Query 042793
Match_columns 545
No_of_seqs 441 out of 3775
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 09:34:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02153 epithiospecifier prot 100.0 5.5E-42 1.2E-46 337.9 37.0 308 214-544 5-340 (341)
2 PLN02193 nitrile-specifier pro 100.0 2.6E-41 5.7E-46 344.7 37.7 300 216-544 151-469 (470)
3 KOG4693 Uncharacterized conser 100.0 1.6E-39 3.4E-44 282.5 23.0 278 228-529 11-313 (392)
4 KOG4441 Proteins containing BT 100.0 3.4E-37 7.4E-42 317.6 28.9 265 208-515 303-567 (571)
5 KOG4441 Proteins containing BT 100.0 1E-36 2.2E-41 314.1 29.8 285 217-544 261-547 (571)
6 TIGR03547 muta_rot_YjhT mutatr 100.0 3.3E-36 7.2E-41 298.1 32.1 279 226-542 3-345 (346)
7 TIGR03548 mutarot_permut cycli 100.0 8.5E-36 1.8E-40 291.8 32.5 276 229-538 2-323 (323)
8 PHA02713 hypothetical protein; 100.0 1.9E-36 4.2E-41 313.9 27.4 250 209-500 275-542 (557)
9 PRK14131 N-acetylneuraminic ac 100.0 3.1E-35 6.7E-40 292.9 31.1 282 226-544 24-369 (376)
10 PLN02193 nitrile-specifier pro 100.0 2.5E-34 5.5E-39 293.4 35.4 277 237-544 117-411 (470)
11 PHA02713 hypothetical protein; 100.0 1.6E-34 3.5E-39 299.6 30.4 260 242-544 259-534 (557)
12 PLN02153 epithiospecifier prot 100.0 1.8E-33 3.9E-38 277.3 29.9 258 210-488 54-338 (341)
13 KOG0379 Kelch repeat-containin 100.0 2.6E-33 5.5E-38 284.7 30.4 293 223-541 53-355 (482)
14 PHA03098 kelch-like protein; P 100.0 3.2E-33 7E-38 293.0 29.9 251 211-499 269-519 (534)
15 KOG4693 Uncharacterized conser 100.0 5.5E-34 1.2E-38 248.0 18.6 244 208-474 46-312 (392)
16 KOG4152 Host cell transcriptio 100.0 2.1E-33 4.6E-38 264.7 21.4 300 215-542 16-362 (830)
17 KOG1230 Protein containing rep 100.0 5.2E-33 1.1E-37 256.1 21.7 251 278-544 62-341 (521)
18 TIGR03547 muta_rot_YjhT mutatr 100.0 1.8E-31 3.9E-36 264.2 27.4 249 210-487 33-344 (346)
19 KOG1230 Protein containing rep 100.0 8.4E-32 1.8E-36 248.2 20.4 258 226-501 62-350 (521)
20 KOG0379 Kelch repeat-containin 100.0 3.7E-31 8.1E-36 269.0 26.6 241 278-543 56-301 (482)
21 PHA03098 kelch-like protein; P 100.0 9.1E-31 2E-35 274.5 29.8 259 241-544 251-512 (534)
22 PRK14131 N-acetylneuraminic ac 100.0 1.3E-30 2.7E-35 259.8 27.2 257 210-497 54-374 (376)
23 TIGR03548 mutarot_permut cycli 100.0 1.8E-30 3.9E-35 254.2 26.6 235 217-483 52-322 (323)
24 PHA02790 Kelch-like protein; P 100.0 4.2E-29 9.1E-34 255.8 28.6 211 236-498 267-477 (480)
25 PHA02790 Kelch-like protein; P 100.0 1.2E-27 2.5E-32 245.2 27.3 202 292-544 270-471 (480)
26 KOG4152 Host cell transcriptio 100.0 1.3E-27 2.9E-32 225.8 17.2 253 270-544 18-303 (830)
27 COG3055 Uncharacterized protei 99.9 1.2E-20 2.5E-25 172.9 24.0 286 227-545 33-376 (381)
28 COG3055 Uncharacterized protei 99.8 5.2E-18 1.1E-22 155.6 21.0 246 215-489 69-374 (381)
29 KOG2437 Muskelin [Signal trans 99.6 4E-16 8.6E-21 148.3 1.7 308 215-542 238-611 (723)
30 KOG2437 Muskelin [Signal trans 99.4 2.3E-13 4.9E-18 129.8 5.4 210 270-490 240-472 (723)
31 PF13964 Kelch_6: Kelch motif 99.2 9E-11 1.9E-15 79.8 6.5 50 230-283 1-50 (50)
32 PF13964 Kelch_6: Kelch motif 99.1 1.2E-10 2.7E-15 79.1 6.3 49 282-335 1-50 (50)
33 PF13426 PAS_9: PAS domain; PD 99.0 2.4E-09 5.2E-14 85.8 9.4 79 2-89 26-104 (104)
34 PF13415 Kelch_3: Galactose ox 99.0 1.7E-09 3.8E-14 72.9 6.1 48 240-291 1-49 (49)
35 PLN02772 guanylate kinase 99.0 4.8E-09 1E-13 101.3 11.0 89 450-544 21-109 (398)
36 PF13415 Kelch_3: Galactose ox 98.9 2.8E-09 6.1E-14 71.9 5.9 47 293-343 1-49 (49)
37 PF13418 Kelch_4: Galactose ox 98.9 2.1E-09 4.5E-14 72.7 4.2 46 282-329 1-47 (49)
38 PLN02772 guanylate kinase 98.9 1.8E-08 3.8E-13 97.4 11.5 88 228-319 22-110 (398)
39 PF01344 Kelch_1: Kelch motif; 98.8 4.6E-09 1E-13 70.4 4.2 45 282-329 1-46 (47)
40 PF01344 Kelch_1: Kelch motif; 98.8 5.5E-09 1.2E-13 70.0 4.1 44 230-275 1-44 (47)
41 PF13418 Kelch_4: Galactose ox 98.8 5.9E-09 1.3E-13 70.5 4.1 47 230-280 1-48 (49)
42 PF07646 Kelch_2: Kelch motif; 98.8 1.9E-08 4.2E-13 67.8 6.2 44 230-275 1-46 (49)
43 PF07646 Kelch_2: Kelch motif; 98.8 2E-08 4.4E-13 67.7 6.1 45 282-329 1-48 (49)
44 PF03089 RAG2: Recombination a 98.7 5.5E-06 1.2E-10 74.7 21.9 173 242-419 40-240 (337)
45 PF13854 Kelch_5: Kelch motif 98.7 3E-08 6.4E-13 64.1 5.7 40 227-266 1-41 (42)
46 PF13854 Kelch_5: Kelch motif 98.6 4.5E-08 9.7E-13 63.3 4.5 40 504-544 1-41 (42)
47 smart00612 Kelch Kelch domain. 98.6 6.4E-08 1.4E-12 64.8 4.9 46 295-344 1-46 (47)
48 PRK13559 hypothetical protein; 98.6 1E-07 2.2E-12 95.3 7.9 107 2-117 81-187 (361)
49 PF12937 F-box-like: F-box-lik 98.5 8.1E-08 1.8E-12 64.0 2.7 46 135-181 1-46 (47)
50 PF08448 PAS_4: PAS fold; Int 98.5 5.4E-07 1.2E-11 72.8 7.2 80 2-91 30-109 (110)
51 PF03089 RAG2: Recombination a 98.4 7.2E-06 1.6E-10 73.9 13.5 148 384-543 19-190 (337)
52 smart00612 Kelch Kelch domain. 98.4 6E-07 1.3E-11 60.0 4.6 46 242-292 1-46 (47)
53 PF08447 PAS_3: PAS fold; Int 98.3 4.3E-06 9.3E-11 65.0 8.5 61 24-84 30-91 (91)
54 PRK11138 outer membrane biogen 98.3 0.00047 1E-08 69.7 25.5 163 234-434 63-231 (394)
55 PRK13558 bacterio-opsin activa 98.3 1.6E-06 3.4E-11 94.3 7.1 83 2-93 186-268 (665)
56 TIGR02938 nifL_nitrog nitrogen 98.2 1.2E-06 2.6E-11 91.6 5.7 121 2-138 39-165 (494)
57 PRK11138 outer membrane biogen 98.2 0.0011 2.4E-08 67.1 25.8 202 232-498 112-321 (394)
58 PRK09776 putative diguanylate 98.2 1.8E-06 4E-11 99.5 5.5 118 25-150 460-584 (1092)
59 PRK13560 hypothetical protein; 98.1 4.9E-06 1.1E-10 92.8 7.0 127 2-144 239-375 (807)
60 TIGR02040 PpsR-CrtJ transcript 98.1 2.1E-06 4.6E-11 88.3 3.4 143 2-157 31-189 (442)
61 PRK13557 histidine kinase; Pro 98.1 1.3E-05 2.9E-10 84.8 9.1 83 2-93 68-150 (540)
62 TIGR01640 F_box_assoc_1 F-box 98.0 0.002 4.3E-08 59.8 21.6 201 257-489 14-228 (230)
63 PF00646 F-box: F-box domain; 98.0 4E-06 8.6E-11 56.2 2.4 45 135-180 3-47 (48)
64 smart00256 FBOX A Receptor for 98.0 7.7E-06 1.7E-10 52.7 3.7 40 138-178 1-40 (41)
65 TIGR03300 assembly_YfgL outer 98.0 0.0045 9.8E-08 62.2 25.5 159 234-435 59-217 (377)
66 PF07250 Glyoxal_oxid_N: Glyox 97.9 0.0017 3.7E-08 59.5 18.2 151 259-438 48-208 (243)
67 PF07250 Glyoxal_oxid_N: Glyox 97.9 0.00088 1.9E-08 61.4 16.0 153 310-499 47-206 (243)
68 PRK13560 hypothetical protein; 97.9 2E-05 4.3E-10 87.9 6.5 123 22-154 120-256 (807)
69 PF13360 PQQ_2: PQQ-like domai 97.8 0.0073 1.6E-07 56.2 22.7 199 236-497 32-238 (238)
70 PRK09776 putative diguanylate 97.8 1.1E-05 2.4E-10 93.0 4.0 140 2-157 318-466 (1092)
71 KOG0501 K+-channel KCNQ [Inorg 97.7 5.5E-05 1.2E-09 74.8 6.4 83 2-93 55-139 (971)
72 KOG0281 Beta-TrCP (transducin 97.7 0.0012 2.6E-08 61.5 14.5 44 136-180 76-123 (499)
73 PF13360 PQQ_2: PQQ-like domai 97.7 0.017 3.7E-07 53.7 23.3 222 258-544 4-231 (238)
74 PRK11091 aerobic respiration c 97.7 5.7E-05 1.2E-09 83.7 6.3 83 2-93 190-272 (779)
75 TIGR03300 assembly_YfgL outer 97.7 0.026 5.6E-07 56.8 24.9 200 236-498 141-347 (377)
76 PF00989 PAS: PAS fold; Inter 97.7 0.00013 2.7E-09 59.0 6.5 77 2-87 36-113 (113)
77 TIGR01640 F_box_assoc_1 F-box 97.3 0.056 1.2E-06 50.1 20.3 204 309-545 14-230 (230)
78 PRK11359 cyclic-di-GMP phospho 97.2 0.0004 8.6E-09 77.5 5.5 129 2-152 47-186 (799)
79 PRK11359 cyclic-di-GMP phospho 97.0 0.001 2.2E-08 74.2 6.3 65 29-93 190-254 (799)
80 PRK10060 RNase II stability mo 96.9 0.0016 3.4E-08 70.5 6.6 83 2-93 146-229 (663)
81 KOG2997 F-box protein FBX9 [Ge 96.9 0.00076 1.6E-08 62.3 3.4 56 132-188 104-164 (366)
82 cd00216 PQQ_DH Dehydrogenases 96.9 0.52 1.1E-05 49.1 24.6 254 235-523 151-453 (488)
83 cd00216 PQQ_DH Dehydrogenases 96.9 0.5 1.1E-05 49.2 24.3 188 233-435 54-273 (488)
84 TIGR00229 sensory_box PAS doma 96.7 0.0039 8.5E-08 49.1 6.0 64 29-93 56-120 (124)
85 cd00130 PAS PAS domain; PAS mo 96.7 0.015 3.2E-07 43.3 8.9 59 29-87 45-103 (103)
86 PF12768 Rax2: Cortical protei 96.6 0.062 1.3E-06 50.8 13.8 113 255-381 14-130 (281)
87 smart00086 PAC Motif C-termina 96.6 0.012 2.7E-07 35.6 6.6 40 50-89 3-42 (43)
88 PF12768 Rax2: Cortical protei 96.6 0.065 1.4E-06 50.6 13.7 125 296-437 1-130 (281)
89 TIGR02040 PpsR-CrtJ transcript 96.6 0.0082 1.8E-07 61.8 8.6 48 44-93 320-367 (442)
90 PF13596 PAS_10: PAS domain; P 96.5 0.012 2.6E-07 47.0 7.6 69 7-88 38-106 (106)
91 PF14598 PAS_11: PAS domain; P 96.5 0.027 5.8E-07 45.3 9.4 80 2-90 28-109 (111)
92 PRK13684 Ycf48-like protein; P 96.3 1.3 2.8E-05 43.5 27.1 244 216-527 76-322 (334)
93 KOG2120 SCF ubiquitin ligase, 96.2 0.0041 9E-08 57.4 3.3 44 135-179 98-141 (419)
94 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.2 1.9 4E-05 45.3 23.3 127 291-436 67-199 (527)
95 PF07893 DUF1668: Protein of u 96.0 0.26 5.5E-06 48.6 15.2 126 289-438 72-217 (342)
96 COG1520 FOG: WD40-like repeat 95.9 2.2 4.8E-05 42.6 22.2 215 236-499 64-278 (370)
97 PRK13684 Ycf48-like protein; P 95.8 2.1 4.6E-05 42.0 26.7 244 214-527 33-279 (334)
98 PLN00033 photosystem II stabil 95.8 2.5 5.3E-05 42.5 27.7 245 215-525 119-388 (398)
99 PF14870 PSII_BNR: Photosynthe 95.5 2.4 5.2E-05 40.7 24.9 244 216-526 47-294 (302)
100 PF07893 DUF1668: Protein of u 95.4 0.9 2E-05 44.7 16.2 126 239-386 75-221 (342)
101 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.1 5.1 0.00011 42.1 24.3 130 234-380 63-199 (527)
102 KOG2055 WD40 repeat protein [G 95.0 2.3 5.1E-05 41.9 17.0 150 292-491 223-376 (514)
103 PRK11028 6-phosphogluconolacto 94.7 4.6 0.0001 39.5 24.7 150 242-426 3-156 (330)
104 PRK11360 sensory histidine kin 94.5 0.11 2.4E-06 55.6 8.0 79 3-93 298-377 (607)
105 KOG0310 Conserved WD40 repeat- 94.3 6.3 0.00014 39.3 18.2 218 238-529 77-301 (487)
106 KOG3926 F-box proteins [Amino 94.2 0.033 7.1E-07 50.4 2.4 78 131-209 198-276 (332)
107 PF14870 PSII_BNR: Photosynthe 94.2 5.6 0.00012 38.2 20.9 196 270-525 7-204 (302)
108 PF10282 Lactonase: Lactonase, 94.0 6.9 0.00015 38.7 21.8 240 257-542 13-274 (345)
109 PF08450 SGL: SMP-30/Gluconola 93.7 5.8 0.00013 36.9 22.7 203 240-499 11-221 (246)
110 KOG2055 WD40 repeat protein [G 92.9 6.8 0.00015 38.9 15.7 149 240-426 224-374 (514)
111 PF02191 OLF: Olfactomedin-lik 92.2 10 0.00022 35.4 16.5 193 293-524 30-236 (250)
112 PF13088 BNR_2: BNR repeat-lik 91.9 4.3 9.4E-05 38.5 13.6 230 215-469 29-275 (275)
113 cd00094 HX Hemopexin-like repe 91.9 9 0.0002 34.2 18.2 151 235-426 11-175 (194)
114 PRK05137 tolB translocation pr 91.7 18 0.00038 37.1 25.4 150 256-436 181-330 (435)
115 PF12860 PAS_7: PAS fold 91.1 0.73 1.6E-05 37.1 6.3 53 32-93 61-113 (115)
116 KOG1229 3'5'-cyclic nucleotide 90.7 0.18 3.9E-06 48.9 2.7 71 5-83 195-265 (775)
117 PRK11073 glnL nitrogen regulat 90.3 0.55 1.2E-05 46.4 5.9 76 2-93 42-117 (348)
118 PRK11028 6-phosphogluconolacto 90.2 19 0.00042 35.1 25.0 111 240-371 46-157 (330)
119 cd00094 HX Hemopexin-like repe 90.0 14 0.0003 33.0 17.8 152 294-489 17-175 (194)
120 PLN00033 photosystem II stabil 89.6 25 0.00053 35.4 28.2 137 214-379 73-214 (398)
121 TIGR02966 phoR_proteo phosphat 89.2 0.33 7.1E-06 47.4 3.2 38 51-93 73-110 (333)
122 PF10282 Lactonase: Lactonase, 88.5 27 0.00058 34.5 23.9 223 240-498 48-284 (345)
123 COG1520 FOG: WD40-like repeat 88.5 28 0.00062 34.7 21.8 218 240-499 111-332 (370)
124 KOG0274 Cdc4 and related F-box 87.8 39 0.00085 35.6 24.0 47 135-182 108-154 (537)
125 PF02897 Peptidase_S9_N: Proly 87.4 31 0.00067 35.0 16.5 237 258-544 151-405 (414)
126 PF13088 BNR_2: BNR repeat-lik 87.4 26 0.00057 33.0 15.7 232 267-523 28-275 (275)
127 PRK04922 tolB translocation pr 86.6 41 0.00088 34.4 24.8 147 309-499 228-376 (433)
128 TIGR03866 PQQ_ABC_repeats PQQ- 86.3 30 0.00065 32.7 25.8 141 242-426 2-145 (300)
129 PRK04043 tolB translocation pr 86.3 41 0.0009 34.2 20.5 150 309-500 213-366 (419)
130 PF07310 PAS_5: PAS domain; I 86.2 2.1 4.6E-05 35.7 6.0 56 29-84 81-136 (137)
131 PRK00178 tolB translocation pr 85.3 47 0.001 33.9 26.0 162 292-499 209-371 (430)
132 TIGR02800 propeller_TolB tol-p 84.9 47 0.001 33.6 25.0 149 309-499 214-362 (417)
133 COG2461 Uncharacterized conser 84.8 1.3 2.9E-05 42.9 4.4 74 7-93 328-401 (409)
134 PLN03215 ascorbic acid mannose 84.6 0.76 1.6E-05 45.1 2.8 37 135-172 4-41 (373)
135 TIGR03074 PQQ_membr_DH membran 84.4 71 0.0015 35.3 22.9 188 234-436 188-432 (764)
136 KOG2048 WD40 repeat protein [G 84.4 58 0.0013 34.3 19.4 54 242-304 258-311 (691)
137 TIGR02658 TTQ_MADH_Hv methylam 84.3 45 0.00097 32.9 24.4 114 241-370 13-136 (352)
138 KOG4649 PQQ (pyrrolo-quinoline 81.4 45 0.00099 30.9 12.6 116 340-497 16-131 (354)
139 PRK04792 tolB translocation pr 81.1 71 0.0015 32.9 24.1 148 309-499 242-390 (448)
140 KOG2048 WD40 repeat protein [G 81.0 36 0.00079 35.7 12.9 131 277-436 422-559 (691)
141 TIGR03866 PQQ_ABC_repeats PQQ- 80.8 51 0.0011 31.1 24.0 61 241-319 43-105 (300)
142 PRK04792 tolB translocation pr 80.2 76 0.0016 32.7 20.9 187 307-544 196-383 (448)
143 PRK05137 tolB translocation pr 79.8 76 0.0016 32.5 24.6 195 257-499 226-420 (435)
144 PF08348 PAS_6: YheO-like PAS 79.7 2.1 4.5E-05 34.7 3.2 44 46-91 67-110 (118)
145 COG5002 VicK Signal transducti 78.5 3.9 8.5E-05 39.2 5.0 58 56-117 184-242 (459)
146 PF12217 End_beta_propel: Cata 78.2 57 0.0012 30.1 19.1 225 233-474 77-334 (367)
147 PF08268 FBA_3: F-box associat 76.6 41 0.00088 27.6 11.6 86 343-438 4-90 (129)
148 PF06433 Me-amine-dh_H: Methyl 76.4 62 0.0013 31.5 12.5 114 241-371 3-127 (342)
149 PF09884 DUF2111: Uncharacteri 76.2 17 0.00036 26.9 6.5 48 36-88 36-83 (84)
150 KOG0310 Conserved WD40 repeat- 75.9 93 0.002 31.4 16.4 179 238-474 120-300 (487)
151 PF02191 OLF: Olfactomedin-lik 75.7 70 0.0015 29.9 15.1 161 228-405 66-237 (250)
152 PF05096 Glu_cyclase_2: Glutam 75.2 64 0.0014 30.2 11.8 104 292-426 54-157 (264)
153 PF08268 FBA_3: F-box associat 74.6 29 0.00064 28.4 8.9 83 238-327 3-88 (129)
154 smart00284 OLF Olfactomedin-li 72.8 83 0.0018 29.4 19.3 192 294-524 35-241 (255)
155 PF08450 SGL: SMP-30/Gluconola 72.7 80 0.0017 29.2 18.3 167 235-436 44-221 (246)
156 PF02239 Cytochrom_D1: Cytochr 71.6 1.1E+02 0.0024 30.5 14.1 180 257-490 16-203 (369)
157 PRK02889 tolB translocation pr 71.5 1.2E+02 0.0027 30.8 23.4 191 257-498 176-367 (427)
158 TIGR02938 nifL_nitrog nitrogen 71.4 0.76 1.7E-05 47.7 -1.7 43 51-93 202-254 (494)
159 PF03178 CPSF_A: CPSF A subuni 71.1 1.1E+02 0.0023 29.8 13.5 105 309-438 62-169 (321)
160 PF12217 End_beta_propel: Cata 70.3 45 0.00097 30.8 9.3 64 236-303 196-259 (367)
161 TIGR02800 propeller_TolB tol-p 69.8 1.3E+02 0.0028 30.4 22.6 149 257-436 214-362 (417)
162 PF03178 CPSF_A: CPSF A subuni 66.6 1.3E+02 0.0028 29.2 13.2 123 362-526 62-190 (321)
163 KOG4649 PQQ (pyrrolo-quinoline 65.5 1.2E+02 0.0026 28.3 12.6 115 288-433 16-130 (354)
164 PRK00178 tolB translocation pr 64.8 1.7E+02 0.0036 29.8 22.3 147 257-436 223-371 (430)
165 PRK03629 tolB translocation pr 63.4 1.8E+02 0.0039 29.7 25.8 228 255-542 177-405 (429)
166 PF08670 MEKHLA: MEKHLA domain 59.8 39 0.00084 28.6 6.6 76 2-86 68-144 (148)
167 KOG3558 Hypoxia-inducible fact 59.1 8.9 0.00019 40.2 3.2 79 2-90 299-379 (768)
168 PF02239 Cytochrom_D1: Cytochr 56.7 1.2E+02 0.0025 30.4 10.6 139 309-489 16-158 (369)
169 PLN03215 ascorbic acid mannose 56.1 2.2E+02 0.0048 28.4 14.3 99 322-438 191-304 (373)
170 cd00200 WD40 WD40 domain, foun 55.0 1.7E+02 0.0036 26.6 23.6 63 241-319 21-83 (289)
171 KOG1645 RING-finger-containing 54.8 1.7E+02 0.0037 29.1 10.6 53 309-372 216-268 (463)
172 PRK11086 sensory histidine kin 53.8 13 0.00027 39.3 3.6 52 37-93 278-329 (542)
173 PRK04043 tolB translocation pr 53.4 2.6E+02 0.0057 28.5 22.8 187 258-489 214-400 (419)
174 PRK04922 tolB translocation pr 53.1 2.7E+02 0.0058 28.5 23.0 183 257-489 228-411 (433)
175 KOG2321 WD40 repeat protein [G 52.4 1.4E+02 0.0031 31.1 10.1 72 230-319 133-207 (703)
176 KOG2321 WD40 repeat protein [G 52.0 1.6E+02 0.0034 30.7 10.3 72 387-489 133-205 (703)
177 COG2706 3-carboxymuconate cycl 51.3 2.4E+02 0.0053 27.5 23.7 240 256-543 15-274 (346)
178 PF14583 Pectate_lyase22: Olig 51.2 2.7E+02 0.0057 27.9 18.1 150 363-544 217-384 (386)
179 COG4880 Secreted protein conta 51.2 2.3E+02 0.0051 28.4 11.0 165 302-498 399-597 (603)
180 PF15525 DUF4652: Domain of un 51.0 1.7E+02 0.0038 25.7 10.8 70 253-329 84-158 (200)
181 PF02897 Peptidase_S9_N: Proly 49.9 2.9E+02 0.0062 27.9 16.1 160 308-498 149-319 (414)
182 PF05096 Glu_cyclase_2: Glutam 49.1 2.3E+02 0.005 26.6 13.0 104 344-489 54-157 (264)
183 PTZ00421 coronin; Provisional 48.1 3.5E+02 0.0075 28.3 21.1 60 347-426 139-198 (493)
184 PF13013 F-box-like_2: F-box-l 47.7 30 0.00065 27.5 3.8 36 129-165 16-51 (109)
185 PF06433 Me-amine-dh_H: Methyl 46.5 2.9E+02 0.0064 27.0 13.1 29 398-426 249-277 (342)
186 KOG0649 WD40 repeat protein [G 46.5 2.4E+02 0.0052 26.0 16.2 91 322-435 100-193 (325)
187 smart00284 OLF Olfactomedin-li 43.1 2.9E+02 0.0062 25.9 17.6 160 227-404 70-241 (255)
188 COG2202 AtoS FOG: PAS/PAC doma 42.5 90 0.002 26.2 6.9 47 45-92 183-230 (232)
189 PF13570 PQQ_3: PQQ-like domai 42.0 50 0.0011 20.3 3.6 26 234-266 15-40 (40)
190 cd00200 WD40 WD40 domain, foun 41.3 2.7E+02 0.0059 25.1 23.6 63 241-319 63-125 (289)
191 PLN00181 protein SPA1-RELATED; 41.2 5.6E+02 0.012 28.7 23.7 60 294-371 588-649 (793)
192 TIGR03074 PQQ_membr_DH membran 40.5 5.6E+02 0.012 28.5 27.0 190 292-500 193-433 (764)
193 KOG0772 Uncharacterized conser 40.2 4.4E+02 0.0096 27.3 19.2 208 292-541 225-443 (641)
194 PRK03629 tolB translocation pr 39.4 4.3E+02 0.0093 26.9 21.2 160 295-498 166-326 (429)
195 KOG0289 mRNA splicing factor [ 39.3 4.2E+02 0.0091 26.7 16.4 102 310-438 370-472 (506)
196 PF00989 PAS: PAS fold; Inter 36.5 6.1 0.00013 30.9 -1.7 48 109-156 1-55 (113)
197 KOG3881 Uncharacterized conser 34.5 4.7E+02 0.01 25.9 11.4 152 242-426 162-320 (412)
198 PF06881 Elongin_A: RNA polyme 34.5 49 0.0011 26.2 3.3 69 134-209 3-71 (109)
199 PTZ00420 coronin; Provisional 34.1 6.1E+02 0.013 27.1 19.2 60 295-371 139-198 (568)
200 COG5184 ATS1 Alpha-tubulin sup 33.9 5.4E+02 0.012 26.4 12.7 19 509-527 293-311 (476)
201 COG3829 RocR Transcriptional r 33.5 11 0.00023 38.9 -0.8 72 67-145 81-160 (560)
202 KOG0293 WD40 repeat-containing 32.9 5.2E+02 0.011 25.9 12.7 133 310-489 292-425 (519)
203 PF14583 Pectate_lyase22: Olig 31.2 5.5E+02 0.012 25.7 12.1 163 292-489 46-224 (386)
204 KOG0646 WD40 repeat protein [G 31.2 5.8E+02 0.013 26.0 13.6 22 517-544 287-308 (476)
205 PF14830 Haemocyan_bet_s: Haem 31.2 40 0.00086 26.4 2.1 27 518-544 36-62 (103)
206 PLN00181 protein SPA1-RELATED; 30.2 8.2E+02 0.018 27.4 21.1 99 295-426 546-648 (793)
207 PF14827 Cache_3: Sensory doma 29.6 1.1E+02 0.0024 24.5 4.6 45 37-87 69-113 (116)
208 PLN02919 haloacid dehalogenase 29.4 9.7E+02 0.021 28.0 28.0 80 392-490 808-889 (1057)
209 KOG0291 WD40-repeat-containing 28.9 8E+02 0.017 26.9 20.9 106 292-426 360-466 (893)
210 PTZ00421 coronin; Provisional 28.6 7E+02 0.015 26.1 19.7 61 295-372 139-200 (493)
211 PF11768 DUF3312: Protein of u 28.1 4.3E+02 0.0092 27.7 9.3 120 241-381 219-340 (545)
212 KOG4378 Nuclear protein COP1 [ 27.8 6.9E+02 0.015 25.8 13.0 50 363-426 188-239 (673)
213 smart00564 PQQ beta-propeller 27.1 1.3E+02 0.0028 17.2 4.0 15 258-272 17-31 (33)
214 PF09910 DUF2139: Uncharacteri 26.9 5.8E+02 0.012 24.5 11.0 113 239-367 116-237 (339)
215 PF13540 RCC1_2: Regulator of 26.0 1.1E+02 0.0023 17.6 2.9 18 284-301 8-25 (30)
216 KOG2111 Uncharacterized conser 25.9 6.1E+02 0.013 24.5 9.6 111 399-545 59-169 (346)
217 PRK10060 RNase II stability mo 25.6 24 0.00052 38.4 0.2 86 54-151 68-160 (663)
218 PRK10820 DNA-binding transcrip 25.4 1.1E+02 0.0023 32.4 4.8 35 54-90 150-188 (520)
219 PRK11006 phoR phosphate regulo 25.4 72 0.0016 32.5 3.6 53 54-117 168-221 (430)
220 TIGR02658 TTQ_MADH_Hv methylam 25.2 6.8E+02 0.015 24.8 22.0 70 397-490 258-331 (352)
221 PF14830 Haemocyan_bet_s: Haem 24.6 72 0.0016 25.0 2.5 28 238-265 34-61 (103)
222 PRK01742 tolB translocation pr 22.9 8.1E+02 0.018 24.9 19.7 61 309-380 228-288 (429)
223 PRK11006 phoR phosphate regulo 22.3 1 2.2E-05 46.2 -10.8 90 54-150 50-146 (430)
224 PRK02889 tolB translocation pr 21.3 8.7E+02 0.019 24.6 23.5 183 257-489 220-403 (427)
225 KOG0647 mRNA export protein (c 21.2 7.4E+02 0.016 23.8 10.5 137 241-409 84-220 (347)
226 smart00155 PLDc Phospholipase 21.2 1.7E+02 0.0037 16.3 3.2 20 455-474 4-23 (28)
227 KOG3560 Aryl-hydrocarbon recep 21.1 1.9E+02 0.0041 29.9 5.2 64 25-89 322-385 (712)
228 PF05262 Borrelia_P83: Borreli 21.1 5.3E+02 0.011 26.8 8.5 88 356-470 369-456 (489)
229 PRK11388 DNA-binding transcrip 20.9 43 0.00093 36.3 0.9 86 63-152 143-253 (638)
230 COG4447 Uncharacterized protei 20.1 7.6E+02 0.017 23.5 8.4 157 269-471 32-188 (339)
No 1
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=5.5e-42 Score=337.86 Aligned_cols=308 Identities=25% Similarity=0.391 Sum_probs=236.9
Q ss_pred ccCCcEEeccC-CCCCCCCCceeeEEECCEEEEEcCCCCC-CCccCceEEEeCCCCCCceEEeccCC-CCCC-ccceeEE
Q 042793 214 EAATWRKLTVG-GTVEPSRCNFSACAVGNRVVLFGGEGVN-MQPMNDTFVLDLNSSNPEWQHVHVSS-PPPG-RWGHTLS 289 (545)
Q Consensus 214 ~~~~W~~~~~~-~~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~~d~~t~~~~W~~~~~~~-~~~~-r~~~~~~ 289 (545)
....|..++.. +..|.+|.+|++++++++|||+||.... ....+++|+||+.++ +|+.++... .|.. +.+|+++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~p~~~~~~~~~~ 82 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTH--TWSIAPANGDVPRISCLGVRMV 82 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCC--EEEEcCccCCCCCCccCceEEE
Confidence 45679988653 4578899999999999999999998543 334689999999998 999876321 2322 3467777
Q ss_pred EEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCC---CCCCCccceEEEEcCCEEEEEcCCCCCC-----Ccc
Q 042793 290 CVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLA---PPLPRSWHSSCTLDGTKLIVSGGCADSG-----VLL 361 (545)
Q Consensus 290 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~---~~~~r~~~~~~~~~~~~iyv~GG~~~~~-----~~~ 361 (545)
++ +++||||||......++++++||+.++ +|+.++++. .|.+|..|++++. +++|||+||.+..+ ..+
T Consensus 83 ~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 83 AV-GTKLYIFGGRDEKREFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTFHSMASD-ENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EE-CCEEEEECCCCCCCccCcEEEEECCCC--EEEEeccCCCCCCCCCceeeEEEEE-CCEEEEECCccCCCccCCCccc
Confidence 77 459999999887767889999999999 999987652 3788999998887 45999999986432 245
Q ss_pred CcEEEEecCCCCCceEEecCCC-CCCCCCCcEEEEECCcEEEEEcccCCC----CCCccccCcEEEEeCCCCCCceEEee
Q 042793 362 SDTFLLDLSMEKPVWREIPVTW-TPPSRLGHTLSVYGGRKILMFGGLAKS----GPLRFRSSDVFTMDLSEEEPCWRCVT 436 (545)
Q Consensus 362 ~~~~~~d~~~~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~lyi~GG~~~~----~~~~~~~~~i~~~d~~~~~~~W~~v~ 436 (545)
+++++||+. +++|+.++... .|.+|.+|+++++++ +||++||.... +......++++.||+. +++|+++.
T Consensus 159 ~~v~~yd~~--~~~W~~l~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~--~~~W~~~~ 233 (341)
T PLN02153 159 RTIEAYNIA--DGKWVQLPDPGENFEKRGGAGFAVVQG-KIWVVYGFATSILPGGKSDYESNAVQFFDPA--SGKWTEVE 233 (341)
T ss_pred ceEEEEECC--CCeEeeCCCCCCCCCCCCcceEEEECC-eEEEEeccccccccCCccceecCceEEEEcC--CCcEEecc
Confidence 789999954 66999987632 457899999998987 99999987531 1111125789999999 89999997
Q ss_pred cCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCC--------CCCCCCceEEEcCCCCCCceEEeccCCCC--CC
Q 042793 437 GSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVA--------GLHSATQLYLLDPTEEKPTWRILNVPGRP--PR 506 (545)
Q Consensus 437 ~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~~~v~~~d~~~~~~~W~~~~~~~~~--p~ 506 (545)
.. +..|.+|..|+++++ +++||||||... .....+++|+||++ +.+|+.+...+.+ |.
T Consensus 234 ~~---------g~~P~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~--~~~W~~~~~~~~~~~pr 301 (341)
T PLN02153 234 TT---------GAKPSARSVFAHAVV-GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE--TLVWEKLGECGEPAMPR 301 (341)
T ss_pred cc---------CCCCCCcceeeeEEE-CCEEEEECcccCCccccccccccccccEEEEEcC--ccEEEeccCCCCCCCCC
Confidence 65 556889998888877 899999999642 22346799999996 7899999754443 44
Q ss_pred CCCCceeEEeC-CeeEEEEcCCCCcccccccceeeeecc
Q 042793 507 FAWGHSTCVVG-GTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 507 ~r~~~~~~~~~-~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
.+..++++.+. +++||||||.+...+.++|+|+|++.+
T Consensus 302 ~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~~ 340 (341)
T PLN02153 302 GWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVNS 340 (341)
T ss_pred ccccccccccCCcceEEEEcCcCCCCccccceEEEeccc
Confidence 45544555544 468999999988767889999999865
No 2
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.6e-41 Score=344.68 Aligned_cols=300 Identities=24% Similarity=0.388 Sum_probs=241.8
Q ss_pred CCcEEeccCCCCCCCCCceeeEEECCEEEEEcCCCCCCC-ccCceEEEeCCCCCCceEEeccC-CCCC-CccceeEEEEc
Q 042793 216 ATWRKLTVGGTVEPSRCNFSACAVGNRVVLFGGEGVNMQ-PMNDTFVLDLNSSNPEWQHVHVS-SPPP-GRWGHTLSCVN 292 (545)
Q Consensus 216 ~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~-~~~~~~~~d~~t~~~~W~~~~~~-~~~~-~r~~~~~~~~~ 292 (545)
++|..+++.+..|.+|.+|++++++++|||+||...... ..+++|+||+.++ +|+.++.. .+|. +|.+|+++++
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~--~W~~~~~~g~~P~~~~~~~~~v~~- 227 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETR--TWSISPATGDVPHLSCLGVRMVSI- 227 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCC--EEEeCCCCCCCCCCcccceEEEEE-
Confidence 799999877778899999999999999999999754333 4578999999998 99987543 2444 3567887777
Q ss_pred CCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCC-CCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCC
Q 042793 293 GSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGL-APPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSM 371 (545)
Q Consensus 293 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~-~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 371 (545)
+++||||||......++++|+||+.++ +|++++++ ..|.+|+.|++++. +++|||+||.+. ...+++++.||+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~--~W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~-~~~~~~~~~yd~~- 302 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTN--EWKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSA-TARLKTLDSYNIV- 302 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCC--EEEEcCcCCCCCCCccceEEEEE-CCEEEEECCCCC-CCCcceEEEEECC-
Confidence 559999999987777899999999999 99999876 33789999998887 559999999854 3457889999955
Q ss_pred CCCceEEecCC-CCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCC
Q 042793 372 EKPVWREIPVT-WTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIA 450 (545)
Q Consensus 372 ~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~ 450 (545)
+++|+.++.. .+|.+|.+|+++++++ ++|++||..+.. .+++++||+. +++|+++..+ +..
T Consensus 303 -t~~W~~~~~~~~~~~~R~~~~~~~~~g-kiyviGG~~g~~-----~~dv~~yD~~--t~~W~~~~~~---------g~~ 364 (470)
T PLN02193 303 -DKKWFHCSTPGDSFSIRGGAGLEVVQG-KVWVVYGFNGCE-----VDDVHYYDPV--QDKWTQVETF---------GVR 364 (470)
T ss_pred -CCEEEeCCCCCCCCCCCCCcEEEEECC-cEEEEECCCCCc-----cCceEEEECC--CCEEEEeccC---------CCC
Confidence 6699988752 3677899999999987 999999975432 5899999999 8999999766 557
Q ss_pred CCCCcceEEEEecCCEEEEEcCcCCC--------CCCCCceEEEcCCCCCCceEEeccCC---CCCCCCCCceeE--EeC
Q 042793 451 PPPRLDHVAVSLPGGRILIFGGSVAG--------LHSATQLYLLDPTEEKPTWRILNVPG---RPPRFAWGHSTC--VVG 517 (545)
Q Consensus 451 p~~r~~~~~~~~~~~~l~v~GG~~~~--------~~~~~~v~~~d~~~~~~~W~~~~~~~---~~p~~r~~~~~~--~~~ 517 (545)
|.+|..|+++++ +++|||+||.... ....+++|+||+. +++|+.+...+ ..|.+|..|+++ .+.
T Consensus 365 P~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~--t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~ 441 (470)
T PLN02193 365 PSERSVFASAAV-GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE--TLQWERLDKFGEEEETPSSRGWTASTTGTID 441 (470)
T ss_pred CCCcceeEEEEE-CCEEEEECCccCCccccccCccceeccEEEEEcC--cCEEEEcccCCCCCCCCCCCccccceeeEEc
Confidence 889999888877 8999999997531 2345789999996 78999997644 367777766432 232
Q ss_pred -CeeEEEEcCCCCcccccccceeeeecc
Q 042793 518 -GTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 518 -~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
++.|++|||.+..+.+++|+|+|++++
T Consensus 442 ~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 442 GKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred CCceEEEEcCCCCccccccceEEEecCC
Confidence 456999999987777899999999875
No 3
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=282.54 Aligned_cols=278 Identities=27% Similarity=0.505 Sum_probs=228.9
Q ss_pred CCCCCceeeEEECCEEEEEcCCCCCCC--c--cCceEEEeCCCCCCceEEeccC-----------CCCCCccceeEEEEc
Q 042793 228 EPSRCNFSACAVGNRVVLFGGEGVNMQ--P--MNDTFVLDLNSSNPEWQHVHVS-----------SPPPGRWGHTLSCVN 292 (545)
Q Consensus 228 p~~r~~~~~~~~~~~lyv~GG~~~~~~--~--~~~~~~~d~~t~~~~W~~~~~~-----------~~~~~r~~~~~~~~~ 292 (545)
.|.|..|+++.+++.||-|||+..... . -=|++++|..+. +|.+++.. -.|..|++|+.+.++
T Consensus 11 GPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~--RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~ 88 (392)
T KOG4693|consen 11 GPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENY--RWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ 88 (392)
T ss_pred CcccccceeeeecceEEecCCcccccccccCCcceeEEeeccce--eEEecCcccccccccCCCCccchhhcCceEEEEc
Confidence 467999999999999999999654322 1 237899998887 99988641 146679999999886
Q ss_pred CCEEEEEcCCCC-CcccCcEEEEecCCCCCceEecc-CCCCCCCCccceEEEEcCCEEEEEcCCCCC-CCccCcEEEEec
Q 042793 293 GSHLVVFGGCGR-QGLLNDVFVLDLDAKPPTWREIS-GLAPPLPRSWHSSCTLDGTKLIVSGGCADS-GVLLSDTFLLDL 369 (545)
Q Consensus 293 ~~~iyv~GG~~~-~~~~~~~~~yd~~t~~~~W~~~~-~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~d~ 369 (545)
+ ++||.||.++ .+..|-+++||++|+ .|.+.. ..-.|.+|.+|++|++ |+.+|||||+.++ ....++++++|+
T Consensus 89 d-~~yvWGGRND~egaCN~Ly~fDp~t~--~W~~p~v~G~vPgaRDGHsAcV~-gn~MyiFGGye~~a~~FS~d~h~ld~ 164 (392)
T KOG4693|consen 89 D-KAYVWGGRNDDEGACNLLYEFDPETN--VWKKPEVEGFVPGARDGHSACVW-GNQMYIFGGYEEDAQRFSQDTHVLDF 164 (392)
T ss_pred c-eEEEEcCccCcccccceeeeeccccc--cccccceeeecCCccCCceeeEE-CcEEEEecChHHHHHhhhccceeEec
Confidence 5 8999999987 457899999999999 999654 2235889999999999 6699999998653 456789999995
Q ss_pred CCCCCceEEecCCCCCC-CCCCcEEEEECCcEEEEEcccCCCCC-----CccccCcEEEEeCCCCCCceEEeecCCCCCC
Q 042793 370 SMEKPVWREIPVTWTPP-SRLGHTLSVYGGRKILMFGGLAKSGP-----LRFRSSDVFTMDLSEEEPCWRCVTGSGMPGA 443 (545)
Q Consensus 370 ~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~lyi~GG~~~~~~-----~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~ 443 (545)
. +.+|+.+.+.+.|+ -|-.|+++++++ .+|||||..+... ..++.+.|..+|+. +..|...+..
T Consensus 165 ~--TmtWr~~~Tkg~PprwRDFH~a~~~~~-~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~--T~aW~r~p~~----- 234 (392)
T KOG4693|consen 165 A--TMTWREMHTKGDPPRWRDFHTASVIDG-MMYIFGGRSDESGPFHSIHEQYCDTIMALDLA--TGAWTRTPEN----- 234 (392)
T ss_pred c--ceeeeehhccCCCchhhhhhhhhhccc-eEEEeccccccCCCccchhhhhcceeEEEecc--ccccccCCCC-----
Confidence 5 77999998755544 478899999987 9999999875322 13457889999999 8899988665
Q ss_pred CCCCCCCCCCCcceEEEEecCCEEEEEcCcCCC-CCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEE
Q 042793 444 GNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAG-LHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTI 522 (545)
Q Consensus 444 ~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~-~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~ 522 (545)
+..|..|.+|++.+. ++++|+|||+++- +..++++|+||+. +..|+.+.+.|..|.+|..+|+++. ++++|
T Consensus 235 ----~~~P~GRRSHS~fvY-ng~~Y~FGGYng~ln~HfndLy~FdP~--t~~W~~I~~~Gk~P~aRRRqC~~v~-g~kv~ 306 (392)
T KOG4693|consen 235 ----TMKPGGRRSHSTFVY-NGKMYMFGGYNGTLNVHFNDLYCFDPK--TSMWSVISVRGKYPSARRRQCSVVS-GGKVY 306 (392)
T ss_pred ----CcCCCcccccceEEE-cceEEEecccchhhhhhhcceeecccc--cchheeeeccCCCCCcccceeEEEE-CCEEE
Confidence 567999999999998 9999999998753 2357999999997 7899999999999999999999998 89999
Q ss_pred EEcCCCC
Q 042793 523 VLGGQTG 529 (545)
Q Consensus 523 i~GG~~~ 529 (545)
+|||.++
T Consensus 307 LFGGTsP 313 (392)
T KOG4693|consen 307 LFGGTSP 313 (392)
T ss_pred EecCCCC
Confidence 9999764
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.4e-37 Score=317.62 Aligned_cols=265 Identities=24% Similarity=0.379 Sum_probs=227.2
Q ss_pred hhhhhcccCCcEEeccCCCCCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCcccee
Q 042793 208 RELTTLEAATWRKLTVGGTVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHT 287 (545)
Q Consensus 208 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~ 287 (545)
.+.||+.++.|..++. +|.+|..+++++++++||++||.+.+...++.+++||+.++ +|+.++ +|+.+|.+|+
T Consensus 303 ve~yd~~~~~w~~~a~---m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~--~W~~~a--~M~~~R~~~~ 375 (571)
T KOG4441|consen 303 VECYDPKTNEWSSLAP---MPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTN--QWTPVA--PMNTKRSDFG 375 (571)
T ss_pred eEEecCCcCcEeecCC---CCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCC--ceeccC--CccCccccce
Confidence 3579999999999975 78899999999999999999998755568899999999999 999866 9999999999
Q ss_pred EEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEE
Q 042793 288 LSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLL 367 (545)
Q Consensus 288 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 367 (545)
+++++| +||++||.++...++++++|||.++ +|+.+++| +.+|++|++++++| +||++||.+....+++++++|
T Consensus 376 v~~l~g-~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m--~~~r~~~gv~~~~g-~iYi~GG~~~~~~~l~sve~Y 449 (571)
T KOG4441|consen 376 VAVLDG-KLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPM--LTRRSGHGVAVLGG-KLYIIGGGDGSSNCLNSVECY 449 (571)
T ss_pred eEEECC-EEEEEeccccccccccEEEecCCCC--cccccCCC--CcceeeeEEEEECC-EEEEEcCcCCCccccceEEEE
Confidence 999965 9999999998889999999999999 99999999 77999999999965 999999987666689999999
Q ss_pred ecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCC
Q 042793 368 DLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPG 447 (545)
Q Consensus 368 d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~ 447 (545)
| +.+++|+.+++ |+.+|.+++++++++ +||++||.++... ...+..||+. +++|+.+..+
T Consensus 450 D--P~t~~W~~~~~--M~~~R~~~g~a~~~~-~iYvvGG~~~~~~----~~~VE~ydp~--~~~W~~v~~m--------- 509 (571)
T KOG4441|consen 450 D--PETNTWTLIAP--MNTRRSGFGVAVLNG-KIYVVGGFDGTSA----LSSVERYDPE--TNQWTMVAPM--------- 509 (571)
T ss_pred c--CCCCceeecCC--cccccccceEEEECC-EEEEECCccCCCc----cceEEEEcCC--CCceeEcccC---------
Confidence 9 55779999987 999999999999998 9999999988333 4669999999 8999999766
Q ss_pred CCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEE
Q 042793 448 GIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCV 515 (545)
Q Consensus 448 g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~ 515 (545)
+.+|..+..++. ++++|++||.++ ....+.+.+||+. +++|+.+. .+...+.+.++++
T Consensus 510 ---~~~rs~~g~~~~-~~~ly~vGG~~~-~~~l~~ve~ydp~--~d~W~~~~---~~~~~~~~~~~~~ 567 (571)
T KOG4441|consen 510 ---TSPRSAVGVVVL-GGKLYAVGGFDG-NNNLNTVECYDPE--TDTWTEVT---EPESGRGGAGVAV 567 (571)
T ss_pred ---ccccccccEEEE-CCEEEEEecccC-ccccceeEEcCCC--CCceeeCC---CccccccCcceEE
Confidence 566665555555 999999999764 4467899999996 78999994 4444444444443
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1e-36 Score=314.07 Aligned_cols=285 Identities=22% Similarity=0.337 Sum_probs=239.1
Q ss_pred CcEEeccCCC-CCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCE
Q 042793 217 TWRKLTVGGT-VEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSH 295 (545)
Q Consensus 217 ~W~~~~~~~~-~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~ 295 (545)
+|+.++...+ .+.+|..... ...+.||++||.......++.+.+||+.++ +|..+. +||.+|..++++++++ +
T Consensus 261 ~~~~~~~~~~~~~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~--~w~~~a--~m~~~r~~~~~~~~~~-~ 334 (571)
T KOG4441|consen 261 KYHLLPQRRPVMQSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDPKTN--EWSSLA--PMPSPRCRVGVAVLNG-K 334 (571)
T ss_pred HHhhCcccCccccCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecCCcC--cEeecC--CCCcccccccEEEECC-E
Confidence 4555543221 3444443332 556889999998765678889999999998 999776 8999999999888855 9
Q ss_pred EEEEcCCC-CCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCC
Q 042793 296 LVVFGGCG-RQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKP 374 (545)
Q Consensus 296 iyv~GG~~-~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~ 374 (545)
||++||.+ +...++++|+||+.++ +|+.+++| +.+|..+++++++| +||++||.+ +...++++++|| +.++
T Consensus 335 lYv~GG~~~~~~~l~~ve~YD~~~~--~W~~~a~M--~~~R~~~~v~~l~g-~iYavGG~d-g~~~l~svE~YD--p~~~ 406 (571)
T KOG4441|consen 335 LYVVGGYDSGSDRLSSVERYDPRTN--QWTPVAPM--NTKRSDFGVAVLDG-KLYAVGGFD-GEKSLNSVECYD--PVTN 406 (571)
T ss_pred EEEEccccCCCcccceEEEecCCCC--ceeccCCc--cCccccceeEEECC-EEEEEeccc-cccccccEEEec--CCCC
Confidence 99999999 6778999999999999 99999999 89999999999955 999999986 566788999999 5577
Q ss_pred ceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCC
Q 042793 375 VWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPR 454 (545)
Q Consensus 375 ~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r 454 (545)
+|+.+.+ ++.+|.+|+++++++ +||++||..+... ..+.+..|||. +++|+.++++ +.+|
T Consensus 407 ~W~~va~--m~~~r~~~gv~~~~g-~iYi~GG~~~~~~---~l~sve~YDP~--t~~W~~~~~M------------~~~R 466 (571)
T KOG4441|consen 407 KWTPVAP--MLTRRSGHGVAVLGG-KLYIIGGGDGSSN---CLNSVECYDPE--TNTWTLIAPM------------NTRR 466 (571)
T ss_pred cccccCC--CCcceeeeEEEEECC-EEEEEcCcCCCcc---ccceEEEEcCC--CCceeecCCc------------cccc
Confidence 9999986 888999999999998 9999999887663 36899999999 8999999988 7888
Q ss_pred cceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCccccc
Q 042793 455 LDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWML 534 (545)
Q Consensus 455 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~ 534 (545)
.++.++++ +++||++||.+. ......+.+||+. +++|+.+ ..++.+|..+.++++ ++++|++||+++.. ++
T Consensus 467 ~~~g~a~~-~~~iYvvGG~~~-~~~~~~VE~ydp~--~~~W~~v---~~m~~~rs~~g~~~~-~~~ly~vGG~~~~~-~l 537 (571)
T KOG4441|consen 467 SGFGVAVL-NGKIYVVGGFDG-TSALSSVERYDPE--TNQWTMV---APMTSPRSAVGVVVL-GGKLYAVGGFDGNN-NL 537 (571)
T ss_pred ccceEEEE-CCEEEEECCccC-CCccceEEEEcCC--CCceeEc---ccCccccccccEEEE-CCEEEEEecccCcc-cc
Confidence 88876666 999999999886 4456779999996 7899999 567888888888777 89999999988765 58
Q ss_pred ccceeeeecc
Q 042793 535 SELHELSLVS 544 (545)
Q Consensus 535 ~~~~~l~l~~ 544 (545)
+.+.+||...
T Consensus 538 ~~ve~ydp~~ 547 (571)
T KOG4441|consen 538 NTVECYDPET 547 (571)
T ss_pred ceeEEcCCCC
Confidence 9999998764
No 6
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=3.3e-36 Score=298.06 Aligned_cols=279 Identities=20% Similarity=0.331 Sum_probs=211.2
Q ss_pred CCCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCC-CCccceeEEEEcCCEEEEEcCCCC
Q 042793 226 TVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPP-PGRWGHTLSCVNGSHLVVFGGCGR 304 (545)
Q Consensus 226 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~-~~r~~~~~~~~~~~~iyv~GG~~~ 304 (545)
++|.+|..+++++++++|||+||... +++++||+....++|..++ +|| .+|..|++++++ ++|||+||+..
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l~--~~p~~~R~~~~~~~~~-~~iYv~GG~~~ 74 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKIA--DFPGGPRNQAVAAAID-GKLYVFGGIGK 74 (346)
T ss_pred CCCccccCceEEEECCEEEEEccccC-----CeeEEEECCCCCCCceECC--CCCCCCcccceEEEEC-CEEEEEeCCCC
Confidence 46778888888899999999999632 5799999754334899876 787 589999888775 59999999864
Q ss_pred Cc------ccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCC--------------------
Q 042793 305 QG------LLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSG-------------------- 358 (545)
Q Consensus 305 ~~------~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~-------------------- 358 (545)
.. .++++|+||+.++ +|+.++. ..|.+|.+|+++...+++||++||.+...
T Consensus 75 ~~~~~~~~~~~~v~~Yd~~~~--~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (346)
T TIGR03547 75 ANSEGSPQVFDDVYRYDPKKN--SWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDK 151 (346)
T ss_pred CCCCCcceecccEEEEECCCC--EEecCCC-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhh
Confidence 21 4789999999999 9999974 23677777777633366999999975310
Q ss_pred -------------CccCcEEEEecCCCCCceEEecCCCCCC-CCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEe
Q 042793 359 -------------VLLSDTFLLDLSMEKPVWREIPVTWTPP-SRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMD 424 (545)
Q Consensus 359 -------------~~~~~~~~~d~~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d 424 (545)
...+++++|| +.+++|+.+.. +|. +|.+++++.+++ +||++||...... ...+++.|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~v~~YD--p~t~~W~~~~~--~p~~~r~~~~~~~~~~-~iyv~GG~~~~~~---~~~~~~~y~ 223 (346)
T TIGR03547 152 LIAAYFSQPPEDYFWNKNVLSYD--PSTNQWRNLGE--NPFLGTAGSAIVHKGN-KLLLINGEIKPGL---RTAEVKQYL 223 (346)
T ss_pred hHHHHhCCChhHcCccceEEEEE--CCCCceeECcc--CCCCcCCCceEEEECC-EEEEEeeeeCCCc---cchheEEEE
Confidence 0137899999 55779999975 775 688888888887 9999999865432 245677776
Q ss_pred CCCCCCceEEeecCCCCCCCCCCCCCCCCC-------cceEEEEecCCEEEEEcCcCCCC----------------CCCC
Q 042793 425 LSEEEPCWRCVTGSGMPGAGNPGGIAPPPR-------LDHVAVSLPGGRILIFGGSVAGL----------------HSAT 481 (545)
Q Consensus 425 ~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r-------~~~~~~~~~~~~l~v~GG~~~~~----------------~~~~ 481 (545)
++.++++|++++.+ |.+| ..|+++++ +++|||+||.+... ....
T Consensus 224 ~~~~~~~W~~~~~m------------~~~r~~~~~~~~~~~a~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (346)
T TIGR03547 224 FTGGKLEWNKLPPL------------PPPKSSSQEGLAGAFAGIS-NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAW 290 (346)
T ss_pred ecCCCceeeecCCC------------CCCCCCccccccEEeeeEE-CCEEEEeecCCCCCchhhhhcCCccccCCCCcee
Confidence 64337899999876 4443 34445555 99999999975311 0123
Q ss_pred ceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeee
Q 042793 482 QLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSL 542 (545)
Q Consensus 482 ~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l 542 (545)
.+.+||++ +++|+.+ +.+|.+|.+++++++ +++|||+||.+..+..+++||.|.+
T Consensus 291 ~~e~yd~~--~~~W~~~---~~lp~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~~~ 345 (346)
T TIGR03547 291 SSEVYALD--NGKWSKV---GKLPQGLAYGVSVSW-NNGVLLIGGENSGGKAVTDVYLLSW 345 (346)
T ss_pred EeeEEEec--CCccccc---CCCCCCceeeEEEEc-CCEEEEEeccCCCCCEeeeEEEEEe
Confidence 57899996 6799999 567888887776656 8999999999987778999998865
No 7
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=8.5e-36 Score=291.83 Aligned_cols=276 Identities=17% Similarity=0.309 Sum_probs=213.2
Q ss_pred CCCCceeeEEECCEEEEEcCCCCCC---------CccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEE
Q 042793 229 PSRCNFSACAVGNRVVLFGGEGVNM---------QPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVF 299 (545)
Q Consensus 229 ~~r~~~~~~~~~~~lyv~GG~~~~~---------~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~ 299 (545)
..++++.++++++.|||+||.+... ..++++++|+....+.+|..+. +||.+|..++++++ +++||++
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~--~lp~~r~~~~~~~~-~~~lyvi 78 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDG--QLPYEAAYGASVSV-ENGIYYI 78 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcc--cCCccccceEEEEE-CCEEEEE
Confidence 3567889999999999999986543 2457899987333323688765 88999988887777 5699999
Q ss_pred cCCCCCcccCcEEEEecCCCCCce----EeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCc
Q 042793 300 GGCGRQGLLNDVFVLDLDAKPPTW----REISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPV 375 (545)
Q Consensus 300 GG~~~~~~~~~~~~yd~~t~~~~W----~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~ 375 (545)
||......++++++||+.++ +| +.++++ |.+|..|++++++ ++|||+||... +...+++++||+. +++
T Consensus 79 GG~~~~~~~~~v~~~d~~~~--~w~~~~~~~~~l--p~~~~~~~~~~~~-~~iYv~GG~~~-~~~~~~v~~yd~~--~~~ 150 (323)
T TIGR03548 79 GGSNSSERFSSVYRITLDES--KEELICETIGNL--PFTFENGSACYKD-GTLYVGGGNRN-GKPSNKSYLFNLE--TQE 150 (323)
T ss_pred cCCCCCCCceeEEEEEEcCC--ceeeeeeEcCCC--CcCccCceEEEEC-CEEEEEeCcCC-CccCceEEEEcCC--CCC
Confidence 99887777899999999998 77 677777 8889999988884 59999999743 4457899999955 669
Q ss_pred eEEecCCCCC-CCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCC
Q 042793 376 WREIPVTWTP-PSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPR 454 (545)
Q Consensus 376 W~~~~~~~~p-~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r 454 (545)
|+.+++ +| .+|..|+++++++ +||++||..... ..++++||++ +++|+.+..+. .+..|..+
T Consensus 151 W~~~~~--~p~~~r~~~~~~~~~~-~iYv~GG~~~~~-----~~~~~~yd~~--~~~W~~~~~~~-------~~~~p~~~ 213 (323)
T TIGR03548 151 WFELPD--FPGEPRVQPVCVKLQN-ELYVFGGGSNIA-----YTDGYKYSPK--KNQWQKVADPT-------TDSEPISL 213 (323)
T ss_pred eeECCC--CCCCCCCcceEEEECC-EEEEEcCCCCcc-----ccceEEEecC--CCeeEECCCCC-------CCCCceec
Confidence 999875 66 4788888888887 999999986432 3678999999 88999987651 12234445
Q ss_pred cceEEEEecCCEEEEEcCcCCCC-------------------------------CCCCceEEEcCCCCCCceEEeccCCC
Q 042793 455 LDHVAVSLPGGRILIFGGSVAGL-------------------------------HSATQLYLLDPTEEKPTWRILNVPGR 503 (545)
Q Consensus 455 ~~~~~~~~~~~~l~v~GG~~~~~-------------------------------~~~~~v~~~d~~~~~~~W~~~~~~~~ 503 (545)
..++++++.+++|||+||.+... ...+++++||+. +++|+.+. .
T Consensus 214 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~--~~~W~~~~---~ 288 (323)
T TIGR03548 214 LGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVR--TGKWKSIG---N 288 (323)
T ss_pred cceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECC--CCeeeEcc---c
Confidence 56666666689999999976321 123679999997 77899995 3
Q ss_pred CC-CCCCCceeEEeCCeeEEEEcCCCCcccccccce
Q 042793 504 PP-RFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELH 538 (545)
Q Consensus 504 ~p-~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~ 538 (545)
+| .+|.+++++++ +++||++||....+.+.+++|
T Consensus 289 ~p~~~r~~~~~~~~-~~~iyv~GG~~~pg~rt~~~~ 323 (323)
T TIGR03548 289 SPFFARCGAALLLT-GNNIFSINGELKPGVRTPDIY 323 (323)
T ss_pred ccccccCchheEEE-CCEEEEEeccccCCcCCcCcC
Confidence 44 57888888887 789999999988776666654
No 8
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=313.88 Aligned_cols=250 Identities=11% Similarity=0.236 Sum_probs=211.1
Q ss_pred hhhhcccCCcEEeccCCCCCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeE
Q 042793 209 ELTTLEAATWRKLTVGGTVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTL 288 (545)
Q Consensus 209 ~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~ 288 (545)
..||+.+++|..+++ +|.+|..+++++++++|||+||.+.....++++++||+.++ +|..++ +||.+|..|++
T Consensus 275 ~~yd~~~~~W~~l~~---mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n--~W~~~~--~m~~~R~~~~~ 347 (557)
T PHA02713 275 LVYNINTMEYSVIST---IPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENK--IHVELP--PMIKNRCRFSL 347 (557)
T ss_pred EEEeCCCCeEEECCC---CCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCC--eEeeCC--CCcchhhceeE
Confidence 468999999999875 67788899999999999999997544456789999999998 999776 89999999999
Q ss_pred EEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCC----------
Q 042793 289 SCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSG---------- 358 (545)
Q Consensus 289 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~---------- 358 (545)
+++++ +||++||.++....+++++|||.++ +|+.+++| |.+|..+++++++ ++||++||.+...
T Consensus 348 ~~~~g-~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~m--p~~r~~~~~~~~~-g~IYviGG~~~~~~~~~~~~~~~ 421 (557)
T PHA02713 348 AVIDD-TIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDM--PIALSSYGMCVLD-QYIYIIGGRTEHIDYTSVHHMNS 421 (557)
T ss_pred EEECC-EEEEECCcCCCCCCceEEEEECCCC--eEEECCCC--CcccccccEEEEC-CEEEEEeCCCccccccccccccc
Confidence 88855 9999999876667789999999999 99999998 8999999998885 5999999975321
Q ss_pred -------CccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCC-C
Q 042793 359 -------VLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEE-P 430 (545)
Q Consensus 359 -------~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~-~ 430 (545)
...+.+++|| +.+++|+.+++ ++.+|..++++++++ +||++||..+... ..+.+.+||++ + +
T Consensus 422 ~~~~~~~~~~~~ve~YD--P~td~W~~v~~--m~~~r~~~~~~~~~~-~IYv~GG~~~~~~---~~~~ve~Ydp~--~~~ 491 (557)
T PHA02713 422 IDMEEDTHSSNKVIRYD--TVNNIWETLPN--FWTGTIRPGVVSHKD-DIYVVCDIKDEKN---VKTCIFRYNTN--TYN 491 (557)
T ss_pred ccccccccccceEEEEC--CCCCeEeecCC--CCcccccCcEEEECC-EEEEEeCCCCCCc---cceeEEEecCC--CCC
Confidence 1357899999 55779999976 999999999999988 9999999864332 13568899999 7 7
Q ss_pred ceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEecc
Q 042793 431 CWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNV 500 (545)
Q Consensus 431 ~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~ 500 (545)
+|+.++.+ |.+|..+.++++ +++||++||.++ ...+.+||+. +++|+.+..
T Consensus 492 ~W~~~~~m------------~~~r~~~~~~~~-~~~iyv~Gg~~~----~~~~e~yd~~--~~~W~~~~~ 542 (557)
T PHA02713 492 GWELITTT------------ESRLSALHTILH-DNTIMMLHCYES----YMLQDTFNVY--TYEWNHICH 542 (557)
T ss_pred CeeEcccc------------CcccccceeEEE-CCEEEEEeeecc----eeehhhcCcc--cccccchhh
Confidence 99999876 889988877777 999999999874 2468999997 789999853
No 9
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=3.1e-35 Score=292.88 Aligned_cols=282 Identities=19% Similarity=0.310 Sum_probs=209.2
Q ss_pred CCCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCC-CCccceeEEEEcCCEEEEEcCCCC
Q 042793 226 TVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPP-PGRWGHTLSCVNGSHLVVFGGCGR 304 (545)
Q Consensus 226 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~-~~r~~~~~~~~~~~~iyv~GG~~~ 304 (545)
++|.+|..+++++++++|||+||... +.+++||+....++|..++ ++| .+|..|+++++ +++|||+||...
