Query 042793
Match_columns 545
No_of_seqs 441 out of 3775
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 16:44:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zgk_A Kelch-like ECH-associat 100.0 8.6E-42 2.9E-46 332.6 32.0 274 226-544 10-287 (308)
2 2uvk_A YJHT; unknown function, 100.0 1.2E-40 4.1E-45 331.7 30.0 283 226-545 5-343 (357)
3 2xn4_A Kelch-like protein 2; s 100.0 5.1E-40 1.7E-44 319.3 33.0 268 209-520 33-301 (302)
4 2xn4_A Kelch-like protein 2; s 100.0 8.8E-40 3E-44 317.6 34.5 267 235-544 10-276 (302)
5 1zgk_A Kelch-like ECH-associat 100.0 3.2E-40 1.1E-44 321.5 31.2 264 209-516 42-308 (308)
6 3ii7_A Kelch-like protein 7; p 100.0 8.2E-40 2.8E-44 318.4 34.0 262 240-544 11-272 (306)
7 3ii7_A Kelch-like protein 7; p 100.0 6E-40 2E-44 319.4 31.3 264 209-517 27-294 (306)
8 4asc_A Kelch repeat and BTB do 100.0 6.4E-41 2.2E-45 327.6 24.1 276 209-528 16-307 (315)
9 2vpj_A Kelch-like protein 12; 100.0 2.1E-39 7.1E-44 314.9 34.4 264 238-544 12-278 (301)
10 2woz_A Kelch repeat and BTB do 100.0 1.7E-40 5.7E-45 325.1 26.3 273 209-525 27-314 (318)
11 2vpj_A Kelch-like protein 12; 100.0 4.5E-39 1.5E-43 312.5 31.2 263 209-516 34-299 (301)
12 4asc_A Kelch repeat and BTB do 100.0 5.3E-38 1.8E-42 306.9 27.0 258 240-544 4-277 (315)
13 2zwa_A Leucine carboxyl methyl 100.0 1.9E-37 6.7E-42 332.6 30.4 288 226-545 384-695 (695)
14 2woz_A Kelch repeat and BTB do 100.0 5.9E-37 2E-41 299.9 28.8 266 229-544 7-287 (318)
15 2uvk_A YJHT; unknown function, 100.0 7E-36 2.4E-40 297.3 25.3 259 210-499 35-349 (357)
16 2zwa_A Leucine carboxyl methyl 100.0 2E-31 7E-36 285.9 24.1 260 209-489 415-693 (695)
17 1k3i_A Galactose oxidase precu 100.0 1.6E-31 5.5E-36 286.7 22.1 302 209-544 169-497 (656)
18 1k3i_A Galactose oxidase precu 100.0 4.8E-30 1.6E-34 275.3 20.5 284 209-528 222-531 (656)
19 1n9l_A PHOT-LOV1, putative blu 99.4 2.6E-12 8.7E-17 103.2 10.3 80 1-89 30-109 (109)
20 3ewk_A Sensor protein; PAS dom 99.4 1.1E-12 3.9E-17 120.6 8.7 137 1-153 23-162 (227)
21 2pr5_A Blue-light photorecepto 99.2 6.7E-11 2.3E-15 98.3 9.2 82 1-93 36-117 (132)
22 2gj3_A Nitrogen fixation regul 99.2 1.9E-10 6.3E-15 93.8 11.3 82 1-91 39-120 (120)
23 1p22_A F-BOX/WD-repeat protein 99.0 4.5E-08 1.5E-12 99.1 23.9 287 135-490 11-325 (435)
24 3mr0_A Sensory box histidine k 99.0 7.9E-10 2.7E-14 93.2 9.1 84 23-113 58-141 (142)
25 3t50_A Blue-light-activated hi 99.0 2.2E-09 7.5E-14 88.1 9.8 84 2-94 35-118 (128)
26 2ovr_B FBW7, F-BOX/WD repeat p 99.0 1.2E-07 3.9E-12 96.4 24.2 284 134-490 18-308 (445)
27 3f1p_A Endothelial PAS domain- 99.0 7.6E-10 2.6E-14 89.6 6.2 82 2-92 34-116 (117)
28 3p7n_A Sensor histidine kinase 98.9 1.6E-09 5.6E-14 101.4 8.0 82 2-92 101-182 (258)
29 3f1p_B ARYL hydrocarbon recept 98.9 3.1E-09 1E-13 86.5 8.4 82 2-92 37-120 (121)
30 3ue6_A Aureochrome1; PAS/LOV d 98.9 5.2E-09 1.8E-13 90.2 10.2 82 2-92 73-154 (166)
31 3h9w_A Diguanylate cyclase wit 98.9 2.8E-09 9.4E-14 85.9 7.7 70 24-93 43-112 (115)
32 4hia_A LOV protein; PAS, HTH, 98.9 1.5E-09 5E-14 95.0 6.5 83 2-93 45-127 (176)
33 4eet_B Phototropin-2; LOV, blu 98.9 1E-08 3.4E-13 81.9 10.5 81 2-91 35-115 (115)
34 2wkq_A NPH1-1, RAS-related C3 98.8 2.4E-08 8.4E-13 97.2 11.1 84 1-93 48-131 (332)
35 3v7d_B Cell division control p 98.7 1.7E-06 6E-11 88.0 24.0 48 135-183 15-63 (464)
36 3mqq_A Transcriptional regulat 98.7 7.8E-09 2.7E-13 83.9 4.6 82 2-93 37-119 (120)
37 2v0u_A NPH1-1, LOV2; kinase, t 98.7 1E-07 3.6E-12 79.1 11.1 82 2-92 40-121 (146)
38 3sw1_A Sensory box protein; li 98.6 6.2E-08 2.1E-12 83.0 8.4 83 2-93 63-145 (162)
39 1byw_A Protein (human ERG pota 98.6 2.6E-07 9E-12 72.2 11.0 80 2-90 29-110 (110)
40 3ewk_A Sensor protein; PAS dom 98.6 7.5E-08 2.5E-12 88.1 8.8 77 1-86 145-227 (227)
41 2vv6_A FIXL, sensor protein FI 98.6 5.2E-08 1.8E-12 78.9 6.8 82 1-93 27-112 (119)
42 3nja_A Probable ggdef family p 98.6 1.5E-07 5.3E-12 76.1 9.3 67 25-91 58-124 (125)
43 3lyx_A Sensory BOX/ggdef domai 98.6 2.1E-07 7.1E-12 74.7 9.4 81 3-92 43-123 (124)
44 2z6d_A Phototropin-2; PAS-fold 98.6 3.5E-07 1.2E-11 73.9 10.3 82 3-93 45-126 (130)
45 4eho_A Bacteriophytochrome, PA 98.5 3.8E-08 1.3E-12 104.0 3.8 82 2-93 553-634 (635)
46 3kx0_X Uncharacterized protein 98.4 3.2E-07 1.1E-11 80.8 7.5 100 6-117 75-179 (185)
47 3k3c_A Protein RV1364C/MT1410; 98.4 1.3E-07 4.5E-12 80.7 4.7 79 6-93 55-138 (158)
48 1fs1_A SKP2 F-BOX, cyclin A/CD 98.4 1.1E-07 3.9E-12 64.3 3.3 46 132-178 6-51 (53)
49 2kdk_A ARYL hydrocarbon recept 98.4 1.5E-06 5E-11 70.1 10.6 81 2-91 38-120 (121)
50 3d72_A Vivid PAS protein VVD; 98.4 1.2E-06 3.9E-11 73.8 9.5 85 2-86 63-149 (149)
51 3icy_A Sensor protein; sensory 98.4 1.1E-06 3.7E-11 70.3 8.8 65 24-88 54-118 (118)
52 2l0w_A Potassium voltage-gated 98.4 2.2E-06 7.7E-11 70.1 10.1 80 2-90 57-138 (138)
53 3luq_A Sensor protein; PAS, hi 98.2 6.5E-06 2.2E-10 65.0 9.4 76 2-88 38-114 (114)
54 2r78_A Sensor protein; sensory 98.2 5.6E-06 1.9E-10 66.5 8.1 73 1-88 45-117 (117)
55 4f3l_A Mclock, circadian locom 98.2 1.2E-06 4.2E-11 85.9 4.8 82 1-91 275-357 (361)
56 3mxq_A Sensor protein; PSI2, M 98.1 2.5E-06 8.6E-11 72.1 5.9 82 2-93 57-150 (152)
57 3q7m_A Lipoprotein YFGL, BAMB; 98.1 0.0017 5.9E-08 63.7 26.8 230 235-525 48-284 (376)
58 1d06_A Nitrogen fixation regul 98.0 7.6E-06 2.6E-10 67.0 6.9 77 1-88 50-130 (130)
59 3q7m_A Lipoprotein YFGL, BAMB; 98.0 0.0044 1.5E-07 60.7 27.9 200 234-498 97-304 (376)
60 4f3l_B BMAL1B; BHLH, PAS, circ 98.0 3.4E-06 1.1E-10 83.4 5.1 82 1-91 302-385 (387)
61 3mjq_A Uncharacterized protein 98.0 1.1E-05 3.8E-10 65.0 6.3 81 2-94 34-114 (126)
62 2e31_A FBS1, F-box only protei 97.9 4.3E-06 1.5E-10 77.8 3.5 50 133-183 49-99 (297)
63 3eeh_A Putative light and redo 97.9 2.2E-05 7.5E-10 62.7 7.0 59 29-88 67-125 (125)
64 1v9y_A Heme PAS sensor protein 97.8 2.5E-05 8.7E-10 66.4 6.2 81 2-93 75-159 (167)
65 3vol_A Aerotaxis transducer AE 97.7 2.4E-05 8E-10 71.6 4.1 73 2-93 69-141 (233)
66 3no2_A Uncharacterized protein 97.6 0.012 4E-07 55.0 22.0 224 240-525 4-230 (276)
67 3l2o_B F-box only protein 4; s 97.6 3E-05 1E-09 71.2 3.4 49 134-183 4-52 (312)
68 3dsm_A Uncharacterized protein 97.5 0.061 2.1E-06 51.4 26.5 249 231-543 44-301 (328)
69 3olo_A Two-component sensor hi 97.5 0.00011 3.9E-09 58.1 5.3 71 2-88 48-118 (118)
70 4hi4_A Aerotaxis transducer AE 97.4 0.00065 2.2E-08 54.5 8.9 70 2-90 52-121 (121)
71 2qkp_A Uncharacterized protein 97.3 0.00051 1.7E-08 57.7 7.6 79 4-93 58-136 (151)
72 3mfx_A Sensory BOX/ggdef famil 97.3 0.00021 7E-09 58.4 5.0 77 2-90 42-125 (129)
73 3mbr_X Glutamine cyclotransfer 97.3 0.084 2.9E-06 47.6 22.9 200 286-542 24-233 (243)
74 3rty_A Period circadian protei 97.3 0.0004 1.4E-08 66.7 7.8 82 1-91 178-265 (339)
75 4dj3_A Period circadian protei 97.2 0.0012 4.1E-08 62.7 9.7 80 1-89 198-281 (317)
76 2iwa_A Glutamine cyclotransfer 97.2 0.1 3.4E-06 48.0 21.7 204 286-543 24-236 (266)
77 3cax_A Uncharacterized protein 97.2 0.0012 3.9E-08 64.7 9.1 78 3-93 273-350 (369)
78 3dsm_A Uncharacterized protein 97.1 0.2 6.8E-06 47.8 26.5 187 256-490 16-212 (328)
79 3mbr_X Glutamine cyclotransfer 97.1 0.16 5.5E-06 45.8 23.3 156 232-427 22-179 (243)
80 3fg8_A Uncharacterized protein 97.0 0.0008 2.7E-08 53.6 5.2 72 2-90 47-118 (118)
81 1kb0_A Quinohemoprotein alcoho 97.0 0.11 3.8E-06 55.2 23.1 131 234-380 71-208 (677)
82 1kb0_A Quinohemoprotein alcoho 96.9 0.2 6.8E-06 53.2 24.6 127 292-436 76-208 (677)
83 3jrp_A Fusion protein of prote 96.9 0.16 5.4E-06 48.9 22.0 232 240-528 22-277 (379)
84 3bwl_A Sensor protein; structu 96.9 0.0033 1.1E-07 50.3 7.9 43 44-88 84-126 (126)
85 1ll8_A PAS kinase; PAS domain, 96.7 0.00047 1.6E-08 54.4 1.6 75 2-88 34-113 (114)
86 3nol_A Glutamine cyclotransfer 96.7 0.29 1E-05 44.5 20.1 194 291-542 50-254 (262)
87 2ovr_B FBW7, F-BOX/WD repeat p 96.6 0.27 9.3E-06 48.9 22.0 233 240-544 208-442 (445)
88 2vlg_A Sporulation kinase A; h 96.6 0.00098 3.3E-08 52.7 2.8 63 2-76 34-96 (111)
89 3vgz_A Uncharacterized protein 96.6 0.52 1.8E-05 44.8 25.7 196 240-489 100-302 (353)
90 2ad6_A Methanol dehydrogenase 96.6 0.4 1.4E-05 49.6 23.1 127 292-436 61-194 (571)
91 3jro_A Fusion protein of prote 96.5 0.13 4.6E-06 55.4 19.6 232 241-529 21-276 (753)
92 2ad6_A Methanol dehydrogenase 96.5 0.93 3.2E-05 46.9 25.2 131 234-380 56-194 (571)
93 3a0r_A Sensor protein; four he 96.5 0.0051 1.7E-07 59.5 7.6 100 2-117 43-149 (349)
94 3nok_A Glutaminyl cyclase; bet 96.5 0.1 3.4E-06 47.7 15.4 194 291-542 62-264 (268)
95 3u4y_A Uncharacterized protein 96.4 0.28 9.5E-06 46.3 19.8 152 240-426 51-206 (331)
96 1yiq_A Quinohemoprotein alcoho 96.4 1.2 4.2E-05 47.2 26.3 128 234-379 64-200 (689)
97 3scy_A Hypothetical bacterial 96.4 0.41 1.4E-05 45.9 21.1 111 243-371 15-129 (361)
98 1l0q_A Surface layer protein; 96.4 0.25 8.4E-06 48.0 19.4 183 241-489 2-188 (391)
99 3hfq_A Uncharacterized protein 96.4 0.18 6.2E-06 48.1 18.0 143 258-426 19-170 (347)
100 3b33_A Sensor protein; structu 96.3 0.0028 9.6E-08 49.7 4.0 73 2-88 42-115 (115)
101 3fc7_A HTR-like protein, senso 96.3 0.002 6.7E-08 51.3 2.9 71 2-88 54-125 (125)
102 1yiq_A Quinohemoprotein alcoho 96.2 1.1 3.8E-05 47.5 24.7 127 291-435 68-200 (689)
103 2hqs_A Protein TOLB; TOLB, PAL 96.2 0.77 2.6E-05 45.3 22.2 226 257-544 159-387 (415)
104 3gdi_A Period circadian protei 96.2 0.013 4.4E-07 55.4 8.5 82 1-91 189-273 (309)
105 3bws_A Protein LP49; two-domai 96.2 0.4 1.4E-05 47.2 20.2 148 240-426 180-333 (433)
106 1kv9_A Type II quinohemoprotei 96.2 1.4 4.6E-05 46.6 25.1 126 292-435 65-195 (668)
107 3nol_A Glutamine cyclotransfer 96.2 0.5 1.7E-05 43.0 18.4 153 234-427 46-201 (262)
108 1gxr_A ESG1, transducin-like e 96.2 0.7 2.4E-05 43.3 21.0 227 240-542 108-335 (337)
109 2xbg_A YCF48-like protein; pho 96.1 0.97 3.3E-05 42.9 26.1 243 215-526 24-268 (327)
110 1w6s_A Methanol dehydrogenase 96.1 0.83 2.8E-05 47.5 22.1 128 292-436 61-200 (599)
111 3a0s_A Sensor protein; PAS-fol 96.1 0.024 8.2E-07 41.7 7.9 69 2-86 27-96 (96)
112 1gxr_A ESG1, transducin-like e 96.0 0.91 3.1E-05 42.5 20.7 191 240-490 62-255 (337)
113 1ri6_A Putative isomerase YBHE 96.0 0.4 1.4E-05 45.2 18.1 157 241-434 5-166 (343)
114 3rty_A Period circadian protei 95.9 0.022 7.6E-07 54.5 8.8 93 57-160 99-202 (339)
115 1w6s_A Methanol dehydrogenase 95.9 1.9 6.7E-05 44.7 24.2 133 234-380 56-200 (599)
116 1kv9_A Type II quinohemoprotei 95.9 2.2 7.7E-05 45.0 26.1 131 234-380 60-196 (668)
117 4dj2_A Period circadian protei 95.9 0.0088 3E-07 56.8 5.6 82 1-91 200-284 (320)
118 3bws_A Protein LP49; two-domai 95.8 0.96 3.3E-05 44.4 21.0 186 258-490 102-292 (433)
119 3no2_A Uncharacterized protein 95.8 0.69 2.3E-05 42.7 18.3 181 294-528 5-185 (276)
120 3v9f_A Two-component system se 95.7 1.2 4E-05 48.1 22.6 215 258-528 428-647 (781)
121 3scy_A Hypothetical bacterial 95.7 1.2 4.2E-05 42.5 20.6 23 292-319 108-130 (361)
122 1flg_A Protein (quinoprotein e 95.7 2.4 8.1E-05 43.9 26.3 81 235-325 112-200 (582)
123 3hfq_A Uncharacterized protein 95.7 0.54 1.8E-05 44.8 17.7 66 240-317 50-116 (347)
124 1l0q_A Surface layer protein; 95.6 0.97 3.3E-05 43.7 19.7 187 240-489 43-232 (391)
125 2iwa_A Glutamine cyclotransfer 95.6 1.3 4.5E-05 40.5 23.2 207 234-489 24-236 (266)
126 3nok_A Glutaminyl cyclase; bet 95.5 0.5 1.7E-05 43.0 15.3 107 339-490 58-164 (268)
127 3jrp_A Fusion protein of prote 95.5 1.4 4.8E-05 42.0 20.1 205 241-499 69-295 (379)
128 4aez_A CDC20, WD repeat-contai 95.4 2.1 7.3E-05 41.6 22.8 133 258-426 114-247 (401)
