BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042793
(545 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z6D|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
pdb|2Z6D|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
Length = 130
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 13 RFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYG 72
RFLQ P D + V++IR C++ G + G LLN++KDG+P N L ++PI
Sbjct: 55 RFLQ---------GPDTDKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD 105
Query: 73 DDETITHVIGIQ 84
D IG+Q
Sbjct: 106 DQGNTIKFIGMQ 117
>pdb|1N9L|A Chain A, Crystal Structure Of The Phot-lov1 Domain From
Chlamydomonas Reinhardtii In The Dark State.
pdb|1N9N|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State. Data Set
Of A Single Crystal.
pdb|1N9O|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State.
Composite Data Set
Length = 109
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 13 RFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYG 72
RFLQ G D V +IR +++G LLN+RKDG+P N L ++PI
Sbjct: 42 RFLQGEG---------TDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKT 92
Query: 73 DDETITHVIGIQ 84
D ++ +G+Q
Sbjct: 93 PDGRVSKFVGVQ 104
>pdb|3P7N|A Chain A, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
pdb|3P7N|B Chain B, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
Length = 258
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 33 VVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEANV- 91
+ +IR+ + E E+LN++KDG+P N + ++PIY DD+ + + +G Q + +
Sbjct: 123 LTDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDDQP 182
Query: 92 DLGPVPGYPVKEFLKS-SERQRSFFSGNRTFPIGDRNVCREVCGIFQLSDEVISL 145
++G E LK+ S RQ + G RN +EV LS++ + +
Sbjct: 183 NMGMARRERAAEMLKTLSPRQLEVTT---LVASGLRN--KEVAARLGLSEKTVKM 232
>pdb|2Z6C|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
pdb|2Z6C|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
Length = 129
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 13 RFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYG 72
RFLQ G D+ +++IR L G + G +LN++KDG+ N L ++PI
Sbjct: 56 RFLQGSG---------TDADELAKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPIKD 106
Query: 73 DDETITHVIGIQ 84
+ + IG+Q
Sbjct: 107 ESGKVLKFIGMQ 118
>pdb|3SW1|A Chain A, Structure Of A Full-Length Bacterial Lov Protein
pdb|3SW1|B Chain B, Structure Of A Full-Length Bacterial Lov Protein
Length = 162
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 35 SEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEANVDL 93
+ IR+ + EG + L N+RKDGS N L ++P+ D + T+ IGIQ V+L
Sbjct: 87 ARIRKAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVEL 145
>pdb|3IS2|B Chain B, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid
Form Of Vivid
Length = 154
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 13 RFLQCRG----PFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLS 68
RFLQ P + R++ VDS+ ++ +R+ ++ E Q E++NF+K+G +N L +
Sbjct: 77 RFLQSPDGMVKPKSTRKY--VDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMI 134
Query: 69 PIYGDDETITHVIGIQFFTE 88
P+ + + +G Q TE
Sbjct: 135 PVRDETGEYRYSMGFQCETE 154
>pdb|3IS2|A Chain A, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid
Form Of Vivid
Length = 154
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 13 RFLQCRG----PFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLS 68
RFLQ P + R++ VDS+ ++ +R+ ++ E Q E++NF+K+G +N L +
Sbjct: 77 RFLQSPDGMVKPKSTRKY--VDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMI 134
Query: 69 PIYGDDETITHVIGIQFFTE 88
P+ + + +G Q TE
Sbjct: 135 PVRDETGEYRYSMGFQCETE 154
>pdb|3HJK|A Chain A, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid
(Vvd).
pdb|3HJK|B Chain B, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid
(Vvd)
Length = 154
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 13 RFLQCRG----PFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLS 68
RFLQ P + R++ VDS+ ++ +R+ ++ E Q E++NF+K+G +N L +
Sbjct: 77 RFLQSPDGMVKPKSTRKY--VDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMI 134
Query: 69 PIYGDDETITHVIGIQFFTE 88
P+ + + +G Q TE
Sbjct: 135 PVRDETGEYRYSMGFQCETE 154
>pdb|3HJI|A Chain A, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant Of
Vivid (Vvd).