T Consensus 24 ~lP~~~~~~~~~~~~~~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l~--~~p~~~r~~~~~v~~-~~~IYV~GG~~~ 95 (376)
T PRK14131 24 DLPVPFKNGTGAIDNNTVYVGLGSAG-----TSWYKLDLNAPSKGWTKIA--AFPGGPREQAVAAFI-DGKLYVFGGIGK 95 (376)
T ss_pred CCCcCccCCeEEEECCEEEEEeCCCC-----CeEEEEECCCCCCCeEECC--cCCCCCcccceEEEE-CCEEEEEcCCCC
Confidence 36778887888999999999999643 3689999875334899876 666 48998888877 459999999864
Q ss_pred ------CcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCC--------------------
Q 042793 305 ------QGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSG-------------------- 358 (545)
Q Consensus 305 ------~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~-------------------- 358 (545)
...++++|+||+.++ +|+.++++ .|.++.+|+++++.+++||++||.....
T Consensus 96 ~~~~~~~~~~~~v~~YD~~~n--~W~~~~~~-~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~ 172 (376)
T PRK14131 96 TNSEGSPQVFDDVYKYDPKTN--SWQKLDTR-SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDK 172 (376)
T ss_pred CCCCCceeEcccEEEEeCCCC--EEEeCCCC-CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhh
Confidence 124689999999999 99999852 3677778887773466999999975310
Q ss_pred -------------CccCcEEEEecCCCCCceEEecCCCCCC-CCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEe
Q 042793 359 -------------VLLSDTFLLDLSMEKPVWREIPVTWTPP-SRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMD 424 (545)
Q Consensus 359 -------------~~~~~~~~~d~~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d 424 (545)
...+++++|| +.+++|+.+.. +|. +|.+|+++.+++ +||++||....+. ...++|.|+
T Consensus 173 i~~~~~~~~~~~~~~~~~v~~YD--~~t~~W~~~~~--~p~~~~~~~a~v~~~~-~iYv~GG~~~~~~---~~~~~~~~~ 244 (376)
T PRK14131 173 INDAYFDKKPEDYFFNKEVLSYD--PSTNQWKNAGE--SPFLGTAGSAVVIKGN-KLWLINGEIKPGL---RTDAVKQGK 244 (376)
T ss_pred hHHHHhcCChhhcCcCceEEEEE--CCCCeeeECCc--CCCCCCCcceEEEECC-EEEEEeeeECCCc---CChhheEEE
Confidence 1247899999 55779999875 775 688888888877 9999999755432 245666554
Q ss_pred CCCCCCceEEeecCCCCCCCCCCCCCCCCCcc-------eEEEEecCCEEEEEcCcCCCCC----------------CCC
Q 042793 425 LSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLD-------HVAVSLPGGRILIFGGSVAGLH----------------SAT 481 (545)
Q Consensus 425 ~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~-------~~~~~~~~~~l~v~GG~~~~~~----------------~~~ 481 (545)
...++++|+++..+ |.+|.+ ++.+++.+++|||+||.+.... ...
T Consensus 245 ~~~~~~~W~~~~~~------------p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (376)
T PRK14131 245 FTGNNLKWQKLPDL------------PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSW 312 (376)
T ss_pred ecCCCcceeecCCC------------CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCccee
Confidence 42228899999866 444421 2223334899999999763211 012
Q ss_pred ceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeecc
Q 042793 482 QLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 482 ~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
.+.+||++ +++|+.+ +.+|.+|.+++++++ +++|||+||........++|++|++..
T Consensus 313 ~~e~yd~~--~~~W~~~---~~lp~~r~~~~av~~-~~~iyv~GG~~~~~~~~~~v~~~~~~~ 369 (376)
T PRK14131 313 SDEIYALV--NGKWQKV---GELPQGLAYGVSVSW-NNGVLLIGGETAGGKAVSDVTLLSWDG 369 (376)
T ss_pred ehheEEec--CCccccc---CcCCCCccceEEEEe-CCEEEEEcCCCCCCcEeeeEEEEEEcC
Confidence 46789996 6899988 578889988877766 899999999876656789999998765
No 10
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.5e-34 Score=293.38 Aligned_cols=277 Identities=17% Similarity=0.311 Sum_probs=215.7
Q ss_pred EEECCEEEEEcCCCCCCCccCce--EEEeCCCC--CCceEEeccC-CCCCCccceeEEEEcCCEEEEEcCCCCC--cccC
Q 042793 237 CAVGNRVVLFGGEGVNMQPMNDT--FVLDLNSS--NPEWQHVHVS-SPPPGRWGHTLSCVNGSHLVVFGGCGRQ--GLLN 309 (545)
Q Consensus 237 ~~~~~~lyv~GG~~~~~~~~~~~--~~~d~~t~--~~~W~~~~~~-~~~~~r~~~~~~~~~~~~iyv~GG~~~~--~~~~ 309 (545)
+..+++|+.|+|.... .++.+ |.+++.+. ..+|.++... .+|.||.+|+++++ +++|||+||.... ...+
T Consensus 117 ~~~~~~ivgf~G~~~~--~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~-~~~iyv~GG~~~~~~~~~~ 193 (470)
T PLN02193 117 VLQGGKIVGFHGRSTD--VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQV-GNKIYSFGGEFTPNQPIDK 193 (470)
T ss_pred EEcCCeEEEEeccCCC--cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEE-CCEEEEECCcCCCCCCeeC
Confidence 3458999999997543 34444 44465441 1399988643 36889999999887 5699999997532 2457
Q ss_pred cEEEEecCCCCCceEeccCC-CCCC-CCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCC-CCCC
Q 042793 310 DVFVLDLDAKPPTWREISGL-APPL-PRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVT-WTPP 386 (545)
Q Consensus 310 ~~~~yd~~t~~~~W~~~~~~-~~~~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~-~~p~ 386 (545)
++|+||+.++ +|+.++.+ ..|. .|..|+++++ +++|||+||... ...++++++||+. +++|+.+... ..|.
T Consensus 194 ~v~~yD~~~~--~W~~~~~~g~~P~~~~~~~~~v~~-~~~lYvfGG~~~-~~~~ndv~~yD~~--t~~W~~l~~~~~~P~ 267 (470)
T PLN02193 194 HLYVFDLETR--TWSISPATGDVPHLSCLGVRMVSI-GSTLYVFGGRDA-SRQYNGFYSFDTT--TNEWKLLTPVEEGPT 267 (470)
T ss_pred cEEEEECCCC--EEEeCCCCCCCCCCcccceEEEEE-CCEEEEECCCCC-CCCCccEEEEECC--CCEEEEcCcCCCCCC
Confidence 8999999999 99988754 2243 3567888777 559999999854 3467899999955 6699998752 2388
Q ss_pred CCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCE
Q 042793 387 SRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGR 466 (545)
Q Consensus 387 ~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~ 466 (545)
+|..|+++++++ +||++||...... .++++.||+. +++|+.++.. +..|.+|..|+++++ +++
T Consensus 268 ~R~~h~~~~~~~-~iYv~GG~~~~~~----~~~~~~yd~~--t~~W~~~~~~---------~~~~~~R~~~~~~~~-~gk 330 (470)
T PLN02193 268 PRSFHSMAADEE-NVYVFGGVSATAR----LKTLDSYNIV--DKKWFHCSTP---------GDSFSIRGGAGLEVV-QGK 330 (470)
T ss_pred CccceEEEEECC-EEEEECCCCCCCC----cceEEEEECC--CCEEEeCCCC---------CCCCCCCCCcEEEEE-CCc
Confidence 999999988887 9999999876443 5899999999 8999988654 345778888887776 899
Q ss_pred EEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCC--------cccccccce
Q 042793 467 ILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTG--------EEWMLSELH 538 (545)
Q Consensus 467 l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~--------~~~~~~~~~ 538 (545)
|||+||.+.. ..+++++||++ +++|+.+...+..|.+|..|+++++ +++||||||.+. .....+++|
T Consensus 331 iyviGG~~g~--~~~dv~~yD~~--t~~W~~~~~~g~~P~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~ndv~ 405 (470)
T PLN02193 331 VWVVYGFNGC--EVDDVHYYDPV--QDKWTQVETFGVRPSERSVFASAAV-GKHIVIFGGEIAMDPLAHVGPGQLTDGTF 405 (470)
T ss_pred EEEEECCCCC--ccCceEEEECC--CCEEEEeccCCCCCCCcceeEEEEE-CCEEEEECCccCCccccccCccceeccEE
Confidence 9999997632 36899999997 7899999877778999999998887 789999999863 124568999
Q ss_pred eeeecc
Q 042793 539 ELSLVS 544 (545)
Q Consensus 539 ~l~l~~ 544 (545)
+||+.+
T Consensus 406 ~~D~~t 411 (470)
T PLN02193 406 ALDTET 411 (470)
T ss_pred EEEcCc
Confidence 999875
No 11
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=299.55 Aligned_cols=260 Identities=14% Similarity=0.177 Sum_probs=208.8
Q ss_pred EEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCC-CCcccCcEEEEecCCCC
Q 042793 242 RVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCG-RQGLLNDVFVLDLDAKP 320 (545)
Q Consensus 242 ~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~t~~ 320 (545)
.|++.||.. ......+++||+.++ +|..++ +||.+|..|+++++ +++|||+||.. .....+++++||+.++
T Consensus 259 ~l~~~~g~~--~~~~~~v~~yd~~~~--~W~~l~--~mp~~r~~~~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n- 330 (557)
T PHA02713 259 CLVCHDTKY--NVCNPCILVYNINTM--EYSVIS--TIPNHIINYASAIV-DNEIIIAGGYNFNNPSLNKVYKINIENK- 330 (557)
T ss_pred EEEEecCcc--ccCCCCEEEEeCCCC--eEEECC--CCCccccceEEEEE-CCEEEEEcCCCCCCCccceEEEEECCCC-
Confidence 355555521 123357899999998 999876 89999999988877 55999999975 3345789999999999
Q ss_pred CceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcE
Q 042793 321 PTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRK 400 (545)
Q Consensus 321 ~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~ 400 (545)
+|..+++| |.+|..+++++++ ++||++||.+. ...++++++|| +.+++|+.+++ +|.+|..++++++++ +
T Consensus 331 -~W~~~~~m--~~~R~~~~~~~~~-g~IYviGG~~~-~~~~~sve~Yd--p~~~~W~~~~~--mp~~r~~~~~~~~~g-~ 400 (557)
T PHA02713 331 -IHVELPPM--IKNRCRFSLAVID-DTIYAIGGQNG-TNVERTIECYT--MGDDKWKMLPD--MPIALSSYGMCVLDQ-Y 400 (557)
T ss_pred -eEeeCCCC--cchhhceeEEEEC-CEEEEECCcCC-CCCCceEEEEE--CCCCeEEECCC--CCcccccccEEEECC-E
Confidence 99999999 8899999998885 59999999853 34577899999 45679999976 999999999999987 9
Q ss_pred EEEEcccCCCCCC--------------ccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCE
Q 042793 401 ILMFGGLAKSGPL--------------RFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGR 466 (545)
Q Consensus 401 lyi~GG~~~~~~~--------------~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~ 466 (545)
||++||....... ....+.++.|||. +++|+.++.+ +.+|..++++++ +++
T Consensus 401 IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~--td~W~~v~~m------------~~~r~~~~~~~~-~~~ 465 (557)
T PHA02713 401 IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV--NNIWETLPNF------------WTGTIRPGVVSH-KDD 465 (557)
T ss_pred EEEEeCCCcccccccccccccccccccccccceEEEECCC--CCeEeecCCC------------CcccccCcEEEE-CCE
Confidence 9999998643210 0124789999999 8999999876 788888877776 999
Q ss_pred EEEEcCcCCCCCCCCceEEEcCCCCC-CceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeecc
Q 042793 467 ILIFGGSVAGLHSATQLYLLDPTEEK-PTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 467 l~v~GG~~~~~~~~~~v~~~d~~~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
|||+||.+......+.+++|||+ + ++|+.+ +.+|.+|..++++++ +++||++||+++. ..+.+||+..
T Consensus 466 IYv~GG~~~~~~~~~~ve~Ydp~--~~~~W~~~---~~m~~~r~~~~~~~~-~~~iyv~Gg~~~~----~~~e~yd~~~ 534 (557)
T PHA02713 466 IYVVCDIKDEKNVKTCIFRYNTN--TYNGWELI---TTTESRLSALHTILH-DNTIMMLHCYESY----MLQDTFNVYT 534 (557)
T ss_pred EEEEeCCCCCCccceeEEEecCC--CCCCeeEc---cccCcccccceeEEE-CCEEEEEeeecce----eehhhcCccc
Confidence 99999986433334568999996 6 689999 578999999999888 8999999999863 3577888764
No 12
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.8e-33 Score=277.35 Aligned_cols=258 Identities=21% Similarity=0.355 Sum_probs=197.2
Q ss_pred hhhcccCCcEEeccCCCCCC-CCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccC---CCCCCccc
Q 042793 210 LTTLEAATWRKLTVGGTVEP-SRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVS---SPPPGRWG 285 (545)
Q Consensus 210 ~~~~~~~~W~~~~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~---~~~~~r~~ 285 (545)
.||+.+++|..+++.+..|. .+.+|++++++++||||||.... ..++++++||+.++ +|+.++.. ..|.+|..
T Consensus 54 ~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~ 130 (341)
T PLN02153 54 VFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTF 130 (341)
T ss_pred EEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCC-CccCcEEEEECCCC--EEEEeccCCCCCCCCCcee
Confidence 68999999999876544444 34578999999999999997543 45789999999998 99987621 13789999
Q ss_pred eeEEEEcCCEEEEEcCCCCCc------ccCcEEEEecCCCCCceEeccCCC-CCCCCccceEEEEcCCEEEEEcCCCCC-
Q 042793 286 HTLSCVNGSHLVVFGGCGRQG------LLNDVFVLDLDAKPPTWREISGLA-PPLPRSWHSSCTLDGTKLIVSGGCADS- 357 (545)
Q Consensus 286 ~~~~~~~~~~iyv~GG~~~~~------~~~~~~~yd~~t~~~~W~~~~~~~-~~~~r~~~~~~~~~~~~iyv~GG~~~~- 357 (545)
|+++++ +++|||+||..... .++++++||++++ +|+.++.+. .|.+|.+|++++++ ++|||+||....
T Consensus 131 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~l~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~ 206 (341)
T PLN02153 131 HSMASD-ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG--KWVQLPDPGENFEKRGGAGFAVVQ-GKIWVVYGFATSI 206 (341)
T ss_pred eEEEEE-CCEEEEECCccCCCccCCCcccceEEEEECCCC--eEeeCCCCCCCCCCCCcceEEEEC-CeEEEEecccccc
Confidence 998877 45999999986432 3578999999999 999998763 45789999988885 499999986421
Q ss_pred ------CCccCcEEEEecCCCCCceEEecCC-CCCCCCCCcEEEEECCcEEEEEcccCCCC-----CCccccCcEEEEeC
Q 042793 358 ------GVLLSDTFLLDLSMEKPVWREIPVT-WTPPSRLGHTLSVYGGRKILMFGGLAKSG-----PLRFRSSDVFTMDL 425 (545)
Q Consensus 358 ------~~~~~~~~~~d~~~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~lyi~GG~~~~~-----~~~~~~~~i~~~d~ 425 (545)
....+++++||+. +++|+++... .+|.+|..|+++++++ +|||+||..... ......+++|.||+
T Consensus 207 ~~gG~~~~~~~~v~~yd~~--~~~W~~~~~~g~~P~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~ 283 (341)
T PLN02153 207 LPGGKSDYESNAVQFFDPA--SGKWTEVETTGAKPSARSVFAHAVVGK-YIIIFGGEVWPDLKGHLGPGTLSNEGYALDT 283 (341)
T ss_pred ccCCccceecCceEEEEcC--CCcEEeccccCCCCCCcceeeeEEECC-EEEEECcccCCccccccccccccccEEEEEc
Confidence 1235789999954 6799998753 4688999999999987 999999974211 00112579999999
Q ss_pred CCCCCceEEeecCCCCCCCCCCCCCCCCC--cceEEEEec-CCEEEEEcCcCCCCCCCCceEEEcC
Q 042793 426 SEEEPCWRCVTGSGMPGAGNPGGIAPPPR--LDHVAVSLP-GGRILIFGGSVAGLHSATQLYLLDP 488 (545)
Q Consensus 426 ~~~~~~W~~v~~~~~~~~~~~~g~~p~~r--~~~~~~~~~-~~~l~v~GG~~~~~~~~~~v~~~d~ 488 (545)
+ +++|+.+... +..|.|| ..++++.+. +++|||+||.+......+++|+|+.
T Consensus 284 ~--~~~W~~~~~~---------~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~ 338 (341)
T PLN02153 284 E--TLVWEKLGEC---------GEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAV 338 (341)
T ss_pred C--ccEEEeccCC---------CCCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEEec
Confidence 9 8999998654 3345555 334444443 4589999999876677899999987
No 13
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=2.6e-33 Score=284.75 Aligned_cols=293 Identities=33% Similarity=0.570 Sum_probs=240.2
Q ss_pred cCCCCCCCCCceeeEEECCEEEEEcCCCCCCCccC-ceEEEeCCCCCCceEEeccC-CCCCCccceeEEEEcCCEEEEEc
Q 042793 223 VGGTVEPSRCNFSACAVGNRVVLFGGEGVNMQPMN-DTFVLDLNSSNPEWQHVHVS-SPPPGRWGHTLSCVNGSHLVVFG 300 (545)
Q Consensus 223 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~-~~~~~d~~t~~~~W~~~~~~-~~~~~r~~~~~~~~~~~~iyv~G 300 (545)
..+..|.+|++|+++.+++++|||||........+ ++|++|..+. .|....+. ..|.+|++|++++++ ++||+||
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~--~w~~~~~~g~~p~~r~g~~~~~~~-~~l~lfG 129 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQ--LWTKPAATGDEPSPRYGHSLSAVG-DKLYLFG 129 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCc--ccccccccCCCCCcccceeEEEEC-CeEEEEc
Confidence 34567889999999999999999999865544333 6999999987 99876543 467899999999885 5999999
Q ss_pred CCCC-CcccCcEEEEecCCCCCceEeccCC-CCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEE
Q 042793 301 GCGR-QGLLNDVFVLDLDAKPPTWREISGL-APPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWRE 378 (545)
Q Consensus 301 G~~~-~~~~~~~~~yd~~t~~~~W~~~~~~-~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~ 378 (545)
|.+. ....++++.||+.|+ +|+.+... .+|.+|.+|+++++ |+++|||||.+..+...+++|+||+. +.+|.+
T Consensus 130 G~~~~~~~~~~l~~~d~~t~--~W~~l~~~~~~P~~r~~Hs~~~~-g~~l~vfGG~~~~~~~~ndl~i~d~~--~~~W~~ 204 (482)
T KOG0379|consen 130 GTDKKYRNLNELHSLDLSTR--TWSLLSPTGDPPPPRAGHSATVV-GTKLVVFGGIGGTGDSLNDLHIYDLE--TSTWSE 204 (482)
T ss_pred cccCCCCChhheEeccCCCC--cEEEecCcCCCCCCcccceEEEE-CCEEEEECCccCcccceeeeeeeccc--ccccee
Confidence 9985 447899999999999 99988754 34899999999988 57999999998777689999999965 668999
Q ss_pred ecC-CCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcce
Q 042793 379 IPV-TWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDH 457 (545)
Q Consensus 379 ~~~-~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~ 457 (545)
+.. +..|.||++|+++++++ +++++||...... +++|+|.||+. +.+|.++... +..|.+|+.|
T Consensus 205 ~~~~g~~P~pR~gH~~~~~~~-~~~v~gG~~~~~~---~l~D~~~ldl~--~~~W~~~~~~---------g~~p~~R~~h 269 (482)
T KOG0379|consen 205 LDTQGEAPSPRYGHAMVVVGN-KLLVFGGGDDGDV---YLNDVHILDLS--TWEWKLLPTG---------GDLPSPRSGH 269 (482)
T ss_pred cccCCCCCCCCCCceEEEECC-eEEEEeccccCCc---eecceEeeecc--cceeeecccc---------CCCCCCccee
Confidence 976 46788999999999998 8999888873332 48999999999 8999977665 7899999999
Q ss_pred EEEEecCCEEEEEcCcCCCCC-CCCceEEEcCCCCCCceEEeccCC-CCCCCCCCceeEEeC---CeeEEEEcCCCCccc
Q 042793 458 VAVSLPGGRILIFGGSVAGLH-SATQLYLLDPTEEKPTWRILNVPG-RPPRFAWGHSTCVVG---GTRTIVLGGQTGEEW 532 (545)
Q Consensus 458 ~~~~~~~~~l~v~GG~~~~~~-~~~~v~~~d~~~~~~~W~~~~~~~-~~p~~r~~~~~~~~~---~~~l~i~GG~~~~~~ 532 (545)
+.++. +.+++|+||...+.. ...++|.||.+ +..|..+...+ ..|.+|..++.+.+. ...+.++||......
T Consensus 270 ~~~~~-~~~~~l~gG~~~~~~~~l~~~~~l~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (482)
T KOG0379|consen 270 SLTVS-GDHLLLFGGGTDPKQEPLGDLYGLDLE--TLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGE 346 (482)
T ss_pred eeEEE-CCEEEEEcCCccccccccccccccccc--ccceeeeeccccccccccccccceeeccCCccceeeecCcccccc
Confidence 99955 999999999875433 57899999996 78999998877 788889988888764 244666777555554
Q ss_pred ccccceeee
Q 042793 533 MLSELHELS 541 (545)
Q Consensus 533 ~~~~~~~l~ 541 (545)
..++++.+.
T Consensus 347 ~~~~~~~~~ 355 (482)
T KOG0379|consen 347 RLADVFSLQ 355 (482)
T ss_pred chhhccccc
Confidence 556666544
No 14
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.2e-33 Score=293.00 Aligned_cols=251 Identities=19% Similarity=0.281 Sum_probs=206.7
Q ss_pred hhcccCCcEEeccCCCCCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEE
Q 042793 211 TTLEAATWRKLTVGGTVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSC 290 (545)
Q Consensus 211 ~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~ 290 (545)
|+....+|..++. .| .+..+++++++++||++||........+++++||+.++ +|..++ +||.+|..|++++
T Consensus 269 ~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~--~~~~~R~~~~~~~ 340 (534)
T PHA03098 269 NYSPLSEINTIID---IH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTK--SWNKVP--ELIYPRKNPGVTV 340 (534)
T ss_pred cchhhhhcccccC---cc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCC--eeeECC--CCCcccccceEEE
Confidence 5555667776642 22 34567899999999999998766667789999999998 999775 8889999999888
Q ss_pred EcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 291 VNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 291 ~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
++ ++||++||.......+++++||+.++ +|+.++++ |.||+.|+++.++ ++||++||.......++++++||+.
T Consensus 341 ~~-~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l--p~~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~v~~yd~~ 414 (534)
T PHA03098 341 FN-NRIYVIGGIYNSISLNTVESWKPGES--KWREEPPL--IFPRYNPCVVNVN-NLIYVIGGISKNDELLKTVECFSLN 414 (534)
T ss_pred EC-CEEEEEeCCCCCEecceEEEEcCCCC--ceeeCCCc--CcCCccceEEEEC-CEEEEECCcCCCCcccceEEEEeCC
Confidence 74 59999999986667899999999999 99999988 8899999998884 5999999986655567899999954
Q ss_pred CCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCC
Q 042793 371 MEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIA 450 (545)
Q Consensus 371 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~ 450 (545)
+++|+.+++ +|.+|.+|+++.+++ +||++||....... ...+.+++||+. +++|+.++.+
T Consensus 415 --t~~W~~~~~--~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~-~~~~~v~~yd~~--~~~W~~~~~~------------ 474 (534)
T PHA03098 415 --TNKWSKGSP--LPISHYGGCAIYHDG-KIYVIGGISYIDNI-KVYNIVESYNPV--TNKWTELSSL------------ 474 (534)
T ss_pred --CCeeeecCC--CCccccCceEEEECC-EEEEECCccCCCCC-cccceEEEecCC--CCceeeCCCC------------
Confidence 669999876 889999999998987 99999998654321 114669999999 8999999765
Q ss_pred CCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEec
Q 042793 451 PPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILN 499 (545)
Q Consensus 451 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~ 499 (545)
|.+|..++++++ +++|||+||.+... ..+++++||++ +++|+.+.
T Consensus 475 ~~~r~~~~~~~~-~~~iyv~GG~~~~~-~~~~v~~yd~~--~~~W~~~~ 519 (534)
T PHA03098 475 NFPRINASLCIF-NNKIYVVGGDKYEY-YINEIEVYDDK--TNTWTLFC 519 (534)
T ss_pred CcccccceEEEE-CCEEEEEcCCcCCc-ccceeEEEeCC--CCEEEecC
Confidence 778888877776 99999999987433 36889999996 78999984
No 15
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=5.5e-34 Score=248.04 Aligned_cols=244 Identities=26% Similarity=0.520 Sum_probs=200.3
Q ss_pred hhhhhcccCCcEEeccC----------CCCCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccC
Q 042793 208 RELTTLEAATWRKLTVG----------GTVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVS 277 (545)
Q Consensus 208 ~~~~~~~~~~W~~~~~~----------~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~ 277 (545)
.++++..+.+|.++++. +..|-.|++|+++.+++++||.||.+......|-+|+||++++ +|++.+..
T Consensus 46 VH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~--~W~~p~v~ 123 (392)
T KOG4693|consen 46 VHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETN--VWKKPEVE 123 (392)
T ss_pred eEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccc--ccccccee
Confidence 34566677788777651 0134569999999999999999998776678899999999999 99987654
Q ss_pred -CCCCCccceeEEEEcCCEEEEEcCCCCC--cccCcEEEEecCCCCCceEeccCC-CCCCCCccceEEEEcCCEEEEEcC
Q 042793 278 -SPPPGRWGHTLSCVNGSHLVVFGGCGRQ--GLLNDVFVLDLDAKPPTWREISGL-APPLPRSWHSSCTLDGTKLIVSGG 353 (545)
Q Consensus 278 -~~~~~r~~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~yd~~t~~~~W~~~~~~-~~~~~r~~~~~~~~~~~~iyv~GG 353 (545)
-.|.+|.+|+++++ ++.+|||||+..+ ...++++++|..|. +|+.+... .+|.-|..|++++++ +.+|||||
T Consensus 124 G~vPgaRDGHsAcV~-gn~MyiFGGye~~a~~FS~d~h~ld~~Tm--tWr~~~Tkg~PprwRDFH~a~~~~-~~MYiFGG 199 (392)
T KOG4693|consen 124 GFVPGARDGHSACVW-GNQMYIFGGYEEDAQRFSQDTHVLDFATM--TWREMHTKGDPPRWRDFHTASVID-GMMYIFGG 199 (392)
T ss_pred eecCCccCCceeeEE-CcEEEEecChHHHHHhhhccceeEeccce--eeeehhccCCCchhhhhhhhhhcc-ceEEEecc
Confidence 37889999999988 6699999998654 37889999999999 99988643 557888999999985 59999999
Q ss_pred CCCCC--------CccCcEEEEecCCCCCceEEecCC-CCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEe
Q 042793 354 CADSG--------VLLSDTFLLDLSMEKPVWREIPVT-WTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMD 424 (545)
Q Consensus 354 ~~~~~--------~~~~~~~~~d~~~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d 424 (545)
..+.. .+.+.+..+|+. +..|...+.. ..|.+|..|++-++++ ++|+|||+++.-. .-.+++|.||
T Consensus 200 R~D~~gpfHs~~e~Yc~~i~~ld~~--T~aW~r~p~~~~~P~GRRSHS~fvYng-~~Y~FGGYng~ln--~HfndLy~Fd 274 (392)
T KOG4693|consen 200 RSDESGPFHSIHEQYCDTIMALDLA--TGAWTRTPENTMKPGGRRSHSTFVYNG-KMYMFGGYNGTLN--VHFNDLYCFD 274 (392)
T ss_pred ccccCCCccchhhhhcceeEEEecc--ccccccCCCCCcCCCcccccceEEEcc-eEEEecccchhhh--hhhcceeecc
Confidence 86532 345668889966 5599887653 4678899999999988 9999999976332 2479999999
Q ss_pred CCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcC
Q 042793 425 LSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSV 474 (545)
Q Consensus 425 ~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~ 474 (545)
+. +..|..+... |..|.+|..+++++. ++++|+|||..
T Consensus 275 P~--t~~W~~I~~~---------Gk~P~aRRRqC~~v~-g~kv~LFGGTs 312 (392)
T KOG4693|consen 275 PK--TSMWSVISVR---------GKYPSARRRQCSVVS-GGKVYLFGGTS 312 (392)
T ss_pred cc--cchheeeecc---------CCCCCcccceeEEEE-CCEEEEecCCC
Confidence 99 8999999876 788999999999998 99999999965
No 16
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.1e-33 Score=264.69 Aligned_cols=300 Identities=29% Similarity=0.536 Sum_probs=235.2
Q ss_pred cCCcEEec-cCCCCCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEecc-CCCCCCccceeEEEEc
Q 042793 215 AATWRKLT-VGGTVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHV-SSPPPGRWGHTLSCVN 292 (545)
Q Consensus 215 ~~~W~~~~-~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~-~~~~~~r~~~~~~~~~ 292 (545)
.-+|+++. ..|+.|.+|.+|.++++..-|+||||- +....+++++||..++ +|....+ .+.|++...|.+++.
T Consensus 16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGG--NEGiiDELHvYNTatn--qWf~PavrGDiPpgcAA~Gfvcd- 90 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGG--NEGIIDELHVYNTATN--QWFAPAVRGDIPPGCAAFGFVCD- 90 (830)
T ss_pred ccceEEEecccCCCCCccccchheeeeeeEEEecCC--cccchhhhhhhccccc--eeecchhcCCCCCchhhcceEec-
Confidence 45677764 467789999999999999999999994 3456789999999998 9986543 467888777887654
Q ss_pred CCEEEEEcCCCCCc-ccCcEEEEecCCCCCceEecc-----CCCCCCCCccceEEEEcCCEEEEEcCCCCC--------C
Q 042793 293 GSHLVVFGGCGRQG-LLNDVFVLDLDAKPPTWREIS-----GLAPPLPRSWHSSCTLDGTKLIVSGGCADS--------G 358 (545)
Q Consensus 293 ~~~iyv~GG~~~~~-~~~~~~~yd~~t~~~~W~~~~-----~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~--------~ 358 (545)
|++||+|||+-.-+ +.|++|.+....= .|+++. +..+|.||.+|+...+ +++-|+|||..++ .
T Consensus 91 GtrilvFGGMvEYGkYsNdLYELQasRW--eWkrlkp~~p~nG~pPCPRlGHSFsl~-gnKcYlFGGLaNdseDpknNvP 167 (830)
T KOG4152|consen 91 GTRILVFGGMVEYGKYSNDLYELQASRW--EWKRLKPKTPKNGPPPCPRLGHSFSLV-GNKCYLFGGLANDSEDPKNNVP 167 (830)
T ss_pred CceEEEEccEeeeccccchHHHhhhhhh--hHhhcCCCCCCCCCCCCCccCceeEEe-ccEeEEeccccccccCcccccc
Confidence 78999999987654 7788776544333 666654 3356899999998777 6799999997532 2
Q ss_pred CccCcEEEEecCCCC--CceEEecC-CCCCCCCCCcEEEEEC-----CcEEEEEcccCCCCCCccccCcEEEEeCCCCCC
Q 042793 359 VLLSDTFLLDLSMEK--PVWREIPV-TWTPPSRLGHTLSVYG-----GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEP 430 (545)
Q Consensus 359 ~~~~~~~~~d~~~~~--~~W~~~~~-~~~p~~r~~~~~~~~~-----~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~ 430 (545)
.+++|+|++++.+.. ..|..... +..|++|..|+++++. ..++|++||..+-. +.|+|.+|++ +.
T Consensus 168 rYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R-----LgDLW~Ldl~--Tl 240 (830)
T KOG4152|consen 168 RYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR-----LGDLWTLDLD--TL 240 (830)
T ss_pred hhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc-----ccceeEEecc--ee
Confidence 588999999987543 36876543 5689999999999982 23799999987754 6999999999 99
Q ss_pred ceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcC-------------CCCCCCCceEEEcCCCCCCceEE
Q 042793 431 CWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSV-------------AGLHSATQLYLLDPTEEKPTWRI 497 (545)
Q Consensus 431 ~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~-------------~~~~~~~~v~~~d~~~~~~~W~~ 497 (545)
+|.+.... |..|.||..|++..+ ++|+|||||+- .....++.+-+++++ +..|..
T Consensus 241 ~W~kp~~~---------G~~PlPRSLHsa~~I-GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNld--t~~W~t 308 (830)
T KOG4152|consen 241 TWNKPSLS---------GVAPLPRSLHSATTI-GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLD--TMAWET 308 (830)
T ss_pred eccccccc---------CCCCCCcccccceee-cceeEEecceeeeeccccccccccceeeeccceeeeeec--chheee
Confidence 99998766 778999999999998 99999999963 122346778889997 678998
Q ss_pred eccC----CCCCCCCCCceeEEeCCeeEEEEcCCCCc------ccccccceeeee
Q 042793 498 LNVP----GRPPRFAWGHSTCVVGGTRTIVLGGQTGE------EWMLSELHELSL 542 (545)
Q Consensus 498 ~~~~----~~~p~~r~~~~~~~~~~~~l~i~GG~~~~------~~~~~~~~~l~l 542 (545)
+... ...|++|.+||++++ +.++||..|.++- .-.-.|+|.||-
T Consensus 309 l~~d~~ed~tiPR~RAGHCAvAi-gtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT 362 (830)
T KOG4152|consen 309 LLMDTLEDNTIPRARAGHCAVAI-GTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT 362 (830)
T ss_pred eeeccccccccccccccceeEEe-ccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence 7543 237899999999999 8999999998852 122356777764
No 17
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=5.2e-33 Score=256.13 Aligned_cols=251 Identities=25% Similarity=0.473 Sum_probs=213.6
Q ss_pred CCCCCccceeEEEE-cCCEEEEEcCCCCCc----ccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEc
Q 042793 278 SPPPGRWGHTLSCV-NGSHLVVFGGCGRQG----LLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSG 352 (545)
Q Consensus 278 ~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~----~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~G 352 (545)
+.|.||..+++++. ..+.|++|||.-..+ .+|++|+||+.++ +|+++.+.+.|.||+.|.++++..+.+|+||
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~--eWkk~~spn~P~pRsshq~va~~s~~l~~fG 139 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKN--EWKKVVSPNAPPPRSSHQAVAVPSNILWLFG 139 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEecccc--ceeEeccCCCcCCCccceeEEeccCeEEEec
Confidence 56889999888764 334799999964322 6899999999999 9999998888999999999999766999999
Q ss_pred CCCCCC-----CccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCC
Q 042793 353 GCADSG-----VLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSE 427 (545)
Q Consensus 353 G~~~~~-----~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~ 427 (545)
|...+. .-..|+|.||+. +++|+++..++.|.+|.+|.|++... +|+||||.........++||+|.||++
T Consensus 140 GEfaSPnq~qF~HYkD~W~fd~~--trkweql~~~g~PS~RSGHRMvawK~-~lilFGGFhd~nr~y~YyNDvy~FdLd- 215 (521)
T KOG1230|consen 140 GEFASPNQEQFHHYKDLWLFDLK--TRKWEQLEFGGGPSPRSGHRMVAWKR-QLILFGGFHDSNRDYIYYNDVYAFDLD- 215 (521)
T ss_pred cccCCcchhhhhhhhheeeeeec--cchheeeccCCCCCCCccceeEEeee-eEEEEcceecCCCceEEeeeeEEEecc-
Confidence 964322 245789999977 55999999888999999999999988 999999998887777789999999999
Q ss_pred CCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCC--------CCCCCCceEEEcCCC---CCCceE
Q 042793 428 EEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVA--------GLHSATQLYLLDPTE---EKPTWR 496 (545)
Q Consensus 428 ~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~~~v~~~d~~~---~~~~W~ 496 (545)
+-+|.++.+. |..|.||.+++..+...+.|||+||+.. -+...+|+|.++++. .+.+|.
T Consensus 216 -tykW~Kleps---------ga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~ 285 (521)
T KOG1230|consen 216 -TYKWSKLEPS---------GAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWT 285 (521)
T ss_pred -ceeeeeccCC---------CCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEe
Confidence 9999999875 6689999999988888999999999752 223478999999963 237899
Q ss_pred EeccCCCCCCCCCCceeEEeCCeeEEEEcCCCC--------cccccccceeeeecc
Q 042793 497 ILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTG--------EEWMLSELHELSLVS 544 (545)
Q Consensus 497 ~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~--------~~~~~~~~~~l~l~~ 544 (545)
.+.+.|..|.+|.++++++..+++-+.|||.-. .+.+.||+|-|++.+
T Consensus 286 kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~ 341 (521)
T KOG1230|consen 286 KVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTR 341 (521)
T ss_pred eccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheeccc
Confidence 999999999999999999998999999999643 346899999999875
No 18
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.8e-31 Score=264.22 Aligned_cols=249 Identities=22% Similarity=0.393 Sum_probs=187.4
Q ss_pred hhhc--ccCCcEEeccCCCCC-CCCCceeeEEECCEEEEEcCCCCCC-----CccCceEEEeCCCCCCceEEeccCCCCC
Q 042793 210 LTTL--EAATWRKLTVGGTVE-PSRCNFSACAVGNRVVLFGGEGVNM-----QPMNDTFVLDLNSSNPEWQHVHVSSPPP 281 (545)
Q Consensus 210 ~~~~--~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~-----~~~~~~~~~d~~t~~~~W~~~~~~~~~~ 281 (545)
.||+ ..++|..++. +| .+|..+++++++++|||+||..... ..++++++||+.++ +|+.++ ..+|.
T Consensus 33 ~~d~~~~~~~W~~l~~---~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~--~W~~~~-~~~p~ 106 (346)
T TIGR03547 33 KLDLKKPSKGWQKIAD---FPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN--SWQKLD-TRSPV 106 (346)
T ss_pred EEECCCCCCCceECCC---CCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCC--EEecCC-CCCCC
Confidence 4554 5688999874 55 5799999999999999999975322 25789999999998 999875 24677
Q ss_pred CccceeEEEEcCCEEEEEcCCCCCc----------------------------------ccCcEEEEecCCCCCceEecc
Q 042793 282 GRWGHTLSCVNGSHLVVFGGCGRQG----------------------------------LLNDVFVLDLDAKPPTWREIS 327 (545)
Q Consensus 282 ~r~~~~~~~~~~~~iyv~GG~~~~~----------------------------------~~~~~~~yd~~t~~~~W~~~~ 327 (545)
+|.+|+++.+.+++||++||.+... ..+++++||+.++ +|+.++
T Consensus 107 ~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~--~W~~~~ 184 (346)
T TIGR03547 107 GLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN--QWRNLG 184 (346)
T ss_pred cccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC--ceeECc
Confidence 7888877633456999999986321 1378999999999 999999
Q ss_pred CCCCCC-CCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCC-------CCcEEEEECCc
Q 042793 328 GLAPPL-PRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSR-------LGHTLSVYGGR 399 (545)
Q Consensus 328 ~~~~~~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r-------~~~~~~~~~~~ 399 (545)
+| |. +|..++++.+ +++|||+||.........+++.|++++++++|+.++. +|.+| .+|+++++++
T Consensus 185 ~~--p~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~--m~~~r~~~~~~~~~~~a~~~~~- 258 (346)
T TIGR03547 185 EN--PFLGTAGSAIVHK-GNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP--LPPPKSSSQEGLAGAFAGISNG- 258 (346)
T ss_pred cC--CCCcCCCceEEEE-CCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC--CCCCCCCccccccEEeeeEECC-
Confidence 88 54 6788887777 5599999998644434456788887677889999876 65544 3555677877
Q ss_pred EEEEEcccCCCCCC-------------ccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCE
Q 042793 400 KILMFGGLAKSGPL-------------RFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGR 466 (545)
Q Consensus 400 ~lyi~GG~~~~~~~-------------~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~ 466 (545)
+||++||....+.. ......+.+||++ +++|+.+..+ |.+|..++++++ +++
T Consensus 259 ~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~--~~~W~~~~~l------------p~~~~~~~~~~~-~~~ 323 (346)
T TIGR03547 259 VLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD--NGKWSKVGKL------------PQGLAYGVSVSW-NNG 323 (346)
T ss_pred EEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec--CCcccccCCC------------CCCceeeEEEEc-CCE
Confidence 99999997632110 0011356788988 7899999766 788877766555 999
Q ss_pred EEEEcCcCCCCCCCCceEEEc
Q 042793 467 ILIFGGSVAGLHSATQLYLLD 487 (545)
Q Consensus 467 l~v~GG~~~~~~~~~~v~~~d 487 (545)
|||+||.+.....+++++.|-
T Consensus 324 iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 324 VLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred EEEEeccCCCCCEeeeEEEEE
Confidence 999999887667778887764
No 19
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=8.4e-32 Score=248.20 Aligned_cols=258 Identities=28% Similarity=0.466 Sum_probs=209.1
Q ss_pred CCCCCCCceeeEEE--CCEEEEEcCCCCCCC---ccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEc
Q 042793 226 TVEPSRCNFSACAV--GNRVVLFGGEGVNMQ---PMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFG 300 (545)
Q Consensus 226 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~---~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~G 300 (545)
.+|+||.++++++. .+.|++|||.-.+++ ..+|+|.||..++ .|+++..+..|.||+.|.++++..+.+|+||
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~--eWkk~~spn~P~pRsshq~va~~s~~l~~fG 139 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKN--EWKKVVSPNAPPPRSSHQAVAVPSNILWLFG 139 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEecccc--ceeEeccCCCcCCCccceeEEeccCeEEEec
Confidence 46889998888876 468999999644433 5799999999988 9999988888999999999998767999999
Q ss_pred CCCCC------cccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCC---CCccCcEEEEecCC
Q 042793 301 GCGRQ------GLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADS---GVLLSDTFLLDLSM 371 (545)
Q Consensus 301 G~~~~------~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~~d~~~ 371 (545)
|.... -.+.|+|+||+.|+ +|+++.....|.||++|-++++. ++|+||||+.+. ..++||+|+||++
T Consensus 140 GEfaSPnq~qF~HYkD~W~fd~~tr--kweql~~~g~PS~RSGHRMvawK-~~lilFGGFhd~nr~y~YyNDvy~FdLd- 215 (521)
T KOG1230|consen 140 GEFASPNQEQFHHYKDLWLFDLKTR--KWEQLEFGGGPSPRSGHRMVAWK-RQLILFGGFHDSNRDYIYYNDVYAFDLD- 215 (521)
T ss_pred cccCCcchhhhhhhhheeeeeeccc--hheeeccCCCCCCCccceeEEee-eeEEEEcceecCCCceEEeeeeEEEecc-
Confidence 96432 15789999999999 99999877779999999999995 599999998654 3588999999977
Q ss_pred CCCceEEecCC-CCCCCCCCcEEEEECCcEEEEEcccCCCCCC-----ccccCcEEEEeCCC---CCCceEEeecCCCCC
Q 042793 372 EKPVWREIPVT-WTPPSRLGHTLSVYGGRKILMFGGLAKSGPL-----RFRSSDVFTMDLSE---EEPCWRCVTGSGMPG 442 (545)
Q Consensus 372 ~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~-----~~~~~~i~~~d~~~---~~~~W~~v~~~~~~~ 442 (545)
+-+|+++.+. ..|.+|.++++.+...+.||+.||+...... -...+|+|.++++. +.-+|.++.+.
T Consensus 216 -tykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~---- 290 (521)
T KOG1230|consen 216 -TYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPS---- 290 (521)
T ss_pred -ceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCC----
Confidence 6699999863 3588999999999855599999998642110 01358999999983 12578999877
Q ss_pred CCCCCCCCCCCCcceEEEEecCCEEEEEcCcCC--------CCCCCCceEEEcCCCCCCceEEeccC
Q 042793 443 AGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVA--------GLHSATQLYLLDPTEEKPTWRILNVP 501 (545)
Q Consensus 443 ~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~~~v~~~d~~~~~~~W~~~~~~ 501 (545)
|..|.||.+.+.++..+++-+.|||.-. ...++|++|.||+. .++|...+..
T Consensus 291 -----g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt--~nrW~~~qlq 350 (521)
T KOG1230|consen 291 -----GVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLT--RNRWSEGQLQ 350 (521)
T ss_pred -----CCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecc--cchhhHhhhc
Confidence 6789999998888777889999999531 23468999999996 6789877553
No 20
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=3.7e-31 Score=268.95 Aligned_cols=241 Identities=34% Similarity=0.575 Sum_probs=208.0
Q ss_pred CCCCCccceeEEEEcCCEEEEEcCCCCCcccCc--EEEEecCCCCCceEecc-CCCCCCCCccceEEEEcCCEEEEEcCC
Q 042793 278 SPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLND--VFVLDLDAKPPTWREIS-GLAPPLPRSWHSSCTLDGTKLIVSGGC 354 (545)
Q Consensus 278 ~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~--~~~yd~~t~~~~W~~~~-~~~~~~~r~~~~~~~~~~~~iyv~GG~ 354 (545)
..|.+|++|+++.+ ++++|||||........+ +|++|..+. .|.... ....|.+|++|++++++ ++||+|||.
T Consensus 56 ~~p~~R~~hs~~~~-~~~~~vfGG~~~~~~~~~~dl~~~d~~~~--~w~~~~~~g~~p~~r~g~~~~~~~-~~l~lfGG~ 131 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLI-GNKLYVFGGYGSGDRLTDLDLYVLDLESQ--LWTKPAATGDEPSPRYGHSLSAVG-DKLYLFGGT 131 (482)
T ss_pred CCcchhhccceeEE-CCEEEEECCCCCCCccccceeEEeecCCc--ccccccccCCCCCcccceeEEEEC-CeEEEEccc
Confidence 46889999999988 679999999887665444 999999998 999665 33558899999999994 699999999
Q ss_pred CCCCCccCcEEEEecCCCCCceEEecCC-CCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceE
Q 042793 355 ADSGVLLSDTFLLDLSMEKPVWREIPVT-WTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWR 433 (545)
Q Consensus 355 ~~~~~~~~~~~~~d~~~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~ 433 (545)
......+++++.||+. +.+|..+... ..|++|.+|+++++++ +||||||...... ..+++|+||++ +.+|.
T Consensus 132 ~~~~~~~~~l~~~d~~--t~~W~~l~~~~~~P~~r~~Hs~~~~g~-~l~vfGG~~~~~~---~~ndl~i~d~~--~~~W~ 203 (482)
T KOG0379|consen 132 DKKYRNLNELHSLDLS--TRTWSLLSPTGDPPPPRAGHSATVVGT-KLVVFGGIGGTGD---SLNDLHIYDLE--TSTWS 203 (482)
T ss_pred cCCCCChhheEeccCC--CCcEEEecCcCCCCCCcccceEEEECC-EEEEECCccCccc---ceeeeeeeccc--cccce
Confidence 7656678899999955 6699988764 4599999999999997 9999999988764 37999999999 88899
Q ss_pred EeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCcee
Q 042793 434 CVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHST 513 (545)
Q Consensus 434 ~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~ 513 (545)
++... |..|.||.+|+++++ +++++||||.+.+...++|+|.||+. +.+|+.+...+..|.+|++|+.
T Consensus 204 ~~~~~---------g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l~D~~~ldl~--~~~W~~~~~~g~~p~~R~~h~~ 271 (482)
T KOG0379|consen 204 ELDTQ---------GEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYLNDVHILDLS--TWEWKLLPTGGDLPSPRSGHSL 271 (482)
T ss_pred ecccC---------CCCCCCCCCceEEEE-CCeEEEEeccccCCceecceEeeecc--cceeeeccccCCCCCCcceeee
Confidence 99877 788999999999998 89999999988667788999999997 6899998888999999999999
Q ss_pred EEeCCeeEEEEcCCCCccc-ccccceeeeec
Q 042793 514 CVVGGTRTIVLGGQTGEEW-MLSELHELSLV 543 (545)
Q Consensus 514 ~~~~~~~l~i~GG~~~~~~-~~~~~~~l~l~ 543 (545)
+.. +.+++|+||...... .+.++|.|++.
T Consensus 272 ~~~-~~~~~l~gG~~~~~~~~l~~~~~l~~~ 301 (482)
T KOG0379|consen 272 TVS-GDHLLLFGGGTDPKQEPLGDLYGLDLE 301 (482)
T ss_pred EEE-CCEEEEEcCCccccccccccccccccc
Confidence 955 899999999887543 68999999875
No 21
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=9.1e-31 Score=274.50 Aligned_cols=259 Identities=17% Similarity=0.220 Sum_probs=203.7
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCc-ccCcEEEEecCCC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQG-LLNDVFVLDLDAK 319 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~t~ 319 (545)
..+++.||.+ .....+..|+..+. +|..+. +++. +..|+++++ +++||++||..... ..+++++||+.++
T Consensus 251 ~~~~~~~g~~---~~~~~~~~~~~~~~--~~~~~~--~~~~-~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 321 (534)
T PHA03098 251 SIIYIHITMS---IFTYNYITNYSPLS--EINTII--DIHY-VYCFGSVVL-NNVIYFIGGMNKNNLSVNSVVSYDTKTK 321 (534)
T ss_pred cceEeecccc---hhhceeeecchhhh--hccccc--Cccc-cccceEEEE-CCEEEEECCCcCCCCeeccEEEEeCCCC
Confidence 3455656643 12334566777766 888664 3343 444666666 56999999987644 5679999999999
Q ss_pred CCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCc
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGR 399 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 399 (545)
+|..++++ |.+|..|+++++ ++++|++||.. .....+++++||+ .+++|+.+++ +|.+|.+|+++.+++
T Consensus 322 --~W~~~~~~--~~~R~~~~~~~~-~~~lyv~GG~~-~~~~~~~v~~yd~--~~~~W~~~~~--lp~~r~~~~~~~~~~- 390 (534)
T PHA03098 322 --SWNKVPEL--IYPRKNPGVTVF-NNRIYVIGGIY-NSISLNTVESWKP--GESKWREEPP--LIFPRYNPCVVNVNN- 390 (534)
T ss_pred --eeeECCCC--CcccccceEEEE-CCEEEEEeCCC-CCEecceEEEEcC--CCCceeeCCC--cCcCCccceEEEECC-
Confidence 99999988 788999999888 55999999986 3446788999995 4679999876 889999999998887
Q ss_pred EEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCC-
Q 042793 400 KILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLH- 478 (545)
Q Consensus 400 ~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~- 478 (545)
+||++||....+. ..+++++||+. +++|+.+..+ |.+|.+|+++.. +++|||+||.+....
T Consensus 391 ~iYv~GG~~~~~~---~~~~v~~yd~~--t~~W~~~~~~------------p~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 452 (534)
T PHA03098 391 LIYVIGGISKNDE---LLKTVECFSLN--TNKWSKGSPL------------PISHYGGCAIYH-DGKIYVIGGISYIDNI 452 (534)
T ss_pred EEEEECCcCCCCc---ccceEEEEeCC--CCeeeecCCC------------CccccCceEEEE-CCEEEEECCccCCCCC
Confidence 9999999765443 26889999999 8899998765 788888887776 999999999764322
Q ss_pred -CCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeecc
Q 042793 479 -SATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 479 -~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
..+.+++||+. +++|+.+ +.+|.+|..+++++. +++|||+||.+... ..+++++||+.+
T Consensus 453 ~~~~~v~~yd~~--~~~W~~~---~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~-~~~~v~~yd~~~ 512 (534)
T PHA03098 453 KVYNIVESYNPV--TNKWTEL---SSLNFPRINASLCIF-NNKIYVVGGDKYEY-YINEIEVYDDKT 512 (534)
T ss_pred cccceEEEecCC--CCceeeC---CCCCcccccceEEEE-CCEEEEEcCCcCCc-ccceeEEEeCCC
Confidence 25679999996 7899998 457778888888887 88999999988654 468999999875
No 22
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.98 E-value=1.3e-30 Score=259.81 Aligned_cols=257 Identities=21% Similarity=0.341 Sum_probs=189.9
Q ss_pred hhhcc--cCCcEEeccCCCCC-CCCCceeeEEECCEEEEEcCCCCC-----CCccCceEEEeCCCCCCceEEeccCCCCC
Q 042793 210 LTTLE--AATWRKLTVGGTVE-PSRCNFSACAVGNRVVLFGGEGVN-----MQPMNDTFVLDLNSSNPEWQHVHVSSPPP 281 (545)
Q Consensus 210 ~~~~~--~~~W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~-----~~~~~~~~~~d~~t~~~~W~~~~~~~~~~ 281 (545)
.||+. ++.|..++. +| ++|.++++++++++|||+||.... ...++++|+||+.++ +|+.++. .+|.
T Consensus 54 ~~d~~~~~~~W~~l~~---~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n--~W~~~~~-~~p~ 127 (376)
T PRK14131 54 KLDLNAPSKGWTKIAA---FPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN--SWQKLDT-RSPV 127 (376)
T ss_pred EEECCCCCCCeEECCc---CCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC--EEEeCCC-CCCC
Confidence 45554 578998864 33 479999999999999999997531 134689999999998 9999862 3467
Q ss_pred CccceeEEEEcCCEEEEEcCCCCC----------------------------------cccCcEEEEecCCCCCceEecc
Q 042793 282 GRWGHTLSCVNGSHLVVFGGCGRQ----------------------------------GLLNDVFVLDLDAKPPTWREIS 327 (545)
Q Consensus 282 ~r~~~~~~~~~~~~iyv~GG~~~~----------------------------------~~~~~~~~yd~~t~~~~W~~~~ 327 (545)
++.+|+++++.+++||++||.... ...+++++||+.++ +|+.++
T Consensus 128 ~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~--~W~~~~ 205 (376)
T PRK14131 128 GLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN--QWKNAG 205 (376)
T ss_pred cccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCC--eeeECC
Confidence 778888776446699999997531 02478999999999 999998
Q ss_pred CCCCCC-CCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCC--------cEEEEECC
Q 042793 328 GLAPPL-PRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLG--------HTLSVYGG 398 (545)
Q Consensus 328 ~~~~~~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~--------~~~~~~~~ 398 (545)
++ |. +|..|+++.+ +++|||+||....+....+++.|++++.+++|+.+.. +|.+|.+ +.++++++
T Consensus 206 ~~--p~~~~~~~a~v~~-~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~p~~~~~~~~~~~~~~~a~~~~~ 280 (376)
T PRK14131 206 ES--PFLGTAGSAVVIK-GNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD--LPPAPGGSSQEGVAGAFAGYSNG 280 (376)
T ss_pred cC--CCCCCCcceEEEE-CCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC--CCCCCcCCcCCccceEeceeECC
Confidence 87 54 6777777666 5699999997554445566777766677889999876 6665532 22455666
Q ss_pred cEEEEEcccCCCCCC-------------ccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCC
Q 042793 399 RKILMFGGLAKSGPL-------------RFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGG 465 (545)
Q Consensus 399 ~~lyi~GG~~~~~~~-------------~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~ 465 (545)
+||++||....... ......+.+||++ +++|+.+..+ |.+|..++++++ ++
T Consensus 281 -~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~--~~~W~~~~~l------------p~~r~~~~av~~-~~ 344 (376)
T PRK14131 281 -VLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALV--NGKWQKVGEL------------PQGLAYGVSVSW-NN 344 (376)
T ss_pred -EEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEec--CCcccccCcC------------CCCccceEEEEe-CC
Confidence 99999997642210 0001235578998 8899988765 889988876666 99
Q ss_pred EEEEEcCcCCCCCCCCceEEEcCCCCCCceEE
Q 042793 466 RILIFGGSVAGLHSATQLYLLDPTEEKPTWRI 497 (545)
Q Consensus 466 ~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~ 497 (545)
+|||+||........+++++|+++ .+.+..
T Consensus 345 ~iyv~GG~~~~~~~~~~v~~~~~~--~~~~~~ 374 (376)
T PRK14131 345 GVLLIGGETAGGKAVSDVTLLSWD--GKKLTV 374 (376)
T ss_pred EEEEEcCCCCCCcEeeeEEEEEEc--CCEEEE
Confidence 999999987655678899999996 445543
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.98 E-value=1.8e-30 Score=254.18 Aligned_cols=235 Identities=18% Similarity=0.276 Sum_probs=180.3
Q ss_pred CcEEeccCCCCCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCce----EEeccCCCCCCccceeEEEEc
Q 042793 217 TWRKLTVGGTVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEW----QHVHVSSPPPGRWGHTLSCVN 292 (545)
Q Consensus 217 ~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W----~~~~~~~~~~~r~~~~~~~~~ 292 (545)
+|..++. +|.+|..+++++++++||++||.+. ...++++++||+.++ +| +.+ +++|.+|..|++++++
T Consensus 52 ~W~~~~~---lp~~r~~~~~~~~~~~lyviGG~~~-~~~~~~v~~~d~~~~--~w~~~~~~~--~~lp~~~~~~~~~~~~ 123 (323)
T TIGR03548 52 KWVKDGQ---LPYEAAYGASVSVENGIYYIGGSNS-SERFSSVYRITLDES--KEELICETI--GNLPFTFENGSACYKD 123 (323)
T ss_pred eEEEccc---CCccccceEEEEECCEEEEEcCCCC-CCCceeEEEEEEcCC--ceeeeeeEc--CCCCcCccCceEEEEC
Confidence 6887753 7888988888999999999999754 346789999999887 77 544 4889999999988775
Q ss_pred CCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCC-CCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCC
Q 042793 293 GSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPP-LPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSM 371 (545)
Q Consensus 293 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~-~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 371 (545)
++|||+||.......+++++||+.++ +|+.++++ | .+|..|+++++ +++|||+||.+.. ...++++||+.
T Consensus 124 -~~iYv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~--p~~~r~~~~~~~~-~~~iYv~GG~~~~--~~~~~~~yd~~- 194 (323)
T TIGR03548 124 -GTLYVGGGNRNGKPSNKSYLFNLETQ--EWFELPDF--PGEPRVQPVCVKL-QNELYVFGGGSNI--AYTDGYKYSPK- 194 (323)
T ss_pred -CEEEEEeCcCCCccCceEEEEcCCCC--CeeECCCC--CCCCCCcceEEEE-CCEEEEEcCCCCc--cccceEEEecC-
Confidence 59999999865556899999999999 99999987 4 47888888777 4599999997532 34678999954
Q ss_pred CCCceEEecCC---CCCCCCCCcEEEEECCcEEEEEcccCCCCC----------------------------CccccCcE
Q 042793 372 EKPVWREIPVT---WTPPSRLGHTLSVYGGRKILMFGGLAKSGP----------------------------LRFRSSDV 420 (545)
Q Consensus 372 ~~~~W~~~~~~---~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~----------------------------~~~~~~~i 420 (545)
+++|+.++.. ..|.++.+++++++.+++||++||...... .....+++
T Consensus 195 -~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 273 (323)
T TIGR03548 195 -KNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKI 273 (323)
T ss_pred -CCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceE
Confidence 6699998752 234445566666665559999999864210 00013679
Q ss_pred EEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCce
Q 042793 421 FTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQL 483 (545)
Q Consensus 421 ~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v 483 (545)
++||+. +++|+.+..+ +..+|..++++++ +++||++||...+...++++
T Consensus 274 ~~yd~~--~~~W~~~~~~-----------p~~~r~~~~~~~~-~~~iyv~GG~~~pg~rt~~~ 322 (323)
T TIGR03548 274 LIYNVR--TGKWKSIGNS-----------PFFARCGAALLLT-GNNIFSINGELKPGVRTPDI 322 (323)
T ss_pred EEEECC--CCeeeEcccc-----------cccccCchheEEE-CCEEEEEeccccCCcCCcCc
Confidence 999999 8899999755 2257888877776 99999999987666555554
No 24
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=4.2e-29 Score=255.75 Aligned_cols=211 Identities=19% Similarity=0.267 Sum_probs=176.4
Q ss_pred eEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEe
Q 042793 236 ACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLD 315 (545)
Q Consensus 236 ~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 315 (545)
++..++.||++||.+. ....+.+++||+.++ +|..++ +|+.+|..++++++ +++||++||.+.. ++++.||
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~--~W~~~~--~m~~~r~~~~~v~~-~~~iYviGG~~~~---~sve~yd 337 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYISN--NWIPIP--PMNSPRLYASGVPA-NNKLYVVGGLPNP---TSVERWF 337 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCCC--EEEECC--CCCchhhcceEEEE-CCEEEEECCcCCC---CceEEEE
Confidence 4558999999999753 346678999999998 999876 89999999988877 4599999997532 6799999
Q ss_pred cCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEE
Q 042793 316 LDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSV 395 (545)
Q Consensus 316 ~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~ 395 (545)
+.++ +|+.+++| |.+|..|++++++ ++||++||.... .+.+++|| +.+++|+.+++ +|.+|..|++++
T Consensus 338 p~~n--~W~~~~~l--~~~r~~~~~~~~~-g~IYviGG~~~~---~~~ve~yd--p~~~~W~~~~~--m~~~r~~~~~~~ 405 (480)
T PHA02790 338 HGDA--AWVNMPSL--LKPRCNPAVASIN-NVIYVIGGHSET---DTTTEYLL--PNHDQWQFGPS--TYYPHYKSCALV 405 (480)
T ss_pred CCCC--eEEECCCC--CCCCcccEEEEEC-CEEEEecCcCCC---CccEEEEe--CCCCEEEeCCC--CCCccccceEEE
Confidence 9999 99999998 8899999998885 599999997532 36789999 55779999876 899999999999
Q ss_pred ECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCC
Q 042793 396 YGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVA 475 (545)
Q Consensus 396 ~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~ 475 (545)
+++ +||++||. +..||++ +++|+.++.+ |.+|..+.++++ +++|||+||.+.
T Consensus 406 ~~~-~IYv~GG~------------~e~ydp~--~~~W~~~~~m------------~~~r~~~~~~v~-~~~IYviGG~~~ 457 (480)
T PHA02790 406 FGR-RLFLVGRN------------AEFYCES--SNTWTLIDDP------------IYPRDNPELIIV-DNKLLLIGGFYR 457 (480)
T ss_pred ECC-EEEEECCc------------eEEecCC--CCcEeEcCCC------------CCCccccEEEEE-CCEEEEECCcCC
Confidence 988 99999983 3468998 8999999866 788888877776 999999999874
Q ss_pred CCCCCCceEEEcCCCCCCceEEe
Q 042793 476 GLHSATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 476 ~~~~~~~v~~~d~~~~~~~W~~~ 498 (545)
.. ..+.+++||++ +++|+..
T Consensus 458 ~~-~~~~ve~Yd~~--~~~W~~~ 477 (480)
T PHA02790 458 GS-YIDTIEVYNNR--TYSWNIW 477 (480)
T ss_pred Cc-ccceEEEEECC--CCeEEec
Confidence 33 35789999996 7899876
No 25
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=1.2e-27 Score=245.17 Aligned_cols=202 Identities=16% Similarity=0.296 Sum_probs=170.2
Q ss_pred cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCC
Q 042793 292 NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSM 371 (545)
Q Consensus 292 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 371 (545)
.++.||++||.+.....+++++||+.++ +|..+++| +.+|..++++++ +++||++||.+. .++++.|| +
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~--~W~~~~~m--~~~r~~~~~v~~-~~~iYviGG~~~----~~sve~yd--p 338 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISN--NWIPIPPM--NSPRLYASGVPA-NNKLYVVGGLPN----PTSVERWF--H 338 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCC--EEEECCCC--CchhhcceEEEE-CCEEEEECCcCC----CCceEEEE--C
Confidence 3569999999876667788999999999 99999998 889998988888 559999999742 25689999 4
Q ss_pred CCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCC
Q 042793 372 EKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAP 451 (545)
Q Consensus 372 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p 451 (545)
.+++|..+++ +|.+|..|+++++++ +||++||.... .+.+..||+. +++|+.++.+ |
T Consensus 339 ~~n~W~~~~~--l~~~r~~~~~~~~~g-~IYviGG~~~~------~~~ve~ydp~--~~~W~~~~~m------------~ 395 (480)
T PHA02790 339 GDAAWVNMPS--LLKPRCNPAVASINN-VIYVIGGHSET------DTTTEYLLPN--HDQWQFGPST------------Y 395 (480)
T ss_pred CCCeEEECCC--CCCCCcccEEEEECC-EEEEecCcCCC------CccEEEEeCC--CCEEEeCCCC------------C
Confidence 5779999976 999999999999988 99999997532 2568889999 8899999776 7
Q ss_pred CCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcc
Q 042793 452 PPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEE 531 (545)
Q Consensus 452 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~ 531 (545)
.+|..|+++++ +++|||+||. +.+||++ +++|+.+ +.+|.+|..++++++ +++||++||++...