129 1rwi_B Serine/threonine-protei 95.1 1.8 6.1E-05 39.1 23.3 229 240-544 34-264 (270)
130 3u4y_A Uncharacterized protein 95.1 2.2 7.4E-05 40.0 21.2 148 240-426 9-159 (331)
131 2xbg_A YCF48-like protein; pho 95.1 2.3 8E-05 40.2 25.7 243 216-525 66-310 (327)
132 3vgz_A Uncharacterized protein 95.0 2.4 8.2E-05 40.0 27.1 154 240-426 52-214 (353)
133 1flg_A Protein (quinoprotein e 95.0 3.8 0.00013 42.3 24.9 129 234-379 62-201 (582)
134 4a2l_A BT_4663, two-component 95.0 4.3 0.00015 43.8 24.0 212 258-528 428-650 (795)
135 2ojh_A Uncharacterized protein 94.9 2.2 7.4E-05 38.8 19.7 204 240-498 52-264 (297)
136 1ri6_A Putative isomerase YBHE 94.9 2.5 8.7E-05 39.5 21.4 211 240-499 49-271 (343)
137 4ery_A WD repeat-containing pr 94.8 2.6 8.9E-05 39.1 25.3 186 240-489 34-222 (312)
138 2dg1_A DRP35, lactonase; beta 94.4 3.3 0.00011 38.8 23.2 156 240-426 55-212 (333)
139 1nir_A Nitrite reductase; hemo 94.3 3.6 0.00012 42.1 20.4 61 240-319 148-212 (543)
140 1mzu_A PPR; photoactive yellow 94.3 0.13 4.6E-06 41.0 7.3 66 1-78 56-123 (129)
141 1nwz_A PYP, photoactive yellow 94.3 0.12 4E-06 41.2 6.8 66 1-78 51-118 (125)
142 1k8k_C P40, ARP2/3 complex 41 94.2 3.8 0.00013 38.8 24.0 108 240-369 63-171 (372)
143 4e54_B DNA damage-binding prot 94.2 2.3 7.8E-05 41.9 18.1 107 240-370 131-239 (435)
144 4aez_A CDC20, WD repeat-contai 94.1 4.5 0.00015 39.2 20.4 147 240-426 145-292 (401)
145 3zwl_B Eukaryotic translation 94.1 4 0.00014 38.4 20.3 67 241-319 86-152 (369)
146 4gqb_B Methylosome protein 50; 94.0 3.5 0.00012 39.2 18.3 105 293-426 138-245 (344)
147 2ast_B S-phase kinase-associat 94.0 0.014 4.6E-07 56.2 1.0 45 133-178 7-51 (336)
148 1nir_A Nitrite reductase; hemo 93.9 3.2 0.00011 42.5 18.9 247 240-544 190-458 (543)
149 4g56_B MGC81050 protein; prote 93.8 2.4 8.3E-05 40.5 17.0 185 293-544 150-343 (357)
150 3jro_A Fusion protein of prote 93.8 1.5 5E-05 47.1 16.9 205 241-498 67-292 (753)
151 2ojh_A Uncharacterized protein 93.8 3.7 0.00013 37.1 20.1 146 257-436 22-169 (297)
152 1p22_A F-BOX/WD-repeat protein 93.8 3.2 0.00011 40.8 18.3 187 235-489 177-364 (435)
153 3k26_A Polycomb protein EED; W 93.8 2.7 9.4E-05 39.7 17.3 61 241-319 85-148 (366)
154 2aq5_A Coronin-1A; WD40 repeat 93.7 5.4 0.00019 38.5 21.3 155 293-490 93-254 (402)
155 1r5m_A SIR4-interacting protei 93.6 5.6 0.00019 38.3 20.3 147 240-426 119-277 (425)
156 2xdw_A Prolyl endopeptidase; a 93.4 8.5 0.00029 40.7 21.9 193 258-489 152-367 (710)
157 1sq9_A Antiviral protein SKI8; 93.4 5.7 0.0002 38.0 21.6 20 464-489 302-321 (397)
158 3zwl_B Eukaryotic translation 93.4 5.3 0.00018 37.6 21.3 63 240-319 43-106 (369)
159 1k8k_C P40, ARP2/3 complex 41 93.3 5.5 0.00019 37.6 23.1 152 240-426 19-172 (372)
160 1qks_A Cytochrome CD1 nitrite 93.3 8.3 0.00028 39.6 22.1 192 240-491 166-374 (567)
161 2hqs_A Protein TOLB; TOLB, PAL 93.3 6.6 0.00023 38.4 20.2 202 240-498 189-393 (415)
162 3v9f_A Two-component system se 93.2 9.7 0.00033 40.8 22.1 154 240-437 460-619 (781)
163 2z3z_A Dipeptidyl aminopeptida 93.0 7.1 0.00024 41.1 20.4 193 309-544 235-435 (706)
164 3vl1_A 26S proteasome regulato 92.8 7.4 0.00025 37.6 22.5 104 293-426 108-211 (420)
165 3i2n_A WD repeat-containing pr 92.6 3.7 0.00013 38.6 16.1 194 241-489 31-242 (357)
166 3iuj_A Prolyl endopeptidase; h 92.6 12 0.00041 39.5 22.0 200 257-498 155-365 (693)
167 4a11_B DNA excision repair pro 92.5 6 0.0002 37.9 17.8 112 240-378 111-225 (408)
168 1jmx_B Amine dehydrogenase; ox 92.5 6.9 0.00023 36.5 19.9 64 240-319 10-75 (349)
169 2pm9_A Protein WEB1, protein t 92.4 5.1 0.00017 38.7 17.2 110 293-426 78-196 (416)
170 2pm9_A Protein WEB1, protein t 92.4 6 0.00021 38.1 17.7 109 294-426 178-293 (416)
171 3mkq_A Coatomer beta'-subunit; 92.3 12 0.00041 40.0 21.4 188 241-489 25-216 (814)
172 4g56_B MGC81050 protein; prote 92.3 3.5 0.00012 39.4 15.4 21 464-490 238-258 (357)
173 3vl1_A 26S proteasome regulato 92.0 9.2 0.00031 36.9 26.3 63 240-319 108-171 (420)
174 1q7f_A NHL, brain tumor CG1071 92.0 7 0.00024 35.5 27.6 225 240-525 40-268 (286)
175 1r5m_A SIR4-interacting protei 91.9 9.2 0.00031 36.7 20.8 146 291-489 215-360 (425)
176 4a2l_A BT_4663, two-component 91.9 14 0.00048 39.7 21.2 143 258-437 472-622 (795)
177 3dwl_C Actin-related protein 2 91.9 2.4 8.2E-05 40.5 13.8 152 240-426 22-176 (377)
178 3ei3_B DNA damage-binding prot 91.8 6.7 0.00023 37.5 17.1 146 295-490 87-236 (383)
179 2ecf_A Dipeptidyl peptidase IV 91.7 8.5 0.00029 40.8 19.2 74 463-543 295-368 (741)
180 2bkl_A Prolyl endopeptidase; m 91.6 11 0.00038 39.7 19.8 194 257-489 147-350 (695)
181 4e54_B DNA damage-binding prot 91.5 5.3 0.00018 39.2 16.2 105 295-426 133-239 (435)
182 4d9s_A UVB-resistance protein 91.4 11 0.00038 36.7 18.2 64 455-526 286-355 (406)
183 1sq9_A Antiviral protein SKI8; 91.4 10 0.00035 36.2 19.9 24 464-490 244-267 (397)
184 2hz6_A Endoplasmic reticulum t 91.3 0.16 5.5E-06 49.4 4.6 152 237-435 6-157 (369)
185 1got_B GT-beta; complex (GTP-b 91.2 10 0.00034 35.7 22.7 189 240-489 66-256 (340)
186 3ow8_A WD repeat-containing pr 91.1 9.9 0.00034 35.5 21.9 142 295-489 93-236 (321)
187 3mkq_A Coatomer beta'-subunit; 91.0 11 0.00038 40.3 19.4 190 240-489 66-258 (814)
188 3fm0_A Protein CIAO1; WDR39,SG 91.0 6 0.0002 37.4 15.5 161 240-437 27-189 (345)
189 2hz6_A Endoplasmic reticulum t 90.9 0.38 1.3E-05 46.7 6.9 153 289-498 5-157 (369)
190 2w0n_A Sensor protein DCUS; si 90.5 0.058 2E-06 41.7 0.4 47 37-88 72-118 (118)
191 1got_B GT-beta; complex (GTP-b 90.1 12 0.00042 35.0 21.7 225 240-529 108-334 (340)
192 1qks_A Cytochrome CD1 nitrite 89.9 19 0.00065 36.9 21.4 250 240-544 208-477 (567)
193 3dwl_C Actin-related protein 2 89.6 1.7 5.7E-05 41.7 10.3 151 294-489 23-176 (377)
194 3fm0_A Protein CIAO1; WDR39,SG 89.1 14 0.00047 34.8 16.3 158 293-498 27-187 (345)
195 2z2n_A Virginiamycin B lyase; 89.1 13 0.00043 33.7 27.2 228 240-544 67-295 (299)
196 2vdu_B TRNA (guanine-N(7)-)-me 89.0 18 0.00062 35.4 23.8 149 241-426 115-270 (450)
197 2qc5_A Streptogramin B lactona 89.0 13 0.00044 33.7 25.8 193 240-498 30-223 (300)
198 3c5m_A Oligogalacturonate lyas 88.7 13 0.00043 35.4 16.0 156 309-499 168-336 (396)
199 3azo_A Aminopeptidase; POP fam 88.5 23 0.00077 36.8 18.9 205 257-498 102-331 (662)
200 4f3l_B BMAL1B; BHLH, PAS, circ 88.2 0.23 8E-06 48.6 2.9 51 118-171 282-334 (387)
201 1q7f_A NHL, brain tumor CG1071 88.0 15 0.00051 33.2 25.7 191 240-489 88-279 (286)
202 2z3z_A Dipeptidyl aminopeptida 88.0 28 0.00097 36.4 20.7 113 362-498 235-350 (706)
203 2p1m_B Transport inhibitor res 87.9 0.19 6.7E-06 52.2 2.3 35 134-169 5-40 (594)
204 3f3f_A Nucleoporin SEH1; struc 87.6 17 0.00058 33.4 22.4 67 240-319 22-91 (351)
205 4gqb_B Methylosome protein 50; 87.6 19 0.00065 34.0 16.9 105 240-372 138-247 (344)
206 2aq5_A Coronin-1A; WD40 repeat 87.6 20 0.0007 34.3 19.2 155 240-426 93-253 (402)
207 2qc5_A Streptogramin B lactona 87.4 16 0.00056 33.0 26.7 226 240-543 72-299 (300)
208 1yr2_A Prolyl oligopeptidase; 87.4 18 0.00061 38.5 17.4 193 257-489 189-394 (741)
209 1pex_A Collagenase-3, MMP-13; 87.1 14 0.00049 32.0 16.5 149 235-426 28-191 (207)
210 3mmy_A MRNA export factor; mRN 86.9 20 0.00068 33.4 18.3 150 241-435 54-207 (368)
211 4f3l_A Mclock, circadian locom 86.8 0.59 2E-05 45.2 4.8 43 118-160 255-299 (361)
212 2bkl_A Prolyl endopeptidase; m 86.4 35 0.0012 35.8 22.1 226 239-500 78-315 (695)
213 3fvz_A Peptidyl-glycine alpha- 86.2 22 0.00074 33.2 30.1 238 257-544 69-322 (329)
214 4aow_A Guanine nucleotide-bind 86.1 21 0.00071 32.9 19.5 22 517-544 316-337 (340)
215 1itv_A MMP9; adaptive molecula 86.0 16 0.00054 31.4 14.7 153 235-426 11-173 (195)
216 3k26_A Polycomb protein EED; W 86.0 22 0.00075 33.1 18.2 104 295-426 86-191 (366)
217 1jmx_B Amine dehydrogenase; ox 86.0 21 0.00071 33.1 15.5 65 293-372 10-75 (349)
218 3sfz_A APAF-1, apoptotic pepti 85.8 52 0.0018 37.2 21.2 62 240-319 626-689 (1249)
219 2ykf_A Pdtas, probable sensor 85.8 0.16 5.3E-06 48.0 0.0 33 61-94 258-290 (305)
220 2ynn_A Coatomer subunit beta'; 85.6 21 0.00073 32.6 17.3 187 240-489 66-258 (304)
221 3sfz_A APAF-1, apoptotic pepti 85.4 23 0.00079 40.1 18.0 186 240-490 972-1158(1249)
222 1oj5_A Steroid receptor coacti 85.4 0.53 1.8E-05 37.4 2.9 77 5-91 36-116 (132)
223 1qhu_A Protein (hemopexin); be 85.4 31 0.001 34.2 22.8 59 240-319 158-216 (460)
224 2z2n_A Virginiamycin B lyase; 85.4 21 0.00071 32.2 26.2 186 240-488 25-211 (299)
225 1yfq_A Cell cycle arrest prote 85.4 23 0.00078 32.7 20.3 105 240-370 22-130 (342)
226 4a11_B DNA excision repair pro 85.0 27 0.00091 33.1 17.5 61 242-319 157-219 (408)
227 3ogk_B Coronatine-insensitive 84.6 0.35 1.2E-05 50.2 2.1 33 136-169 14-47 (592)
228 3i2n_A WD repeat-containing pr 84.4 20 0.00067 33.3 14.5 155 293-490 30-199 (357)
229 3v7d_B Cell division control p 84.1 33 0.0011 33.5 24.7 101 347-490 281-381 (464)
230 2pm7_B Protein transport prote 84.0 25 0.00086 32.0 22.2 26 295-327 68-93 (297)
231 3azo_A Aminopeptidase; POP fam 84.0 32 0.0011 35.7 17.1 196 256-498 160-375 (662)
232 2jhe_A Transcription regulator 83.5 0.4 1.4E-05 41.2 1.7 33 57-91 153-189 (190)
233 3ba0_A Macrophage metalloelast 83.5 32 0.0011 32.9 15.2 153 235-426 185-349 (365)
234 3hxj_A Pyrrolo-quinoline quino 83.1 16 0.00056 33.6 13.2 133 258-435 41-173 (330)
235 1rwi_B Serine/threonine-protei 82.6 26 0.00087 31.1 20.6 146 292-489 33-179 (270)
236 2pm7_B Protein transport prote 82.6 28 0.00097 31.6 18.9 30 463-499 264-293 (297)
237 3ow8_A WD repeat-containing pr 82.4 31 0.0011 31.9 22.8 218 241-529 92-312 (321)
238 2xyi_A Probable histone-bindin 81.8 21 0.00071 34.8 13.8 19 296-319 196-214 (430)
239 4ery_A WD repeat-containing pr 81.4 32 0.0011 31.4 24.7 189 240-490 76-268 (312)
240 1yfq_A Cell cycle arrest prote 81.3 33 0.0011 31.5 22.9 139 240-407 67-214 (342)
241 2dg1_A DRP35, lactonase; beta 81.1 34 0.0012 31.5 15.7 123 345-498 55-177 (333)
242 2ykf_A Pdtas, probable sensor 82.0 0.31 1.1E-05 45.9 0.0 28 63-91 111-139 (305)
243 3g4e_A Regucalcin; six bladed 80.9 33 0.0011 31.3 19.7 149 240-426 24-179 (297)
244 1pby_B Quinohemoprotein amine 80.9 34 0.0012 31.3 19.1 106 241-371 46-163 (337)
245 2xdw_A Prolyl endopeptidase; a 80.7 60 0.002 34.1 23.6 150 257-426 208-367 (710)
246 4gga_A P55CDC, cell division c 80.6 40 0.0014 32.5 15.4 92 309-426 125-217 (420)
247 4gga_A P55CDC, cell division c 80.4 43 0.0015 32.3 22.1 92 258-371 126-218 (420)
248 3iz6_a 40S ribosomal protein R 79.8 42 0.0014 31.8 26.7 192 295-530 171-367 (380)
249 3mmy_A MRNA export factor; mRN 79.7 39 0.0013 31.3 17.3 102 295-427 55-160 (368)
250 3iuj_A Prolyl endopeptidase; h 79.3 65 0.0022 33.7 21.0 162 309-500 155-325 (693)
251 4aow_A Guanine nucleotide-bind 79.3 38 0.0013 31.0 18.1 21 463-489 225-245 (340)
252 3pe7_A Oligogalacturonate lyas 79.2 43 0.0015 31.6 19.4 112 309-437 168-281 (388)
253 3iz6_a 40S ribosomal protein R 78.8 45 0.0016 31.6 21.8 21 463-489 259-279 (380)
254 3bwl_A Sensor protein; structu 78.7 0.12 4.2E-06 40.6 -3.2 60 86-152 1-69 (126)
255 1vyh_C Platelet-activating fac 78.5 49 0.0017 31.8 22.7 143 241-426 120-264 (410)
256 3c5m_A Oligogalacturonate lyas 77.8 47 0.0016 31.3 15.9 158 257-437 168-337 (396)
257 2ecf_A Dipeptidyl peptidase IV 77.7 73 0.0025 33.4 19.9 109 310-435 264-374 (741)
258 1pjx_A Dfpase, DIISOPROPYLFLUO 77.4 42 0.0014 30.4 23.1 142 258-426 47-206 (314)
259 1d06_A Nitrogen fixation regul 77.3 0.38 1.3E-05 38.1 -0.6 55 101-155 8-69 (130)
260 3ju4_A Endo-N-acetylneuraminid 77.3 53 0.0018 31.5 25.1 203 259-474 260-482 (670)
