidence 46899999999999999999997 45433
No 333
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.90 E-value=0.023 Score=50.17 Aligned_cols=36 Identities=31% Similarity=0.175 Sum_probs=26.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEE
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 75 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~ 75 (761)
.+++.|.|..|+||||++.+++. .+......+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~--~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA--AAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--hhHhcCCeeeEEE
Confidence 46899999999999999999997 4544322333333
No 334
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.89 E-value=0.012 Score=52.73 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
-+.|+|.|++|+||||+++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999997
No 335
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.88 E-value=0.018 Score=55.04 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=28.7
Q ss_pred ccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 16 RVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 16 r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+.+.++.+..... ...+..|+|.|++|+||||+|+.+++
T Consensus 11 ~~~~~~~~~~~~~~~----~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 11 TIDLLNELKRRYACL----SKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHHHH----TSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhc----cCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 334444444443322 23467899999999999999999986
No 336
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.87 E-value=0.11 Score=54.37 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=35.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEG 92 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 92 (761)
....+.|.|.+|+||||+|.+++.. ....-..++|++... +...+...+...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~--~a~~g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHH--HHHTTCEEEEECSSS--CTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHH--HHHcCCEEEEEECCC--CHHHHHHHHHHH
Confidence 3468999999999999999998873 333334677776554 444455554443
No 337
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.87 E-value=0.015 Score=54.04 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.++.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 45899999999999999999986
No 338
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.82 E-value=0.014 Score=52.37 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997553
No 339
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.81 E-value=0.0099 Score=53.60 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.|+|.|++|+||||+|+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999997
No 340
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.80 E-value=0.16 Score=64.64 Aligned_cols=139 Identities=12% Similarity=0.045 Sum_probs=76.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCce
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKK 118 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (761)
+.|.++|++|+|||++|+.+... . ..+ .+..++++...+...+.+.+...+..........- .-.-.+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~--~-~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~------~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN--S-SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTL------LPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS--C-SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEE------EEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhc--C-CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccc------cCCCCCce
Confidence 57889999999999999766652 1 222 35567777777777776666555432110000000 00003578
Q ss_pred EEEEEeCCCCCCcc------CchhHHHhhcCCC-----C-------CcEEEEEecchh------hhhh-cCCCCeeecCC
Q 042791 119 NFLVLDDVWDGDYN------KWQPFFRCLKNGL-----H-------GSKILVTTRNES------VARM-MGSTDSISIKQ 173 (761)
Q Consensus 119 ~LlvlDd~~~~~~~------~~~~l~~~~~~~~-----~-------~~~iiiTtr~~~------~~~~-~~~~~~~~l~~ 173 (761)
.++++||++-...+ ..+.+...+..++ . +..+|.++.... +-+. ......+.+..
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 89999997543222 2333443333211 1 123444443321 1111 11235788999
Q ss_pred CChHHHHHHHHHHh
Q 042791 174 LAEEECWSLFKQLA 187 (761)
Q Consensus 174 l~~~ea~~l~~~~~ 187 (761)
.++++..++|....
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999998887664
No 341
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.79 E-value=0.016 Score=53.68 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+..|+|.|++|+||||+|+.++.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999987
No 342
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.78 E-value=0.014 Score=53.68 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...|+|.|++|+||||+|+.+++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 343
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.78 E-value=0.017 Score=53.52 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+...|+|.|++|+||||+|+.+++
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999986
No 344
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.77 E-value=0.016 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|++|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 345
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.77 E-value=0.11 Score=51.00 Aligned_cols=87 Identities=23% Similarity=0.190 Sum_probs=48.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCH-HHHHHHHHHHhcCCC---CCCCcHHHHHHHHHHH
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQ-IRIAKAIIEGLGESA---SGLNEFQSLMSRIQSS 113 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~-~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~~~ 113 (761)
++++.+.|++|+||||++..++. .....-..+.++........ ...+.......+... ....+..+......+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~--~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY--FYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH--HHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 67999999999999999999987 44444445666665443322 222333344433211 1112333333323333
Q ss_pred hC-CceEEEEEeCC
Q 042791 114 IK-GKKNFLVLDDV 126 (761)
Q Consensus 114 l~-~~~~LlvlDd~ 126 (761)
++ ..-=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 32 23337888976
No 346
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.76 E-value=0.011 Score=61.09 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=35.1
Q ss_pred CceecccchHHHHHHHHhcC-------Ccc-CCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 11 GEVCGRVDEKNELLSKLLCE-------SSE-QQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~-------~~~-~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..++|.++..+.+...+... ..- ....++.+.++|++|+||||+|++++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35788888888887665321 000 011245688999999999999999997
No 347
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.74 E-value=0.018 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...|+|.|++|+||||+++.+++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999986
No 348
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.71 E-value=0.016 Score=52.22 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.++|.|+.|+|||||++.++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 349
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.71 E-value=0.02 Score=53.30 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
....+|+|.|++|+||||+|+.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999987
No 350
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.70 E-value=0.085 Score=51.87 Aligned_cols=39 Identities=31% Similarity=0.230 Sum_probs=29.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEec
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 77 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (761)
..++++|.|++|+||||++..++. .....-..+.++...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~--~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEecCC
Confidence 467999999999999999999997 444433445555543
No 351
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.70 E-value=0.053 Score=52.01 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=33.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAI 89 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 89 (761)
...++.|.|.+|+|||++|.+++.. .....-..++|++... +...+...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~-~~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK-GAEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH-HHHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCceeecccC--CHHHHHHHH
Confidence 3568999999999999999887752 2233345577776554 455554443
No 352
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.69 E-value=0.044 Score=50.30 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.|+|.|++|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999997
No 353
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.68 E-value=0.1 Score=53.76 Aligned_cols=38 Identities=32% Similarity=0.232 Sum_probs=28.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEe
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 76 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~ 76 (761)
.++++.+.|++|+||||++..++. .....-..+..+.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~--~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEeec
Confidence 467899999999999999999997 44444344555554
No 354
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.68 E-value=0.017 Score=55.58 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
++++|.|++|+||||+|++++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4689999999999999999986
No 355
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.68 E-value=0.018 Score=52.63 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+++|.|++|+||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999984
No 356
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.67 E-value=0.019 Score=63.17 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=36.0
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+.++|.+..++.+...+... +.++|+|++|+||||+|+.++.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhc
Confidence 45899998888888888643 4789999999999999999997
No 357
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.66 E-value=0.013 Score=53.96 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+.++|.|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999986
No 358
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=94.64 E-value=0.045 Score=56.34 Aligned_cols=134 Identities=17% Similarity=0.157 Sum_probs=71.0
Q ss_pred CceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHH
Q 042791 11 GEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAII 90 (761)
Q Consensus 11 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 90 (761)
..++|....++++.+.+..... . ...|.|.|.+|+|||++|+++.. ...+.....+-++++.. ....+...+.