T Consensus 396 ~~r~~~~~~~~-~~~IYv~GG~---------~e~ydp~--~~~W~~~---~~m~~~r~~~~~~v~-~~~IYviGG~~~~~ 459 (480)
T PHA02790 396 YPHYKSCALVF-GRRLFLVGRN---------AEFYCES--SNTWTLI---DDPIYPRDNPELIIV-DNKLLLIGGFYRGS 459 (480)
T ss_pred CccccceEEEE-CCEEEEECCc---------eEEecCC--CCcEeEc---CCCCCCccccEEEEE-CCEEEEECCcCCCc
Confidence 88888877776 9999999983 5789996 7899998 467888999988888 88999999987543
Q ss_pred cccccceeeeecc
Q 042793 532 WMLSELHELSLVS 544 (545)
Q Consensus 532 ~~~~~~~~l~l~~ 544 (545)
.++.+++||+.+
T Consensus 460 -~~~~ve~Yd~~~ 471 (480)
T PHA02790 460 -YIDTIEVYNNRT 471 (480)
T ss_pred -ccceEEEEECCC
Confidence 468899999875
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.3e-27 Score=225.77 Aligned_cols=253 Identities=26% Similarity=0.470 Sum_probs=201.0
Q ss_pred ceEEecc--CCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEecc-CCCCCCCCccceEEEEcCC
Q 042793 270 EWQHVHV--SSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREIS-GLAPPLPRSWHSSCTLDGT 346 (545)
Q Consensus 270 ~W~~~~~--~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~-~~~~~~~r~~~~~~~~~~~ 346 (545)
+|+++.. .+.|.||.+|.++++. +-|+||||- +++..+++++|+..++ +|..-. ....|.+...|.. +++|+
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaik-ELiviFGGG-NEGiiDELHvYNTatn--qWf~PavrGDiPpgcAA~Gf-vcdGt 92 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIK-ELIVIFGGG-NEGIIDELHVYNTATN--QWFAPAVRGDIPPGCAAFGF-VCDGT 92 (830)
T ss_pred ceEEEecccCCCCCccccchheeee-eeEEEecCC-cccchhhhhhhccccc--eeecchhcCCCCCchhhcce-EecCc
Confidence 7988764 4678899999999884 478899984 4457889999999999 998432 2234666666655 55688
Q ss_pred EEEEEcCCCCCCCccCcEEEEecCCCCCceEEecC-----CCCCCCCCCcEEEEECCcEEEEEcccCCCC-----CCccc
Q 042793 347 KLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPV-----TWTPPSRLGHTLSVYGGRKILMFGGLAKSG-----PLRFR 416 (545)
Q Consensus 347 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~-----~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~-----~~~~~ 416 (545)
+||+|||+.+-+.+.||+|.+. ...+.|.++.. +..|.||.+|+...+++ +-|+|||..++. ..+.+
T Consensus 93 rilvFGGMvEYGkYsNdLYELQ--asRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gn-KcYlFGGLaNdseDpknNvPrY 169 (830)
T KOG4152|consen 93 RILVFGGMVEYGKYSNDLYELQ--ASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGN-KCYLFGGLANDSEDPKNNVPRY 169 (830)
T ss_pred eEEEEccEeeeccccchHHHhh--hhhhhHhhcCCCCCCCCCCCCCccCceeEEecc-EeEEeccccccccCcccccchh
Confidence 9999999998899999998877 66889998854 35778999999999987 999999987643 33467
Q ss_pred cCcEEEEeCCCC--CCceEEeecCCCCCCCCCCCCCCCCCcceEEEEec-----CCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 417 SSDVFTMDLSEE--EPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLP-----GGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 417 ~~~i~~~d~~~~--~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~-----~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
++|+|++++... -..|...-.. |..|.+|-+|.++++. ..++||+||.+ +....|+|.+|++
T Consensus 170 LnDlY~leL~~Gsgvv~W~ip~t~---------Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~--G~RLgDLW~Ldl~ 238 (830)
T KOG4152|consen 170 LNDLYILELRPGSGVVAWDIPITY---------GVLPPPRESHTAVIYTEKDSKKSKMVVYGGMS--GCRLGDLWTLDLD 238 (830)
T ss_pred hcceEEEEeccCCceEEEeccccc---------CCCCCCcccceeEEEEeccCCcceEEEEcccc--cccccceeEEecc
Confidence 899999998732 3468876554 7889999999999984 24799999986 4468999999996
Q ss_pred CCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCc-------------ccccccceeeeecc
Q 042793 490 EEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGE-------------EWMLSELHELSLVS 544 (545)
Q Consensus 490 ~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~-------------~~~~~~~~~l~l~~ 544 (545)
+..|.+....|-.|.+|.-|+++++ ++++|||||.-+. =...+.+-++||+.
T Consensus 239 --Tl~W~kp~~~G~~PlPRSLHsa~~I-GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt 303 (830)
T KOG4152|consen 239 --TLTWNKPSLSGVAPLPRSLHSATTI-GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDT 303 (830)
T ss_pred --eeecccccccCCCCCCcccccceee-cceeEEecceeeeeccccccccccceeeeccceeeeeecc
Confidence 7899999999999999999999999 8999999997531 12456666666653
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.88 E-value=1.2e-20 Score=172.87 Aligned_cols=286 Identities=22% Similarity=0.376 Sum_probs=206.6
Q ss_pred CCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCC-CCccceeEEEEcCCEEEEEcCCCCC
Q 042793 227 VEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPP-PGRWGHTLSCVNGSHLVVFGGCGRQ 305 (545)
Q Consensus 227 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~-~~r~~~~~~~~~~~~iyv~GG~~~~ 305 (545)
.|.+--.-+.+.+++.+||-=|.... ..|.+|+......|+.+. ..| .+|.+.+++++ +++||||||....
T Consensus 33 lPvg~KnG~Ga~ig~~~YVGLGs~G~-----afy~ldL~~~~k~W~~~a--~FpG~~rnqa~~a~~-~~kLyvFgG~Gk~ 104 (381)
T COG3055 33 LPVGFKNGAGALIGDTVYVGLGSAGT-----AFYVLDLKKPGKGWTKIA--DFPGGARNQAVAAVI-GGKLYVFGGYGKS 104 (381)
T ss_pred CCccccccccceecceEEEEeccCCc-----cceehhhhcCCCCceEcc--cCCCcccccchheee-CCeEEEeeccccC
Confidence 34444445677889999997664332 788999887667999876 444 46887777766 4599999998643
Q ss_pred c-----ccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCC-----------------------
Q 042793 306 G-----LLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADS----------------------- 357 (545)
Q Consensus 306 ~-----~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~----------------------- 357 (545)
. ..+++|.|||.++ +|.++... .|....+++++.+.+.++|++||.+..
T Consensus 105 ~~~~~~~~nd~Y~y~p~~n--sW~kl~t~-sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~ 181 (381)
T COG3055 105 VSSSPQVFNDAYRYDPSTN--SWHKLDTR-SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII 181 (381)
T ss_pred CCCCceEeeeeEEecCCCC--hhheeccc-cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence 3 5799999999999 99999874 366778888888887799999997420
Q ss_pred ----------CCccCcEEEEecCCCCCceEEecCCCCCC-CCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 358 ----------GVLLSDTFLLDLSMEKPVWREIPVTWTPP-SRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 358 ----------~~~~~~~~~~d~~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.....++..|+ +.+++|+.+.. .|. ++++ ++++..++++.++-|.-..+. ++..+++++..
T Consensus 182 ~~yf~~~~~dy~~n~ev~sy~--p~~n~W~~~G~--~pf~~~aG-sa~~~~~n~~~lInGEiKpGL---Rt~~~k~~~~~ 253 (381)
T COG3055 182 AHYFDKKAEDYFFNKEVLSYD--PSTNQWRNLGE--NPFYGNAG-SAVVIKGNKLTLINGEIKPGL---RTAEVKQADFG 253 (381)
T ss_pred HHHhCCCHHHhcccccccccc--cccchhhhcCc--CcccCccC-cceeecCCeEEEEcceecCCc---cccceeEEEec
Confidence 01234577788 55779988753 343 4555 455666668988888777665 36788888887
Q ss_pred CCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCC------------------CCCCCCceEEEcC
Q 042793 427 EEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVA------------------GLHSATQLYLLDP 488 (545)
Q Consensus 427 ~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~------------------~~~~~~~v~~~d~ 488 (545)
.+..+|..+..++.+ .+..+....++++-.. ++.++|.||-+. .....++||.||
T Consensus 254 ~~~~~w~~l~~lp~~-----~~~~~eGvAGaf~G~s-~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d- 326 (381)
T COG3055 254 GDNLKWLKLSDLPAP-----IGSNKEGVAGAFSGKS-NGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD- 326 (381)
T ss_pred cCceeeeeccCCCCC-----CCCCccccceecccee-CCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc-
Confidence 667899999776311 1222233344444444 788999999542 112367899999
Q ss_pred CCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeeccC
Q 042793 489 TEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLVSK 545 (545)
Q Consensus 489 ~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~~~ 545 (545)
++.|+.+ +++|.++.+..++.. ++.||++||.+..+..+..++.+.+..+
T Consensus 327 ---~g~Wk~~---GeLp~~l~YG~s~~~-nn~vl~IGGE~~~Gka~~~v~~l~~~gk 376 (381)
T COG3055 327 ---NGSWKIV---GELPQGLAYGVSLSY-NNKVLLIGGETSGGKATTRVYSLSWDGK 376 (381)
T ss_pred ---CCceeee---cccCCCccceEEEec-CCcEEEEccccCCCeeeeeEEEEEEcCc
Confidence 4689999 889987776655554 8999999999999888999999887653
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.81 E-value=5.2e-18 Score=155.59 Aligned_cols=246 Identities=23% Similarity=0.435 Sum_probs=182.4
Q ss_pred cCCcEEeccCCCCCCCCCceeeEEECCEEEEEcCCCCCC----CccCceEEEeCCCCCCceEEeccCCCCCCccceeEEE
Q 042793 215 AATWRKLTVGGTVEPSRCNFSACAVGNRVVLFGGEGVNM----QPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSC 290 (545)
Q Consensus 215 ~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~----~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~ 290 (545)
+..|.++.. -+-.+|....+++++++||||||..... +.++|+|+||+.++ +|+++. ...|..-.+++++.
T Consensus 69 ~k~W~~~a~--FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~n--sW~kl~-t~sP~gl~G~~~~~ 143 (381)
T COG3055 69 GKGWTKIAD--FPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTN--SWHKLD-TRSPTGLVGASTFS 143 (381)
T ss_pred CCCceEccc--CCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCC--hhheec-cccccccccceeEe
Confidence 467998864 2445799999999999999999965432 35799999999999 999985 33456678888888
Q ss_pred EcCCEEEEEcCCCCC----------------------------------cccCcEEEEecCCCCCceEeccCCCCCCCCc
Q 042793 291 VNGSHLVVFGGCGRQ----------------------------------GLLNDVFVLDLDAKPPTWREISGLAPPLPRS 336 (545)
Q Consensus 291 ~~~~~iyv~GG~~~~----------------------------------~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~ 336 (545)
+.+.+||++||.+.. .....+..|||.++ .|+.+... +-.+++
T Consensus 144 ~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n--~W~~~G~~-pf~~~a 220 (381)
T COG3055 144 LNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTN--QWRNLGEN-PFYGNA 220 (381)
T ss_pred cCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccc--hhhhcCcC-cccCcc
Confidence 877799999997421 13567999999999 99987743 245666
Q ss_pred cceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCC-------CCcEEEEECCcEEEEEcccCC
Q 042793 337 WHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSR-------LGHTLSVYGGRKILMFGGLAK 409 (545)
Q Consensus 337 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r-------~~~~~~~~~~~~lyi~GG~~~ 409 (545)
+ ++++..++++.++-|.-.++.....++++++..+..+|.++.. +|.+. .++-.-.. ++.+.+.||-.-
T Consensus 221 G-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~--lp~~~~~~~eGvAGaf~G~s-~~~~lv~GGAnF 296 (381)
T COG3055 221 G-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSD--LPAPIGSNKEGVAGAFSGKS-NGEVLVAGGANF 296 (381)
T ss_pred C-cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccC--CCCCCCCCccccceecccee-CCeEEEecCCCC
Confidence 6 4456667789999998777877888999998877889999976 33332 22222222 347888888542
Q ss_pred CC---------------CCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcC
Q 042793 410 SG---------------PLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSV 474 (545)
Q Consensus 410 ~~---------------~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~ 474 (545)
.+ ......++||.|| .+.|+.+.. +|.+....+++.. +++||++||.+
T Consensus 297 ~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d----~g~Wk~~Ge------------Lp~~l~YG~s~~~-nn~vl~IGGE~ 359 (381)
T COG3055 297 PGALKAYKNGKFYAHEGLSKSWNSEVYIFD----NGSWKIVGE------------LPQGLAYGVSLSY-NNKVLLIGGET 359 (381)
T ss_pred hhHHHHHHhcccccccchhhhhhceEEEEc----CCceeeecc------------cCCCccceEEEec-CCcEEEEcccc
Confidence 21 1123367899998 568998854 4888888888887 89999999999
Q ss_pred CCCCCCCceEEEcCC
Q 042793 475 AGLHSATQLYLLDPT 489 (545)
Q Consensus 475 ~~~~~~~~v~~~d~~ 489 (545)
.+...+.+++.+-..
T Consensus 360 ~~Gka~~~v~~l~~~ 374 (381)
T COG3055 360 SGGKATTRVYSLSWD 374 (381)
T ss_pred CCCeeeeeEEEEEEc
Confidence 888877777776553
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.58 E-value=4e-16 Score=148.30 Aligned_cols=308 Identities=18% Similarity=0.296 Sum_probs=192.8
Q ss_pred cCCcEEeccCC-------CCCCCCCceeeEEECC--EEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCC-CCCCcc
Q 042793 215 AATWRKLTVGG-------TVEPSRCNFSACAVGN--RVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSS-PPPGRW 284 (545)
Q Consensus 215 ~~~W~~~~~~~-------~~p~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~-~~~~r~ 284 (545)
...|.+++... .-|..|.+|.++...+ .||++||.++ -+.+.|+|.|+...+ .|.-+.... .|..|.
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG-~~~l~DFW~Y~v~e~--~W~~iN~~t~~PG~Rs 314 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG-TQDLADFWAYSVKEN--QWTCINRDTEGPGARS 314 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCccc-chhHHHHHhhcCCcc--eeEEeecCCCCCcchh
Confidence 45676665433 3577899999998865 8999999864 367889999999887 999876543 788999
Q ss_pred ceeEEEE-cCCEEEEEcCCCCCc------ccCcEEEEecCCCCCceEeccCC----CCCCCCccceEEEEcCCE--EEEE
Q 042793 285 GHTLSCV-NGSHLVVFGGCGRQG------LLNDVFVLDLDAKPPTWREISGL----APPLPRSWHSSCTLDGTK--LIVS 351 (545)
Q Consensus 285 ~~~~~~~-~~~~iyv~GG~~~~~------~~~~~~~yd~~t~~~~W~~~~~~----~~~~~r~~~~~~~~~~~~--iyv~ 351 (545)
.|.++.. ...|+|+.|-+-+.. .-.|+|+||..++ .|..+.-. ..|...+.|.+++.. ++ +||+
T Consensus 315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~--~W~~ls~dt~~dGGP~~vfDHqM~Vd~-~k~~iyVf 391 (723)
T KOG2437|consen 315 CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTN--TWMLLSEDTAADGGPKLVFDHQMCVDS-EKHMIYVF 391 (723)
T ss_pred hhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCc--eeEEecccccccCCcceeecceeeEec-CcceEEEe
Confidence 9998753 224899999764322 4578999999999 99976521 347888999998874 35 9999
Q ss_pred cCCCCCC--CccCcEEEEecCCCCCceEEecCC--------CCCCCCCCcEEEEEC-CcEEEEEcccCCCCCCccccCcE
Q 042793 352 GGCADSG--VLLSDTFLLDLSMEKPVWREIPVT--------WTPPSRLGHTLSVYG-GRKILMFGGLAKSGPLRFRSSDV 420 (545)
Q Consensus 352 GG~~~~~--~~~~~~~~~d~~~~~~~W~~~~~~--------~~p~~r~~~~~~~~~-~~~lyi~GG~~~~~~~~~~~~~i 420 (545)
||+.... ..+.-+|.||.. ...|..+... .....|.+|++-... ++.+|++||...... ++-.
T Consensus 392 GGr~~~~~e~~f~GLYaf~~~--~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~E----l~L~ 465 (723)
T KOG2437|consen 392 GGRILTCNEPQFSGLYAFNCQ--CQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTE----LNLF 465 (723)
T ss_pred cCeeccCCCccccceEEEecC--CccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceE----Eeeh
Confidence 9985432 356779999954 5588755321 123358888875553 458999999765443 3444
Q ss_pred EEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEE-ecCCEEEEEcCcCCC-----CCCCCceEEEcCCCCCCc
Q 042793 421 FTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVS-LPGGRILIFGGSVAG-----LHSATQLYLLDPTEEKPT 494 (545)
Q Consensus 421 ~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~-~~~~~l~v~GG~~~~-----~~~~~~v~~~d~~~~~~~ 494 (545)
+.||+..++. ..+... ..++....|.+-+..-++. -....|.+.-|.... ....+.+|+|++. ++.
T Consensus 466 f~y~I~~E~~--~~~s~~----~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~--~~~ 537 (723)
T KOG2437|consen 466 FSYDIDSEHV--DIISDG----TKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIV--RNS 537 (723)
T ss_pred hcceeccccc--hhhhcc----CcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEec--ccc
Confidence 4555442121 111110 0011111222221111111 113446655553311 1235778888875 456
Q ss_pred eEEeccC---------------------CCCCCCCCCceeEEeC-CeeEEEEcCCCCc----ccccccceeeee
Q 042793 495 WRILNVP---------------------GRPPRFAWGHSTCVVG-GTRTIVLGGQTGE----EWMLSELHELSL 542 (545)
Q Consensus 495 W~~~~~~---------------------~~~p~~r~~~~~~~~~-~~~l~i~GG~~~~----~~~~~~~~~l~l 542 (545)
|..+... -..|.+|.+|+.++.- .+-+|.+||..+. ...++|.|.++|
T Consensus 538 w~cI~~I~~~~~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I 611 (723)
T KOG2437|consen 538 WSCIYKIDQAAKDNDTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKI 611 (723)
T ss_pred hhhHhhhHHhhccCCceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhh
Confidence 7665321 1245677777766532 3557999997652 245677777665
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.40 E-value=2.3e-13 Score=129.80 Aligned_cols=210 Identities=20% Similarity=0.310 Sum_probs=144.7
Q ss_pred ceEEeccC--------CCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCC-CCCCCCccce
Q 042793 270 EWQHVHVS--------SPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGL-APPLPRSWHS 339 (545)
Q Consensus 270 ~W~~~~~~--------~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~-~~~~~r~~~~ 339 (545)
.|.+++.. .-|..|.+|.++.- .++.||++||+++...+.|.|.|+...+ .|+.+... ..|..|..|-
T Consensus 240 ~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~--~W~~iN~~t~~PG~RsCHR 317 (723)
T KOG2437|consen 240 RWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKEN--QWTCINRDTEGPGARSCHR 317 (723)
T ss_pred cccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcc--eeEEeecCCCCCcchhhhh
Confidence 78776532 24678999999864 3359999999999989999999999999 99988744 3688999998
Q ss_pred EEEE-cCCEEEEEcCCCCC-----CCccCcEEEEecCCCCCceEEecC----CCCCCCCCCcEEEEECCcE--EEEEccc
Q 042793 340 SCTL-DGTKLIVSGGCADS-----GVLLSDTFLLDLSMEKPVWREIPV----TWTPPSRLGHTLSVYGGRK--ILMFGGL 407 (545)
Q Consensus 340 ~~~~-~~~~iyv~GG~~~~-----~~~~~~~~~~d~~~~~~~W~~~~~----~~~p~~r~~~~~~~~~~~~--lyi~GG~ 407 (545)
++.- ...++|+.|-+-+. .....|+|+||++ ++.|..+.- .+-|...+.|.|++.++ + +||+||.
T Consensus 318 MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~--~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~-k~~iyVfGGr 394 (723)
T KOG2437|consen 318 MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDID--TNTWMLLSEDTAADGGPKLVFDHQMCVDSE-KHMIYVFGGR 394 (723)
T ss_pred hhhhhhHhHHhhhhhccccccccccccccceEEEecC--CceeEEecccccccCCcceeecceeeEecC-cceEEEecCe
Confidence 8654 12389999876432 1345689999976 559988753 25677889999998876 5 9999997
Q ss_pred CCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEec-CCEEEEEcCcCCCCCCCCceEEE
Q 042793 408 AKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLP-GGRILIFGGSVAGLHSATQLYLL 486 (545)
Q Consensus 408 ~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~v~~~ 486 (545)
.-.... .....+|.||.. ...|..+...-- ...+--+--..|.+|++-... +..+|++||... ...++-.+.|
T Consensus 395 ~~~~~e-~~f~GLYaf~~~--~~~w~~l~e~~~--~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s-~~El~L~f~y 468 (723)
T KOG2437|consen 395 ILTCNE-PQFSGLYAFNCQ--CQTWKLLREDSC--NAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRS-KTELNLFFSY 468 (723)
T ss_pred eccCCC-ccccceEEEecC--CccHHHHHHHHh--hcCcchhHHHHHHHHHHHhcCCCCeEEeccCccc-ceEEeehhcc
Confidence 643221 126889999998 778876643200 000000112345667665554 456889888653 2234556677
Q ss_pred cCCC
Q 042793 487 DPTE 490 (545)
Q Consensus 487 d~~~ 490 (545)
|+..
T Consensus 469 ~I~~ 472 (723)
T KOG2437|consen 469 DIDS 472 (723)
T ss_pred eecc
Confidence 7653
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.16 E-value=9e-11 Score=79.75 Aligned_cols=50 Identities=28% Similarity=0.475 Sum_probs=45.2
Q ss_pred CCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCc
Q 042793 230 SRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGR 283 (545)
Q Consensus 230 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r 283 (545)
||.+|++++++++|||+||.......++++++||+.++ +|++++ +||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~--~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETN--TWEQLP--PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCC--cEEECC--CCCCCC
Confidence 58899999999999999998765678899999999999 999986 888887
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.14 E-value=1.2e-10 Score=79.06 Aligned_cols=49 Identities=37% Similarity=0.717 Sum_probs=43.3
Q ss_pred CccceeEEEEcCCEEEEEcCCCC-CcccCcEEEEecCCCCCceEeccCCCCCCCC
Q 042793 282 GRWGHTLSCVNGSHLVVFGGCGR-QGLLNDVFVLDLDAKPPTWREISGLAPPLPR 335 (545)
Q Consensus 282 ~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r 335 (545)
||.+|+++++++ +|||+||... ....+++++||++|+ +|+.+++| |.||
T Consensus 1 pR~~~s~v~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~m--p~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGG-KIYVFGGYDNSGKYSNDVERYDPETN--TWEQLPPM--PTPR 50 (50)
T ss_pred CCccCEEEEECC-EEEEECCCCCCCCccccEEEEcCCCC--cEEECCCC--CCCC
Confidence 688999988854 9999999988 568899999999999 99999998 6666
No 33
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=99.00 E-value=2.4e-09 Score=85.75 Aligned_cols=79 Identities=28% Similarity=0.281 Sum_probs=71.3
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
++.+|++|+++..+...+ ..+...+.+.+++..+..+..++..+++||+.+|+.+++.|+.+++|++.+++
T Consensus 26 ~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~i 96 (104)
T PF13426_consen 26 YSREELIGKSISDFFPEE---------DRPEFEEQIERALEEGGSWSGEVRLRRKDGETFWVEVSASPIRDEDGEITGII 96 (104)
T ss_dssp S-HHHHTTSBGGGGCSTT---------SCHHHHHHHHHHHHHTSSEEEEEEEEETTSEEEEEEEEEEEEEETTSSEEEEE
T ss_pred cCHHHHcCCCcccccCcc---------cchhhHHHHHHHHhcCCceeEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEE
Confidence 577899999987777655 67888899999999999999999999999999999999999999999999999
Q ss_pred EEeeeeee
Q 042793 82 GIQFFTEA 89 (545)
Q Consensus 82 ~~~~Dite 89 (545)
++++||||
T Consensus 97 ~~~~DiTe 104 (104)
T PF13426_consen 97 GIFRDITE 104 (104)
T ss_dssp EEEEEEHH
T ss_pred EEEEECCC
Confidence 99999996
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.96 E-value=1.7e-09 Score=72.90 Aligned_cols=48 Identities=35% Similarity=0.762 Sum_probs=41.9
Q ss_pred CCEEEEEcCCC-CCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE
Q 042793 240 GNRVVLFGGEG-VNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV 291 (545)
Q Consensus 240 ~~~lyv~GG~~-~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~ 291 (545)
+++||||||.+ .....++++|+||+.+. +|+++ ..+|.||.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~--~W~~~--~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTN--TWTRI--GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCC--EEEEC--CCCCCCccceEEEEC
Confidence 57999999987 45678899999999998 99988 488999999999863
No 35
>PLN02772 guanylate kinase
Probab=98.95 E-value=4.8e-09 Score=101.31 Aligned_cols=89 Identities=20% Similarity=0.353 Sum_probs=78.5
Q ss_pred CCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCC
Q 042793 450 APPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTG 529 (545)
Q Consensus 450 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~ 529 (545)
-+.++..++++++ ++++||+||.+......+.+++||.. +.+|......|..|.+|-+|++|++.+++|+|+++-..
T Consensus 21 ~~~~~~~~tav~i-gdk~yv~GG~~d~~~~~~~v~i~D~~--t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~ 97 (398)
T PLN02772 21 GVKPKNRETSVTI-GDKTYVIGGNHEGNTLSIGVQILDKI--TNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA 97 (398)
T ss_pred cCCCCCcceeEEE-CCEEEEEcccCCCccccceEEEEECC--CCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC
Confidence 4668888999998 99999999987655467999999996 78999999999999999999999999999999998777
Q ss_pred cccccccceeeeecc
Q 042793 530 EEWMLSELHELSLVS 544 (545)
Q Consensus 530 ~~~~~~~~~~l~l~~ 544 (545)
.+ +++|.|.++.
T Consensus 98 ~~---~~~w~l~~~t 109 (398)
T PLN02772 98 PD---DSIWFLEVDT 109 (398)
T ss_pred Cc---cceEEEEcCC
Confidence 65 7899998864
No 36
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.92 E-value=2.8e-09 Score=71.86 Aligned_cols=47 Identities=49% Similarity=0.856 Sum_probs=40.9
Q ss_pred CCEEEEEcCCC--CCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEE
Q 042793 293 GSHLVVFGGCG--RQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL 343 (545)
Q Consensus 293 ~~~iyv~GG~~--~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~ 343 (545)
+++||||||.+ ....++++|+||+.++ +|++++++ |.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~--~W~~~~~~--P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTN--TWTRIGDL--PPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCC--EEEECCCC--CCCccceEEEEC
Confidence 45899999998 4558899999999999 99999765 899999998763
No 37
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.88 E-value=2.1e-09 Score=72.69 Aligned_cols=46 Identities=28% Similarity=0.744 Sum_probs=30.9
Q ss_pred CccceeEEEEcCCEEEEEcCCCCC-cccCcEEEEecCCCCCceEeccCC
Q 042793 282 GRWGHTLSCVNGSHLVVFGGCGRQ-GLLNDVFVLDLDAKPPTWREISGL 329 (545)
Q Consensus 282 ~r~~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~t~~~~W~~~~~~ 329 (545)
||++|+++.+.+++||||||.+.. ..++++|+||+.++ +|++++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~--~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETN--TWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTT--EEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCC--EEEECCCC
Confidence 699999998866799999999876 48999999999999 99999766
No 38
>PLN02772 guanylate kinase
Probab=98.87 E-value=1.8e-08 Score=97.43 Aligned_cols=88 Identities=15% Similarity=0.279 Sum_probs=74.6
Q ss_pred CCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEecc-CCCCCCccceeEEEEcCCEEEEEcCCCCCc
Q 042793 228 EPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHV-SSPPPGRWGHTLSCVNGSHLVVFGGCGRQG 306 (545)
Q Consensus 228 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~-~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~ 306 (545)
+.++.+++++.+++++||+||.+.....++.+++||..|+ +|..... ...|.||.+|+++++++++|+|+++.....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~--~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~ 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITN--NWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCC--cEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc
Confidence 4578899999999999999997665557899999999999 9998654 357889999999999888999999876543
Q ss_pred ccCcEEEEecCCC
Q 042793 307 LLNDVFVLDLDAK 319 (545)
Q Consensus 307 ~~~~~~~yd~~t~ 319 (545)
+++|.+.+.|.
T Consensus 100 --~~~w~l~~~t~ 110 (398)
T PLN02772 100 --DSIWFLEVDTP 110 (398)
T ss_pred --cceEEEEcCCH
Confidence 67899888775
No 39
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.82 E-value=4.6e-09 Score=70.36 Aligned_cols=45 Identities=33% Similarity=0.557 Sum_probs=39.7
Q ss_pred CccceeEEEEcCCEEEEEcCCCC-CcccCcEEEEecCCCCCceEeccCC
Q 042793 282 GRWGHTLSCVNGSHLVVFGGCGR-QGLLNDVFVLDLDAKPPTWREISGL 329 (545)
Q Consensus 282 ~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~t~~~~W~~~~~~ 329 (545)
||.+|+++++ +++|||+||... ...++++++||+.++ +|+.+++|
T Consensus 1 pR~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVV-GNKIYVIGGYDGNNQPTNSVEVYDPETN--TWEELPPM 46 (47)
T ss_dssp -BBSEEEEEE-TTEEEEEEEBESTSSBEEEEEEEETTTT--EEEEEEEE
T ss_pred CCccCEEEEE-CCEEEEEeeecccCceeeeEEEEeCCCC--EEEEcCCC
Confidence 6889999888 459999999988 568999999999999 99999887
No 40
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.80 E-value=5.5e-09 Score=69.97 Aligned_cols=44 Identities=32% Similarity=0.572 Sum_probs=40.0
Q ss_pred CCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEec
Q 042793 230 SRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVH 275 (545)
Q Consensus 230 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~ 275 (545)
||.+|++++++++|||+||.+.....++++++||+.++ +|+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETN--TWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTT--EEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCC--EEEEcC
Confidence 58899999999999999999876788999999999999 999876
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.80 E-value=5.9e-09 Score=70.47 Aligned_cols=47 Identities=30% Similarity=0.698 Sum_probs=31.5
Q ss_pred CCCceeeEEE-CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCC
Q 042793 230 SRCNFSACAV-GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPP 280 (545)
Q Consensus 230 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~ 280 (545)
||.+|+++.+ +++||||||.+.+...++++|+||+.++ +|++++ ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~--~W~~~~--~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETN--TWTRLP--SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTT--EEEE----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCC--EEEECC--CCC
Confidence 6899999999 5899999999877789999999999998 999884 555
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.78 E-value=1.9e-08 Score=67.75 Aligned_cols=44 Identities=25% Similarity=0.546 Sum_probs=39.2
Q ss_pred CCCceeeEEECCEEEEEcCC--CCCCCccCceEEEeCCCCCCceEEec
Q 042793 230 SRCNFSACAVGNRVVLFGGE--GVNMQPMNDTFVLDLNSSNPEWQHVH 275 (545)
Q Consensus 230 ~r~~~~~~~~~~~lyv~GG~--~~~~~~~~~~~~~d~~t~~~~W~~~~ 275 (545)
||.+|++++++++||||||. +.....++++++||+.++ +|+.++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~--~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETN--QWTELS 46 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCC--EEeecC
Confidence 58899999999999999998 445567899999999999 999876
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.77 E-value=2e-08 Score=67.66 Aligned_cols=45 Identities=33% Similarity=0.694 Sum_probs=38.8
Q ss_pred CccceeEEEEcCCEEEEEcCC---CCCcccCcEEEEecCCCCCceEeccCC
Q 042793 282 GRWGHTLSCVNGSHLVVFGGC---GRQGLLNDVFVLDLDAKPPTWREISGL 329 (545)
Q Consensus 282 ~r~~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~yd~~t~~~~W~~~~~~ 329 (545)
||++|+++++ +++|||+||. ......+++++||++++ +|+.++.+
T Consensus 1 ~r~~hs~~~~-~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~--~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVL-DGKIYVFGGYGTDNGGSSSNDVWVFDTETN--QWTELSPM 48 (49)
T ss_pred CccceEEEEE-CCEEEEECCcccCCCCcccceeEEEECCCC--EEeecCCC
Confidence 6899999887 5599999999 34447899999999999 99999875
No 44
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.74 E-value=5.5e-06 Score=74.69 Aligned_cols=173 Identities=20% Similarity=0.277 Sum_probs=103.8
Q ss_pred EEEEEcCCCCCCCccCceEEEeCCCCC-CceEEec------cCCCCCCccceeEEEE---cCCEEEEEcCCCCC------
Q 042793 242 RVVLFGGEGVNMQPMNDTFVLDLNSSN-PEWQHVH------VSSPPPGRWGHTLSCV---NGSHLVVFGGCGRQ------ 305 (545)
Q Consensus 242 ~lyv~GG~~~~~~~~~~~~~~d~~t~~-~~W~~~~------~~~~~~~r~~~~~~~~---~~~~iyv~GG~~~~------ 305 (545)
..+|.||..+++..++.+|++...+.. ++=..+. ....|.+|++|++.++ .+..+++|||..--
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 467779999999999999999887652 1211111 3578999999999887 33457889997521
Q ss_pred --------cccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCC-CCCccCcEEEEecCCC-CCc
Q 042793 306 --------GLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCAD-SGVLLSDTFLLDLSME-KPV 375 (545)
Q Consensus 306 --------~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~~~~-~~~ 375 (545)
.+.-.|+.+|++-.-.+=..++.+ ..+.++|.+.+- ++.+|++||..- .......++++.++.- ..-
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lpEl--~dG~SFHvslar-~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP 196 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLPEL--QDGQSFHVSLAR-NDCVYILGGHSLESDSRPPRLYRLKVDLLLGSP 196 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccchhh--cCCeEEEEEEec-CceEEEEccEEccCCCCCCcEEEEEEeecCCCc
Confidence 134568888988772222345544 567788888777 459999999642 2233344666553211 001
Q ss_pred eEEecCCCCCCCCCCcEE--EEECCcEEEEEcccCCCCCCccccCc
Q 042793 376 WREIPVTWTPPSRLGHTL--SVYGGRKILMFGGLAKSGPLRFRSSD 419 (545)
Q Consensus 376 W~~~~~~~~p~~r~~~~~--~~~~~~~lyi~GG~~~~~~~~~~~~~ 419 (545)
+-.-.. ++.+..-.++ +..+.+..+|+||+..+.+.+...+.
T Consensus 197 ~vsC~v--l~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~ 240 (337)
T PF03089_consen 197 AVSCTV--LQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNT 240 (337)
T ss_pred eeEEEE--CCCCceEeeeeEeecCCCceEEEecccccceeeeeeeE
Confidence 111111 2222222222 22344578999999877665443333
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.73 E-value=3e-08 Score=64.14 Aligned_cols=40 Identities=43% Similarity=0.610 Sum_probs=35.8
Q ss_pred CCCCCCceeeEEECCEEEEEcCCCC-CCCccCceEEEeCCC
Q 042793 227 VEPSRCNFSACAVGNRVVLFGGEGV-NMQPMNDTFVLDLNS 266 (545)
Q Consensus 227 ~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~~d~~t 266 (545)
+|++|.+|++++++++||||||... ....++|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4789999999999999999999874 667899999999875
No 46
>PF13854 Kelch_5: Kelch motif
Probab=98.64 E-value=4.5e-08 Score=63.29 Aligned_cols=40 Identities=35% Similarity=0.551 Sum_probs=35.7
Q ss_pred CCCCCCCceeEEeCCeeEEEEcCCCC-cccccccceeeeecc
Q 042793 504 PPRFAWGHSTCVVGGTRTIVLGGQTG-EEWMLSELHELSLVS 544 (545)
Q Consensus 504 ~p~~r~~~~~~~~~~~~l~i~GG~~~-~~~~~~~~~~l~l~~ 544 (545)
+|.+|.+|+++++ +++||||||.+. .+...+|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~-~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVV-GNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEE-CCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4889999999998 799999999994 667899999999986
No 47
>smart00612 Kelch Kelch domain.
Probab=98.62 E-value=6.4e-08 Score=64.81 Aligned_cols=46 Identities=28% Similarity=0.548 Sum_probs=40.6
Q ss_pred EEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEc
Q 042793 295 HLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLD 344 (545)
Q Consensus 295 ~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~ 344 (545)
+||++||.......+++++||+.++ +|+.+++| |.+|..|++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~--~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETN--KWTPLPSM--PTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCC--eEccCCCC--CCccccceEEEeC
Confidence 4899999876567899999999999 99999988 8899999888774
No 48
>PRK13559 hypothetical protein; Provisional
Probab=98.59 E-value=1e-07 Score=95.32 Aligned_cols=107 Identities=27% Similarity=0.402 Sum_probs=82.6
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
++.+|++|+++.++.... ..+...+.+...+..+..+..+...+++||+.+|+.+++.|+++++|.+.+++
T Consensus 81 ~~~~e~iG~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~G~~~~~v 151 (361)
T PRK13559 81 YAAEEVVGRNCRFLQGAA---------TDPIAVAKIRAAIAAEREIVVELLNYRKDGEPFWNALHLGPVYGEDGRLLYFF 151 (361)
T ss_pred CCHHHHcCCChhhhcCCC---------CCHHHHHHHHHHhccCCceEEEEEEEcCCCCEEEEEEEEEEEEcCCCCEEEee
Confidence 456778888776555433 56666777888888888888999999999999999999999999999999999
Q ss_pred EEeeeeeecccCCCCCCchhHHHhhhhhhhhccccc
Q 042793 82 GIQFFTEANVDLGPVPGYPVKEFLKSSERQRSFFSG 117 (545)
Q Consensus 82 ~~~~Dite~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 117 (545)
++.+|||++|+.+.+.++..+.+....|++++.+..
T Consensus 152 ~~~~DITerk~~e~~~~~~~~l~~~l~H~~~n~L~~ 187 (361)
T PRK13559 152 GSQWDVTDIRAVRALEAHERRLAREVDHRSKNVFAV 187 (361)
T ss_pred eeeeehhcchhhHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999976433333333344467777777753
No 49
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.49 E-value=8.1e-08 Score=64.03 Aligned_cols=46 Identities=41% Similarity=0.925 Sum_probs=39.5
Q ss_pred cccchhhHHHHHhhccCChhhhhhHHHhhHHHHHhcCChhhHHHHhh
Q 042793 135 IFQLSDEVISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWRMVCQ 181 (545)
Q Consensus 135 ~~~lp~~~~~~~~~~~l~~~~~~~~~~vcr~~~~l~~s~~~~~~~~~ 181 (545)
|..||+|++ .+|++++++.|+.+++.|||+|+.++.++.+|+..+.
T Consensus 1 i~~LP~Eil-~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEIL-LEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHH-HHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 457999999 6999999999999999999999999998899998763
No 50
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=98.45 E-value=5.4e-07 Score=72.77 Aligned_cols=80 Identities=19% Similarity=0.138 Sum_probs=65.4
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
.+.++++|+++..+.++. ..+.....+.+++..+.+...+..... +|..+|+.+++.|+.|++|++.+++
T Consensus 30 ~~~~~~~G~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Pi~~~~g~~~g~~ 99 (110)
T PF08448_consen 30 VSPEELIGRSLFDLLPPE---------DREEFQAALRRALAGGEPVFFEEILLR-DGEERWFEVSISPIFDEDGEVVGVL 99 (110)
T ss_dssp STHHHHTTSBHHHHSCCG---------CHHHHHHHHHHHHHHTSEEEEEEEECT-TSCEEEEEEEEEEEECTTTCEEEEE
T ss_pred CCHHHHhhccchhccccc---------hhhhhHHHHHHhhccCceEEEEEEEee-cCCcEEEEEEEEEeEcCCCCEEEEE
Confidence 356778888877555443 566777888888888887776655544 9999999999999999999999999
Q ss_pred EEeeeeeecc
Q 042793 82 GIQFFTEANV 91 (545)
Q Consensus 82 ~~~~Dite~~ 91 (545)
++.+|||++|
T Consensus 100 ~~~~DiT~~r 109 (110)
T PF08448_consen 100 VIIRDITERR 109 (110)
T ss_dssp EEEEEECCHH
T ss_pred EEEEECchhh
Confidence 9999999987
No 51
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.41 E-value=7.2e-06 Score=73.95 Aligned_cols=148 Identities=19% Similarity=0.220 Sum_probs=92.7
Q ss_pred CCCCCCCcEEEEE-C----C-cEEEEEcccCCCCCCccccCcEEEEeCCCCC-CceEEeecCCCCCCCCCCCCCCCCCcc
Q 042793 384 TPPSRLGHTLSVY-G----G-RKILMFGGLAKSGPLRFRSSDVFTMDLSEEE-PCWRCVTGSGMPGAGNPGGIAPPPRLD 456 (545)
Q Consensus 384 ~p~~r~~~~~~~~-~----~-~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~-~~W~~v~~~~~~~~~~~~g~~p~~r~~ 456 (545)
+|+-|+- +++.+ + + ...+|.||.+.++.. +..+|.+...... ++=..+... ..+..|..|.+|++
T Consensus 19 LPPLR~P-Av~~~~~~~~~~~~~YlIHGGrTPNNEl---S~~LY~ls~~s~~cNkK~tl~C~----EKeLvGdvP~aRYG 90 (337)
T PF03089_consen 19 LPPLRCP-AVCHLSDPSDGEPEQYLIHGGRTPNNEL---SSSLYILSVDSRGCNKKVTLCCQ----EKELVGDVPEARYG 90 (337)
T ss_pred CCCCCCc-cEeeecCCCCCCeeeEEecCCcCCCccc---ccceEEEEeecCCCCceeEEEEe----cceecCCCCccccc
Confidence 5555554 34444 1 1 245677998877764 7889988776422 222222222 12335889999999
Q ss_pred eEEEEec-CC--EEEEEcCcC-------------CCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCee
Q 042793 457 HVAVSLP-GG--RILIFGGSV-------------AGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTR 520 (545)
Q Consensus 457 ~~~~~~~-~~--~l~v~GG~~-------------~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~ 520 (545)
|+..++. .| ..++|||.+ .-......||.+|++-.+.+=..+ +.+.....+|.+++- ++.
T Consensus 91 Ht~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l---pEl~dG~SFHvslar-~D~ 166 (337)
T PF03089_consen 91 HTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL---PELQDGQSFHVSLAR-NDC 166 (337)
T ss_pred ceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc---hhhcCCeEEEEEEec-Cce
Confidence 9887764 23 377899954 111235668888986333222222 566667778888776 789
Q ss_pred EEEEcCCCC-cccccccceeeeec
Q 042793 521 TIVLGGQTG-EEWMLSELHELSLV 543 (545)
Q Consensus 521 l~i~GG~~~-~~~~~~~~~~l~l~ 543 (545)
+|++||+.- .+.+...+|++.++
T Consensus 167 VYilGGHsl~sd~Rpp~l~rlkVd 190 (337)
T PF03089_consen 167 VYILGGHSLESDSRPPRLYRLKVD 190 (337)
T ss_pred EEEEccEEccCCCCCCcEEEEEEe
Confidence 999999874 34566778888764
No 52
>smart00612 Kelch Kelch domain.
Probab=98.37 E-value=6e-07 Score=59.98 Aligned_cols=46 Identities=26% Similarity=0.464 Sum_probs=38.9
Q ss_pred EEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEc
Q 042793 242 RVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVN 292 (545)
Q Consensus 242 ~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~ 292 (545)
+||++||... ...++++++||+.++ +|+.++ +|+.+|..|++++++
T Consensus 1 ~iyv~GG~~~-~~~~~~v~~yd~~~~--~W~~~~--~~~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDG-GQRLKSVEVYDPETN--KWTPLP--SMPTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCC-CceeeeEEEECCCCC--eEccCC--CCCCccccceEEEeC
Confidence 4899999754 456889999999999 999766 899999999988764
No 53
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=98.29 E-value=4.3e-06 Score=64.97 Aligned_cols=61 Identities=30% Similarity=0.402 Sum_probs=53.4
Q ss_pred CCCCCCCHHHHHHHHH-HHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEe
Q 042793 24 RRHPLVDSSVVSEIRR-CLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQ 84 (545)
Q Consensus 24 ~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~ 84 (545)
+.||++.....+.+.+ ....+..+..+++.+++||+.+|+.++..++.|++|.+.+++|+.
T Consensus 30 ~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~~G~~~wi~~~~~~~~d~~g~~~~~~Gv~ 91 (91)
T PF08447_consen 30 RIHPDDRERVRQAIQQAALQNGEPFEIEYRIRRKDGEYRWIEVRGRPIFDENGKPIRIIGVI 91 (91)
T ss_dssp HB-TTTHHHHHHHHHHHHHHTT-EEEEEEEEEGTTSTEEEEEEEEEEEETTTS-EEEEEEEE
T ss_pred hcCHHHHHHHHHHHHHHhhccCcceEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEC
Confidence 4788888888899998 788888999999999999999999999999999999999999974
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.29 E-value=0.00047 Score=69.74 Aligned_cols=163 Identities=12% Similarity=0.080 Sum_probs=95.1
Q ss_pred eeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCC---C---CCCccceeEEEEcCCEEEEEcCCCCCcc
Q 042793 234 FSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSS---P---PPGRWGHTLSCVNGSHLVVFGGCGRQGL 307 (545)
Q Consensus 234 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~---~---~~~r~~~~~~~~~~~~iyv~GG~~~~~~ 307 (545)
.+.++.+++||+.... ..+++||..+.+..|+.-.... . ..++...+. ++.++++|+.+.
T Consensus 63 ~sPvv~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~v~v~~~------ 128 (394)
T PRK11138 63 LHPAVAYNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGV-TVAGGKVYIGSE------ 128 (394)
T ss_pred eccEEECCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCccccccccccccccccc-EEECCEEEEEcC------
Confidence 3556789999998753 2799999988878898532110 0 011222222 344668887432
Q ss_pred cCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCC
Q 042793 308 LNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPS 387 (545)
Q Consensus 308 ~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~ 387 (545)
...++++|.+|....|+.-... + . ..+.++. ++.+|+..+. +.++.+|..+.+..|+.-...+....
T Consensus 129 ~g~l~ald~~tG~~~W~~~~~~--~-~--~ssP~v~-~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 129 KGQVYALNAEDGEVAWQTKVAG--E-A--LSRPVVS-DGLVLVHTSN-------GMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred CCEEEEEECCCCCCcccccCCC--c-e--ecCCEEE-CCEEEEECCC-------CEEEEEEccCCCEeeeecCCCCcccc
Confidence 2368999999998899854321 1 1 1112333 5578875431 35899998888888987542111111
Q ss_pred CCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEE
Q 042793 388 RLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRC 434 (545)
Q Consensus 388 r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~ 434 (545)
+...+-++.++ .+|+..+ ...++.+|+.+....|+.
T Consensus 196 ~~~~sP~v~~~-~v~~~~~----------~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 196 RGESAPATAFG-GAIVGGD----------NGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred cCCCCCEEECC-EEEEEcC----------CCEEEEEEccCChhhhee
Confidence 11122233444 6666433 256888898866677975
No 55
>PRK13558 bacterio-opsin activator; Provisional
Probab=98.25 E-value=1.6e-06 Score=94.26 Aligned_cols=83 Identities=30% Similarity=0.445 Sum_probs=69.6
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
++.+|++|+++.++..+. ......+.+...+..+..+..+.+.+++||+.+|+.++..|+.+++|.+.+++
T Consensus 186 ~~~eel~g~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~G~~~~~v 256 (665)
T PRK13558 186 YSPDEVLGRNCRFLQGED---------TNEERVAELREAIDEERPTSVELRNYRKDGSTFWNQVDIAPIRDEDGTVTHYV 256 (665)
T ss_pred cCHHHHcCCCHHHhcCCC---------ccHHHHHHHHHHHhcCCCeEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEE
Confidence 456677777766555433 55666777888888888899999999999999999999999999999999999
Q ss_pred EEeeeeeecccC
Q 042793 82 GIQFFTEANVDL 93 (545)
Q Consensus 82 ~~~~Dite~~~~ 93 (545)
++.+|||++|+.
T Consensus 257 gi~~DITerk~~ 268 (665)
T PRK13558 257 GFQTDVTERKEA 268 (665)
T ss_pred EEEEeCcHHHHH
Confidence 999999999954
No 56
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=98.24 E-value=1.2e-06 Score=91.56 Aligned_cols=121 Identities=18% Similarity=0.152 Sum_probs=88.5
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
+++++++|++...+.... ......+.+.+.+..+.++..++..++++|+.+|+...+.|+.+++|.+.+++
T Consensus 39 ~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~ 109 (494)
T TIGR02938 39 YTKEEIIGKNESVLSNHT---------TPPEVYQALWGSLAEQKPWAGKLLNRRKDGELYLAELTVAPVLNEAGETTHFL 109 (494)
T ss_pred CCHHHHhCCCchhhcCCC---------CCHHHHHHHHHHHHhCCcccceeeccCCCccchhhheeeEEEECCCCCEEEEE
Confidence 456677776644443322 55667777888888888888888889999999999999999999999999999
Q ss_pred EEeeeeeecccCCCCCCchhHHHhhhhhhhhccccc-----CCCcccCCCC-ccccccCcccc
Q 042793 82 GIQFFTEANVDLGPVPGYPVKEFLKSSERQRSFFSG-----NRTFPIGDRN-VCREVCGIFQL 138 (545)
Q Consensus 82 ~~~~Dite~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~~~g~~~-~~~~~~~~~~l 138 (545)
++.+|||++++. .+++.+.+++++.++++ +..+.++... +|++.+.+.+.
T Consensus 110 ~~~~DIt~~k~~-------e~~l~~~~~~~~~~~~~~~~~i~~~d~~~~i~~~N~~~~~~~g~ 165 (494)
T TIGR02938 110 GMHRDITELHRL-------EQVVANQKLLIESVVDAAPVAFVLLDPTGRVILDNQEYKKLATD 165 (494)
T ss_pred EehhhhhHHHHH-------HHHHHHHHHHHHHHHhcccceEEEEcCCCCEEEechhHHHhhch
Confidence 999999999853 23344455666666653 3444454443 67777777654
No 57
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.19 E-value=0.0011 Score=67.06 Aligned_cols=202 Identities=16% Similarity=0.265 Sum_probs=118.1
Q ss_pred CceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcE
Q 042793 232 CNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDV 311 (545)
Q Consensus 232 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 311 (545)
...+.++.+++||+.+.. ..++.+|..+.+..|+.-. +.+- .+...+.++.+|+..+ ...+
T Consensus 112 ~~~~~~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~----~~~~--~ssP~v~~~~v~v~~~------~g~l 172 (394)
T PRK11138 112 LSGGVTVAGGKVYIGSEK-------GQVYALNAEDGEVAWQTKV----AGEA--LSRPVVSDGLVLVHTS------NGML 172 (394)
T ss_pred cccccEEECCEEEEEcCC-------CEEEEEECCCCCCcccccC----CCce--ecCCEEECCEEEEECC------CCEE
Confidence 344566778899875432 2799999998888998522 1111 1222334567877543 1368
Q ss_pred EEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCC----
Q 042793 312 FVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPS---- 387 (545)
Q Consensus 312 ~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~---- 387 (545)
+.+|+.+....|+.-...+....+...+.+.. ++.+|+..+. ..++.+|..+....|+.-.. .|..
T Consensus 173 ~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~-------g~v~a~d~~~G~~~W~~~~~--~~~~~~~~ 242 (394)
T PRK11138 173 QALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDN-------GRVSAVLMEQGQLIWQQRIS--QPTGATEI 242 (394)
T ss_pred EEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCC-------CEEEEEEccCChhhheeccc--cCCCccch
Confidence 99999999888986433211111222222333 4466664331 34788888777778975321 1111
Q ss_pred -C---CCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEec
Q 042793 388 -R---LGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLP 463 (545)
Q Consensus 388 -r---~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~ 463 (545)
+ ...+-++.++ .+|+.+. ...++.+|+.+....|+.-.. .+. ..++.
T Consensus 243 ~~~~~~~~sP~v~~~-~vy~~~~----------~g~l~ald~~tG~~~W~~~~~--------------~~~----~~~~~ 293 (394)
T PRK11138 243 DRLVDVDTTPVVVGG-VVYALAY----------NGNLVALDLRSGQIVWKREYG--------------SVN----DFAVD 293 (394)
T ss_pred hcccccCCCcEEECC-EEEEEEc----------CCeEEEEECCCCCEEEeecCC--------------Ccc----CcEEE
Confidence 0 1122334555 8887643 257899999866667975321 111 12334
Q ss_pred CCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEe
Q 042793 464 GGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 464 ~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~ 498 (545)
+++||+... ...++.+|+++.+..|+.-
T Consensus 294 ~~~vy~~~~-------~g~l~ald~~tG~~~W~~~ 321 (394)
T PRK11138 294 GGRIYLVDQ-------NDRVYALDTRGGVELWSQS 321 (394)
T ss_pred CCEEEEEcC-------CCeEEEEECCCCcEEEccc
Confidence 888988753 3579999998666678753
No 58
>PRK09776 putative diguanylate cyclase; Provisional
Probab=98.16 E-value=1.8e-06 Score=99.52 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=94.1
Q ss_pred CCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeeeecccCCCCCCchhHHH
Q 042793 25 RHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEANVDLGPVPGYPVKEF 104 (545)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite~~~~~~~~~~~~~~~ 104 (545)
.||++.....+.+.+.+..+.++..|++.+++|| .+|+.....|+.|++|.+.+++++.+|||++|+. .+++
T Consensus 460 ~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG-~~w~~~~~~~~~d~~G~~~~~ig~~~DITerk~~-------e~~L 531 (1092)
T PRK09776 460 LHPEDRQRVEKEIRDALQGRSPFKLEFRIVVKDG-VRHIRALANRVLNKDGEVERLLGINMDMTEVRQL-------NEAL 531 (1092)
T ss_pred cCHhHHHHHHHHHHHHHhcCCCeeEEEEEEcCCc-eEEEEEeeEEEECCCCCEEEEEeeeeehhHHHHH-------HHHH
Confidence 5676666677778888888899999999999999 9999999999999999999999999999999954 3445
Q ss_pred hhhhhhhhccccc-----CCCcccCCCC-ccccccCcccc-hhhHHHHHhhcc
Q 042793 105 LKSSERQRSFFSG-----NRTFPIGDRN-VCREVCGIFQL-SDEVISLKILSW 150 (545)
Q Consensus 105 ~~~~~r~~~~~~~-----~~~~~~g~~~-~~~~~~~~~~l-p~~~~~~~~~~~ 150 (545)
.+.++|++.++++ +..+.++... +|++.+.+.|. ++|+++..+...
T Consensus 532 ~~~~~~l~~~l~~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~e~iG~~~~~~ 584 (1092)
T PRK09776 532 FQEKERLHITLDSIGEAVVCTDMAMKVTFMNPVAEKMTGWTQEEALGVPLLTV 584 (1092)
T ss_pred HHHHHHHHHHHhccccEEEEECCCCeEEEEcHHHHHHhCCCHHHHcCCCHHHH
Confidence 5577788877775 4555566553 79999999998 777765444333
No 59
>PRK13560 hypothetical protein; Provisional
Probab=98.09 E-value=4.9e-06 Score=92.77 Aligned_cols=127 Identities=10% Similarity=-0.031 Sum_probs=89.5
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEE--EEEeecCCCCEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLR--LSPIYGDDETITH 79 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~--~~pi~d~~g~~~~ 79 (545)
++.+|++|+++..+.+.. ............+..++....+...+++||+.+|+++. ..|+.+.+|.+.+
T Consensus 239 ~~~~e~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~~~~~g~~~g 309 (807)
T PRK13560 239 FRREEIIGMSIHDFAPAQ---------PADDYQEADAAKFDADGSQIIEAEFQNKDGRTRPVDVIFNHAEFDDKENHCAG 309 (807)
T ss_pred CCHHHHcCCcchhcCCcc---------hhHHHHHHHHHHhccCCceEEEEEEEcCCCCEEEEEEEecceEEEcCCCCEEE
Confidence 567788888766555432 22233334445566677778888899999999977655 4567899999999
Q ss_pred EEEEeeeeeecccCCCCCCchhHHHhhhhhhhhccccc-----CCCcccCCCC-c-cccccCcccc-hhhHHH
Q 042793 80 VIGIQFFTEANVDLGPVPGYPVKEFLKSSERQRSFFSG-----NRTFPIGDRN-V-CREVCGIFQL-SDEVIS 144 (545)
Q Consensus 80 ~i~~~~Dite~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~~~g~~~-~-~~~~~~~~~l-p~~~~~ 144 (545)
++++.+|||++|+. .+++.++++|++.++++ +..+.++... + ++..+.+.|+ ++++++
T Consensus 310 ~~~~~~DITerk~~-------e~~L~~se~~l~~l~~~~~~~i~~~d~~g~i~~~nn~~~~~~~G~~~~e~~g 375 (807)
T PRK13560 310 LVGAITDISGRRAA-------ERELLEKEDMLRAIIEAAPIAAIGLDADGNICFVNNNAAERMLGWSAAEVMG 375 (807)
T ss_pred EEEEEEechHHHHH-------HHHHHHHHHHHHHHHHhCcccEEEEcCCCCEEEecCHHHHHHhCCCHHHHcC
Confidence 99999999999954 34455577888888874 4455566553 3 5566778898 666664
No 60
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=98.08 E-value=2.1e-06 Score=88.28 Aligned_cols=143 Identities=11% Similarity=0.002 Sum_probs=88.0
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCC-eEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGI-EFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHV 80 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~ 80 (545)
++.+|++|++...+. ||+......+.+...+..+. .+..++....++|..+|+.++..++.++. ++
T Consensus 31 ~~~~el~G~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~----~~ 97 (442)
T TIGR02040 31 EQLSEWEGRRWEEIV---------TAESVEKFELRLSEALRTGRGAVRVELNHIDPSSFELPMRFILVRLGADR----GV 97 (442)
T ss_pred cccccCCCCcHhHhh---------CcchHHHHHHHHHHHhccCCCcceEeeccCCCCCCccCeEEEEEEeCCCC----eE
Confidence 556777777654333 23344444555555555543 45555554556666777777766665422 45
Q ss_pred EEEeeeeeecccCCCCC-------CchhHHHhhhhhhhhccccc-----CCCcc-cCCC-CccccccCcccc-hhhHHHH
Q 042793 81 IGIQFFTEANVDLGPVP-------GYPVKEFLKSSERQRSFFSG-----NRTFP-IGDR-NVCREVCGIFQL-SDEVISL 145 (545)
Q Consensus 81 i~~~~Dite~~~~~~~~-------~~~~~~~~~~~~r~~~~~~~-----~~~~~-~g~~-~~~~~~~~~~~l-p~~~~~~ 145 (545)
+++.+|||++++.|++. ++..+++.+.++|++.++++ +..+. +|.. .+|++.+.+.|+ ++++++.
T Consensus 98 ~~i~rDi~~~~~~~~~l~~~~~~~e~~~~~l~~~e~r~~~l~e~~~~~i~~~d~~~g~i~~~N~a~~~l~G~~~~el~g~ 177 (442)
T TIGR02040 98 LALGRDLRAVAELQQQLVAAQQAMERDYWTLREMETRYRVVLEVSSDAVLLVDMSTGRIVEANSAAAALLGGVGQSLVGR 177 (442)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEEECCCCEEEEEcHHHHHHhCcCHHHHcCC
Confidence 78999999877542222 22222555577888888874 33343 4544 389999999999 7888776
Q ss_pred HhhccCChhhhh
Q 042793 146 KILSWLSPRDIA 157 (545)
Q Consensus 146 ~~~~~l~~~~~~ 157 (545)
.+..++++.+..
T Consensus 178 ~~~~~~~~~~~~ 189 (442)
T TIGR02040 178 AFPQEFEGRRRE 189 (442)
T ss_pred CHHHhCCHHHHH
Confidence 666667766544
No 61
>PRK13557 histidine kinase; Provisional
Probab=98.05 E-value=1.3e-05 Score=84.77 Aligned_cols=83 Identities=33% Similarity=0.474 Sum_probs=72.4
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
++.+|++|+++..+..++ ..+...+.+...+..+..+..++..+++||+.+|+.+.+.|+.+.+|.+.+++
T Consensus 68 ~~~~e~~g~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~~~g~~~~~~ 138 (540)
T PRK13557 68 YAAEEIIGNNCRFLQGPE---------TDRATVAEVRDAIAERREIATEILNYRKDGSSFWNALFVSPVYNDAGDLVYFF 138 (540)
T ss_pred CCHHHhcCCChHhhcCCC---------CCHHHHHHHHHHHHcCCCceEEEEEEeCCCCEEEEEEEEEEeECCCCCEEEEE
Confidence 677888898877665443 67778888889999998888899989999999999999999999999999999
Q ss_pred EEeeeeeecccC
Q 042793 82 GIQFFTEANVDL 93 (545)
Q Consensus 82 ~~~~Dite~~~~ 93 (545)
++.+|||++++.
T Consensus 139 ~~~~dit~~~~~ 150 (540)
T PRK13557 139 GSQLDVSRRRDA 150 (540)
T ss_pred EEecChHHHHHH
Confidence 999999998854
No 62
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.01 E-value=0.002 Score=59.81 Aligned_cols=201 Identities=14% Similarity=0.182 Sum_probs=108.1
Q ss_pred CceEEEeCCCCCCceEEeccCCCCC---CccceeEEE--E-cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCC
Q 042793 257 NDTFVLDLNSSNPEWQHVHVSSPPP---GRWGHTLSC--V-NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLA 330 (545)
Q Consensus 257 ~~~~~~d~~t~~~~W~~~~~~~~~~---~r~~~~~~~--~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~ 330 (545)
..++++||.|+ +|+.++..+.+. .+....... . +.=||+.+...........+++|+..++ +|+.+....
T Consensus 14 ~~~~V~NP~T~--~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~--~Wr~~~~~~ 89 (230)
T TIGR01640 14 KRLVVWNPSTG--QSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSN--SWRTIECSP 89 (230)
T ss_pred CcEEEECCCCC--CEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCC--CccccccCC
Confidence 37999999999 999886322211 111011111 1 1115555544321123357899999999 999987432
Q ss_pred CCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEE-ecCCCCCCCC----CCcEEEEECCcEEEEEc
Q 042793 331 PPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWRE-IPVTWTPPSR----LGHTLSVYGGRKILMFG 405 (545)
Q Consensus 331 ~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~-~~~~~~p~~r----~~~~~~~~~~~~lyi~G 405 (545)
+........+.++| .+|-+..... +.....+..||+..+ +|.. ++ +|... ....++.+++ +|.++.
T Consensus 90 -~~~~~~~~~v~~~G-~lyw~~~~~~-~~~~~~IvsFDl~~E--~f~~~i~---~P~~~~~~~~~~~L~~~~G-~L~~v~ 160 (230)
T TIGR01640 90 -PHHPLKSRGVCING-VLYYLAYTLK-TNPDYFIVSFDVSSE--RFKEFIP---LPCGNSDSVDYLSLINYKG-KLAVLK 160 (230)
T ss_pred -CCccccCCeEEECC-EEEEEEEECC-CCCcEEEEEEEcccc--eEeeeee---cCccccccccceEEEEECC-EEEEEE
Confidence 21111222555655 7777653211 111125899997755 8884 54 33322 1334566766 888776
Q ss_pred ccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCc---ceEEEEecCCEEEEEcCcCCCCCCCCc
Q 042793 406 GLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRL---DHVAVSLPGGRILIFGGSVAGLHSATQ 482 (545)
Q Consensus 406 G~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~---~~~~~~~~~~~l~v~GG~~~~~~~~~~ 482 (545)
...... .-+||+++-.. ..+|++.-...+ .+.+.. ........+++|++.... ....-
T Consensus 161 ~~~~~~-----~~~IWvl~d~~-~~~W~k~~~i~~---------~~~~~~~~~~~~~~~~~~g~I~~~~~~----~~~~~ 221 (230)
T TIGR01640 161 QKKDTN-----NFDLWVLNDAG-KQEWSKLFTVPI---------PPLPDLVDDNFLSGFTDKGEIVLCCED----ENPFY 221 (230)
T ss_pred ecCCCC-----cEEEEEECCCC-CCceeEEEEEcC---------cchhhhhhheeEeEEeeCCEEEEEeCC----CCceE
Confidence 543211 36899886321 456998755511 111111 123334457888876542 11123
Q ss_pred eEEEcCC
Q 042793 483 LYLLDPT 489 (545)
Q Consensus 483 v~~~d~~ 489 (545)
+..||++
T Consensus 222 ~~~y~~~ 228 (230)
T TIGR01640 222 IFYYNVG 228 (230)
T ss_pred EEEEecc
Confidence 8889986
No 63
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.00 E-value=4e-06 Score=56.20 Aligned_cols=45 Identities=31% Similarity=0.692 Sum_probs=38.5
Q ss_pred cccchhhHHHHHhhccCChhhhhhHHHhhHHHHHhcCChhhHHHHh
Q 042793 135 IFQLSDEVISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWRMVC 180 (545)
Q Consensus 135 ~~~lp~~~~~~~~~~~l~~~~~~~~~~vcr~~~~l~~s~~~~~~~~ 180 (545)
+..||+|++ .+|+.++++.++..++.|||+|++++.+..+|...+
T Consensus 3 ~~~LP~~il-~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEIL-QEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHH-HHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHH-HHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 568999999 589999999999999999999999999999987765
No 64
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.99 E-value=7.7e-06 Score=52.68 Aligned_cols=40 Identities=38% Similarity=0.682 Sum_probs=36.9
Q ss_pred chhhHHHHHhhccCChhhhhhHHHhhHHHHHhcCChhhHHH
Q 042793 138 LSDEVISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWRM 178 (545)
Q Consensus 138 lp~~~~~~~~~~~l~~~~~~~~~~vcr~~~~l~~s~~~~~~ 178 (545)
||+|++ ..|++++++.++.+++.|||+|+.++..+.+|+.
T Consensus 1 lP~~ll-~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEIL-EEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 689999 5899999999999999999999999999988863
No 65
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.99 E-value=0.0045 Score=62.24 Aligned_cols=159 Identities=18% Similarity=0.241 Sum_probs=91.8
Q ss_pred eeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEE
Q 042793 234 FSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFV 313 (545)
Q Consensus 234 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 313 (545)
.+.++.++++|+.+.. ..+++||..+.+..|+.-. +. +...+ .++.++.+|+.+. + ..+++
T Consensus 59 ~~p~v~~~~v~v~~~~-------g~v~a~d~~tG~~~W~~~~----~~-~~~~~-p~v~~~~v~v~~~-~-----g~l~a 119 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD-------GTVVALDAETGKRLWRVDL----DE-RLSGG-VGADGGLVFVGTE-K-----GEVIA 119 (377)
T ss_pred cceEEECCEEEEECCC-------CeEEEEEccCCcEeeeecC----CC-Ccccc-eEEcCCEEEEEcC-C-----CEEEE
Confidence 4556778888887643 2699999988877897522 11 11112 2345667776432 2 46899
Q ss_pred EecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEE
Q 042793 314 LDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTL 393 (545)
Q Consensus 314 yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~ 393 (545)
+|..+....|+.-... .. . +...+.++.+|+..+. ..++.+|..+....|+.-........+...+.