pdb|3HJI|B Chain B, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant Of
Vivid (Vvd)
Length = 154
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 13 RFLQCRG----PFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLS 68
RFLQ P + R++ VDS+ ++ +R+ ++ E Q E++NF+K+G +N L +
Sbjct: 77 RFLQSPDGMVKPKSTRKY--VDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMI 134
Query: 69 PIYGDDETITHVIGIQFFTE 88
P+ + + +G Q TE
Sbjct: 135 PVRDETGEYRYSMGFQCETE 154
>pdb|3RH8|B Chain B, Crystal Structure Of The Light-State Dimer Of Fungal
Blue-Light Photoreceptor Vivid
pdb|3RH8|D Chain D, Crystal Structure Of The Light-State Dimer Of Fungal
Blue-Light Photoreceptor Vivid
Length = 148
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 13 RFLQCRG----PFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLS 68
RFLQ P + R++ VDS+ ++ IR+ ++ E Q E++NF+K+G +N L +
Sbjct: 73 RFLQSPDGMVKPKSTRKY--VDSNTINTIRKAIDRNAEVQVEVVNFKKNGQRFVNFLTII 130
Query: 69 PIYGDDETITHVIGIQ 84
P+ + + +G Q
Sbjct: 131 PVRDETGEYRYSMGFQ 146
>pdb|3D72|A Chain A, 1.65 Angstrom Crystal Structure Of The Cys71val Variant In
The Fungal Photoreceptor Vvd
pdb|3D72|B Chain B, 1.65 Angstrom Crystal Structure Of The Cys71val Variant In
The Fungal Photoreceptor Vvd
Length = 149
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 13 RFLQCRG----PFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLS 68
RFLQ P + R++ VDS+ ++ +R+ ++ E Q E++NF+K+G +N L +
Sbjct: 74 RFLQSPDGMVKPKSTRKY--VDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMI 131
Query: 69 PIYGDDETITHVIGIQ 84
P+ + + +G Q
Sbjct: 132 PVRDETGEYRYSMGFQ 147
>pdb|2PD7|A Chain A, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light
Photoreceptor Vivid
pdb|2PD7|B Chain B, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light
Photoreceptor Vivid
pdb|2PDR|A Chain A, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDR|B Chain B, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDR|C Chain C, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDR|D Chain D, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDT|A Chain A, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
pdb|2PDT|B Chain B, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
pdb|2PDT|C Chain C, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
pdb|2PDT|D Chain D, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
Length = 149
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 13 RFLQCRG----PFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLS 68
RFLQ P + R++ VDS+ ++ +R+ ++ E Q E++NF+K+G +N L +
Sbjct: 74 RFLQSPDGMVKPKSTRKY--VDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMI 131
Query: 69 PIYGDDETITHVIGIQ 84
P+ + + +G Q
Sbjct: 132 PVRDETGEYRYSMGFQ 147
>pdb|2PD8|A Chain A, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of
Vivid
pdb|2PD8|B Chain B, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of
Vivid
Length = 149
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 13 RFLQCRG----PFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLS 68
RFLQ P + R++ VDS+ ++ +R+ ++ E Q E++NF+K+G +N L +
Sbjct: 74 RFLQSPDGMVKPKSTRKY--VDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMI 131
Query: 69 PIYGDDETITHVIGIQ 84
P+ + + +G Q
Sbjct: 132 PVRDETGEYRYSMGFQ 147
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 27/180 (15%)
Query: 238 AVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSP--PPGRWGHTLSCVN-GS 294
GN V GG N +N+ L ++ + +++ VSS P R HT + ++ +
Sbjct: 395 VAGNDVFYMGGS--NPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN 452
Query: 295 HLVVFGG--CGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVS 351
L++ GG QGL +D ++ D+ K W I L+ R HS+C+L DG LI+
Sbjct: 453 QLLLIGGRKAPHQGL-SDNWIFDM--KTREWSMIKSLSHT--RFRHSACSLPDGNVLILG 507
Query: 352 GGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSG 411
G +LL + V EI TP V G L F ++K G
Sbjct: 508 GVTEGPAMLLYN-----------VTEEIFKDVTPKDEFFQNSLVSAG---LEFDPVSKQG 553
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 83/211 (39%), Gaps = 36/211 (17%)
Query: 234 FSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNG 293
F+ + N+++L GG Q ++D ++ D+ + EW + S R+ H+ +
Sbjct: 445 FTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR--EWSMI--KSLSHTRFRHSACSLPD 500
Query: 294 SHLVVFGGC--GRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTK---- 347