261 3pe7_A Oligogalacturonate lyas 76.9 50 0.0017 31.1 18.2 53 309-372 60-112 (388)
262 2vdu_B TRNA (guanine-N(7)-)-me 76.9 55 0.0019 31.9 15.2 63 241-319 210-272 (450)
263 2ynn_A Coatomer subunit beta'; 76.4 45 0.0016 30.3 18.2 145 294-490 25-172 (304)
264 1gen_A Gelatinase A; hydrolase 76.4 39 0.0013 29.5 16.1 155 235-426 35-201 (218)
265 3ott_A Two-component system se 76.0 84 0.0029 33.2 21.6 105 345-490 482-586 (758)
266 1pex_A Collagenase-3, MMP-13; 75.6 39 0.0013 29.2 15.8 150 293-489 33-191 (207)
267 3hxj_A Pyrrolo-quinoline quino 75.5 49 0.0017 30.3 20.5 210 238-528 105-314 (330)
268 4h5i_A Guanine nucleotide-exch 74.0 60 0.0021 30.6 16.4 54 463-529 279-334 (365)
269 2xyi_A Probable histone-bindin 73.9 53 0.0018 31.8 14.1 19 466-490 291-309 (430)
270 3dm0_A Maltose-binding peripla 73.6 90 0.0031 32.5 20.7 21 463-489 571-591 (694)
271 3bg1_A Protein SEC13 homolog; 72.8 57 0.002 29.9 16.9 61 295-370 72-135 (316)
272 2hes_X YDR267CP; beta-propelle 72.6 60 0.0021 30.0 21.1 164 240-438 24-193 (330)
273 3g4e_A Regucalcin; six bladed 72.0 58 0.002 29.5 15.1 147 258-433 74-233 (297)
274 1su3_A Interstitial collagenas 71.9 68 0.0023 31.6 14.0 151 235-426 267-431 (450)
275 3ei3_B DNA damage-binding prot 71.4 68 0.0023 30.1 24.1 189 242-490 87-282 (383)
276 1yr2_A Prolyl oligopeptidase; 71.4 1.1E+02 0.0036 32.3 21.9 224 239-499 117-359 (741)
277 1erj_A Transcriptional repress 71.3 72 0.0025 30.3 18.3 103 240-371 134-238 (393)
278 3odt_A Protein DOA1; ubiquitin 70.2 61 0.0021 29.1 17.0 63 291-370 27-89 (313)
279 3p7n_A Sensor histidine kinase 69.7 0.51 1.7E-05 42.9 -1.9 87 68-155 23-119 (258)
280 2hes_X YDR267CP; beta-propelle 69.4 70 0.0024 29.5 17.5 164 291-499 22-191 (330)
281 3ott_A Two-component system se 69.4 1.2E+02 0.004 32.1 17.4 144 240-426 482-625 (758)
282 1pjx_A Dfpase, DIISOPROPYLFLUO 67.9 70 0.0024 28.9 17.6 153 241-426 83-255 (314)
283 3lrv_A PRE-mRNA-splicing facto 67.4 78 0.0027 29.2 18.2 65 240-319 138-202 (343)
284 3bg1_A Protein SEC13 homolog; 66.4 79 0.0027 28.9 15.7 31 463-500 272-302 (316)
285 3c75_H MADH, methylamine dehyd 66.3 1E+02 0.0034 30.1 17.8 115 240-370 84-208 (426)
286 3c7x_A Matrix metalloproteinas 65.9 63 0.0022 27.6 15.1 109 344-489 60-174 (196)
287 2pbi_B Guanine nucleotide-bind 65.5 89 0.003 29.2 20.0 64 240-319 75-138 (354)
288 1pby_B Quinohemoprotein amine 65.4 80 0.0027 28.6 14.7 54 309-372 11-66 (337)
289 3c7x_A Matrix metalloproteinas 64.3 68 0.0023 27.4 14.4 153 235-426 10-174 (196)
290 1pgu_A Actin interacting prote 63.7 1.3E+02 0.0043 30.3 18.3 20 464-489 263-282 (615)
291 2mad_H Methylamine dehydrogena 63.6 1E+02 0.0035 29.2 23.7 271 240-544 32-350 (373)
292 1xfd_A DIP, dipeptidyl aminope 62.6 1.5E+02 0.0051 30.8 19.3 77 240-327 71-150 (723)
293 3sjl_D Methylamine dehydrogena 62.4 1.1E+02 0.0038 29.3 16.0 115 240-370 44-168 (386)
294 3hrp_A Uncharacterized protein 60.7 1.2E+02 0.0042 29.1 27.5 151 240-426 141-297 (409)
295 3oyo_A Hemopexin fold protein 59.5 74 0.0025 27.9 10.4 112 344-489 69-197 (225)
296 3oyo_A Hemopexin fold protein 58.5 65 0.0022 28.2 9.8 107 239-370 69-197 (225)
297 4dj2_A Period circadian protei 58.2 12 0.00041 35.1 5.3 51 118-171 180-232 (320)
298 3f3f_A Nucleoporin SEH1; struc 54.9 86 0.003 28.3 11.0 66 398-490 22-90 (351)
299 1qhu_A Protein (hemopexin); be 54.5 1.7E+02 0.0058 28.8 23.9 57 345-426 158-214 (460)
300 3gre_A Serine/threonine-protei 54.4 1.5E+02 0.0051 28.2 13.4 63 346-426 182-244 (437)
301 3odt_A Protein DOA1; ubiquitin 54.1 1.2E+02 0.0041 27.0 22.1 20 464-490 236-255 (313)
302 3gdi_A Period circadian protei 53.5 18 0.00061 33.7 5.6 43 119-161 170-214 (309)
303 3dm0_A Maltose-binding peripla 52.6 2.1E+02 0.0073 29.5 17.2 20 295-319 396-415 (694)
304 1itv_A MMP9; adaptive molecula 52.4 1.1E+02 0.0037 26.0 13.7 155 288-489 12-173 (195)
305 1n7d_A LDL receptor, low-densi 50.6 2.4E+02 0.0082 29.5 16.6 197 234-489 409-613 (699)
306 3ba0_A Macrophage metalloelast 50.4 1.7E+02 0.0059 27.7 15.5 111 345-489 236-349 (365)
307 3hx6_A Type 4 fimbrial biogene 50.2 1.9E+02 0.0065 29.3 12.6 34 465-498 207-240 (570)
308 2r78_A Sensor protein; sensory 49.6 1.9 6.4E-05 33.2 -1.6 44 104-147 6-56 (117)
309 4hfx_A Transcription elongatio 49.6 9.9 0.00034 28.3 2.4 68 136-214 11-78 (97)
310 3kci_A Probable E3 ubiquitin-p 49.4 1.8E+02 0.0061 27.7 12.4 19 389-407 274-292 (389)
311 3e5z_A Putative gluconolactona 49.3 1.4E+02 0.0049 26.6 23.5 191 241-489 40-245 (296)
312 2ghs_A AGR_C_1268P; regucalcin 48.5 1.6E+02 0.0056 26.9 23.7 147 241-426 61-209 (326)
313 2ghs_A AGR_C_1268P; regucalcin 47.5 1.7E+02 0.0058 26.8 12.0 65 399-499 61-125 (326)
314 3lrv_A PRE-mRNA-splicing facto 47.0 1.7E+02 0.0059 26.8 23.0 105 294-426 139-243 (343)
315 1ck7_A Protein (gelatinase A); 46.4 2.4E+02 0.0081 29.1 13.0 156 235-426 448-614 (631)
316 1w8o_A Bacterial sialidase; 3D 44.7 2.7E+02 0.0091 28.3 16.9 58 371-436 197-254 (601)
317 2fp8_A Strictosidine synthase; 44.7 1.8E+02 0.0062 26.4 22.4 211 286-544 83-313 (322)
318 2p9w_A MAL S 1 allergenic prot 43.3 2.1E+02 0.0072 26.7 14.5 101 256-370 99-214 (334)
319 2vlg_A Sporulation kinase A; h 42.4 6.5 0.00022 30.1 0.5 39 121-159 16-56 (111)
320 1vyh_C Platelet-activating fac 42.1 2.3E+02 0.0079 26.9 19.6 142 295-489 121-264 (410)
321 2pbi_B Guanine nucleotide-bind 42.0 2.1E+02 0.0073 26.4 19.2 137 347-529 211-348 (354)
322 3f1p_B ARYL hydrocarbon recept 41.8 5.8 0.0002 30.3 0.2 41 118-158 16-58 (121)
323 1xfd_A DIP, dipeptidyl aminope 41.7 3.1E+02 0.011 28.2 19.6 66 258-328 38-108 (723)
324 3fvz_A Peptidyl-glycine alpha- 41.7 2.1E+02 0.0071 26.2 24.3 150 309-489 69-226 (329)
325 4d9s_A UVB-resistance protein 40.1 2.6E+02 0.0087 26.8 24.5 65 455-526 234-303 (406)
326 1npe_A Nidogen, entactin; glyc 39.7 1.9E+02 0.0066 25.3 24.7 194 234-489 39-237 (267)
327 3o4h_A Acylamino-acid-releasin 39.7 3E+02 0.01 27.5 16.7 113 295-436 76-191 (582)
328 1hxn_A Hemopexin, HPX; heme, b 39.1 1.9E+02 0.0065 25.0 15.5 148 239-426 27-196 (219)
329 3e5z_A Putative gluconolactona 38.1 2.1E+02 0.0073 25.3 20.1 158 240-436 79-253 (296)
330 3lp9_A LS-24; SEED albumin, pl 38.1 94 0.0032 27.2 7.5 107 238-370 70-200 (227)
331 1jof_A Carboxy-CIS,CIS-muconat 37.7 2.5E+02 0.0086 26.0 18.0 21 292-319 50-71 (365)
332 2p4o_A Hypothetical protein; p 37.5 2.3E+02 0.0079 25.5 25.4 198 234-489 35-241 (306)
333 3b7f_A Glycosyl hydrolase, BNR 37.3 2.7E+02 0.0092 26.3 20.9 108 258-380 32-154 (394)
334 3eeh_A Putative light and redo 36.7 10 0.00034 28.3 0.8 54 104-157 6-69 (125)
335 2fp8_A Strictosidine synthase; 36.5 2.4E+02 0.0084 25.5 19.3 211 234-489 83-312 (322)
336 4ggc_A P55CDC, cell division c 36.1 2.3E+02 0.0079 25.1 19.0 22 240-267 78-99 (318)
337 1p0z_A Sensor kinase CITA; tra 35.3 98 0.0034 24.0 6.7 28 62-89 100-127 (131)
338 3f1p_A Endothelial PAS domain- 35.0 10 0.00034 28.6 0.6 41 118-158 13-55 (117)
339 3olo_A Two-component sensor hi 34.9 4.1 0.00014 30.7 -1.8 36 118-153 27-64 (118)
340 1su3_A Interstitial collagenas 34.0 3.4E+02 0.012 26.5 15.6 150 288-489 268-431 (450)
341 4fj6_A Glycoside hydrolase fam 33.9 3E+02 0.01 27.6 11.3 136 371-525 360-503 (523)
342 1hxn_A Hemopexin, HPX; heme, b 33.3 2.4E+02 0.0081 24.4 15.0 105 293-426 28-143 (219)
343 4ggc_A P55CDC, cell division c 32.7 2.6E+02 0.0089 24.7 19.3 53 258-319 46-99 (318)
344 4dah_A Sporulation kinase D; a 32.3 80 0.0027 27.0 6.2 53 35-89 99-151 (217)
345 3o4h_A Acylamino-acid-releasin 32.2 3.9E+02 0.013 26.6 15.6 58 419-498 133-190 (582)
346 2be1_A Serine/threonine-protei 31.5 62 0.0021 30.5 5.5 109 258-380 21-139 (339)
347 3hrp_A Uncharacterized protein 30.8 3.6E+02 0.012 25.7 23.7 157 292-489 140-297 (409)
348 3dw8_B Serine/threonine-protei 30.7 3.5E+02 0.012 25.5 20.8 22 240-267 39-60 (447)
349 3of7_A Regulator of chromosome 29.5 4.1E+02 0.014 25.9 18.1 19 389-407 266-284 (473)
350 2cn3_A Xyloglucanase, beta-1,4 29.2 4.8E+02 0.016 27.3 12.7 104 268-379 231-343 (737)
351 3kci_A Probable E3 ubiquitin-p 28.2 3.9E+02 0.013 25.2 16.7 66 336-407 116-186 (389)
352 3dr2_A Exported gluconolactona 27.7 3.3E+02 0.011 24.3 20.4 155 240-426 56-223 (305)
353 3of7_A Regulator of chromosome 27.5 4.4E+02 0.015 25.7 11.5 65 455-526 213-283 (473)
354 1pgu_A Actin interacting prote 26.5 4.8E+02 0.016 25.8 16.6 52 258-319 468-520 (615)
355 3gre_A Serine/threonine-protei 26.5 4.1E+02 0.014 25.0 13.2 64 240-319 181-246 (437)
356 3dr2_A Exported gluconolactona 26.4 3.5E+02 0.012 24.1 11.5 56 257-319 169-225 (305)
357 1k32_A Tricorn protease; prote 25.9 6.8E+02 0.023 27.3 17.9 139 309-489 317-460 (1045)
358 3mxq_A Sensor protein; PSI2, M 24.9 13 0.00043 30.5 -0.5 51 103-153 16-73 (152)
359 1fwx_A Nitrous oxide reductase 24.3 5.8E+02 0.02 26.0 12.1 77 240-326 101-192 (595)
360 2p4o_A Hypothetical protein; p 24.1 3.9E+02 0.013 23.9 19.7 154 240-426 82-241 (306)
361 1a12_A RCC1, regulator of chro 23.2 4.9E+02 0.017 24.7 21.2 65 455-527 295-364 (413)
362 3lif_A Putative diguanylate cy 22.9 2.7E+02 0.0093 24.1 8.2 52 35-88 99-152 (254)
363 2ymu_A WD-40 repeat protein; u 22.9 5.5E+02 0.019 25.2 21.8 21 463-489 477-497 (577)
364 2p9w_A MAL S 1 allergenic prot 22.9 4.6E+02 0.016 24.4 19.2 184 308-528 99-305 (334)
365 2gop_A Trilobed protease; beta 22.7 4.2E+02 0.014 23.8 18.1 60 256-328 42-102 (347)
366 1erj_A Transcriptional repress 22.6 4.7E+02 0.016 24.3 20.9 102 345-489 134-237 (393)
367 1gen_A Gelatinase A; hydrolase 22.5 3.7E+02 0.013 23.1 17.5 156 289-489 37-201 (218)
368 3tc9_A Hypothetical hydrolase; 21.9 5.3E+02 0.018 24.7 15.9 150 293-489 149-300 (430)
369 3sjl_D Methylamine dehydrogena 21.3 1.5E+02 0.0051 28.4 6.2 69 240-319 291-364 (386)
370 1n7d_A LDL receptor, low-densi 21.3 7E+02 0.024 25.8 18.1 178 258-489 387-570 (699)
371 1so7_A Sialidase 2; neuraminid 21.1 1.9E+02 0.0063 27.4 7.0 54 320-380 205-261 (382)
372 3mvd_K Regulator of chromosome 21.0 5.4E+02 0.019 24.4 14.3 64 455-526 136-205 (423)
373 4dj3_A Period circadian protei 21.0 31 0.0011 32.2 1.2 44 119-162 179-224 (317)
374 1nr0_A Actin interacting prote 20.7 3.9E+02 0.013 27.0 9.9 21 463-489 501-521 (611)
375 2oiz_A Aromatic amine dehydrog 20.2 3.3E+02 0.011 25.2 8.6 65 240-319 265-335 (361)
No 1
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=8.6e-42 Score=332.59 Aligned_cols=274 Identities=16% Similarity=0.186 Sum_probs=228.0
Q ss_pred CCCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCC---
Q 042793 226 TVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGC--- 302 (545)
Q Consensus 226 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~--- 302 (545)
+.|++|..|+++.++++||+|||. ....++++++||+.++ +|+.++ ++|.+|.+|+++++ +++|||+||.
T Consensus 10 ~~~~~~~~~~~~~~~~~i~v~GG~--~~~~~~~~~~~d~~~~--~W~~~~--~~p~~r~~~~~~~~-~~~lyv~GG~~~~ 82 (308)
T 1zgk_A 10 SSGLVPRGSHAPKVGRLIYTAGGY--FRQSLSYLEAYNPSNG--TWLRLA--DLQVPRSGLAGCVV-GGLLYAVGGRNNS 82 (308)
T ss_dssp -----------CCCCCCEEEECCB--SSSBCCCEEEEETTTT--EEEECC--CCSSCCBSCEEEEE-TTEEEEECCEEEE
T ss_pred cCCeeeCCccccCCCCEEEEEeCc--CCCCcceEEEEcCCCC--eEeECC--CCCcccccceEEEE-CCEEEEECCCcCC
Confidence 457789999999999999999998 3567889999999998 999885 88999999998877 5599999998
Q ss_pred -CCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecC
Q 042793 303 -GRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPV 381 (545)
Q Consensus 303 -~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 381 (545)
......+++++||+.++ +|+.++++ |.+|..|+++.+ +++|||+||... ...++++++||+. +++|+.++.