T Consensus 120 ld~~tG~~~W~~~~~~----~~-~-~~p~v~~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp 186 (377)
T TIGR03300 120 LDAEDGKELWRAKLSS----EV-L-SPPLVANGLVVVRTND-------GRLTALDAATGERLWTYSRVTPALTLRGSASP 186 (377)
T ss_pred EECCCCcEeeeeccCc----ee-e-cCCEEECCEEEEECCC-------CeEEEEEcCCCceeeEEccCCCceeecCCCCC
Confidence 9999887789854321 11 1 1122335577775431 34899998777778976432111011122233
Q ss_pred EEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEe
Q 042793 394 SVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCV 435 (545)
Q Consensus 394 ~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v 435 (545)
+..++ .+| +|.. ...++.+|+.+....|+.-
T Consensus 187 ~~~~~-~v~-~~~~---------~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 187 VIADG-GVL-VGFA---------GGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred EEECC-EEE-EECC---------CCEEEEEEccCCCEeeeec
Confidence 44444 554 4332 2578899988656678643
No 66
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.88 E-value=0.0017 Score=59.53 Aligned_cols=151 Identities=11% Similarity=0.159 Sum_probs=89.7
Q ss_pred eEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCC--CCCceEeccC-CCCCCCC
Q 042793 259 TFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDA--KPPTWREISG-LAPPLPR 335 (545)
Q Consensus 259 ~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t--~~~~W~~~~~-~~~~~~r 335 (545)
-..||+.++ +++.+. ...--++.+-+.+.+.++++.||.... .+.+-.|++.+ .+..|.+... | ..+|
T Consensus 48 s~~yD~~tn--~~rpl~---v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~~m--~~~R 118 (243)
T PF07250_consen 48 SVEYDPNTN--TFRPLT---VQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPNDM--QSGR 118 (243)
T ss_pred EEEEecCCC--cEEecc---CCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECcccc--cCCC
Confidence 457999998 888664 222223333334445589999997653 34577788765 1237987764 6 7889
Q ss_pred ccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecC----CCCCceEEecC--CCCCCCCCCcEEEEECCcEEEEEcccCC
Q 042793 336 SWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLS----MEKPVWREIPV--TWTPPSRLGHTLSVYGGRKILMFGGLAK 409 (545)
Q Consensus 336 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~----~~~~~W~~~~~--~~~p~~r~~~~~~~~~~~~lyi~GG~~~ 409 (545)
...++..+.+++++|+||.... .+.|-.. .....|..+.. ...+...+-+.. +..+++|++++..
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~~------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~-llPdG~lFi~an~-- 189 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNNP------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVH-LLPDGNLFIFANR-- 189 (243)
T ss_pred ccccceECCCCCEEEEeCcCCC------cccccCCccCCCCceeeecchhhhccCccccCceEE-EcCCCCEEEEEcC--
Confidence 9999999988899999997521 2222211 11112222221 112222333333 4445599999763
Q ss_pred CCCCccccCcEEEEeCCCCCCce-EEeecC
Q 042793 410 SGPLRFRSSDVFTMDLSEEEPCW-RCVTGS 438 (545)
Q Consensus 410 ~~~~~~~~~~i~~~d~~~~~~~W-~~v~~~ 438 (545)
+-..||.. ++++ +.++.+
T Consensus 190 ---------~s~i~d~~--~n~v~~~lP~l 208 (243)
T PF07250_consen 190 ---------GSIIYDYK--TNTVVRTLPDL 208 (243)
T ss_pred ---------CcEEEeCC--CCeEEeeCCCC
Confidence 34567888 6666 566554
No 67
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.87 E-value=0.00088 Score=61.40 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=91.1
Q ss_pred cEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCC--CCCceEEecCCCCCCC
Q 042793 310 DVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSM--EKPVWREIPVTWTPPS 387 (545)
Q Consensus 310 ~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~--~~~~W~~~~~~~~p~~ 387 (545)
..-.||+.|+ +++.+... .-.-.++++ ...++++.+.||..++ ...+-.|+... .+..|.+... .|..+
T Consensus 47 ~s~~yD~~tn--~~rpl~v~-td~FCSgg~--~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~-~m~~~ 117 (243)
T PF07250_consen 47 HSVEYDPNTN--TFRPLTVQ-TDTFCSGGA--FLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPN-DMQSG 117 (243)
T ss_pred EEEEEecCCC--cEEeccCC-CCCcccCcC--CCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcc-cccCC
Confidence 4567999999 99877642 122233332 3345589999997553 23466677432 2357987763 38889
Q ss_pred CCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCC----CCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEec
Q 042793 388 RLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSE----EEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLP 463 (545)
Q Consensus 388 r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~----~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~ 463 (545)
|...++..+.+++++|+||.... .+.|-+.. ....|..+... ....+.. ......+..
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~~---------t~E~~P~~~~~~~~~~~~~l~~~--------~~~~~~n-lYP~~~llP 179 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNNP---------TYEFWPPKGPGPGPVTLPFLSQT--------SDTLPNN-LYPFVHLLP 179 (243)
T ss_pred CccccceECCCCCEEEEeCcCCC---------cccccCCccCCCCceeeecchhh--------hccCccc-cCceEEEcC
Confidence 99999999988899999998622 22332321 01122222211 0011222 234566667
Q ss_pred CCEEEEEcCcCCCCCCCCceEEEcCCCCCCce-EEec
Q 042793 464 GGRILIFGGSVAGLHSATQLYLLDPTEEKPTW-RILN 499 (545)
Q Consensus 464 ~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W-~~~~ 499 (545)
+|+|++++. .+-.+||.. ++++ +.++
T Consensus 180 dG~lFi~an--------~~s~i~d~~--~n~v~~~lP 206 (243)
T PF07250_consen 180 DGNLFIFAN--------RGSIIYDYK--TNTVVRTLP 206 (243)
T ss_pred CCCEEEEEc--------CCcEEEeCC--CCeEEeeCC
Confidence 999999977 346778986 4444 5553
No 68
>PRK13560 hypothetical protein; Provisional
Probab=97.86 E-value=2e-05 Score=87.92 Aligned_cols=123 Identities=11% Similarity=-0.068 Sum_probs=87.9
Q ss_pred CCCCCCCCCHHHHH-------HHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeeeecccCC
Q 042793 22 AKRRHPLVDSSVVS-------EIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEANVDLG 94 (545)
Q Consensus 22 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite~~~~~ 94 (545)
.-+.||++.....+ .+..++..+.....+.+.+++||+ |+.+...|.++++|.+ .++|+.+|||++|++
T Consensus 120 ~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~dg~--~~~~~~~~~~~~~g~~-~~~g~~~DIT~rk~a- 195 (807)
T PRK13560 120 AMLIGGDDGDFFFANPFRSAETIAMALQSDDWQEEEGHFRCGDGR--FIDCCLRFERHAHADD-QVDGFAEDITERKRA- 195 (807)
T ss_pred hhhcCCCcchhhhhChhhHHHHHHHHhccCcccceEEEEEeCCcc--EEEEEeeeeecCCCce-EEEEEEEccchHHHH-
Confidence 34578887665442 233333344455677888899996 6677788999988876 689999999999954
Q ss_pred CCCCchhHHHhhhhhhhhccccc-----CCCcccCCCC-ccccccCcccc-hhhHHHHHhhccCChh
Q 042793 95 PVPGYPVKEFLKSSERQRSFFSG-----NRTFPIGDRN-VCREVCGIFQL-SDEVISLKILSWLSPR 154 (545)
Q Consensus 95 ~~~~~~~~~~~~~~~r~~~~~~~-----~~~~~~g~~~-~~~~~~~~~~l-p~~~~~~~~~~~l~~~ 154 (545)
.+++.+.+++++.++++ +..+.+|... +|++.+.+.|+ ++|+++..+..+.|..
T Consensus 196 ------e~~l~~~~~~l~~l~e~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~~~~~~ 256 (807)
T PRK13560 196 ------EERIDEALHFLQQLLDNIADPAFWKDEDAKVFGCNDAACLACGFRREEIIGMSIHDFAPAQ 256 (807)
T ss_pred ------HHHHHHHHHHHHHHHhhCCCeEEEEcCCCCEEEEhHHHHHHhCCCHHHHcCCcchhcCCcc
Confidence 33455677888888875 4556666663 89999999999 7888776565665553
No 69
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.84 E-value=0.0073 Score=56.20 Aligned_cols=199 Identities=23% Similarity=0.325 Sum_probs=116.8
Q ss_pred eEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEe
Q 042793 236 ACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLD 315 (545)
Q Consensus 236 ~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 315 (545)
.+..++.+|+..+. ..++++|..+....|+.-. +.+ ..... .+.++.+|+..+. +.++.+|
T Consensus 32 ~~~~~~~v~~~~~~-------~~l~~~d~~tG~~~W~~~~----~~~-~~~~~-~~~~~~v~v~~~~------~~l~~~d 92 (238)
T PF13360_consen 32 AVPDGGRVYVASGD-------GNLYALDAKTGKVLWRFDL----PGP-ISGAP-VVDGGRVYVGTSD------GSLYALD 92 (238)
T ss_dssp EEEETTEEEEEETT-------SEEEEEETTTSEEEEEEEC----SSC-GGSGE-EEETTEEEEEETT------SEEEEEE
T ss_pred EEEeCCEEEEEcCC-------CEEEEEECCCCCEEEEeec----ccc-cccee-eecccccccccce------eeeEecc
Confidence 34478899988432 3899999988877787532 221 11122 3446688887621 3799999
Q ss_pred cCCCCCceE-eccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCC-----
Q 042793 316 LDAKPPTWR-EISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRL----- 389 (545)
Q Consensus 316 ~~t~~~~W~-~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~----- 389 (545)
..+....|+ ..... .+.+........+.++.+|+... ...++.+|+++....|+.-.. .+....
T Consensus 93 ~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~~ 162 (238)
T PF13360_consen 93 AKTGKVLWSIYLTSS-PPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVG--EPRGSSPISSF 162 (238)
T ss_dssp TTTSCEEEEEEE-SS-CTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESS--TT-SS--EEEE
T ss_pred cCCcceeeeeccccc-cccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecC--CCCCCcceeee
Confidence 999988999 44432 12222222333444667777543 245899998887778887543 222111
Q ss_pred --CcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEE
Q 042793 390 --GHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRI 467 (545)
Q Consensus 390 --~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l 467 (545)
..+..++.++.+|+..+. ..+..+|..+....|+.. .. .........++.|
T Consensus 163 ~~~~~~~~~~~~~v~~~~~~----------g~~~~~d~~tg~~~w~~~-~~----------------~~~~~~~~~~~~l 215 (238)
T PF13360_consen 163 SDINGSPVISDGRVYVSSGD----------GRVVAVDLATGEKLWSKP-IS----------------GIYSLPSVDGGTL 215 (238)
T ss_dssp TTEEEEEECCTTEEEEECCT----------SSEEEEETTTTEEEEEEC-SS-----------------ECECEECCCTEE
T ss_pred cccccceEEECCEEEEEcCC----------CeEEEEECCCCCEEEEec-CC----------------CccCCceeeCCEE
Confidence 112334444488887653 336677888433358433 11 1111134446777
Q ss_pred EEEcCcCCCCCCCCceEEEcCCCCCCceEE
Q 042793 468 LIFGGSVAGLHSATQLYLLDPTEEKPTWRI 497 (545)
Q Consensus 468 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~ 497 (545)
|+.. . .+.++++|+++.+..|+.
T Consensus 216 ~~~~-~------~~~l~~~d~~tG~~~W~~ 238 (238)
T PF13360_consen 216 YVTS-S------DGRLYALDLKTGKVVWQQ 238 (238)
T ss_dssp EEEE-T------TTEEEEEETTTTEEEEEE
T ss_pred EEEe-C------CCEEEEEECCCCCEEeEC
Confidence 7765 2 368999999877777863
No 70
>PRK09776 putative diguanylate cyclase; Provisional
Probab=97.83 E-value=1.1e-05 Score=93.03 Aligned_cols=140 Identities=11% Similarity=-0.002 Sum_probs=93.4
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcC-CeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEG-IEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHV 80 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~ 80 (545)
++.+|++|++... +.||+......+.+...+... ..+..+.+..++||+.+|+.++..|+++++|.+.++
T Consensus 318 ~~~~el~g~~~~~---------~~~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~~~g~~~~~ 388 (1092)
T PRK09776 318 YSQEELRGLTFQQ---------LTWPEDLNKDLQQVEKLLSGEINSYSMEKRYYRRDGEVVWALLAVSLVRDTDGTPLYF 388 (1092)
T ss_pred CCHHHHccCCcee---------ccCcchhHhHHHHHHHHHcCCccceeeeeEEEcCCCCEEEEEEEEEEEECCCCCEeee
Confidence 3455666655332 234555555555555544433 346778888999999999999999999999999999
Q ss_pred EEEeeeeeecccCCCCCCchhHHHhhhhhhhhccccc-----CCCcccCCC-CccccccCcccchhhHH-H-HHhhccCC
Q 042793 81 IGIQFFTEANVDLGPVPGYPVKEFLKSSERQRSFFSG-----NRTFPIGDR-NVCREVCGIFQLSDEVI-S-LKILSWLS 152 (545)
Q Consensus 81 i~~~~Dite~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~~~g~~-~~~~~~~~~~~lp~~~~-~-~~~~~~l~ 152 (545)
+++.+|||++|+. .+++.+.++|++.++++ +..+.++.. .+|+....+.|++.+-. . ......++
T Consensus 389 i~~~~DITerk~~-------e~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~~ 461 (1092)
T PRK09776 389 IAQIEDINELKRT-------EQVNERLMERITLANEAGGIGIWEWDLKPNIISWDKRMFELYEIPPHIKPTWQVWYACLH 461 (1092)
T ss_pred hhhHHhhHHHHHH-------HHHHHHHHHHHHHHHHhcCceEEEEecCCCeEeeCHHHHHHhCCCcccCCCHHHHHHhcC
Confidence 9999999999954 34455566777777653 455555555 37888888888843321 0 12334455
Q ss_pred hhhhh
Q 042793 153 PRDIA 157 (545)
Q Consensus 153 ~~~~~ 157 (545)
+.+..
T Consensus 462 p~d~~ 466 (1092)
T PRK09776 462 PEDRQ 466 (1092)
T ss_pred HhHHH
Confidence 55443
No 71
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.74 E-value=5.5e-05 Score=74.80 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=73.8
Q ss_pred CcccccccCC--CCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEE
Q 042793 2 RDLGAETNDG--IRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITH 79 (545)
Q Consensus 2 ~~~~~~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~ 79 (545)
|.-+|+.-++ |.|..++. ++.+.++.+++.+++-+.-+.|+..|+|+-++.|..+.+.||+++...++-
T Consensus 55 Y~RAevMQKs~tc~FMyGEl---------tdk~ti~k~~~t~eN~~~~qfEillyKKN~TPvW~~vqiAPIrNe~d~VVL 125 (971)
T KOG0501|consen 55 YHRAEVMQKSCTCSFMYGEL---------TDKGTIEKVRQTLENYETNQFEILLYKKNRTPVWLLVQIAPIRNEKDKVVL 125 (971)
T ss_pred ccHHHHhcccceeeeeeccc---------cchhhHHHHHHHHHhhhhcceeeEeeecCCCceEEEEEeecccCCCceEEE
Confidence 3446666665 56888877 999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeeeecccC
Q 042793 80 VIGIQFFTEANVDL 93 (545)
Q Consensus 80 ~i~~~~Dite~~~~ 93 (545)
|++.++|||..|+-
T Consensus 126 fLctFkDIT~~KQP 139 (971)
T KOG0501|consen 126 FLCTFKDITALKQP 139 (971)
T ss_pred EEeecccchhhcCC
Confidence 99999999988843
No 72
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.74 E-value=0.0012 Score=61.47 Aligned_cols=44 Identities=23% Similarity=0.519 Sum_probs=38.9
Q ss_pred ccch----hhHHHHHhhccCChhhhhhHHHhhHHHHHhcCChhhHHHHh
Q 042793 136 FQLS----DEVISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWRMVC 180 (545)
Q Consensus 136 ~~lp----~~~~~~~~~~~l~~~~~~~~~~vcr~~~~l~~s~~~~~~~~ 180 (545)
..|| +++.+ .|++.|...++-++.+|||+|+.++..+-+|+.+.
T Consensus 76 ~~lP~~gl~hi~e-~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLi 123 (499)
T KOG0281|consen 76 TALPEQGLDHIAE-NILSYLDALSLCACELVCKEWKRVLSDGMLWKKLI 123 (499)
T ss_pred HhcccccHHHHHH-HHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 3457 88884 89999999999999999999999999999998763
No 73
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.74 E-value=0.017 Score=53.67 Aligned_cols=222 Identities=20% Similarity=0.303 Sum_probs=123.4
Q ss_pred ceEEEeCCCCCCceEEeccCCCCCCcccee-EEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCc
Q 042793 258 DTFVLDLNSSNPEWQHVHVSSPPPGRWGHT-LSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRS 336 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~ 336 (545)
.+.++|+.+....|+.- +..+..... .+...++++|+..+ ...++++|+.+....|+.-.+. + -.
T Consensus 4 ~l~~~d~~tG~~~W~~~----~~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~~--~--~~ 69 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD----LGPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDLPG--P--IS 69 (238)
T ss_dssp EEEEEETTTTEEEEEEE----CSSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEECSS--C--GG
T ss_pred EEEEEECCCCCEEEEEE----CCCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeeccc--c--cc
Confidence 57889988776678752 111122222 13435668888742 3579999999987788854432 1 11
Q ss_pred cceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceE-EecCCCCCCC--CCCcEEEEECCcEEEEEcccCCCCCC
Q 042793 337 WHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWR-EIPVTWTPPS--RLGHTLSVYGGRKILMFGGLAKSGPL 413 (545)
Q Consensus 337 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~-~~~~~~~p~~--r~~~~~~~~~~~~lyi~GG~~~~~~~ 413 (545)
. .. ...++.+|+...- +.++.+|..+....|+ .... .+.. .........++ .+|+...
T Consensus 70 ~-~~-~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~------- 130 (238)
T PF13360_consen 70 G-AP-VVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYLTS--SPPAGVRSSSSPAVDGD-RLYVGTS------- 130 (238)
T ss_dssp S-GE-EEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE-S--SCTCSTB--SEEEEETT-EEEEEET-------
T ss_pred c-ee-eecccccccccce-------eeeEecccCCcceeeeecccc--ccccccccccCceEecC-EEEEEec-------
Confidence 1 12 3446688887531 2689999888888999 4433 1222 22233333444 6766543
Q ss_pred ccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCC--cceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCC
Q 042793 414 RFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPR--LDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEE 491 (545)
Q Consensus 414 ~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r--~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~ 491 (545)
...++.+|+++....|..-...+ .+..+... ......++.++.+|+..+.. .+..+|.++.
T Consensus 131 ---~g~l~~~d~~tG~~~w~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-------~~~~~d~~tg 193 (238)
T PF13360_consen 131 ---SGKLVALDPKTGKLLWKYPVGEP-------RGSSPISSFSDINGSPVISDGRVYVSSGDG-------RVVAVDLATG 193 (238)
T ss_dssp ---CSEEEEEETTTTEEEEEEESSTT--------SS--EEEETTEEEEEECCTTEEEEECCTS-------SEEEEETTTT
T ss_pred ---cCcEEEEecCCCcEEEEeecCCC-------CCCcceeeecccccceEEECCEEEEEcCCC-------eEEEEECCCC
Confidence 37899999987666788654220 00000000 11234444467888876632 2677798765
Q ss_pred CCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeecc
Q 042793 492 KPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 492 ~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
...|+.. .. . ..+.....++.||+.. .+ +.++.+|+++
T Consensus 194 ~~~w~~~-~~-~------~~~~~~~~~~~l~~~~-~~------~~l~~~d~~t 231 (238)
T PF13360_consen 194 EKLWSKP-IS-G------IYSLPSVDGGTLYVTS-SD------GRLYALDLKT 231 (238)
T ss_dssp EEEEEEC-SS--------ECECEECCCTEEEEEE-TT------TEEEEEETTT
T ss_pred CEEEEec-CC-C------ccCCceeeCCEEEEEe-CC------CEEEEEECCC
Confidence 5458443 21 1 1122344467777655 32 5588888765
No 74
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=97.68 E-value=5.7e-05 Score=83.73 Aligned_cols=83 Identities=11% Similarity=0.033 Sum_probs=66.1
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
++.+|++|+++..+.+++ ......+.....+..+.++..+....++||+.+|+.++..|+.+++|.+.+++
T Consensus 190 ~~~~eliG~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~~~~~~~~pi~~~~g~~~g~v 260 (779)
T PRK11091 190 KSEKQLIGLTPKDVYSPE---------AAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFELRKVPFYDRVGKRHGLM 260 (779)
T ss_pred cCHHHHcCCChHHhCCHH---------HHHHHHHHHHHHHhcCCCeEEEEEEEcCCCCEEEEEEEeeeEEcCCCCEEEEE
Confidence 345677777655444322 44455566666777888888899999999999999999999999999999999
Q ss_pred EEeeeeeecccC
Q 042793 82 GIQFFTEANVDL 93 (545)
Q Consensus 82 ~~~~Dite~~~~ 93 (545)
++.+|||++|+.
T Consensus 261 ~~~~DITe~k~~ 272 (779)
T PRK11091 261 GFGRDITERKRY 272 (779)
T ss_pred EEEeehhHHHHH
Confidence 999999999954
No 75
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.67 E-value=0.026 Score=56.77 Aligned_cols=200 Identities=17% Similarity=0.205 Sum_probs=109.4
Q ss_pred eEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEe
Q 042793 236 ACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLD 315 (545)
Q Consensus 236 ~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 315 (545)
.++.++.+|+..+. ..++.+|+.+....|+.-...+....+...+.+.. ++.+| +|..+ ..++.+|
T Consensus 141 p~v~~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~-~~~~~-----g~v~ald 206 (377)
T TIGR03300 141 PLVANGLVVVRTND-------GRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVL-VGFAG-----GKLVALD 206 (377)
T ss_pred CEEECCEEEEECCC-------CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEE-EECCC-----CEEEEEE
Confidence 34567788775432 26999999887778985321111011222233333 44454 44322 3588999
Q ss_pred cCCCCCceEeccCCCCCCC-----Cc--cceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCC
Q 042793 316 LDAKPPTWREISGLAPPLP-----RS--WHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSR 388 (545)
Q Consensus 316 ~~t~~~~W~~~~~~~~~~~-----r~--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 388 (545)
+.+....|+.-... +.. +. ..+...+.++.+|+.+.. ..++.||+.+....|+.-.. .
T Consensus 207 ~~tG~~~W~~~~~~--~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~-------g~l~a~d~~tG~~~W~~~~~-----~- 271 (377)
T TIGR03300 207 LQTGQPLWEQRVAL--PKGRTELERLVDVDGDPVVDGGQVYAVSYQ-------GRVAALDLRSGRVLWKRDAS-----S- 271 (377)
T ss_pred ccCCCEeeeecccc--CCCCCchhhhhccCCccEEECCEEEEEEcC-------CEEEEEECCCCcEEEeeccC-----C-
Confidence 98887788743211 111 10 011223345678875431 35899998777777865321 1
Q ss_pred CCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEE
Q 042793 389 LGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRIL 468 (545)
Q Consensus 389 ~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~ 468 (545)
..+.+..++ .+|+... ...++.+|..+....|+.-... .+...+.++ .+++||
T Consensus 272 -~~~p~~~~~-~vyv~~~----------~G~l~~~d~~tG~~~W~~~~~~--------------~~~~ssp~i-~g~~l~ 324 (377)
T TIGR03300 272 -YQGPAVDDN-RLYVTDA----------DGVVVALDRRSGSELWKNDELK--------------YRQLTAPAV-VGGYLV 324 (377)
T ss_pred -ccCceEeCC-EEEEECC----------CCeEEEEECCCCcEEEcccccc--------------CCccccCEE-ECCEEE
Confidence 112233444 8887642 3678999998656678753211 111112223 377777
Q ss_pred EEcCcCCCCCCCCceEEEcCCCCCCceEEe
Q 042793 469 IFGGSVAGLHSATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 469 v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~ 498 (545)
+.. . ...++++|+.+.+..|+.-
T Consensus 325 ~~~-~------~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 325 VGD-F------EGYLHWLSREDGSFVARLK 347 (377)
T ss_pred EEe-C------CCEEEEEECCCCCEEEEEE
Confidence 642 2 3569999997666677543
No 76
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=97.66 E-value=0.00013 Score=58.99 Aligned_cols=77 Identities=18% Similarity=0.146 Sum_probs=56.9
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEE-EEEeeecCCcceeEEEEEEEeecCCCCEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQG-ELLNFRKDGSPLMNRLRLSPIYGDDETITHV 80 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~ 80 (545)
++.+|++|+++..+..++ ...+..+.+...+..+..... +.....++|+.+|+.+..+|+.+.+|++.++
T Consensus 36 ~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 106 (113)
T PF00989_consen 36 YSREELIGKSLFDLIHPE---------DRRELRERLRQALSQGESGESFEVRFRLRDGRPRWVEVRASPVRDEDGQIIGI 106 (113)
T ss_dssp S-HHHHTTSBGGGGCSGG---------GHHHHHHHHHHHHHHCCHECEEEEEEEETTSCEEEEEEEEEEEEETTEEEEEE
T ss_pred cCHHHHcCCcHHHhcCch---------hhHHHHHHHHHHHHcCCCceeEEEEEEecCCcEEEEEEEEEEEEeCCCCEEEE
Confidence 466788888866444322 334577788888877765544 3444447999999999999999999999999
Q ss_pred EEEeeee
Q 042793 81 IGIQFFT 87 (545)
Q Consensus 81 i~~~~Di 87 (545)
+++.+||
T Consensus 107 ~~~~~DI 113 (113)
T PF00989_consen 107 LVIFRDI 113 (113)
T ss_dssp EEEEEE-
T ss_pred EEEEEeC
Confidence 9999997
No 77
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.31 E-value=0.056 Score=50.06 Aligned_cols=204 Identities=12% Similarity=0.134 Sum_probs=107.2
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCC-Cccc-eEEEE----cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCC
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLP-RSWH-SSCTL----DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVT 382 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~-r~~~-~~~~~----~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~ 382 (545)
..+.++||.|. .|..++..+.+.. ...+ .+..+ +.-|+..+.... .......+.+|++. +..|+.+...
T Consensus 14 ~~~~V~NP~T~--~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~-~~~~~~~~~Vys~~--~~~Wr~~~~~ 88 (230)
T TIGR01640 14 KRLVVWNPSTG--QSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS-GNRNQSEHQVYTLG--SNSWRTIECS 88 (230)
T ss_pred CcEEEECCCCC--CEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec-CCCCCccEEEEEeC--CCCccccccC
Confidence 46899999999 9999985421101 1111 11111 111444443321 11123468899966 4599988641
Q ss_pred CCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEE-eecCCCCCCCCCCCCCCCCCc---ceE
Q 042793 383 WTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRC-VTGSGMPGAGNPGGIAPPPRL---DHV 458 (545)
Q Consensus 383 ~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~-v~~~~~~~~~~~~g~~p~~r~---~~~ 458 (545)
.+........+.+++ .+|-+........ ...|..||+. +.+|.+ ++ . |.... ...
T Consensus 89 -~~~~~~~~~~v~~~G-~lyw~~~~~~~~~----~~~IvsFDl~--~E~f~~~i~-~------------P~~~~~~~~~~ 147 (230)
T TIGR01640 89 -PPHHPLKSRGVCING-VLYYLAYTLKTNP----DYFIVSFDVS--SERFKEFIP-L------------PCGNSDSVDYL 147 (230)
T ss_pred -CCCccccCCeEEECC-EEEEEEEECCCCC----cEEEEEEEcc--cceEeeeee-c------------Cccccccccce
Confidence 111111222455666 8887764322111 1269999999 778985 43 2 32221 123
Q ss_pred EEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCC---CceeEEeCCeeEEEEcCCCCcccccc
Q 042793 459 AVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAW---GHSTCVVGGTRTIVLGGQTGEEWMLS 535 (545)
Q Consensus 459 ~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~---~~~~~~~~~~~l~i~GG~~~~~~~~~ 535 (545)
.+...+|+|.++...... ..-+||+++-. ++..|+++-..+..+.+.. .....+..+++|++.-... . ..
T Consensus 148 ~L~~~~G~L~~v~~~~~~--~~~~IWvl~d~-~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~-~---~~ 220 (230)
T TIGR01640 148 SLINYKGKLAVLKQKKDT--NNFDLWVLNDA-GKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE-N---PF 220 (230)
T ss_pred EEEEECCEEEEEEecCCC--CcEEEEEECCC-CCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC-C---ce
Confidence 344447888877553211 12578888733 2456998644332222222 2244555678888866531 1 11
Q ss_pred cceeeeeccC
Q 042793 536 ELHELSLVSK 545 (545)
Q Consensus 536 ~~~~l~l~~~ 545 (545)
-+..||++++
T Consensus 221 ~~~~y~~~~~ 230 (230)
T TIGR01640 221 YIFYYNVGEN 230 (230)
T ss_pred EEEEEeccCC
Confidence 2778887653
No 78
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=97.21 E-value=0.0004 Score=77.47 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=80.0
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcC----CeEEEEEEeeecCCcceeEEEEEEEeecCCCCE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEG----IEFQGELLNFRKDGSPLMNRLRLSPIYGDDETI 77 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~ 77 (545)
++.+|++|++...+..++ ..+.....+......+ ..+..+++.+++||+.+|+.+++.|+. .+|.
T Consensus 47 ~s~eeliG~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~~~~-~~g~- 115 (799)
T PRK11359 47 YKREEVIGNNIDMLIPRD---------LRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKVS-AEGK- 115 (799)
T ss_pred CCHHHHcCCCHHHhcCcc---------ccccchHHHhhhhccCCccccccceeeEEecCCcCEEEEEEEeeeec-cCCc-
Confidence 567888888765444322 3332333333333332 234558888999999999999998884 4455
Q ss_pred EEEEEEeeeeeecccCCCCCCchhHHHhhhhhhhhccccc-----CCCcccCCCC-ccccccCcccc-hhhHHHHHhhcc
Q 042793 78 THVIGIQFFTEANVDLGPVPGYPVKEFLKSSERQRSFFSG-----NRTFPIGDRN-VCREVCGIFQL-SDEVISLKILSW 150 (545)
Q Consensus 78 ~~~i~~~~Dite~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~~~g~~~-~~~~~~~~~~l-p~~~~~~~~~~~ 150 (545)
.+++++.+|||++++. .+.++++..++++ +..+.++... +|++.+.+.|+ ++++++.....+
T Consensus 116 ~~~~~~~~DiT~~~~~-----------~~~~~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~~ 184 (799)
T PRK11359 116 VYYLALVRDASVEMAQ-----------KEQTRQLIIAVDHLDRPVIVLDPERRIVQCNRAFTEMFGYCISEASGMQPDTL 184 (799)
T ss_pred eEEEEEEeeccchhhh-----------HHHHHHHHHHHhcCCCcEEEEcCCCcEEEEChhhHhhhCCCHHHHCCCChHHh
Confidence 4688999999987743 1122333333332 4455565553 79999999998 777765444444
Q ss_pred CC
Q 042793 151 LS 152 (545)
Q Consensus 151 l~ 152 (545)
++
T Consensus 185 ~~ 186 (799)
T PRK11359 185 LN 186 (799)
T ss_pred cC
Confidence 43
No 79
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=97.00 E-value=0.001 Score=74.19 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeeeecccC
Q 042793 29 VDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEANVDL 93 (545)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite~~~~ 93 (545)
......+.+...+..+..+..+.+..++||..+|+.++..|+.+++|.+.+++++.+|||++++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~v~d~~g~~~~~~~~~~DITerk~~ 254 (799)
T PRK11359 190 FPADNRIRLQQLLWKTARDQDEFLLLTRTGEKIWIKASISPVYDVLAHLQNLVMTFSDITEERQI 254 (799)
T ss_pred CcHHHHHHHHHhhccCCCCcceeEEeCCCCCEEEEEeeeeeeecCCCceeEEEEEeehhhhHHHH
Confidence 55556666777777777788888889999999999999999999999999999999999998854
No 80
>PRK10060 RNase II stability modulator; Provisional
Probab=96.92 E-value=0.0016 Score=70.53 Aligned_cols=83 Identities=10% Similarity=-0.057 Sum_probs=59.1
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCC-EEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDET-ITHV 80 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~-~~~~ 80 (545)
++.+|++|+++..+.. +|+......+.+...+..+..|..|.+.++++|+.+|..... ++.+.+|. ..++
T Consensus 146 y~~~eliG~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~~~~~~~-~~~~~~g~~~~~~ 216 (663)
T PRK10060 146 LKEHDVIGQSVFKLFM--------SRREAAASRRNIRGFFRSGNAYEVERWIKTRKGQRLFLFRNK-FVHSGSGKNEIFL 216 (663)
T ss_pred cCHHHHcCCCHHHHhC--------ChhhHHHHHHHHHHHHhcCCceEEEEEEEeCCCCEEEEEeee-EEEcCCCCceEEE
Confidence 5667788887533221 222445556677777888889999999999999999987554 44544544 4578
Q ss_pred EEEeeeeeecccC
Q 042793 81 IGIQFFTEANVDL 93 (545)
Q Consensus 81 i~~~~Dite~~~~ 93 (545)
+++.+|||++++.
T Consensus 217 i~~~~DITe~k~~ 229 (663)
T PRK10060 217 ICSGTDITEERRA 229 (663)
T ss_pred EEEEEechHHHHH
Confidence 8999999998843
No 81
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.91 E-value=0.00076 Score=62.30 Aligned_cols=56 Identities=32% Similarity=0.846 Sum_probs=47.8
Q ss_pred ccCcccchhhHHHHHhhccCC-----hhhhhhHHHhhHHHHHhcCChhhHHHHhhhcccCCc
Q 042793 132 VCGIFQLSDEVISLKILSWLS-----PRDIASVGSVCRRFYELTKNEDLWRMVCQNAWGSET 188 (545)
Q Consensus 132 ~~~~~~lp~~~~~~~~~~~l~-----~~~~~~~~~vcr~~~~l~~s~~~~~~~~~~~~~~~~ 188 (545)
...|.-||+|++ +.|+.++= ..++.++++|||.|+-.++.+++|+..|.-.|+..+
T Consensus 104 ~~~~~~LPdEvL-m~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~ 164 (366)
T KOG2997|consen 104 LISISVLPDEVL-MRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSC 164 (366)
T ss_pred hhhhhhCCHHHH-HHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhh
Confidence 334678999999 78987644 489999999999999999999999999999887654
No 82
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.88 E-value=0.52 Score=49.06 Aligned_cols=254 Identities=15% Similarity=0.165 Sum_probs=121.7
Q ss_pred eeEEECCEEEEEcCCCCCC---CccCceEEEeCCCCCCceEEeccCC--CCCCccc-------------eeEEEE--cCC
Q 042793 235 SACAVGNRVVLFGGEGVNM---QPMNDTFVLDLNSSNPEWQHVHVSS--PPPGRWG-------------HTLSCV--NGS 294 (545)
Q Consensus 235 ~~~~~~~~lyv~GG~~~~~---~~~~~~~~~d~~t~~~~W~~~~~~~--~~~~r~~-------------~~~~~~--~~~ 294 (545)
+.++.++.+|+ |..+... .....++.+|..|.+..|+.-...+ +..+... .+..++ .++
T Consensus 151 sP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g 229 (488)
T cd00216 151 APTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN 229 (488)
T ss_pred CCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC
Confidence 34555666654 4321111 1234799999999888897532111 1111000 011223 245
Q ss_pred EEEEEcCCC------------CCcccCcEEEEecCCCCCceEeccCCCCCCC--CccceEEE-----EcCC--EEEEEcC
Q 042793 295 HLVVFGGCG------------RQGLLNDVFVLDLDAKPPTWREISGLAPPLP--RSWHSSCT-----LDGT--KLIVSGG 353 (545)
Q Consensus 295 ~iyv~GG~~------------~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~--r~~~~~~~-----~~~~--~iyv~GG 353 (545)
.+|+-.|.. .....+.++.+|.+|....|+.-.... ... +....... .++. .+.++|.
T Consensus 230 ~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~-~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~ 308 (488)
T cd00216 230 LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH-DLWDYDGPNQPSLADIKPKDGKPVPAIVHAP 308 (488)
T ss_pred EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC-CCcccccCCCCeEEeccccCCCeeEEEEEEC
Confidence 666654422 111345799999999988998532210 000 11111111 2232 1333343
Q ss_pred CCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCC--------CCccccCcEEEEeC
Q 042793 354 CADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSG--------PLRFRSSDVFTMDL 425 (545)
Q Consensus 354 ~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~--------~~~~~~~~i~~~d~ 425 (545)
.+ ..++.+|..+....|+.-.. ..+ +....+ .+|+-....... ........++.+|.
T Consensus 309 ~~------G~l~ald~~tG~~~W~~~~~-~~~-------~~~~~~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~ 373 (488)
T cd00216 309 KN------GFFYVLDRTTGKLISARPEV-EQP-------MAYDPG-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP 373 (488)
T ss_pred CC------ceEEEEECCCCcEeeEeEee-ccc-------cccCCc-eEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence 21 34899999888888975431 001 111113 666633211100 00011357999999
Q ss_pred CCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCC
Q 042793 426 SEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPP 505 (545)
Q Consensus 426 ~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p 505 (545)
.+.+..|+.-.... ........+... ...++.++.| ++|.. ...++.||.++.+..|+.- ++
T Consensus 374 ~tG~~~W~~~~~~~-----~~~~~~g~~~~~-~~~~~~g~~v-~~g~~------dG~l~ald~~tG~~lW~~~-----~~ 435 (488)
T cd00216 374 KTGKVVWEKREGTI-----RDSWNIGFPHWG-GSLATAGNLV-FAGAA------DGYFRAFDATTGKELWKFR-----TP 435 (488)
T ss_pred CCCcEeeEeeCCcc-----ccccccCCcccC-cceEecCCeE-EEECC------CCeEEEEECCCCceeeEEE-----CC
Confidence 87778898653210 000000011111 2333435544 44443 2569999998777789853 22
Q ss_pred CCCCCceeEEeCCeeEEE
Q 042793 506 RFAWGHSTCVVGGTRTIV 523 (545)
Q Consensus 506 ~~r~~~~~~~~~~~~l~i 523 (545)
.+.....++...++++||
T Consensus 436 ~~~~a~P~~~~~~g~~yv 453 (488)
T cd00216 436 SGIQATPMTYEVNGKQYV 453 (488)
T ss_pred CCceEcCEEEEeCCEEEE
Confidence 222233333333677777
No 83
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.87 E-value=0.5 Score=49.20 Aligned_cols=188 Identities=11% Similarity=0.082 Sum_probs=97.3
Q ss_pred ceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCC-CC-CCc-cceeEEEEcCCEEEEEcCCCCCcccC
Q 042793 233 NFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSS-PP-PGR-WGHTLSCVNGSHLVVFGGCGRQGLLN 309 (545)
Q Consensus 233 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~-~~-~~r-~~~~~~~~~~~~iyv~GG~~~~~~~~ 309 (545)
..+.++.++.+|+.... ..++.+|..+....|+.-.... .. .+. .....+..++++||+... ..
T Consensus 54 ~~sPvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~g 120 (488)
T cd00216 54 EGTPLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------DG 120 (488)
T ss_pred ccCCEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------CC
Confidence 34556779999986543 2799999998877898532111 00 010 111222233257776432 24
Q ss_pred cEEEEecCCCCCceEeccCCCCCCC-CccceEEEEcCCEEEEEcCCCCCC---CccCcEEEEecCCCCCceEEecCCCCC
Q 042793 310 DVFVLDLDAKPPTWREISGLAPPLP-RSWHSSCTLDGTKLIVSGGCADSG---VLLSDTFLLDLSMEKPVWREIPVTWTP 385 (545)
Q Consensus 310 ~~~~yd~~t~~~~W~~~~~~~~~~~-r~~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~~d~~~~~~~W~~~~~~~~p 385 (545)
.++.+|.+|....|+.-........ ....+.++. ++.+|+ |...... .....++.+|..+.+..|+.-.....+
T Consensus 121 ~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~ 198 (488)
T cd00216 121 RLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDP 198 (488)
T ss_pred eEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCCc
Confidence 6899999998888986443210000 011122333 445554 4221110 123568999998888899764321110
Q ss_pred --CCC----------CC---cEEEEE--CCcEEEEEcccCCCC--------CCccccCcEEEEeCCCCCCceEEe
Q 042793 386 --PSR----------LG---HTLSVY--GGRKILMFGGLAKSG--------PLRFRSSDVFTMDLSEEEPCWRCV 435 (545)
Q Consensus 386 --~~r----------~~---~~~~~~--~~~~lyi~GG~~~~~--------~~~~~~~~i~~~d~~~~~~~W~~v 435 (545)
.+. .+ .+...+ .++.+|+-.+..... ......+.++.+|.++....|+.-
T Consensus 199 ~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 199 NAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred CCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 000 00 011233 233666543321000 001124579999999878899854
No 84
>TIGR00229 sensory_box PAS domain S-box. The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator.
Probab=96.71 E-value=0.0039 Score=49.11 Aligned_cols=64 Identities=27% Similarity=0.208 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHcC-CeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeeeecccC
Q 042793 29 VDSSVVSEIRRCLEEG-IEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEANVDL 93 (545)
Q Consensus 29 ~~~~~~~~~~~~~~~~-~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite~~~~ 93 (545)
........+...+... .....+.....++|..+|+.+...|+. ++|...+++++..|||++++.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dit~~~~~ 120 (124)
T TIGR00229 56 DREEVRERIERLLEGEREPVSEERRVRRKDGSEIWVEVSVSPIR-TNGGELGVVGIVRDITERKQA 120 (124)
T ss_pred hhHHHHHHHHHHHcCCCCCcceEeeeEcCCCCEEEEEEEEeehh-hCCCeeEEEEEeeehhHHHHH
Confidence 3333444454555423 223444555689999999999999998 788889999999999988744
No 85
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=96.68 E-value=0.015 Score=43.32 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeee
Q 042793 29 VDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFT 87 (545)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Di 87 (545)
......+.+...+..+.....++....++|...|+.+...++.+..|...+++++.+||
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di 103 (103)
T cd00130 45 DREELRERLENLLSGGEPVTLEVRLRRKDGSVIWVLVSLTPIRDEGGEVIGLLGVVRDI 103 (103)
T ss_pred cchHHHHHHHHHHhcCcCeEEEEEEEccCCCEEEEEEEEEEEecCCCCEEEEEEEEecC
Confidence 44455555666666566677788888889999999999999999888998999988886
No 86
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.61 E-value=0.062 Score=50.77 Aligned_cols=113 Identities=22% Similarity=0.356 Sum_probs=71.3
Q ss_pred ccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCc-ccCcEEEEecCCCCCceEeccCC---C
Q 042793 255 PMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQG-LLNDVFVLDLDAKPPTWREISGL---A 330 (545)
Q Consensus 255 ~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~t~~~~W~~~~~~---~ 330 (545)
....+..||..+. +|..+... ..... .++..+.+++||+.|-..-.+ ....+-.||.++. +|+.+... .
T Consensus 14 ~C~~lC~yd~~~~--qW~~~g~~--i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~--~w~~~~~~~s~~ 86 (281)
T PF12768_consen 14 PCPGLCLYDTDNS--QWSSPGNG--ISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ--TWSSLGGGSSNS 86 (281)
T ss_pred CCCEEEEEECCCC--EeecCCCC--ceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC--eeeecCCccccc
Confidence 4568899999988 99976422 22221 222334577888888655443 4556888999999 99988763 2
Q ss_pred CCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecC
Q 042793 331 PPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPV 381 (545)
Q Consensus 331 ~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 381 (545)
.|.|.........+.+.+++.|... .+ ..-+..|| ..+|+.+..
T Consensus 87 ipgpv~a~~~~~~d~~~~~~aG~~~-~g--~~~l~~~d----Gs~W~~i~~ 130 (281)
T PF12768_consen 87 IPGPVTALTFISNDGSNFWVAGRSA-NG--STFLMKYD----GSSWSSIGS 130 (281)
T ss_pred CCCcEEEEEeeccCCceEEEeceec-CC--CceEEEEc----CCceEeccc
Confidence 3444433232333566788887752 22 23477787 459999865
No 87
>smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain). PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold.
Probab=96.57 E-value=0.012 Score=35.63 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=35.0
Q ss_pred EEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeeee
Q 042793 50 ELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEA 89 (545)
Q Consensus 50 e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite 89 (545)
++...+++|..+|+.....++.+..|.+.+++++..|||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ 42 (43)
T smart00086 3 EYRLRRKDGSYIWVLVSASPIRDEDGEVEGILGVVRDITE 42 (43)
T ss_pred EEEEEecCCCEEEEEEEeEEEECCCCCEEEEEEEEEeccC
Confidence 4556788999999999999999988999999999999985
No 88
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.57 E-value=0.065 Score=50.62 Aligned_cols=125 Identities=17% Similarity=0.220 Sum_probs=77.3
Q ss_pred EEEEcCCCCCc--ccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCC
Q 042793 296 LVVFGGCGRQG--LLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEK 373 (545)
Q Consensus 296 iyv~GG~~~~~--~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 373 (545)
|||-|-+...+ ....+-.||+.+. +|..+... ..+. -.+....+++++|+.|-..-.+.....+..||.+ +
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~~--qW~~~g~~--i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~--~ 73 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDNS--QWSSPGNG--ISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFK--N 73 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCCC--EeecCCCC--ceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecC--C
Confidence 35545455444 3677889999999 99988754 2221 1223334577899888765444344568889965 5
Q ss_pred CceEEecCC---CCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeec
Q 042793 374 PVWREIPVT---WTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTG 437 (545)
Q Consensus 374 ~~W~~~~~~---~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~ 437 (545)
.+|+.+... ..|.+.........+...+++.|.. ..+ ..-+..|| ..+|..+..
T Consensus 74 ~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g-----~~~l~~~d----Gs~W~~i~~ 130 (281)
T PF12768_consen 74 QTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANG-----STFLMKYD----GSSWSSIGS 130 (281)
T ss_pred CeeeecCCcccccCCCcEEEEEeeccCCceEEEecee-cCC-----CceEEEEc----CCceEeccc
Confidence 599888752 2454433222222344478877776 322 35677786 568999876
No 89
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=96.57 E-value=0.0082 Score=61.80 Aligned_cols=48 Identities=4% Similarity=-0.124 Sum_probs=38.3
Q ss_pred CCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeeeecccC
Q 042793 44 GIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEANVDL 93 (545)
Q Consensus 44 ~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite~~~~ 93 (545)
+.....+....++||+.+|+.++++|+.++++ ..++++.+|||+|++.
T Consensus 320 g~~~~~~~~~~~~~G~~~~ve~s~~~i~~~~~--~~~~~v~rDITeR~~~ 367 (442)
T TIGR02040 320 GQVRLYATTLTGEFGAQTEVEISAAWVDQGER--PLIVLVIRDISRRLTM 367 (442)
T ss_pred CceEEEEEEEEcCCCCEEEEEEEEEEeccCCc--eEEEEEEecchhhccC
Confidence 33334556678999999999999999987555 4688999999999854
No 90
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=96.53 E-value=0.012 Score=46.95 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=44.3
Q ss_pred cccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeee
Q 042793 7 ETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFF 86 (545)
Q Consensus 7 ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~D 86 (545)
.+|+++..++.+ ...+.++.+.+.+..++.-..+... .++|. |+.+.+.|+++++|+..+.+.++.|
T Consensus 38 ~iGr~l~~~~~~----------~~~~~l~~~i~~~~~~~~~~~~~~~-~~~~~--~~~~~~~P~~~~~g~~~G~v~~~~D 104 (106)
T PF13596_consen 38 DIGRPLFDIHPP----------LSYPNLKKIIEQVRSGKEEEFEIVI-PNGGR--WYLVRYRPYRDEDGEYAGAVITFQD 104 (106)
T ss_dssp GTTSBCCCSS-H----------HHHHHHHHHHHHHHTTSBSEEEEEE-EETTE--EEEEEEEEEE-TTS-EEEEEEEEEE
T ss_pred HCCCCHHHcCCc----------cchHHHHHHHHHHHcCCCceEEEEe-cCCCE--EEEEEEEEEECCCCCEEEEEEEEEe
Confidence 357776655532 3444555566666677653333332 35554 7788999999999999999999999
Q ss_pred ee
Q 042793 87 TE 88 (545)
Q Consensus 87 it 88 (545)
||
T Consensus 105 IT 106 (106)
T PF13596_consen 105 IT 106 (106)
T ss_dssp -G
T ss_pred cC
Confidence 97
No 91
>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A ....
Probab=96.50 E-value=0.027 Score=45.27 Aligned_cols=80 Identities=11% Similarity=0.019 Sum_probs=57.5
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHH-HHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCC-CCEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSS-VVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDD-ETITH 79 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~-g~~~~ 79 (545)
+.++|++|+.+-.+. ||++... ..+.....+..|+....-++...|+|...|+.....++.+.. +++-.
T Consensus 28 y~~~eLvG~s~y~~~---------H~~D~~~~~~~~~~~~~~~g~~~~~~yR~~~k~g~~vwvqt~~~~~~n~~~~~~~~ 98 (111)
T PF14598_consen 28 YLPEELVGRSIYDFV---------HPDDLQRVLKQHHREVLQKGQSVSPYYRFRTKNGGYVWVQTKATLFYNPWTSKPEF 98 (111)
T ss_dssp S-HHHHTTSBGGGGB---------SCCTHHHHHHHHHHHHHHHSSEEEEEEEEE-TTSSEEEEEEEEEEEEETTTTCEEE
T ss_pred CCcHHHcCCchHHhC---------CHhhhhhHHHHHHHHHhhCCCcCcceEEEEecCCcEEEEEEEEEEEECCCCCCccE
Confidence 567888998854332 2334554 556788888899987777889999999999999999998755 45556
Q ss_pred EEEEeeeeeec
Q 042793 80 VIGIQFFTEAN 90 (545)
Q Consensus 80 ~i~~~~Dite~ 90 (545)
++++.+=|+|.
T Consensus 99 Iv~~n~vlse~ 109 (111)
T PF14598_consen 99 IVCTNTVLSEE 109 (111)
T ss_dssp EEEEEEEESCE
T ss_pred EEEEEEEeccC
Confidence 67777766653
No 92
>PRK13684 Ycf48-like protein; Provisional
Probab=96.27 E-value=1.3 Score=43.49 Aligned_cols=244 Identities=12% Similarity=0.163 Sum_probs=115.8
Q ss_pred CCcEEeccCCCCCCCCC-ceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccC-CCCCCccceeEEEEcC
Q 042793 216 ATWRKLTVGGTVEPSRC-NFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVS-SPPPGRWGHTLSCVNG 293 (545)
Q Consensus 216 ~~W~~~~~~~~~p~~r~-~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~-~~~~~r~~~~~~~~~~ 293 (545)
..|+.+... .|.... ..++...++..|+.|... .++ -......+|+++... ..+. ..+.+..+.+
T Consensus 76 ~tW~~~~~~--~~~~~~~l~~v~~~~~~~~~~G~~g-------~i~--~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~ 142 (334)
T PRK13684 76 ETWEERSLD--LPEENFRLISISFKGDEGWIVGQPS-------LLL--HTTDGGKNWTRIPLSEKLPG--SPYLITALGP 142 (334)
T ss_pred CCceECccC--CcccccceeeeEEcCCcEEEeCCCc-------eEE--EECCCCCCCeEccCCcCCCC--CceEEEEECC
Confidence 578876442 111111 122333355566665321 233 233334589987522 1222 2233444555
Q ss_pred CEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCC
Q 042793 294 SHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEK 373 (545)
Q Consensus 294 ~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 373 (545)
+.+++.|... .++. ......+|+.+... ..-..+......++.+++.|.. + .++.- .+...
T Consensus 143 ~~~~~~g~~G------~i~~--S~DgG~tW~~~~~~---~~g~~~~i~~~~~g~~v~~g~~---G----~i~~s-~~~gg 203 (334)
T PRK13684 143 GTAEMATNVG------AIYR--TTDGGKNWEALVED---AAGVVRNLRRSPDGKYVAVSSR---G----NFYST-WEPGQ 203 (334)
T ss_pred Ccceeeeccc------eEEE--ECCCCCCceeCcCC---CcceEEEEEECCCCeEEEEeCC---c----eEEEE-cCCCC
Confidence 5677766421 2332 33233499988753 2223334444444445554432 1 23332 11334
Q ss_pred CceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCC
Q 042793 374 PVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPP 453 (545)
Q Consensus 374 ~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~ 453 (545)
.+|+.+.. +..+.-+++....++.++++|.. . ...+.......+|+.+... ....
T Consensus 204 ~tW~~~~~---~~~~~l~~i~~~~~g~~~~vg~~----------G-~~~~~s~d~G~sW~~~~~~-----------~~~~ 258 (334)
T PRK13684 204 TAWTPHQR---NSSRRLQSMGFQPDGNLWMLARG----------G-QIRFNDPDDLESWSKPIIP-----------EITN 258 (334)
T ss_pred CeEEEeeC---CCcccceeeeEcCCCCEEEEecC----------C-EEEEccCCCCCccccccCC-----------cccc
Confidence 57988853 44444455555555588888653 1 1223212124689976321 0111
Q ss_pred CcceEEEE-ecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCC
Q 042793 454 RLDHVAVS-LPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQ 527 (545)
Q Consensus 454 r~~~~~~~-~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~ 527 (545)
.....++. ..++.+++.|.. ..++.- .+ ...+|+.+......| ...+..+...+++.|+.|..
T Consensus 259 ~~~l~~v~~~~~~~~~~~G~~-------G~v~~S-~d-~G~tW~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 259 GYGYLDLAYRTPGEIWAGGGN-------GTLLVS-KD-GGKTWEKDPVGEEVP--SNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred ccceeeEEEcCCCCEEEEcCC-------CeEEEe-CC-CCCCCeECCcCCCCC--cceEEEEEeCCCceEEECCC
Confidence 12222333 335678887763 223322 22 256899985422333 23345555557888887764
No 93
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0041 Score=57.38 Aligned_cols=44 Identities=39% Similarity=0.809 Sum_probs=40.2
Q ss_pred cccchhhHHHHHhhccCChhhhhhHHHhhHHHHHhcCChhhHHHH
Q 042793 135 IFQLSDEVISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWRMV 179 (545)
Q Consensus 135 ~~~lp~~~~~~~~~~~l~~~~~~~~~~vcr~~~~l~~s~~~~~~~ 179 (545)
+..||||++ +.|++.|+..++.....|||||+.+.+.+.+|...
T Consensus 98 ~~slpDEil-l~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l 141 (419)
T KOG2120|consen 98 WDSLPDEIL-LGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL 141 (419)
T ss_pred cccCCHHHH-HHHHHhccHHHHHHHHHHHHHHhhccccccceeee
Confidence 678899999 69999999999999999999999999998888653
No 94
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.18 E-value=1.9 Score=45.34 Aligned_cols=127 Identities=19% Similarity=0.183 Sum_probs=69.9
Q ss_pred EcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCC-CCCCc----cceEEEEcCCEEEEEcCCCCCCCccCcEE
Q 042793 291 VNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAP-PLPRS----WHSSCTLDGTKLIVSGGCADSGVLLSDTF 365 (545)
Q Consensus 291 ~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~-~~~r~----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 365 (545)
+.+++||+.... +.++.+|..|....|+.-..... ..+.. .....++.++++|+... -..++
T Consensus 67 v~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ 133 (527)
T TIGR03075 67 VVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLV 133 (527)
T ss_pred EECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEE
Confidence 335688885432 36899999998889985432210 00100 01112344557776432 13589
Q ss_pred EEecCCCCCceEEecCCCCCCC-CCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEee
Q 042793 366 LLDLSMEKPVWREIPVTWTPPS-RLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVT 436 (545)
Q Consensus 366 ~~d~~~~~~~W~~~~~~~~p~~-r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~ 436 (545)
.+|..+.+..|+.-... .... ....+-++.++ ++|+-......+ ....++.||.++....|+.-.
T Consensus 134 ALDa~TGk~~W~~~~~~-~~~~~~~tssP~v~~g-~Vivg~~~~~~~----~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 134 ALDAKTGKVVWSKKNGD-YKAGYTITAAPLVVKG-KVITGISGGEFG----VRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred EEECCCCCEEeeccccc-ccccccccCCcEEECC-EEEEeecccccC----CCcEEEEEECCCCceeEeccC
Confidence 99988888889764321 1111 11222344555 666542211111 136788999987777887543
No 95
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.02 E-value=0.26 Score=48.56 Aligned_cols=126 Identities=21% Similarity=0.248 Sum_probs=72.8
Q ss_pred EEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCcc----CcE
Q 042793 289 SCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLL----SDT 364 (545)
Q Consensus 289 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~----~~~ 364 (545)
+.+.+++|+.++.. ....+||+.|. .-...+.+ +.+.....++.+ |++||++.......... ..+
T Consensus 72 ~al~gskIv~~d~~------~~t~vyDt~t~--av~~~P~l--~~pk~~pisv~V-G~~LY~m~~~~~~~~~~~~~~~~F 140 (342)
T PF07893_consen 72 FALHGSKIVAVDQS------GRTLVYDTDTR--AVATGPRL--HSPKRCPISVSV-GDKLYAMDRSPFPEPAGRPDFPCF 140 (342)
T ss_pred EEecCCeEEEEcCC------CCeEEEECCCC--eEeccCCC--CCCCcceEEEEe-CCeEEEeeccCccccccCccceeE
Confidence 33457789988664 34789999998 55555554 344444445556 55799997753321110 033
Q ss_pred EEE--e------cCCCCCceEEecCCCCCCCCC-------CcEEEEECCcEEEE-EcccCCCCCCccccCcEEEEeCCCC
Q 042793 365 FLL--D------LSMEKPVWREIPVTWTPPSRL-------GHTLSVYGGRKILM-FGGLAKSGPLRFRSSDVFTMDLSEE 428 (545)
Q Consensus 365 ~~~--d------~~~~~~~W~~~~~~~~p~~r~-------~~~~~~~~~~~lyi-~GG~~~~~~~~~~~~~i~~~d~~~~ 428 (545)
+.+ + .....+.|+.++. .|.... -.+-+++++..|+| .-+.. ...|.||..
T Consensus 141 E~l~~~~~~~~~~~~~~w~W~~LP~--PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~---------~GTysfDt~-- 207 (342)
T PF07893_consen 141 EALVYRPPPDDPSPEESWSWRSLPP--PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR---------WGTYSFDTE-- 207 (342)
T ss_pred EEeccccccccccCCCcceEEcCCC--CCccccCCcccceEEEEEEecCCeEEEEecCCc---------eEEEEEEcC--
Confidence 444 3 1234667888764 222221 12334445557777 32211 247899988
Q ss_pred CCceEEeecC
Q 042793 429 EPCWRCVTGS 438 (545)
Q Consensus 429 ~~~W~~v~~~ 438 (545)
+.+|+++..=
T Consensus 208 ~~~W~~~GdW 217 (342)
T PF07893_consen 208 SHEWRKHGDW 217 (342)
T ss_pred Ccceeeccce
Confidence 8899998544
No 96
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.87 E-value=2.2 Score=42.63 Aligned_cols=215 Identities=11% Similarity=0.130 Sum_probs=112.2
Q ss_pred eEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEe
Q 042793 236 ACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLD 315 (545)
Q Consensus 236 ~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 315 (545)
.+..++++|+... + ..++.+|+.+....|+..... -.... .+-....+++||+- ..+. .+++||
T Consensus 64 ~~~~dg~v~~~~~---~----G~i~A~d~~~g~~~W~~~~~~--~~~~~-~~~~~~~~G~i~~g-~~~g-----~~y~ld 127 (370)
T COG1520 64 PADGDGTVYVGTR---D----GNIFALNPDTGLVKWSYPLLG--AVAQL-SGPILGSDGKIYVG-SWDG-----KLYALD 127 (370)
T ss_pred cEeeCCeEEEecC---C----CcEEEEeCCCCcEEecccCcC--cceec-cCceEEeCCeEEEe-cccc-----eEEEEE
Confidence 3667888998721 1 179999999885569753321 00011 11111223466654 3322 689999
Q ss_pred cCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEE
Q 042793 316 LDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSV 395 (545)
Q Consensus 316 ~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~ 395 (545)
..+.+..|..-... . ++..-.. +..+..+|+.. ..+.++.+|..+.+..|+.-.... ...+...+..
T Consensus 128 ~~~G~~~W~~~~~~--~-~~~~~~~-v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~- 194 (370)
T COG1520 128 ASTGTLVWSRNVGG--S-PYYASPP-VVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPA- 194 (370)
T ss_pred CCCCcEEEEEecCC--C-eEEecCc-EEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-cccccccCce-
Confidence 98888899965543 2 3333233 33344566642 124588888777788898544311 1222222222
Q ss_pred ECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCC
Q 042793 396 YGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVA 475 (545)
Q Consensus 396 ~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~ 475 (545)
..++.+|+-... . ...++.+|+++.+..|..-.... .+..... ....+.++.|++-||.-
T Consensus 195 ~~~~~vy~~~~~-~-------~~~~~a~~~~~G~~~w~~~~~~~-------~~~~~~~----~~~~~~~~~v~v~~~~~- 254 (370)
T COG1520 195 IASGTVYVGSDG-Y-------DGILYALNAEDGTLKWSQKVSQT-------IGRTAIS----TTPAVDGGPVYVDGGVY- 254 (370)
T ss_pred eecceEEEecCC-C-------cceEEEEEccCCcEeeeeeeecc-------cCccccc----ccccccCceEEECCcEE-
Confidence 334366654221 1 14799999987788898532220 0101000 01112234444443310
Q ss_pred CCCCCCceEEEcCCCCCCceEEec
Q 042793 476 GLHSATQLYLLDPTEEKPTWRILN 499 (545)
Q Consensus 476 ~~~~~~~v~~~d~~~~~~~W~~~~ 499 (545)
.......++++|..+.+..|+.-.
T Consensus 255 ~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 255 AGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred EEecCCeEEEEEcCCCceEEEEec
Confidence 011234589999887777898864
No 97
>PRK13684 Ycf48-like protein; Provisional
Probab=95.81 E-value=2.1 Score=42.01 Aligned_cols=244 Identities=12% Similarity=0.166 Sum_probs=113.0
Q ss_pred ccCCcEEeccCCCCCCCCCceeeEEE-CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEc
Q 042793 214 EAATWRKLTVGGTVEPSRCNFSACAV-GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVN 292 (545)
Q Consensus 214 ~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~ 292 (545)
....|+.... |....-..++.. .+..|++|-.. . +|-......+|+++.. .++........+.+.
T Consensus 33 ~~~~W~~~~~----~~~~~l~~v~F~d~~~g~avG~~G-------~--il~T~DgG~tW~~~~~-~~~~~~~~l~~v~~~ 98 (334)
T PRK13684 33 SSSPWQVIDL----PTEANLLDIAFTDPNHGWLVGSNR-------T--LLETNDGGETWEERSL-DLPEENFRLISISFK 98 (334)
T ss_pred cCCCcEEEec----CCCCceEEEEEeCCCcEEEEECCC-------E--EEEEcCCCCCceECcc-CCcccccceeeeEEc
Confidence 3456877743 222222333333 34667777321 2 2322233458998642 222222212222333
Q ss_pred CCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCC
Q 042793 293 GSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSME 372 (545)
Q Consensus 293 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 372 (545)
++..+++|.. --+|-......+|+.+.... ..+........+.++.+++.|.. ..+++-+ ..
T Consensus 99 ~~~~~~~G~~--------g~i~~S~DgG~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~--Dg 160 (334)
T PRK13684 99 GDEGWIVGQP--------SLLLHTTDGGKNWTRIPLSE-KLPGSPYLITALGPGTAEMATNV-------GAIYRTT--DG 160 (334)
T ss_pred CCcEEEeCCC--------ceEEEECCCCCCCeEccCCc-CCCCCceEEEEECCCcceeeecc-------ceEEEEC--CC
Confidence 4456766531 12343444445999886421 12222223344444456666542 1234433 55
Q ss_pred CCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEE-eCCCCCCceEEeecCCCCCCCCCCCCCC
Q 042793 373 KPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTM-DLSEEEPCWRCVTGSGMPGAGNPGGIAP 451 (545)
Q Consensus 373 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~-d~~~~~~~W~~v~~~~~~~~~~~~g~~p 451 (545)
..+|+.+.. +..-..+.+....++.++++|.. ..++.- |-. ..+|+.+...
T Consensus 161 G~tW~~~~~---~~~g~~~~i~~~~~g~~v~~g~~----------G~i~~s~~~g--g~tW~~~~~~------------- 212 (334)
T PRK13684 161 GKNWEALVE---DAAGVVRNLRRSPDGKYVAVSSR----------GNFYSTWEPG--QTAWTPHQRN------------- 212 (334)
T ss_pred CCCceeCcC---CCcceEEEEEECCCCeEEEEeCC----------ceEEEEcCCC--CCeEEEeeCC-------------
Confidence 679998864 22223344444455455555432 333332 222 4579987532
Q ss_pred CCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEc-CCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCC
Q 042793 452 PPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLD-PTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQ 527 (545)
Q Consensus 452 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d-~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~ 527 (545)
..+.........++.++++|... ...+. .+ ....|+.+..+..... ..-++.....++.+++.|..