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~---~-~~~vli~Ge~GtGK~~lAr~ih~--~s~r~~~~fv~v~~~~~-~~~~~~~elf 209 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISC---A-ECPVLITGESGVGKEVVARLIHK--LSDRSKEPFVALNVASI-PRDIFEAELF 209 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTT---C-CSCEEEECSTTSSHHHHHHHHHH--HSTTTTSCEEEEETTTS-CHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcC---C-CCCeEEecCCCcCHHHHHHHHHH--hcCCCCCCeEEEecCCC-CHHHHHHHhc
Confidence 4578888888888777665432 2 23468999999999999999986 22222233344555542 2222222222
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCC-----------CCcEEEEEecc
Q 042791 91 EGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTRN 156 (761)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~~~~iiiTtr~ 156 (761)
..-.+........ ....+.. . ..-.+++|+++.-....+..++..+.... ...|||.||..
T Consensus 210 g~~~g~~tga~~~--~~g~~~~-a--~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 210 GYEKGAFTGAVSS--KEGFFEL-A--DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp CBCTTSSTTCCSC--BCCHHHH-T--TTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred CCCCCCCCCcccc--cCCceee-C--CCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 1111111110000 0000111 1 12367899998766666677776654321 13467776653
No 359
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.62 E-value=0.019 Score=53.23 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.++.+|+|.|+.|+||||+++.++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999996
No 360
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.62 E-value=0.017 Score=55.84 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...|+|.|++|+||||+|+.++.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999997
No 361
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.59 E-value=0.13 Score=56.10 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...++|.|+.|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 362
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.59 E-value=0.015 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+..|+|.|++|+||||+|+.+++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999997
No 363
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.58 E-value=0.04 Score=54.85 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=32.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC
Q 042791 35 QNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT 79 (761)
Q Consensus 35 ~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (761)
....++|.|+|.||+||||+|..++. .+...-..|+.+++...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~--~La~~G~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHH--HHHHCCCeEEEEeCCCC
Confidence 34568888899999999999998887 55555556888887643
No 364
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.58 E-value=0.02 Score=53.40 Aligned_cols=24 Identities=42% Similarity=0.336 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...+++|.|+.|+|||||++.++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 365
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.49 E-value=0.078 Score=55.41 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=30.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCC
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFD 81 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~ 81 (761)
....+++|.|+.|+||||+++.++. ..... .+.+++...+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg--ll~~~-~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR--QFEQQ-GKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH--HHHHT-TCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH--Hhhhc-CCeEEEecCcccc
Confidence 3467999999999999999999997 44332 3445554444443
No 366
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.49 E-value=0.013 Score=53.25 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
+|+|.|++|+||||+|++++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 367
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.48 E-value=0.023 Score=52.07 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+.|+|.|++|+||||+|+.++.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 368
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.48 E-value=0.078 Score=55.14 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+.+|+|.|++|+||||+|++++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999987
No 369
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.47 E-value=0.02 Score=53.50 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...+++|.|+.|+|||||++.++.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999986
No 370
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.47 E-value=0.031 Score=52.08 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+..|+|.|++|+||||+++.+++
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999997
No 371
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.47 E-value=0.012 Score=53.50 Aligned_cols=23 Identities=30% Similarity=0.311 Sum_probs=17.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...|+|.|++|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 372
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.45 E-value=0.13 Score=53.48 Aligned_cols=41 Identities=27% Similarity=0.270 Sum_probs=31.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc-CCeeEEEEecC
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSN 78 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~-f~~~~~v~~~~ 78 (761)
..+++|.++|.+|+||||++..++. ..... -..+..+++..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~--~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK--FLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH--HHHHTSCCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHHhcCCeEEEEecCC
Confidence 3578999999999999999999987 55544 44566666654
No 373
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.42 E-value=0.033 Score=54.98 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+..+++|.|+.|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999999996
No 374
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.39 E-value=0.021 Score=54.83 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+..++|.|++|+||||+++.+++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999995
No 375
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.37 E-value=0.025 Score=51.11 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
....|+|.|+.|+||||+++.++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 376
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.37 E-value=0.062 Score=50.77 Aligned_cols=46 Identities=28% Similarity=0.323 Sum_probs=31.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhh---hc-cCCeeEEEEecCCCCH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEV---KR-NFEKVIWVCVSNTFDQ 82 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~---~~-~f~~~~~v~~~~~~~~ 82 (761)
...+++|.|++|+|||||++.++..... .. ....++|+........
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 3579999999999999999999751011 01 2345788876554333
No 377
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.35 E-value=0.058 Score=55.05 Aligned_cols=162 Identities=16% Similarity=0.150 Sum_probs=82.6
Q ss_pred CCceecccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHH
Q 042791 10 EGEVCGRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAI 89 (761)
Q Consensus 10 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 89 (761)
...++|....+.++.+.+..... ....|.|+|++|+||+++|+.+.. ...+. ...+-+++..... ..+...+
T Consensus 128 ~~~~ig~s~~~~~~~~~~~~~a~----~~~~vli~GesGtGKe~lAr~ih~--~s~r~-~~fv~vnc~~~~~-~~~~~~l 199 (368)
T 3dzd_A 128 EIEFVGEHPKILEIKRLIPKIAK----SKAPVLITGESGTGKEIVARLIHR--YSGRK-GAFVDLNCASIPQ-ELAESEL 199 (368)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHT----SCSCEEEECCTTSSHHHHHHHHHH--HHCCC-SCEEEEESSSSCT-TTHHHHH
T ss_pred cccccccchHHHHHHhhhhhhhc----cchhheEEeCCCchHHHHHHHHHH--hcccc-CCcEEEEcccCCh-HHHHHHh
Confidence 34678887777776666544321 123477999999999999999986 22222 2233444443221 1111122
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCC-----------CCcEEEEEecch-
Q 042791 90 IEGLGESASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTRNE- 157 (761)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~~~~iiiTtr~~- 157 (761)
...-.+........ ....+.. .. . -.+++|++++-....+..++..+.... ...|+|.+|...