T Consensus 83 ~~~~~~~~~~~~~d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~-~~~~~~~~~yd~~--~~~W~~~~~ 154 (308)
T 1zgk_A 83 PDGNTDSSALDCYNPMTN--QWSPCAPM--SVPRNRIGVGVI-DGHIYAVGGSHG-CIHHNSVERYEPE--RDEWHLVAP 154 (308)
T ss_dssp TTEEEECCCEEEEETTTT--EEEECCCC--SSCCBTCEEEEE-TTEEEEECCEET-TEECCCEEEEETT--TTEEEECCC
T ss_pred CCCCeecceEEEECCCCC--eEeECCCC--CcCccccEEEEE-CCEEEEEcCCCC-CcccccEEEECCC--CCeEeECCC
Confidence 44457899999999999 99999988 889999999988 459999999754 3467899999954 669999976
Q ss_pred CCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEE
Q 042793 382 TWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVS 461 (545)
Q Consensus 382 ~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~ 461 (545)
+|.+|.+|+++.+++ +||++||...... .++++.||+. +++|+.+..+ |.+|..|++++
T Consensus 155 --~p~~r~~~~~~~~~~-~iyv~GG~~~~~~----~~~~~~yd~~--~~~W~~~~~~------------p~~r~~~~~~~ 213 (308)
T 1zgk_A 155 --MLTRRIGVGVAVLNR-LLYAVGGFDGTNR----LNSAECYYPE--RNEWRMITAM------------NTIRSGAGVCV 213 (308)
T ss_dssp --CSSCCBSCEEEEETT-EEEEECCBCSSCB----CCCEEEEETT--TTEEEECCCC------------SSCCBSCEEEE
T ss_pred --CCccccceEEEEECC-EEEEEeCCCCCCc----CceEEEEeCC--CCeEeeCCCC------------CCccccceEEE
Confidence 899999999999977 9999999876543 6899999999 8999999765 88999998888
Q ss_pred ecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeee
Q 042793 462 LPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELS 541 (545)
Q Consensus 462 ~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~ 541 (545)
+ +++|||+||.+.. ...+++++||++ +++|+.+ +.+|.+|.+|+++++ +++|||+||.+... .++++++||
T Consensus 214 ~-~~~iyv~GG~~~~-~~~~~v~~yd~~--~~~W~~~---~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~-~~~~v~~yd 284 (308)
T 1zgk_A 214 L-HNCIYAAGGYDGQ-DQLNSVERYDVE--TETWTFV---APMKHRRSALGITVH-QGRIYVLGGYDGHT-FLDSVECYD 284 (308)
T ss_dssp E-TTEEEEECCBCSS-SBCCCEEEEETT--TTEEEEC---CCCSSCCBSCEEEEE-TTEEEEECCBCSSC-BCCEEEEEE
T ss_pred E-CCEEEEEeCCCCC-CccceEEEEeCC--CCcEEEC---CCCCCCccceEEEEE-CCEEEEEcCcCCCc-ccceEEEEc
Confidence 7 9999999998743 347899999996 7899999 468889999999888 78999999988654 579999999
Q ss_pred ecc
Q 042793 542 LVS 544 (545)
Q Consensus 542 l~~ 544 (545)
+.+
T Consensus 285 ~~~ 287 (308)
T 1zgk_A 285 PDT 287 (308)
T ss_dssp TTT
T ss_pred CCC
Confidence 875
No 2
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=1.2e-40 Score=331.74 Aligned_cols=283 Identities=18% Similarity=0.227 Sum_probs=222.3
Q ss_pred CCCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCC-CCccceeEEEEcCCEEEEEcCC-C
Q 042793 226 TVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPP-PGRWGHTLSCVNGSHLVVFGGC-G 303 (545)
Q Consensus 226 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~-~~r~~~~~~~~~~~~iyv~GG~-~ 303 (545)
++|.+|.+|++++++++|||+||... +++++||+.+...+|+.++ ++| .+|.+|++++++ ++|||+||. .
T Consensus 5 ~lP~~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~d~~~~~~~W~~~~--~~p~~~R~~~~~~~~~-~~lyv~GG~~~ 76 (357)
T 2uvk_A 5 ETPVPFKSGTGAIDNDTVYIGLGSAG-----TAWYKLDTQAKDKKWTALA--AFPGGPRDQATSAFID-GNLYVFGGIGK 76 (357)
T ss_dssp CCSSCCCSCEEEEETTEEEEECGGGT-----TCEEEEETTSSSCCEEECC--CCTTCCCBSCEEEEET-TEEEEECCEEE
T ss_pred CCCccccceEEEEECCEEEEEeCcCC-----CeEEEEccccCCCCeeECC--CCCCCcCccceEEEEC-CEEEEEcCCCC
Confidence 47889999999999999999999753 4899999985223999876 788 799999998885 599999998 2
Q ss_pred ----CCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCC---------------------
Q 042793 304 ----RQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSG--------------------- 358 (545)
Q Consensus 304 ----~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~--------------------- 358 (545)
....++++++||+.++ +|+.+++++ |.+|..|+++++ +++|||+||.+...
T Consensus 77 ~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~-p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (357)
T 2uvk_A 77 NSEGLTQVFNDVHKYNPKTN--SWVKLMSHA-PMGMAGHVTFVH-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKI 152 (357)
T ss_dssp CTTSCEEECCCEEEEETTTT--EEEECSCCC-SSCCSSEEEEEE-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCccceeeccEEEEeCCCC--cEEECCCCC-CcccccceEEEE-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhh
Confidence 1236899999999999 999999884 699999999887 55999999975321
Q ss_pred ------------CccCcEEEEecCCCCCceEEecCCCCCCCCC-CcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeC
Q 042793 359 ------------VLLSDTFLLDLSMEKPVWREIPVTWTPPSRL-GHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDL 425 (545)
Q Consensus 359 ------------~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~-~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~ 425 (545)
..++++++||+. +++|+.+.. +|.++. +|+++++++ +||++||....+. .+++++.||+
T Consensus 153 ~~~~~~~~~~~~~~~~~v~~yd~~--~~~W~~~~~--~p~~~~~~~~~~~~~~-~iyv~GG~~~~~~---~~~~v~~~d~ 224 (357)
T 2uvk_A 153 NAHYFDKKAEDYFFNKFLLSFDPS--TQQWSYAGE--SPWYGTAGAAVVNKGD-KTWLINGEAKPGL---RTDAVFELDF 224 (357)
T ss_dssp HHHHHSSCGGGGCCCCEEEEEETT--TTEEEEEEE--CSSCCCBSCEEEEETT-EEEEECCEEETTE---ECCCEEEEEC
T ss_pred hhhhccccccccCCcccEEEEeCC--CCcEEECCC--CCCCCcccccEEEECC-EEEEEeeecCCCc---ccCceEEEEe
Confidence 246899999954 679999975 776654 488888887 9999999865442 3689999987
Q ss_pred CCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCC----------------CCCCCceEEEcCC
Q 042793 426 SEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAG----------------LHSATQLYLLDPT 489 (545)
Q Consensus 426 ~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~----------------~~~~~~v~~~d~~ 489 (545)
+..+++|+.+..+. .|..|..|+++++ +++|||+||.+.. ....+++++||++
T Consensus 225 d~~~~~W~~~~~~~----------~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~ 293 (357)
T 2uvk_A 225 TGNNLKWNKLAPVS----------SPDGVAGGFAGIS-NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH 293 (357)
T ss_dssp C---CEEEECCCSS----------TTTCCBSCEEEEE-TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC
T ss_pred cCCCCcEEecCCCC----------CCcccccceEEEE-CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecC
Confidence 33388999997651 2334557767766 9999999996532 1224689999996
Q ss_pred CCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeeccC
Q 042793 490 EEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLVSK 545 (545)
Q Consensus 490 ~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~~~ 545 (545)
+++|+.+ +.+|.+|.+|+++++ +++||||||.+..+..++++++|+++.+
T Consensus 294 --~~~W~~~---~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 294 --NGKWDKS---GELSQGRAYGVSLPW-NNSLLIIGGETAGGKAVTDSVLITVKDN 343 (357)
T ss_dssp -----CEEE---EECSSCCBSSEEEEE-TTEEEEEEEECGGGCEEEEEEEEEC-CC
T ss_pred --CCceeeC---CCCCCCcccceeEEe-CCEEEEEeeeCCCCCEeeeEEEEEEcCc
Confidence 7899999 468889999999887 7899999999987767899999998764
No 3
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=5.1e-40 Score=319.30 Aligned_cols=268 Identities=17% Similarity=0.242 Sum_probs=229.8
Q ss_pred hhhhcccCCcEEeccCCCCCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeE
Q 042793 209 ELTTLEAATWRKLTVGGTVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTL 288 (545)
Q Consensus 209 ~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~ 288 (545)
..||+.+++|..++ .+|.+|..|++++++++|||+||... ...++++++||+.++ +|+.++ ++|.+|..|++
T Consensus 33 ~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~~~--~W~~~~--~~p~~r~~~~~ 104 (302)
T 2xn4_A 33 ECYDFKEERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNG-SLRVRTVDSYDPVKD--QWTSVA--NMRDRRSTLGA 104 (302)
T ss_dssp EEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEESCBCS-SSBCCCEEEEETTTT--EEEEEC--CCSSCCBSCEE
T ss_pred EEEcCcCCcEeEcc---cCCcccccceEEEECCEEEEEeCcCC-CccccceEEECCCCC--ceeeCC--CCCccccceEE
Confidence 36899999999986 47889999999999999999999754 356789999999998 999886 89999999999
Q ss_pred EEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCC-CccCcEEEE
Q 042793 289 SCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSG-VLLSDTFLL 367 (545)
Q Consensus 289 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~ 367 (545)
++++ ++|||+||......++++++||+.++ +|+.++++ |.+|..|+++.++ ++||++||.+... ..++++++|
T Consensus 105 ~~~~-~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~--p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~y 178 (302)
T 2xn4_A 105 AVLN-GLLYAVGGFDGSTGLSSVEAYNIKSN--EWFHVAPM--NTRRSSVGVGVVG-GLLYAVGGYDVASRQCLSTVECY 178 (302)
T ss_dssp EEET-TEEEEEEEECSSCEEEEEEEEETTTT--EEEEECCC--SSCCBSCEEEEET-TEEEEECCEETTTTEECCCEEEE
T ss_pred EEEC-CEEEEEcCCCCCccCceEEEEeCCCC--eEeecCCC--CCcccCceEEEEC-CEEEEEeCCCCCCCccccEEEEE
Confidence 9885 59999999987778899999999999 99999988 8899999998884 5999999986543 357899999
Q ss_pred ecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCC
Q 042793 368 DLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPG 447 (545)
Q Consensus 368 d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~ 447 (545)
|+. +++|+.+.. +|.+|.+|+++++++ +||++||..... ..++++.||++ +++|+.+..+
T Consensus 179 d~~--~~~W~~~~~--~p~~r~~~~~~~~~~-~iyv~GG~~~~~----~~~~~~~yd~~--~~~W~~~~~~--------- 238 (302)
T 2xn4_A 179 NAT--TNEWTYIAE--MSTRRSGAGVGVLNN-LLYAVGGHDGPL----VRKSVEVYDPT--TNAWRQVADM--------- 238 (302)
T ss_dssp ETT--TTEEEEECC--CSSCCBSCEEEEETT-EEEEECCBSSSS----BCCCEEEEETT--TTEEEEECCC---------
T ss_pred eCC--CCcEEECCC--CccccccccEEEECC-EEEEECCCCCCc----ccceEEEEeCC--CCCEeeCCCC---------
Confidence 955 669999975 899999999999987 999999987543 26899999999 8999999765
Q ss_pred CCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCee
Q 042793 448 GIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTR 520 (545)
Q Consensus 448 g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~ 520 (545)
|.+|..|+++.+ +++|||+||.+.. ...+++++||++ +++|+.+. ..+|.+|.+|+++++ +++
T Consensus 239 ---~~~r~~~~~~~~-~~~i~v~GG~~~~-~~~~~v~~yd~~--~~~W~~~~--~~~~~~r~~~~~~~~-~~~ 301 (302)
T 2xn4_A 239 ---NMCRRNAGVCAV-NGLLYVVGGDDGS-CNLASVEYYNPT--TDKWTVVS--SCMSTGRSYAGVTVI-DKR 301 (302)
T ss_dssp ---SSCCBSCEEEEE-TTEEEEECCBCSS-SBCCCEEEEETT--TTEEEECS--SCCSSCCBSCEEEEE-EC-
T ss_pred ---CCccccCeEEEE-CCEEEEECCcCCC-cccccEEEEcCC--CCeEEECC--cccCcccccceEEEe-ccc
Confidence 788988887777 9999999998643 346899999996 78999984 268889999999988 444
No 4
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=8.8e-40 Score=317.62 Aligned_cols=267 Identities=18% Similarity=0.271 Sum_probs=225.1
Q ss_pred eeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEE
Q 042793 235 SACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVL 314 (545)
Q Consensus 235 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y 314 (545)
..+.+++.||++||.+. ..++++++||+.++ +|+.+. .+|.+|..|+++.+ +++|||+||.......+++++|
T Consensus 10 ~~~~~~~~i~v~GG~~~--~~~~~~~~~d~~~~--~W~~~~--~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~ 82 (302)
T 2xn4_A 10 TPMNLPKLMVVVGGQAP--KAIRSVECYDFKEE--RWHQVA--ELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSY 82 (302)
T ss_dssp -----CEEEEEECCBSS--SBCCCEEEEETTTT--EEEEEC--CCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEE
T ss_pred cccCCCCEEEEECCCCC--CCCCcEEEEcCcCC--cEeEcc--cCCcccccceEEEE-CCEEEEEeCcCCCccccceEEE
Confidence 44567889999999753 46789999999998 999886 88999999999877 5599999999877788999999
Q ss_pred ecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEE
Q 042793 315 DLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLS 394 (545)
Q Consensus 315 d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~ 394 (545)
|+.++ +|+.++++ |.+|..|+++.++ ++|||+||... ...++++++||+. +++|+.++. +|.+|..|+++
T Consensus 83 d~~~~--~W~~~~~~--p~~r~~~~~~~~~-~~iyv~GG~~~-~~~~~~~~~~d~~--~~~W~~~~~--~p~~r~~~~~~ 152 (302)
T 2xn4_A 83 DPVKD--QWTSVANM--RDRRSTLGAAVLN-GLLYAVGGFDG-STGLSSVEAYNIK--SNEWFHVAP--MNTRRSSVGVG 152 (302)
T ss_dssp ETTTT--EEEEECCC--SSCCBSCEEEEET-TEEEEEEEECS-SCEEEEEEEEETT--TTEEEEECC--CSSCCBSCEEE
T ss_pred CCCCC--ceeeCCCC--CccccceEEEEEC-CEEEEEcCCCC-CccCceEEEEeCC--CCeEeecCC--CCCcccCceEE
Confidence 99999 99999988 8899999999884 59999999854 4567899999955 669999976 89999999999
Q ss_pred EECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcC
Q 042793 395 VYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSV 474 (545)
Q Consensus 395 ~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~ 474 (545)
++++ +||++||...... ...++++.||+. +++|+.+..+ |.+|..|+++++ +++|||+||.+
T Consensus 153 ~~~~-~iyv~GG~~~~~~--~~~~~~~~yd~~--~~~W~~~~~~------------p~~r~~~~~~~~-~~~iyv~GG~~ 214 (302)
T 2xn4_A 153 VVGG-LLYAVGGYDVASR--QCLSTVECYNAT--TNEWTYIAEM------------STRRSGAGVGVL-NNLLYAVGGHD 214 (302)
T ss_dssp EETT-EEEEECCEETTTT--EECCCEEEEETT--TTEEEEECCC------------SSCCBSCEEEEE-TTEEEEECCBS
T ss_pred EECC-EEEEEeCCCCCCC--ccccEEEEEeCC--CCcEEECCCC------------ccccccccEEEE-CCEEEEECCCC
Confidence 9987 9999999866532 136899999999 8999999765 889999988877 99999999986
Q ss_pred CCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeecc
Q 042793 475 AGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 475 ~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
.. ...+++++||++ +++|+.+ +.+|.+|.+|+++++ +++|||+||.+... .++++++||+.+
T Consensus 215 ~~-~~~~~~~~yd~~--~~~W~~~---~~~~~~r~~~~~~~~-~~~i~v~GG~~~~~-~~~~v~~yd~~~ 276 (302)
T 2xn4_A 215 GP-LVRKSVEVYDPT--TNAWRQV---ADMNMCRRNAGVCAV-NGLLYVVGGDDGSC-NLASVEYYNPTT 276 (302)
T ss_dssp SS-SBCCCEEEEETT--TTEEEEE---CCCSSCCBSCEEEEE-TTEEEEECCBCSSS-BCCCEEEEETTT
T ss_pred CC-cccceEEEEeCC--CCCEeeC---CCCCCccccCeEEEE-CCEEEEECCcCCCc-ccccEEEEcCCC
Confidence 43 346899999996 7899999 467888999998888 78999999987654 479999999875
No 5
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=3.2e-40 Score=321.50 Aligned_cols=264 Identities=19% Similarity=0.249 Sum_probs=228.8
Q ss_pred hhhhcccCCcEEeccCCCCCCCCCceeeEEECCEEEEEcCCC---CCCCccCceEEEeCCCCCCceEEeccCCCCCCccc
Q 042793 209 ELTTLEAATWRKLTVGGTVEPSRCNFSACAVGNRVVLFGGEG---VNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWG 285 (545)
Q Consensus 209 ~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~---~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~ 285 (545)
..||+.+++|..++ .+|.+|.+|++++++++|||+||.. .....++++++||+.++ +|+.++ ++|.+|..