T Consensus 213 ~~~~l~~i~~~~~g~~~~vg~~G--------~~~~~s~d-~G~sW~~~~~~~~~~~-~~l~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWMLARGG--------QIRFNDPD-DLESWSKPIIPEITNG-YGYLDLAYRTPGEIWAGGGN 279 (334)
T ss_pred CcccceeeeEcCCCCEEEEecCC--------EEEEccCC-CCCccccccCCccccc-cceeeEEEcCCCCEEEEcCC
Confidence 23333334444477888886531 22332 22 2458998643111111 11122223335678887654
No 98
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.78 E-value=2.5 Score=42.46 Aligned_cols=245 Identities=12% Similarity=0.158 Sum_probs=113.1
Q ss_pred cCCcEEeccCCCC-CCCC-CceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCC-CCCCccceeEEEE
Q 042793 215 AATWRKLTVGGTV-EPSR-CNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSS-PPPGRWGHTLSCV 291 (545)
Q Consensus 215 ~~~W~~~~~~~~~-p~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~-~~~~r~~~~~~~~ 291 (545)
...|.....+... +... ....+...++..|+.|-. -.+|-......+|+++.... +|.. ......+
T Consensus 119 G~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~---------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~ 187 (398)
T PLN00033 119 GKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP---------AILLHTSDGGETWERIPLSPKLPGE--PVLIKAT 187 (398)
T ss_pred CCCceECccCcccccccccceeeeEEECCEEEEEcCc---------eEEEEEcCCCCCceECccccCCCCC--ceEEEEE
Confidence 3578775332111 1111 123444457778888632 13343344456999876322 2332 2333345
Q ss_pred cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCC--CCCCC--------------ccceEEEEcCCEEEEEcCCC
Q 042793 292 NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLA--PPLPR--------------SWHSSCTLDGTKLIVSGGCA 355 (545)
Q Consensus 292 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~--~~~~r--------------~~~~~~~~~~~~iyv~GG~~ 355 (545)
.++.++++|... .++.- .....+|+.+.... .+..+ .........++.++++|-..
T Consensus 188 ~~~~~~ivg~~G------~v~~S--~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G 259 (398)
T PLN00033 188 GPKSAEMVTDEG------AIYVT--SNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG 259 (398)
T ss_pred CCCceEEEeccc------eEEEE--CCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc
Confidence 455677877422 23332 22334899763211 01111 11111222333455554321
Q ss_pred CCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCC-----
Q 042793 356 DSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEP----- 430 (545)
Q Consensus 356 ~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~----- 430 (545)
.++.-. +.....|+.+.. +.++.-.++....++.++++|.. ..++.-+-. ..
T Consensus 260 -------~~~~s~-d~G~~~W~~~~~---~~~~~l~~v~~~~dg~l~l~g~~----------G~l~~S~d~--G~~~~~~ 316 (398)
T PLN00033 260 -------NFYLTW-EPGQPYWQPHNR---ASARRIQNMGWRADGGLWLLTRG----------GGLYVSKGT--GLTEEDF 316 (398)
T ss_pred -------cEEEec-CCCCcceEEecC---CCccceeeeeEcCCCCEEEEeCC----------ceEEEecCC--CCccccc
Confidence 233322 122224888863 44444444544455588888753 333333322 33
Q ss_pred ceEEeecCCCCCCCCCCCCCCCCCcceEEEE-ecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCC
Q 042793 431 CWRCVTGSGMPGAGNPGGIAPPPRLDHVAVS-LPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAW 509 (545)
Q Consensus 431 ~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~-~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~ 509 (545)
+|.++.. +..+..-..+. ..++.+++.|.. .-++.-.. ...+|+........+...+
T Consensus 317 ~f~~~~~-------------~~~~~~l~~v~~~~d~~~~a~G~~-------G~v~~s~D--~G~tW~~~~~~~~~~~~ly 374 (398)
T PLN00033 317 DFEEADI-------------KSRGFGILDVGYRSKKEAWAAGGS-------GILLRSTD--GGKSWKRDKGADNIAANLY 374 (398)
T ss_pred ceeeccc-------------CCCCcceEEEEEcCCCcEEEEECC-------CcEEEeCC--CCcceeEccccCCCCccee
Confidence 3444421 11222223333 336678888763 22444333 2568999854333333322
Q ss_pred CceeEEeCCeeEEEEc
Q 042793 510 GHSTCVVGGTRTIVLG 525 (545)
Q Consensus 510 ~~~~~~~~~~~l~i~G 525 (545)
......+++.|+.|
T Consensus 375 --~v~f~~~~~g~~~G 388 (398)
T PLN00033 375 --SVKFFDDKKGFVLG 388 (398)
T ss_pred --EEEEcCCCceEEEe
Confidence 33334457888877
No 99
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.54 E-value=2.4 Score=40.68 Aligned_cols=244 Identities=15% Similarity=0.200 Sum_probs=105.1
Q ss_pred CCcEEeccCCCCCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCE
Q 042793 216 ATWRKLTVGGTVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSH 295 (545)
Q Consensus 216 ~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~ 295 (545)
..|.........+......++...++..|+.|.. .+ +|-......+|++++.. .+.|-..+.+..+.++.
T Consensus 47 ~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~--------g~-ll~T~DgG~tW~~v~l~-~~lpgs~~~i~~l~~~~ 116 (302)
T PF14870_consen 47 KTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP--------GL-LLHTTDGGKTWERVPLS-SKLPGSPFGITALGDGS 116 (302)
T ss_dssp SS-EE-----S-----EEEEEEEETTEEEEEEET--------TE-EEEESSTTSS-EE-----TT-SS-EEEEEEEETTE
T ss_pred ccccccccCCCccceeeEEEEEecCCceEEEcCC--------ce-EEEecCCCCCcEEeecC-CCCCCCeeEEEEcCCCc
Confidence 5788875422211111122334457888988742 12 23333345699997532 22233345566666778
Q ss_pred EEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEE-EEecCCCCC
Q 042793 296 LVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTF-LLDLSMEKP 374 (545)
Q Consensus 296 iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~-~~d~~~~~~ 374 (545)
++++|... -+|-......+|+.+... . .-.........++++++++... .++ ..| +...
T Consensus 117 ~~l~~~~G--------~iy~T~DgG~tW~~~~~~--~-~gs~~~~~r~~dG~~vavs~~G-------~~~~s~~--~G~~ 176 (302)
T PF14870_consen 117 AELAGDRG--------AIYRTTDGGKTWQAVVSE--T-SGSINDITRSSDGRYVAVSSRG-------NFYSSWD--PGQT 176 (302)
T ss_dssp EEEEETT----------EEEESSTTSSEEEEE-S-------EEEEEE-TTS-EEEEETTS-------SEEEEE---TT-S
T ss_pred EEEEcCCC--------cEEEeCCCCCCeeEcccC--C-cceeEeEEECCCCcEEEEECcc-------cEEEEec--CCCc
Confidence 88876431 234344444599987653 1 1222223334455666665431 233 345 5556
Q ss_pred ceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCC--
Q 042793 375 VWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPP-- 452 (545)
Q Consensus 375 ~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~-- 452 (545)
.|+... .+..|.-.++....++.|+++.-. ..++.-+...+..+|.+... |.
T Consensus 177 ~w~~~~---r~~~~riq~~gf~~~~~lw~~~~G----------g~~~~s~~~~~~~~w~~~~~-------------~~~~ 230 (302)
T PF14870_consen 177 TWQPHN---RNSSRRIQSMGFSPDGNLWMLARG----------GQIQFSDDPDDGETWSEPII-------------PIKT 230 (302)
T ss_dssp S-EEEE-----SSS-EEEEEE-TTS-EEEEETT----------TEEEEEE-TTEEEEE---B--------------TTSS
T ss_pred cceEEc---cCccceehhceecCCCCEEEEeCC----------cEEEEccCCCCccccccccC-------------Cccc
Confidence 798876 455566666766666688887511 23333331112457877321 22
Q ss_pred CCcceEEEEe-cCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcC
Q 042793 453 PRLDHVAVSL-PGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGG 526 (545)
Q Consensus 453 ~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG 526 (545)
...+...+.. .++.+++.||.. .++ +..+ ...+|++.......|.. .........++-|++|-
T Consensus 231 ~~~~~ld~a~~~~~~~wa~gg~G-------~l~-~S~D-gGktW~~~~~~~~~~~n--~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 231 NGYGILDLAYRPPNEIWAVGGSG-------TLL-VSTD-GGKTWQKDRVGENVPSN--LYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp --S-EEEEEESSSS-EEEEESTT--------EE-EESS-TTSS-EE-GGGTTSSS-----EEEEEETTEEEEE-S
T ss_pred CceeeEEEEecCCCCEEEEeCCc-------cEE-EeCC-CCccceECccccCCCCc--eEEEEEcCCCceEEECC
Confidence 2233333333 357899998842 233 3333 36789998654444432 23444444678888884
No 100
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.36 E-value=0.9 Score=44.72 Aligned_cols=126 Identities=19% Similarity=0.219 Sum_probs=72.7
Q ss_pred ECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccC-----cEEE
Q 042793 239 VGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLN-----DVFV 313 (545)
Q Consensus 239 ~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~-----~~~~ 313 (545)
.+++|+..+.. ..+.+||..+. .-...+ .++.+...-.++.+ +++||++.......... .+++
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~--av~~~P--~l~~pk~~pisv~V-G~~LY~m~~~~~~~~~~~~~~~~FE~ 142 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTR--AVATGP--RLHSPKRCPISVSV-GDKLYAMDRSPFPEPAGRPDFPCFEA 142 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCC--eEeccC--CCCCCCcceEEEEe-CCeEEEeeccCccccccCccceeEEE
Confidence 48999998764 26899999887 544333 44444444444445 55799998764332111 4455
Q ss_pred E--ec------CCCCCceEeccCCCCCCCCcc-------ceEEEEcCCEEEE-EcCCCCCCCccCcEEEEecCCCCCceE
Q 042793 314 L--DL------DAKPPTWREISGLAPPLPRSW-------HSSCTLDGTKLIV-SGGCADSGVLLSDTFLLDLSMEKPVWR 377 (545)
Q Consensus 314 y--d~------~t~~~~W~~~~~~~~~~~r~~-------~~~~~~~~~~iyv-~GG~~~~~~~~~~~~~~d~~~~~~~W~ 377 (545)
+ ++ .....+|+.+++. |..+.. .+-++++|..|+| .-|.. .-.|.|| +.+.+|+
T Consensus 143 l~~~~~~~~~~~~~~w~W~~LP~P--Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfD--t~~~~W~ 212 (342)
T PF07893_consen 143 LVYRPPPDDPSPEESWSWRSLPPP--PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFD--TESHEWR 212 (342)
T ss_pred eccccccccccCCCcceEEcCCCC--CccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEE--cCCccee
Confidence 4 41 2333467777753 333322 1222336778888 33321 1268999 5577999
Q ss_pred EecCCCCCC
Q 042793 378 EIPVTWTPP 386 (545)
Q Consensus 378 ~~~~~~~p~ 386 (545)
++..=.+|.
T Consensus 213 ~~GdW~LPF 221 (342)
T PF07893_consen 213 KHGDWMLPF 221 (342)
T ss_pred eccceecCc
Confidence 986533443
No 101
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.15 E-value=5.1 Score=42.11 Aligned_cols=130 Identities=12% Similarity=0.063 Sum_probs=73.0
Q ss_pred eeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCC-CC-----ccceeEEEEcCCEEEEEcCCCCCcc
Q 042793 234 FSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPP-PG-----RWGHTLSCVNGSHLVVFGGCGRQGL 307 (545)
Q Consensus 234 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~-~~-----r~~~~~~~~~~~~iyv~GG~~~~~~ 307 (545)
.+.++.++.||+.... ..++.+|..|....|+.-...+.. .+ ......+ +.+++||+...
T Consensus 63 stPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~a-v~~~~v~v~t~------ 128 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVA-LYDGKVFFGTL------ 128 (527)
T ss_pred cCCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccce-EECCEEEEEcC------
Confidence 4556778999986542 269999999887889853211100 00 0111223 34557776432
Q ss_pred cCcEEEEecCCCCCceEeccCCCCCCC-CccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEec
Q 042793 308 LNDVFVLDLDAKPPTWREISGLAPPLP-RSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIP 380 (545)
Q Consensus 308 ~~~~~~yd~~t~~~~W~~~~~~~~~~~-r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 380 (545)
-..++++|..|....|+.-.... ... ....+.++. ++.+|+-....+ ......++.||..+....|+.-.
T Consensus 129 dg~l~ALDa~TGk~~W~~~~~~~-~~~~~~tssP~v~-~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 129 DARLVALDAKTGKVVWSKKNGDY-KAGYTITAAPLVV-KGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CCEEEEEECCCCCEEeecccccc-cccccccCCcEEE-CCEEEEeecccc-cCCCcEEEEEECCCCceeEeccC
Confidence 13689999999988898533210 111 111122334 557766422111 11235688999888888887543
No 102
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.99 E-value=2.3 Score=41.92 Aligned_cols=150 Identities=11% Similarity=0.163 Sum_probs=78.7
Q ss_pred cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCC-CCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEec
Q 042793 292 NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAP-PLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDL 369 (545)
Q Consensus 292 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~-~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~ 369 (545)
...-+.+.+|.++. -.++..|=++| ..+.++.. ..|.. +++.. +|....+++|.. .-+|.||+
T Consensus 223 p~~plllvaG~d~~---lrifqvDGk~N----~~lqS~~l~~fPi~--~a~f~p~G~~~i~~s~rr------ky~ysyDl 287 (514)
T KOG2055|consen 223 PTAPLLLVAGLDGT---LRIFQVDGKVN----PKLQSIHLEKFPIQ--KAEFAPNGHSVIFTSGRR------KYLYSYDL 287 (514)
T ss_pred CCCceEEEecCCCc---EEEEEecCccC----hhheeeeeccCccc--eeeecCCCceEEEecccc------eEEEEeec
Confidence 34468888887753 23455555565 24444310 11111 22222 454477777753 24789997
Q ss_pred CCCCCceEEecCC-CCCCCCCCcEE-EEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCC
Q 042793 370 SMEKPVWREIPVT-WTPPSRLGHTL-SVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPG 447 (545)
Q Consensus 370 ~~~~~~W~~~~~~-~~p~~r~~~~~-~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~ 447 (545)
. +.+-+++... +++ .+..+.. +...+ .++++-|. ...|+.+... +++|..--..
T Consensus 288 e--~ak~~k~~~~~g~e-~~~~e~FeVShd~-~fia~~G~---------~G~I~lLhak--T~eli~s~Ki--------- 343 (514)
T KOG2055|consen 288 E--TAKVTKLKPPYGVE-EKSMERFEVSHDS-NFIAIAGN---------NGHIHLLHAK--TKELITSFKI--------- 343 (514)
T ss_pred c--ccccccccCCCCcc-cchhheeEecCCC-CeEEEccc---------CceEEeehhh--hhhhhheeee---------
Confidence 6 4466666532 222 2222333 23344 56666564 3667777777 7777532111
Q ss_pred CCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCC
Q 042793 448 GIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEE 491 (545)
Q Consensus 448 g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~ 491 (545)
..+....++...+.+|++.||. ..||++|+..+
T Consensus 344 ----eG~v~~~~fsSdsk~l~~~~~~-------GeV~v~nl~~~ 376 (514)
T KOG2055|consen 344 ----EGVVSDFTFSSDSKELLASGGT-------GEVYVWNLRQN 376 (514)
T ss_pred ----ccEEeeEEEecCCcEEEEEcCC-------ceEEEEecCCc
Confidence 1222233333434567778773 58999999643
No 103
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.72 E-value=4.6 Score=39.52 Aligned_cols=150 Identities=15% Similarity=0.043 Sum_probs=70.5
Q ss_pred EEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEE-EcCCEEEEEcCCCCCcccCcEEEEecC-CC
Q 042793 242 RVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSC-VNGSHLVVFGGCGRQGLLNDVFVLDLD-AK 319 (545)
Q Consensus 242 ~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~-t~ 319 (545)
.+|+..+.+ +.+.+||+.++ .+++.+... +..-..+.++. -+++.||+.+.. .+.+.+|++. +.
T Consensus 3 ~~y~~~~~~------~~I~~~~~~~~-g~l~~~~~~--~~~~~~~~l~~spd~~~lyv~~~~-----~~~i~~~~~~~~g 68 (330)
T PRK11028 3 IVYIASPES------QQIHVWNLNHE-GALTLLQVV--DVPGQVQPMVISPDKRHLYVGVRP-----EFRVLSYRIADDG 68 (330)
T ss_pred EEEEEcCCC------CCEEEEEECCC-CceeeeeEE--ecCCCCccEEECCCCCEEEEEECC-----CCcEEEEEECCCC
Confidence 467765432 36888888542 256554421 11111122222 245567775431 2467778776 33
Q ss_pred CCceEeccCCCCCCC-CccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEEC-
Q 042793 320 PPTWREISGLAPPLP-RSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYG- 397 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~-r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~- 397 (545)
+++.+... +.+ ...|.+..-+++.+|+..-. .+.+.+|+++.+......+.. .+.....|.++...
T Consensus 69 --~l~~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~~--~~~~~~~~~~~~~p~ 136 (330)
T PRK11028 69 --ALTFAAES--PLPGSPTHISTDHQGRFLFSASYN------ANCVSVSPLDKDGIPVAPIQI--IEGLEGCHSANIDPD 136 (330)
T ss_pred --ceEEeeee--cCCCCceEEEECCCCCEEEEEEcC------CCeEEEEEECCCCCCCCceee--ccCCCcccEeEeCCC
Confidence 56544432 111 11122222245567775421 145777876432212222211 11112235554443
Q ss_pred CcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 398 GRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 398 ~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
++.+|+..-. .+.|++||+.
T Consensus 137 g~~l~v~~~~---------~~~v~v~d~~ 156 (330)
T PRK11028 137 NRTLWVPCLK---------EDRIRLFTLS 156 (330)
T ss_pred CCEEEEeeCC---------CCEEEEEEEC
Confidence 3356654421 4678888886
No 104
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=94.50 E-value=0.11 Score=55.61 Aligned_cols=79 Identities=14% Similarity=-0.007 Sum_probs=54.7
Q ss_pred cccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeE-EEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 3 DLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEF-QGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
+.++++|+++..+..+ .......+.+.+..+... ..++...+++|..+ +.++..|+.+++|++.+++
T Consensus 298 ~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~g~~~~~i 365 (607)
T PRK11360 298 QRHELVGKPYSELFPP-----------NTPFASPLLDTLEHGTEHVDLEISFPGRDRTIE-LSVSTSLLHNTHGEMIGAL 365 (607)
T ss_pred ChHHhcCCcHHHHcCC-----------chhHHHHHHHHHhcCCCccceEEEEEcCCCcEE-EEEEEeeEEcCCCCEEEEE
Confidence 3445666665544431 223344555555555433 34566678888876 8899999999999999999
Q ss_pred EEeeeeeecccC
Q 042793 82 GIQFFTEANVDL 93 (545)
Q Consensus 82 ~~~~Dite~~~~ 93 (545)
++.+|||++++.
T Consensus 366 ~~~~Dite~~~~ 377 (607)
T PRK11360 366 VIFSDLTERKRL 377 (607)
T ss_pred EEEeechHHHHH
Confidence 999999999854
No 105
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.30 E-value=6.3 Score=39.26 Aligned_cols=218 Identities=17% Similarity=0.159 Sum_probs=105.7
Q ss_pred EECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecC
Q 042793 238 AVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLD 317 (545)
Q Consensus 238 ~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 317 (545)
-.+++|+..|+..+ .+-+||..+. ..-+.+.....|..+ +-....++.+++.|+.+.- +-.+|..
T Consensus 77 R~DG~LlaaGD~sG------~V~vfD~k~r-~iLR~~~ah~apv~~---~~f~~~d~t~l~s~sDd~v-----~k~~d~s 141 (487)
T KOG0310|consen 77 RSDGRLLAAGDESG------HVKVFDMKSR-VILRQLYAHQAPVHV---TKFSPQDNTMLVSGSDDKV-----VKYWDLS 141 (487)
T ss_pred ecCCeEEEccCCcC------cEEEeccccH-HHHHHHhhccCceeE---EEecccCCeEEEecCCCce-----EEEEEcC
Confidence 34689999998643 6888995542 111222211222222 2222346689998875432 3334444
Q ss_pred CCCCceEecc-CCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEE
Q 042793 318 AKPPTWREIS-GLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVY 396 (545)
Q Consensus 318 t~~~~W~~~~-~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 396 (545)
+. . ..+. ....-.-|++ .+.-.+++|++.||++. .+-.||+...+ .|..--..+.|.. .++.+
T Consensus 142 ~a--~-v~~~l~~htDYVR~g--~~~~~~~hivvtGsYDg------~vrl~DtR~~~-~~v~elnhg~pVe----~vl~l 205 (487)
T KOG0310|consen 142 TA--Y-VQAELSGHTDYVRCG--DISPANDHIVVTGSYDG------KVRLWDTRSLT-SRVVELNHGCPVE----SVLAL 205 (487)
T ss_pred Cc--E-EEEEecCCcceeEee--ccccCCCeEEEecCCCc------eEEEEEeccCC-ceeEEecCCCcee----eEEEc
Confidence 44 2 1111 0011222332 22223458999999853 36778865544 4443222233322 23334
Q ss_pred CCc-EEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcce-----EEEEecCCEEEEE
Q 042793 397 GGR-KILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDH-----VAVSLPGGRILIF 470 (545)
Q Consensus 397 ~~~-~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~-----~~~~~~~~~l~v~ 470 (545)
.++ .|...|| +.+.++|+.+.. +. +..+..| |.....++.=++-
T Consensus 206 psgs~iasAgG-----------n~vkVWDl~~G~---ql----------------l~~~~~H~KtVTcL~l~s~~~rLlS 255 (487)
T KOG0310|consen 206 PSGSLIASAGG-----------NSVKVWDLTTGG---QL----------------LTSMFNHNKTVTCLRLASDSTRLLS 255 (487)
T ss_pred CCCCEEEEcCC-----------CeEEEEEecCCc---ee----------------hhhhhcccceEEEEEeecCCceEee
Confidence 432 4444455 455555765211 11 1222212 2222224456667
Q ss_pred cCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCC
Q 042793 471 GGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTG 529 (545)
Q Consensus 471 GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~ 529 (545)
||.+ ..+-+||+. .|+.+..- ..|.|- -++.+..+++.+++|+.++
T Consensus 256 ~sLD------~~VKVfd~t----~~Kvv~s~-~~~~pv--Lsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 256 GSLD------RHVKVFDTT----NYKVVHSW-KYPGPV--LSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred cccc------cceEEEEcc----ceEEEEee-ecccce--eeEEecCCCceEEEecccc
Confidence 7754 568889964 46666432 223322 2333445778888887664
No 106
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=94.19 E-value=0.033 Score=50.42 Aligned_cols=78 Identities=19% Similarity=0.392 Sum_probs=64.1
Q ss_pred cccCcccchhhHHHHHhhccCCh-hhhhhHHHhhHHHHHhcCChhhHHHHhhhcccCCceeceeccCCccccccchhhhh
Q 042793 131 EVCGIFQLSDEVISLKILSWLSP-RDIASVGSVCRRFYELTKNEDLWRMVCQNAWGSETTRVLETVPGAKRLGWGRLARE 209 (545)
Q Consensus 131 ~~~~~~~lp~~~~~~~~~~~l~~-~~~~~~~~vcr~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 209 (545)
+...+..||.++. +.|+.+++. .|+.+++.+--.+..|+....+|+.+|+..+.+.......-..-.....|+.++..
T Consensus 198 ~~ltl~dLP~e~v-l~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~ 276 (332)
T KOG3926|consen 198 AGLTLHDLPLECV-LNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQ 276 (332)
T ss_pred CCCCcccchHHHH-HHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHH
Confidence 5677889999999 689999987 89999999999999999988899999999988876554444444556788887654
No 107
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.16 E-value=5.6 Score=38.18 Aligned_cols=196 Identities=18% Similarity=0.286 Sum_probs=88.8
Q ss_pred ceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCC-CccceEEEEcCCEE
Q 042793 270 EWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLP-RSWHSSCTLDGTKL 348 (545)
Q Consensus 270 ~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~-r~~~~~~~~~~~~i 348 (545)
.|+.+. .|.......+...+.+.-|++|-.. .+|-......+|+...... +.+ .+...++...++..
T Consensus 7 ~W~~v~---l~t~~~l~dV~F~d~~~G~~VG~~g--------~il~T~DGG~tW~~~~~~~-~~~~~~~l~~I~f~~~~g 74 (302)
T PF14870_consen 7 SWQQVS---LPTDKPLLDVAFVDPNHGWAVGAYG--------TILKTTDGGKTWQPVSLDL-DNPFDYHLNSISFDGNEG 74 (302)
T ss_dssp -EEEEE----S-SS-EEEEEESSSS-EEEEETTT--------EEEEESSTTSS-EE------S-----EEEEEEEETTEE
T ss_pred CcEEee---cCCCCceEEEEEecCCEEEEEecCC--------EEEEECCCCccccccccCC-CccceeeEEEEEecCCce
Confidence 899885 4444444566666777889998531 3444444456999876421 222 23333444456788
Q ss_pred EEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCC
Q 042793 349 IVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEE 428 (545)
Q Consensus 349 yv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~ 428 (545)
||.|.. + .+|.......+|++++.. .+.+...+.+..++++.++++|.. ..||+=. ..
T Consensus 75 ~ivG~~---g------~ll~T~DgG~tW~~v~l~-~~lpgs~~~i~~l~~~~~~l~~~~----------G~iy~T~--Dg 132 (302)
T PF14870_consen 75 WIVGEP---G------LLLHTTDGGKTWERVPLS-SKLPGSPFGITALGDGSAELAGDR----------GAIYRTT--DG 132 (302)
T ss_dssp EEEEET---T------EEEEESSTTSS-EE-----TT-SS-EEEEEEEETTEEEEEETT------------EEEES--ST
T ss_pred EEEcCC---c------eEEEecCCCCCcEEeecC-CCCCCCeeEEEEcCCCcEEEEcCC----------CcEEEeC--CC
Confidence 988742 1 234333567799998642 222333345555566578777642 3454333 23
Q ss_pred CCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceE-EEcCCCCCCceEEeccCCCCCCC
Q 042793 429 EPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLY-LLDPTEEKPTWRILNVPGRPPRF 507 (545)
Q Consensus 429 ~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~-~~d~~~~~~~W~~~~~~~~~p~~ 507 (545)
..+|+.+... . .-.-.......++++++++-. ..++ ..|+. ...|...+. +..
T Consensus 133 G~tW~~~~~~------------~-~gs~~~~~r~~dG~~vavs~~-------G~~~~s~~~G--~~~w~~~~r----~~~ 186 (302)
T PF14870_consen 133 GKTWQAVVSE------------T-SGSINDITRSSDGRYVAVSSR-------GNFYSSWDPG--QTTWQPHNR----NSS 186 (302)
T ss_dssp TSSEEEEE-S-----------------EEEEEE-TTS-EEEEETT-------SSEEEEE-TT---SS-EEEE------SS
T ss_pred CCCeeEcccC------------C-cceeEeEEECCCCcEEEEECc-------ccEEEEecCC--CccceEEcc----Ccc
Confidence 6789987643 1 111122333446777767542 3344 45663 456888743 223
Q ss_pred CCCceeEEeCCeeEEEEc
Q 042793 508 AWGHSTCVVGGTRTIVLG 525 (545)
Q Consensus 508 r~~~~~~~~~~~~l~i~G 525 (545)
|.-.++....++.|+++.
T Consensus 187 ~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 187 RRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp S-EEEEEE-TTS-EEEEE
T ss_pred ceehhceecCCCCEEEEe
Confidence 333444444556666643
No 108
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.02 E-value=6.9 Score=38.67 Aligned_cols=240 Identities=15% Similarity=0.151 Sum_probs=113.1
Q ss_pred CceEEEeCCCCCCceEEeccC-CCCCCccceeEEEE--cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCC
Q 042793 257 NDTFVLDLNSSNPEWQHVHVS-SPPPGRWGHTLSCV--NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPL 333 (545)
Q Consensus 257 ~~~~~~d~~t~~~~W~~~~~~-~~~~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~ 333 (545)
..++.|+++....+++.+... ....|.+ .++ .++.||+..... .....+..|++..++.+.+.+... +.
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~----l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~--~~ 84 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSW----LAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSV--PS 84 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECC----EEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEE--EE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCce----EEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeee--cc
Confidence 456666653333388766521 1222222 233 667899986543 122456666555432277766543 21
Q ss_pred CCccceEEEE--cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEec-------CCC---CCCCCCCcEEEEEC-CcE
Q 042793 334 PRSWHSSCTL--DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIP-------VTW---TPPSRLGHTLSVYG-GRK 400 (545)
Q Consensus 334 ~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~-------~~~---~p~~r~~~~~~~~~-~~~ 400 (545)
.-...+.+.+ +++.+|+..-. -+.+.+|+++.. ..-.... .++ ....-..|.+.... ++.
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~------~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~ 157 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYG------GGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF 157 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETT------TTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE
T ss_pred CCCCcEEEEEecCCCEEEEEEcc------CCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCE
Confidence 1112122333 45566765321 134777776543 1222110 000 11223446665554 346
Q ss_pred EEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCC-cceEEEEecCCEEEEEcCcCCCCCC
Q 042793 401 ILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPR-LDHVAVSLPGGRILIFGGSVAGLHS 479 (545)
Q Consensus 401 lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r-~~~~~~~~~~~~l~v~GG~~~~~~~ 479 (545)
+|+..-. .+.|+.|+.+..+.+........ .|..- -.|..+.-.+..+||+...
T Consensus 158 v~v~dlG---------~D~v~~~~~~~~~~~l~~~~~~~----------~~~G~GPRh~~f~pdg~~~Yv~~e~------ 212 (345)
T PF10282_consen 158 VYVPDLG---------ADRVYVYDIDDDTGKLTPVDSIK----------VPPGSGPRHLAFSPDGKYAYVVNEL------ 212 (345)
T ss_dssp EEEEETT---------TTEEEEEEE-TTS-TEEEEEEEE----------CSTTSSEEEEEE-TTSSEEEEEETT------
T ss_pred EEEEecC---------CCEEEEEEEeCCCceEEEeeccc----------cccCCCCcEEEEcCCcCEEEEecCC------
Confidence 7765321 47888888874343455433220 12111 1344443334578898653
Q ss_pred CCceEEEcCCCCCCceEEeccCCCCCC---CCCCceeEEeC--CeeEEEEcCCCCcccccccceeeee
Q 042793 480 ATQLYLLDPTEEKPTWRILNVPGRPPR---FAWGHSTCVVG--GTRTIVLGGQTGEEWMLSELHELSL 542 (545)
Q Consensus 480 ~~~v~~~d~~~~~~~W~~~~~~~~~p~---~r~~~~~~~~~--~~~l~i~GG~~~~~~~~~~~~~l~l 542 (545)
.+.|.+|+....+..++.++.....|. .....+.+.+. +..||+--.. .+.|.+|++
T Consensus 213 s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------~~sI~vf~~ 274 (345)
T PF10282_consen 213 SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------SNSISVFDL 274 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT------TTEEEEEEE
T ss_pred CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc------CCEEEEEEE
Confidence 467777777634556766654333322 22133344443 4567773321 255666666
No 109
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.75 E-value=5.8 Score=36.90 Aligned_cols=203 Identities=11% Similarity=0.119 Sum_probs=101.4
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
++.||+..-. -..++++|+.+. .-..+. .+. ..+++.. .++++|+... ....++|+.+
T Consensus 11 ~g~l~~~D~~------~~~i~~~~~~~~--~~~~~~---~~~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~ 69 (246)
T PF08450_consen 11 DGRLYWVDIP------GGRIYRVDPDTG--EVEVID---LPG---PNGMAFDRPDGRLYVADS-------GGIAVVDPDT 69 (246)
T ss_dssp TTEEEEEETT------TTEEEEEETTTT--EEEEEE---SSS---EEEEEEECTTSEEEEEET-------TCEEEEETTT
T ss_pred CCEEEEEEcC------CCEEEEEECCCC--eEEEEe---cCC---CceEEEEccCCEEEEEEc-------CceEEEecCC
Confidence 4667776421 238999999886 444333 222 2344444 4668888754 2456779999
Q ss_pred CCCceEeccCCC--C-CCCCccceEEEEcCCEEEEEcCCCCCCCcc--CcEEEEecCCCCCceEEecCCCCCCCCCCcEE
Q 042793 319 KPPTWREISGLA--P-PLPRSWHSSCTLDGTKLIVSGGCADSGVLL--SDTFLLDLSMEKPVWREIPVTWTPPSRLGHTL 393 (545)
Q Consensus 319 ~~~~W~~~~~~~--~-~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~ 393 (545)
. +++.+.... . +..+... .++-.++.+|+-.-........ ..+++++.+ .+.+.+... +. ....+
T Consensus 70 g--~~~~~~~~~~~~~~~~~~ND-~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~---~~~~~~~~~-~~---~pNGi 139 (246)
T PF08450_consen 70 G--KVTVLADLPDGGVPFNRPND-VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD---GKVTVVADG-LG---FPNGI 139 (246)
T ss_dssp T--EEEEEEEEETTCSCTEEEEE-EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT---SEEEEEEEE-ES---SEEEE
T ss_pred C--cEEEEeeccCCCcccCCCce-EEEcCCCCEEEEecCCCccccccccceEEECCC---CeEEEEecC-cc---cccce
Confidence 8 888766531 1 2222222 2233344788853211111111 568888843 344444321 11 11344
Q ss_pred EEEC-CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEE-ecCCEEEEEc
Q 042793 394 SVYG-GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVS-LPGGRILIFG 471 (545)
Q Consensus 394 ~~~~-~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~-~~~~~l~v~G 471 (545)
+.-. ++.||+.--. ...||+|++.....++...... ...+......-.++ -.+++|||..
T Consensus 140 ~~s~dg~~lyv~ds~---------~~~i~~~~~~~~~~~~~~~~~~---------~~~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 140 AFSPDGKTLYVADSF---------NGRIWRFDLDADGGELSNRRVF---------IDFPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp EEETTSSEEEEEETT---------TTEEEEEEEETTTCCEEEEEEE---------EE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred EECCcchheeecccc---------cceeEEEeccccccceeeeeeE---------EEcCCCCcCCCcceEcCCCCEEEEE
Confidence 4444 3367775332 4779999986434334322211 00111111122333 3368899862
Q ss_pred CcCCCCCCCCceEEEcCCCCCCceEEec
Q 042793 472 GSVAGLHSATQLYLLDPTEEKPTWRILN 499 (545)
Q Consensus 472 G~~~~~~~~~~v~~~d~~~~~~~W~~~~ 499 (545)
- ..+.|++||++ ...-..+.
T Consensus 202 ~------~~~~I~~~~p~--G~~~~~i~ 221 (246)
T PF08450_consen 202 W------GGGRIVVFDPD--GKLLREIE 221 (246)
T ss_dssp E------TTTEEEEEETT--SCEEEEEE
T ss_pred c------CCCEEEEECCC--ccEEEEEc
Confidence 2 13679999996 33445553
No 110
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.89 E-value=6.8 Score=38.86 Aligned_cols=149 Identities=17% Similarity=0.194 Sum_probs=75.6
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEE-EcCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSC-VNGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
...+.+.+|.+.. -.+|..|-.++. .-+.+.....|.. +++. -+|...++++|.. .-+|.||+++
T Consensus 224 ~~plllvaG~d~~----lrifqvDGk~N~-~lqS~~l~~fPi~----~a~f~p~G~~~i~~s~rr-----ky~ysyDle~ 289 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT----LRIFQVDGKVNP-KLQSIHLEKFPIQ----KAEFAPNGHSVIFTSGRR-----KYLYSYDLET 289 (514)
T ss_pred CCceEEEecCCCc----EEEEEecCccCh-hheeeeeccCccc----eeeecCCCceEEEecccc-----eEEEEeeccc
Confidence 3468888887642 145555555441 1111111122221 1111 2454467777753 2478999998
Q ss_pred CCCceEeccCCCCCCCCccceE-EEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEEC
Q 042793 319 KPPTWREISGLAPPLPRSWHSS-CTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYG 397 (545)
Q Consensus 319 ~~~~W~~~~~~~~~~~r~~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 397 (545)
. +-.++..+.....+..+.. ++.++ .+.++-|.. .-++.+. ..+..|..-- .++......+.. -+
T Consensus 290 a--k~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~------G~I~lLh--akT~eli~s~--KieG~v~~~~fs-Sd 355 (514)
T KOG2055|consen 290 A--KVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNN------GHIHLLH--AKTKELITSF--KIEGVVSDFTFS-SD 355 (514)
T ss_pred c--ccccccCCCCcccchhheeEecCCC-CeEEEcccC------ceEEeeh--hhhhhhhhee--eeccEEeeEEEe-cC
Confidence 8 7777765432222222222 23334 566666642 2355555 4455663211 122222223332 23
Q ss_pred CcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 398 GRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 398 ~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
+..||+.||. .+||++|+.
T Consensus 356 sk~l~~~~~~----------GeV~v~nl~ 374 (514)
T KOG2055|consen 356 SKELLASGGT----------GEVYVWNLR 374 (514)
T ss_pred CcEEEEEcCC----------ceEEEEecC
Confidence 4588888884 789999998
No 111
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=92.20 E-value=10 Score=35.44 Aligned_cols=193 Identities=15% Similarity=0.086 Sum_probs=93.8
Q ss_pred CCEEEEEcCCCCCcccCcEEEEecCCC---CCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEec
Q 042793 293 GSHLVVFGGCGRQGLLNDVFVLDLDAK---PPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDL 369 (545)
Q Consensus 293 ~~~iyv~GG~~~~~~~~~~~~yd~~t~---~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~ 369 (545)
++++|++.|.... .++.|..... .......-.+ |.+-.+...++.+| .+|.--. ..+++.+||+
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~L--p~~~~GtG~vVYng-slYY~~~------~s~~IvkydL 96 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKL--PYPWQGTGHVVYNG-SLYYNKY------NSRNIVKYDL 96 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEE--eceeccCCeEEECC-cEEEEec------CCceEEEEEC
Confidence 4588888886543 4444432221 0022222222 44444555566655 5555322 2367999999
Q ss_pred CCCCCc-eEEecCCC----CCCCCCCcEE--EEECCcEEEEEcccCCCCCCccccCcEEEEeCCC--CCCceEEeecCCC
Q 042793 370 SMEKPV-WREIPVTW----TPPSRLGHTL--SVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSE--EEPCWRCVTGSGM 440 (545)
Q Consensus 370 ~~~~~~-W~~~~~~~----~p~~r~~~~~--~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~--~~~~W~~v~~~~~ 440 (545)
.+.... +..++... .|-...+++- ..++++-|+++=....+.. .--+-.+|+.+ -..+|..-
T Consensus 97 ~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g----~ivvskld~~tL~v~~tw~T~----- 167 (250)
T PF02191_consen 97 TTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG----NIVVSKLDPETLSVEQTWNTS----- 167 (250)
T ss_pred cCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC----cEEEEeeCcccCceEEEEEec-----
Confidence 877555 65654321 1111222221 2233335776654443321 12344456552 12346521
Q ss_pred CCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeC--C
Q 042793 441 PGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVG--G 518 (545)
Q Consensus 441 ~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~ 518 (545)
.+.+..+.+-+++ |.||++-..+... ..=.+.||+.+++ =..+.. .++.+-..++++-.+ +
T Consensus 168 ---------~~k~~~~naFmvC--GvLY~~~s~~~~~--~~I~yafDt~t~~--~~~~~i--~f~~~~~~~~~l~YNP~d 230 (250)
T PF02191_consen 168 ---------YPKRSAGNAFMVC--GVLYATDSYDTRD--TEIFYAFDTYTGK--EEDVSI--PFPNPYGNISMLSYNPRD 230 (250)
T ss_pred ---------cCchhhcceeeEe--eEEEEEEECCCCC--cEEEEEEECCCCc--eeceee--eeccccCceEeeeECCCC
Confidence 2445555555554 7899986654222 3446889997432 223321 233333344444443 5
Q ss_pred eeEEEE
Q 042793 519 TRTIVL 524 (545)
Q Consensus 519 ~~l~i~ 524 (545)
.+||++
T Consensus 231 k~LY~w 236 (250)
T PF02191_consen 231 KKLYAW 236 (250)
T ss_pred CeEEEE
Confidence 778875
No 112
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=91.89 E-value=4.3 Score=38.47 Aligned_cols=230 Identities=14% Similarity=0.130 Sum_probs=102.6
Q ss_pred cCCcEEeccCCCCC--CCCCceeeEEE--CCEEEEEc--CCCCCCCccCce-EEEeCCCCCCceEEecc---C-CCCCCc
Q 042793 215 AATWRKLTVGGTVE--PSRCNFSACAV--GNRVVLFG--GEGVNMQPMNDT-FVLDLNSSNPEWQHVHV---S-SPPPGR 283 (545)
Q Consensus 215 ~~~W~~~~~~~~~p--~~r~~~~~~~~--~~~lyv~G--G~~~~~~~~~~~-~~~d~~t~~~~W~~~~~---~-~~~~~r 283 (545)
..+|.........+ ..+....+.+. +++|++|- +.......-..+ +....+ +..+|+.... . .....-
T Consensus 29 G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D-~G~TWs~~~~l~~~~~~~~~~ 107 (275)
T PF13088_consen 29 GKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTD-GGKTWSEPTDLPPGWFGNFSG 107 (275)
T ss_dssp TTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESS-TTSS-EEEEEEHHHCCCSCEE
T ss_pred CCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECC-CCCCCCCccccccccccceec
Confidence 45687653311222 22333444443 78888886 221111111121 233333 3459987531 1 011111
Q ss_pred ccee-EEEEcCCEEEEEcCCCC-CcccCcEEEEecCCCCCceEeccCCCCCCCCccceEE-EEcCCEEEEEcCCCCCCCc
Q 042793 284 WGHT-LSCVNGSHLVVFGGCGR-QGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSC-TLDGTKLIVSGGCADSGVL 360 (545)
Q Consensus 284 ~~~~-~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~-~~~~~~iyv~GG~~~~~~~ 360 (545)
.... ...+.++++++.. ... .........|+.+. ..+|+...... ......+.+. ...++.++++--.. ..
T Consensus 108 ~~~~~~i~~~~G~l~~~~-~~~~~~~~~~~~~~S~D~-G~tW~~~~~~~-~~~~~~e~~~~~~~dG~l~~~~R~~-~~-- 181 (275)
T PF13088_consen 108 PGRGPPIQLPDGRLIAPY-YHESGGSFSAFVYYSDDG-GKTWSSGSPIP-DGQGECEPSIVELPDGRLLAVFRTE-GN-- 181 (275)
T ss_dssp CSEEEEEEECTTEEEEEE-EEESSCEEEEEEEEESST-TSSEEEEEECE-CSEEEEEEEEEEETTSEEEEEEEEC-SS--
T ss_pred cceeeeeEecCCCEEEEE-eeccccCcceEEEEeCCC-Cceeecccccc-ccCCcceeEEEECCCCcEEEEEEcc-CC--
Confidence 1111 1233345777761 111 11122333344443 34898766431 1112223332 33455787764321 11
Q ss_pred cCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCC
Q 042793 361 LSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGM 440 (545)
Q Consensus 361 ~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~ 440 (545)
..++...-.....+|+.......|.......++...++.++++....... ..+..+-...+..+|......
T Consensus 182 -~~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r------~~l~l~~S~D~g~tW~~~~~i-- 252 (275)
T PF13088_consen 182 -DDIYISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGR------SNLSLYVSEDGGKTWSRPKTI-- 252 (275)
T ss_dssp -TEEEEEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTS------EEEEEEEECTTCEEEEEEEEE--
T ss_pred -CcEEEEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCC------CceEEEEEeCCCCcCCccEEE--
Confidence 13444444445679998653345666655565666666888777722111 222222222226789876555
Q ss_pred CCCCCCCCCCCCC---CcceEEEEecCCEEEE
Q 042793 441 PGAGNPGGIAPPP---RLDHVAVSLPGGRILI 469 (545)
Q Consensus 441 ~~~~~~~g~~p~~---r~~~~~~~~~~~~l~v 469 (545)
.+.+ -.+.+++...+++|+|
T Consensus 253 ---------~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 253 ---------DDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp ---------EEEE-CCEEEEEEEEEETTEEEE
T ss_pred ---------eCCCCCcEECCeeEEeCCCcCCC
Confidence 1222 2334455555678876
No 113
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=91.86 E-value=9 Score=34.22 Aligned_cols=151 Identities=13% Similarity=0.121 Sum_probs=75.1
Q ss_pred eeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEecc--CCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEE
Q 042793 235 SACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHV--SSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVF 312 (545)
Q Consensus 235 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~--~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 312 (545)
+++...+++|+|-|. .+|+++.......-+.+.. ..+|. ....+.....++++|+|-| +..|
T Consensus 11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg-------~~yw 74 (194)
T cd00094 11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG-------DKYW 74 (194)
T ss_pred eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC-------CEEE
Confidence 344556899999773 6788775421001122211 11222 2222222223268999976 3578
Q ss_pred EEecCCCCCceE---eccCCCCC-CCCccceEEEEc-CCEEEEEcCCCCCCCccCcEEEEecCCCCCceE-----EecC-
Q 042793 313 VLDLDAKPPTWR---EISGLAPP-LPRSWHSSCTLD-GTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWR-----EIPV- 381 (545)
Q Consensus 313 ~yd~~t~~~~W~---~~~~~~~~-~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~-----~~~~- 381 (545)
.||..+. .+. .+.....| .+..-.++.... ++++|+|.|. ..|+||.... +.. .+..
T Consensus 75 ~~~~~~~--~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~--------~y~ry~~~~~--~v~~~yP~~i~~~ 142 (194)
T cd00094 75 VYTGKNL--EPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD--------KYWRYDEKTQ--KMDPGYPKLIETD 142 (194)
T ss_pred EEcCccc--ccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC--------EEEEEeCCCc--cccCCCCcchhhc
Confidence 8876542 221 12111111 112223344443 5699999873 4688885322 211 1111
Q ss_pred -CCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 382 -TWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 382 -~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.++|.. . .++....++++|+|-| +..|+||..
T Consensus 143 w~g~p~~-i-daa~~~~~~~~yfF~g-----------~~y~~~d~~ 175 (194)
T cd00094 143 FPGVPDK-V-DAAFRWLDGYYYFFKG-----------DQYWRFDPR 175 (194)
T ss_pred CCCcCCC-c-ceeEEeCCCcEEEEEC-----------CEEEEEeCc
Confidence 123322 2 2333455348999976 789999987
No 114
>PRK05137 tolB translocation protein TolB; Provisional
Probab=91.67 E-value=18 Score=37.15 Aligned_cols=150 Identities=16% Similarity=0.204 Sum_probs=71.4
Q ss_pred cCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCC
Q 042793 256 MNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPR 335 (545)
Q Consensus 256 ~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r 335 (545)
...+|+.|.... .-+.+..... + .....-.-++++|+...-..+ ...++++|+.+. ..+.+... +..
T Consensus 181 ~~~l~~~d~dg~--~~~~lt~~~~--~-v~~p~wSpDG~~lay~s~~~g---~~~i~~~dl~~g--~~~~l~~~--~g~- 247 (435)
T PRK05137 181 IKRLAIMDQDGA--NVRYLTDGSS--L-VLTPRFSPNRQEITYMSYANG---RPRVYLLDLETG--QRELVGNF--PGM- 247 (435)
T ss_pred ceEEEEECCCCC--CcEEEecCCC--C-eEeeEECCCCCEEEEEEecCC---CCEEEEEECCCC--cEEEeecC--CCc-
Confidence 568999998654 2233321111 1 111111124555544432111 257999999988 77766543 211
Q ss_pred ccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCcc
Q 042793 336 SWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRF 415 (545)
Q Consensus 336 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~ 415 (545)
.......-+|+++++....+ + ..++|.+|+.. .....+.. .+.... .....-+++.|++.... .+
T Consensus 248 ~~~~~~SPDG~~la~~~~~~--g--~~~Iy~~d~~~--~~~~~Lt~--~~~~~~-~~~~spDG~~i~f~s~~--~g---- 312 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQG--G--NTDIYTMDLRS--GTTTRLTD--SPAIDT-SPSYSPDGSQIVFESDR--SG---- 312 (435)
T ss_pred ccCcEECCCCCEEEEEEecC--C--CceEEEEECCC--CceEEccC--CCCccC-ceeEcCCCCEEEEEECC--CC----
Confidence 11122233565665543321 1 25689999653 35555543 111111 11112234345433211 11
Q ss_pred ccCcEEEEeCCCCCCceEEee
Q 042793 416 RSSDVFTMDLSEEEPCWRCVT 436 (545)
Q Consensus 416 ~~~~i~~~d~~~~~~~W~~v~ 436 (545)
..++|.+|.. +.+.+.+.
T Consensus 313 -~~~Iy~~d~~--g~~~~~lt 330 (435)
T PRK05137 313 -SPQLYVMNAD--GSNPRRIS 330 (435)
T ss_pred -CCeEEEEECC--CCCeEEee
Confidence 3579999987 55566654
No 115
>PF12860 PAS_7: PAS fold
Probab=91.12 E-value=0.73 Score=37.11 Aligned_cols=53 Identities=17% Similarity=-0.003 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeeeecccC
Q 042793 32 SVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEANVDL 93 (545)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite~~~~ 93 (545)
..++..............++ ...||. |+.++..|+- +| ++|.+..|||++++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~--~~~dgr--~l~~~~~~~~--~G---g~v~~~~DVT~~~~~ 113 (115)
T PF12860_consen 61 AWVRQRLARLRRRQPRSFEL--RLPDGR--WLEVRAQPLP--DG---GFVLTFTDVTERRRA 113 (115)
T ss_pred HHHHHHHHHHhcCCCceeEE--ECCCCE--EEEEEeEECC--CC---CEEEEEEeCCHHHHh
Confidence 34444444444444444443 467887 7788888884 45 467999999999954
No 116
>KOG1229 consensus 3'5'-cyclic nucleotide phosphodiesterases [Signal transduction mechanisms]
Probab=90.75 E-value=0.18 Score=48.91 Aligned_cols=71 Identities=23% Similarity=0.362 Sum_probs=57.4
Q ss_pred cccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEE
Q 042793 5 GAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGI 83 (545)
Q Consensus 5 ~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~ 83 (545)
+|+||++...+...+ ..+.+.+..|..++..|..|+++...+||.|...--.+.++|+.+..|.+.+|+..
T Consensus 195 gEliGke~adlpkkd--------knradlldtintcikkgke~qG~~~aRRksgdS~dqh~~itP~~gqggkirhfvsl 265 (775)
T KOG1229|consen 195 GELIGKEEADLPKKD--------KNRADLLDTINTCIKKGKEAQGEEEARRKSGDSCDQHFIITPFAGQGGKIRHFVSL 265 (775)
T ss_pred hhhcCCchhhccccc--------cchhhhhhhhhHhhhcCccccchHHHhhccCCcccceEEEeeecCCCCceeeehhh
Confidence 577887765554432 24556788899999999999999999999999887778899999999999998754
No 117
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=90.26 E-value=0.55 Score=46.41 Aligned_cols=76 Identities=13% Similarity=0.066 Sum_probs=48.8
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
++.++++|+++..+... .....+.+...+..+..+..+.....+||+.+|+.++..|+. ++ +++
T Consensus 42 ~~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~---~~~ 105 (348)
T PRK11073 42 QSSRKLFGTPLPELLSY-----------FSLNIELMRESLQAGQGFTDNEVTLVIDGRSHILSLTAQRLP--EG---MIL 105 (348)
T ss_pred CCHHHHcCCCHHHHcCc-----------chhhHHHHHHHHHcCCcccccceEEEECCceEEEEEEEEEcc--Cc---eeE
Confidence 34456666665544421 122234455666666655554455678999999999999998 22 356
Q ss_pred EEeeeeeecccC
Q 042793 82 GIQFFTEANVDL 93 (545)
Q Consensus 82 ~~~~Dite~~~~ 93 (545)
..++|+|++++.
T Consensus 106 ~~~~dit~~~~~ 117 (348)
T PRK11073 106 LEMAPMDNQRRL 117 (348)
T ss_pred EEEechhHHHHH
Confidence 778999988754
No 118
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=90.21 E-value=19 Score=35.11 Aligned_cols=111 Identities=17% Similarity=-0.014 Sum_probs=50.5
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++.||+.+.. .+.+..|++... ..++.+.....+. ...+.+..-+++.+|+..- . .+.+.+||++++
T Consensus 46 ~~~lyv~~~~------~~~i~~~~~~~~-g~l~~~~~~~~~~-~p~~i~~~~~g~~l~v~~~-~----~~~v~v~~~~~~ 112 (330)
T PRK11028 46 KRHLYVGVRP------EFRVLSYRIADD-GALTFAAESPLPG-SPTHISTDHQGRFLFSASY-N----ANCVSVSPLDKD 112 (330)
T ss_pred CCEEEEEECC------CCcEEEEEECCC-CceEEeeeecCCC-CceEEEECCCCCEEEEEEc-C----CCeEEEEEECCC
Confidence 4457775431 136777777521 2565443212211 1112222224556777642 1 256788888654
Q ss_pred CCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCC
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSM 371 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 371 (545)
......+... +.....|.++.. +++.+|+..-. .+.+.+||+++
T Consensus 113 g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~------~~~v~v~d~~~ 157 (330)
T PRK11028 113 GIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLK------EDRIRLFTLSD 157 (330)
T ss_pred CCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCC------CCEEEEEEECC
Confidence 2112222211 111222343332 45566665421 24588898754
No 119
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=89.98 E-value=14 Score=33.04 Aligned_cols=152 Identities=20% Similarity=0.198 Sum_probs=73.4
Q ss_pred CEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcC-CEEEEEcCCCCCCCccCcEEEEecCCC
Q 042793 294 SHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDG-TKLIVSGGCADSGVLLSDTFLLDLSME 372 (545)
Q Consensus 294 ~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~~~ 372 (545)
+++|+|-| +.+|.++.......-..|...-+..+..-.++..... +++|+|-|. ..|+|+...
T Consensus 17 g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg~--------~yw~~~~~~- 80 (194)
T cd00094 17 GELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKGD--------KYWVYTGKN- 80 (194)
T ss_pred CEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECCC--------EEEEEcCcc-
Confidence 58999977 3567776542200112222211112222334444432 689999763 467887431
Q ss_pred CCce---EEecCCCCCC--CCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCC-
Q 042793 373 KPVW---REIPVTWTPP--SRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNP- 446 (545)
Q Consensus 373 ~~~W---~~~~~~~~p~--~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~- 446 (545)
..+ ..+..-+.|+ .....+.....++++|+|-| +..|+||.. ..+... +.|.....
T Consensus 81 -~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-----------~~y~ry~~~--~~~v~~----~yP~~i~~~ 142 (194)
T cd00094 81 -LEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-----------DKYWRYDEK--TQKMDP----GYPKLIETD 142 (194)
T ss_pred -cccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-----------CEEEEEeCC--CccccC----CCCcchhhc
Confidence 111 1111101222 22333332222459999977 678889865 322210 00100000
Q ss_pred CCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 447 GGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 447 ~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
-...| ..-.+++...++++|+|-| +..|.||..
T Consensus 143 w~g~p--~~idaa~~~~~~~~yfF~g--------~~y~~~d~~ 175 (194)
T cd00094 143 FPGVP--DKVDAAFRWLDGYYYFFKG--------DQYWRFDPR 175 (194)
T ss_pred CCCcC--CCcceeEEeCCCcEEEEEC--------CEEEEEeCc
Confidence 00122 2223455554589999977 568999986
No 120
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.62 E-value=25 Score=35.44 Aligned_cols=137 Identities=12% Similarity=0.184 Sum_probs=65.9
Q ss_pred ccCCcEEeccCCCCCCCCCceeeEEE---CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCC--CCCccceeE
Q 042793 214 EAATWRKLTVGGTVEPSRCNFSACAV---GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSP--PPGRWGHTL 288 (545)
Q Consensus 214 ~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~--~~~r~~~~~ 288 (545)
....|+.+..+-. +...-..+... .+.-+++|-.. .++-......+|........ ....+.+..
T Consensus 73 ~G~~W~q~~~p~~--~~~~L~~V~F~~~d~~~GwAVG~~G---------~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~ 141 (398)
T PLN00033 73 QSSEWEQVDLPID--PGVVLLDIAFVPDDPTHGFLLGTRQ---------TLLETKDGGKTWVPRSIPSAEDEDFNYRFNS 141 (398)
T ss_pred CCCccEEeecCCC--CCCceEEEEeccCCCCEEEEEcCCC---------EEEEEcCCCCCceECccCcccccccccceee
Confidence 3457887754111 11122333331 34788888531 23433334558997532111 111122222
Q ss_pred EEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEe
Q 042793 289 SCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLD 368 (545)
Q Consensus 289 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d 368 (545)
..+.++..|++|-. -.+|-......+|+.++... ..+-.......+.++..++.|.. ..+++-+
T Consensus 142 v~f~~~~g~~vG~~--------G~il~T~DgG~tW~~~~~~~-~~p~~~~~i~~~~~~~~~ivg~~-------G~v~~S~ 205 (398)
T PLN00033 142 ISFKGKEGWIIGKP--------AILLHTSDGGETWERIPLSP-KLPGEPVLIKATGPKSAEMVTDE-------GAIYVTS 205 (398)
T ss_pred eEEECCEEEEEcCc--------eEEEEEcCCCCCceECcccc-CCCCCceEEEEECCCceEEEecc-------ceEEEEC
Confidence 33445678888632 14444444445999886421 11112223334444567777743 1244443
Q ss_pred cCCCCCceEEe
Q 042793 369 LSMEKPVWREI 379 (545)
Q Consensus 369 ~~~~~~~W~~~ 379 (545)
....+|+.+
T Consensus 206 --D~G~tW~~~ 214 (398)
T PLN00033 206 --NAGRNWKAA 214 (398)
T ss_pred --CCCCCceEc
Confidence 456689886
No 121
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=89.16 E-value=0.33 Score=47.45 Aligned_cols=38 Identities=13% Similarity=-0.035 Sum_probs=30.8
Q ss_pred EEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeeeecccC
Q 042793 51 LLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEANVDL 93 (545)
Q Consensus 51 ~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite~~~~ 93 (545)
+....++|..+|+.+.+.|+.+++ ++++.+|||++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~dit~~~~~ 110 (333)
T TIGR02966 73 LELPSPINSERVLEIRIAPYGEEQ-----KLLVARDVTRLRRL 110 (333)
T ss_pred eEeecCCCCceEEEEEEEEcCCCc-----eEEEEeCchHHHHH
Confidence 445568999999999999998753 67889999988743
No 122
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.52 E-value=27 Score=34.47 Aligned_cols=223 Identities=13% Similarity=0.104 Sum_probs=99.9
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++.||+..... .....+..|.+.....+.+.+.........-.|.+..-+++.||+.- +. ...+.+|++..+
T Consensus 48 ~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van-y~----~g~v~v~~l~~~ 119 (345)
T PF10282_consen 48 GRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN-YG----GGSVSVFPLDDD 119 (345)
T ss_dssp SSEEEEEETTS---STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE-TT----TTEEEEEEECTT
T ss_pred CCEEEEEEccc---cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE-cc----CCeEEEEEccCC
Confidence 56788886532 12235666665543226666542111111112322222556677752 11 245778877764
Q ss_pred CCceEecc-------CCCC---CCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCC
Q 042793 320 PPTWREIS-------GLAP---PLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSR 388 (545)
Q Consensus 320 ~~~W~~~~-------~~~~---~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 388 (545)
. +-.... ..+. ...-..|.+... +++.+|+..- -.+.+++|+++..+.+......-..|.+-
T Consensus 120 g-~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 120 G-SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL------GADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp S-EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET------TTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred c-ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec------CCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 1 111110 0100 122233544443 4556777531 12568999987665445443211122211
Q ss_pred -CCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEec-CC-
Q 042793 389 -LGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLP-GG- 465 (545)
Q Consensus 389 -~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~-~~- 465 (545)
-.|.+..-+++.+|++... .+.|..|+.......++.+.....- ...+......+.+.+. ++
T Consensus 193 GPRh~~f~pdg~~~Yv~~e~---------s~~v~v~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~i~ispdg~ 257 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNEL---------SNTVSVFDYDPSDGSLTEIQTISTL------PEGFTGENAPAEIAISPDGR 257 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETT---------TTEEEEEEEETTTTEEEEEEEEESC------ETTSCSSSSEEEEEE-TTSS
T ss_pred CCcEEEEcCCcCEEEEecCC---------CCcEEEEeecccCCceeEEEEeeec------cccccccCCceeEEEecCCC
Confidence 1132222245589998765 3556665554224456555443100 0001111123344443 34
Q ss_pred EEEEEcCcCCCCCCCCceEEEcCCCCCCceEEe
Q 042793 466 RILIFGGSVAGLHSATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 466 ~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~ 498 (545)
.|||.-.. .+.|.+|+++..+.+-+.+
T Consensus 258 ~lyvsnr~------~~sI~vf~~d~~~g~l~~~ 284 (345)
T PF10282_consen 258 FLYVSNRG------SNSISVFDLDPATGTLTLV 284 (345)
T ss_dssp EEEEEECT------TTEEEEEEECTTTTTEEEE
T ss_pred EEEEEecc------CCEEEEEEEecCCCceEEE
Confidence 56775332 4778888884334455544
No 123
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.46 E-value=28 Score=34.67 Aligned_cols=218 Identities=15% Similarity=0.198 Sum_probs=111.0
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
+++||+-.... .+++||..+....|+.-.. . . ++..-. +++.+..+|+.- ..+.++++|..+.
T Consensus 111 ~G~i~~g~~~g-------~~y~ld~~~G~~~W~~~~~-~-~-~~~~~~-~v~~~~~v~~~s------~~g~~~al~~~tG 173 (370)
T COG1520 111 DGKIYVGSWDG-------KLYALDASTGTLVWSRNVG-G-S-PYYASP-PVVGDGTVYVGT------DDGHLYALNADTG 173 (370)
T ss_pred CCeEEEecccc-------eEEEEECCCCcEEEEEecC-C-C-eEEecC-cEEcCcEEEEec------CCCeEEEEEccCC
Confidence 67766544321 7999999777778986432 2 1 333323 334344555542 1256899999988
Q ss_pred CCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCc-EEEEECC
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGH-TLSVYGG 398 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~-~~~~~~~ 398 (545)
...|+.-.+.. ...+...... ...+.+|+-.. + ....++.+|+...+..|+.-.. .+..+..- ....+..
T Consensus 174 ~~~W~~~~~~~-~~~~~~~~~~-~~~~~vy~~~~-~----~~~~~~a~~~~~G~~~w~~~~~--~~~~~~~~~~~~~~~~ 244 (370)
T COG1520 174 TLKWTYETPAP-LSLSIYGSPA-IASGTVYVGSD-G----YDGILYALNAEDGTLKWSQKVS--QTIGRTAISTTPAVDG 244 (370)
T ss_pred cEEEEEecCCc-cccccccCce-eecceEEEecC-C----CcceEEEEEccCCcEeeeeeee--cccCcccccccccccC
Confidence 88898433211 1112211222 33446666422 1 1225899998888889985321 11111100 1112223
Q ss_pred cEEEEEccc-CCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCC
Q 042793 399 RKILMFGGL-AKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGL 477 (545)
Q Consensus 399 ~~lyi~GG~-~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~ 477 (545)
..+|+-|+. .... ..+++.+|..+.+..|+.-... .....+...+.....++++|+........
T Consensus 245 ~~v~v~~~~~~~~~-----~g~~~~l~~~~G~~~W~~~~~~----------~~~~~~~~~~~~~~~dG~v~~~~~~~~~~ 309 (370)
T COG1520 245 GPVYVDGGVYAGSY-----GGKLLCLDADTGELIWSFPAGG----------SVQGSGLYTTPVAGADGKVYIGFTDNDGR 309 (370)
T ss_pred ceEEECCcEEEEec-----CCeEEEEEcCCCceEEEEeccc----------EeccCCeeEEeecCCCccEEEEEeccccc
Confidence 355555552 1111 3558888888767789866421 00111112222222377888765432211
Q ss_pred CCCCceEEEcCCCCCC--ceEEec
Q 042793 478 HSATQLYLLDPTEEKP--TWRILN 499 (545)
Q Consensus 478 ~~~~~v~~~d~~~~~~--~W~~~~ 499 (545)
....+++++...... .|....
T Consensus 310 -~~~~~~~~~~~~g~~~~~w~~~~ 332 (370)
T COG1520 310 -GSGSLYALADVPGGTLLKWSYPV 332 (370)
T ss_pred -cccceEEEeccCCCeeEEEEEeC
Confidence 346678887632233 566653
No 124
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=87.85 E-value=39 Score=35.55 Aligned_cols=47 Identities=34% Similarity=0.731 Sum_probs=40.0
Q ss_pred cccchhhHHHHHhhccCChhhhhhHHHhhHHHHHhcCChhhHHHHhhh
Q 042793 135 IFQLSDEVISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWRMVCQN 182 (545)
Q Consensus 135 ~~~lp~~~~~~~~~~~l~~~~~~~~~~vcr~~~~l~~s~~~~~~~~~~ 182 (545)
+..||.|+. ..|+.+|+++++..+..||+.|+.++.....|...|..
T Consensus 108 i~~lp~el~-~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~ 154 (537)
T KOG0274|consen 108 LSLLPSELS-LHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRE 154 (537)
T ss_pred hhcccchhc-ccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhh
Confidence 556799997 58999999999999999999999999988776655443
No 125
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.43 E-value=31 Score=34.99 Aligned_cols=237 Identities=14% Similarity=0.154 Sum_probs=112.3
Q ss_pred ceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCc------ccCcEEEEecCCCCCceE--eccCC
Q 042793 258 DTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQG------LLNDVFVLDLDAKPPTWR--EISGL 329 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~------~~~~~~~yd~~t~~~~W~--~~~~~ 329 (545)
.++++|+.++ +.. . ..++.+... .++-..+++.+++...+... ....++...+.+. .-+ .+-..