T Consensus 200 fg~~~g~~tga~~~--~~g~~~~-a~-~-gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l 274 (368)
T 3dzd_A 200 FGHEKGAFTGALTR--KKGKLEL-AD-Q-GTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNL 274 (368)
T ss_dssp HEECSCSSSSCCCC--EECHHHH-TT-T-SEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCH
T ss_pred cCccccccCCcccc--cCChHhh-cC-C-CeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCH
Confidence 11111111110000 0000111 11 2 258999998877777777777765321 124677666532
Q ss_pred h--hhh---------hcCCCCeeecCCCCh--HHHHHHHHH
Q 042791 158 S--VAR---------MMGSTDSISIKQLAE--EECWSLFKQ 185 (761)
Q Consensus 158 ~--~~~---------~~~~~~~~~l~~l~~--~ea~~l~~~ 185 (761)
. +.. .+ ....+.++||.+ ++...|+..
T Consensus 275 ~~~v~~g~fr~dL~~rl-~~~~i~lPpLreR~~Di~~l~~~ 314 (368)
T 3dzd_A 275 EEEIKKGNFREDLYYRL-SVFQIYLPPLRERGKDVILLAEY 314 (368)
T ss_dssp HHHHHTTSSCHHHHHHH-TSEEEECCCGGGSTTHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHh-CCeEEeCCChhhchhhHHHHHHH
Confidence 1 111 11 123577889877 565554433
No 378
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.34 E-value=0.028 Score=49.34 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.++.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999996
No 379
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.34 E-value=0.022 Score=54.82 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+.+|+|.|++|+||||+|+.++.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999986
No 380
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.34 E-value=0.016 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+.|+|.|++|+||||+|+.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999997
No 381
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.32 E-value=0.064 Score=49.08 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.|+|.|++|+||||+|+.+++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999997
No 382
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.30 E-value=0.019 Score=53.81 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.++.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999986
No 383
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.29 E-value=0.025 Score=52.50 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 384
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.28 E-value=0.023 Score=52.74 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.++.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 385
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.28 E-value=0.081 Score=48.91 Aligned_cols=39 Identities=23% Similarity=0.105 Sum_probs=27.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT 79 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (761)
-.|++.|.||+||||+|..++. .....-..+.++.+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~--~l~~~G~~V~v~d~D~q 45 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAH--AQLRQGVRVMAGVVETH 45 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCCT
T ss_pred EEEEEECCCCCcHHHHHHHHHH--HHHHCCCCEEEEEeCCC
Confidence 4578999999999999988887 44433334555555443
No 386
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.24 E-value=0.02 Score=53.02 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.|+|.|++|+||||+++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 588999999999999999997
No 387
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.23 E-value=0.022 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...|+|.|++|+||||+|+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 388
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.22 E-value=0.02 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...|+|.|++|+||||+|+.++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999986
No 389
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.19 E-value=0.028 Score=55.75 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
....+|+|.|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3468999999999999999999986
No 390
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.15 E-value=0.024 Score=50.62 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.|+|.|++|+||||+|+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999997
No 391
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.14 E-value=0.024 Score=52.57 Aligned_cols=21 Identities=43% Similarity=0.498 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.|+|.|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999985
No 392
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.11 E-value=0.02 Score=53.86 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...|+|.|++|+||||+++.+++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999997
No 393
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.11 E-value=0.039 Score=52.84 Aligned_cols=39 Identities=28% Similarity=0.240 Sum_probs=29.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
..++.|.|++|+||||+|.+++. .....-..++|+....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~--~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW--NGLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEccC
Confidence 46899999999999999988876 3333345688887554
No 394
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.10 E-value=0.024 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...|+|.|++|+||||+++.+++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999997
No 395
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.07 E-value=0.14 Score=53.27 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=54.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhh-ccCCeeEEEEecCCC-CHHHHHHHHHHHhcCC--------------CCCC
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIWVCVSNTF-DQIRIAKAIIEGLGES--------------ASGL 100 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~-~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~--------------~~~~ 100 (761)
+.+.++|.|.+|+|||+|+.++++ .+. .+-+.++|+-++... ...++.+.+...-... ..+.
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~--~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~ 241 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 241 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHH--HTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTS
T ss_pred cCCeEEeecCCCCCchHHHHHHHH--HHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCC
Confidence 346789999999999999988886 332 233677888777654 3456666665432111 0111
Q ss_pred Cc-----HHHHHHHHHHHhC---CceEEEEEeCC
Q 042791 101 NE-----FQSLMSRIQSSIK---GKKNFLVLDDV 126 (761)
Q Consensus 101 ~~-----~~~~~~~~~~~l~---~~~~LlvlDd~ 126 (761)
.. .....-.+.++++ ++.+|+++|++
T Consensus 242 p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 242 PPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 11 1122233445554 57999999998
No 396
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.07 E-value=0.26 Score=51.03 Aligned_cols=64 Identities=22% Similarity=0.212 Sum_probs=41.7
Q ss_pred HHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhh-ccCCeeEEEEecCCC-CHHHHHHHHHHH
Q 042791 22 ELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIWVCVSNTF-DQIRIAKAIIEG 92 (761)
Q Consensus 22 ~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~-~~f~~~~~v~~~~~~-~~~~~~~~i~~~ 92 (761)
+.++.|..-. +.+.++|.|.+|+|||+|+.++++ ... .+-+.++|+-++... ...++.+.+...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~--~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHH--HTTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHH--hhHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 3445554432 346789999999999999998886 332 223567777776644 344566666543
No 397
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.06 E-value=0.032 Score=53.47 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...+|+|.|+.|+||||+++.++.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 398
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.05 E-value=0.071 Score=65.35 Aligned_cols=85 Identities=18% Similarity=0.231 Sum_probs=56.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESAS-----GLNEFQSLMSRIQ 111 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~ 111 (761)
...++.|+|++|+||||||.+++. .....-..++|++.....+... ++.++.... +....+++.+.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~--~~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 457999999999999999999987 4444445788998877665431 445543221 2345566655555
Q ss_pred HHhC-CceEEEEEeCCCC
Q 042791 112 SSIK-GKKNFLVLDDVWD 128 (761)
Q Consensus 112 ~~l~-~~~~LlvlDd~~~ 128 (761)
...+ ...-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 4332 3455999998843
No 399
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.03 E-value=0.026 Score=53.33 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+|+|.|++|+||||+++.++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 400
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.98 E-value=0.086 Score=53.56 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=27.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEe
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 76 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~ 76 (761)
.+..+|+|.|.+|+||||++.+++. .....-..+..+.+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~--~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM--HLIERGHRVAVLAV 115 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH--HHHhCCCceEEEec
Confidence 4568999999999999999999886 33333333444443
No 401
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.97 E-value=0.04 Score=51.98 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
....|+|.|.+|+|||||+.+++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 357788999999999999999886
No 402
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.97 E-value=0.1 Score=47.81 Aligned_cols=48 Identities=25% Similarity=0.268 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHH
Q 042791 40 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAI 89 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 89 (761)
.|+|-|..|+||||.++.+++ .+......+++..-..........+.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~ 49 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKI 49 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHH
Confidence 367899999999999999998 565554445555433333333333333
No 403
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.96 E-value=0.15 Score=50.94 Aligned_cols=51 Identities=20% Similarity=0.128 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccC-C-eeEEEEecC
Q 042791 21 NELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF-E-KVIWVCVSN 78 (761)
Q Consensus 21 ~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f-~-~~~~v~~~~ 78 (761)
-++++.+..-. +.+.++|.|++|+|||+|+.++++ ...... + .++|+-++.