T Consensus 42 ~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~--~W~~~~--~~p~~r~~ 114 (308)
T 1zgk_A 42 EAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN--QWSPCA--PMSVPRNR 114 (308)
T ss_dssp EEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTT--EEEECC--CCSSCCBT
T ss_pred EEEcCCCCeEeECC---CCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCC--eEeECC--CCCcCccc
Confidence 37899999999995 4788999999999999999999973 33456789999999998 999876 88999999
Q ss_pred eeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEE
Q 042793 286 HTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTF 365 (545)
Q Consensus 286 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 365 (545)
|++++++ ++|||+||......++++++||+.++ +|+.++++ |.+|..|+++.+ +++||++||.+.. ..+++++
T Consensus 115 ~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~-~~~~~~~ 187 (308)
T 1zgk_A 115 IGVGVID-GHIYAVGGSHGCIHHNSVERYEPERD--EWHLVAPM--LTRRIGVGVAVL-NRLLYAVGGFDGT-NRLNSAE 187 (308)
T ss_dssp CEEEEET-TEEEEECCEETTEECCCEEEEETTTT--EEEECCCC--SSCCBSCEEEEE-TTEEEEECCBCSS-CBCCCEE
T ss_pred cEEEEEC-CEEEEEcCCCCCcccccEEEECCCCC--eEeECCCC--CccccceEEEEE-CCEEEEEeCCCCC-CcCceEE
Confidence 9999884 59999999887778899999999999 99999987 889999999888 5599999998644 3488999
Q ss_pred EEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCC
Q 042793 366 LLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGN 445 (545)
Q Consensus 366 ~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~ 445 (545)
+||+. +++|+.+.. +|.+|..|+++++++ +||++||...... .+++++||+. +++|+++..+
T Consensus 188 ~yd~~--~~~W~~~~~--~p~~r~~~~~~~~~~-~iyv~GG~~~~~~----~~~v~~yd~~--~~~W~~~~~~------- 249 (308)
T 1zgk_A 188 CYYPE--RNEWRMITA--MNTIRSGAGVCVLHN-CIYAAGGYDGQDQ----LNSVERYDVE--TETWTFVAPM------- 249 (308)
T ss_dssp EEETT--TTEEEECCC--CSSCCBSCEEEEETT-EEEEECCBCSSSB----CCCEEEEETT--TTEEEECCCC-------
T ss_pred EEeCC--CCeEeeCCC--CCCccccceEEEECC-EEEEEeCCCCCCc----cceEEEEeCC--CCcEEECCCC-------
Confidence 99954 669999975 899999999999977 9999999876542 6899999999 8999999755
Q ss_pred CCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEe
Q 042793 446 PGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVV 516 (545)
Q Consensus 446 ~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~ 516 (545)
|.+|..|+++++ +++|||+||.+. ....+++++||++ +++|+.+ +.+|.+|.+|+++++
T Consensus 250 -----p~~r~~~~~~~~-~~~i~v~GG~~~-~~~~~~v~~yd~~--~~~W~~~---~~~p~~r~~~~~~~l 308 (308)
T 1zgk_A 250 -----KHRRSALGITVH-QGRIYVLGGYDG-HTFLDSVECYDPD--TDTWSEV---TRMTSGRSGVGVAVT 308 (308)
T ss_dssp -----SSCCBSCEEEEE-TTEEEEECCBCS-SCBCCEEEEEETT--TTEEEEE---EECSSCCBSCEEEEC
T ss_pred -----CCCccceEEEEE-CCEEEEEcCcCC-CcccceEEEEcCC--CCEEeec---CCCCCCcccceeEeC
Confidence 889999988887 999999999864 3456899999996 7899999 568999999998864
No 6
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=8.2e-40 Score=318.44 Aligned_cols=262 Identities=17% Similarity=0.227 Sum_probs=226.0
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
.+.||+|||... ++++++||+.++ +|+.++ ++|.+|.+|++++++ ++|||+||.. ....+++++||+.++
T Consensus 11 ~~~l~~~GG~~~----~~~~~~~d~~~~--~W~~~~--~~p~~r~~~~~~~~~-~~lyv~GG~~-~~~~~~~~~~d~~~~ 80 (306)
T 3ii7_A 11 HDYRIALFGGSQ----PQSCRYFNPKDY--SWTDIR--CPFEKRRDAACVFWD-NVVYILGGSQ-LFPIKRMDCYNVVKD 80 (306)
T ss_dssp CCEEEEEECCSS----TTSEEEEETTTT--EEEECC--CCSCCCBSCEEEEET-TEEEEECCBS-SSBCCEEEEEETTTT
T ss_pred cceEEEEeCCCC----CceEEEecCCCC--CEecCC--CCCcccceeEEEEEC-CEEEEEeCCC-CCCcceEEEEeCCCC
Confidence 478999999754 689999999998 999876 889999999998874 5899999988 567899999999999
Q ss_pred CCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCc
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGR 399 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 399 (545)
+|+.++++ |.+|..|+++.+ +++|||+||.+.....++++++||+. +++|+.++. +|.+|..|+++.+++
T Consensus 81 --~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~--~~~W~~~~~--~p~~r~~~~~~~~~~- 150 (306)
T 3ii7_A 81 --SWYSKLGP--PTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTR--TESWHTKPS--MLTQRCSHGMVEANG- 150 (306)
T ss_dssp --EEEEEECC--SSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETT--TTEEEEECC--CSSCCBSCEEEEETT-
T ss_pred --eEEECCCC--CccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCC--CCceEeCCC--CcCCcceeEEEEECC-
Confidence 99999987 889999999988 55999999987566678999999954 669999976 899999999999987
Q ss_pred EEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCC
Q 042793 400 KILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHS 479 (545)
Q Consensus 400 ~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~ 479 (545)
+||++||...........+++++||+. +++|+.+..+ |.+|..|+++++ +++|||+||.+.. ..
T Consensus 151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~------------p~~r~~~~~~~~-~~~i~v~GG~~~~-~~ 214 (306)
T 3ii7_A 151 LIYVCGGSLGNNVSGRVLNSCEVYDPA--TETWTELCPM------------IEARKNHGLVFV-KDKIFAVGGQNGL-GG 214 (306)
T ss_dssp EEEEECCEESCTTTCEECCCEEEEETT--TTEEEEECCC------------SSCCBSCEEEEE-TTEEEEECCEETT-EE
T ss_pred EEEEECCCCCCCCcccccceEEEeCCC--CCeEEECCCc------------cchhhcceEEEE-CCEEEEEeCCCCC-CC
Confidence 999999987654321236899999999 8899999765 889999988888 9999999998644 34
Q ss_pred CCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeecc
Q 042793 480 ATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 480 ~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
.+++++||++ +++|+.+ +.+|.+|.+|+++++ +++|||+||.+... .++++++||+++
T Consensus 215 ~~~~~~yd~~--~~~W~~~---~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~-~~~~~~~yd~~~ 272 (306)
T 3ii7_A 215 LDNVEYYDIK--LNEWKMV---SPMPWKGVTVKCAAV-GSIVYVLAGFQGVG-RLGHILEYNTET 272 (306)
T ss_dssp BCCEEEEETT--TTEEEEC---CCCSCCBSCCEEEEE-TTEEEEEECBCSSS-BCCEEEEEETTT
T ss_pred CceEEEeeCC--CCcEEEC---CCCCCCccceeEEEE-CCEEEEEeCcCCCe-eeeeEEEEcCCC
Confidence 6899999996 7899999 568889999999988 78999999998665 578999999875
No 7
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=6e-40 Score=319.42 Aligned_cols=264 Identities=17% Similarity=0.251 Sum_probs=228.9
Q ss_pred hhhhcccCCcEEeccCCCCCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeE
Q 042793 209 ELTTLEAATWRKLTVGGTVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTL 288 (545)
Q Consensus 209 ~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~ 288 (545)
..||+.+++|..++. +|.+|.+|++++++++|||+||.. ...++++++||+.++ +|+.++ ++|.+|..|++
T Consensus 27 ~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~~--~W~~~~--~~p~~r~~~~~ 97 (306)
T 3ii7_A 27 RYFNPKDYSWTDIRC---PFEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNVVKD--SWYSKL--GPPTPRDSLAA 97 (306)
T ss_dssp EEEETTTTEEEECCC---CSCCCBSCEEEEETTEEEEECCBS--SSBCCEEEEEETTTT--EEEEEE--CCSSCCBSCEE
T ss_pred EEecCCCCCEecCCC---CCcccceeEEEEECCEEEEEeCCC--CCCcceEEEEeCCCC--eEEECC--CCCccccceeE
Confidence 378999999999864 788999999999999999999986 567899999999998 999886 78999999999
Q ss_pred EEEcCCEEEEEcCCC-CCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCC---ccCcE
Q 042793 289 SCVNGSHLVVFGGCG-RQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGV---LLSDT 364 (545)
Q Consensus 289 ~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~---~~~~~ 364 (545)
+++ +++|||+||.+ .....+++++||+.++ +|+.++++ |.+|..|+++.++ ++||++||...... .++++
T Consensus 98 ~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~--~W~~~~~~--p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~ 171 (306)
T 3ii7_A 98 CAA-EGKIYTSGGSEVGNSALYLFECYDTRTE--SWHTKPSM--LTQRCSHGMVEAN-GLIYVCGGSLGNNVSGRVLNSC 171 (306)
T ss_dssp EEE-TTEEEEECCBBTTBSCCCCEEEEETTTT--EEEEECCC--SSCCBSCEEEEET-TEEEEECCEESCTTTCEECCCE
T ss_pred EEE-CCEEEEECCCCCCCcEeeeEEEEeCCCC--ceEeCCCC--cCCcceeEEEEEC-CEEEEECCCCCCCCcccccceE
Confidence 888 55999999987 4457899999999999 99999988 8899999998884 59999999865433 28899
Q ss_pred EEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCC
Q 042793 365 FLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAG 444 (545)
Q Consensus 365 ~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~ 444 (545)
++||+. +++|+.++. +|.+|..|+++.+++ +||++||..... ..++++.||+. +++|+.+..+
T Consensus 172 ~~yd~~--~~~W~~~~~--~p~~r~~~~~~~~~~-~i~v~GG~~~~~----~~~~~~~yd~~--~~~W~~~~~~------ 234 (306)
T 3ii7_A 172 EVYDPA--TETWTELCP--MIEARKNHGLVFVKD-KIFAVGGQNGLG----GLDNVEYYDIK--LNEWKMVSPM------ 234 (306)
T ss_dssp EEEETT--TTEEEEECC--CSSCCBSCEEEEETT-EEEEECCEETTE----EBCCEEEEETT--TTEEEECCCC------
T ss_pred EEeCCC--CCeEEECCC--ccchhhcceEEEECC-EEEEEeCCCCCC----CCceEEEeeCC--CCcEEECCCC------
Confidence 999955 669999975 899999999999987 999999987653 36899999999 8899999765
Q ss_pred CCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeC
Q 042793 445 NPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVG 517 (545)
Q Consensus 445 ~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~ 517 (545)
|.+|..|+++++ +++|||+||.+... ..+++++||++ +++|+.+ +.+|.+|.+|+++++.
T Consensus 235 ------p~~r~~~~~~~~-~~~i~v~GG~~~~~-~~~~~~~yd~~--~~~W~~~---~~~~~~r~~~~~~~~~ 294 (306)
T 3ii7_A 235 ------PWKGVTVKCAAV-GSIVYVLAGFQGVG-RLGHILEYNTE--TDKWVAN---SKVRAFPVTSCLICVV 294 (306)
T ss_dssp ------SCCBSCCEEEEE-TTEEEEEECBCSSS-BCCEEEEEETT--TTEEEEE---EEEECCSCTTCEEEEE
T ss_pred ------CCCccceeEEEE-CCEEEEEeCcCCCe-eeeeEEEEcCC--CCeEEeC---CCcccccceeEEEEEC
Confidence 889999988887 99999999987433 56899999996 7899999 4578889999998874
No 8
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=6.4e-41 Score=327.60 Aligned_cols=276 Identities=19% Similarity=0.222 Sum_probs=232.1
Q ss_pred hhhhcccCCcEEeccCCCCCCCCCceeeEEECCEEEEEcCCC-----CCCCccCceEEEeCCCCCCceEEeccCCCCCCc
Q 042793 209 ELTTLEAATWRKLTVGGTVEPSRCNFSACAVGNRVVLFGGEG-----VNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGR 283 (545)
Q Consensus 209 ~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-----~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r 283 (545)
..||+.+++|...+. +.|.+|.+|++++++++|||+||.. ......+++++||+.++ +|+.++ ++|.+|
T Consensus 16 ~~yd~~~~~W~~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~--~W~~~~--~~p~~r 89 (315)
T 4asc_A 16 VAYDPAANECYCASL--SSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS--EWLGMP--PLPSPR 89 (315)
T ss_dssp EEEETTTTEEEEEEC--CCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT--EEEECC--CBSSCE
T ss_pred EEECCCCCeEecCCC--CCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCC--eEEECC--CCCcch
Confidence 378999999987332 3366899999999999999999952 22334567999999998 999876 899999
Q ss_pred cceeEEEEcCCEEEEEcCCC---CCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCc
Q 042793 284 WGHTLSCVNGSHLVVFGGCG---RQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVL 360 (545)
Q Consensus 284 ~~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~ 360 (545)
..|+++++ +++|||+||.+ .....+++++||+.++ +|+.++++ |.+|..|+++.++ ++|||+||.......
T Consensus 90 ~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~--p~~r~~~~~~~~~-~~iyv~GG~~~~~~~ 163 (315)
T 4asc_A 90 CLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSF--KWGESDPL--PYVVYGHTVLSHM-DLVYVIGGKGSDRKC 163 (315)
T ss_dssp ESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTT--EEEECCCC--SSCCBSCEEEEET-TEEEEECCBCTTSCB
T ss_pred hceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCC--cEeECCCC--CCcccceeEEEEC-CEEEEEeCCCCCCcc
Confidence 99999888 45999999975 2457899999999999 99999987 8899999999884 599999998666778
Q ss_pred cCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCC
Q 042793 361 LSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGM 440 (545)
Q Consensus 361 ~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~ 440 (545)
++++++||+. +++|+.++. +|.+|..|+++++++ +||++||..... ..+++++||++ +++|+.+..+
T Consensus 164 ~~~~~~yd~~--~~~W~~~~~--~p~~r~~~~~~~~~~-~iyv~GG~~~~~----~~~~~~~yd~~--~~~W~~~~~~-- 230 (315)
T 4asc_A 164 LNKMCVYDPK--KFEWKELAP--MQTARSLFGATVHDG-RIIVAAGVTDTG----LTSSAEVYSIT--DNKWAPFEAF-- 230 (315)
T ss_dssp CCCEEEEETT--TTEEEECCC--CSSCCBSCEEEEETT-EEEEEEEECSSS----EEEEEEEEETT--TTEEEEECCC--
T ss_pred cceEEEEeCC--CCeEEECCC--CCCchhceEEEEECC-EEEEEeccCCCC----ccceEEEEECC--CCeEEECCCC--
Confidence 8999999954 669999976 899999999999987 999999987654 26899999999 8899999765
Q ss_pred CCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCC----C----CCCCceEEEcCCCCCCceEEeccCCCCCCCCCCce
Q 042793 441 PGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAG----L----HSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHS 512 (545)
Q Consensus 441 ~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~----~----~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~ 512 (545)
|.+|..|+++++ +++|||+||.+.. . ...+++++||++ +++|+.+ +|.+|..|+
T Consensus 231 ----------p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~--~~~W~~~-----~~~~r~~~~ 292 (315)
T 4asc_A 231 ----------PQERSSLSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEE--EKKWEGV-----LREIAYAAG 292 (315)
T ss_dssp ----------SSCCBSCEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETT--TTEEEEE-----ESCSSCCSS
T ss_pred ----------CCcccceeEEEE-CCEEEEECCccccCcCCccccccccCcEEEecCC--CChhhhh-----ccCCcCccc
Confidence 889999988887 8999999997531 1 245789999996 7899999 566788899
Q ss_pred eEEeCCeeEEEEcCCC
Q 042793 513 TCVVGGTRTIVLGGQT 528 (545)
Q Consensus 513 ~~~~~~~~l~i~GG~~ 528 (545)
++++ +++||++....
T Consensus 293 ~~~~-~~~l~v~~~~~ 307 (315)
T 4asc_A 293 ATFL-PVRLNVLRLTK 307 (315)
T ss_dssp CEEE-EEEECGGGSEE
T ss_pred eEEe-CCEEEEEEehh
Confidence 8888 89999987643
No 9
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=314.86 Aligned_cols=264 Identities=20% Similarity=0.276 Sum_probs=226.8
Q ss_pred EECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecC
Q 042793 238 AVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLD 317 (545)
Q Consensus 238 ~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 317 (545)
.++++||+|||.......++++++||+.++ +|+.++ .+|.+|.+|+++.++ ++|||+||.......+++++||+.