T Consensus 151 ~l~v~Dl~tg--~~l--~-d~i~~~~~~-~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~--~~~d~lvfe~ 222 (414)
T PF02897_consen 151 TLRVFDLETG--KFL--P-DGIENPKFS-SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP--QSEDELVFEE 222 (414)
T ss_dssp EEEEEETTTT--EEE--E-EEEEEEESE-EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS---GGG-EEEEC-
T ss_pred EEEEEECCCC--cCc--C-Ccccccccc-eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCC--hHhCeeEEee
Confidence 6889999887 332 1 112222222 13333443555555544332 2667888888877 333 22222
Q ss_pred CCCCCCc-c-ceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCC---CCceEEecCCCCCCCCCCcEEEEECCcEEEEE
Q 042793 330 APPLPRS-W-HSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSME---KPVWREIPVTWTPPSRLGHTLSVYGGRKILMF 404 (545)
Q Consensus 330 ~~~~~r~-~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~---~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~ 404 (545)
+.+.. . .....-++..++|.-... .. .++++.+++... ...|..+.. +..-..+.+...++ .+|+.
T Consensus 223 --~~~~~~~~~~~~s~d~~~l~i~~~~~--~~-~s~v~~~d~~~~~~~~~~~~~l~~---~~~~~~~~v~~~~~-~~yi~ 293 (414)
T PF02897_consen 223 --PDEPFWFVSVSRSKDGRYLFISSSSG--TS-ESEVYLLDLDDGGSPDAKPKLLSP---REDGVEYYVDHHGD-RLYIL 293 (414)
T ss_dssp --TTCTTSEEEEEE-TTSSEEEEEEESS--SS-EEEEEEEECCCTTTSS-SEEEEEE---SSSS-EEEEEEETT-EEEEE
T ss_pred --cCCCcEEEEEEecCcccEEEEEEEcc--cc-CCeEEEEeccccCCCcCCcEEEeC---CCCceEEEEEccCC-EEEEe
Confidence 22222 1 222222444444433321 11 367999997543 457888753 11112222323344 89887
Q ss_pred cccCCCCCCccccCcEEEEeCCCCCC-ceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCce
Q 042793 405 GGLAKSGPLRFRSSDVFTMDLSEEEP-CWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQL 483 (545)
Q Consensus 405 GG~~~~~~~~~~~~~i~~~d~~~~~~-~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v 483 (545)
-.... ....+..+++..... .|..+-.. +.....-..+...++.|++.-=.+ ....+
T Consensus 294 Tn~~a------~~~~l~~~~l~~~~~~~~~~~l~~------------~~~~~~l~~~~~~~~~Lvl~~~~~----~~~~l 351 (414)
T PF02897_consen 294 TNDDA------PNGRLVAVDLADPSPAEWWTVLIP------------EDEDVSLEDVSLFKDYLVLSYREN----GSSRL 351 (414)
T ss_dssp E-TT-------TT-EEEEEETTSTSGGGEEEEEE--------------SSSEEEEEEEEETTEEEEEEEET----TEEEE
T ss_pred eCCCC------CCcEEEEecccccccccceeEEcC------------CCCceeEEEEEEECCEEEEEEEEC----CccEE
Confidence 65222 146788888874221 36643211 223223334444578887763322 35679
Q ss_pred EEEcCCCCCCceEEeccCCCCCCCCCCceeEEe---CCee-EEEEcCCCCcccccccceeeeecc
Q 042793 484 YLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVV---GGTR-TIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 484 ~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~~-l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
.++|+. ..|..... .+|. .+....+. ..+. .|.+.+... ...+|.||+++
T Consensus 352 ~v~~~~---~~~~~~~~--~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~----P~~~y~~d~~t 405 (414)
T PF02897_consen 352 RVYDLD---DGKESREI--PLPE--AGSVSGVSGDFDSDELRFSYSSFTT----PPTVYRYDLAT 405 (414)
T ss_dssp EEEETT----TEEEEEE--ESSS--SSEEEEEES-TT-SEEEEEEEETTE----EEEEEEEETTT
T ss_pred EEEECC---CCcEEeee--cCCc--ceEEeccCCCCCCCEEEEEEeCCCC----CCEEEEEECCC
Confidence 999984 23444422 1222 22111121 1233 444555553 36689999876
No 126
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=87.38 E-value=26 Score=33.05 Aligned_cols=232 Identities=17% Similarity=0.242 Sum_probs=103.0
Q ss_pred CCCceEEecc-CCCC--CCccceeEEEE-cCCEEEEEc--CCCCCc-ccCcE-EEEecCCCCCceEeccCCCC----CCC
Q 042793 267 SNPEWQHVHV-SSPP--PGRWGHTLSCV-NGSHLVVFG--GCGRQG-LLNDV-FVLDLDAKPPTWREISGLAP----PLP 334 (545)
Q Consensus 267 ~~~~W~~~~~-~~~~--~~r~~~~~~~~-~~~~iyv~G--G~~~~~-~~~~~-~~yd~~t~~~~W~~~~~~~~----~~~ 334 (545)
...+|..... ...+ ..+....+.+. .+++|+++- +..... ....+ +....+ +..+|+....... ...
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D-~G~TWs~~~~l~~~~~~~~~ 106 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTD-GGKTWSEPTDLPPGWFGNFS 106 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESS-TTSS-EEEEEEHHHCCCSCE
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECC-CCCCCCCcccccccccccee
Confidence 3458986432 1222 23333333333 355788775 222111 11111 234333 3459996643210 011
Q ss_pred Cccce-EEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCc-EEEEECCcEEEEEcccCCCCC
Q 042793 335 RSWHS-SCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGH-TLSVYGGRKILMFGGLAKSGP 412 (545)
Q Consensus 335 r~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~-~~~~~~~~~lyi~GG~~~~~~ 412 (545)
...+. .....++.+++.. .............+. +....+|+...... ....... +++...++.|+++-... ..
T Consensus 107 ~~~~~~~i~~~~G~l~~~~-~~~~~~~~~~~~~~S-~D~G~tW~~~~~~~-~~~~~~e~~~~~~~dG~l~~~~R~~-~~- 181 (275)
T PF13088_consen 107 GPGRGPPIQLPDGRLIAPY-YHESGGSFSAFVYYS-DDGGKTWSSGSPIP-DGQGECEPSIVELPDGRLLAVFRTE-GN- 181 (275)
T ss_dssp ECSEEEEEEECTTEEEEEE-EEESSCEEEEEEEEE-SSTTSSEEEEEECE-CSEEEEEEEEEEETTSEEEEEEEEC-SS-
T ss_pred ccceeeeeEecCCCEEEEE-eeccccCcceEEEEe-CCCCceeecccccc-ccCCcceeEEEECCCCcEEEEEEcc-CC-
Confidence 11111 1233355777751 111111122233344 24566898876411 1112222 33334566888876542 11
Q ss_pred CccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEE-EcCCCC
Q 042793 413 LRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYL-LDPTEE 491 (545)
Q Consensus 413 ~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~-~d~~~~ 491 (545)
..++.........+|+..... ..|.+......+...+++++++...... ...+.+ +..+ +
T Consensus 182 -----~~~~~~~S~D~G~TWs~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~---r~~l~l~~S~D-~ 242 (275)
T PF13088_consen 182 -----DDIYISRSTDGGRTWSPPQPT----------NLPNPNSSISLVRLSDGRLLLVYNNPDG---RSNLSLYVSED-G 242 (275)
T ss_dssp -----TEEEEEEESSTTSS-EEEEEE----------ECSSCCEEEEEEECTTSEEEEEEECSST---SEEEEEEEECT-T
T ss_pred -----CcEEEEEECCCCCcCCCceec----------ccCcccCCceEEEcCCCCEEEEEECCCC---CCceEEEEEeC-C
Confidence 244444444446789987633 1355555455555557788877662111 122222 2333 3
Q ss_pred CCceEEeccCCCCCCCCCCcee-EEeCCeeEEE
Q 042793 492 KPTWRILNVPGRPPRFAWGHST-CVVGGTRTIV 523 (545)
Q Consensus 492 ~~~W~~~~~~~~~p~~r~~~~~-~~~~~~~l~i 523 (545)
..+|.........+....+++. +...+++|+|
T Consensus 243 g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 243 GKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred CCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 6789876443222322333444 3444678876
No 127
>PRK04922 tolB translocation protein TolB; Provisional
Probab=86.57 E-value=41 Score=34.43 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=71.4
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCC
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSR 388 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 388 (545)
..++++|+.++ +-..+... +. ........-+|+++++....+ + ..+++++|+... ....+... .. .
T Consensus 228 ~~l~~~dl~~g--~~~~l~~~--~g-~~~~~~~SpDG~~l~~~~s~~--g--~~~Iy~~d~~~g--~~~~lt~~--~~-~ 293 (433)
T PRK04922 228 SAIYVQDLATG--QRELVASF--RG-INGAPSFSPDGRRLALTLSRD--G--NPEIYVMDLGSR--QLTRLTNH--FG-I 293 (433)
T ss_pred cEEEEEECCCC--CEEEeccC--CC-CccCceECCCCCEEEEEEeCC--C--CceEEEEECCCC--CeEECccC--CC-C
Confidence 46899999887 66666543 11 111112233565665543221 1 147999997543 55555431 11 1
Q ss_pred CCcEEEEE-CCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCE-
Q 042793 389 LGHTLSVY-GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGR- 466 (545)
Q Consensus 389 ~~~~~~~~-~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~- 466 (545)
....... ++..|++..... + ..++|.+|.. +.+.+.+... + ..........+++
T Consensus 294 -~~~~~~spDG~~l~f~sd~~--g-----~~~iy~~dl~--~g~~~~lt~~---------g-----~~~~~~~~SpDG~~ 349 (433)
T PRK04922 294 -DTEPTWAPDGKSIYFTSDRG--G-----RPQIYRVAAS--GGSAERLTFQ---------G-----NYNARASVSPDGKK 349 (433)
T ss_pred -ccceEECCCCCEEEEEECCC--C-----CceEEEEECC--CCCeEEeecC---------C-----CCccCEEECCCCCE
Confidence 1112223 332444432221 1 2579999987 6667766432 1 1111122223444
Q ss_pred EEEEcCcCCCCCCCCceEEEcCCCCCCceEEec
Q 042793 467 ILIFGGSVAGLHSATQLYLLDPTEEKPTWRILN 499 (545)
Q Consensus 467 l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~ 499 (545)
|++..+.+ + ...++.+|+. +...+.+.
T Consensus 350 Ia~~~~~~-~---~~~I~v~d~~--~g~~~~Lt 376 (433)
T PRK04922 350 IAMVHGSG-G---QYRIAVMDLS--TGSVRTLT 376 (433)
T ss_pred EEEEECCC-C---ceeEEEEECC--CCCeEECC
Confidence 44443321 1 2379999986 44566553
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=86.30 E-value=30 Score=32.67 Aligned_cols=141 Identities=18% Similarity=0.190 Sum_probs=67.9
Q ss_pred EEEEEcCCCCCCCccCceEEEeCCCCCCceE-EeccCCCCCCccceeEEE-EcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 242 RVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQ-HVHVSSPPPGRWGHTLSC-VNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 242 ~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~~~~r~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
.+|+.++.+ ..+.++|+.+. +-. .+. ....++ .++. -+++.+|+.++.+ +.+.+||+.+.
T Consensus 2 ~~~~s~~~d------~~v~~~d~~t~--~~~~~~~--~~~~~~---~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~ 63 (300)
T TIGR03866 2 KAYVSNEKD------NTISVIDTATL--EVTRTFP--VGQRPR---GITLSKDGKLLYVCASDS-----DTIQVIDLATG 63 (300)
T ss_pred cEEEEecCC------CEEEEEECCCC--ceEEEEE--CCCCCC---ceEECCCCCEEEEEECCC-----CeEEEEECCCC
Confidence 466666543 27888998776 322 222 111122 2222 2444677776532 45889999887
Q ss_pred CCceEe-ccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECC
Q 042793 320 PPTWRE-ISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGG 398 (545)
Q Consensus 320 ~~~W~~-~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 398 (545)
+... ++.. ..+. ..+..-+++.+|+.++.+ +.+.++|+.+.. ....+.. .....+++...+
T Consensus 64 --~~~~~~~~~--~~~~--~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~-~~~~~~~-----~~~~~~~~~~~d 125 (300)
T TIGR03866 64 --EVIGTLPSG--PDPE--LFALHPNGKILYIANEDD------NLVTVIDIETRK-VLAEIPV-----GVEPEGMAVSPD 125 (300)
T ss_pred --cEEEeccCC--CCcc--EEEECCCCCEEEEEcCCC------CeEEEEECCCCe-EEeEeeC-----CCCcceEEECCC
Confidence 4432 2221 1121 112222455677765421 358889965321 1222221 111233444444
Q ss_pred cEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 399 RKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 399 ~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
+.+++++... .+.++.+|..
T Consensus 126 g~~l~~~~~~--------~~~~~~~d~~ 145 (300)
T TIGR03866 126 GKIVVNTSET--------TNMAHFIDTK 145 (300)
T ss_pred CCEEEEEecC--------CCeEEEEeCC
Confidence 4666665432 1345667876
No 129
>PRK04043 tolB translocation protein TolB; Provisional
Probab=86.28 E-value=41 Score=34.22 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=78.4
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCC
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSR 388 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 388 (545)
.++|++|+.+. .=+.+... + .........-+|+++.+.-... + ..++|.+|+. +..++.+.. .+.
T Consensus 213 ~~Iyv~dl~tg--~~~~lt~~--~-g~~~~~~~SPDG~~la~~~~~~--g--~~~Iy~~dl~--~g~~~~LT~--~~~-- 277 (419)
T PRK04043 213 PTLYKYNLYTG--KKEKIASS--Q-GMLVVSDVSKDGSKLLLTMAPK--G--QPDIYLYDTN--TKTLTQITN--YPG-- 277 (419)
T ss_pred CEEEEEECCCC--cEEEEecC--C-CcEEeeEECCCCCEEEEEEccC--C--CcEEEEEECC--CCcEEEccc--CCC--
Confidence 38999999887 55555432 1 1111122233565666543321 1 2579999965 447887764 221
Q ss_pred CCcEEEE-ECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEE
Q 042793 389 LGHTLSV-YGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRI 467 (545)
Q Consensus 389 ~~~~~~~-~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l 467 (545)
....... -++++|++.-... + ..+||.+|+. +.+.+++...+ . . ...+. .+++.
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~--g-----~~~Iy~~dl~--~g~~~rlt~~g---------~-----~-~~~~S-PDG~~ 332 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRL--G-----YPNIFMKKLN--SGSVEQVVFHG---------K-----N-NSSVS-TYKNY 332 (419)
T ss_pred ccCccEECCCCCEEEEEECCC--C-----CceEEEEECC--CCCeEeCccCC---------C-----c-CceEC-CCCCE
Confidence 1111122 2344677654331 1 3689999998 66676664321 1 1 12222 34543
Q ss_pred EEEcCcCC-CCC--CCCceEEEcCCCCCCceEEecc
Q 042793 468 LIFGGSVA-GLH--SATQLYLLDPTEEKPTWRILNV 500 (545)
Q Consensus 468 ~v~GG~~~-~~~--~~~~v~~~d~~~~~~~W~~~~~ 500 (545)
+++-.... ... ...+++.+|++ +..++.+..
T Consensus 333 Ia~~~~~~~~~~~~~~~~I~v~d~~--~g~~~~LT~ 366 (419)
T PRK04043 333 IVYSSRETNNEFGKNTFNLYLISTN--SDYIRRLTA 366 (419)
T ss_pred EEEEEcCCCcccCCCCcEEEEEECC--CCCeEECCC
Confidence 33333221 111 13589999996 567777754
No 130
>PF07310 PAS_5: PAS domain; InterPro: IPR009922 This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long.
Probab=86.20 E-value=2.1 Score=35.75 Aligned_cols=56 Identities=20% Similarity=0.187 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEe
Q 042793 29 VDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQ 84 (545)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~ 84 (545)
......+.+...+....+..........+|....++..+-|+.+++|.+..++|..
T Consensus 81 ~~~~~~~~~~~v~~~~~p~~~~~~~~~~~g~~~~~e~l~LPL~~~~~~v~rilG~~ 136 (137)
T PF07310_consen 81 DRERVRRAYRAVVERPAPVRARGRAEDADGRYLEYERLLLPLRSDGGTVDRILGAL 136 (137)
T ss_pred hHHHHHHHHHHHHcCCceEEEEEEEecCCCCeeEEEEEEcccCCCCCCccEEEEec
Confidence 45556677777888888888888888899999888889999999999999988874
No 131
>PRK00178 tolB translocation protein TolB; Provisional
Probab=85.28 E-value=47 Score=33.91 Aligned_cols=162 Identities=17% Similarity=0.224 Sum_probs=78.7
Q ss_pred cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCC
Q 042793 292 NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSM 371 (545)
Q Consensus 292 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 371 (545)
++++|+... ... ....++++|+.+. +-+.+... + .........-+|+++++..... + ..++|++|+.+
T Consensus 209 DG~~la~~s-~~~--~~~~l~~~~l~~g--~~~~l~~~--~-g~~~~~~~SpDG~~la~~~~~~--g--~~~Iy~~d~~~ 276 (430)
T PRK00178 209 DGKRIAYVS-FEQ--KRPRIFVQNLDTG--RREQITNF--E-GLNGAPAWSPDGSKLAFVLSKD--G--NPEIYVMDLAS 276 (430)
T ss_pred CCCEEEEEE-cCC--CCCEEEEEECCCC--CEEEccCC--C-CCcCCeEECCCCCEEEEEEccC--C--CceEEEEECCC
Confidence 455665443 221 1247999999988 66666543 1 1111111222455665443211 1 14799999664
Q ss_pred CCCceEEecCCCCCCCCCCcEEEEE-CCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCC
Q 042793 372 EKPVWREIPVTWTPPSRLGHTLSVY-GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIA 450 (545)
Q Consensus 372 ~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~ 450 (545)
...+.+... + .. ....... +++.|++.... .+ ...+|.+|+. +.+++.+... +
T Consensus 277 --~~~~~lt~~--~-~~-~~~~~~spDg~~i~f~s~~--~g-----~~~iy~~d~~--~g~~~~lt~~---------~-- 330 (430)
T PRK00178 277 --RQLSRVTNH--P-AI-DTEPFWGKDGRTLYFTSDR--GG-----KPQIYKVNVN--GGRAERVTFV---------G-- 330 (430)
T ss_pred --CCeEEcccC--C-CC-cCCeEECCCCCEEEEEECC--CC-----CceEEEEECC--CCCEEEeecC---------C--
Confidence 466666531 1 11 1112222 34356554321 11 3579999987 6667776432 0
Q ss_pred CCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEec
Q 042793 451 PPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILN 499 (545)
Q Consensus 451 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~ 499 (545)
........ ..+++.+++.....+ ..+++.+|++ +...+.+.
T Consensus 331 --~~~~~~~~-Spdg~~i~~~~~~~~---~~~l~~~dl~--tg~~~~lt 371 (430)
T PRK00178 331 --NYNARPRL-SADGKTLVMVHRQDG---NFHVAAQDLQ--RGSVRILT 371 (430)
T ss_pred --CCccceEE-CCCCCEEEEEEccCC---ceEEEEEECC--CCCEEEcc
Confidence 11111122 224444333332211 2369999996 45566664
No 132
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=84.87 E-value=47 Score=33.60 Aligned_cols=149 Identities=19% Similarity=0.230 Sum_probs=74.0
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCC
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSR 388 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 388 (545)
..++++|+.+. .-..+... +.... .....-+++.+++...... ..++|.+|+.. .....+... +...
T Consensus 214 ~~i~v~d~~~g--~~~~~~~~--~~~~~-~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~--~~~~~l~~~--~~~~ 280 (417)
T TIGR02800 214 PEIYVQDLATG--QREKVASF--PGMNG-APAFSPDGSKLAVSLSKDG----NPDIYVMDLDG--KQLTRLTNG--PGID 280 (417)
T ss_pred cEEEEEECCCC--CEEEeecC--CCCcc-ceEECCCCCEEEEEECCCC----CccEEEEECCC--CCEEECCCC--CCCC
Confidence 57899999887 55555432 11111 1122234556665533211 24689999653 355555431 1111
Q ss_pred CCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEE
Q 042793 389 LGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRIL 468 (545)
Q Consensus 389 ~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~ 468 (545)
... ...-++..|++..... + ...+|.+|+. +.+++.+... ...........+++.+
T Consensus 281 ~~~-~~s~dg~~l~~~s~~~--g-----~~~iy~~d~~--~~~~~~l~~~--------------~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 281 TEP-SWSPDGKSIAFTSDRG--G-----SPQIYMMDAD--GGEVRRLTFR--------------GGYNASPSWSPDGDLI 336 (417)
T ss_pred CCE-EECCCCCEEEEEECCC--C-----CceEEEEECC--CCCEEEeecC--------------CCCccCeEECCCCCEE
Confidence 111 1112343555443221 1 3579999988 6667766432 1111122223356666
Q ss_pred EEcCcCCCCCCCCceEEEcCCCCCCceEEec
Q 042793 469 IFGGSVAGLHSATQLYLLDPTEEKPTWRILN 499 (545)
Q Consensus 469 v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~ 499 (545)
++..... ....++.+|+. +..++.+.
T Consensus 337 ~~~~~~~---~~~~i~~~d~~--~~~~~~l~ 362 (417)
T TIGR02800 337 AFVHREG---GGFNIAVMDLD--GGGERVLT 362 (417)
T ss_pred EEEEccC---CceEEEEEeCC--CCCeEEcc
Confidence 6655332 23579999996 34455553
No 133
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=84.76 E-value=1.3 Score=42.85 Aligned_cols=74 Identities=9% Similarity=0.083 Sum_probs=56.9
Q ss_pred cccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeee
Q 042793 7 ETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFF 86 (545)
Q Consensus 7 ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~D 86 (545)
++||.....+++ -..+.+..+.+.+.+|..=..+++. .+|.. .+.++..+++|++|+..+.+-+.+|
T Consensus 328 viGr~v~~chpP----------ksv~iv~ki~~~fksG~kd~~efw~--~~~~~-~i~i~Y~av~de~ge~~g~le~~qd 394 (409)
T COG2461 328 VIGRRVQLCHPP----------KSVHIVEKILKDFKSGEKDFAEFWI--NMGDK-FIHIRYFAVKDEEGEYLGTLEVVQD 394 (409)
T ss_pred hhCCcccCCCCC----------chHHHHHHHHHHhhcCCcchHHHhc--cCCCc-eEEEEEEEEEcCCCceeeeehhhhh
Confidence 467776655543 5788899999999999877777772 23333 4567889999999999999999999
Q ss_pred eeecccC
Q 042793 87 TEANVDL 93 (545)
Q Consensus 87 ite~~~~ 93 (545)
||+-++.
T Consensus 395 i~~i~~l 401 (409)
T COG2461 395 ITRIKEL 401 (409)
T ss_pred hHHHHhc
Confidence 9987755
No 134
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=84.57 E-value=0.76 Score=45.12 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=31.8
Q ss_pred cccchhhHHHHHhhccCCh-hhhhhHHHhhHHHHHhcCC
Q 042793 135 IFQLSDEVISLKILSWLSP-RDIASVGSVCRRFYELTKN 172 (545)
Q Consensus 135 ~~~lp~~~~~~~~~~~l~~-~~~~~~~~vcr~~~~l~~s 172 (545)
..+||+|++. .|..+|+- .|+...++|||+||+.+..
T Consensus 4 Ws~Lp~dll~-~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLH-MIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHH-HHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 3479999994 79999964 7999999999999999874
No 135
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=84.44 E-value=71 Score=35.31 Aligned_cols=188 Identities=17% Similarity=0.184 Sum_probs=94.9
Q ss_pred eeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccce----eEEE-----------------Ec
Q 042793 234 FSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGH----TLSC-----------------VN 292 (545)
Q Consensus 234 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~----~~~~-----------------~~ 292 (545)
.+-+++++.||+.... +.++.+|..|.+..|+.-....... ...+ .++. +.
T Consensus 188 ~TPlvvgg~lYv~t~~-------~~V~ALDa~TGk~lW~~d~~~~~~~-~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~ 259 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH-------NKVIALDAATGKEKWKFDPKLKTEA-GRQHQTCRGVSYYDAPAAAAGPAAPAAPADC 259 (764)
T ss_pred cCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCccc-ccccccccceEEecCCccccccccccccccc
Confidence 4557789999997542 3799999998888898533111111 0011 0111 12
Q ss_pred CCEEEEEcCCCCCcccCcEEEEecCCCCCceEecc--------CCC-CCCCCc-cceEEEEcCCEEEEEcCCCCCC----
Q 042793 293 GSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREIS--------GLA-PPLPRS-WHSSCTLDGTKLIVSGGCADSG---- 358 (545)
Q Consensus 293 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~--------~~~-~~~~r~-~~~~~~~~~~~iyv~GG~~~~~---- 358 (545)
+++||+ +..+ ..++.+|.+|....|..-. .+. .+...+ ..++-.+.++.+|+ |+...++
T Consensus 260 ~~rV~~-~T~D-----g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~ 332 (764)
T TIGR03074 260 ARRIIL-PTSD-----ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTD 332 (764)
T ss_pred CCEEEE-ecCC-----CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-Eeccccccccc
Confidence 335655 3222 3478888888877776321 110 011111 11222333545555 5432111
Q ss_pred CccCcEEEEecCCCCCceEEecCCC----CCCC-----CCCc---EEEEEC--CcEEEEEcccCCC--------CCCccc
Q 042793 359 VLLSDTFLLDLSMEKPVWREIPVTW----TPPS-----RLGH---TLSVYG--GRKILMFGGLAKS--------GPLRFR 416 (545)
Q Consensus 359 ~~~~~~~~~d~~~~~~~W~~~~~~~----~p~~-----r~~~---~~~~~~--~~~lyi~GG~~~~--------~~~~~~ 416 (545)
.....+..||..+.+..|+.-...+ .+.+ +.+. ....++ .+.+|+=-|.... .....+
T Consensus 333 ~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y 412 (764)
T TIGR03074 333 EPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKY 412 (764)
T ss_pred CCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccc
Confidence 2345689999988888897543110 0101 0100 112232 2356653332110 111235
Q ss_pred cCcEEEEeCCCCCCceEEee
Q 042793 417 SSDVFTMDLSEEEPCWRCVT 436 (545)
Q Consensus 417 ~~~i~~~d~~~~~~~W~~v~ 436 (545)
.+.+..+|+++....|..-.
T Consensus 413 ~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQT 432 (764)
T ss_pred cceEEEEeCCCCceEEEecc
Confidence 78899999998778897643
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=84.36 E-value=58 Score=34.25 Aligned_cols=54 Identities=13% Similarity=0.176 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCC
Q 042793 242 RVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGR 304 (545)
Q Consensus 242 ~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~ 304 (545)
.-++.+|.++ .+..|...++..+|..... ....++.--+++++ + .+.+-||.+.
T Consensus 258 d~vfsaGvd~------~ii~~~~~~~~~~wv~~~~-r~~h~hdvrs~av~-~-~~l~sgG~d~ 311 (691)
T KOG2048|consen 258 DRVFSAGVDP------KIIQYSLTTNKSEWVINSR-RDLHAHDVRSMAVI-E-NALISGGRDF 311 (691)
T ss_pred CeEEEccCCC------ceEEEEecCCccceeeecc-ccCCcccceeeeee-c-ceEEecceee
Confidence 4555566543 6778887777667986542 22334555566666 4 3777888753
No 137
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=84.29 E-value=45 Score=32.90 Aligned_cols=114 Identities=17% Similarity=0.099 Sum_probs=61.0
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCC----CcccCcEEEEec
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGR----QGLLNDVFVLDL 316 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~----~~~~~~~~~yd~ 316 (545)
..+||.-..... ..+.++++|..+. +-. . ..+.+...+.+..-+++.+|+.-.+.. ....+.+.+||+
T Consensus 13 ~~v~V~d~~~~~--~~~~v~ViD~~~~--~v~--g--~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~ 84 (352)
T TIGR02658 13 RRVYVLDPGHFA--ATTQVYTIDGEAG--RVL--G--MTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDP 84 (352)
T ss_pred CEEEEECCcccc--cCceEEEEECCCC--EEE--E--EEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 346776543211 1268999999865 332 2 122222223333456778999876321 113467999999
Q ss_pred CCCCCceEeccCCCCCCCCcc------ceEEEEcCCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 317 DAKPPTWREISGLAPPLPRSW------HSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 317 ~t~~~~W~~~~~~~~~~~r~~------~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
.|....- +++.. +.||.. ..+..-+|+.+||..= .+-+.+-+.|+.
T Consensus 85 ~t~~~~~-~i~~p--~~p~~~~~~~~~~~~ls~dgk~l~V~n~-----~p~~~V~VvD~~ 136 (352)
T TIGR02658 85 QTHLPIA-DIELP--EGPRFLVGTYPWMTSLTPDNKTLLFYQF-----SPSPAVGVVDLE 136 (352)
T ss_pred ccCcEEe-EEccC--CCchhhccCccceEEECCCCCEEEEecC-----CCCCEEEEEECC
Confidence 9882222 33332 344421 2233345667887531 234568889965
No 138
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.35 E-value=45 Score=30.86 Aligned_cols=116 Identities=17% Similarity=0.256 Sum_probs=69.4
Q ss_pred EEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCc
Q 042793 340 SCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSD 419 (545)
Q Consensus 340 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~ 419 (545)
.+++++.+-|++=|... ..+-..|..+....|+.+-. .|.-.+++++++ .+++|-+ ...
T Consensus 16 LVV~~dskT~v~igSHs-----~~~~avd~~sG~~~We~ilg-----~RiE~sa~vvgd--fVV~GCy---------~g~ 74 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHS-----GIVIAVDPQSGNLIWEAILG-----VRIECSAIVVGD--FVVLGCY---------SGG 74 (354)
T ss_pred EEEecCCceEEEEecCC-----ceEEEecCCCCcEEeehhhC-----ceeeeeeEEECC--EEEEEEc---------cCc
Confidence 34555555555544322 23566777777888987642 455566777776 4677765 577
Q ss_pred EEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEE
Q 042793 420 VFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRI 497 (545)
Q Consensus 420 i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~ 497 (545)
+|.++.++...-|..+... ... ..+.+-.++.++-.|-. ...+|.+|+.+.+-.|+.
T Consensus 75 lYfl~~~tGs~~w~f~~~~--------------~vk-~~a~~d~~~glIycgsh------d~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 75 LYFLCVKTGSQIWNFVILE--------------TVK-VRAQCDFDGGLIYCGSH------DGNFYALDPKTYGCVYKS 131 (354)
T ss_pred EEEEEecchhheeeeeehh--------------hhc-cceEEcCCCceEEEecC------CCcEEEecccccceEEec
Confidence 8999988766778776533 111 11222224444444442 256899999876667773
No 139
>PRK04792 tolB translocation protein TolB; Provisional
Probab=81.08 E-value=71 Score=32.89 Aligned_cols=148 Identities=16% Similarity=0.240 Sum_probs=74.6
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCC
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSR 388 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 388 (545)
..+|++|+.+. +-+.+... +. ........-+|+.+++....+ + ..++|.+|+. +.+.+.+... . ..
T Consensus 242 ~~L~~~dl~tg--~~~~lt~~--~g-~~~~~~wSPDG~~La~~~~~~--g--~~~Iy~~dl~--tg~~~~lt~~--~-~~ 307 (448)
T PRK04792 242 AEIFVQDIYTQ--VREKVTSF--PG-INGAPRFSPDGKKLALVLSKD--G--QPEIYVVDIA--TKALTRITRH--R-AI 307 (448)
T ss_pred cEEEEEECCCC--CeEEecCC--CC-CcCCeeECCCCCEEEEEEeCC--C--CeEEEEEECC--CCCeEECccC--C-CC
Confidence 47999999887 55555543 11 111112233565666553321 1 2468999965 4466666531 1 11
Q ss_pred CCcEEEE-ECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEE
Q 042793 389 LGHTLSV-YGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRI 467 (545)
Q Consensus 389 ~~~~~~~-~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l 467 (545)
...... -+++.|++.... .+ ..++|.+|+. +.+++.+... + ......++ ..+++.
T Consensus 308 -~~~p~wSpDG~~I~f~s~~--~g-----~~~Iy~~dl~--~g~~~~Lt~~---------g----~~~~~~~~-SpDG~~ 363 (448)
T PRK04792 308 -DTEPSWHPDGKSLIFTSER--GG-----KPQIYRVNLA--SGKVSRLTFE---------G----EQNLGGSI-TPDGRS 363 (448)
T ss_pred -ccceEECCCCCEEEEEECC--CC-----CceEEEEECC--CCCEEEEecC---------C----CCCcCeeE-CCCCCE
Confidence 111222 234355544321 11 3689999998 6778777522 1 01111122 335554
Q ss_pred EEEcCcCCCCCCCCceEEEcCCCCCCceEEec
Q 042793 468 LIFGGSVAGLHSATQLYLLDPTEEKPTWRILN 499 (545)
Q Consensus 468 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~ 499 (545)
+++.+... ...+++.+|++ +...+.+.
T Consensus 364 l~~~~~~~---g~~~I~~~dl~--~g~~~~lt 390 (448)
T PRK04792 364 MIMVNRTN---GKFNIARQDLE--TGAMQVLT 390 (448)
T ss_pred EEEEEecC---CceEEEEEECC--CCCeEEcc
Confidence 44433321 13478999986 44555553
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=80.99 E-value=36 Score=35.68 Aligned_cols=131 Identities=10% Similarity=0.187 Sum_probs=70.6
Q ss_pred CCCCCCccceeEE--EEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCC--CCCccceEEEEcCCEEEEEc
Q 042793 277 SSPPPGRWGHTLS--CVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPP--LPRSWHSSCTLDGTKLIVSG 352 (545)
Q Consensus 277 ~~~~~~r~~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~--~~r~~~~~~~~~~~~iyv~G 352 (545)
..+|..+...+.. .++++++++.. ....+++.++.++. +-.++.+.... .+-..+-++.-+|+.|.+++
T Consensus 422 ~~~~~~~~~a~~i~ftid~~k~~~~s-----~~~~~le~~el~~p--s~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~ 494 (691)
T KOG2048|consen 422 DDVPLALLDASAISFTIDKNKLFLVS-----KNIFSLEEFELETP--SFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS 494 (691)
T ss_pred ccchhhhccceeeEEEecCceEEEEe-----cccceeEEEEecCc--chhhhhccccccCCCcceeEEEcCCCCEEEEEe
Confidence 3666666444443 35677888875 23356788888877 66655543111 11122223333677888887
Q ss_pred CCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEE--ECCcEEEEEcccCCCCCCccccCcEEEEeCCCC-C
Q 042793 353 GCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSV--YGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEE-E 429 (545)
Q Consensus 353 G~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~--~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~-~ 429 (545)
+. ..+++|++.+....|-... ++ +..-+++. ...+.|.+.-- .+.++.||++.. -
T Consensus 495 t~-------g~I~v~nl~~~~~~~l~~r---ln--~~vTa~~~~~~~~~~lvvats----------~nQv~efdi~~~~l 552 (691)
T KOG2048|consen 495 TR-------GQIFVYNLETLESHLLKVR---LN--IDVTAAAFSPFVRNRLVVATS----------NNQVFEFDIEARNL 552 (691)
T ss_pred cc-------ceEEEEEcccceeecchhc---cC--cceeeeeccccccCcEEEEec----------CCeEEEEecchhhh
Confidence 64 4599999775544443321 22 22222211 12235665532 488999998531 1
Q ss_pred CceEEee
Q 042793 430 PCWRCVT 436 (545)
Q Consensus 430 ~~W~~v~ 436 (545)
.+|.+..
T Consensus 553 ~~ws~~n 559 (691)
T KOG2048|consen 553 TRWSKNN 559 (691)
T ss_pred hhhhhcc
Confidence 3565543
No 141
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=80.75 E-value=51 Score=31.06 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=33.5
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEE-eccCCCCCCccceeEEE-EcCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQH-VHVSSPPPGRWGHTLSC-VNGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~-~~~~~~~~~r~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
..+|+.++.+ +.+.++|+.+. +... +. ....+ ..++. -+++.+|+.++.+ +.+.+||+.+
T Consensus 43 ~~l~~~~~~~------~~v~~~d~~~~--~~~~~~~--~~~~~---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~ 104 (300)
T TIGR03866 43 KLLYVCASDS------DTIQVIDLATG--EVIGTLP--SGPDP---ELFALHPNGKILYIANEDD-----NLVTVIDIET 104 (300)
T ss_pred CEEEEEECCC------CeEEEEECCCC--cEEEecc--CCCCc---cEEEECCCCCEEEEEcCCC-----CeEEEEECCC
Confidence 4577776532 26888998876 4432 22 11112 12222 2445676665432 3688999987
Q ss_pred C
Q 042793 319 K 319 (545)
Q Consensus 319 ~ 319 (545)
.
T Consensus 105 ~ 105 (300)
T TIGR03866 105 R 105 (300)
T ss_pred C
Confidence 6
No 142
>PRK04792 tolB translocation protein TolB; Provisional
Probab=80.16 E-value=76 Score=32.67 Aligned_cols=187 Identities=16% Similarity=0.224 Sum_probs=84.9
Q ss_pred ccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCC
Q 042793 307 LLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPP 386 (545)
Q Consensus 307 ~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~ 386 (545)
....+++.|.+.. .-+.+... +. ........-+|++++...-. .+ ...+|++|+.+. +-+.+.. .+.
T Consensus 196 ~~~~l~i~d~dG~--~~~~l~~~--~~-~~~~p~wSPDG~~La~~s~~--~g--~~~L~~~dl~tg--~~~~lt~--~~g 262 (448)
T PRK04792 196 YPYQLMIADYDGY--NEQMLLRS--PE-PLMSPAWSPDGRKLAYVSFE--NR--KAEIFVQDIYTQ--VREKVTS--FPG 262 (448)
T ss_pred CceEEEEEeCCCC--CceEeecC--CC-cccCceECCCCCEEEEEEec--CC--CcEEEEEECCCC--CeEEecC--CCC
Confidence 3456788887665 33333322 11 11111222345455443211 11 246899997543 4444542 221
Q ss_pred CCCCcEEEEE-CCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCC
Q 042793 387 SRLGHTLSVY-GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGG 465 (545)
Q Consensus 387 ~r~~~~~~~~-~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~ 465 (545)
. .. +.... +++.|++..... + ..++|.+|+. +.+.+.+... . ......... .++
T Consensus 263 ~-~~-~~~wSPDG~~La~~~~~~--g-----~~~Iy~~dl~--tg~~~~lt~~------------~-~~~~~p~wS-pDG 317 (448)
T PRK04792 263 I-NG-APRFSPDGKKLALVLSKD--G-----QPEIYVVDIA--TKALTRITRH------------R-AIDTEPSWH-PDG 317 (448)
T ss_pred C-cC-CeeECCCCCEEEEEEeCC--C-----CeEEEEEECC--CCCeEECccC------------C-CCccceEEC-CCC
Confidence 1 11 12222 344565543221 1 3689999998 6677766432 1 011111222 245
Q ss_pred EEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeecc
Q 042793 466 RILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 466 ~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
+.+++..... ...++|.+|++ +.+++.+...+.. ........+++.+++.+.... ..++|++|+++
T Consensus 318 ~~I~f~s~~~---g~~~Iy~~dl~--~g~~~~Lt~~g~~-----~~~~~~SpDG~~l~~~~~~~g---~~~I~~~dl~~ 383 (448)
T PRK04792 318 KSLIFTSERG---GKPQIYRVNLA--SGKVSRLTFEGEQ-----NLGGSITPDGRSMIMVNRTNG---KFNIARQDLET 383 (448)
T ss_pred CEEEEEECCC---CCceEEEEECC--CCCEEEEecCCCC-----CcCeeECCCCCEEEEEEecCC---ceEEEEEECCC
Confidence 4333322111 13579999996 5667777422211 111222334444444333221 24577777653
No 143
>PRK05137 tolB translocation protein TolB; Provisional
Probab=79.81 E-value=76 Score=32.47 Aligned_cols=195 Identities=19% Similarity=0.253 Sum_probs=92.5
Q ss_pred CceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCc
Q 042793 257 NDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRS 336 (545)
Q Consensus 257 ~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~ 336 (545)
..+|++|+.+. +.+.+. ..+..-...+ ..-++++|++....++ ..++|++|+.+. .-.++... +. ..
T Consensus 226 ~~i~~~dl~~g--~~~~l~--~~~g~~~~~~-~SPDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~Lt~~--~~-~~ 292 (435)
T PRK05137 226 PRVYLLDLETG--QRELVG--NFPGMTFAPR-FSPDGRKVVMSLSQGG---NTDIYTMDLRSG--TTTRLTDS--PA-ID 292 (435)
T ss_pred CEEEEEECCCC--cEEEee--cCCCcccCcE-ECCCCCEEEEEEecCC---CceEEEEECCCC--ceEEccCC--CC-cc
Confidence 48999999877 666554 2222111111 1235556655443222 257999999888 66666543 11 11
Q ss_pred cceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccc
Q 042793 337 WHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFR 416 (545)
Q Consensus 337 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~ 416 (545)
......-+|+.|++.... .+ ..++|.+|+. +...+.+... ..........-+++.|++... .. +
T Consensus 293 ~~~~~spDG~~i~f~s~~--~g--~~~Iy~~d~~--g~~~~~lt~~---~~~~~~~~~SpdG~~ia~~~~-~~-~----- 356 (435)
T PRK05137 293 TSPSYSPDGSQIVFESDR--SG--SPQLYVMNAD--GSNPRRISFG---GGRYSTPVWSPRGDLIAFTKQ-GG-G----- 356 (435)
T ss_pred CceeEcCCCCEEEEEECC--CC--CCeEEEEECC--CCCeEEeecC---CCcccCeEECCCCCEEEEEEc-CC-C-----
Confidence 112223345555544321 11 2468899865 3355665431 111222122223435554432 11 1
Q ss_pred cCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceE
Q 042793 417 SSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWR 496 (545)
Q Consensus 417 ~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~ 496 (545)
...++.+|+. +...+.+... .......+ ..+++.+++-....+......+|.+|++ ...-+
T Consensus 357 ~~~i~~~d~~--~~~~~~lt~~--------------~~~~~p~~-spDG~~i~~~~~~~~~~~~~~L~~~dl~--g~~~~ 417 (435)
T PRK05137 357 QFSIGVMKPD--GSGERILTSG--------------FLVEGPTW-APNGRVIMFFRQTPGSGGAPKLYTVDLT--GRNER 417 (435)
T ss_pred ceEEEEEECC--CCceEeccCC--------------CCCCCCeE-CCCCCEEEEEEccCCCCCcceEEEEECC--CCceE
Confidence 2578889986 4444444211 11111222 2356655553322111112579999986 33334
Q ss_pred Eec
Q 042793 497 ILN 499 (545)
Q Consensus 497 ~~~ 499 (545)
.+.
T Consensus 418 ~l~ 420 (435)
T PRK05137 418 EVP 420 (435)
T ss_pred Ecc
Confidence 553
No 144
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=79.67 E-value=2.1 Score=34.67 Aligned_cols=44 Identities=20% Similarity=0.155 Sum_probs=34.4
Q ss_pred eEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeeeecc
Q 042793 46 EFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEANV 91 (545)
Q Consensus 46 ~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite~~ 91 (545)
.....+....+||+.+ ..+...|+|++|++++.+++-.|+|...
T Consensus 67 ~~~~nY~~~~~~Gk~l--rSsT~~Ird~~g~~iG~LCIN~D~s~~~ 110 (118)
T PF08348_consen 67 DYIINYKTKTKDGKIL--RSSTFFIRDENGKLIGALCINFDISALE 110 (118)
T ss_pred CccccccccCCCCCEE--EEEEEEEECCCCCEEEEEEEEeccHHHH
Confidence 3444455568899754 4567789999999999999999999655
No 145
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=78.53 E-value=3.9 Score=39.25 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=42.2
Q ss_pred cCCcceeEEEEEEEeecCCCCEEEEEEEeeeeeecccCCCCCCchhHHHhh-hhhhhhccccc
Q 042793 56 KDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEANVDLGPVPGYPVKEFLK-SSERQRSFFSG 117 (545)
Q Consensus 56 kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite~~~~~~~~~~~~~~~~~-~~~r~~~~~~~ 117 (545)
.+++.+-..++.+.|+.+.|-+.++|++..|+||+.+. ++..++... ..|-++.-+.+
T Consensus 184 ~~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~----e~ErRefvanvSHElRTPlts 242 (459)
T COG5002 184 DEEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKV----ERERREFVANVSHELRTPLTS 242 (459)
T ss_pred CCCccEEEEEEEEEEeecccccceeEEEEecccHHHHH----HHHHHHHHHhcchhhcCchHH
Confidence 37788788899999999999999999999999988743 222233222 55556655554
No 146
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=78.25 E-value=57 Score=30.15 Aligned_cols=225 Identities=15% Similarity=0.152 Sum_probs=88.8
Q ss_pred ceeeEEECCEEEEEcC-CCCCCCccCceEEEe---CCCCCCceEEeccCCCCC-------CccceeEEEEcCCEEEEEcC
Q 042793 233 NFSACAVGNRVVLFGG-EGVNMQPMNDTFVLD---LNSSNPEWQHVHVSSPPP-------GRWGHTLSCVNGSHLVVFGG 301 (545)
Q Consensus 233 ~~~~~~~~~~lyv~GG-~~~~~~~~~~~~~~d---~~t~~~~W~~~~~~~~~~-------~r~~~~~~~~~~~~iyv~GG 301 (545)
++++-+++|+||.+=- ....+..+.....+| ...+ .|+..+.+..+. ...-|+.+.++++ =|.+|=
T Consensus 77 CmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~s--pW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~-~fA~Gy 153 (367)
T PF12217_consen 77 CMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDS--PWRITELGTIASFTSAGVAVTELHSFATIDDN-QFAVGY 153 (367)
T ss_dssp -B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS----EEEEEES-TT--------SEEEEEEE-SSS--EEEEE
T ss_pred eeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccC--CceeeecccccccccccceeeeeeeeeEecCC-ceeEEe
Confidence 4566788999987642 111112222223333 2333 887654333333 4456888888664 567764
Q ss_pred CCCCcccCcEEEEecCCC----C-CceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCce
Q 042793 302 CGRQGLLNDVFVLDLDAK----P-PTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVW 376 (545)
Q Consensus 302 ~~~~~~~~~~~~yd~~t~----~-~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W 376 (545)
.+++-....+-++-.... . ..=+.+++. -.+-+.-.++...++.+|+.---..+..+-+.+..-+ .....|
T Consensus 154 HnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~se--y~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~--d~G~~w 229 (367)
T PF12217_consen 154 HNGDVSPRELGFLYFSDAFASPGVFVRRIIPSE--YERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSD--DNGQNW 229 (367)
T ss_dssp EE-SSSS-EEEEEEETTTTT-TT--EEEE--GG--G-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEES--STTSS-
T ss_pred ccCCCCcceeeEEEecccccCCcceeeeechhh--hccccccchhhhhCCEEEEEEcCcCCCCCcceeeeec--ccCCch
Confidence 443333333332221110 0 011233321 1111222233444669998732212222223455555 335589
Q ss_pred EEecCCCCCCC--CCCcEEEEECCcEEEEEcccCCCCCC---------ccccCcE--EEEeCCC---CCCceEEeecCCC
Q 042793 377 REIPVTWTPPS--RLGHTLSVYGGRKILMFGGLAKSGPL---------RFRSSDV--FTMDLSE---EEPCWRCVTGSGM 440 (545)
Q Consensus 377 ~~~~~~~~p~~--r~~~~~~~~~~~~lyi~GG~~~~~~~---------~~~~~~i--~~~d~~~---~~~~W~~v~~~~~ 440 (545)
+.+.. |.. -.....+.+++ .|||||.....+.. .-..... .+.+... +..+|..+...
T Consensus 230 ~slrf---p~nvHhtnlPFakvgD-~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdq-- 303 (367)
T PF12217_consen 230 SSLRF---PNNVHHTNLPFAKVGD-VLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQ-- 303 (367)
T ss_dssp EEEE----TT---SS---EEEETT-EEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE---
T ss_pred hhccc---cccccccCCCceeeCC-EEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecc--
Confidence 88763 211 11223456666 99999853221111 0001111 1222221 25578777643
Q ss_pred CCCCCCCCCCCCCCcceEEEEecCCEEE-EEcCcC
Q 042793 441 PGAGNPGGIAPPPRLDHVAVSLPGGRIL-IFGGSV 474 (545)
Q Consensus 441 ~~~~~~~g~~p~~r~~~~~~~~~~~~l~-v~GG~~ 474 (545)
.-.|..-..-.+-.++++.++.|| +|||.+
T Consensus 304 ----IYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 304 ----IYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp ----BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred ----eeccccccccccceeEEEECCEEEEEecCcc
Confidence 112333333355567777688874 888865
No 147
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=76.57 E-value=41 Score=27.57 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=50.7
Q ss_pred EcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCC-CCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEE
Q 042793 343 LDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVT-WTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVF 421 (545)
Q Consensus 343 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~ 421 (545)
++| -+|-..-. .......+..||+..+ +|+.+..+ ...........+.+++ +|-++.-...... ..-++|
T Consensus 4 inG-vly~~a~~--~~~~~~~IvsFDv~~E--~f~~i~~P~~~~~~~~~~~L~~~~G-~L~~v~~~~~~~~---~~~~iW 74 (129)
T PF08268_consen 4 ING-VLYWLAWS--EDSDNNVIVSFDVRSE--KFRFIKLPEDPYSSDCSSTLIEYKG-KLALVSYNDQGEP---DSIDIW 74 (129)
T ss_pred ECc-EEEeEEEE--CCCCCcEEEEEEcCCc--eEEEEEeeeeeccccCccEEEEeCC-eEEEEEecCCCCc---ceEEEE
Confidence 444 55554433 1223456899998755 88877642 1223455566777877 7777654433221 247899
Q ss_pred EEeCCCCCCceEEeecC
Q 042793 422 TMDLSEEEPCWRCVTGS 438 (545)
Q Consensus 422 ~~d~~~~~~~W~~v~~~ 438 (545)
+++- .+..+|.+....
T Consensus 75 vLeD-~~k~~Wsk~~~~ 90 (129)
T PF08268_consen 75 VLED-YEKQEWSKKHIV 90 (129)
T ss_pred Eeec-cccceEEEEEEE
Confidence 9962 225789977553
No 148
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=76.44 E-value=62 Score=31.52 Aligned_cols=114 Identities=19% Similarity=0.147 Sum_probs=58.9
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCC----CcccCcEEEEec
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGR----QGLLNDVFVLDL 316 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~----~~~~~~~~~yd~ 316 (545)
.++||.--.... ....++++|..+. +..- .++.+-.++.+..-+++.+|+..=+-. ....+-+.+||.
T Consensus 3 ~rvyV~D~~~~~--~~~rv~viD~d~~--k~lG----mi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~ 74 (342)
T PF06433_consen 3 HRVYVQDPVFFH--MTSRVYVIDADSG--KLLG----MIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDT 74 (342)
T ss_dssp TEEEEEE-GGGG--SSEEEEEEETTTT--EEEE----EEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEET
T ss_pred cEEEEECCcccc--ccceEEEEECCCC--cEEE----EeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEec
Confidence 456776432111 1247899998876 4332 123333444444446677888653211 114556899999
Q ss_pred CCCCCceEe-ccCCCCCCCCcc------ceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCC
Q 042793 317 DAKPPTWRE-ISGLAPPLPRSW------HSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSM 371 (545)
Q Consensus 317 ~t~~~~W~~-~~~~~~~~~r~~------~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 371 (545)
.|-..+++. +|+ .+|.. ..+..-+|+.+||+- -.+...+-+.|+..
T Consensus 75 ~TL~~~~EI~iP~----k~R~~~~~~~~~~~ls~dgk~~~V~N-----~TPa~SVtVVDl~~ 127 (342)
T PF06433_consen 75 QTLSPTGEIEIPP----KPRAQVVPYKNMFALSADGKFLYVQN-----FTPATSVTVVDLAA 127 (342)
T ss_dssp TTTEEEEEEEETT----S-B--BS--GGGEEE-TTSSEEEEEE-----ESSSEEEEEEETTT
T ss_pred CcCcccceEecCC----cchheecccccceEEccCCcEEEEEc-----cCCCCeEEEEECCC
Confidence 998555653 332 22332 122233566677753 23456788888653
No 149
>PF09884 DUF2111: Uncharacterized protein conserved in archaea (DUF2111); InterPro: IPR012029 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, members of PIRSF036667 from PIRSF possess a domain homologous to these proteins fused within a signal transduction sensor protein containing PAS/PAC and GAF domains. Therefore, it is possible that members of this family are involved in signal transduction (possibly as a sensor).
Probab=76.25 E-value=17 Score=26.85 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=35.5
Q ss_pred HHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeee
Q 042793 36 EIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTE 88 (545)
Q Consensus 36 ~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dit 88 (545)
.+++.+..++. ++..-..|...=.-+.++||++++|+++..+|++ |+|
T Consensus 36 VLe~vl~~g~v----~r~~P~~G~Y~G~PViV~PI~~~~g~viaAiGvV-D~t 83 (84)
T PF09884_consen 36 VLEEVLETGKV----IRVTPIEGPYKGVPVIVAPIKDEDGEVIAAIGVV-DLT 83 (84)
T ss_pred HHHHHHHcCCE----EEeccCCcccCCeeEEEEEEEcCCCCEEEEEEEE-Ecc
Confidence 35566666653 3334567887777888999999999999999984 665
No 150
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=75.91 E-value=93 Score=31.41 Aligned_cols=179 Identities=21% Similarity=0.248 Sum_probs=85.7
Q ss_pred EECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccC-CCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEec
Q 042793 238 AVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVS-SPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDL 316 (545)
Q Consensus 238 ~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~-~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 316 (545)
..++.+++.|+.+. -+-..|+.+. . .++... ..-.-|++ ++...+ +.|++-||+++ .+-.||.
T Consensus 120 ~~d~t~l~s~sDd~------v~k~~d~s~a--~-v~~~l~~htDYVR~g-~~~~~~-~hivvtGsYDg-----~vrl~Dt 183 (487)
T KOG0310|consen 120 PQDNTMLVSGSDDK------VVKYWDLSTA--Y-VQAELSGHTDYVRCG-DISPAN-DHIVVTGSYDG-----KVRLWDT 183 (487)
T ss_pred ccCCeEEEecCCCc------eEEEEEcCCc--E-EEEEecCCcceeEee-ccccCC-CeEEEecCCCc-----eEEEEEe
Confidence 45789999998642 2333444443 2 222211 12223432 222233 47999999876 3667777
Q ss_pred CCCCCceEeccCCCCCCCCccceEEEEc-CCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEE
Q 042793 317 DAKPPTWREISGLAPPLPRSWHSSCTLD-GTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSV 395 (545)
Q Consensus 317 ~t~~~~W~~~~~~~~~~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~ 395 (545)
.+.+ .|. ...+.-.|.. ..+.+. |..|.-.|| +.+-++|+.++...-..... .-..--|++.
T Consensus 184 R~~~-~~v--~elnhg~pVe--~vl~lpsgs~iasAgG--------n~vkVWDl~~G~qll~~~~~----H~KtVTcL~l 246 (487)
T KOG0310|consen 184 RSLT-SRV--VELNHGCPVE--SVLALPSGSLIASAGG--------NSVKVWDLTTGGQLLTSMFN----HNKTVTCLRL 246 (487)
T ss_pred ccCC-cee--EEecCCCcee--eEEEcCCCCEEEEcCC--------CeEEEEEecCCceehhhhhc----ccceEEEEEe
Confidence 7662 232 2221111221 123333 334444555 34666775433111111110 1111123333
Q ss_pred ECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcC
Q 042793 396 YGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSV 474 (545)
Q Consensus 396 ~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~ 474 (545)
..++.=++.||.+ ..+-+||.. .|+.+-... .|.|.. ...+..++..+++|..+
T Consensus 247 ~s~~~rLlS~sLD---------~~VKVfd~t----~~Kvv~s~~----------~~~pvL--siavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 247 ASDSTRLLSGSLD---------RHVKVFDTT----NYKVVHSWK----------YPGPVL--SIAVSPDDQTVVIGMSN 300 (487)
T ss_pred ecCCceEeecccc---------cceEEEEcc----ceEEEEeee----------ccccee--eEEecCCCceEEEeccc
Confidence 3333445566653 567788854 377776552 344433 23333478888998865
No 151
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=75.75 E-value=70 Score=29.88 Aligned_cols=161 Identities=12% Similarity=0.049 Sum_probs=81.4
Q ss_pred CCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCc-eEEeccCCC----CCCccceeEE--EEcCCEEEEEc
Q 042793 228 EPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPE-WQHVHVSSP----PPGRWGHTLS--CVNGSHLVVFG 300 (545)
Q Consensus 228 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~-W~~~~~~~~----~~~r~~~~~~--~~~~~~iyv~G 300 (545)
|-+-.+.+.+++++.+|.--. .++.+.+||+.++... +..|+.... +....+++-. +++++-|.|+=
T Consensus 66 p~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIY 139 (250)
T PF02191_consen 66 PYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIY 139 (250)
T ss_pred eceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEE
Confidence 444556677788888887543 3468999999988433 444432211 1111112211 23444566664
Q ss_pred CCCCCcccCcEEEEecCCCC--CceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEE
Q 042793 301 GCGRQGLLNDVFVLDLDAKP--PTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWRE 378 (545)
Q Consensus 301 G~~~~~~~~~~~~yd~~t~~--~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~ 378 (545)
......-.--+-..|+.+-. .+|.. +. +.+..+.+-++| | .+|+....+... ..-.+.||+.++ +=..
T Consensus 140 at~~~~g~ivvskld~~tL~v~~tw~T--~~--~k~~~~naFmvC-G-vLY~~~s~~~~~--~~I~yafDt~t~--~~~~ 209 (250)
T PF02191_consen 140 ATEDNNGNIVVSKLDPETLSVEQTWNT--SY--PKRSAGNAFMVC-G-VLYATDSYDTRD--TEIFYAFDTYTG--KEED 209 (250)
T ss_pred ecCCCCCcEEEEeeCcccCceEEEEEe--cc--CchhhcceeeEe-e-EEEEEEECCCCC--cEEEEEEECCCC--ceec
Confidence 33222100112334544321 16653 22 444555555555 5 899987654332 234688996543 3333
Q ss_pred ecCCCCCCCCCCcEEEEEC--CcEEEEEc
Q 042793 379 IPVTWTPPSRLGHTLSVYG--GRKILMFG 405 (545)
Q Consensus 379 ~~~~~~p~~r~~~~~~~~~--~~~lyi~G 405 (545)
+.. ..+.+-..++++.++ +++||+..
T Consensus 210 ~~i-~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 210 VSI-PFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred eee-eeccccCceEeeeECCCCCeEEEEE
Confidence 332 233333445555554 45888873
No 152
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=75.15 E-value=64 Score=30.23 Aligned_cols=104 Identities=22% Similarity=0.222 Sum_probs=62.4
Q ss_pred cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCC
Q 042793 292 NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSM 371 (545)
Q Consensus 292 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 371 (545)
.++.+|.--|.-+. +.+..+|+.|+ +-.....+ |..-.+-..+.+ ++++|..-=. ....++||..
T Consensus 54 ~~g~LyESTG~yG~---S~l~~~d~~tg--~~~~~~~l--~~~~FgEGit~~-~d~l~qLTWk------~~~~f~yd~~- 118 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ---SSLRKVDLETG--KVLQSVPL--PPRYFGEGITIL-GDKLYQLTWK------EGTGFVYDPN- 118 (264)
T ss_dssp ETTEEEEEECSTTE---EEEEEEETTTS--SEEEEEE---TTT--EEEEEEE-TTEEEEEESS------SSEEEEEETT-
T ss_pred CCCEEEEeCCCCCc---EEEEEEECCCC--cEEEEEEC--CccccceeEEEE-CCEEEEEEec------CCeEEEEccc-
Confidence 56688887775543 57889999998 54433333 333333344444 6699987322 1357999943
Q ss_pred CCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 372 EKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 372 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
+.+.+.. .+.+..|-.++..+ +.||+-.| ++.++.+||+
T Consensus 119 ---tl~~~~~--~~y~~EGWGLt~dg-~~Li~SDG----------S~~L~~~dP~ 157 (264)
T PF05096_consen 119 ---TLKKIGT--FPYPGEGWGLTSDG-KRLIMSDG----------SSRLYFLDPE 157 (264)
T ss_dssp ---TTEEEEE--EE-SSS--EEEECS-SCEEEE-S----------SSEEEEE-TT
T ss_pred ---cceEEEE--EecCCcceEEEcCC-CEEEEECC----------ccceEEECCc
Confidence 4555543 34445777777544 48999888 4889999998
No 153
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=74.61 E-value=29 Score=28.41 Aligned_cols=83 Identities=16% Similarity=0.258 Sum_probs=50.5
Q ss_pred EECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccC-CCCCCccceeEEEEcCCEEEEEcCCCCCc-ccCcEEEE-
Q 042793 238 AVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVS-SPPPGRWGHTLSCVNGSHLVVFGGCGRQG-LLNDVFVL- 314 (545)
Q Consensus 238 ~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~-~~~~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~y- 314 (545)
.++|-+|-..-. .....+.+.+||+.+. +|+.++.+ ..........++.+.| +|-++.-..... ..-++|++
T Consensus 3 cinGvly~~a~~--~~~~~~~IvsFDv~~E--~f~~i~~P~~~~~~~~~~~L~~~~G-~L~~v~~~~~~~~~~~~iWvLe 77 (129)
T PF08268_consen 3 CINGVLYWLAWS--EDSDNNVIVSFDVRSE--KFRFIKLPEDPYSSDCSSTLIEYKG-KLALVSYNDQGEPDSIDIWVLE 77 (129)
T ss_pred EECcEEEeEEEE--CCCCCcEEEEEEcCCc--eEEEEEeeeeeccccCccEEEEeCC-eEEEEEecCCCCcceEEEEEee
Confidence 456777766543 1223457889999998 99988643 1223445566666766 676654333221 23478887
Q ss_pred ecCCCCCceEecc
Q 042793 315 DLDAKPPTWREIS 327 (545)
Q Consensus 315 d~~t~~~~W~~~~ 327 (545)
|..+. +|.+..
T Consensus 78 D~~k~--~Wsk~~ 88 (129)
T PF08268_consen 78 DYEKQ--EWSKKH 88 (129)
T ss_pred ccccc--eEEEEE
Confidence 45555 999654
No 154
>smart00284 OLF Olfactomedin-like domains.
Probab=72.82 E-value=83 Score=29.39 Aligned_cols=192 Identities=11% Similarity=-0.012 Sum_probs=88.9
Q ss_pred CEEEEEcCCCCCcccCcEEEEecC----CCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEec
Q 042793 294 SHLVVFGGCGRQGLLNDVFVLDLD----AKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDL 369 (545)
Q Consensus 294 ~~iyv~GG~~~~~~~~~~~~yd~~----t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~ 369 (545)
+++|++.+... ..+.++.|... .. .+.+.-.+ |.+-.+...++.+| .+|.--.. ...+.+||+
T Consensus 35 ~~~wv~~~~~~--~~~~v~ey~~~~~f~~~--~~~~~~~L--p~~~~GtG~VVYng-slYY~~~~------s~~iiKydL 101 (255)
T smart00284 35 SLYWYMPLNTR--VLRSVREYSSMSDFQMG--KNPTDHPL--PHAGQGTGVVVYNG-SLYFNKFN------SHDICRFDL 101 (255)
T ss_pred ceEEEEccccC--CCcEEEEecCHHHHhcc--CCceEEEC--CCccccccEEEECc-eEEEEecC------CccEEEEEC
Confidence 47888766431 12345555321 22 22222222 44455555667755 67764321 256999999
Q ss_pred CCCCCc-eEEecCC----CCCCCCCCcEE--EEECCcEEEEEcccCCCCCCccccCcEEEEeCCCC--CCceEEeecCCC
Q 042793 370 SMEKPV-WREIPVT----WTPPSRLGHTL--SVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEE--EPCWRCVTGSGM 440 (545)
Q Consensus 370 ~~~~~~-W~~~~~~----~~p~~r~~~~~--~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~--~~~W~~v~~~~~ 440 (545)
.+.+.. +..++.. ..|-...+++- ..++++-|+++=....+.. .--|-++|+.+- ..+|..-
T Consensus 102 ~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g----~ivvSkLnp~tL~ve~tW~T~----- 172 (255)
T smart00284 102 TTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG----KIVISKLNPATLTIENTWITT----- 172 (255)
T ss_pred CCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC----CEEEEeeCcccceEEEEEEcC-----
Confidence 866443 3334321 11221212221 2233335665533222211 123345666520 1346531
Q ss_pred CCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeC--C
Q 042793 441 PGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVG--G 518 (545)
Q Consensus 441 ~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~ 518 (545)
.+.+..+.+.+++ |.||++-.. ......-.+.||+.+.+.....+ .++.+-..++++-.+ +
T Consensus 173 ---------~~k~sa~naFmvC--GvLY~~~s~--~~~~~~I~yayDt~t~~~~~~~i----~f~n~y~~~s~l~YNP~d 235 (255)
T smart00284 173 ---------YNKRSASNAFMIC--GILYVTRSL--GSKGEKVFYAYDTNTGKEGHLDI----PFENMYEYISMLDYNPND 235 (255)
T ss_pred ---------CCcccccccEEEe--eEEEEEccC--CCCCcEEEEEEECCCCccceeee----eeccccccceeceeCCCC
Confidence 2444455555555 689988431 12222347889997543333333 233333334444432 4
Q ss_pred eeEEEE
Q 042793 519 TRTIVL 524 (545)
Q Consensus 519 ~~l~i~ 524 (545)
.+||+.
T Consensus 236 ~~LY~w 241 (255)
T smart00284 236 RKLYAW 241 (255)
T ss_pred CeEEEE
Confidence 677774
No 155
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=72.66 E-value=80 Score=29.16 Aligned_cols=167 Identities=14% Similarity=0.102 Sum_probs=84.2
Q ss_pred eeEEE--CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccC--CC-CCCccceeEEEEcCCEEEEEcCCCC-Cccc
Q 042793 235 SACAV--GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVS--SP-PPGRWGHTLSCVNGSHLVVFGGCGR-QGLL 308 (545)
Q Consensus 235 ~~~~~--~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~--~~-~~~r~~~~~~~~~~~~iyv~GG~~~-~~~~ 308 (545)
+++.. ++.+|+.... .+.++|+.+. +++.+... .. +..+..-. ++-.++.+|+---... ....