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~--~i~~~~~dv~~V~~lIGE 215 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIAN--GIAENHPDTIRIILLIDE 215 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHH--HHHHHCTTSEEEEEECSC
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHH--HHhhcCCCeEEEEEEecc
Confidence 35556665432 346788999999999999999887 333222 2 235665554
No 404
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.91 E-value=0.059 Score=53.54 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
....+|+|.|+.|+||||+++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999986
No 405
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.91 E-value=0.033 Score=54.47 Aligned_cols=25 Identities=44% Similarity=0.707 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.++.+|+|.|++|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999983
No 406
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.89 E-value=0.027 Score=52.70 Aligned_cols=21 Identities=43% Similarity=0.520 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 407
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.89 E-value=0.057 Score=45.51 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=25.1
Q ss_pred ccccchhcccccCccccCCcCCccCchh-hhccCCCcEEecCCcc
Q 042791 451 EIPENVGKLIHLKYLNLSELGIERLPET-LCELYNLQKLDIRRCR 494 (761)
Q Consensus 451 ~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~ 494 (761)
.+|..+ ..+|++|+|++|.|+.+|.. |..+++|++|+|++|.
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 555432 23566777777777666643 4556666666666654
No 408
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.86 E-value=0.033 Score=51.90 Aligned_cols=23 Identities=39% Similarity=0.314 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...|+|.|++|+||||+++.++.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999997
No 409
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.85 E-value=0.18 Score=47.78 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=52.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcC---C--------CC---C--CCcHH
Q 042791 41 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGE---S--------AS---G--LNEFQ 104 (761)
Q Consensus 41 v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~---~--------~~---~--~~~~~ 104 (761)
++|+|+.|.|||.+|..++. .. . ..++++ +.. ..+..++.+.+.. . .. . ....+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~--~~--~-~~~liv-~P~----~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAIN--EL--S-TPTLIV-VPT----LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHH--HS--C-SCEEEE-ESS----HHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHH--Hc--C-CCEEEE-eCC----HHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 78999999999999987775 22 1 223333 211 1233333333221 1 00 0 01122
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEec
Q 042791 105 SLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTR 155 (761)
Q Consensus 105 ~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr 155 (761)
.+.... +.+.++--+||+|+++......+..+...+. ...++.+|..
T Consensus 181 ~l~~~~-~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSAT 227 (237)
T 2fz4_A 181 SAYVNA-EKLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTAT 227 (237)
T ss_dssp HHHHTH-HHHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEES
T ss_pred HHHhhH-HHhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecC
Confidence 222222 2333445599999998765555555554433 2445666654
No 410
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.85 E-value=0.062 Score=53.83 Aligned_cols=80 Identities=14% Similarity=0.100 Sum_probs=45.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhCCce
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASGLNEFQSLMSRIQSSIKGKK 118 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (761)
..++|.|+.|+||||+++.++. ... ...+.+.+........... -+.+..- .+ ........+...+..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g--~~~-~~~g~i~i~~~~e~~~~~~----~~~i~~~-~g--gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME--FIP-KEERIISIEDTEEIVFKHH----KNYTQLF-FG--GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG--GSC-TTSCEEEEESSCCCCCSSC----SSEEEEE-CB--TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhC--CCc-CCCcEEEECCeeccccccc----hhEEEEE-eC--CChhHHHHHHHHhhhCC
Confidence 4789999999999999999997 332 2345555543221110000 0000000 00 11223445667777788
Q ss_pred EEEEEeCCCC
Q 042791 119 NFLVLDDVWD 128 (761)
Q Consensus 119 ~LlvlDd~~~ 128 (761)
-++++|+...
T Consensus 242 ~ilildE~~~ 251 (330)
T 2pt7_A 242 DRIILGELRS 251 (330)
T ss_dssp SEEEECCCCS
T ss_pred CEEEEcCCCh
Confidence 8999999843
No 411
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.84 E-value=0.028 Score=52.58 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 412
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.82 E-value=0.024 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...|+|.|++|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999987
No 413
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.80 E-value=0.078 Score=64.11 Aligned_cols=85 Identities=19% Similarity=0.236 Sum_probs=54.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCcHHHHHHHHH
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESA-----SGLNEFQSLMSRIQ 111 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~~ 111 (761)
....+.|.|++|+||||||.+++. .....-..++|++........ . ++.++... ......+++...++
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~--~aa~~g~~VlyiS~Ees~~ql--~---A~~lGvd~~~L~i~~~~~leei~~~l~ 803 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPI--Y---ARKLGVDIDNLLCSQPDTGEQALEICD 803 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHH--H---HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHH--HHHHcCCCeEEEeccchHHHH--H---HHHcCCChhheEEecCCcHHHHHHHHH
Confidence 456899999999999999999987 344443468888776655432 1 44444221 12234556655555
Q ss_pred HHhC-CceEEEEEeCCCC
Q 042791 112 SSIK-GKKNFLVLDDVWD 128 (761)
Q Consensus 112 ~~l~-~~~~LlvlDd~~~ 128 (761)
+..+ .+.-++|+|.+..