T Consensus 12 ~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~--~W~~~~--~~p~~r~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~d~~ 86 (301)
T 2vpj_A 12 GANEVLLVVGGFGSQQSPIDVVEKYDPKTQ--EWSFLP--SITRKRRYVASVSLH-DRIYVIGGYDGRSRLSSVECLDYT 86 (301)
T ss_dssp -CCEEEEEECCEETTTEECCCEEEEETTTT--EEEECC--CCSSCCBSCEEEEET-TEEEEECCBCSSCBCCCEEEEETT
T ss_pred cCCCEEEEEeCccCCCcceeEEEEEcCCCC--eEEeCC--CCChhhccccEEEEC-CEEEEEcCCCCCccCceEEEEECC
Confidence 368899999994444567899999999998 999876 788899999998875 599999999877788999999999
Q ss_pred CCCCc---eEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEE
Q 042793 318 AKPPT---WREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLS 394 (545)
Q Consensus 318 t~~~~---W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~ 394 (545)
++ + |+.++++ |.+|..|+++.+ +++||++||... ...++++++||+. +++|+.++. +|.+|..|+++
T Consensus 87 ~~--~~~~W~~~~~~--p~~r~~~~~~~~-~~~lyv~GG~~~-~~~~~~~~~~d~~--~~~W~~~~~--~p~~r~~~~~~ 156 (301)
T 2vpj_A 87 AD--EDGVWYSVAPM--NVRRGLAGATTL-GDMIYVSGGFDG-SRRHTSMERYDPN--IDQWSMLGD--MQTAREGAGLV 156 (301)
T ss_dssp CC--TTCCCEEECCC--SSCCBSCEEEEE-TTEEEEECCBCS-SCBCCEEEEEETT--TTEEEEEEE--CSSCCBSCEEE
T ss_pred CC--CCCeeEECCCC--CCCccceeEEEE-CCEEEEEcccCC-CcccceEEEEcCC--CCeEEECCC--CCCCcccceEE
Confidence 99 8 9999987 889999999888 559999999864 4457899999954 669999976 88999999999
Q ss_pred EECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcC
Q 042793 395 VYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSV 474 (545)
Q Consensus 395 ~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~ 474 (545)
.+++ +||++||..... ..++++.||+. +++|+.+..+ |.+|..|+++.+ +++|||+||.+
T Consensus 157 ~~~~-~iyv~GG~~~~~----~~~~~~~~d~~--~~~W~~~~~~------------p~~r~~~~~~~~-~~~i~v~GG~~ 216 (301)
T 2vpj_A 157 VASG-VIYCLGGYDGLN----ILNSVEKYDPH--TGHWTNVTPM------------ATKRSGAGVALL-NDHIYVVGGFD 216 (301)
T ss_dssp EETT-EEEEECCBCSSC----BCCCEEEEETT--TTEEEEECCC------------SSCCBSCEEEEE-TTEEEEECCBC
T ss_pred EECC-EEEEECCCCCCc----ccceEEEEeCC--CCcEEeCCCC------------CcccccceEEEE-CCEEEEEeCCC
Confidence 9987 999999987654 36999999999 8899999755 889999988887 99999999987
Q ss_pred CCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeecc
Q 042793 475 AGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 475 ~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
... ..+++++||++ +++|+.+ +.+|.+|.+|+++++ +++|||+||.+... .++++++||+.+
T Consensus 217 ~~~-~~~~v~~yd~~--~~~W~~~---~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~-~~~~v~~yd~~~ 278 (301)
T 2vpj_A 217 GTA-HLSSVEAYNIR--TDSWTTV---TSMTTPRCYVGATVL-RGRLYAIAGYDGNS-LLSSIECYDPII 278 (301)
T ss_dssp SSS-BCCCEEEEETT--TTEEEEE---CCCSSCCBSCEEEEE-TTEEEEECCBCSSS-BEEEEEEEETTT
T ss_pred CCc-ccceEEEEeCC--CCcEEEC---CCCCCcccceeEEEE-CCEEEEEcCcCCCc-ccccEEEEcCCC
Confidence 433 36899999996 7899999 468889999999888 78999999987654 568999999875
No 10
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=1.7e-40 Score=325.09 Aligned_cols=273 Identities=22% Similarity=0.317 Sum_probs=230.1
Q ss_pred hhhhcccCCcEEeccCCCCCCCCCceeeEEECCEEEEEcCCCCC-----CCccCceEEEeCCCCCCceEEeccCCCCCCc
Q 042793 209 ELTTLEAATWRKLTVGGTVEPSRCNFSACAVGNRVVLFGGEGVN-----MQPMNDTFVLDLNSSNPEWQHVHVSSPPPGR 283 (545)
Q Consensus 209 ~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-----~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r 283 (545)
..||+.+++|...+. ..|.+|..|++++++++|||+||...+ ....+++++||+.++ +|+.++ ++|.+|
T Consensus 27 ~~yd~~~~~W~~~~~--~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~--~W~~~~--~~p~~r 100 (318)
T 2woz_A 27 VAYDPMENECYLTAL--AEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS--EWVGLP--PLPSAR 100 (318)
T ss_dssp EEEETTTTEEEEEEE--CTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT--EEEECS--CBSSCB
T ss_pred EEECCCCCceecccC--CccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC--cEEECC--CCCccc
Confidence 479999999988543 345789999999999999999995321 123456999999998 999876 899999
Q ss_pred cceeEEEEcCCEEEEEcCCC--CCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCcc
Q 042793 284 WGHTLSCVNGSHLVVFGGCG--RQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLL 361 (545)
Q Consensus 284 ~~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~ 361 (545)
..|++++++ ++|||+||.. .....+++++||+.++ +|+.++++ |.+|..|+++++ +++|||+||.......+
T Consensus 101 ~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~ 174 (318)
T 2woz_A 101 CLFGLGEVD-DKIYVVAGKDLQTEASLDSVLCYDPVAA--KWSEVKNL--PIKVYGHNVISH-NGMIYCLGGKTDDKKCT 174 (318)
T ss_dssp CSCEEEEET-TEEEEEEEEBTTTCCEEEEEEEEETTTT--EEEEECCC--SSCEESCEEEEE-TTEEEEECCEESSSCBC
T ss_pred cccceEEEC-CEEEEEcCccCCCCcccceEEEEeCCCC--CEeECCCC--CCcccccEEEEE-CCEEEEEcCCCCCCCcc
Confidence 999998884 5999999986 3447889999999999 99999987 889999999887 55999999987666778
Q ss_pred CcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCC
Q 042793 362 SDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMP 441 (545)
Q Consensus 362 ~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~ 441 (545)
+++++||+. +++|+.++. +|.+|..|+++++++ +||++||..... ..+++++||++ +++|+.+..+
T Consensus 175 ~~~~~yd~~--~~~W~~~~~--~p~~r~~~~~~~~~~-~iyv~GG~~~~~----~~~~~~~yd~~--~~~W~~~~~~--- 240 (318)
T 2woz_A 175 NRVFIYNPK--KGDWKDLAP--MKTPRSMFGVAIHKG-KIVIAGGVTEDG----LSASVEAFDLK--TNKWEVMTEF--- 240 (318)
T ss_dssp CCEEEEETT--TTEEEEECC--CSSCCBSCEEEEETT-EEEEEEEEETTE----EEEEEEEEETT--TCCEEECCCC---
T ss_pred ceEEEEcCC--CCEEEECCC--CCCCcccceEEEECC-EEEEEcCcCCCC----ccceEEEEECC--CCeEEECCCC---
Confidence 999999955 669999975 899999999999987 999999987654 26899999999 8899999765
Q ss_pred CCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCC--------CCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCcee
Q 042793 442 GAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAG--------LHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHST 513 (545)
Q Consensus 442 ~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~--------~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~ 513 (545)
|.+|..|+++++ +++|||+||.+.. ....+++|+||++ +++|+.+ +|.+|.+|++
T Consensus 241 ---------p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~--~~~W~~~-----~~~~r~~~~~ 303 (318)
T 2woz_A 241 ---------PQERSSISLVSL-AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDD--KKEWAGM-----LKEIRYASGA 303 (318)
T ss_dssp ---------SSCCBSCEEEEE-TTEEEEECCBCCBC----CCBCCBCCCEEEEETT--TTEEEEE-----ESCCGGGTTC
T ss_pred ---------CCcccceEEEEE-CCEEEEECCeeccCCCCceeccceeeeEEEEeCC--CCEehhh-----cccccccccc
Confidence 889999988877 8999999997642 1346899999996 7899999 6778899999
Q ss_pred EEeCCeeEEEEc
Q 042793 514 CVVGGTRTIVLG 525 (545)
Q Consensus 514 ~~~~~~~l~i~G 525 (545)
+++ +++|||+.
T Consensus 304 ~~~-~~~iyi~~ 314 (318)
T 2woz_A 304 SCL-ATRLNLFK 314 (318)
T ss_dssp EEE-EEEEEGGG
T ss_pred eee-CCEEEEEE
Confidence 888 89999975
No 11
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=4.5e-39 Score=312.49 Aligned_cols=263 Identities=18% Similarity=0.287 Sum_probs=228.3
Q ss_pred hhhhcccCCcEEeccCCCCCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCc---eEEeccCCCCCCccc
Q 042793 209 ELTTLEAATWRKLTVGGTVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPE---WQHVHVSSPPPGRWG 285 (545)
Q Consensus 209 ~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~---W~~~~~~~~~~~r~~ 285 (545)
..||+.+++|..++. +|.+|..|++++++++||++||.. ....++++++||+.++ + |+.++ ++|.+|..
T Consensus 34 ~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~l~v~GG~~-~~~~~~~~~~~d~~~~--~~~~W~~~~--~~p~~r~~ 105 (301)
T 2vpj_A 34 EKYDPKTQEWSFLPS---ITRKRRYVASVSLHDRIYVIGGYD-GRSRLSSVECLDYTAD--EDGVWYSVA--PMNVRRGL 105 (301)
T ss_dssp EEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCBC-SSCBCCCEEEEETTCC--TTCCCEEEC--CCSSCCBS
T ss_pred EEEcCCCCeEEeCCC---CChhhccccEEEECCEEEEEcCCC-CCccCceEEEEECCCC--CCCeeEECC--CCCCCccc
Confidence 368999999999874 677899999999999999999986 3457889999999998 8 99886 88999999
Q ss_pred eeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEE
Q 042793 286 HTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTF 365 (545)
Q Consensus 286 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 365 (545)
|+++.+ +++|||+||.......+++++||+.++ +|+.++++ |.+|..|+++.+ +++||++||.+. ...+++++
T Consensus 106 ~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~-~~~~~~~~ 178 (301)
T 2vpj_A 106 AGATTL-GDMIYVSGGFDGSRRHTSMERYDPNID--QWSMLGDM--QTAREGAGLVVA-SGVIYCLGGYDG-LNILNSVE 178 (301)
T ss_dssp CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTT--EEEEEEEC--SSCCBSCEEEEE-TTEEEEECCBCS-SCBCCCEE
T ss_pred eeEEEE-CCEEEEEcccCCCcccceEEEEcCCCC--eEEECCCC--CCCcccceEEEE-CCEEEEECCCCC-CcccceEE
Confidence 999888 459999999987777899999999999 99999987 889999999888 459999999854 34788999
Q ss_pred EEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCC
Q 042793 366 LLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGN 445 (545)
Q Consensus 366 ~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~ 445 (545)
+||+. +++|+.+.. +|.+|..|+++.+++ +||++||...... .++++.||++ +++|+++..+
T Consensus 179 ~~d~~--~~~W~~~~~--~p~~r~~~~~~~~~~-~i~v~GG~~~~~~----~~~v~~yd~~--~~~W~~~~~~------- 240 (301)
T 2vpj_A 179 KYDPH--TGHWTNVTP--MATKRSGAGVALLND-HIYVVGGFDGTAH----LSSVEAYNIR--TDSWTTVTSM------- 240 (301)
T ss_dssp EEETT--TTEEEEECC--CSSCCBSCEEEEETT-EEEEECCBCSSSB----CCCEEEEETT--TTEEEEECCC-------
T ss_pred EEeCC--CCcEEeCCC--CCcccccceEEEECC-EEEEEeCCCCCcc----cceEEEEeCC--CCcEEECCCC-------
Confidence 99955 669999975 899999999999987 9999999876542 6899999999 8899999755
Q ss_pred CCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEe
Q 042793 446 PGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVV 516 (545)
Q Consensus 446 ~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~ 516 (545)
|.+|..|+++++ +++|||+||.+.. ...+++++||++ +++|+.+ +.+|.+|.+|+++++
T Consensus 241 -----p~~r~~~~~~~~-~~~i~v~GG~~~~-~~~~~v~~yd~~--~~~W~~~---~~~~~~r~~~~~~~~ 299 (301)
T 2vpj_A 241 -----TTPRCYVGATVL-RGRLYAIAGYDGN-SLLSSIECYDPI--IDSWEVV---TSMGTQRCDAGVCVL 299 (301)
T ss_dssp -----SSCCBSCEEEEE-TTEEEEECCBCSS-SBEEEEEEEETT--TTEEEEE---EEEEEEEESCEEEEE
T ss_pred -----CCcccceeEEEE-CCEEEEEcCcCCC-cccccEEEEcCC--CCeEEEc---CCCCcccccceEEEe
Confidence 889999988877 9999999997643 345889999996 7899999 468889999999886
No 12
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=5.3e-38 Score=306.89 Aligned_cols=258 Identities=16% Similarity=0.164 Sum_probs=214.5
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCC-----C-CcccCcEEE
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCG-----R-QGLLNDVFV 313 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~-----~-~~~~~~~~~ 313 (545)
.+.||++|| +++++||+.++ +|+. ...+.|.+|.+|+++++ +++|||+||.. . ....+++++
T Consensus 4 ~~~l~~~GG--------~~~~~yd~~~~--~W~~-~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~ 71 (315)
T 4asc_A 4 QDLIFMISE--------EGAVAYDPAAN--ECYC-ASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQ 71 (315)
T ss_dssp EEEEEEEET--------TEEEEEETTTT--EEEE-EECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEE
T ss_pred ceEEEEEcC--------CceEEECCCCC--eEec-CCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEE
Confidence 457999999 38999999998 9986 32334668999998876 55899999962 1 124567999
Q ss_pred EecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCC--CCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCc
Q 042793 314 LDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCA--DSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGH 391 (545)
Q Consensus 314 yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~ 391 (545)
||+.++ +|+.++++ |.+|..|+++.+ +++|||+||.. .....++++++||+. +++|+.++. +|.+|.+|
T Consensus 72 ~d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~--~~~W~~~~~--~p~~r~~~ 142 (315)
T 4asc_A 72 FDHLDS--EWLGMPPL--PSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRL--SFKWGESDP--LPYVVYGH 142 (315)
T ss_dssp EETTTT--EEEECCCB--SSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETT--TTEEEECCC--CSSCCBSC
T ss_pred ecCCCC--eEEECCCC--CcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCC--CCcEeECCC--CCCcccce
Confidence 999999 99999988 889999999988 55999999975 345678999999954 669999976 89999999
Q ss_pred EEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEc
Q 042793 392 TLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFG 471 (545)
Q Consensus 392 ~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~G 471 (545)
+++.+++ +||++||...... ..+++++||+. +++|++++.+ |.+|..|+++++ +++|||+|
T Consensus 143 ~~~~~~~-~iyv~GG~~~~~~---~~~~~~~yd~~--~~~W~~~~~~------------p~~r~~~~~~~~-~~~iyv~G 203 (315)
T 4asc_A 143 TVLSHMD-LVYVIGGKGSDRK---CLNKMCVYDPK--KFEWKELAPM------------QTARSLFGATVH-DGRIIVAA 203 (315)
T ss_dssp EEEEETT-EEEEECCBCTTSC---BCCCEEEEETT--TTEEEECCCC------------SSCCBSCEEEEE-TTEEEEEE
T ss_pred eEEEECC-EEEEEeCCCCCCc---ccceEEEEeCC--CCeEEECCCC------------CCchhceEEEEE-CCEEEEEe
Confidence 9999988 9999999854433 37999999999 8899999765 889999988887 99999999
Q ss_pred CcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCc----c----cccccceeeeec
Q 042793 472 GSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGE----E----WMLSELHELSLV 543 (545)
Q Consensus 472 G~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~----~----~~~~~~~~l~l~ 543 (545)
|.+... ..+++++||++ +++|+.+ +.+|.+|.+|+++++ +++|||+||.+.. + ..++++|+||++
T Consensus 204 G~~~~~-~~~~~~~yd~~--~~~W~~~---~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~ 276 (315)
T 4asc_A 204 GVTDTG-LTSSAEVYSIT--DNKWAPF---EAFPQERSSLSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEE 276 (315)
T ss_dssp EECSSS-EEEEEEEEETT--TTEEEEE---CCCSSCCBSCEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETT
T ss_pred ccCCCC-ccceEEEEECC--CCeEEEC---CCCCCcccceeEEEE-CCEEEEECCccccCcCCccccccccCcEEEecCC
Confidence 986443 46899999996 7799999 468899999999988 7899999998642 1 357899999987
Q ss_pred c
Q 042793 544 S 544 (545)
Q Consensus 544 ~ 544 (545)
+
T Consensus 277 ~ 277 (315)
T 4asc_A 277 E 277 (315)
T ss_dssp T
T ss_pred C
Confidence 5
No 13
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=1.9e-37 Score=332.63 Aligned_cols=288 Identities=17% Similarity=0.257 Sum_probs=228.2
Q ss_pred CCCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEec-c---CCCCCCccceeEEEEc-CCEEEEEc
Q 042793 226 TVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVH-V---SSPPPGRWGHTLSCVN-GSHLVVFG 300 (545)
Q Consensus 226 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~-~---~~~~~~r~~~~~~~~~-~~~iyv~G 300 (545)
..|++|++++ ++++++|||+||.+. ..++++++||+.++ +|+.++ . ..+|.+|.+|+++++. +++|||+|
T Consensus 384 ~~p~rr~g~~-~~~~~~iyv~GG~~~--~~~~~v~~yd~~~~--~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~G 458 (695)
T 2zwa_A 384 CPINRKFGDV-DVAGNDVFYMGGSNP--YRVNEILQLSIHYD--KIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIG 458 (695)
T ss_dssp CTTCCBSCEE-EECSSCEEEECCBSS--SBCCCEEEEEECSS--CEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEEC
T ss_pred CCCCCceeEE-EEECCEEEEECCCCC--CCcCcEEEEECCCC--eEEEeccCCCCCCCCccccceEEEEEccCCEEEEEc
Confidence 4566676654 448999999999865 67899999999998 999986 3 2489999999999883 55899999
Q ss_pred CCCCCc-ccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEe
Q 042793 301 GCGRQG-LLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREI 379 (545)
Q Consensus 301 G~~~~~-~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 379 (545)
|.+... .++++|+||+.++ +|+.++++ |.+|+.|+++++.+++|||+||.+... ++++||+. +++|+.+
T Consensus 459 G~~~~~~~~~dv~~yd~~t~--~W~~~~~~--p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~--t~~W~~~ 528 (695)
T 2zwa_A 459 GRKAPHQGLSDNWIFDMKTR--EWSMIKSL--SHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVT--EEIFKDV 528 (695)
T ss_dssp CBSSTTCBCCCCEEEETTTT--EEEECCCC--SBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETT--TTEEEEC
T ss_pred CCCCCCCccccEEEEeCCCC--cEEECCCC--CCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECC--CCceEEc
Confidence 988655 7899999999999 99999988 899999999886466999999986543 89999954 6699999
Q ss_pred cCC-CCCCCCCCcEEEEEC-C-cEEEEEcccCCCCCCccccCcEEEEeCCCCCCc------eEEeecCCCCCCCCCCCCC
Q 042793 380 PVT-WTPPSRLGHTLSVYG-G-RKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPC------WRCVTGSGMPGAGNPGGIA 450 (545)
Q Consensus 380 ~~~-~~p~~r~~~~~~~~~-~-~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~------W~~v~~~~~~~~~~~~g~~ 450 (545)
... .+|.+|.+|++++++ + ++||++||...++.. ..++++.||+. +++ |+.+..+ +
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~--~~~~v~~yd~~--~~~w~~~~~W~~~~~~-----------p 593 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTT--VSDKAIIFKYD--AENATEPITVIKKLQH-----------P 593 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSC--BCCEEEEEEEC--TTCSSCCEEEEEEEEC-----------G
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCe--eeCcEEEEEcc--CCccccceEEEEcCCC-----------C
Confidence 753 378899999987766 1 499999998665411 36899999999 777 8988764 3
Q ss_pred CCCCcceEEEEecCCEEEEEcCcCCCC--CCCCceEEEcCCCCCCceEEeccCCC----CCCCCCCceeEEeCCeeEEEE
Q 042793 451 PPPRLDHVAVSLPGGRILIFGGSVAGL--HSATQLYLLDPTEEKPTWRILNVPGR----PPRFAWGHSTCVVGGTRTIVL 524 (545)
Q Consensus 451 p~~r~~~~~~~~~~~~l~v~GG~~~~~--~~~~~v~~~d~~~~~~~W~~~~~~~~----~p~~r~~~~~~~~~~~~l~i~ 524 (545)
+.+|.+|+++++.+++|||+||.+... ...+++++||+. +++|+.+..... ++..+.+|+++++.+++|||+
T Consensus 594 ~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~--t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~ 671 (695)
T 2zwa_A 594 LFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL--SETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHII 671 (695)
T ss_dssp GGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT--TTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEE
T ss_pred CCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC--CCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEE
Confidence 588999988888339999999986443 357899999996 789997643221 122567898888866699999
Q ss_pred cCCC---CcccccccceeeeeccC
Q 042793 525 GGQT---GEEWMLSELHELSLVSK 545 (545)
Q Consensus 525 GG~~---~~~~~~~~~~~l~l~~~ 545 (545)
||.. +.+...|++|.||+..|
T Consensus 672 GGg~~cfsfGt~~n~i~~ldl~~~ 695 (695)
T 2zwa_A 672 GGGATCYGFGSVTNVGLKLIAIAK 695 (695)
T ss_dssp CCEEECTTSCEEECCCEEEEECCC
T ss_pred eCCccCcCccccccceEEEEEEcC
Confidence 9964 23556789999999765
No 14
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=5.9e-37 Score=299.89 Aligned_cols=266 Identities=18% Similarity=0.225 Sum_probs=216.1
Q ss_pred CCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCC--C-
Q 042793 229 PSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGR--Q- 305 (545)
Q Consensus 229 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~--~- 305 (545)
.+|.++. ..+.||++||. ++++||+.++ +|...+ .+.|.+|..|+++.+ +++|||+||... .