T Consensus 44 G~~~~~~~g~l~v~~~~--------~~~~~d~~~g--~~~~~~~~~~~~~~~~~~ND~-~vd~~G~ly~t~~~~~~~~~~ 112 (246)
T PF08450_consen 44 GMAFDRPDGRLYVADSG--------GIAVVDPDTG--KVTVLADLPDGGVPFNRPNDV-AVDPDGNLYVTDSGGGGASGI 112 (246)
T ss_dssp EEEEECTTSEEEEEETT--------CEEEEETTTT--EEEEEEEEETTCSCTEEEEEE-EE-TTS-EEEEEECCBCTTCG
T ss_pred eEEEEccCCEEEEEEcC--------ceEEEecCCC--cEEEEeeccCCCcccCCCceE-EEcCCCCEEEEecCCCccccc
Confidence 44444 6788877643 4566799887 88776532 11 22333223 2233346777532111 1111
Q ss_pred --CcEEEEecCCCCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecC-CCC
Q 042793 309 --NDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPV-TWT 384 (545)
Q Consensus 309 --~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~-~~~ 384 (545)
..++++++. . +.+.+... .... ...+.- +++.+|+.-- ..+.+++|+++..+..+..... ...
T Consensus 113 ~~g~v~~~~~~-~--~~~~~~~~---~~~p-NGi~~s~dg~~lyv~ds------~~~~i~~~~~~~~~~~~~~~~~~~~~ 179 (246)
T PF08450_consen 113 DPGSVYRIDPD-G--KVTVVADG---LGFP-NGIAFSPDGKTLYVADS------FNGRIWRFDLDADGGELSNRRVFIDF 179 (246)
T ss_dssp GSEEEEEEETT-S--EEEEEEEE---ESSE-EEEEEETTSSEEEEEET------TTTEEEEEEEETTTCCEEEEEEEEE-
T ss_pred cccceEEECCC-C--eEEEEecC---cccc-cceEECCcchheeeccc------ccceeEEEeccccccceeeeeeEEEc
Confidence 569999998 5 55544321 1111 122222 4556887532 2245999998655443432211 001
Q ss_pred CCC-CCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEee
Q 042793 385 PPS-RLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVT 436 (545)
Q Consensus 385 p~~-r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~ 436 (545)
+.. ..--.+++-.++.||+..-. ...|++||++ ...-..+.
T Consensus 180 ~~~~g~pDG~~vD~~G~l~va~~~---------~~~I~~~~p~--G~~~~~i~ 221 (246)
T PF08450_consen 180 PGGPGYPDGLAVDSDGNLWVADWG---------GGRIVVFDPD--GKLLREIE 221 (246)
T ss_dssp SSSSCEEEEEEEBTTS-EEEEEET---------TTEEEEEETT--SCEEEEEE
T ss_pred CCCCcCCCcceEcCCCCEEEEEcC---------CCEEEEECCC--ccEEEEEc
Confidence 111 12234555555689987331 3789999998 55555553
No 156
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=71.65 E-value=1.1e+02 Score=30.45 Aligned_cols=180 Identities=17% Similarity=0.175 Sum_probs=81.6
Q ss_pred CceEEEeCCCCCCceEEeccCCCCCCccceeEEEE--cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCC
Q 042793 257 NDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV--NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLP 334 (545)
Q Consensus 257 ~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~ 334 (545)
+.+.++|..+. ..-.+++. .-..|....+ +++++|+.+. + ..+-++|+.+.. .=.++.. +
T Consensus 16 ~~v~viD~~t~-~~~~~i~~-----~~~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~-~v~~i~~-----G 77 (369)
T PF02239_consen 16 GSVAVIDGATN-KVVARIPT-----GGAPHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGK-VVATIKV-----G 77 (369)
T ss_dssp TEEEEEETTT--SEEEEEE------STTEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSS-EEEEEE------S
T ss_pred CEEEEEECCCC-eEEEEEcC-----CCCceeEEEecCCCCEEEEEcC-C-----CeEEEEECCccc-EEEEEec-----C
Confidence 37889998876 12344431 1112443333 4678999853 2 368899999882 1113332 2
Q ss_pred CccceE-EEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCc-eEEecCCCC----CCCCCCcEEEEECCcEEEEEcccC
Q 042793 335 RSWHSS-CTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPV-WREIPVTWT----PPSRLGHTLSVYGGRKILMFGGLA 408 (545)
Q Consensus 335 r~~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~-W~~~~~~~~----p~~r~~~~~~~~~~~~lyi~GG~~ 408 (545)
...... ...+|+.+|+. .+ ..+++.++|.. +.+ -..++.... +.+|...-.....+ ..|++--.
T Consensus 78 ~~~~~i~~s~DG~~~~v~-n~-----~~~~v~v~D~~--tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-~~fVv~lk- 147 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYVA-NY-----EPGTVSVIDAE--TLEPVKTIPTGGMPVDGPESRVAAIVASPGR-PEFVVNLK- 147 (369)
T ss_dssp SEEEEEEE--TTTEEEEE-EE-----ETTEEEEEETT--T--EEEEEE--EE-TTTS---EEEEEE-SSS-SEEEEEET-
T ss_pred CCcceEEEcCCCCEEEEE-ec-----CCCceeEeccc--cccceeecccccccccccCCCceeEEecCCC-CEEEEEEc-
Confidence 222222 23456555553 22 12468888943 322 223332222 22333221122233 44554322
Q ss_pred CCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcC
Q 042793 409 KSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDP 488 (545)
Q Consensus 409 ~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~ 488 (545)
...++|..|.....+..... . ...++.|-+..-.+++.++.+-. ..+.+-..|.
T Consensus 148 -------d~~~I~vVdy~d~~~~~~~~--i------------~~g~~~~D~~~dpdgry~~va~~-----~sn~i~viD~ 201 (369)
T PF02239_consen 148 -------DTGEIWVVDYSDPKNLKVTT--I------------KVGRFPHDGGFDPDGRYFLVAAN-----GSNKIAVIDT 201 (369)
T ss_dssp -------TTTEEEEEETTTSSCEEEEE--E------------E--TTEEEEEE-TTSSEEEEEEG-----GGTEEEEEET
T ss_pred -------cCCeEEEEEeccccccceee--e------------cccccccccccCcccceeeeccc-----ccceeEEEee
Confidence 14789999876322222211 1 23445555555546666555432 2457888888
Q ss_pred CC
Q 042793 489 TE 490 (545)
Q Consensus 489 ~~ 490 (545)
++
T Consensus 202 ~~ 203 (369)
T PF02239_consen 202 KT 203 (369)
T ss_dssp TT
T ss_pred cc
Confidence 63
No 157
>PRK02889 tolB translocation protein TolB; Provisional
Probab=71.51 E-value=1.2e+02 Score=30.85 Aligned_cols=191 Identities=18% Similarity=0.181 Sum_probs=86.2
Q ss_pred CceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCc
Q 042793 257 NDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRS 336 (545)
Q Consensus 257 ~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~ 336 (545)
..+|..|.... ..+.+.... .+-.... ..-++++|++.. ... ....+|++|+.+. +=..+... + ...
T Consensus 176 ~~L~~~D~dG~--~~~~l~~~~--~~v~~p~-wSPDG~~la~~s-~~~--~~~~I~~~dl~~g--~~~~l~~~--~-g~~ 242 (427)
T PRK02889 176 YQLQISDADGQ--NAQSALSSP--EPIISPA-WSPDGTKLAYVS-FES--KKPVVYVHDLATG--RRRVVANF--K-GSN 242 (427)
T ss_pred cEEEEECCCCC--CceEeccCC--CCcccce-EcCCCCEEEEEE-ccC--CCcEEEEEECCCC--CEEEeecC--C-CCc
Confidence 47888887644 334332111 1111111 112454554432 221 1246999999887 44444432 1 111
Q ss_pred cceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEE-CCcEEEEEcccCCCCCCcc
Q 042793 337 WHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVY-GGRKILMFGGLAKSGPLRF 415 (545)
Q Consensus 337 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~lyi~GG~~~~~~~~~ 415 (545)
......-+|+++++....+ + ..++|.+|+.. ...+.+... . .... ..... ++..|++.... .+
T Consensus 243 ~~~~~SPDG~~la~~~~~~--g--~~~Iy~~d~~~--~~~~~lt~~--~-~~~~-~~~wSpDG~~l~f~s~~--~g---- 306 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRD--G--NSQIYTVNADG--SGLRRLTQS--S-GIDT-EPFFSPDGRSIYFTSDR--GG---- 306 (427)
T ss_pred cceEECCCCCEEEEEEccC--C--CceEEEEECCC--CCcEECCCC--C-CCCc-CeEEcCCCCEEEEEecC--CC----
Confidence 1122223565665543321 1 25688888643 345555431 1 1111 12222 34345543221 11
Q ss_pred ccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCce
Q 042793 416 RSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTW 495 (545)
Q Consensus 416 ~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W 495 (545)
..++|.++.. +.+.+.+... ...........+++.+++.....+ ...++.+|+. +.+.
T Consensus 307 -~~~Iy~~~~~--~g~~~~lt~~--------------g~~~~~~~~SpDG~~Ia~~s~~~g---~~~I~v~d~~--~g~~ 364 (427)
T PRK02889 307 -APQIYRMPAS--GGAAQRVTFT--------------GSYNTSPRISPDGKLLAYISRVGG---AFKLYVQDLA--TGQV 364 (427)
T ss_pred -CcEEEEEECC--CCceEEEecC--------------CCCcCceEECCCCCEEEEEEccCC---cEEEEEEECC--CCCe
Confidence 3578988877 5566666422 011111222235554444332211 1369999986 3455
Q ss_pred EEe
Q 042793 496 RIL 498 (545)
Q Consensus 496 ~~~ 498 (545)
+.+
T Consensus 365 ~~l 367 (427)
T PRK02889 365 TAL 367 (427)
T ss_pred EEc
Confidence 555
No 158
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=71.43 E-value=0.76 Score=47.74 Aligned_cols=43 Identities=9% Similarity=-0.218 Sum_probs=30.6
Q ss_pred EEeeecCCc-ceeEEEEEEEeecCCCCE---------EEEEEEeeeeeecccC
Q 042793 51 LLNFRKDGS-PLMNRLRLSPIYGDDETI---------THVIGIQFFTEANVDL 93 (545)
Q Consensus 51 ~~~~~kdG~-~~w~~~~~~pi~d~~g~~---------~~~i~~~~Dite~~~~ 93 (545)
....+++|. .+|+.....|+.+.+|.+ .+++++.+|||++|++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DITe~k~~ 254 (494)
T TIGR02938 202 ARFDRGGGRPARWLSCTGSVIGMESDCADSFFCAAEQPYLLLTIADISNLREE 254 (494)
T ss_pred eeeccCCCceeeEEEecCceEEeecchhhheeccCCCchheehHHHHHHHHHH
Confidence 333445555 789999988888776654 3456688999999965
No 159
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=71.05 E-value=1.1e+02 Score=29.84 Aligned_cols=105 Identities=20% Similarity=0.287 Sum_probs=55.7
Q ss_pred CcEEEEecCCC---CCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCC
Q 042793 309 NDVFVLDLDAK---PPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTP 385 (545)
Q Consensus 309 ~~~~~yd~~t~---~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p 385 (545)
..+.+|+.... ..+.+.+.....+.+ -.+.+.+++ ++.+.-| +.+++|++.... ++..... ..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~--V~ai~~~~~-~lv~~~g--------~~l~v~~l~~~~-~l~~~~~--~~ 127 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGP--VTAICSFNG-RLVVAVG--------NKLYVYDLDNSK-TLLKKAF--YD 127 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS---EEEEEEETT-EEEEEET--------TEEEEEEEETTS-SEEEEEE--E-
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCc--ceEhhhhCC-EEEEeec--------CEEEEEEccCcc-cchhhhe--ec
Confidence 56889988873 114555543311222 334555644 6666555 347788876542 3776654 33
Q ss_pred CCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecC
Q 042793 386 PSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGS 438 (545)
Q Consensus 386 ~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~ 438 (545)
.+-...++.+.++ .|+ +|-... +-.++.|+.+ ..+-..+...
T Consensus 128 ~~~~i~sl~~~~~-~I~-vgD~~~-------sv~~~~~~~~--~~~l~~va~d 169 (321)
T PF03178_consen 128 SPFYITSLSVFKN-YIL-VGDAMK-------SVSLLRYDEE--NNKLILVARD 169 (321)
T ss_dssp BSSSEEEEEEETT-EEE-EEESSS-------SEEEEEEETT--TE-EEEEEEE
T ss_pred ceEEEEEEecccc-EEE-EEEccc-------CEEEEEEEcc--CCEEEEEEec
Confidence 3335556666665 555 443321 3455667765 5567777655
No 160
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=70.29 E-value=45 Score=30.80 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=31.7
Q ss_pred eEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCC
Q 042793 236 ACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCG 303 (545)
Q Consensus 236 ~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~ 303 (545)
+-.++++||+.--...+...-+.+.+.+..-. .|..+..+. ...-...-.+.+ ++.||+||-..
T Consensus 196 vkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~--~w~slrfp~-nvHhtnlPFakv-gD~l~mFgsER 259 (367)
T PF12217_consen 196 VKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQ--NWSSLRFPN-NVHHTNLPFAKV-GDVLYMFGSER 259 (367)
T ss_dssp EEEETTEEEEEEEES-TTS---EEEEESSTTS--S-EEEE-TT----SS---EEEE-TTEEEEEEE-S
T ss_pred hhhhCCEEEEEEcCcCCCCCcceeeeecccCC--chhhccccc-cccccCCCceee-CCEEEEEeccc
Confidence 34569999988532222233346777776655 898775321 112222223344 56899999754
No 161
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=69.84 E-value=1.3e+02 Score=30.37 Aligned_cols=149 Identities=21% Similarity=0.255 Sum_probs=74.3
Q ss_pred CceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCc
Q 042793 257 NDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRS 336 (545)
Q Consensus 257 ~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~ 336 (545)
..++++|+.+. +.+.+. .........+ ..-++++|++.....+ ..+++.+|+.+. ..+.+... .....
T Consensus 214 ~~i~v~d~~~g--~~~~~~--~~~~~~~~~~-~spDg~~l~~~~~~~~---~~~i~~~d~~~~--~~~~l~~~--~~~~~ 281 (417)
T TIGR02800 214 PEIYVQDLATG--QREKVA--SFPGMNGAPA-FSPDGSKLAVSLSKDG---NPDIYVMDLDGK--QLTRLTNG--PGIDT 281 (417)
T ss_pred cEEEEEECCCC--CEEEee--cCCCCccceE-ECCCCCEEEEEECCCC---CccEEEEECCCC--CEEECCCC--CCCCC
Confidence 47999999876 555443 2222111111 1124556666543222 257899999887 66666543 11111
Q ss_pred cceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccc
Q 042793 337 WHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFR 416 (545)
Q Consensus 337 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~ 416 (545)
......++++|++..... + ...+|.+|+. +..+..+... ...........+++.+++..... +
T Consensus 282 -~~~~s~dg~~l~~~s~~~--g--~~~iy~~d~~--~~~~~~l~~~----~~~~~~~~~spdg~~i~~~~~~~-~----- 344 (417)
T TIGR02800 282 -EPSWSPDGKSIAFTSDRG--G--SPQIYMMDAD--GGEVRRLTFR----GGYNASPSWSPDGDLIAFVHREG-G----- 344 (417)
T ss_pred -CEEECCCCCEEEEEECCC--C--CceEEEEECC--CCCEEEeecC----CCCccCeEECCCCCEEEEEEccC-C-----
Confidence 111122455565544321 1 1368888865 4466666431 11222223333335555544322 1
Q ss_pred cCcEEEEeCCCCCCceEEee
Q 042793 417 SSDVFTMDLSEEEPCWRCVT 436 (545)
Q Consensus 417 ~~~i~~~d~~~~~~~W~~v~ 436 (545)
...++.+|+. +..++.+.
T Consensus 345 ~~~i~~~d~~--~~~~~~l~ 362 (417)
T TIGR02800 345 GFNIAVMDLD--GGGERVLT 362 (417)
T ss_pred ceEEEEEeCC--CCCeEEcc
Confidence 3579999988 55555443
No 162
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=66.65 E-value=1.3e+02 Score=29.20 Aligned_cols=123 Identities=12% Similarity=0.141 Sum_probs=60.4
Q ss_pred CcEEEEecCCC---CCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCc-eEEeec
Q 042793 362 SDTFLLDLSME---KPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPC-WRCVTG 437 (545)
Q Consensus 362 ~~~~~~d~~~~---~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~-W~~v~~ 437 (545)
.-++.|++... ..+.+.+..... .-.-.+++.+++ +|++.-| +.++.|++. ..+ +.....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~--~g~V~ai~~~~~-~lv~~~g-----------~~l~v~~l~--~~~~l~~~~~ 125 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEV--KGPVTAICSFNG-RLVVAVG-----------NKLYVYDLD--NSKTLLKKAF 125 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEE--SS-EEEEEEETT-EEEEEET-----------TEEEEEEEE--TTSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEee--cCcceEhhhhCC-EEEEeec-----------CEEEEEEcc--Ccccchhhhe
Confidence 56888987642 124554433112 222456677777 7655544 567777776 445 777765
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceE--EEcCCCCCCceEEeccCCCCCCCCCCceeEE
Q 042793 438 SGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLY--LLDPTEEKPTWRILNVPGRPPRFAWGHSTCV 515 (545)
Q Consensus 438 ~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~--~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~ 515 (545)
. ..+. ....+.+.++.|+ +|-. ...+. .|+.+ ..+-..+.. -+.++...++..
T Consensus 126 ~------------~~~~-~i~sl~~~~~~I~-vgD~------~~sv~~~~~~~~--~~~l~~va~---d~~~~~v~~~~~ 180 (321)
T PF03178_consen 126 Y------------DSPF-YITSLSVFKNYIL-VGDA------MKSVSLLRYDEE--NNKLILVAR---DYQPRWVTAAEF 180 (321)
T ss_dssp E-------------BSS-SEEEEEEETTEEE-EEES------SSSEEEEEEETT--TE-EEEEEE---ESS-BEEEEEEE
T ss_pred e------------cceE-EEEEEeccccEEE-EEEc------ccCEEEEEEEcc--CCEEEEEEe---cCCCccEEEEEE
Confidence 5 2222 3344444466554 4432 23344 55653 334555532 333445455555
Q ss_pred eCCeeEEEEcC
Q 042793 516 VGGTRTIVLGG 526 (545)
Q Consensus 516 ~~~~~l~i~GG 526 (545)
+.+.. .++++
T Consensus 181 l~d~~-~~i~~ 190 (321)
T PF03178_consen 181 LVDED-TIIVG 190 (321)
T ss_dssp E-SSS-EEEEE
T ss_pred ecCCc-EEEEE
Confidence 52334 34443
No 163
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.48 E-value=1.2e+02 Score=28.30 Aligned_cols=115 Identities=18% Similarity=0.277 Sum_probs=66.8
Q ss_pred EEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEE
Q 042793 288 LSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLL 367 (545)
Q Consensus 288 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 367 (545)
+++.++.+-||+=|.. ...+-..|+.+.+..|+.+-. .|...+++++ |+ ++|+|=+ ..-+|.+
T Consensus 16 LVV~~dskT~v~igSH----s~~~~avd~~sG~~~We~ilg-----~RiE~sa~vv-gd-fVV~GCy------~g~lYfl 78 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSH----SGIVIAVDPQSGNLIWEAILG-----VRIECSAIVV-GD-FVVLGCY------SGGLYFL 78 (354)
T ss_pred EEEecCCceEEEEecC----CceEEEecCCCCcEEeehhhC-----ceeeeeeEEE-CC-EEEEEEc------cCcEEEE
Confidence 3445554555554432 235678899999899997754 4777777777 53 4555533 2347888
Q ss_pred ecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceE
Q 042793 368 DLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWR 433 (545)
Q Consensus 368 d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~ 433 (545)
+.++...-|..+..... ...+.+-..++-|| .|-. ...+|.+|+.+..-.|+
T Consensus 79 ~~~tGs~~w~f~~~~~v----k~~a~~d~~~glIy-cgsh---------d~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 79 CVKTGSQIWNFVILETV----KVRAQCDFDGGLIY-CGSH---------DGNFYALDPKTYGCVYK 130 (354)
T ss_pred Eecchhheeeeeehhhh----ccceEEcCCCceEE-EecC---------CCcEEEecccccceEEe
Confidence 88787778887653211 11222333442444 4433 25677788774333455
No 164
>PRK00178 tolB translocation protein TolB; Provisional
Probab=64.77 E-value=1.7e+02 Score=29.82 Aligned_cols=147 Identities=15% Similarity=0.213 Sum_probs=75.0
Q ss_pred CceEEEeCCCCCCceEEeccCCCCCCccceeEE-EEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCC
Q 042793 257 NDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLS-CVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPR 335 (545)
Q Consensus 257 ~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r 335 (545)
..+|++|+.+. +-+.+. ..+.. ..... .-++++|++....++ ..++|++|+.+. ..+.+... +. .
T Consensus 223 ~~l~~~~l~~g--~~~~l~--~~~g~--~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~lt~~--~~-~ 288 (430)
T PRK00178 223 PRIFVQNLDTG--RREQIT--NFEGL--NGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASR--QLSRVTNH--PA-I 288 (430)
T ss_pred CEEEEEECCCC--CEEEcc--CCCCC--cCCeEECCCCCEEEEEEccCC---CceEEEEECCCC--CeEEcccC--CC-C
Confidence 37999999877 655553 11111 11111 124556655432222 257999999998 77776543 11 1
Q ss_pred ccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEE-EECCcEEEEEcccCCCCCCc
Q 042793 336 SWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLS-VYGGRKILMFGGLAKSGPLR 414 (545)
Q Consensus 336 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~-~~~~~~lyi~GG~~~~~~~~ 414 (545)
.......-++++|++..... + ...+|.+++. +.+++.+... ........ .-+++.|++..... +
T Consensus 289 ~~~~~~spDg~~i~f~s~~~--g--~~~iy~~d~~--~g~~~~lt~~----~~~~~~~~~Spdg~~i~~~~~~~--~--- 353 (430)
T PRK00178 289 DTEPFWGKDGRTLYFTSDRG--G--KPQIYKVNVN--GGRAERVTFV----GNYNARPRLSADGKTLVMVHRQD--G--- 353 (430)
T ss_pred cCCeEECCCCCEEEEEECCC--C--CceEEEEECC--CCCEEEeecC----CCCccceEECCCCCEEEEEEccC--C---
Confidence 11112223555666653221 1 2468888865 3467666431 11111122 22344555554321 1
Q ss_pred cccCcEEEEeCCCCCCceEEee
Q 042793 415 FRSSDVFTMDLSEEEPCWRCVT 436 (545)
Q Consensus 415 ~~~~~i~~~d~~~~~~~W~~v~ 436 (545)
...++.+|+. +.+.+.+.
T Consensus 354 --~~~l~~~dl~--tg~~~~lt 371 (430)
T PRK00178 354 --NFHVAAQDLQ--RGSVRILT 371 (430)
T ss_pred --ceEEEEEECC--CCCEEEcc
Confidence 2469999998 66666664
No 165
>PRK03629 tolB translocation protein TolB; Provisional
Probab=63.41 E-value=1.8e+02 Score=29.70 Aligned_cols=228 Identities=14% Similarity=0.152 Sum_probs=104.0
Q ss_pred ccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCC
Q 042793 255 PMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLP 334 (545)
Q Consensus 255 ~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~ 334 (545)
...++|+.|.... .=+.+.... .+ ...-.-.-++++|..+. .... ...++++|+.+. +-+.+... +..
T Consensus 177 ~~~~l~~~d~dg~--~~~~lt~~~--~~-~~~p~wSPDG~~la~~s-~~~g--~~~i~i~dl~~G--~~~~l~~~--~~~ 244 (429)
T PRK03629 177 FPYELRVSDYDGY--NQFVVHRSP--QP-LMSPAWSPDGSKLAYVT-FESG--RSALVIQTLANG--AVRQVASF--PRH 244 (429)
T ss_pred cceeEEEEcCCCC--CCEEeecCC--Cc-eeeeEEcCCCCEEEEEE-ecCC--CcEEEEEECCCC--CeEEccCC--CCC
Confidence 3558999988654 222222111 11 11111123454554432 1111 246899999887 55555543 111
Q ss_pred CccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEEC-CcEEEEEcccCCCCCC
Q 042793 335 RSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYG-GRKILMFGGLAKSGPL 413 (545)
Q Consensus 335 r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~lyi~GG~~~~~~~ 413 (545)
.......-+|++|++..... + ..++|.+|++. .+...+... +.. ........ ++.|+..... .+
T Consensus 245 -~~~~~~SPDG~~La~~~~~~--g--~~~I~~~d~~t--g~~~~lt~~--~~~--~~~~~wSPDG~~I~f~s~~--~g-- 309 (429)
T PRK03629 245 -NGAPAFSPDGSKLAFALSKT--G--SLNLYVMDLAS--GQIRQVTDG--RSN--NTEPTWFPDSQNLAYTSDQ--AG-- 309 (429)
T ss_pred -cCCeEECCCCCEEEEEEcCC--C--CcEEEEEECCC--CCEEEccCC--CCC--cCceEECCCCCEEEEEeCC--CC--
Confidence 11122233565666553321 1 13589999653 356665431 111 11222232 3244433221 11
Q ss_pred ccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCC
Q 042793 414 RFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKP 493 (545)
Q Consensus 414 ~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~ 493 (545)
..++|.+|+. +.+-+++... ...... .....+++.+++.+...+ ..+++.+|++ +.
T Consensus 310 ---~~~Iy~~d~~--~g~~~~lt~~-------------~~~~~~-~~~SpDG~~Ia~~~~~~g---~~~I~~~dl~--~g 365 (429)
T PRK03629 310 ---RPQVYKVNIN--GGAPQRITWE-------------GSQNQD-ADVSSDGKFMVMVSSNGG---QQHIAKQDLA--TG 365 (429)
T ss_pred ---CceEEEEECC--CCCeEEeecC-------------CCCccC-EEECCCCCEEEEEEccCC---CceEEEEECC--CC
Confidence 3589999987 5555555322 111111 222235555554433211 2469999996 45
Q ss_pred ceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeee
Q 042793 494 TWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSL 542 (545)
Q Consensus 494 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l 542 (545)
.++.+..... ........+++.+++.+.+... ..+++.++
T Consensus 366 ~~~~Lt~~~~------~~~p~~SpDG~~i~~~s~~~~~---~~l~~~~~ 405 (429)
T PRK03629 366 GVQVLTDTFL------DETPSIAPNGTMVIYSSSQGMG---SVLNLVST 405 (429)
T ss_pred CeEEeCCCCC------CCCceECCCCCEEEEEEcCCCc---eEEEEEEC
Confidence 6777642110 1112223466666666554322 33555554
No 166
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=59.79 E-value=39 Score=28.57 Aligned_cols=76 Identities=7% Similarity=-0.053 Sum_probs=45.0
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEE-EEEEEeecCCCCEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNR-LRLSPIYGDDETITHV 80 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~-~~~~pi~d~~g~~~~~ 80 (545)
++.+|+++-+.+.-..+. .+++..+.+.++..+|-.....=....+.|+.|+++ ..+=-+.|++|...+-
T Consensus 68 ~~w~el~~lPsr~sae~~---------~r~er~~lL~~v~~qG~~~~y~GiRiss~Grrf~ie~a~vW~l~D~~g~~~Gq 138 (148)
T PF08670_consen 68 TTWDELVGLPSRLSAEEP---------ERKERQSLLAQVMQQGYIDNYSGIRISSTGRRFRIERATVWNLIDEDGNYCGQ 138 (148)
T ss_pred CCHHHHhcCcHhhccChh---------hHHHHHHHHHHHHHhCCccCCCeEEEcCCCCeEEEeceEEEEEEcCCCCEEEE
Confidence 355666666655333322 444555555555555532222222357999999986 4566688999988776
Q ss_pred EEEeee
Q 042793 81 IGIQFF 86 (545)
Q Consensus 81 i~~~~D 86 (545)
-+++.+
T Consensus 139 Aa~F~~ 144 (148)
T PF08670_consen 139 AAMFSN 144 (148)
T ss_pred EEEEee
Confidence 666654
No 167
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=59.07 E-value=8.9 Score=40.21 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=59.0
Q ss_pred CcccccccCCC-CcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCC-CCEEE
Q 042793 2 RDLGAETNDGI-RFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDD-ETITH 79 (545)
Q Consensus 2 ~~~~~~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~-g~~~~ 79 (545)
+.++|++|+.| .|++. .+.....+.+.+.+..|+...+.++...|+|-..|++...+.|.+.. ++-.+
T Consensus 299 y~PeeLvGrS~Ye~~Ha----------~Ds~~v~KSh~dL~~KGQv~TgyYR~lak~GGyvWlQTqATVi~~tkn~q~q~ 368 (768)
T KOG3558|consen 299 YEPEELVGRSCYEFVHA----------LDSDRVRKSHHDLLTKGQVVTGYYRLLAKNGGYVWLQTQATVIYNTKNPQEQN 368 (768)
T ss_pred CCHHHhhchhHHHhhhH----------hhhhHHHHHHHHHHhcCccchhHHHHHHhcCCeEEEEeeeEEEecCCCCCcce
Confidence 57888899885 34443 35556667788888899988888888999999999999998888644 34456
Q ss_pred EEEEeeeeeec
Q 042793 80 VIGIQFFTEAN 90 (545)
Q Consensus 80 ~i~~~~Dite~ 90 (545)
+|++.-=|+..
T Consensus 369 IicVnYVlS~~ 379 (768)
T KOG3558|consen 369 IICVNYVLSNI 379 (768)
T ss_pred EEEEEeeeccc
Confidence 66776666644
No 168
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=56.73 E-value=1.2e+02 Score=30.37 Aligned_cols=139 Identities=20% Similarity=0.252 Sum_probs=63.6
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCCCccceEEEE--cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCC
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL--DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPP 386 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~ 386 (545)
+.+.+.|..+.. .-.+++.+ ...|..... ++..+|+.+. + +.+.++|+.+.+ .-.++..
T Consensus 16 ~~v~viD~~t~~-~~~~i~~~-----~~~h~~~~~s~Dgr~~yv~~r-d------g~vsviD~~~~~-~v~~i~~----- 76 (369)
T PF02239_consen 16 GSVAVIDGATNK-VVARIPTG-----GAPHAGLKFSPDGRYLYVANR-D------GTVSVIDLATGK-VVATIKV----- 76 (369)
T ss_dssp TEEEEEETTT-S-EEEEEE-S-----TTEEEEEE-TT-SSEEEEEET-T------SEEEEEETTSSS-EEEEEE------
T ss_pred CEEEEEECCCCe-EEEEEcCC-----CCceeEEEecCCCCEEEEEcC-C------CeEEEEECCccc-EEEEEec-----
Confidence 578899988861 23344432 122544433 4668999853 1 358899965432 2223332
Q ss_pred CCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCce-EEeecCCCCCCCCCCCCCCCCCcceEEEE-ecC
Q 042793 387 SRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCW-RCVTGSGMPGAGNPGGIAPPPRLDHVAVS-LPG 464 (545)
Q Consensus 387 ~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W-~~v~~~~~~~~~~~~g~~p~~r~~~~~~~-~~~ 464 (545)
+....+++.-.+++.++++... .+.+.++|.+ +.+= ..++..+++ ...+.+|. +++. ...
T Consensus 77 G~~~~~i~~s~DG~~~~v~n~~--------~~~v~v~D~~--tle~v~~I~~~~~~------~~~~~~Rv--~aIv~s~~ 138 (369)
T PF02239_consen 77 GGNPRGIAVSPDGKYVYVANYE--------PGTVSVIDAE--TLEPVKTIPTGGMP------VDGPESRV--AAIVASPG 138 (369)
T ss_dssp SSEEEEEEE--TTTEEEEEEEE--------TTEEEEEETT--T--EEEEEE--EE-------TTTS---E--EEEEE-SS
T ss_pred CCCcceEEEcCCCCEEEEEecC--------CCceeEeccc--cccceeeccccccc------ccccCCCc--eeEEecCC
Confidence 2233444443333544444432 4778889977 4332 223221100 00133333 2332 234
Q ss_pred CEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 465 GRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 465 ~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
...||+-- ...+++|..|.+
T Consensus 139 ~~~fVv~l-----kd~~~I~vVdy~ 158 (369)
T PF02239_consen 139 RPEFVVNL-----KDTGEIWVVDYS 158 (369)
T ss_dssp SSEEEEEE-----TTTTEEEEEETT
T ss_pred CCEEEEEE-----ccCCeEEEEEec
Confidence 45555532 235789999875
No 169
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=56.10 E-value=2.2e+02 Score=28.37 Aligned_cols=99 Identities=8% Similarity=0.071 Sum_probs=49.9
Q ss_pred ceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecC---CCCCCCC--CCcEEEEE
Q 042793 322 TWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPV---TWTPPSR--LGHTLSVY 396 (545)
Q Consensus 322 ~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~---~~~p~~r--~~~~~~~~ 396 (545)
.|+.+..+ ..++ --.+.++ +++|++.- ...++.++.+. .-+++.. ..+..+. ...-.+..
T Consensus 191 ~Wt~l~~~---~~~~-~DIi~~k-GkfYAvD~-------~G~l~~i~~~l---~i~~v~~~i~~~~~~g~~~~~~yLVEs 255 (373)
T PLN03215 191 VLKALKQM---GYHF-SDIIVHK-GQTYALDS-------IGIVYWINSDL---EFSRFGTSLDENITDGCWTGDRRFVEC 255 (373)
T ss_pred eeeEccCC---Ccee-eEEEEEC-CEEEEEcC-------CCeEEEEecCC---ceeeecceecccccCCcccCceeEEEE
Confidence 99999743 2232 2344554 49999832 13466666321 1122221 0011111 11224445
Q ss_pred CCcEEEEEcccCCCCCC----------ccccCcEEEEeCCCCCCceEEeecC
Q 042793 397 GGRKILMFGGLAKSGPL----------RFRSSDVFTMDLSEEEPCWRCVTGS 438 (545)
Q Consensus 397 ~~~~lyi~GG~~~~~~~----------~~~~~~i~~~d~~~~~~~W~~v~~~ 438 (545)
.+ +|+++......... ....-+||.+|.+ ..+|.++..+
T Consensus 256 ~G-dLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~--~~~WveV~sL 304 (373)
T PLN03215 256 CG-ELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDE--LAKWMEVKTL 304 (373)
T ss_pred CC-EEEEEEEEccCcccccccccccccceeEEEEEEEcCC--CCcEEEeccc
Confidence 55 79988775321110 0112356667766 7899999877
No 170
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=55.02 E-value=1.7e+02 Score=26.64 Aligned_cols=63 Identities=13% Similarity=0.220 Sum_probs=30.4
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
+.+++.|+.+ ..+.+||..+...... +. . ..... ..+....++..+++++.+ ..+.+||..+.
T Consensus 21 ~~~l~~~~~~------g~i~i~~~~~~~~~~~-~~--~-~~~~i-~~~~~~~~~~~l~~~~~~-----~~i~i~~~~~~ 83 (289)
T cd00200 21 GKLLATGSGD------GTIKVWDLETGELLRT-LK--G-HTGPV-RDVAASADGTYLASGSSD-----KTIRLWDLETG 83 (289)
T ss_pred CCEEEEeecC------cEEEEEEeeCCCcEEE-Ee--c-CCcce-eEEEECCCCCEEEEEcCC-----CeEEEEEcCcc
Confidence 3566666542 2677888766511111 11 1 11111 122222333455666642 46888988875
No 171
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.84 E-value=1.7e+02 Score=29.07 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=28.1
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCC
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSME 372 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 372 (545)
+.+-++|++|. . .+... ..++.--+++..-++.-||++|... ..+++||+...
T Consensus 216 nkiki~dlet~--~--~vssy--~a~~~~wSC~wDlde~h~IYaGl~n-----G~VlvyD~R~~ 268 (463)
T KOG1645|consen 216 NKIKIMDLETS--C--VVSSY--IAYNQIWSCCWDLDERHVIYAGLQN-----GMVLVYDMRQP 268 (463)
T ss_pred ceEEEEecccc--e--eeehe--eccCCceeeeeccCCcceeEEeccC-----ceEEEEEccCC
Confidence 45667777776 2 12111 1112222333333446788888643 35899998643
No 172
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=53.79 E-value=13 Score=39.28 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=34.2
Q ss_pred HHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeeeecccC
Q 042793 37 IRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEANVDL 93 (545)
Q Consensus 37 ~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite~~~~ 93 (545)
+.+.+..+.+...+. ...+|.. +.+...|+.+ +|.+.+++.+.+|+|+.++.
T Consensus 278 ~~~~~~~~~~~~~~~--~~~~g~~--~~~~~~pi~~-~g~~~g~v~~~rDite~~~l 329 (542)
T PRK11086 278 LKEVLRTGTPRRDEE--ININGRL--LLTNTVPVRV-NGEIIGAIATFRDKTEVRQL 329 (542)
T ss_pred HHHHHhcCCCccceE--EEECCEE--EEEEEEEEeE-CCEEEEEEEEEEEchHHHHH
Confidence 344455554433221 2235553 4556789998 88999999999999998754
No 173
>PRK04043 tolB translocation protein TolB; Provisional
Probab=53.45 E-value=2.6e+02 Score=28.45 Aligned_cols=187 Identities=12% Similarity=0.129 Sum_probs=96.4
Q ss_pred ceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCcc
Q 042793 258 DTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSW 337 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~ 337 (545)
++|++|+.+. +=+++. ..+ .........-++++|++.-...+ ..++|.+|..+. .++++... +. ...
T Consensus 214 ~Iyv~dl~tg--~~~~lt--~~~-g~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g--~~~~LT~~--~~-~d~ 280 (419)
T PRK04043 214 TLYKYNLYTG--KKEKIA--SSQ-GMLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTK--TLTQITNY--PG-IDV 280 (419)
T ss_pred EEEEEECCCC--cEEEEe--cCC-CcEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCC--cEEEcccC--CC-ccC
Confidence 8999999876 545443 111 11111112235666766543322 358999999988 88888754 21 111
Q ss_pred ceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCcccc
Q 042793 338 HSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRS 417 (545)
Q Consensus 338 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~ 417 (545)
.....-+|++||+..... -..++|++|+.. ...+++... +.... ...-+++.|.+........ .....
T Consensus 281 ~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~~--g~~~rlt~~----g~~~~-~~SPDG~~Ia~~~~~~~~~-~~~~~ 348 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRL----GYPNIFMKKLNS--GSVEQVVFH----GKNNS-SVSTYKNYIVYSSRETNNE-FGKNT 348 (419)
T ss_pred ccEECCCCCEEEEEECCC----CCceEEEEECCC--CCeEeCccC----CCcCc-eECCCCCEEEEEEcCCCcc-cCCCC
Confidence 112233566787765432 125799999764 466666532 11122 2222343454443322111 00013
Q ss_pred CcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 418 SDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 418 ~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
.+++.+|++ +..++.+... ......... .+++.+++-... .....++.++++
T Consensus 349 ~~I~v~d~~--~g~~~~LT~~--------------~~~~~p~~S-PDG~~I~f~~~~---~~~~~L~~~~l~ 400 (419)
T PRK04043 349 FNLYLISTN--SDYIRRLTAN--------------GVNQFPRFS-SDGGSIMFIKYL---GNQSALGIIRLN 400 (419)
T ss_pred cEEEEEECC--CCCeEECCCC--------------CCcCCeEEC-CCCCEEEEEEcc---CCcEEEEEEecC
Confidence 689999998 6677777533 111112222 356544443322 123568888886
No 174
>PRK04922 tolB translocation protein TolB; Provisional
Probab=53.15 E-value=2.7e+02 Score=28.45 Aligned_cols=183 Identities=17% Similarity=0.198 Sum_probs=89.7
Q ss_pred CceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCc
Q 042793 257 NDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRS 336 (545)
Q Consensus 257 ~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~ 336 (545)
..++++|+.+. +-+.+. ..+..-. .....-++++|++....++ ..+++++|+.+. .-+.+... .. ..
T Consensus 228 ~~l~~~dl~~g--~~~~l~--~~~g~~~-~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g--~~~~lt~~--~~-~~ 294 (433)
T PRK04922 228 SAIYVQDLATG--QRELVA--SFRGING-APSFSPDGRRLALTLSRDG---NPEIYVMDLGSR--QLTRLTNH--FG-ID 294 (433)
T ss_pred cEEEEEECCCC--CEEEec--cCCCCcc-CceECCCCCEEEEEEeCCC---CceEEEEECCCC--CeEECccC--CC-Cc
Confidence 47999999876 555543 2221111 1111234556665433222 247999999988 66665532 11 11
Q ss_pred cceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEE-CCcEEEEEcccCCCCCCcc
Q 042793 337 WHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVY-GGRKILMFGGLAKSGPLRF 415 (545)
Q Consensus 337 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~lyi~GG~~~~~~~~~ 415 (545)
......-+|.++++.... .+ ..++|.+|+.. .+.+.+... .......... +++.|++..+. ++
T Consensus 295 ~~~~~spDG~~l~f~sd~--~g--~~~iy~~dl~~--g~~~~lt~~----g~~~~~~~~SpDG~~Ia~~~~~--~~---- 358 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDR--GG--RPQIYRVAASG--GSAERLTFQ----GNYNARASVSPDGKKIAMVHGS--GG---- 358 (433)
T ss_pred cceEECCCCCEEEEEECC--CC--CceEEEEECCC--CCeEEeecC----CCCccCEEECCCCCEEEEEECC--CC----
Confidence 111222245455554332 11 14688888653 466666431 1112222222 34456555432 11
Q ss_pred ccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 416 RSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 416 ~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
...++.+|+. +.+.+.+... + ....... ..+++.+++..... ....++.++++
T Consensus 359 -~~~I~v~d~~--~g~~~~Lt~~------------~--~~~~p~~-spdG~~i~~~s~~~---g~~~L~~~~~~ 411 (433)
T PRK04922 359 -QYRIAVMDLS--TGSVRTLTPG------------S--LDESPSF-APNGSMVLYATREG---GRGVLAAVSTD 411 (433)
T ss_pred -ceeEEEEECC--CCCeEECCCC------------C--CCCCceE-CCCCCEEEEEEecC---CceEEEEEECC
Confidence 2478999987 5566655422 1 1111122 23666655544321 13568888885
No 175
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=52.35 E-value=1.4e+02 Score=31.06 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=40.1
Q ss_pred CCCceeeEEE--CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCc
Q 042793 230 SRCNFSACAV--GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQG 306 (545)
Q Consensus 230 ~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~ 306 (545)
|+++.-++.. .-.||+.|-. +++|++|+... +|-..- ....+-.. ++.+ .-+.|+.+||.+
T Consensus 133 P~~GRDm~y~~~scDly~~gsg-------~evYRlNLEqG--rfL~P~--~~~~~~lN--~v~in~~hgLla~Gt~~--- 196 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGSG-------SEVYRLNLEQG--RFLNPF--ETDSGELN--VVSINEEHGLLACGTED--- 196 (703)
T ss_pred CcCCccccccCCCccEEEeecC-------cceEEEEcccc--cccccc--ccccccce--eeeecCccceEEecccC---
Confidence 3444444433 3457776632 38999999987 775311 11111111 1122 124588999854
Q ss_pred ccCcEEEEecCCC
Q 042793 307 LLNDVFVLDLDAK 319 (545)
Q Consensus 307 ~~~~~~~yd~~t~ 319 (545)
+.|+.+|+.+.
T Consensus 197 --g~VEfwDpR~k 207 (703)
T KOG2321|consen 197 --GVVEFWDPRDK 207 (703)
T ss_pred --ceEEEecchhh
Confidence 35888888766
No 176
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=52.01 E-value=1.6e+02 Score=30.72 Aligned_cols=72 Identities=15% Similarity=0.290 Sum_probs=40.5
Q ss_pred CCCCcEEEEEC-CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCC
Q 042793 387 SRLGHTLSVYG-GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGG 465 (545)
Q Consensus 387 ~r~~~~~~~~~-~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~ 465 (545)
|+.+..++... ...||+.|- ..++|+||++ ...|-..-.. -.+-..++.+.- -.
T Consensus 133 P~~GRDm~y~~~scDly~~gs----------g~evYRlNLE--qGrfL~P~~~------------~~~~lN~v~in~-~h 187 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGS----------GSEVYRLNLE--QGRFLNPFET------------DSGELNVVSINE-EH 187 (703)
T ss_pred CcCCccccccCCCccEEEeec----------CcceEEEEcc--cccccccccc------------ccccceeeeecC-cc
Confidence 34444443322 336887664 3899999999 7677432211 111122223322 34
Q ss_pred EEEEEcCcCCCCCCCCceEEEcCC
Q 042793 466 RILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 466 ~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
.|+.+||.+ +.|..+|+.
T Consensus 188 gLla~Gt~~------g~VEfwDpR 205 (703)
T KOG2321|consen 188 GLLACGTED------GVVEFWDPR 205 (703)
T ss_pred ceEEecccC------ceEEEecch
Confidence 588888854 567888885
No 177
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=51.27 E-value=2.4e+02 Score=27.45 Aligned_cols=240 Identities=14% Similarity=0.140 Sum_probs=107.5
Q ss_pred cCceEEEeCCCCCCceEEec-cCCCCCCccceeEEEE--cCCEEEEEcCCCCCcccCcEEEE--ecCCCCCceEeccCCC
Q 042793 256 MNDTFVLDLNSSNPEWQHVH-VSSPPPGRWGHTLSCV--NGSHLVVFGGCGRQGLLNDVFVL--DLDAKPPTWREISGLA 330 (545)
Q Consensus 256 ~~~~~~~d~~t~~~~W~~~~-~~~~~~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~y--d~~t~~~~W~~~~~~~ 330 (545)
+.-++++++.+...+-+.+. ...+..|-+ ..+ +++.+|++..-+.. ..+..| |++.+ +-+.+...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~npty----l~~~~~~~~LY~v~~~~~~---ggvaay~iD~~~G--~Lt~ln~~- 84 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTY----LAVNPDQRHLYVVNEPGEE---GGVAAYRIDPDDG--RLTFLNRQ- 84 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCce----EEECCCCCEEEEEEecCCc---CcEEEEEEcCCCC--eEEEeecc-
Confidence 45788887775422332222 112333322 233 33468887654332 344444 55445 66655432
Q ss_pred CCCCCccceEEEEcCC-EEEEEcCCCCCCCccCcEEEEecCCCCCceEEecC----CCCCCCC----CCcEEEEECCc-E
Q 042793 331 PPLPRSWHSSCTLDGT-KLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPV----TWTPPSR----LGHTLSVYGGR-K 400 (545)
Q Consensus 331 ~~~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~----~~~p~~r----~~~~~~~~~~~-~ 400 (545)
+.+-...+-+.++.+ .+.+..-+. .+.+-+|-+..+..-|..+.. +..|.+| ..|.+..-.++ .
T Consensus 85 -~~~g~~p~yvsvd~~g~~vf~AnY~-----~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~ 158 (346)
T COG2706 85 -TLPGSPPCYVSVDEDGRFVFVANYH-----SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY 158 (346)
T ss_pred -ccCCCCCeEEEECCCCCEEEEEEcc-----CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCE
Confidence 111111122333322 233322221 134666666444444443221 2223334 23444443333 3
Q ss_pred EEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCC
Q 042793 401 ILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSA 480 (545)
Q Consensus 401 lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~ 480 (545)
|++..-. .+.++.|+.+ ...-+...... ..|..--.|-.+--.+.-.|++.--+ ..
T Consensus 159 l~v~DLG---------~Dri~~y~~~--dg~L~~~~~~~---------v~~G~GPRHi~FHpn~k~aY~v~EL~----st 214 (346)
T COG2706 159 LVVPDLG---------TDRIFLYDLD--DGKLTPADPAE---------VKPGAGPRHIVFHPNGKYAYLVNELN----ST 214 (346)
T ss_pred EEEeecC---------CceEEEEEcc--cCccccccccc---------cCCCCCcceEEEcCCCcEEEEEeccC----CE
Confidence 4433211 5788899887 44444333221 01111123433333233468885533 12
Q ss_pred CceEEEcCCCCCCceEEeccCCCCCC---CCCCceeEEeC--CeeEEEEcCCCCcccccccceeeeec
Q 042793 481 TQLYLLDPTEEKPTWRILNVPGRPPR---FAWGHSTCVVG--GTRTIVLGGQTGEEWMLSELHELSLV 543 (545)
Q Consensus 481 ~~v~~~d~~~~~~~W~~~~~~~~~p~---~r~~~~~~~~~--~~~l~i~GG~~~~~~~~~~~~~l~l~ 543 (545)
-++|.||.. ..+.+.++....+|. .-...+++.+. +..||+-- . ..+.|++|.++
T Consensus 215 V~v~~y~~~--~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN----R--g~dsI~~f~V~ 274 (346)
T COG2706 215 VDVLEYNPA--VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN----R--GHDSIAVFSVD 274 (346)
T ss_pred EEEEEEcCC--CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec----C--CCCeEEEEEEc
Confidence 345666653 567888877665554 22334444443 44455521 1 13566666654
No 178
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=51.25 E-value=2.7e+02 Score=27.87 Aligned_cols=150 Identities=14% Similarity=0.187 Sum_probs=59.0
Q ss_pred cEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCC
Q 042793 363 DTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPG 442 (545)
Q Consensus 363 ~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~ 442 (545)
-+|..+.+ .....++.. ..+.-..+|-.-..++..|+..+...+ +. ..-|..+|+.+...+ .+..+
T Consensus 217 RiW~i~~d--g~~~~~v~~-~~~~e~~gHEfw~~DG~~i~y~~~~~~-~~----~~~i~~~d~~t~~~~--~~~~~---- 282 (386)
T PF14583_consen 217 RIWTINTD--GSNVKKVHR-RMEGESVGHEFWVPDGSTIWYDSYTPG-GQ----DFWIAGYDPDTGERR--RLMEM---- 282 (386)
T ss_dssp SEEEEETT--S---EESS----TTEEEEEEEE-TTSS-EEEEEEETT-T------EEEEEE-TTT--EE--EEEEE----
T ss_pred EEEEEEcC--CCcceeeec-CCCCcccccccccCCCCEEEEEeecCC-CC----ceEEEeeCCCCCCce--EEEeC----
Confidence 57777743 223334432 133334555554445545555444332 21 245777888843333 34333
Q ss_pred CCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCC--------CCC--ceEEEcCCCCC--------CceEEeccCCCC
Q 042793 443 AGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLH--------SAT--QLYLLDPTEEK--------PTWRILNVPGRP 504 (545)
Q Consensus 443 ~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~--------~~~--~v~~~d~~~~~--------~~W~~~~~~~~~ 504 (545)
|.+.|..... +++++|--|.+.+.. ..+ -+|.++++... ..|..+...-+.
T Consensus 283 ----------p~~~H~~ss~-Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~ 351 (386)
T PF14583_consen 283 ----------PWCSHFMSSP-DGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQV 351 (386)
T ss_dssp -----------SEEEEEE-T-TSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSST
T ss_pred ----------CceeeeEEcC-CCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCcc
Confidence 4567777765 888887656542211 112 35567775321 124443321111
Q ss_pred CCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeecc
Q 042793 505 PRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 505 p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
..-|.... .+++-+||. .+..+ ...||..+|..
T Consensus 352 ---~hPhp~FS-PDgk~VlF~-Sd~~G--~~~vY~v~i~~ 384 (386)
T PF14583_consen 352 ---THPHPSFS-PDGKWVLFR-SDMEG--PPAVYLVEIPD 384 (386)
T ss_dssp ---T----EE--TTSSEEEEE-E-TTS--S-EEEEEE--C
T ss_pred ---CCCCCccC-CCCCEEEEE-CCCCC--CccEEEEeCcc
Confidence 11233333 366666665 23333 36788877754
No 179
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=51.23 E-value=2.3e+02 Score=28.42 Aligned_cols=165 Identities=18% Similarity=0.234 Sum_probs=0.0
Q ss_pred CCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecC
Q 042793 302 CGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPV 381 (545)
Q Consensus 302 ~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 381 (545)
...+...|++|++|-+-+ .--++..+.+-...+ ++-+.|+..|+.-=...+. +++.|++.. +=-++-
T Consensus 399 ~~~de~~N~vYilDe~ln--vvGkltGl~~gERIY---AvRf~gdv~yiVTfrqtDP-----lfviDlsNP--enPkvl- 465 (603)
T COG4880 399 TSEDEPVNAVYILDENLN--VVGKLTGLAPGERIY---AVRFVGDVLYIVTFRQTDP-----LFVIDLSNP--ENPKVL- 465 (603)
T ss_pred ccCCCccceeEEEcCCCc--EEEEEeccCCCceEE---EEEEeCceEEEEEEeccCc-----eEEEEcCCC--CCCcee-
Q ss_pred CCCCCCCCCcEEEEECCcEEEEEcccCCCCCCc-------------------------cccCcEEEEeCCCCCCceEEee
Q 042793 382 TWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLR-------------------------FRSSDVFTMDLSEEEPCWRCVT 436 (545)
Q Consensus 382 ~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~-------------------------~~~~~i~~~d~~~~~~~W~~v~ 436 (545)
+.+..|.+..-...++++.++=+|-..+.-... .+.-.-+.||++ ..-.--.+
T Consensus 466 GeLKIPGfS~YLHpigen~~lGvG~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~--~~ifFlPa 543 (603)
T COG4880 466 GELKIPGFSEYLHPIGENRLLGVGAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPE--AEIFFLPA 543 (603)
T ss_pred EEEecCCchhhccccCCCcEEEeecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCc--ccEEEecc
Q ss_pred cCC---------CCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEe
Q 042793 437 GSG---------MPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 437 ~~~---------~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~ 498 (545)
..+ +.-....+...+..| +.-+ ++.+|++|| +++|.|| .+.|+.+
T Consensus 544 y~~gyif~iedg~kl~k~~e~k~na~R----A~fi-~dylY~vg~--------~ev~~ld----enswe~V 597 (603)
T COG4880 544 YLGGYIFFIEDGSKLRKRAERKLNADR----AFFI-KDYLYLVGG--------NEVWKLD----ENSWEVV 597 (603)
T ss_pred cCccEEEEEecCceeeehhhhccccee----eEEe-cceEEEecc--------ceeEEec----cchHhhh
No 180
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=50.99 E-value=1.7e+02 Score=25.70 Aligned_cols=70 Identities=11% Similarity=0.334 Sum_probs=40.7
Q ss_pred CCccCceEEEeCCCCCCceEEeccCCC---CCCccceeEEEEcCCEE-EEEcCCCCC-cccCcEEEEecCCCCCceEecc
Q 042793 253 MQPMNDTFVLDLNSSNPEWQHVHVSSP---PPGRWGHTLSCVNGSHL-VVFGGCGRQ-GLLNDVFVLDLDAKPPTWREIS 327 (545)
Q Consensus 253 ~~~~~~~~~~d~~t~~~~W~~~~~~~~---~~~r~~~~~~~~~~~~i-yv~GG~~~~-~~~~~~~~yd~~t~~~~W~~~~ 327 (545)
.....++|++|..++ .|..+...+. ..|.+ . .=+++..| +++|...+. .--..+|+|++.|+ .-+.+.
T Consensus 84 eEgiGkIYIkn~~~~--~~~~L~i~~~~~k~sPK~--i-~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg--~~~~ly 156 (200)
T PF15525_consen 84 EEGIGKIYIKNLNNN--NWWSLQIDQNEEKYSPKY--I-EWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTG--NLTELY 156 (200)
T ss_pred cccceeEEEEecCCC--ceEEEEecCcccccCCce--e-EEecCCcEEEEEccccceEccCCeEEEEEccCC--ceeEee
Confidence 345678999999887 7766543332 23442 1 12444445 445532221 12357999999999 666665
Q ss_pred CC
Q 042793 328 GL 329 (545)
Q Consensus 328 ~~ 329 (545)
..
T Consensus 157 ~~ 158 (200)
T PF15525_consen 157 EW 158 (200)
T ss_pred ec
Confidence 43
No 181
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=49.90 E-value=2.9e+02 Score=27.89 Aligned_cols=160 Identities=14% Similarity=0.159 Sum_probs=74.5
Q ss_pred cCcEEEEecCCCCCceEeccCCCCCCCCccce-EEEEcCCEEEEEcCCCCCCC-----ccCcEEEEecCCCCCceEEecC
Q 042793 308 LNDVFVLDLDAKPPTWREISGLAPPLPRSWHS-SCTLDGTKLIVSGGCADSGV-----LLSDTFLLDLSMEKPVWREIPV 381 (545)
Q Consensus 308 ~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~-~~~~~~~~iyv~GG~~~~~~-----~~~~~~~~d~~~~~~~W~~~~~ 381 (545)
...+.++|+.++ .. ++. .......+ .+...+++.+++........ ....++...+.+....=..+-.
T Consensus 149 ~~~l~v~Dl~tg--~~--l~d---~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe 221 (414)
T PF02897_consen 149 WYTLRVFDLETG--KF--LPD---GIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFE 221 (414)
T ss_dssp EEEEEEEETTTT--EE--EEE---EEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC
T ss_pred eEEEEEEECCCC--cC--cCC---cccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEe
Confidence 346899999998 33 222 11222222 33334434444443333221 2457888886544222122321
Q ss_pred CCCCCCCC-CcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCC---CCceEEeecCCCCCCCCCCCCCCCCCcce
Q 042793 382 TWTPPSRL-GHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEE---EPCWRCVTGSGMPGAGNPGGIAPPPRLDH 457 (545)
Q Consensus 382 ~~~p~~r~-~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~---~~~W~~v~~~~~~~~~~~~g~~p~~r~~~ 457 (545)
.+.... ...+..-.+++.+++.-..... .+++|.++.... ...|..+... .. ...
T Consensus 222 --~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-----~s~v~~~d~~~~~~~~~~~~~l~~~-------------~~-~~~ 280 (414)
T PF02897_consen 222 --EPDEPFWFVSVSRSKDGRYLFISSSSGTS-----ESEVYLLDLDDGGSPDAKPKLLSPR-------------ED-GVE 280 (414)
T ss_dssp ---TTCTTSEEEEEE-TTSSEEEEEEESSSS-----EEEEEEEECCCTTTSS-SEEEEEES-------------SS-S-E
T ss_pred --ecCCCcEEEEEEecCcccEEEEEEEcccc-----CCeEEEEeccccCCCcCCcEEEeCC-------------CC-ceE
Confidence 111222 2233233333433332222211 278999999832 3478888532 11 222
Q ss_pred EEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCC-ceEEe
Q 042793 458 VAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKP-TWRIL 498 (545)
Q Consensus 458 ~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~-~W~~~ 498 (545)
..+...++.+|+.-..+ .....++.+++..... .|..+
T Consensus 281 ~~v~~~~~~~yi~Tn~~---a~~~~l~~~~l~~~~~~~~~~~ 319 (414)
T PF02897_consen 281 YYVDHHGDRLYILTNDD---APNGRLVAVDLADPSPAEWWTV 319 (414)
T ss_dssp EEEEEETTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEE
T ss_pred EEEEccCCEEEEeeCCC---CCCcEEEEecccccccccceeE
Confidence 23333488899886532 2346789999874221 46643
No 182
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=49.12 E-value=2.3e+02 Score=26.60 Aligned_cols=104 Identities=23% Similarity=0.341 Sum_probs=61.6
Q ss_pred cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEE
Q 042793 344 DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTM 423 (545)
Q Consensus 344 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~ 423 (545)
.++.+|..-|... -+.+..+|+.+. +-..... +|..-.+=+++.+++ +||.+--. ....++|
T Consensus 54 ~~g~LyESTG~yG----~S~l~~~d~~tg--~~~~~~~--l~~~~FgEGit~~~d-~l~qLTWk---------~~~~f~y 115 (264)
T PF05096_consen 54 DDGTLYESTGLYG----QSSLRKVDLETG--KVLQSVP--LPPRYFGEGITILGD-KLYQLTWK---------EGTGFVY 115 (264)
T ss_dssp ETTEEEEEECSTT----EEEEEEEETTTS--SEEEEEE---TTT--EEEEEEETT-EEEEEESS---------SSEEEEE
T ss_pred CCCEEEEeCCCCC----cEEEEEEECCCC--cEEEEEE--CCccccceeEEEECC-EEEEEEec---------CCeEEEE
Confidence 5668888877533 246889997644 4433332 666667778888887 99988553 4788999
Q ss_pred eCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 424 DLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 424 d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
|+. + .+.+... +.+.-+- ..+..+..+++--| ++.++.+||+
T Consensus 116 d~~--t--l~~~~~~------------~y~~EGW-GLt~dg~~Li~SDG-------S~~L~~~dP~ 157 (264)
T PF05096_consen 116 DPN--T--LKKIGTF------------PYPGEGW-GLTSDGKRLIMSDG-------SSRLYFLDPE 157 (264)
T ss_dssp ETT--T--TEEEEEE------------E-SSS---EEEECSSCEEEE-S-------SSEEEEE-TT
T ss_pred ccc--c--ceEEEEE------------ecCCcce-EEEcCCCEEEEECC-------ccceEEECCc
Confidence 987 4 4555444 2222222 23343566777666 4678888875
No 183
>PTZ00421 coronin; Provisional
Probab=48.05 E-value=3.5e+02 Score=28.30 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=30.6
Q ss_pred EEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 347 KLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 347 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.+++.||.+ ..+.++|+.... .-..+.. ... .-.++....++.+++.|+.+ ..+..||+.
T Consensus 139 ~iLaSgs~D------gtVrIWDl~tg~-~~~~l~~--h~~--~V~sla~spdG~lLatgs~D---------g~IrIwD~r 198 (493)
T PTZ00421 139 NVLASAGAD------MVVNVWDVERGK-AVEVIKC--HSD--QITSLEWNLDGSLLCTTSKD---------KKLNIIDPR 198 (493)
T ss_pred CEEEEEeCC------CEEEEEECCCCe-EEEEEcC--CCC--ceEEEEEECCCCEEEEecCC---------CEEEEEECC
Confidence 566667653 347888865331 1122211 111 11233333344677777652 567788987
No 184
>PF13013 F-box-like_2: F-box-like domain
Probab=47.67 E-value=30 Score=27.46 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=29.1
Q ss_pred cccccCcccchhhHHHHHhhccCChhhhhhHHHhhHH
Q 042793 129 CREVCGIFQLSDEVISLKILSWLSPRDIASVGSVCRR 165 (545)
Q Consensus 129 ~~~~~~~~~lp~~~~~~~~~~~l~~~~~~~~~~vcr~ 165 (545)
+.+.-.+..||+|++ ..|+......++..+...|+.
T Consensus 16 ~~~~ltl~DLP~ELl-~~I~~~C~~~~l~~l~~~~~~ 51 (109)
T PF13013_consen 16 NRQSLTLLDLPWELL-QLIFDYCNDPILLALSRTCRA 51 (109)
T ss_pred CccccchhhChHHHH-HHHHhhcCcHHHHHHHHHHHH
Confidence 344446888999999 589999999999888887774
No 185
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=46.52 E-value=2.9e+02 Score=27.03 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=15.7
Q ss_pred CcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 398 GRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 398 ~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.++||+.--....+.-.....+||+||+.
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 45888763211111111235799999998
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=46.45 E-value=2.4e+02 Score=26.03 Aligned_cols=91 Identities=11% Similarity=0.076 Sum_probs=48.2
Q ss_pred ceEeccCCC---CCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECC
Q 042793 322 TWREISGLA---PPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGG 398 (545)
Q Consensus 322 ~W~~~~~~~---~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 398 (545)
.|+...++. .+.|-.+.....-..+.++..||- ..+|..|+++. +.+..- ....-+-|+++.-+.
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G--~i~r~~---rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDG--RIQREY---RGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCC--EEEEEE---cCCcceeeeeeeccc
Confidence 677666652 244554433333245678888872 24778886644 665543 233345666654332
Q ss_pred cEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEe
Q 042793 399 RKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCV 435 (545)
Q Consensus 399 ~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v 435 (545)
+-=++.|+.+ ..+.++|.. +.+-.++
T Consensus 168 ~~qilsG~ED---------GtvRvWd~k--t~k~v~~ 193 (325)
T KOG0649|consen 168 NGQILSGAED---------GTVRVWDTK--TQKHVSM 193 (325)
T ss_pred CcceeecCCC---------ccEEEEecc--ccceeEE
Confidence 2334455543 445566877 4444433
No 187
>smart00284 OLF Olfactomedin-like domains.
Probab=43.11 E-value=2.9e+02 Score=25.91 Aligned_cols=160 Identities=14% Similarity=0.054 Sum_probs=75.3
Q ss_pred CCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCc-eEEeccCC----CCCCccceeEE--EEcCCEEEEE
Q 042793 227 VEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPE-WQHVHVSS----PPPGRWGHTLS--CVNGSHLVVF 299 (545)
Q Consensus 227 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~-W~~~~~~~----~~~~r~~~~~~--~~~~~~iyv~ 299 (545)
+|-+-.+-+.+++++.||.--. .++.+.+||+.+.... ++.++... .+....+++-. +++++-|.|+
T Consensus 70 Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvI 143 (255)
T smart00284 70 LPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVI 143 (255)
T ss_pred CCCccccccEEEECceEEEEec------CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEE
Confidence 3445667778889999997543 2358999999987221 23232110 11111111111 2334445444
Q ss_pred -cCCCCCcccCcEEEEecCCCC--CceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCce
Q 042793 300 -GGCGRQGLLNDVFVLDLDAKP--PTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVW 376 (545)
Q Consensus 300 -GG~~~~~~~~~~~~yd~~t~~--~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W 376 (545)
......+. --+-.+|+.+-. .+|.. +. +.+..+.+-++| | .+|+.-..... ...-.+.||..+++...