++++ GG G LL +V EI P + +S G +
Sbjct: 501 GNVLILGGVTEGPAMLLYNV-----------TEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549
Query: 348 ----LIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPP------SRLGHTLSVYG 397
+I+ GG D + + E P+T R G +
Sbjct: 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATE---PITVIKKLQHPLFQRYGSQIKYIT 606
Query: 398 GRKILMFGGLAKSGPLRFRSSDVFTMD-LSE 427
RK+L+ GG + SG L R++ + ++D LSE
Sbjct: 607 PRKLLIVGGTSPSG-LFDRTNSIISLDPLSE 636
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 24/118 (20%)
Query: 378 EIPVTWTPPSRLGHTLS-VYGGRKILMFGGLAKSGPLRFRSSD-VFTMDLSEEEPCWRCV 435
E+ + P +R+ HT + + ++L+ GG + P + S + +F M E W +
Sbjct: 430 EVSSSEVPVARMCHTFTTISRNNQLLLIGG--RKAPHQGLSDNWIFDMKTRE----WSMI 483
Query: 436 TXXXXXXXXXXXXXXXXXRLDHVAVSLPGGRILIFGGSVAG----LHSATQLYLLDPT 489
R H A SLP G +LI GG G L++ T+ D T
Sbjct: 484 KSLSHT------------RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529
>pdb|4EES|A Chain A, Crystal Structure Of Ilov
pdb|4EET|B Chain B, Crystal Structure Of Ilov
pdb|4EET|D Chain D, Crystal Structure Of Ilov
Length = 115
Score = 36.2 bits (82), Expect = 0.042, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 13 RFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYG 72
RFLQ P D + V +IR + + E +L+N+ K G N L L P+
Sbjct: 46 RFLQ---------GPETDQATVQKIRDAIRDQRETTVQLINYTKSGKKFWNLLHLQPVRD 96
Query: 73 DDETITHVIGIQF 85
+ + IG+Q
Sbjct: 97 QKGELQYFIGVQL 109
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 11 GIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPI 70
+RFLQ P D + V +IR ++ E +L+N+ K G N L P+
Sbjct: 58 NMRFLQ---------GPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPM 108
Query: 71 YGDDETITHVIGIQF 85
+ + IG+Q
Sbjct: 109 RDQKGDVQYFIGVQL 123
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 27 PLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQF 85
P D + V +IR ++ E +L+N+ K G N L P+ + + IG+Q
Sbjct: 65 PETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQL 123
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 27 PLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQF 85
P D + V +IR ++ E +L+N+ K G N L P+ + + IG+Q
Sbjct: 65 PETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQL 123
>pdb|2V1A|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Dark Structure Of Lov2 (404-546))
pdb|2V1B|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Light Structure Of Lov2 (404-546))
Length = 144
Score = 35.8 bits (81), Expect = 0.067, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 13 RFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYG 72
RFLQ P D + V +IR ++ E +L+N+ K G N L P+
Sbjct: 49 RFLQ---------GPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRD 99
Query: 73 DDETITHVIGIQF 85
+ + IG+Q
Sbjct: 100 QKGDVQYFIGVQL 112
>pdb|2V0U|A Chain A, N- And C-terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-induced Signal Transduction (cryo Dark
Structure Of Lov2 (404-546))
pdb|2V0W|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Cryo-
Trapped Light Structure Of Lov2 (404-546))
Length = 146
Score = 35.8 bits (81), Expect = 0.067, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 13 RFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYG 72
RFLQ P D + V +IR ++ E +L+N+ K G N L P+
Sbjct: 51 RFLQ---------GPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRD 101
Query: 73 DDETITHVIGIQF 85
+ + IG+Q
Sbjct: 102 QKGDVQYFIGVQL 114
>pdb|4EER|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2 C426a Mutant
Length = 115
Score = 35.4 bits (80), Expect = 0.089, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 13 RFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYG 72
RFLQ P D + V +IR + + E +L+N+ K G N L P+
Sbjct: 46 RFLQ---------GPETDQATVQKIRDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRD 96
Query: 73 DDETITHVIGIQF 85
+ + IG+Q
Sbjct: 97 QKGELQYFIGVQL 109
>pdb|3ULF|A Chain A, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|B Chain B, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|C Chain C, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|D Chain D, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|E Chain E, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|F Chain F, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 170