T Consensus 7 ~~r~~~~---~~~~i~~~GG~--------~~~~yd~~~~--~W~~~~-~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~ 71 (318)
T 2woz_A 7 IPRHGMF---VKDLILLVNDT--------AAVAYDPMEN--ECYLTA-LAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEEN 71 (318)
T ss_dssp SCCCCCS---EEEEEEEECSS--------EEEEEETTTT--EEEEEE-ECTTSCSSEEEEECS-SSCEEEEESSCC----
T ss_pred cccccce---ecchhhhcccc--------ceEEECCCCC--ceeccc-CCccCCccceEEEEE-CCEEEEECCcccCccc
Confidence 3555432 24689999994 5899999998 999743 344578998888766 568999999631 1
Q ss_pred ---cccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCC-CCCccCcEEEEecCCCCCceEEecC
Q 042793 306 ---GLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCAD-SGVLLSDTFLLDLSMEKPVWREIPV 381 (545)
Q Consensus 306 ---~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~~~~~~~W~~~~~ 381 (545)
...+++++||+.++ +|+.++++ |.+|..|+++.+ +++|||+||... ....++++++||+. +++|+.+..
T Consensus 72 ~~~~~~~~~~~~d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~--~~~W~~~~~ 144 (318)
T 2woz_A 72 KDQPLQSYFFQLDNVSS--EWVGLPPL--PSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPV--AAKWSEVKN 144 (318)
T ss_dssp ---CCCBEEEEEETTTT--EEEECSCB--SSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETT--TTEEEEECC
T ss_pred cCCCccccEEEEeCCCC--cEEECCCC--CccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCC--CCCEeECCC
Confidence 12345999999999 99999988 889999999888 559999999863 45678899999954 669999975
Q ss_pred CCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEE
Q 042793 382 TWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVS 461 (545)
Q Consensus 382 ~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~ 461 (545)
+|.+|.+|+++.+++ +||++||...... ..+++++||+. +++|++++.+ |.+|..|++++
T Consensus 145 --~p~~r~~~~~~~~~~-~iyv~GG~~~~~~---~~~~~~~yd~~--~~~W~~~~~~------------p~~r~~~~~~~ 204 (318)
T 2woz_A 145 --LPIKVYGHNVISHNG-MIYCLGGKTDDKK---CTNRVFIYNPK--KGDWKDLAPM------------KTPRSMFGVAI 204 (318)
T ss_dssp --CSSCEESCEEEEETT-EEEEECCEESSSC---BCCCEEEEETT--TTEEEEECCC------------SSCCBSCEEEE
T ss_pred --CCCcccccEEEEECC-EEEEEcCCCCCCC---ccceEEEEcCC--CCEEEECCCC------------CCCcccceEEE
Confidence 899999999999887 9999999865433 36899999999 8999999765 88999998887
Q ss_pred ecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCc--------ccc
Q 042793 462 LPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGE--------EWM 533 (545)
Q Consensus 462 ~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~--------~~~ 533 (545)
+ +++|||+||.+... ..+++++||++ +++|+.+ +.+|.+|.+|+++++ +++|||+||.+.. ...
T Consensus 205 ~-~~~iyv~GG~~~~~-~~~~~~~yd~~--~~~W~~~---~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~ 276 (318)
T 2woz_A 205 H-KGKIVIAGGVTEDG-LSASVEAFDLK--TNKWEVM---TEFPQERSSISLVSL-AGSLYAIGGFAMIQLESKEFAPTE 276 (318)
T ss_dssp E-TTEEEEEEEEETTE-EEEEEEEEETT--TCCEEEC---CCCSSCCBSCEEEEE-TTEEEEECCBCCBC----CCBCCB
T ss_pred E-CCEEEEEcCcCCCC-ccceEEEEECC--CCeEEEC---CCCCCcccceEEEEE-CCEEEEECCeeccCCCCceeccce
Confidence 7 99999999986432 46889999996 7899999 568889999999888 7899999998752 134
Q ss_pred cccceeeeecc
Q 042793 534 LSELHELSLVS 544 (545)
Q Consensus 534 ~~~~~~l~l~~ 544 (545)
.+++|+||+.+
T Consensus 277 ~~~v~~yd~~~ 287 (318)
T 2woz_A 277 VNDIWKYEDDK 287 (318)
T ss_dssp CCCEEEEETTT
T ss_pred eeeEEEEeCCC
Confidence 79999999875
No 15
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=7e-36 Score=297.29 Aligned_cols=259 Identities=18% Similarity=0.244 Sum_probs=204.2
Q ss_pred hhhcc--cCCcEEeccCCCCC-CCCCceeeEEECCEEEEEcCC-C---CCCCccCceEEEeCCCCCCceEEeccCCCC-C
Q 042793 210 LTTLE--AATWRKLTVGGTVE-PSRCNFSACAVGNRVVLFGGE-G---VNMQPMNDTFVLDLNSSNPEWQHVHVSSPP-P 281 (545)
Q Consensus 210 ~~~~~--~~~W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~-~---~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~-~ 281 (545)
.||+. +++|..++. +| .+|.+|++++++++||||||. . .....++++++||+.++ +|+.++ +++ .
T Consensus 35 ~~d~~~~~~~W~~~~~---~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~--~W~~~~--~~~p~ 107 (357)
T 2uvk_A 35 KLDTQAKDKKWTALAA---FPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN--SWVKLM--SHAPM 107 (357)
T ss_dssp EEETTSSSCCEEECCC---CTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTT--EEEECS--CCCSS
T ss_pred EEccccCCCCeeECCC---CCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCC--cEEECC--CCCCc
Confidence 67886 489999865 66 789999999999999999997 2 23356899999999998 999987 555 8
Q ss_pred CccceeEEEEcCCEEEEEcCCCCCc----------------------------------ccCcEEEEecCCCCCceEecc
Q 042793 282 GRWGHTLSCVNGSHLVVFGGCGRQG----------------------------------LLNDVFVLDLDAKPPTWREIS 327 (545)
Q Consensus 282 ~r~~~~~~~~~~~~iyv~GG~~~~~----------------------------------~~~~~~~yd~~t~~~~W~~~~ 327 (545)
+|.+|+++++ +++|||+||.+... .++++++||+.++ +|+.++
T Consensus 108 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~~ 184 (357)
T 2uvk_A 108 GMAGHVTFVH-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQ--QWSYAG 184 (357)
T ss_dssp CCSSEEEEEE-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTT--EEEEEE
T ss_pred ccccceEEEE-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCC--cEEECC
Confidence 9999998886 55999999986432 4589999999999 999998
Q ss_pred CCCCCCCCcc-ceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcc
Q 042793 328 GLAPPLPRSW-HSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGG 406 (545)
Q Consensus 328 ~~~~~~~r~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG 406 (545)
++ |.+|.. |+++.+ +++|||+||....+...++++.||+++.+++|+.+...+.|.+|.+|+++++++ +||++||
T Consensus 185 ~~--p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG 260 (357)
T 2uvk_A 185 ES--PWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND-SLIFAGG 260 (357)
T ss_dssp EC--SSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT-EEEEECC
T ss_pred CC--CCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC-EEEEEcC
Confidence 77 665544 887777 569999999866556678999999766788999997633445577888988988 9999999
Q ss_pred cCCCCC-------------CccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCc
Q 042793 407 LAKSGP-------------LRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGS 473 (545)
Q Consensus 407 ~~~~~~-------------~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~ 473 (545)
....+. ......++++||++ +++|+++..+ |.+|..|+++.+ +++|||+||.
T Consensus 261 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~------------p~~r~~~~~~~~-~~~i~v~GG~ 325 (357)
T 2uvk_A 261 AGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH--NGKWDKSGEL------------SQGRAYGVSLPW-NNSLLIIGGE 325 (357)
T ss_dssp EECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEEC------------SSCCBSSEEEEE-TTEEEEEEEE
T ss_pred ccccCCcccccccceeccccccceeeEEEEecC--CCceeeCCCC------------CCCcccceeEEe-CCEEEEEeee
Confidence 754321 00124689999999 8899999766 889999988776 9999999998
Q ss_pred CCCCCCCCceEEEcCCCCCCceEEec
Q 042793 474 VAGLHSATQLYLLDPTEEKPTWRILN 499 (545)
Q Consensus 474 ~~~~~~~~~v~~~d~~~~~~~W~~~~ 499 (545)
+......++++.|+++ +++|..+.
T Consensus 326 ~~~~~~~~~v~~l~~~--~~~~~~~~ 349 (357)
T 2uvk_A 326 TAGGKAVTDSVLITVK--DNKVTVQN 349 (357)
T ss_dssp CGGGCEEEEEEEEEC---CCSCEEEC
T ss_pred CCCCCEeeeEEEEEEc--CcEeEeee
Confidence 7666567999999997 78899884
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.98 E-value=2e-31 Score=285.93 Aligned_cols=260 Identities=16% Similarity=0.207 Sum_probs=201.5
Q ss_pred hhhhcccCCcEEec-c--CCCCCCCCCceeeEEE--CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCc
Q 042793 209 ELTTLEAATWRKLT-V--GGTVEPSRCNFSACAV--GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGR 283 (545)
Q Consensus 209 ~~~~~~~~~W~~~~-~--~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r 283 (545)
..||+.+++|..++ . .+.+|.+|.+|+++++ +++|||+||.+.....++++|+||+.++ +|+.+. ++|.+|
T Consensus 415 ~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~--~W~~~~--~~p~~R 490 (695)
T 2zwa_A 415 LQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR--EWSMIK--SLSHTR 490 (695)
T ss_dssp EEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT--EEEECC--CCSBCC
T ss_pred EEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC--cEEECC--CCCCCc
Confidence 36899999999987 3 3567899999999999 9999999998766667899999999998 999875 899999
Q ss_pred cceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCC-CCCCCCccceEEEEcC--CEEEEEcCCCCCC-C
Q 042793 284 WGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGL-APPLPRSWHSSCTLDG--TKLIVSGGCADSG-V 359 (545)
Q Consensus 284 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~-~~~~~r~~~~~~~~~~--~~iyv~GG~~~~~-~ 359 (545)
++|+++++.+++|||+||.+... ++++||+.++ +|+.+++. ..|.+|..|+++++++ ++|||+||....+ .
T Consensus 491 ~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd~~t~--~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~ 565 (695)
T 2zwa_A 491 FRHSACSLPDGNVLILGGVTEGP---AMLLYNVTEE--IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTT 565 (695)
T ss_dssp BSCEEEECTTSCEEEECCBCSSC---SEEEEETTTT--EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSC
T ss_pred ccceEEEEcCCEEEEECCCCCCC---CEEEEECCCC--ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCe
Confidence 99999986456899999987655 9999999999 99999862 1388999999887751 5899999986554 6
Q ss_pred ccCcEEEEecCCCCCc------eEEecCCCC-CCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCce
Q 042793 360 LLSDTFLLDLSMEKPV------WREIPVTWT-PPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCW 432 (545)
Q Consensus 360 ~~~~~~~~d~~~~~~~------W~~~~~~~~-p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W 432 (545)
.++++++||+.++ + |+.+.. + +.+|.+|+++++++++|||+||....... ...++++.||+. +++|
T Consensus 566 ~~~~v~~yd~~~~--~w~~~~~W~~~~~--~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~-~~~~~v~~yd~~--t~~W 638 (695)
T 2zwa_A 566 VSDKAIIFKYDAE--NATEPITVIKKLQ--HPLFQRYGSQIKYITPRKLLIVGGTSPSGLF-DRTNSIISLDPL--SETL 638 (695)
T ss_dssp BCCEEEEEEECTT--CSSCCEEEEEEEE--CGGGCCBSCEEEEEETTEEEEECCBCSSCCC-CTTTSEEEEETT--TTEE
T ss_pred eeCcEEEEEccCC--ccccceEEEEcCC--CCCCCcccceEEEeCCCEEEEECCccCCCCC-CCCCeEEEEECC--CCeE
Confidence 7899999997644 6 888875 4 57899999999983499999998654321 136899999999 8999
Q ss_pred EEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCC---CCCCCCceEEEcCC
Q 042793 433 RCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVA---GLHSATQLYLLDPT 489 (545)
Q Consensus 433 ~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~---~~~~~~~v~~~d~~ 489 (545)
+.+.... . ..+..++.+.+|+++.+.+++|||+||... -+...+++|.+|+.
T Consensus 639 ~~~~~p~---~--~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~~n~i~~ldl~ 693 (695)
T 2zwa_A 639 TSIPISR---R--IWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNVGLKLIAI 693 (695)
T ss_dssp EECCCCH---H--HHHHSCCCCSSCEEECC---CEEEECCEEECTTSCEEECCCEEEEEC
T ss_pred EEeeccc---c--ccCCCCccceeeeEEEeCCCEEEEEeCCccCcCccccccceEEEEEE
Confidence 9653210 0 000012255778888775559999999641 12234689998874
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.98 E-value=1.6e-31 Score=286.74 Aligned_cols=302 Identities=17% Similarity=0.125 Sum_probs=219.2
Q ss_pred hhhhcccCCcEEeccCCCCCCCCCceeeEEE--CCEEEEEcCCCCCC-----CccCceEEEeCCCCCCceEEeccCCCCC
Q 042793 209 ELTTLEAATWRKLTVGGTVEPSRCNFSACAV--GNRVVLFGGEGVNM-----QPMNDTFVLDLNSSNPEWQHVHVSSPPP 281 (545)
Q Consensus 209 ~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~-----~~~~~~~~~d~~t~~~~W~~~~~~~~~~ 281 (545)
..||+..++|..+++ .|+..++++++ +++||++||..... ...+++++||+.++ +|+.+. .+|.
T Consensus 169 ~~~dp~~~~W~~~~~-----~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~--~w~~~~--~~~~ 239 (656)
T 1k3i_A 169 TAPQPGLGRWGPTID-----LPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG--IVSDRT--VTVT 239 (656)
T ss_dssp CCCCTTSCEEEEEEE-----CSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC--CBCCCE--EEEC
T ss_pred ccCCCCCCeeeeecc-----CCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCC--cEEeCc--ccCC
Confidence 378999999998854 23455666666 89999999975431 13457999999998 999776 5666
Q ss_pred Ccccee--EEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCC
Q 042793 282 GRWGHT--LSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGV 359 (545)
Q Consensus 282 ~r~~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~ 359 (545)
+|..|+ ++++.+++||++||.... ++++||+.++ +|+++++| |.+|..|+++++.+++|||+||..+...