T Consensus 804 ~lv~~~~~~lVVIDsLq~ 821 (1706)
T 3cmw_A 804 ALARSGAVDVIVVDSVAA 821 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHccCCCEEEEechhh
Confidence 4332 3455999999854
No 414
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.78 E-value=0.053 Score=53.45 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=29.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCC
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFD 81 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~ 81 (761)
...+++|.|+.|+||||+++.++. ..... .+.+++...+...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag--~l~~~-~g~V~l~g~d~~r 140 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH--RLKNE-GTKVLMAAGDTFR 140 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH--HHHHT-TCCEEEECCCCSC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH--HHHHc-CCeEEEEeecccc
Confidence 467999999999999999999997 44332 3444444444333
No 415
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.76 E-value=0.07 Score=47.60 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.++++|.|+.|+||||+++.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 416
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.70 E-value=0.033 Score=50.80 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+|+|.|+.|+||||+++.+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999986
No 417
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.68 E-value=0.067 Score=50.42 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
....|+|.|++|+||||+++.++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999997
No 418
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.68 E-value=0.12 Score=47.98 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKR 66 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~ 66 (761)
...|+|.|+.|+||||+++.+++ .+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~--~l~~ 32 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE--RLRE 32 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH--HHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH--HHHH
Confidence 46899999999999999999997 4543
No 419
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.66 E-value=0.063 Score=51.70 Aligned_cols=107 Identities=14% Similarity=0.239 Sum_probs=54.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC-CCHHHHHHHHHH--HhcCCCCCCCcHHHHHHHHHHHh
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT-FDQIRIAKAIIE--GLGESASGLNEFQSLMSRIQSSI 114 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~~~~~l 114 (761)
..+++|.|+.|+||||+++.+.. .....+.+.+++..... .-..... .+.. .++.. .. .....+...+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~~~-~~v~q~~~gl~---~~---~l~~~la~aL 95 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHKK-SIVNQREVGED---TK---SFADALRAAL 95 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCSS-SEEEEEEBTTT---BS---CHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCCcc-eeeeHHHhCCC---HH---HHHHHHHHHH
Confidence 46899999999999999999987 44433334443322110 0000000 0000 00000 11 1234455565
Q ss_pred CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchh
Q 042791 115 KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNES 158 (761)
Q Consensus 115 ~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~ 158 (761)
..++-++++|+.. +........... ..|.-|++|+.+..
T Consensus 96 ~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 96 REDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp HHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred hhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcch
Confidence 5566688889984 222232322222 23555777777644
No 420
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.64 E-value=0.042 Score=51.46 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+.+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999974
No 421
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.62 E-value=0.075 Score=53.18 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=33.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCC
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFD 81 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~ 81 (761)
...+++++.|.||+||||+|..++. .+...-..++.+++....+
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~--~la~~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAI--QLAKVRRSVLLLSTDPAHN 57 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH--HHTTSSSCEEEEECCSSCH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHH--HHHhCCCcEEEEECCCCCC
Confidence 3467899999999999999988887 4555555677787765433
No 422
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.58 E-value=0.038 Score=53.11 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+|+|.|+.|+||||+++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999995
No 423
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.56 E-value=0.054 Score=49.51 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
....|+|.|.+|+|||||+.++...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457889999999999999998863
No 424
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.55 E-value=0.08 Score=51.47 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=29.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT 79 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (761)
++|.|.|.||+||||+|..++. .+...-..++.+++...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~--~la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS--GLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHTTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHH--HHHHCCCcEEEEcCCCC
Confidence 4677789999999999998887 55544456888877543
No 425
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.51 E-value=0.076 Score=51.37 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=23.2
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 35 QNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 35 ~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+..++++.|.||+||||++..++.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHH
Confidence 45678999999999999999999986
No 426
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.48 E-value=0.043 Score=51.54 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=29.2
Q ss_pred cccchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 15 GRVDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 15 gr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+..+..+.+...+.. ...+.|+|.|.+|+|||||+.++..
T Consensus 13 ~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 13 ENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 344455555555532 2357899999999999999999886
No 427
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.46 E-value=0.042 Score=53.63 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.++|+|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46889999999999999999997
No 428
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.42 E-value=0.052 Score=51.37 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.++.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999996
No 429
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.38 E-value=0.03 Score=53.45 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+.|+|.|++|+||||+++.++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999997
No 430
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.38 E-value=0.085 Score=53.07 Aligned_cols=42 Identities=24% Similarity=0.364 Sum_probs=32.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhh--ccCCeeEEEEecCC
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVK--RNFEKVIWVCVSNT 79 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~--~~f~~~~~v~~~~~ 79 (761)
...+++++.|.||+||||+|..++. ... ..-..++.++....
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~--~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAV--QLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHH--HHHHHCTTSCEEEEECCSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH--HHHHhcCCCeEEEEECCCC
Confidence 3458999999999999999999887 455 45556777776643
No 431
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.33 E-value=0.052 Score=53.71 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.++|+|.|+.|+|||||+..+++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999998
No 432
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.33 E-value=0.03 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=16.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHh-c
Q 042791 38 LQVISLVGLGGIGKTTLAQLAY-N 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~-~ 60 (761)
..+++|.|+.|+||||+++.++ .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999999 5
No 433
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.32 E-value=0.17 Score=55.26 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...++|.|+.|+|||||++.++.
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999999986
No 434
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.30 E-value=0.042 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.172 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...|+|.|++|+||||+|+.+++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999997
No 435
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.27 E-value=0.076 Score=50.59 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...+.++|++|+|||.+|.++++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999999996
No 436
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.27 E-value=0.044 Score=51.43 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+.+|+|.|++|+||||+++.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 437
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.27 E-value=0.098 Score=63.28 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=59.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCcHHHHHHHH
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESA-----SGLNEFQSLMSRI 110 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~ 110 (761)
++.++|-|+|+.|+||||||.+++. +.+..-..++|+...+..+..- ++.++... .++...++..+.+
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 4568999999999999999988886 5666667788998877666542 55555432 2233445556656
Q ss_pred HHHhC-CceEEEEEeCC
Q 042791 111 QSSIK-GKKNFLVLDDV 126 (761)
Q Consensus 111 ~~~l~-~~~~LlvlDd~ 126 (761)
...++ +..-++|+|-|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 55554 34559999987
No 438
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.23 E-value=0.071 Score=52.15 Aligned_cols=40 Identities=28% Similarity=0.307 Sum_probs=29.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhcc----------CCeeEEEEecCC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRN----------FEKVIWVCVSNT 79 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~----------f~~~~~v~~~~~ 79 (761)