Score = 35.4 bits (80), Expect = 0.092, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 13 RFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYG 72
RFLQ P D V +IR + +G++ LLN+R+DG+ N ++ +
Sbjct: 88 RFLQ---------GPETDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRD 138
Query: 73 DDETITHVIGIQ 84
I + +G+Q
Sbjct: 139 SKGNIVNYVGVQ 150
>pdb|3UE6|A Chain A, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|B Chain B, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|C Chain C, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|D Chain D, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|E Chain E, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|F Chain F, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 166
Score = 35.4 bits (80), Expect = 0.092, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 13 RFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYG 72
RFLQ P D V +IR + +G++ LLN+R+DG+ N ++ +
Sbjct: 84 RFLQ---------GPETDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRD 134
Query: 73 DDETITHVIGIQ 84
I + +G+Q
Sbjct: 135 SKGNIVNYVGVQ 146
>pdb|4EEP|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2
Length = 115
Score = 35.4 bits (80), Expect = 0.093, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 13 RFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYG 72
RFLQ P D + V +IR + + E +L+N+ K G N L P+
Sbjct: 46 RFLQ---------GPETDQATVQKIRDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRD 96
Query: 73 DDETITHVIGIQF 85
+ + IG+Q
Sbjct: 97 QKGELQYFIGVQL 109
>pdb|4EEU|A Chain A, Crystal Structure Of Philov2.1
Length = 118
Score = 35.0 bits (79), Expect = 0.10, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 27 PLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFF 86
P D + V +IR + + E +L+N+ K G N L L P+ + + IG+Q
Sbjct: 54 PETDQATVQKIRDAIRDQRETTVQLINYTKSGKKFWNLLHLQPVRDRKGGLQYFIGVQLV 113
Query: 87 TEANV 91
+V
Sbjct: 114 GSDHV 118
>pdb|2PR5|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
pdb|2PR5|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
pdb|2PR6|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
pdb|2PR6|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
Length = 132
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 17 CRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDET 76
CR F + +H D + V IR L+ ++ N++KDG+ N L + P+ +D+
Sbjct: 47 CR--FLQGKH--TDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIEDK- 101
Query: 77 ITHVIGIQ 84
T+ +GIQ
Sbjct: 102 -TYFVGIQ 108
>pdb|4HJ6|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HJ6|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 178
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 30 DSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQF 85
++ ++IR L+ G E Q L N+R + P N L L P+ G + + +G QF
Sbjct: 66 NAQARADIRDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQF 121
>pdb|4HJ4|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HJ4|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HNB|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HNB|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 177
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 30 DSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQF 85
++ ++IR L+ G E Q L N+R + P N L L P+ G + + +G QF
Sbjct: 65 NAQARADIRDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQF 120
>pdb|4HIA|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HIA|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 176
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 30 DSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQF 85
++ ++IR L+ G E Q L N+R + P N L L P+ G + + +G QF
Sbjct: 64 NAQARADIRDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQF 119
>pdb|4HJ3|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HJ3|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 176
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 35 SEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQF 85
++IR L+ G E Q L N+R + P N L L P+ G + + +G QF
Sbjct: 69 ADIRDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQF 119
>pdb|3T50|A Chain A, X-Ray Structure Of The Lov Domain From The Lov-Hk Sensory
Protein From Brucella Abortus (Dark State).