T Consensus 144 Yat~~~~g~-ivvSkLnp~tL~ve~tW~T--~~--~k~sa~naFmvC-G-vLY~~~s~~~~--~~~I~yayDt~t~~~~~ 214 (255)
T smart00284 144 YATEQNAGK-IVISKLNPATLTIENTWIT--TY--NKRSASNAFMIC-G-ILYVTRSLGSK--GEKVFYAYDTNTGKEGH 214 (255)
T ss_pred EeccCCCCC-EEEEeeCcccceEEEEEEc--CC--CcccccccEEEe-e-EEEEEccCCCC--CcEEEEEEECCCCccce
Confidence 21111110 012234444321 16664 11 334444444444 6 89998532211 12336889965443333
Q ss_pred EEecCCCCCCCCCCcEEEEEC--CcEEEEE
Q 042793 377 REIPVTWTPPSRLGHTLSVYG--GRKILMF 404 (545)
Q Consensus 377 ~~~~~~~~p~~r~~~~~~~~~--~~~lyi~ 404 (545)
..++ .+..-..+++.-++ +++||+.
T Consensus 215 ~~i~---f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 215 LDIP---FENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred eeee---eccccccceeceeCCCCCeEEEE
Confidence 2222 33333344554453 4588877
No 188
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms]
Probab=42.45 E-value=90 Score=26.19 Aligned_cols=47 Identities=28% Similarity=0.225 Sum_probs=38.2
Q ss_pred CeEEEEEEeeecCCcc-eeEEEEEEEeecCCCCEEEEEEEeeeeeeccc
Q 042793 45 IEFQGELLNFRKDGSP-LMNRLRLSPIYGDDETITHVIGIQFFTEANVD 92 (545)
Q Consensus 45 ~~~~~e~~~~~kdG~~-~w~~~~~~pi~d~~g~~~~~i~~~~Dite~~~ 92 (545)
.....+.....++|.. .|....+.+... +|.+..+.....|++++++
T Consensus 183 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~ 230 (232)
T COG2202 183 GPLEIEYRVRRKDGERVRWILSRISPVRD-DGEIVGVVGIARDITERKQ 230 (232)
T ss_pred CCcceEEEEEecCCCEEEEEEeeeeEecC-CCceEEEEEEEechHHHhh
Confidence 4467788888999996 888888877766 7888888899999998774
No 189
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=41.96 E-value=50 Score=20.35 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=16.0
Q ss_pred eeeEEECCEEEEEcCCCCCCCccCceEEEeCCC
Q 042793 234 FSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNS 266 (545)
Q Consensus 234 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t 266 (545)
.+.++.++.||+.+... .++++|+.|
T Consensus 15 ~~~~v~~g~vyv~~~dg-------~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDG-------NLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTS-------EEEEEETT-
T ss_pred cCCEEECCEEEEEcCCC-------EEEEEeCCC
Confidence 34466788888876532 799998764
No 190
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=41.32 E-value=2.7e+02 Score=25.14 Aligned_cols=63 Identities=8% Similarity=0.139 Sum_probs=30.8
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++.++.++.+ ..+.++|+.+.. .-..+. .. . ..-.++....++++++.|+.+ ..+.+||+.+.
T Consensus 63 ~~~l~~~~~~------~~i~i~~~~~~~-~~~~~~--~~-~-~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~ 125 (289)
T cd00200 63 GTYLASGSSD------KTIRLWDLETGE-CVRTLT--GH-T-SYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETG 125 (289)
T ss_pred CCEEEEEcCC------CeEEEEEcCccc-ceEEEe--cc-C-CcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCc
Confidence 3456666542 278888887641 111111 11 1 111222222233566666522 46888998865
No 191
>PLN00181 protein SPA1-RELATED; Provisional
Probab=41.17 E-value=5.6e+02 Score=28.70 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=30.5
Q ss_pred CEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEE--cCCEEEEEcCCCCCCCccCcEEEEecCC
Q 042793 294 SHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL--DGTKLIVSGGCADSGVLLSDTFLLDLSM 371 (545)
Q Consensus 294 ~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 371 (545)
..+++.||.++ .+.+||+.+.. ....+.. .. ...++.+ .++.+++.|+.+ +.+.+||+..
T Consensus 588 ~~~L~Sgs~Dg-----~v~iWd~~~~~-~~~~~~~---~~---~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~ 649 (793)
T PLN00181 588 PTLLASGSDDG-----SVKLWSINQGV-SIGTIKT---KA---NICCVQFPSESGRSLAFGSAD------HKVYYYDLRN 649 (793)
T ss_pred CCEEEEEcCCC-----EEEEEECCCCc-EEEEEec---CC---CeEEEEEeCCCCCEEEEEeCC------CeEEEEECCC
Confidence 35667776543 57888887651 1122211 11 1112222 234667777643 3588999753
No 192
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=40.51 E-value=5.6e+02 Score=28.54 Aligned_cols=190 Identities=21% Similarity=0.207 Sum_probs=91.3
Q ss_pred cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceE---E------------------EEcCCEEEE
Q 042793 292 NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSS---C------------------TLDGTKLIV 350 (545)
Q Consensus 292 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~---~------------------~~~~~~iyv 350 (545)
.+++||+... .+.++.+|..|....|+.-+...... ...+.. + ...+++||+
T Consensus 193 vgg~lYv~t~------~~~V~ALDa~TGk~lW~~d~~~~~~~-~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~ 265 (764)
T TIGR03074 193 VGDTLYLCTP------HNKVIALDAATGKEKWKFDPKLKTEA-GRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIIL 265 (764)
T ss_pred ECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCccc-ccccccccceEEecCCcccccccccccccccCCEEEE
Confidence 3668999754 25689999999888898654331110 001100 0 011335554
Q ss_pred EcCCCCCCCccCcEEEEecCCCCCceEEecC---------CCCCCCC--CCcEEEEECCcEEEEEcccCCCCC-CccccC
Q 042793 351 SGGCADSGVLLSDTFLLDLSMEKPVWREIPV---------TWTPPSR--LGHTLSVYGGRKILMFGGLAKSGP-LRFRSS 418 (545)
Q Consensus 351 ~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~---------~~~p~~r--~~~~~~~~~~~~lyi~GG~~~~~~-~~~~~~ 418 (545)
+.. + ..++.+|.++.+..|..-.. ...+..- ...+-++.++ .+| +|+...++. ......
T Consensus 266 -~T~-D-----g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VI-vG~~v~d~~~~~~~~G 336 (764)
T TIGR03074 266 -PTS-D-----ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVV-IGGRVADNYSTDEPSG 336 (764)
T ss_pred -ecC-C-----CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECC-EEE-EEecccccccccCCCc
Confidence 222 1 23677887777667753211 0112111 1222244555 555 465432211 001246
Q ss_pred cEEEEeCCCCCCceEEeecCCCCCCCC--CCCCCCCCCcce---EEEEe--cCCEEEEEcCcC-----------CCCCCC
Q 042793 419 DVFTMDLSEEEPCWRCVTGSGMPGAGN--PGGIAPPPRLDH---VAVSL--PGGRILIFGGSV-----------AGLHSA 480 (545)
Q Consensus 419 ~i~~~d~~~~~~~W~~v~~~~~~~~~~--~~g~~p~~r~~~---~~~~~--~~~~l~v~GG~~-----------~~~~~~ 480 (545)
.|..||.++....|+.-... +.... ..+..- .+.+. ....+ ..+.+|+=-|.. ......
T Consensus 337 ~I~A~Da~TGkl~W~~~~g~--p~~~~~~~~g~~~-~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~ 413 (764)
T TIGR03074 337 VIRAFDVNTGALVWAWDPGN--PDPTAPPAPGETY-TRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYS 413 (764)
T ss_pred EEEEEECCCCcEeeEEecCC--CCcccCCCCCCEe-ccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCccccc
Confidence 78999999877889765321 00000 000000 01100 11111 124455522211 122346
Q ss_pred CceEEEcCCCCCCceEEecc
Q 042793 481 TQLYLLDPTEEKPTWRILNV 500 (545)
Q Consensus 481 ~~v~~~d~~~~~~~W~~~~~ 500 (545)
+.+..+|++|.+.+|..-..
T Consensus 414 ~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 414 SSLVALDATTGKERWVFQTV 433 (764)
T ss_pred ceEEEEeCCCCceEEEeccc
Confidence 78999999988888988643
No 193
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=40.21 E-value=4.4e+02 Score=27.26 Aligned_cols=208 Identities=17% Similarity=0.125 Sum_probs=92.2
Q ss_pred cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCC-CCC---CCCccceEEEE------cCCEEEEEcCCCCCCCcc
Q 042793 292 NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGL-APP---LPRSWHSSCTL------DGTKLIVSGGCADSGVLL 361 (545)
Q Consensus 292 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~-~~~---~~r~~~~~~~~------~~~~iyv~GG~~~~~~~~ 361 (545)
.++.|+|+-|... .-+||-.-. .|.+...+ ... .---+|.+... .....|+..+.+.
T Consensus 225 Tg~~iLvvsg~aq------akl~DRdG~--~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg----- 291 (641)
T KOG0772|consen 225 TGDQILVVSGSAQ------AKLLDRDGF--EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG----- 291 (641)
T ss_pred CCCeEEEEecCcc------eeEEccCCc--eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC-----
Confidence 5678888887543 345555555 55543211 000 11123333222 1223455444321
Q ss_pred CcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCC
Q 042793 362 SDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMP 441 (545)
Q Consensus 362 ~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~ 441 (545)
.+-.+|+.....+-+.+.+......|...+.|.++.+.-.|.+|+.+. +..+|.+ . .|..-+.+-
T Consensus 292 -tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG------SIQ~W~~--~----~~~v~p~~~-- 356 (641)
T KOG0772|consen 292 -TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG------SIQIWDK--G----SRTVRPVMK-- 356 (641)
T ss_pred -cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC------ceeeeec--C----CcccccceE--
Confidence 233444323222223333333445677778888864333366676432 2445533 2 233222110
Q ss_pred CCCCCCCCCCCCCcceEEEEe-cCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCee
Q 042793 442 GAGNPGGIAPPPRLDHVAVSL-PGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTR 520 (545)
Q Consensus 442 ~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~ 520 (545)
......+-..-+++.. .++++++--|.+ +.+-++|+..- =+.+..-..+|.+--..-+|...+.+
T Consensus 357 -----vk~AH~~g~~Itsi~FS~dg~~LlSRg~D------~tLKvWDLrq~---kkpL~~~tgL~t~~~~tdc~FSPd~k 422 (641)
T KOG0772|consen 357 -----VKDAHLPGQDITSISFSYDGNYLLSRGFD------DTLKVWDLRQF---KKPLNVRTGLPTPFPGTDCCFSPDDK 422 (641)
T ss_pred -----eeeccCCCCceeEEEeccccchhhhccCC------Cceeeeecccc---ccchhhhcCCCccCCCCccccCCCce
Confidence 0011112112223322 266666665543 44666776421 11222222344433344555666778
Q ss_pred EEEEcCCCCcccccccceeee
Q 042793 521 TIVLGGQTGEEWMLSELHELS 541 (545)
Q Consensus 521 l~i~GG~~~~~~~~~~~~~l~ 541 (545)
|++-|-...++.....++.|+
T Consensus 423 li~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 423 LILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred EEEecccccCCCCCceEEEEe
Confidence 777775544444344455554
No 194
>PRK03629 tolB translocation protein TolB; Provisional
Probab=39.42 E-value=4.3e+02 Score=26.92 Aligned_cols=160 Identities=20% Similarity=0.195 Sum_probs=71.9
Q ss_pred EEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCC
Q 042793 295 HLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKP 374 (545)
Q Consensus 295 ~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~ 374 (545)
-+||....+ ..+...+|+.|.+.. .=+.+... +. ........-+|+++....- ..+ ...++.+++...
T Consensus 166 iayv~~~~~-~~~~~~l~~~d~dg~--~~~~lt~~--~~-~~~~p~wSPDG~~la~~s~--~~g--~~~i~i~dl~~G-- 233 (429)
T PRK03629 166 IAYVVQTNG-GQFPYELRVSDYDGY--NQFVVHRS--PQ-PLMSPAWSPDGSKLAYVTF--ESG--RSALVIQTLANG-- 233 (429)
T ss_pred EEEEEeeCC-CCcceeEEEEcCCCC--CCEEeecC--CC-ceeeeEEcCCCCEEEEEEe--cCC--CcEEEEEECCCC--
Confidence 345554322 234568999988754 21223221 11 1111122234545543321 111 246888886543
Q ss_pred ceEEecCCCCCCCCCCcEEEEE-CCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCC
Q 042793 375 VWREIPVTWTPPSRLGHTLSVY-GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPP 453 (545)
Q Consensus 375 ~W~~~~~~~~p~~r~~~~~~~~-~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~ 453 (545)
+-+.+.. .+.. .. ..... ++++|++..... + ..++|.+|+. +.+.+.+... +.
T Consensus 234 ~~~~l~~--~~~~-~~-~~~~SPDG~~La~~~~~~--g-----~~~I~~~d~~--tg~~~~lt~~------------~~- 287 (429)
T PRK03629 234 AVRQVAS--FPRH-NG-APAFSPDGSKLAFALSKT--G-----SLNLYVMDLA--SGQIRQVTDG------------RS- 287 (429)
T ss_pred CeEEccC--CCCC-cC-CeEECCCCCEEEEEEcCC--C-----CcEEEEEECC--CCCEEEccCC------------CC-
Confidence 4444432 2211 11 12222 343565543321 1 2569999998 5566665422 11
Q ss_pred CcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEe
Q 042793 454 RLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 454 r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~ 498 (545)
... ......+++.+++..... ...++|.+|++ +..-+.+
T Consensus 288 ~~~-~~~wSPDG~~I~f~s~~~---g~~~Iy~~d~~--~g~~~~l 326 (429)
T PRK03629 288 NNT-EPTWFPDSQNLAYTSDQA---GRPQVYKVNIN--GGAPQRI 326 (429)
T ss_pred CcC-ceEECCCCCEEEEEeCCC---CCceEEEEECC--CCCeEEe
Confidence 111 122223555444433211 13579999986 3444555
No 195
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=39.33 E-value=4.2e+02 Score=26.74 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=51.9
Q ss_pred cEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCC
Q 042793 310 DVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRL 389 (545)
Q Consensus 310 ~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~ 389 (545)
.+-+||+... . .+... |..-..-.+..+..|-.|+.-+.+++ .+..+|++... ....+. .+.. .
T Consensus 370 ~vkiwdlks~--~--~~a~F--pght~~vk~i~FsENGY~Lat~add~-----~V~lwDLRKl~-n~kt~~---l~~~-~ 433 (506)
T KOG0289|consen 370 VVKIWDLKSQ--T--NVAKF--PGHTGPVKAISFSENGYWLATAADDG-----SVKLWDLRKLK-NFKTIQ---LDEK-K 433 (506)
T ss_pred eEEEEEcCCc--c--ccccC--CCCCCceeEEEeccCceEEEEEecCC-----eEEEEEehhhc-ccceee---cccc-c
Confidence 4778888876 2 34433 21111112333444445665554332 37888876332 222222 1111 1
Q ss_pred CcEEEEEC-CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecC
Q 042793 390 GHTLSVYG-GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGS 438 (545)
Q Consensus 390 ~~~~~~~~-~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~ 438 (545)
......++ .+..++++|. .-.||.++.. +.+|+++...
T Consensus 434 ~v~s~~fD~SGt~L~~~g~---------~l~Vy~~~k~--~k~W~~~~~~ 472 (506)
T KOG0289|consen 434 EVNSLSFDQSGTYLGIAGS---------DLQVYICKKK--TKSWTEIKEL 472 (506)
T ss_pred cceeEEEcCCCCeEEeecc---------eeEEEEEecc--cccceeeehh
Confidence 22233333 2356666653 3567777777 8899999766
No 196
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=36.46 E-value=6.1 Score=30.93 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=35.0
Q ss_pred hhhhccccc-----CCCcccCCCC-ccccccCcccc-hhhHHHHHhhccCChhhh
Q 042793 109 ERQRSFFSG-----NRTFPIGDRN-VCREVCGIFQL-SDEVISLKILSWLSPRDI 156 (545)
Q Consensus 109 ~r~~~~~~~-----~~~~~~g~~~-~~~~~~~~~~l-p~~~~~~~~~~~l~~~~~ 156 (545)
||++.++++ +..+.+|... +|++.+.++|+ ++++++..+..++++.+.
T Consensus 1 e~~~~i~~~~~~~i~~~d~~g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~~~~~ 55 (113)
T PF00989_consen 1 ERYRAILENSPDGIFVIDEDGRILYVNQAAEELLGYSREELIGKSLFDLIHPEDR 55 (113)
T ss_dssp HHHHHHHHCSSSEEEEEETTSBEEEECHHHHHHHSS-HHHHTTSBGGGGCSGGGH
T ss_pred CHHHHHHhcCCceEEEEeCcCeEEEECHHHHHHHccCHHHHcCCcHHHhcCchhh
Confidence 355555553 5556777764 89999999999 888888777777777544
No 197
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.54 E-value=4.7e+02 Score=25.94 Aligned_cols=152 Identities=16% Similarity=0.141 Sum_probs=72.5
Q ss_pred EEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccC----CCCCCccceeEEEEcC--CEEEEEcCCCCCcccCcEEEEe
Q 042793 242 RVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVS----SPPPGRWGHTLSCVNG--SHLVVFGGCGRQGLLNDVFVLD 315 (545)
Q Consensus 242 ~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~----~~~~~r~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~yd 315 (545)
.|+.+||... .+.+-++|+......|+--..+ ++-.|-+...+..+.+ ++-|+.+- .+..+-.||
T Consensus 162 ~Iva~GGke~----~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-----~~hqvR~YD 232 (412)
T KOG3881|consen 162 YIVATGGKEN----INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-----RYHQVRLYD 232 (412)
T ss_pred ceEecCchhc----ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe-----cceeEEEec
Confidence 5888898642 4466666766554577642211 2334445444444444 33444321 245688899
Q ss_pred cCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCC-CCCCCCCCcEEE
Q 042793 316 LDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVT-WTPPSRLGHTLS 394 (545)
Q Consensus 316 ~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~-~~p~~r~~~~~~ 394 (545)
+.+. =+++.......--..+.+....++.||+ |- ...++..||+... +--...-. ..... .++.
T Consensus 233 t~~q---RRPV~~fd~~E~~is~~~l~p~gn~Iy~-gn------~~g~l~~FD~r~~--kl~g~~~kg~tGsi---rsih 297 (412)
T KOG3881|consen 233 TRHQ---RRPVAQFDFLENPISSTGLTPSGNFIYT-GN------TKGQLAKFDLRGG--KLLGCGLKGITGSI---RSIH 297 (412)
T ss_pred Cccc---CcceeEeccccCcceeeeecCCCcEEEE-ec------ccchhheecccCc--eeeccccCCccCCc---ceEE
Confidence 9875 2333322101111112222334544444 32 2356888996532 22111000 01111 2334
Q ss_pred EECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 395 VYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 395 ~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.+.+..++..+|.+ .-+.+||..
T Consensus 298 ~hp~~~~las~GLD---------RyvRIhD~k 320 (412)
T KOG3881|consen 298 CHPTHPVLASCGLD---------RYVRIHDIK 320 (412)
T ss_pred EcCCCceEEeeccc---------eeEEEeecc
Confidence 44554677777763 456677876
No 198
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=34.47 E-value=49 Score=26.25 Aligned_cols=69 Identities=13% Similarity=0.309 Sum_probs=46.5
Q ss_pred CcccchhhHHHHHhhccCChhhhhhHHHhhHHHHHhcCChhhHHHHhhhcccCCceeceeccCCccccccchhhhh
Q 042793 134 GIFQLSDEVISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWRMVCQNAWGSETTRVLETVPGAKRLGWGRLARE 209 (545)
Q Consensus 134 ~~~~lp~~~~~~~~~~~l~~~~~~~~~~vcr~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 209 (545)
.+-++|.+++ ..||..+++.++..+-..|..+. ..+.++|+..|...+.... ........-.|..+|..
T Consensus 3 dvG~~py~ll-~piL~~~~~~QL~~iE~~np~l~--~~tdeLW~~~i~rdFp~~~----~~~~~~~~~~Wr~~Y~~ 71 (109)
T PF06881_consen 3 DVGDVPYHLL-RPILEKCSPEQLRRIEDNNPHLI--EDTDELWKKLIKRDFPEES----KRQKPKEPESWRELYEK 71 (109)
T ss_pred ccCCCCHHHH-HHHHccCCHHHHHHHHHhCCCcc--hhhHHHHHHHHHhHCcChh----hcccccccchHHHHHHH
Confidence 3556899999 58999999999999988874332 2377899999988775411 11111233477776654
No 199
>PTZ00420 coronin; Provisional
Probab=34.06 E-value=6.1e+02 Score=27.08 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=29.7
Q ss_pred EEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCC
Q 042793 295 HLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSM 371 (545)
Q Consensus 295 ~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 371 (545)
.+++.||.+ ..+.++|+.+...... +.. +. .-.++....++.+++.++.+ ..+.+||+..
T Consensus 139 ~iLaSgS~D-----gtIrIWDl~tg~~~~~-i~~---~~--~V~SlswspdG~lLat~s~D------~~IrIwD~Rs 198 (568)
T PTZ00420 139 YIMCSSGFD-----SFVNIWDIENEKRAFQ-INM---PK--KLSSLKWNIKGNLLSGTCVG------KHMHIIDPRK 198 (568)
T ss_pred eEEEEEeCC-----CeEEEEECCCCcEEEE-Eec---CC--cEEEEEECCCCCEEEEEecC------CEEEEEECCC
Confidence 455566654 3578899987622221 211 11 11122222233566665532 3488899653
No 200
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=33.92 E-value=5.4e+02 Score=26.39 Aligned_cols=19 Identities=16% Similarity=0.066 Sum_probs=15.1
Q ss_pred CCceeEEeCCeeEEEEcCC
Q 042793 509 WGHSTCVVGGTRTIVLGGQ 527 (545)
Q Consensus 509 ~~~~~~~~~~~~l~i~GG~ 527 (545)
..|+.++-.++.||.+|..
T Consensus 293 ~~h~~al~~~G~i~a~G~n 311 (476)
T COG5184 293 KDHSLALDEDGEIYAWGVN 311 (476)
T ss_pred cceEEEEcCCCeEEEeccc
Confidence 4678877778999999964
No 201
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=33.49 E-value=11 Score=38.85 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=48.8
Q ss_pred EEEeecCCCCEEEEEEEeeeeeecccCCCCCCchhHHH-hhhhhhhhccccc-----CCCcccCCCC-ccccccCcccc-
Q 042793 67 LSPIYGDDETITHVIGIQFFTEANVDLGPVPGYPVKEF-LKSSERQRSFFSG-----NRTFPIGDRN-VCREVCGIFQL- 138 (545)
Q Consensus 67 ~~pi~d~~g~~~~~i~~~~Dite~~~~~~~~~~~~~~~-~~~~~r~~~~~~~-----~~~~~~g~~~-~~~~~~~~~~l- 138 (545)
-.++.++.+++++++.++.|+++..+. .+.. .+..++++.++++ ...+.+|..- .|.+...+.++
T Consensus 81 ~~~~~~~~~~~~g~~~~~~~~~e~~~~-------~~~~l~~~~~~l~~il~~~~~~l~vvD~~G~~i~~N~~~~~~~gl~ 153 (560)
T COG3829 81 GKTPVDEQGRVVGVLEVFLDISEALEL-------IEENLRQLRQRLEAILDSIDDGLLVVDEDGIIIYYNKAYAKLLGLS 153 (560)
T ss_pred CCceeecCCceeeeehhhhhhHHHHHH-------HHHHHHHHHHHHHHHHhhccCceEEEcCCCcEEEEcHHHHHHhCCC
Confidence 344556788999999999999986643 2222 3344566666664 4445555553 78899999999
Q ss_pred hhhHHHH
Q 042793 139 SDEVISL 145 (545)
Q Consensus 139 p~~~~~~ 145 (545)
++++++.
T Consensus 154 ~e~~~gk 160 (560)
T COG3829 154 PEEVLGK 160 (560)
T ss_pred HHHHcCC
Confidence 7777764
No 202
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=32.87 E-value=5.2e+02 Score=25.94 Aligned_cols=133 Identities=14% Similarity=0.134 Sum_probs=67.7
Q ss_pred cEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCC-CCceEEecCCCCCCCC
Q 042793 310 DVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSME-KPVWREIPVTWTPPSR 388 (545)
Q Consensus 310 ~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~-~~~W~~~~~~~~p~~r 388 (545)
.+...|..|. .-....+- ..+-+..+++.+.++.-+|.|+.+ ..+...|++.+ ...|+-+.. ++
T Consensus 292 ~~~lwDv~tg--d~~~~y~~--~~~~S~~sc~W~pDg~~~V~Gs~d------r~i~~wdlDgn~~~~W~gvr~-----~~ 356 (519)
T KOG0293|consen 292 VLSLWDVDTG--DLRHLYPS--GLGFSVSSCAWCPDGFRFVTGSPD------RTIIMWDLDGNILGNWEGVRD-----PK 356 (519)
T ss_pred heeeccCCcc--hhhhhccc--CcCCCcceeEEccCCceeEecCCC------CcEEEecCCcchhhccccccc-----ce
Confidence 3667777776 22211111 122333344445455668888753 34667775432 236876653 22
Q ss_pred CCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEE
Q 042793 389 LGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRIL 468 (545)
Q Consensus 389 ~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~ 468 (545)
..--+...++..+++++- ...+..|+.+ +..=+.+-.. ..+ -++..+..++++.
T Consensus 357 v~dlait~Dgk~vl~v~~----------d~~i~l~~~e--~~~dr~lise------------~~~--its~~iS~d~k~~ 410 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTV----------DKKIRLYNRE--ARVDRGLISE------------EQP--ITSFSISKDGKLA 410 (519)
T ss_pred eEEEEEcCCCcEEEEEec----------ccceeeechh--hhhhhccccc------------cCc--eeEEEEcCCCcEE
Confidence 222333556667777762 3667778877 3222211111 111 1223333467777
Q ss_pred EEcCcCCCCCCCCceEEEcCC
Q 042793 469 IFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 469 v~GG~~~~~~~~~~v~~~d~~ 489 (545)
++-= ....+..+|++
T Consensus 411 LvnL------~~qei~LWDl~ 425 (519)
T KOG0293|consen 411 LVNL------QDQEIHLWDLE 425 (519)
T ss_pred EEEc------ccCeeEEeecc
Confidence 7633 34678889985
No 203
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=31.25 E-value=5.5e+02 Score=25.72 Aligned_cols=163 Identities=17% Similarity=0.171 Sum_probs=68.3
Q ss_pred cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEE-EEcCCCCCCCccCcEEEEecC
Q 042793 292 NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLI-VSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 292 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iy-v~GG~~~~~~~~~~~~~~d~~ 370 (545)
+|++|+..|-+++ ...++..|+.+. +=+++... +..-..-...+.+++.+| +-.+ ..+...|++
T Consensus 46 dG~kllF~s~~dg---~~nly~lDL~t~--~i~QLTdg--~g~~~~g~~~s~~~~~~~Yv~~~--------~~l~~vdL~ 110 (386)
T PF14583_consen 46 DGRKLLFASDFDG---NRNLYLLDLATG--EITQLTDG--PGDNTFGGFLSPDDRALYYVKNG--------RSLRRVDLD 110 (386)
T ss_dssp TS-EEEEEE-TTS---S-EEEEEETTT---EEEE---S--S-B-TTT-EE-TTSSEEEEEETT--------TEEEEEETT
T ss_pred CCCEEEEEeccCC---CcceEEEEcccC--EEEECccC--CCCCccceEEecCCCeEEEEECC--------CeEEEEECC
Confidence 3445544443332 346899999999 88888865 211111223333455654 4333 247788865
Q ss_pred CCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCC--CCC------------CccccCcEEEEeCCCCCCceEEee
Q 042793 371 MEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAK--SGP------------LRFRSSDVFTMDLSEEEPCWRCVT 436 (545)
Q Consensus 371 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~--~~~------------~~~~~~~i~~~d~~~~~~~W~~v~ 436 (545)
+. +=+.+-. .|....+....+.+.+.-.++|-... ... .+...+.|+..|+. +.+.+.+-
T Consensus 111 T~--e~~~vy~--~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~--tG~~~~v~ 184 (386)
T PF14583_consen 111 TL--EERVVYE--VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK--TGERKVVF 184 (386)
T ss_dssp T----EEEEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT--T--EEEEE
T ss_pred cC--cEEEEEE--CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC--CCceeEEE
Confidence 43 4334432 34443333332322111122221100 000 01124568888888 66777664
Q ss_pred cCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCC-CceEEEcCC
Q 042793 437 GSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSA-TQLYLLDPT 489 (545)
Q Consensus 437 ~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~-~~v~~~d~~ 489 (545)
.. ..-.+|.-..=.+..++.|-=.. +.+.. ..||..|.+
T Consensus 185 ~~-------------~~wlgH~~fsP~dp~li~fCHEG-pw~~Vd~RiW~i~~d 224 (386)
T PF14583_consen 185 ED-------------TDWLGHVQFSPTDPTLIMFCHEG-PWDLVDQRIWTINTD 224 (386)
T ss_dssp EE-------------SS-EEEEEEETTEEEEEEEEE-S--TTTSS-SEEEEETT
T ss_pred ec-------------CccccCcccCCCCCCEEEEeccC-CcceeceEEEEEEcC
Confidence 33 11235555444455666662111 22233 489999986
No 204
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=31.20 E-value=5.8e+02 Score=25.95 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=14.9
Q ss_pred CCeeEEEEcCCCCcccccccceeeeecc
Q 042793 517 GGTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 517 ~~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
.++.+++.|+.++. +-++|+.|
T Consensus 287 ~DgtlLlSGd~dg~------VcvWdi~S 308 (476)
T KOG0646|consen 287 TDGTLLLSGDEDGK------VCVWDIYS 308 (476)
T ss_pred cCccEEEeeCCCCC------EEEEecch
Confidence 37899999988754 44555544
No 205
>PF14830 Haemocyan_bet_s: Haemocyanin beta-sandwich; PDB: 1JS8_B 3QJO_A 1LNL_A.
Probab=31.15 E-value=40 Score=26.36 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=15.0
Q ss_pred CeeEEEEcCCCCcccccccceeeeecc
Q 042793 518 GTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 518 ~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
.+.++|+||...-.+..+-+|+|||..
T Consensus 36 AG~F~vLGG~~EMpW~FdRlykydIT~ 62 (103)
T PF14830_consen 36 AGTFFVLGGEKEMPWAFDRLYKYDITD 62 (103)
T ss_dssp EEEEEE---TTS---B-SS-EEEE-HH
T ss_pred ccEEEEcCCCccCccccCccchhhHHH
Confidence 478999999987777889999999863
No 206
>PLN00181 protein SPA1-RELATED; Provisional
Probab=30.20 E-value=8.2e+02 Score=27.38 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=46.7
Q ss_pred EEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEE--cCCEEEEEcCCCCCCCccCcEEEEecCCC
Q 042793 295 HLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL--DGTKLIVSGGCADSGVLLSDTFLLDLSME 372 (545)
Q Consensus 295 ~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 372 (545)
..++.|+.+ ..+.++|..+. +- +.....-.. . -.++.+ .++.+++.||.+ ..+.+||+...
T Consensus 546 ~~las~~~D-----g~v~lWd~~~~--~~--~~~~~~H~~-~-V~~l~~~p~~~~~L~Sgs~D------g~v~iWd~~~~ 608 (793)
T PLN00181 546 SQVASSNFE-----GVVQVWDVARS--QL--VTEMKEHEK-R-VWSIDYSSADPTLLASGSDD------GSVKLWSINQG 608 (793)
T ss_pred CEEEEEeCC-----CeEEEEECCCC--eE--EEEecCCCC-C-EEEEEEcCCCCCEEEEEcCC------CEEEEEECCCC
Confidence 355555543 35788898776 32 211100111 1 112222 234567777753 24788886532
Q ss_pred CCceEEecCCCCCCCCCCcEEEEE--CCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 373 KPVWREIPVTWTPPSRLGHTLSVY--GGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 373 ~~~W~~~~~~~~p~~r~~~~~~~~--~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.....+.. . .....+.+ .++.+++.|+. ...|+.||+.
T Consensus 609 -~~~~~~~~---~---~~v~~v~~~~~~g~~latgs~---------dg~I~iwD~~ 648 (793)
T PLN00181 609 -VSIGTIKT---K---ANICCVQFPSESGRSLAFGSA---------DHKVYYYDLR 648 (793)
T ss_pred -cEEEEEec---C---CCeEEEEEeCCCCCEEEEEeC---------CCeEEEEECC
Confidence 12222221 1 11112222 23367777764 3678888986
No 207
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=29.56 E-value=1.1e+02 Score=24.46 Aligned_cols=45 Identities=18% Similarity=0.400 Sum_probs=26.2
Q ss_pred HHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeee
Q 042793 37 IRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFT 87 (545)
Q Consensus 37 ~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Di 87 (545)
..+++ .|+++... ..|+.-+......||+|.+|++++++.+-..+
T Consensus 69 ~~~aL-~G~~~~~~-----~~~~~~~~~~~~~PV~d~~g~viG~V~VG~~~ 113 (116)
T PF14827_consen 69 VRKAL-QGKSYTSV-----SQGTGGPSLRAFAPVYDSDGKVIGVVSVGVSL 113 (116)
T ss_dssp HCHHC-CT--EEEE-----EECTTCEEEEEEEEEE-TTS-EEEEEEEEEEH
T ss_pred hhhhh-cCCceEEe-----eecCCceEEEEEEeeECCCCcEEEEEEEEEEc
Confidence 34455 66655553 22333455567899999999999988776543
No 208
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=29.39 E-value=9.7e+02 Score=27.99 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=42.1
Q ss_pred EEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCC-cceEE-EEecCCEEEE
Q 042793 392 TLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPR-LDHVA-VSLPGGRILI 469 (545)
Q Consensus 392 ~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r-~~~~~-~~~~~~~l~v 469 (545)
+++...++.+||.... .+.|.+||+. +.....+...|..+. ..|...... ..... ++..++++||
T Consensus 808 Gvavd~dG~LYVADs~---------N~rIrviD~~--tg~v~tiaG~G~~G~--~dG~~~~a~l~~P~GIavd~dG~lyV 874 (1057)
T PLN02919 808 GVLCAKDGQIYVADSY---------NHKIKKLDPA--TKRVTTLAGTGKAGF--KDGKALKAQLSEPAGLALGENGRLFV 874 (1057)
T ss_pred eeeEeCCCcEEEEECC---------CCEEEEEECC--CCeEEEEeccCCcCC--CCCcccccccCCceEEEEeCCCCEEE
Confidence 3444444478888653 4789999988 666666654421110 011111111 11122 2223678998
Q ss_pred EcCcCCCCCCCCceEEEcCCC
Q 042793 470 FGGSVAGLHSATQLYLLDPTE 490 (545)
Q Consensus 470 ~GG~~~~~~~~~~v~~~d~~~ 490 (545)
.-.. .+.|.++|+.+
T Consensus 875 aDt~------Nn~Irvid~~~ 889 (1057)
T PLN02919 875 ADTN------NSLIRYLDLNK 889 (1057)
T ss_pred EECC------CCEEEEEECCC
Confidence 8553 35688888863
No 209
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=28.93 E-value=8e+02 Score=26.87 Aligned_cols=106 Identities=13% Similarity=0.148 Sum_probs=52.5
Q ss_pred cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEc-CCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 292 NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLD-GTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 292 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
.+..+++.|+.++ .|-++|.... . .+... ..+-++++++.+. .++..+..-.+ ..+-.+|+.
T Consensus 360 pDgq~iaTG~eDg-----KVKvWn~~Sg---f-C~vTF--teHts~Vt~v~f~~~g~~llssSLD------GtVRAwDlk 422 (893)
T KOG0291|consen 360 PDGQLIATGAEDG-----KVKVWNTQSG---F-CFVTF--TEHTSGVTAVQFTARGNVLLSSSLD------GTVRAWDLK 422 (893)
T ss_pred CCCcEEEeccCCC-----cEEEEeccCc---e-EEEEe--ccCCCceEEEEEEecCCEEEEeecC------CeEEeeeec
Confidence 3446777777654 4667776654 1 11111 2233444444331 22444433321 234555543
Q ss_pred CCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 371 MEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 371 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.- ...+... .|.|+...++++-..+.|++.|+.+ .-+|++++..
T Consensus 423 RY-rNfRTft---~P~p~QfscvavD~sGelV~AG~~d--------~F~IfvWS~q 466 (893)
T KOG0291|consen 423 RY-RNFRTFT---SPEPIQFSCVAVDPSGELVCAGAQD--------SFEIFVWSVQ 466 (893)
T ss_pred cc-ceeeeec---CCCceeeeEEEEcCCCCEEEeeccc--------eEEEEEEEee
Confidence 21 1333333 4555555555444334888888864 3566666666
No 210
>PTZ00421 coronin; Provisional
Probab=28.62 E-value=7e+02 Score=26.08 Aligned_cols=61 Identities=13% Similarity=-0.038 Sum_probs=31.1
Q ss_pred EEEEEcCCCCCcccCcEEEEecCCCCCceE-eccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCC
Q 042793 295 HLVVFGGCGRQGLLNDVFVLDLDAKPPTWR-EISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSME 372 (545)
Q Consensus 295 ~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~-~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 372 (545)
.+++.||.+ ..+.++|+.+. +-. .+... ... -.+.....++.+++.|+.+ ..+.+||+...
T Consensus 139 ~iLaSgs~D-----gtVrIWDl~tg--~~~~~l~~h--~~~--V~sla~spdG~lLatgs~D------g~IrIwD~rsg 200 (493)
T PTZ00421 139 NVLASAGAD-----MVVNVWDVERG--KAVEVIKCH--SDQ--ITSLEWNLDGSLLCTTSKD------KKLNIIDPRDG 200 (493)
T ss_pred CEEEEEeCC-----CEEEEEECCCC--eEEEEEcCC--CCc--eEEEEEECCCCEEEEecCC------CEEEEEECCCC
Confidence 466777654 35788998876 321 22211 111 1112222234666667653 24788996543
No 211
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=28.14 E-value=4.3e+02 Score=27.73 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=62.7
Q ss_pred CEEEEEcCC-CCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 241 NRVVLFGGE-GVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 241 ~~lyv~GG~-~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
..|+.+.-. +.++..+-+..+|+...+ +-+++.....|-+-. ..+++. ..+..+|+|-.+ .++-.||..+
T Consensus 219 ~qi~tVE~s~s~~g~~~~d~ciYE~~r~--klqrvsvtsipL~s~-v~~ca~sp~E~kLvlGC~D-----gSiiLyD~~~ 290 (545)
T PF11768_consen 219 YQIHTVEQSISVKGEPSADSCIYECSRN--KLQRVSVTSIPLPSQ-VICCARSPSEDKLVLGCED-----GSIILYDTTR 290 (545)
T ss_pred cEEEEEEEecCCCCCceeEEEEEEeecC--ceeEEEEEEEecCCc-ceEEecCcccceEEEEecC-----CeEEEEEcCC
Confidence 345555432 223345556677888766 666655444443322 222332 223566676544 3688999988
Q ss_pred CCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecC
Q 042793 319 KPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPV 381 (545)
Q Consensus 319 ~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 381 (545)
...++.+.+-. |.-.+ ...++.++++|+.. +++..||+..+.-.-+.+..
T Consensus 291 ~~t~~~ka~~~--P~~ia-----WHp~gai~~V~s~q------GelQ~FD~ALspi~~qLlsE 340 (545)
T PF11768_consen 291 GVTLLAKAEFI--PTLIA-----WHPDGAIFVVGSEQ------GELQCFDMALSPIKMQLLSE 340 (545)
T ss_pred Ceeeeeeeccc--ceEEE-----EcCCCcEEEEEcCC------ceEEEEEeecCccceeeccc
Confidence 74444433322 22111 22244777777632 46899997655444444443
No 212
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=27.82 E-value=6.9e+02 Score=25.79 Aligned_cols=50 Identities=18% Similarity=0.102 Sum_probs=29.2
Q ss_pred cEEEEecCCC--CCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 363 DTFLLDLSME--KPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 363 ~~~~~d~~~~--~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.+..||+... ...|.+.-. .| -.+-+++..+. .|++-=|. ...|+.||..
T Consensus 188 ~VtlwDv~g~sp~~~~~~~Hs--AP--~~gicfspsne-~l~vsVG~---------Dkki~~yD~~ 239 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHS--AP--CRGICFSPSNE-ALLVSVGY---------DKKINIYDIR 239 (673)
T ss_pred eEEEEeccCCCcccchhhhcc--CC--cCcceecCCcc-ceEEEecc---------cceEEEeecc
Confidence 4677775321 223444432 33 33445555655 77777676 3789999987
No 213
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=27.10 E-value=1.3e+02 Score=17.16 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=12.4
Q ss_pred ceEEEeCCCCCCceE
Q 042793 258 DTFVLDLNSSNPEWQ 272 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~ 272 (545)
.++.+|..+....|+
T Consensus 17 ~l~a~d~~~G~~~W~ 31 (33)
T smart00564 17 TLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEEcccCcEEEE
Confidence 799999988766776
No 214
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.85 E-value=5.8e+02 Score=24.54 Aligned_cols=113 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred ECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 239 VGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 239 ~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
+++.|++.-+.+..+- -+|.+|..+. .-+++. ..|.+.- +.+.+..+|-+ ..-..-.+.+.|||+.+
T Consensus 116 ~~D~LLlAR~DGh~nL---Gvy~ldr~~g--~~~~L~--~~ps~KG----~~~~D~a~F~i--~~~~~g~~~i~~~Dli~ 182 (339)
T PF09910_consen 116 YEDRLLLARADGHANL---GVYSLDRRTG--KAEKLS--SNPSLKG----TLVHDYACFGI--NNFHKGVSGIHCLDLIS 182 (339)
T ss_pred CcCEEEEEecCCccee---eeEEEcccCC--ceeecc--CCCCcCc----eEeeeeEEEec--cccccCCceEEEEEccC
Q ss_pred CCCce--Eecc-----CCCCCCCCccceEEEEcCCEEEEE--cCCCCCCCccCcEEEE
Q 042793 319 KPPTW--REIS-----GLAPPLPRSWHSSCTLDGTKLIVS--GGCADSGVLLSDTFLL 367 (545)
Q Consensus 319 ~~~~W--~~~~-----~~~~~~~r~~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~~~ 367 (545)
+ +| +..+ ...+...|..-.++...+ ++|.| ||.--......+-+.|
T Consensus 183 ~--~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~yn-R~faF~rGGi~vgnP~~~e~~~f 237 (339)
T PF09910_consen 183 G--KWVIESFDVSLSVDGGPVIRPELGAMASAYN-RLFAFVRGGIFVGNPYNGEEFRF 237 (339)
T ss_pred C--eEEEEecccccCCCCCceEeeccccEEEEee-eEEEEEeccEEEeCCCCCCceeE
No 215
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=25.99 E-value=1.1e+02 Score=17.64 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=13.3
Q ss_pred cceeEEEEcCCEEEEEcC
Q 042793 284 WGHTLSCVNGSHLVVFGG 301 (545)
Q Consensus 284 ~~~~~~~~~~~~iyv~GG 301 (545)
..|+++...++++|.+|-
T Consensus 8 ~~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 8 GYHTCALTSDGEVYCWGD 25 (30)
T ss_dssp SSEEEEEE-TTEEEEEE-
T ss_pred CCEEEEEEcCCCEEEEcC
Confidence 458888887889999985
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=25.86 E-value=6.1e+02 Score=24.50 Aligned_cols=111 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred cEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCC
Q 042793 399 RKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLH 478 (545)
Q Consensus 399 ~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 478 (545)
+.+-++||.....-. .+++.++| ..+=..+..+ .-+..--++.+..++|+|+
T Consensus 59 N~laLVGGg~~pky~---pNkviIWD----D~k~~~i~el-------------~f~~~I~~V~l~r~riVvv-------- 110 (346)
T KOG2111|consen 59 NYLALVGGGSRPKYP---PNKVIIWD----DLKERCIIEL-------------SFNSEIKAVKLRRDRIVVV-------- 110 (346)
T ss_pred ceEEEecCCCCCCCC---CceEEEEe----cccCcEEEEE-------------EeccceeeEEEcCCeEEEE--------
Q ss_pred CCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeeccC
Q 042793 479 SATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLVSK 545 (545)
Q Consensus 479 ~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~~~ 545 (545)
.-+.|++|.. ...-+.+.....-+.|..-.+.+...+..+++|=|.. ..+|.+.+|.+.
T Consensus 111 l~~~I~VytF---~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k-----~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 111 LENKIYVYTF---PDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK-----TGQVQIVDLAST 169 (346)
T ss_pred ecCeEEEEEc---CCChhheeeeecccCCCceEeecCCCCceEEEcCCCc-----cceEEEEEhhhc
No 217
>PRK10060 RNase II stability modulator; Provisional
Probab=25.62 E-value=24 Score=38.45 Aligned_cols=86 Identities=15% Similarity=0.061 Sum_probs=52.2
Q ss_pred eecCCcceeEEEEEEEeecCCCCEEEEEEEeeeeeecccCCCCCCchhHHHhhhhhhhhccccc-----CCCcccCCCC-
Q 042793 54 FRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEANVDLGPVPGYPVKEFLKSSERQRSFFSG-----NRTFPIGDRN- 127 (545)
Q Consensus 54 ~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~~~g~~~- 127 (545)
.+-+|+..|+.+...++.+. ...+..+...|+++.++ .+.+...+++.++++ +..+.+|...
T Consensus 68 ~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~v~~~~~~gI~i~D~~g~I~~ 135 (663)
T PRK10060 68 LTLDGEPLSVHLVGRKINKR--EWAGTASAWHDTPSVAR----------DLSHGLSFAEQVVSEANSVIVILDSRGNIQR 135 (663)
T ss_pred EEeCCcEEEEEEeeeccCcc--cccchhhHHHHHHHHHH----------HHHHHHHHHHHHHhhCCceEEEEeCCCCEEE
Confidence 46699999998866666432 23333444456665332 222233344444442 5666677664
Q ss_pred ccccccCcccc-hhhHHHHHhhccC
Q 042793 128 VCREVCGIFQL-SDEVISLKILSWL 151 (545)
Q Consensus 128 ~~~~~~~~~~l-p~~~~~~~~~~~l 151 (545)
+|++.+.+.|+ ++++++..+...+
T Consensus 136 ~N~a~~~l~Gy~~~eliG~~~~~l~ 160 (663)
T PRK10060 136 FNRLCEEYTGLKEHDVIGQSVFKLF 160 (663)
T ss_pred EcHHHHHHHCcCHHHHcCCCHHHHh
Confidence 89999999999 7888775555544
No 218
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=25.42 E-value=1.1e+02 Score=32.36 Aligned_cols=35 Identities=11% Similarity=0.322 Sum_probs=24.5
Q ss_pred eecCCcceeEEEEEEEee--cCCCCE--EEEEEEeeeeeec
Q 042793 54 FRKDGSPLMNRLRLSPIY--GDDETI--THVIGIQFFTEAN 90 (545)
Q Consensus 54 ~~kdG~~~w~~~~~~pi~--d~~g~~--~~~i~~~~Dite~ 90 (545)
...+|..++ +.+.||. +++|.. .+.|.+++|+++.
T Consensus 150 v~~~g~~~~--v~~~PI~~~d~~g~~~~~GaVivlrd~~~l 188 (520)
T PRK10820 150 VVINGQDFL--MEITPVYLQDENDQHVLVGAVVMLRSTARM 188 (520)
T ss_pred EEECCEEEE--EEEEeeeecCCCCceeEEEEEEEeccHHHH
Confidence 355687665 4567776 666653 7889999998853
No 219
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=25.40 E-value=72 Score=32.50 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=29.5
Q ss_pred eecCCcceeEEEEEEEeecCCCCEEEEEEEeeeeeecccCCCCCCchhH-HHhhhhhhhhccccc
Q 042793 54 FRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEANVDLGPVPGYPVK-EFLKSSERQRSFFSG 117 (545)
Q Consensus 54 ~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite~~~~~~~~~~~~~-~~~~~~~r~~~~~~~ 117 (545)
..++|. ++.+.+.|..+ + .++.+.+|||++++.+ +..+ ......|.+++-+.+
T Consensus 168 ~~~~~~--~~~~~~~~~~~--~---~~~~~~~dit~~~~~e----~~~~~~~~~isHelrtPL~~ 221 (430)
T PRK11006 168 VLNNGR--HLEIRVMPYTE--G---QLLMVARDVTQMHQLE----GARRNFFANVSHELRTPLTV 221 (430)
T ss_pred EcCCCC--EEEEEEEEcCC--C---cEEEEEehhhHHHHHH----HHHHHHHHHhHHHhcchHHH
Confidence 345554 55667777654 2 2567889999888431 1112 222255566655543
No 220
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=25.21 E-value=6.8e+02 Score=24.80 Aligned_cols=70 Identities=10% Similarity=0.087 Sum_probs=38.0
Q ss_pred CCcEEEEE--cccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCE--EEEEcC
Q 042793 397 GGRKILMF--GGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGR--ILIFGG 472 (545)
Q Consensus 397 ~~~~lyi~--GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~--l~v~GG 472 (545)
+++++|+. |+...... ...+.++++|.. + ++.+... +..+.-+......+++ +|+.-+
T Consensus 258 dg~~lyV~~~~~~~~thk--~~~~~V~ViD~~--t--~kvi~~i------------~vG~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHK--TASRFLFVVDAK--T--GKRLRKI------------ELGHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred CCCEEEEEecCCcccccc--CCCCEEEEEECC--C--CeEEEEE------------eCCCceeeEEECCCCCeEEEEeCC
Confidence 35589974 22211111 124799999977 3 5555543 3233333333333544 565544
Q ss_pred cCCCCCCCCceEEEcCCC
Q 042793 473 SVAGLHSATQLYLLDPTE 490 (545)
Q Consensus 473 ~~~~~~~~~~v~~~d~~~ 490 (545)
..+++.++|.++
T Consensus 320 ------~s~~VsViD~~t 331 (352)
T TIGR02658 320 ------GDKTLYIFDAET 331 (352)
T ss_pred ------CCCcEEEEECcC
Confidence 246799999974
No 221
>PF14830 Haemocyan_bet_s: Haemocyanin beta-sandwich; PDB: 1JS8_B 3QJO_A 1LNL_A.
Probab=24.58 E-value=72 Score=24.98 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=15.0
Q ss_pred EECCEEEEEcCCCCCCCccCceEEEeCC
Q 042793 238 AVGNRVVLFGGEGVNMQPMNDTFVLDLN 265 (545)
Q Consensus 238 ~~~~~lyv~GG~~~~~~~~~~~~~~d~~ 265 (545)
...+.++|+||...-.-.++.+|.||+.
T Consensus 34 ~~AG~F~vLGG~~EMpW~FdRlykydIT 61 (103)
T PF14830_consen 34 HKAGTFFVLGGEKEMPWAFDRLYKYDIT 61 (103)
T ss_dssp EEEEEEEE---TTS---B-SS-EEEE-H
T ss_pred eEccEEEEcCCCccCccccCccchhhHH
Confidence 5668899999975444467899999974
No 222
>PRK01742 tolB translocation protein TolB; Provisional
Probab=22.88 E-value=8.1e+02 Score=24.87 Aligned_cols=61 Identities=13% Similarity=0.250 Sum_probs=30.2
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEec
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIP 380 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 380 (545)
..++++|+.+. .-+.+... +. ........-+|++|++.... .+. .++|.+|+. +.....+.
T Consensus 228 ~~i~i~dl~tg--~~~~l~~~--~g-~~~~~~wSPDG~~La~~~~~--~g~--~~Iy~~d~~--~~~~~~lt 288 (429)
T PRK01742 228 SQLVVHDLRSG--ARKVVASF--RG-HNGAPAFSPDGSRLAFASSK--DGV--LNIYVMGAN--GGTPSQLT 288 (429)
T ss_pred cEEEEEeCCCC--ceEEEecC--CC-ccCceeECCCCCEEEEEEec--CCc--EEEEEEECC--CCCeEeec
Confidence 46899999887 54555433 11 11111222345455554322 111 358888864 33555554
No 223
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=22.33 E-value=1 Score=46.16 Aligned_cols=90 Identities=16% Similarity=-0.023 Sum_probs=54.2
Q ss_pred eecCCcceeEEEEEEEeecCCCCEEEEEEEeeeeeecccCCCCCCchhHHHhhhhhhhhccccc-----CCCcccCCCC-
Q 042793 54 FRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEANVDLGPVPGYPVKEFLKSSERQRSFFSG-----NRTFPIGDRN- 127 (545)
Q Consensus 54 ~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~~~g~~~- 127 (545)
+.+.+..+|...++.|..+..+....+.++.++++++++. .+++.+.++|++.++++ +..+.+|...
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~i~~~d~~g~i~~ 122 (430)
T PRK11006 50 LLRLSWWLWVDRSMTPPPGRGSWEPLFYGLYQMQLRNRKR-------RRELGNLIKRFRSGAESLPDAVVLTTEEGNIFW 122 (430)
T ss_pred HHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCCCeEEEEcCCCceeH
Confidence 4556666777766666665444222234455566655532 34555567778877764 5556666664
Q ss_pred ccccccCcccc-hhhHHHHHhhcc
Q 042793 128 VCREVCGIFQL-SDEVISLKILSW 150 (545)
Q Consensus 128 ~~~~~~~~~~l-p~~~~~~~~~~~ 150 (545)
+|++.+.+.|+ .+++.+..+...
T Consensus 123 ~N~~a~~l~g~~~~~~~g~~~~~~ 146 (430)
T PRK11006 123 CNGLAQQLLGFRWPEDNGQNILNL 146 (430)
T ss_pred HHHHHHHHhCCCChHhCCCcHHHH
Confidence 89999999998 455544434333
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=21.32 E-value=8.7e+02 Score=24.64 Aligned_cols=183 Identities=14% Similarity=0.206 Sum_probs=85.9
Q ss_pred CceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCc
Q 042793 257 NDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRS 336 (545)
Q Consensus 257 ~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~ 336 (545)
..+|++|+.+. +=+.+. ..+.. .......-++++|++....++ ..++|.+|..+. ..+++... . ...
T Consensus 220 ~~I~~~dl~~g--~~~~l~--~~~g~-~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~lt~~--~-~~~ 286 (427)
T PRK02889 220 PVVYVHDLATG--RRRVVA--NFKGS-NSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGS--GLRRLTQS--S-GID 286 (427)
T ss_pred cEEEEEECCCC--CEEEee--cCCCC-ccceEECCCCCEEEEEEccCC---CceEEEEECCCC--CcEECCCC--C-CCC
Confidence 36999999876 444442 12111 111111125556665443322 257899998877 55665432 1 111
Q ss_pred cceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEE-ECCcEEEEEcccCCCCCCcc
Q 042793 337 WHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSV-YGGRKILMFGGLAKSGPLRF 415 (545)
Q Consensus 337 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~-~~~~~lyi~GG~~~~~~~~~ 415 (545)
......-+|.+|++.... .+ ..++|.+++. +...+.+... ......... -+++.|+...... +
T Consensus 287 ~~~~wSpDG~~l~f~s~~--~g--~~~Iy~~~~~--~g~~~~lt~~----g~~~~~~~~SpDG~~Ia~~s~~~--g---- 350 (427)
T PRK02889 287 TEPFFSPDGRSIYFTSDR--GG--APQIYRMPAS--GGAAQRVTFT----GSYNTSPRISPDGKLLAYISRVG--G---- 350 (427)
T ss_pred cCeEEcCCCCEEEEEecC--CC--CcEEEEEECC--CCceEEEecC----CCCcCceEECCCCCEEEEEEccC--C----
Confidence 111223355556554322 11 1357888754 3356655421 111112222 2343555443221 1
Q ss_pred ccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 416 RSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 416 ~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
...++.+|+. +.+.+.+... . ....... ..+++.+++.....+ ...++.++.+
T Consensus 351 -~~~I~v~d~~--~g~~~~lt~~------------~--~~~~p~~-spdg~~l~~~~~~~g---~~~l~~~~~~ 403 (427)
T PRK02889 351 -AFKLYVQDLA--TGQVTALTDT------------T--RDESPSF-APNGRYILYATQQGG---RSVLAAVSSD 403 (427)
T ss_pred -cEEEEEEECC--CCCeEEccCC------------C--CccCceE-CCCCCEEEEEEecCC---CEEEEEEECC
Confidence 2478999987 5555555322 0 0111122 236666666553322 2457788874
No 225
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=21.19 E-value=7.4e+02 Score=23.80 Aligned_cols=137 Identities=15% Similarity=0.196 Sum_probs=66.5
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKP 320 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 320 (545)
+..+..||++. .+-.+|+.++ +-.++..-..|. |..|-+-.. .-.+++-|.++. .+-..|+...
T Consensus 84 gskVf~g~~Dk------~~k~wDL~S~--Q~~~v~~Hd~pv-kt~~wv~~~-~~~cl~TGSWDK-----TlKfWD~R~~- 147 (347)
T KOG0647|consen 84 GSKVFSGGCDK------QAKLWDLASG--QVSQVAAHDAPV-KTCHWVPGM-NYQCLVTGSWDK-----TLKFWDTRSS- 147 (347)
T ss_pred CceEEeeccCC------ceEEEEccCC--Ceeeeeecccce-eEEEEecCC-CcceeEeccccc-----ceeecccCCC-
Confidence 33444566543 6778899988 776664222222 222221111 112455555543 3455566544
Q ss_pred CceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcE
Q 042793 321 PTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRK 400 (545)
Q Consensus 321 ~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~ 400 (545)
..+..+..|...+ ++-+.. -+-+++-- -..+.+|++.........+. .|....--+++.+.++.
T Consensus 148 ---~pv~t~~LPeRvY--a~Dv~~--pm~vVata------~r~i~vynL~n~~te~k~~~---SpLk~Q~R~va~f~d~~ 211 (347)
T KOG0647|consen 148 ---NPVATLQLPERVY--AADVLY--PMAVVATA------ERHIAVYNLENPPTEFKRIE---SPLKWQTRCVACFQDKD 211 (347)
T ss_pred ---Ceeeeeeccceee--ehhccC--ceeEEEec------CCcEEEEEcCCCcchhhhhc---CcccceeeEEEEEecCC
Confidence 2344333343333 222221 23333211 13478888865555555544 23333333555566667
Q ss_pred EEEEcccCC
Q 042793 401 ILMFGGLAK 409 (545)
Q Consensus 401 lyi~GG~~~ 409 (545)
.|.+|+..+
T Consensus 212 ~~alGsiEG 220 (347)
T KOG0647|consen 212 GFALGSIEG 220 (347)
T ss_pred ceEeeeecc
Confidence 889988754
No 226
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=21.15 E-value=1.7e+02 Score=16.35 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=14.9
Q ss_pred cceEEEEecCCEEEEEcCcC
Q 042793 455 LDHVAVSLPGGRILIFGGSV 474 (545)
Q Consensus 455 ~~~~~~~~~~~~l~v~GG~~ 474 (545)
..|.-+++.+++..++|+.+
T Consensus 4 ~~H~K~~v~D~~~~~iGs~N 23 (28)
T smart00155 4 VLHTKLMIVDDEIAYIGSAN 23 (28)
T ss_pred cEEeEEEEEcCCEEEEeCcc
Confidence 45666666699999999865
No 227
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=21.15 E-value=1.9e+02 Score=29.88 Aligned_cols=64 Identities=11% Similarity=-0.088 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeeee
Q 042793 25 RHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEA 89 (545)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite 89 (545)
.|-++.--..+.-.+.+..|++.-.-++..+|+|+..|+..+...+.. .|..-.+|...+-.++
T Consensus 322 vH~~D~~y~Aeah~e~iktgeSGmlvyR~qtk~grw~wvqssarllyk-ngkPD~vi~thr~l~D 385 (712)
T KOG3560|consen 322 VHVEDKVYMAEAHSEGIKTGESGMLVYREQTKAGRWAWVQSSARLLYK-NGKPDLVIDTHRGLGD 385 (712)
T ss_pred eehhhhhhhhHHHHHHhhcCCcceEEEEEeecCCcEEEeeccceeeee-cCCCCEEEecCCCccc
Confidence 344333333455567778888777778889999999999887776664 5555555555554443
No 228
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=21.08 E-value=5.3e+02 Score=26.81 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=47.1
Q ss_pred CCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEe
Q 042793 356 DSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCV 435 (545)
Q Consensus 356 ~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v 435 (545)
+.+..++.++.+|+.++ . .+.. ..-....+.++....+ .+++++|..+.+. -.+..+|+. +.+-.+-
T Consensus 369 d~~~~ls~LvllD~~tg--~--~l~~-S~~~~Ir~r~~~~~~~-~~vaI~g~~G~~~-----ikLvlid~~--tLev~ke 435 (489)
T PF05262_consen 369 DPNHYLSELVLLDSDTG--D--TLKR-SPVNGIRGRTFYERED-DLVAIAGCSGNAA-----IKLVLIDPE--TLEVKKE 435 (489)
T ss_pred cCCCcceeEEEEeCCCC--c--eecc-cccceeccceeEEcCC-CEEEEeccCCchh-----eEEEecCcc--cceeeee
Confidence 34567889999996543 2 2221 1222344455555666 7888888854432 334444665 5444333
Q ss_pred ecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEE
Q 042793 436 TGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIF 470 (545)
Q Consensus 436 ~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~ 470 (545)
.. ...+..+.+.+.++.+|++
T Consensus 436 s~--------------~~i~~~S~l~~~~~~iyaV 456 (489)
T PF05262_consen 436 SE--------------DEISWQSSLIVDGQMIYAV 456 (489)
T ss_pred cc--------------ccccccCceEEcCCeEEEE
Confidence 22 2334444555556777744
No 229
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=20.93 E-value=43 Score=36.34 Aligned_cols=86 Identities=9% Similarity=0.111 Sum_probs=0.0
Q ss_pred EEEEEEEeecCCCCEEEEEEEee------------------eeeecccCCCCCCchhHHHhhhhhhhhccccc-----CC
Q 042793 63 NRLRLSPIYGDDETITHVIGIQF------------------FTEANVDLGPVPGYPVKEFLKSSERQRSFFSG-----NR 119 (545)
Q Consensus 63 ~~~~~~pi~d~~g~~~~~i~~~~------------------Dite~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~ 119 (545)
......||+|.+|++++++.+.. +|+++. ......++.....+.+..++++ +.
T Consensus 143 ~~c~aaPI~d~~G~liGvl~l~~~~~~~~~~~l~lv~~~a~~Ie~~l----~~~~~~~~~~~~~~~~~~il~~~~~gVl~ 218 (638)
T PRK11388 143 WAFCATPVFDSKGRLTGTIALACPVEQTSAADLPLTLSIAREVGNLL----LTDSLLAESNRHLNQLNALLESMDDGVIA 218 (638)
T ss_pred ceEEeeEEEcCCCCEEEEEEEEecccccChhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccCCcEEE
Q ss_pred CcccCCCC-ccccccCcccc-hhhHHHHHhhccCC
Q 042793 120 TFPIGDRN-VCREVCGIFQL-SDEVISLKILSWLS 152 (545)
Q Consensus 120 ~~~~g~~~-~~~~~~~~~~l-p~~~~~~~~~~~l~ 152 (545)
.+.+|... +|++.+.+++. .+++++..+...++
T Consensus 219 vD~~G~I~~~N~aa~~llg~s~~~l~G~~i~~l~~ 253 (638)
T PRK11388 219 WDEQGNLQFLNAQAARLLRLDATASQGRAITELLT 253 (638)
T ss_pred ECCCCeEehhhHHHHHHhCcCHHHHCCCcHHHHhc
No 230
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=20.09 E-value=7.6e+02 Score=23.51 Aligned_cols=157 Identities=17% Similarity=0.214 Sum_probs=0.0
Q ss_pred CceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEE
Q 042793 269 PEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKL 348 (545)
Q Consensus 269 ~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~i 348 (545)
+-|..++ ........--+....+++.+++|+. ..+..=|-.-+ +|.+... +..|+.+.++.+-+.+=
T Consensus 32 ~p~~~ve--lp~~s~~l~ia~~~~g~~gwlVg~r------gtiletdd~g~--tw~qal~---~~gr~~f~sv~f~~~eg 98 (339)
T COG4447 32 NPWTDVE--LPTLSPTLDIAFTESGSHGWLVGGR------GTILETDDGGI--TWAQALD---FLGRHAFHSVSFLGMEG 98 (339)
T ss_pred Ccceeee--ccccCcccceeEeecCcceEEEcCc------ceEEEecCCcc--cchhhhc---hhhhhheeeeeeecccc
Q ss_pred EEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCC
Q 042793 349 IVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEE 428 (545)
Q Consensus 349 yv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~ 428 (545)
++.|-- ..++.-+ ....+|.+++ .....+-.-.++..+++.+-+++|-. ..|+.-+-.
T Consensus 99 w~vGe~-------sqll~T~--DgGqsWARi~-~~e~~eg~~~sI~f~d~q~g~m~gd~----------Gail~T~Dg-- 156 (339)
T COG4447 99 WIVGEP-------SQLLHTT--DGGQSWARIP-LSEKLEGFPDSITFLDDQRGEMLGDQ----------GAILKTTDG-- 156 (339)
T ss_pred cccCCc-------ceEEEec--CCCcchhhch-hhcCCCCCcceeEEecchhhhhhccc----------ceEEEecCC--
Q ss_pred CCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEc
Q 042793 429 EPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFG 471 (545)
Q Consensus 429 ~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~G 471 (545)
...|+.+.... .+......-+... ++.++++|
T Consensus 157 Gk~Wk~l~e~~----------v~~~~~n~ia~s~-dng~vaVg 188 (339)
T COG4447 157 GKNWKALVEKA----------VGLAVPNEIARSA-DNGYVAVG 188 (339)
T ss_pred cccHhHhcccc----------cchhhhhhhhhhc-cCCeEEEe
Done!