..++.|.|++|+|||||+..++. ..... -..++|+.....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~--~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA--QIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH--HHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH--HHhcCCCcCCCccCCCccEEEEECCCC
Confidence 46899999999999999999886 23321 234677776553
No 439
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.23 E-value=0.039 Score=52.98 Aligned_cols=38 Identities=26% Similarity=0.218 Sum_probs=26.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEe
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 76 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~ 76 (761)
..+++|.|+.|+|||||++.++..-.. ..-..++|+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~ 67 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTL 67 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEc
Confidence 468999999999999999998842111 23344556543
No 440
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.23 E-value=0.073 Score=53.63 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=29.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCC
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFD 81 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~ 81 (761)
...+++|.|+.|+||||+++.++. ..... .+.+.+...+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag--~l~~~-~G~V~l~g~D~~r 197 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH--RLKNE-GTKVLMAAGDTFR 197 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH--HHHHT-TCCEEEECCCCSC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh--hcccc-CCEEEEecccccc
Confidence 468999999999999999999997 44433 3444444444333
No 441
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.22 E-value=0.11 Score=48.26 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=24.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKR 66 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~ 66 (761)
.+...|+|.|..|+||||+++.+.+ .+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~--~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE--YLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH--HHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHhh
Confidence 4568899999999999999999998 4443
No 442
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.22 E-value=0.021 Score=53.34 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 688999999999999999987
No 443
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.22 E-value=0.053 Score=52.81 Aligned_cols=24 Identities=33% Similarity=0.224 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+++++|.|+.|+||||||..+++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 467899999999999999999997
No 444
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.21 E-value=0.05 Score=48.99 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+.|+|.|++|+||||||.+++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999987
No 445
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.18 E-value=0.045 Score=53.97 Aligned_cols=23 Identities=35% Similarity=0.329 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+.|+|.|+.|+||||+|+.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999997
No 446
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.17 E-value=0.042 Score=51.30 Aligned_cols=21 Identities=38% Similarity=0.355 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 447
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.13 E-value=0.045 Score=54.32 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..|+|.|++|+||||+|++++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999999986
No 448
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.09 E-value=0.046 Score=50.40 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
+|+|.|+||+||+|.|+.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999997
No 449
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.06 E-value=0.045 Score=51.46 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 450
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.05 E-value=0.1 Score=51.37 Aligned_cols=39 Identities=28% Similarity=0.323 Sum_probs=30.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT 79 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (761)
++|.|+|.||+||||+|..++. .+...-..++.+++...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~--~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVA--ALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEEEEECSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHH--HHHHCCCeEEEEecCCC
Confidence 5777899999999999998887 45544456777876543
No 451
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.03 E-value=0.048 Score=54.15 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
++|+|.|+.|+||||+|+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999997
No 452
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.03 E-value=0.092 Score=44.23 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=41.8
Q ss_pred CccccCCcCCc--cCchhhhccCCCcEEecCCccCcccccc-cccccccccEeecCCccc
Q 042791 463 KYLNLSELGIE--RLPETLCELYNLQKLDIRRCRNLRELPA-GIGKLMNMRTLLNGETYA 519 (761)
Q Consensus 463 ~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~ 519 (761)
..++.++++++ .+|..+. .+|++|+|++|. +..+|. .|..+++|+.|+|.+|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 36778888887 8886542 479999999988 556654 468899999999998864
No 453
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.01 E-value=0.13 Score=51.37 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=34.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHH
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIR 84 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (761)
.+++++.|.||+||||+|..++. .....-..++.++.....+...
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~--~lA~~G~rVLlvD~D~~~~l~~ 58 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATAL--WMARSGKKTLVISTDPAHSLSD 58 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEECCSSCCHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHH--HHHHCCCcEEEEeCCCCcCHHH
Confidence 57888999999999999999887 5555555677787665444443
No 454
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.00 E-value=0.044 Score=49.77 Aligned_cols=21 Identities=43% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
+++|.|+.|+||||+++.++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 588999999999999999987
No 455
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.98 E-value=0.064 Score=47.53 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
..|+|.|.+|+|||||++++...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999863
No 456
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.97 E-value=0.12 Score=56.68 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+.++|.|++|+||||++..+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999988775
No 457
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.92 E-value=0.044 Score=62.33 Aligned_cols=60 Identities=25% Similarity=0.236 Sum_probs=42.4
Q ss_pred CCCCCCceecccchHHHHHHHHhcCCcc-------CCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhcc
Q 042791 6 SLIDEGEVCGRVDEKNELLSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN 67 (761)
Q Consensus 6 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~ 67 (761)
+.+.-++.+|.++..+.+.+.+..+... +-...+.+.++|++|+|||+||++++. .....
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~--~~~~~ 538 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQAN 538 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH--HHTCC
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH--HhCCC
Confidence 4455667888888888888776532110 012346788999999999999999998 44433
No 458
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.90 E-value=0.033 Score=49.59 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
++++|+|+.|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999997
No 459
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.87 E-value=0.055 Score=51.32 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+++|.|+.|+|||||++.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999996
No 460
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.86 E-value=0.057 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.++.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999997
No 461
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.86 E-value=0.056 Score=54.97 Aligned_cols=24 Identities=29% Similarity=0.158 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+.++|+|++|+|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999996
No 462
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.85 E-value=0.25 Score=45.73 Aligned_cols=108 Identities=10% Similarity=0.016 Sum_probs=54.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHHHHHhcCCCCC--CCcHHHHHHHHHHHh
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAIIEGLGESASG--LNEFQSLMSRIQSSI 114 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l 114 (761)
..++.+++|+-|.||||-+...+. +....-..++.+.-...... . ..+.++++..... .....++.+.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~--r~~~~g~kvli~kp~~D~Ry-g--~~i~sr~G~~~~a~~i~~~~di~~~~---- 88 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVR--RFQIAQYKCLVIKYAKDTRY-S--SSFCTHDRNTMEALPACLLRDVAQEA---- 88 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH--HHHTTTCCEEEEEETTCCCC--------------CEEEEESSGGGGHHHH----
T ss_pred ceEEEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEeecCCccc-h--HHHHhhcCCeeEEEecCCHHHHHHHh----
Confidence 357899999999999988866665 33333333444443222111 1 2344444332110 11112222221
Q ss_pred CCceEEEEEeCCCCCCccCchhHHHhhcCCCCCcEEEEEecchh
Q 042791 115 KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNES 158 (761)
Q Consensus 115 ~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~ 158 (761)
++--+|++|++.-.. ....+...+.. .|..||+|.++.+
T Consensus 89 -~~~dvViIDEaQF~~--~v~el~~~l~~--~gi~VI~~GL~~D 127 (234)
T 2orv_A 89 -LGVAVIGIDEGQFFP--DIVEFCEAMAN--AGKTVIVAALDGT 127 (234)
T ss_dssp -TTCSEEEESSGGGCT--THHHHHHHHHH--TTCEEEEECCSBC
T ss_pred -ccCCEEEEEchhhhh--hHHHHHHHHHh--CCCEEEEEecccc
Confidence 223399999995542 25555555554 4678999999844
No 463
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.84 E-value=0.13 Score=52.00 Aligned_cols=41 Identities=29% Similarity=0.364 Sum_probs=31.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecC
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN 78 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (761)
+..+++++.|.||+||||+|..++. .....-..++.++...