pdb|3T50|B Chain B, X-Ray Structure Of The Lov Domain From The Lov-Hk Sensory
Protein From Brucella Abortus (Dark State)
Length = 128
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 13 RFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYG 72
RFLQ G D + V I+ + +++N++K G NRL +SP++
Sbjct: 46 RFLQGHG---------TDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPVHN 96
Query: 73 DDETITHVIGIQFFTEANVDLGPVP 97
+ + H + Q +V L VP
Sbjct: 97 ANGRLQHFVSSQL----DVTLELVP 117
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 143 ISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWRMVCQ 181
++L +LS+L P+D+ CR + L ++ LWR C+
Sbjct: 26 LALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64
>pdb|1G28|A Chain A, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|B Chain B, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|C Chain C, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|D Chain D, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1JNU|A Chain A, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1JNU|B Chain B, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1JNU|C Chain C, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1JNU|D Chain D, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
Length = 104
Score = 32.0 bits (71), Expect = 0.87, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 13 RFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYG 72
RFLQ RG D V IR ++E + ++LN+ K G N L +
Sbjct: 39 RFLQGRG---------TDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFWNLFHLQVMRD 89
Query: 73 DDETITHVIGIQ 84
++ + + IG+Q
Sbjct: 90 ENGDVQYFIGVQ 101
>pdb|3L2O|B Chain B, Structure-Based Mechanism Of Dimerization-Dependent
Ubiquitination By The Scffbx4 Ubiquitin Ligase
Length = 312
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 143 ISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWR 177
+ L ILS+LSP D+ +GS + E ++ LWR
Sbjct: 12 VQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWR 46
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 138 LSDEVISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWRMV 179
L DE++ L I S L ++ V VC+R+Y L +E LW+ +
Sbjct: 12 LPDELL-LGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 138 LSDEVISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWRMV 179
L DE++ L I S L ++ V VC+R+Y L +E LW+ +
Sbjct: 12 LPDELL-LGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52
>pdb|1FS1|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS1|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 53
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 138 LSDEVISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWRMV 179
L DE++ L I S L ++ V VC+R+Y L +E LW+ +
Sbjct: 12 LPDELL-LGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52
>pdb|3BBN|S Chain S, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 92
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 371 MEKPVWREIPVTWTP-----PSRLGHTLSVYGGRKIL 402
+ K +EI VTW+ P+ +GHT++++ GR+ L
Sbjct: 22 LNKKAEKEIIVTWSRASTIIPTMIGHTIAIHNGREHL 58
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 143 ISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWRMVCQNAWGSETT-RVLETVPGAKRL 201
I+ ILS+L + + + VC+ +Y +T + LW+ + + +++ R L A+R
Sbjct: 22 IAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGL-----AERR 76
Query: 202 GWGR 205
GWG+
Sbjct: 77 GWGQ 80
>pdb|1LDK|E Chain E, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 41
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 137 QLSDEVISLKILSWLSPRDIASVGSVCRRFYELTKNEDLW 176
L DE++ L I S L ++ V VC+R+Y L +E LW
Sbjct: 3 SLPDELL-LGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41
>pdb|3NVO|A Chain A, The Soluble Domain Structure Of The Zntb Zn2+ Efflux
System
pdb|3NVO|B Chain B, The Soluble Domain Structure Of The Zntb Zn2+ Efflux
System
Length = 264
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 245 LFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRW 284
L G G ++P+ D V+D S +P W H++ + P RW
Sbjct: 21 LLDGRG-GVKPLEDNDVID--SQHPCWLHLNYTHPDSARW 57
>pdb|3NWI|A Chain A, The Soluble Domain Structure Of The Zntb Zn2+ Efflux
System
pdb|3NWI|B Chain B, The Soluble Domain Structure Of The Zntb Zn2+ Efflux
System
pdb|3NWI|C Chain C, The Soluble Domain Structure Of The Zntb Zn2+ Efflux
System
pdb|3NWI|D Chain D, The Soluble Domain Structure Of The Zntb Zn2+ Efflux
System
pdb|3NWI|E Chain E, The Soluble Domain Structure Of The Zntb Zn2+ Efflux
System
Length = 263
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 245 LFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRW 284
L G G ++P+ D V+D S +P W H++ + P RW
Sbjct: 20 LLDGRG-GVKPLEDNDVID--SQHPCWLHLNYTHPDSARW 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,354,926
Number of Sequences: 62578
Number of extensions: 750612
Number of successful extensions: 1645
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1604
Number of HSP's gapped (non-prelim): 51
length of query: 545
length of database: 14,973,337
effective HSP length: 104
effective length of query: 441
effective length of database: 8,465,225
effective search space: 3733164225
effective search space used: 3733164225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)