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~--~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGV--YLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHH--HHHHSSCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHH--HHHHCCCeEEEEeCCC
Confidence 3467888999999999999998887 5555545677776655
No 464
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.83 E-value=0.39 Score=45.36 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 042791 39 QVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+.+++.|+.|+||||++....-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 5789999999999998766554
No 465
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.80 E-value=0.049 Score=51.13 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 466
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.78 E-value=0.12 Score=53.79 Aligned_cols=86 Identities=19% Similarity=0.177 Sum_probs=50.3
Q ss_pred CcEEEEEEcCCCCcHHHHH-HHHhcChhhhccCCe-eEEEEecCCC-CHHHHHHHHHHHhcCC-------CCCCCcHHH-
Q 042791 37 GLQVISLVGLGGIGKTTLA-QLAYNNDEVKRNFEK-VIWVCVSNTF-DQIRIAKAIIEGLGES-------ASGLNEFQS- 105 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla-~~~~~~~~~~~~f~~-~~~v~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~- 105 (761)
+.+.++|.|.+|+|||+|| .++++. . .-+. ++|+-++... ...++.+.+...-... ..+......
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 3457789999999999996 677763 2 3343 4677777644 3445555555422111 112221111
Q ss_pred ----HHHHHHHHh--CCceEEEEEeCC
Q 042791 106 ----LMSRIQSSI--KGKKNFLVLDDV 126 (761)
Q Consensus 106 ----~~~~~~~~l--~~~~~LlvlDd~ 126 (761)
..-.+.+++ +++.+|+++||+
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 112233434 478999999998
No 467
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.78 E-value=0.31 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...++|.|+.|.|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 468
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.76 E-value=0.053 Score=50.27 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
+|+|.|++|+||||+++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999986
No 469
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.76 E-value=0.15 Score=47.90 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=26.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhc-cCCeeEEE
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKR-NFEKVIWV 74 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~-~f~~~~~v 74 (761)
...|+|.|++|+||||+++.+++ .+.. .+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~--~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVE--TLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHH--HHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHhcCCCeeeee
Confidence 46899999999999999999997 4443 34434444
No 470
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.76 E-value=0.13 Score=53.44 Aligned_cols=85 Identities=18% Similarity=0.159 Sum_probs=50.0
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHhcChhhhccCCe-eEEEEecCCC-CHHHHHHHHHHHhcC-------CCCCCCcHHH--
Q 042791 38 LQVISLVGLGGIGKTTLA-QLAYNNDEVKRNFEK-VIWVCVSNTF-DQIRIAKAIIEGLGE-------SASGLNEFQS-- 105 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla-~~~~~~~~~~~~f~~-~~~v~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~-- 105 (761)
.+.++|.|.+|+|||+|| .++++. . .-+. ++|+-++... ...++.+.+...-.. ...+......
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 457889999999999996 677773 2 2343 4677777644 344555555542111 1122221111
Q ss_pred ---HHHHHHHHh--CCceEEEEEeCC
Q 042791 106 ---LMSRIQSSI--KGKKNFLVLDDV 126 (761)
Q Consensus 106 ---~~~~~~~~l--~~~~~LlvlDd~ 126 (761)
..-.+.+++ +++.+|+++||+
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 122233434 478999999998
No 471
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.73 E-value=0.028 Score=55.20 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=18.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 472
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.71 E-value=0.056 Score=48.99 Aligned_cols=21 Identities=43% Similarity=0.498 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042791 40 VISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 40 ~v~i~G~~GiGKTtla~~~~~ 60 (761)
.|+|.|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 467999999999999999987
No 473
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.67 E-value=0.12 Score=48.33 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=20.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKR 66 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~ 66 (761)
+...|+|.|+.|+||||+++.+++ .+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~--~l~~ 51 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD--RLQE 51 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH--HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHh
Confidence 356899999999999999999998 4543
No 474
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.66 E-value=0.093 Score=56.60 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=27.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEec
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 77 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (761)
..+++|.|++|+|||||++.++. .....-..++|+...
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g--~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVE--NACANKERAILFAYE 318 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH--HHHTTTCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH--HHHhCCCCEEEEEEe
Confidence 46899999999999999999986 333222235566543
No 475
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.63 E-value=0.063 Score=52.02 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.++.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999986
No 476
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.61 E-value=0.18 Score=46.67 Aligned_cols=34 Identities=24% Similarity=0.494 Sum_probs=25.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhc-cCCeeEEE
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVKR-NFEKVIWV 74 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~~-~f~~~~~v 74 (761)
..|++-|+.|+||||+++.+++ .+.. .+..+.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~--~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVE--TLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHH--HHHHTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHHHcCCCcceee
Confidence 5789999999999999999997 4443 33344443
No 477
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.60 E-value=0.37 Score=52.41 Aligned_cols=124 Identities=12% Similarity=0.072 Sum_probs=62.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhh-cc-C--CeeEEEEec--C--CCCHH--------------HHHHHHHHHhcCC
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNNDEVK-RN-F--EKVIWVCVS--N--TFDQI--------------RIAKAIIEGLGES 96 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~~~~~-~~-f--~~~~~v~~~--~--~~~~~--------------~~~~~i~~~l~~~ 96 (761)
.+++|.|+.|+|||||++.++.-..-. +. . ..+.|+.-. . ..+.. .....+++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 578999999999999999998631111 10 0 113333211 0 01111 2223344444432
Q ss_pred C-----CC-CCcHHHHHHHHHHHhCCceEEEEEeCCCCC-CccCchhHHHhhcCC--CCCcEEEEEecchhhhhh
Q 042791 97 A-----SG-LNEFQSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG--LHGSKILVTTRNESVARM 162 (761)
Q Consensus 97 ~-----~~-~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~~~~~--~~~~~iiiTtr~~~~~~~ 162 (761)
. .. ...-+...-.+..++-.++-++++|+--.. +......+...+... ..|..||++|.+...+..
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~ 533 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATY 533 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 1 11 122233344456777778889999986221 111122233333221 125558888888655443
No 478
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.57 E-value=0.037 Score=60.46 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=30.8
Q ss_pred ceecccchHHHHHHHHhcCCccC-----CCCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 12 EVCGRVDEKNELLSKLLCESSEQ-----QNGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 12 ~~vgr~~~~~~l~~~l~~~~~~~-----~~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.++|.++..+.+...+....... -.....|.++|++|+|||++|++++.
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSST
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHH
Confidence 36777766555544443221000 00011588999999999999999997
No 479
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.57 E-value=0.3 Score=58.80 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
....++|+|+.|.|||||++.+..
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTT
T ss_pred CCcEEEEEecCCCcHHHHHHHhcc
Confidence 346899999999999999999987
No 480
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.55 E-value=0.065 Score=51.65 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999996
No 481
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.53 E-value=0.082 Score=51.21 Aligned_cols=23 Identities=48% Similarity=0.589 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 482
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.53 E-value=0.071 Score=50.40 Aligned_cols=25 Identities=24% Similarity=0.117 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 36 NGLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 36 ~~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
.+...++|.|+.|+||||+++.++.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999999999986
No 483
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.50 E-value=0.065 Score=52.58 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...++|+|+.|+|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 46899999999999999999986
No 484
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.47 E-value=0.087 Score=50.82 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.++.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999996
No 485
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.47 E-value=0.068 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 46899999999999999999996
No 486
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.45 E-value=0.067 Score=48.81 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
.-.|+|.|++|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457889999999999999999863
No 487
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.43 E-value=0.11 Score=49.72 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=30.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCH
Q 042791 41 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQ 82 (761)
Q Consensus 41 v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~ 82 (761)
|.|.|.||+||||+|..++. .+...-..++.+++....+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~--~la~~g~~VlliD~D~~~~l 42 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIK--IMASDYDKIYAVDGDPDSCL 42 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHH--HHTTTCSCEEEEEECTTSCH
T ss_pred EEEecCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCcCh
Confidence 45699999999999999887 45544466888887664443
No 488
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.40 E-value=0.15 Score=55.60 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
+...++|.|+.|.|||||++.+..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 346899999999999999999886
No 489
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.39 E-value=0.14 Score=51.21 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=31.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCC
Q 042791 37 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT 79 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (761)
..+++++.|.||+||||+|..++. .....-..+..++....
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~--~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAI--QMSKVRSSVLLISTDPA 58 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHH--HHHTSSSCEEEEECCTT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHH--HHHHCCCeEEEEECCCC
Confidence 356888999999999999988887 55555456777766543
No 490
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.36 E-value=0.071 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
++.|+|.|..|+||||+++.+++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999997
No 491
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.35 E-value=0.12 Score=53.08 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=50.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcChhhhccCC----eeEEEEecCCC-CHHHHHHHHHHHhcC-------CCCCCCcHHH
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFE----KVIWVCVSNTF-DQIRIAKAIIEGLGE-------SASGLNEFQS 105 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~----~~~~v~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~ 105 (761)
.+.++|.|.+|+|||+|+.++++. ...+.+ .++|+-++... ...++.+.+...-.. ...+......
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~--~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQ--ATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHH--CBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHH--HHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 355789999999999999998873 222223 56677666543 345566655442101 1122222111
Q ss_pred -----HHHHHHHHh---CCceEEEEEeCC
Q 042791 106 -----LMSRIQSSI---KGKKNFLVLDDV 126 (761)
Q Consensus 106 -----~~~~~~~~l---~~~~~LlvlDd~ 126 (761)
..-.+.+++ .++.+|+++||+
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 122234444 368999999998
No 492
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.31 E-value=0.15 Score=53.21 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=50.8
Q ss_pred CcEEEEEEcCCCCcHHHHH-HHHhcChhhh----ccCC-eeEEEEecCCC-CHHHHHHHHHHHhcC-------CCCCCCc
Q 042791 37 GLQVISLVGLGGIGKTTLA-QLAYNNDEVK----RNFE-KVIWVCVSNTF-DQIRIAKAIIEGLGE-------SASGLNE 102 (761)
Q Consensus 37 ~~~~v~i~G~~GiGKTtla-~~~~~~~~~~----~~f~-~~~~v~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~ 102 (761)
+.+.++|.|.+|+|||+|| .++++..... .+-+ .++|+-++... ...++.+.+...-.. ...+...
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~ 240 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAA 240 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCH
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCH
Confidence 3456789999999999995 6777642210 1133 46777777654 344555555542111 1122221
Q ss_pred HHH-----HHHHHHHHh--CCceEEEEEeCC
Q 042791 103 FQS-----LMSRIQSSI--KGKKNFLVLDDV 126 (761)
Q Consensus 103 ~~~-----~~~~~~~~l--~~~~~LlvlDd~ 126 (761)
... ..-.+.+++ +++.+|+++||+
T Consensus 241 ~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 241 PLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 111 112233334 478999999998
No 493
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.30 E-value=0.087 Score=47.80 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
...|+|.|.+|+|||||++++...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999873
No 494
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.29 E-value=0.074 Score=51.18 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.++.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 495
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.28 E-value=0.13 Score=47.38 Aligned_cols=43 Identities=26% Similarity=0.224 Sum_probs=30.8
Q ss_pred EEEEEE-cCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHH
Q 042791 39 QVISLV-GLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQI 83 (761)
Q Consensus 39 ~~v~i~-G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (761)
++|.|+ +.||+||||+|..++. .+...-..++.+++....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~--~la~~g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT--ALSRSGYNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH--HHHHCCCeEEEEECCCCCCHH
Confidence 456666 6899999999999987 555555568888876544433
No 496
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.28 E-value=0.074 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 497
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.27 E-value=0.15 Score=55.95 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
...++|.|+.|.|||||++.++.
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 498
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.26 E-value=0.054 Score=50.29 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 042791 38 LQVISLVGLGGIGKTTLAQLAYN 60 (761)
Q Consensus 38 ~~~v~i~G~~GiGKTtla~~~~~ 60 (761)
..+++|.|+.|+|||||++.++.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999986
No 499
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.25 E-value=0.083 Score=46.37 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 042791 39 QVISLVGLGGIGKTTLAQLAYNN 61 (761)
Q Consensus 39 ~~v~i~G~~GiGKTtla~~~~~~ 61 (761)
+.|+|.|.+|+|||||++++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998863
No 500
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.22 E-value=0.17 Score=56.23 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=37.5
Q ss_pred cchHHHHHHHHhcCCccCCCCcEEEEEEcCCCCcHHHHHHHHhcChhhhccCCeeEEEEecCCCCHHHHHHHH
Q 042791 17 VDEKNELLSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFDQIRIAKAI 89 (761)
Q Consensus 17 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 89 (761)
+.+.+++...|... ....|+||||+|||+.+.++... .+.. ...+.++...+..++.+...+
T Consensus 192 ~~Q~~AV~~al~~~--------~~~lI~GPPGTGKT~ti~~~I~~-l~~~--~~~ILv~a~TN~AvD~i~erL 253 (646)
T 4b3f_X 192 TSQKEAVLFALSQK--------ELAIIHGPPGTGKTTTVVEIILQ-AVKQ--GLKVLCCAPSNIAVDNLVERL 253 (646)
T ss_dssp HHHHHHHHHHHHCS--------SEEEEECCTTSCHHHHHHHHHHH-HHHT--TCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--------CceEEECCCCCCHHHHHHHHHHH-HHhC--CCeEEEEcCchHHHHHHHHHH
Confidence 44556666666532 26789999999999877555542 2222 234566665554555555444
Done!