T Consensus 240 ~~~~~~~~~~~~~~g~lyv~GG~~~~----~v~~yd~~t~--~W~~~~~~--~~~R~~~s~~~~~dg~iyv~GG~~~~~~ 311 (656)
T 1k3i_A 240 KHDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSSD--SWIPGPDM--QVARGYQSSATMSDGRVFTIGGSWSGGV 311 (656)
T ss_dssp SCCCSSCEEEECTTSCEEEECSSSTT----CEEEEEGGGT--EEEECCCC--SSCCSSCEEEECTTSCEEEECCCCCSSS
T ss_pred CCCCccccccCCCCCCEEEeCCCCCC----ceEEecCcCC--ceeECCCC--CccccccceEEecCCeEEEEeCcccCCc
Confidence 665554 444556799999997653 7999999999 99999988 8899999998884559999999655556
Q ss_pred ccCcEEEEecCCCCCceEEecCC---CCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEee
Q 042793 360 LLSDTFLLDLSMEKPVWREIPVT---WTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVT 436 (545)
Q Consensus 360 ~~~~~~~~d~~~~~~~W~~~~~~---~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~ 436 (545)
.++++++||+. +++|+.++.. +++..+.. +++..++ ++|++||.++........++++.||+. +++|....
T Consensus 312 ~~~~~e~yd~~--t~~W~~~~~~~~~p~~~~~~~-~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~--~~~w~~~~ 385 (656)
T 1k3i_A 312 FEKNGEVYSPS--SKTWTSLPNAKVNPMLTADKQ-GLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTS--GSGDVKSA 385 (656)
T ss_dssp CCCCEEEEETT--TTEEEEETTSCSGGGCCCCTT-GGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECS--TTCEEEEE
T ss_pred ccccceEeCCC--CCcceeCCCcccccccccccc-ceeecCC-ceEEEECCCCcEEEecCccceeeeecC--CcceeecC
Confidence 78899999954 6699998531 24444442 3333455 999999976532111125789999999 77887644
Q ss_pred cCCCCCCCCCCCC---CCCCCcceEEEE--ecCCEEEEEcCcCC--CCCCCC---ceEEEcCCCCCCceEEeccCCCCCC
Q 042793 437 GSGMPGAGNPGGI---APPPRLDHVAVS--LPGGRILIFGGSVA--GLHSAT---QLYLLDPTEEKPTWRILNVPGRPPR 506 (545)
Q Consensus 437 ~~~~~~~~~~~g~---~p~~r~~~~~~~--~~~~~l~v~GG~~~--~~~~~~---~v~~~d~~~~~~~W~~~~~~~~~p~ 506 (545)
... .. .+.++..+++++ ..+++|||+||.+. +....+ .+++||+. +++|..+. .+.+|.
T Consensus 386 ~~~--------~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~--~~~W~~~~-~~~mp~ 454 (656)
T 1k3i_A 386 GKR--------QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG--TSPNTVFA-SNGLYF 454 (656)
T ss_dssp EEC--------EETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTT--SCCEEEEC-TTCCSS
T ss_pred Ccc--------ccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCC--CCCeeEEc-cCCCCC
Confidence 320 00 012334455554 34899999999642 122334 78899996 67899985 247899
Q ss_pred CCCCceeEEeCCeeEEEEcCCCCc-----ccccccceeeeecc
Q 042793 507 FAWGHSTCVVGGTRTIVLGGQTGE-----EWMLSELHELSLVS 544 (545)
Q Consensus 507 ~r~~~~~~~~~~~~l~i~GG~~~~-----~~~~~~~~~l~l~~ 544 (545)
+|..|+++++.+++|||+||.+.. ....+++++||+..
T Consensus 455 ~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 455 ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence 999999988878999999997632 24578999999864
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.97 E-value=4.8e-30 Score=275.31 Aligned_cols=284 Identities=16% Similarity=0.095 Sum_probs=205.3
Q ss_pred hhhhcccCCcEEeccCCCCCCCCCce--eeE-EECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccc
Q 042793 209 ELTTLEAATWRKLTVGGTVEPSRCNF--SAC-AVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWG 285 (545)
Q Consensus 209 ~~~~~~~~~W~~~~~~~~~p~~r~~~--~~~-~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~ 285 (545)
.+||+.+++|..++. +|.+|..+ +++ ..+++||++||.... ++++||+.++ +|+.+. +|+.+|+.
T Consensus 222 ~~yd~~t~~w~~~~~---~~~~~~~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~--~W~~~~--~~~~~R~~ 289 (656)
T 1k3i_A 222 SSWDPSTGIVSDRTV---TVTKHDMFCPGISMDGNGQIVVTGGNDAK-----KTSLYDSSSD--SWIPGP--DMQVARGY 289 (656)
T ss_dssp EEECTTTCCBCCCEE---EECSCCCSSCEEEECTTSCEEEECSSSTT-----CEEEEEGGGT--EEEECC--CCSSCCSS
T ss_pred EEEeCCCCcEEeCcc---cCCCCCCccccccCCCCCCEEEeCCCCCC-----ceEEecCcCC--ceeECC--CCCccccc
Confidence 479999999998864 44455444 333 358999999997543 7999999998 999876 89999999
Q ss_pred eeEEEEcCCEEEEEcCC-CCCcccCcEEEEecCCCCCceEeccCCC---CCCCCccceEEEEcCCEEEEEcCCCCC---C
Q 042793 286 HTLSCVNGSHLVVFGGC-GRQGLLNDVFVLDLDAKPPTWREISGLA---PPLPRSWHSSCTLDGTKLIVSGGCADS---G 358 (545)
Q Consensus 286 ~~~~~~~~~~iyv~GG~-~~~~~~~~~~~yd~~t~~~~W~~~~~~~---~~~~r~~~~~~~~~~~~iyv~GG~~~~---~ 358 (545)
|+++++.+++|||+||. +.....+++++||+.++ +|+.++... .+.+|.. +++.. ++++|++||.+.. .
T Consensus 290 ~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~--~W~~~~~~~~~p~~~~~~~-~~~~~-~~~iyv~Gg~~g~~~~~ 365 (656)
T 1k3i_A 290 QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK--TWTSLPNAKVNPMLTADKQ-GLYRS-DNHAWLFGWKKGSVFQA 365 (656)
T ss_dssp CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT--EEEEETTSCSGGGCCCCTT-GGGTT-TCSCCEEECGGGCEEEC
T ss_pred cceEEecCCeEEEEeCcccCCcccccceEeCCCCC--cceeCCCcccccccccccc-ceeec-CCceEEEECCCCcEEEe
Confidence 99988845589999994 44457889999999999 999985321 1333332 33333 5699999997432 1
Q ss_pred CccCcEEEEecCCCCCceEEecCC-CC----CCCCCCcEEEEE--CCcEEEEEcccCCCCCCccccC---cEEEEeCCCC
Q 042793 359 VLLSDTFLLDLSMEKPVWREIPVT-WT----PPSRLGHTLSVY--GGRKILMFGGLAKSGPLRFRSS---DVFTMDLSEE 428 (545)
Q Consensus 359 ~~~~~~~~~d~~~~~~~W~~~~~~-~~----p~~r~~~~~~~~--~~~~lyi~GG~~~~~~~~~~~~---~i~~~d~~~~ 428 (545)
...++++.||+. ++.|...... .. ++++..++++.+ .+++||++||....... ...+ .+++||+.
T Consensus 366 ~~~~~v~~yd~~--~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~-~~~~~~~~v~~yd~~-- 440 (656)
T 1k3i_A 366 GPSTAMNWYYTS--GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS-DATTNAHIITLGEPG-- 440 (656)
T ss_dssp CSSSEEEEEECS--TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS-BCCCCEEEEECCSTT--
T ss_pred cCccceeeeecC--CcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC-CcCCcceEEEcCCCC--
Confidence 245789999955 5577654321 11 223445555542 23499999997532110 0123 78899999
Q ss_pred CCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCC-----CCCCCceEEEcCCCCCCceEEeccCCC
Q 042793 429 EPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAG-----LHSATQLYLLDPTEEKPTWRILNVPGR 503 (545)
Q Consensus 429 ~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~-----~~~~~~v~~~d~~~~~~~W~~~~~~~~ 503 (545)
+++|..+.. +.+|.+|..|+++++.+++|||+||.+.+ ....+++++||++ +++|+.+ +.
T Consensus 441 ~~~W~~~~~----------~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~--t~~W~~~---~~ 505 (656)
T 1k3i_A 441 TSPNTVFAS----------NGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE--QDTFYKQ---NP 505 (656)
T ss_dssp SCCEEEECT----------TCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG--GTEEEEC---CC
T ss_pred CCCeeEEcc----------CCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC--CCceeec---CC
Confidence 889999861 13589999998888879999999997532 2346889999996 7899998 56
Q ss_pred CCCCCCCceeEEe-CCeeEEEEcCCC
Q 042793 504 PPRFAWGHSTCVV-GGTRTIVLGGQT 528 (545)
Q Consensus 504 ~p~~r~~~~~~~~-~~~~l~i~GG~~ 528 (545)
+|.+|.+|+++++ .+++|||+||..
T Consensus 506 ~~~~R~~hs~a~ll~dg~v~v~GG~~ 531 (656)
T 1k3i_A 506 NSIVRVYHSISLLLPDGRVFNGGGGL 531 (656)
T ss_dssp CSSCCCTTEEEEECTTSCEEEEECCC
T ss_pred CCCccccccHhhcCCCcEEEecCCCC
Confidence 8899999987655 588999999964
No 19
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.37 E-value=2.6e-12 Score=103.22 Aligned_cols=80 Identities=31% Similarity=0.498 Sum_probs=72.9
Q ss_pred CCcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEE
Q 042793 1 MRDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHV 80 (545)
Q Consensus 1 ~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~ 80 (545)
.|+++|++|+++.+|+++. .++...+.+++++..++++..++++++|||+.+|+.+++.|++|++|.+.++
T Consensus 30 Gy~~~e~~G~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~pi~d~~G~~~~~ 100 (109)
T 1n9l_A 30 GYGPDEVLGHNCRFLQGEG---------TDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGRVSKF 100 (109)
T ss_dssp CCCHHHHTTSCGGGGCCTT---------CCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEE
T ss_pred CcCHHHHcCCCchhcCCCC---------CCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEE
Confidence 3678899999988777654 7778889999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeee
Q 042793 81 IGIQFFTEA 89 (545)
Q Consensus 81 i~~~~Dite 89 (545)
+++++|||+
T Consensus 101 v~~~~DITe 109 (109)
T 1n9l_A 101 VGVQVDVTS 109 (109)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999999995
No 20
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.36 E-value=1.1e-12 Score=120.59 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=105.3
Q ss_pred CCcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEE
Q 042793 1 MRDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHV 80 (545)
Q Consensus 1 ~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~ 80 (545)
.++.+|++|+++..+..+. ......+.+++.+..++.+..|+..++|||+.+|+.+++.|++|++|.+.++
T Consensus 23 Gy~~~el~G~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~p~~d~~g~~~~~ 93 (227)
T 3ewk_A 23 RYGREELVGQDHRIVNSGY---------HGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDSTIVPLMDNAGKPRQY 93 (227)
T ss_dssp TCCHHHHTTSBGGGGCCSC---------SCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEEEEEEEECSSSCEEEE
T ss_pred CcCHHHHcCCCHHHcCCCC---------CCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeeeEEEEEEcCCCCEEEE
Confidence 3678899999887666544 6677888889999999999999999999999999999999999999999999
Q ss_pred EEEeeeeeecccCCCCCCchhHHHhhhhhhhhccccc-CCCcccCCCC-ccccccCcccc-hhhHHHHHhhccCCh
Q 042793 81 IGIQFFTEANVDLGPVPGYPVKEFLKSSERQRSFFSG-NRTFPIGDRN-VCREVCGIFQL-SDEVISLKILSWLSP 153 (545)
Q Consensus 81 i~~~~Dite~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~-~~~~~~~~~~l-p~~~~~~~~~~~l~~ 153 (545)
+++.+|||++|+. .+++.+.+..+....+. +..++++... +|++.+.+.|+ ++|+++..+..+.++
T Consensus 94 ~~~~~DIT~~k~~-------e~~l~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~ 162 (227)
T 3ewk_A 94 ISIRRDITAQKEA-------EAQLARLKQAMDANSEMILLTDRAGRIIYANPALCRFSGMAEGELLGQSPSILDSP 162 (227)
T ss_dssp EEEEEECTTTTHH-------HHHHHHHHHHHHTCCSEEEEECTTSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCT
T ss_pred EEEEEehhhHHHH-------HHHHHHHHHHHhcCcCeEEEEcCCCcEEEEchHHHHHhCCCHHHHcCCChhhccCC
Confidence 9999999999943 12222222233322222 4556666664 89999999999 788887555555544
No 21
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.18 E-value=6.7e-11 Score=98.35 Aligned_cols=82 Identities=26% Similarity=0.348 Sum_probs=70.2
Q ss_pred CCcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEE
Q 042793 1 MRDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHV 80 (545)
Q Consensus 1 ~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~ 80 (545)
.++++|++|+++.++..++ ......+.+...+..+..+..+++.++|||+.+|+.+++.|+.+++ +.++
T Consensus 36 G~~~~el~g~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~~--~~~~ 104 (132)
T 2pr5_A 36 GYETEEILGKNCRFLQGKH---------TDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIED--KTYF 104 (132)
T ss_dssp SCCHHHHTTSCGGGGCCTT---------CCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEEETT--EEEE
T ss_pred CcCHHHHcCCChhhhCCCC---------CCHHHHHHHHHHHHcCCCeEEEEEEEecCCCeeeeEEEEEeccCCC--eeEE
Confidence 3678899999877666544 6677778888889889999999999999999999999999999865 7889
Q ss_pred EEEeeeeeecccC
Q 042793 81 IGIQFFTEANVDL 93 (545)
Q Consensus 81 i~~~~Dite~~~~ 93 (545)
+++.+|||++|+.
T Consensus 105 ~~~~~DITe~k~~ 117 (132)
T 2pr5_A 105 VGIQNDITKQKEY 117 (132)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEEeCcHHHHH
Confidence 9999999999954
No 22
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.17 E-value=1.9e-10 Score=93.85 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=71.6
Q ss_pred CCcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEE
Q 042793 1 MRDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHV 80 (545)
Q Consensus 1 ~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~ 80 (545)
.++++|++|+++..+..++ ......+.+...+..++.+..++..++|||+.+|+.+++.|++|++|.+.++
T Consensus 39 G~~~~elig~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~ 109 (120)
T 2gj3_A 39 GYGSEEVLGKNESILSNGT---------TPRLVYQALWGRLAQKKPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYY 109 (120)
T ss_dssp CCCTTGGGGCBGGGGCCTT---------SCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEE
T ss_pred CcCHHHHcCCCHHHcCCCC---------CCHHHHHHHHHHHHcCCCEEEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEE
Confidence 3678899999877665444 5666677888889999999999999999999999999999999999999999
Q ss_pred EEEeeeeeecc
Q 042793 81 IGIQFFTEANV 91 (545)
Q Consensus 81 i~~~~Dite~~ 91 (545)
+++.+|||++|
T Consensus 110 v~~~~DITe~k 120 (120)
T 2gj3_A 110 LGMHRDTSELH 120 (120)
T ss_dssp EEEEEECCSCC
T ss_pred EEEeccCcccC
Confidence 99999999876
No 23
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.02 E-value=4.5e-08 Score=99.12 Aligned_cols=287 Identities=13% Similarity=0.142 Sum_probs=147.2
Q ss_pred cccchhh----HHHHHhhccCChhhhhhHHHhhHHHHHhcCChhhHHHHhhhcccCCce------------eceeccCC-
Q 042793 135 IFQLSDE----VISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWRMVCQNAWGSETT------------RVLETVPG- 197 (545)
Q Consensus 135 ~~~lp~~----~~~~~~~~~l~~~~~~~~~~vcr~~~~l~~s~~~~~~~~~~~~~~~~~------------~~~~~~~~- 197 (545)
|..||+| ++ ++|+++|++.++..++.|||+|+.++.++.+|+..|...+..... +.+...+.
T Consensus 11 ~~~lp~e~~~~~~-~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 89 (435)
T 1p22_A 11 ITALPARGLDHIA-ENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPD 89 (435)
T ss_dssp HHHTGGGTCHHHH-HHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC------
T ss_pred HHHCCcchHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCCCC
Confidence 5668999 98 689999999999999999999999999999999998765422110 11111111
Q ss_pred --ccccccc-hhhhhhh---hcccCCcEEeccCCCC----CCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCC
Q 042793 198 --AKRLGWG-RLARELT---TLEAATWRKLTVGGTV----EPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSS 267 (545)
Q Consensus 198 --~~~~~w~-~~~~~~~---~~~~~~W~~~~~~~~~----p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~ 267 (545)
.+...|. .++.... ......|..-...... ......-.++..++..++.|+.+. .+.++|..+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~dg------~i~iwd~~~~ 163 (435)
T 1p22_A 90 GNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDN------TIKIWDKNTL 163 (435)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESSS------CEEEEESSSC
T ss_pred CCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCCC------eEEEEeCCCC
Confidence 1111221 1111111 1122345432110000 011112234455677777777542 6889998776
Q ss_pred CCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCE
Q 042793 268 NPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTK 347 (545)
Q Consensus 268 ~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~ 347 (545)
+-...- ........+..+++ .+++.|+.+ ..+.++|..+. .-...-.. ....-.++.+.+ .
T Consensus 164 --~~~~~~----~~h~~~v~~l~~~~-~~l~sg~~d-----g~i~vwd~~~~--~~~~~~~~----h~~~v~~l~~~~-~ 224 (435)
T 1p22_A 164 --ECKRIL----TGHTGSVLCLQYDE-RVIITGSSD-----STVRVWDVNTG--EMLNTLIH----HCEAVLHLRFNN-G 224 (435)
T ss_dssp --CEEEEE----CCCSSCEEEEECCS-SEEEEEETT-----SCEEEEESSSC--CEEEEECC----CCSCEEEEECCT-T
T ss_pred --eEEEEE----cCCCCcEEEEEECC-CEEEEEcCC-----CeEEEEECCCC--cEEEEEcC----CCCcEEEEEEcC-C
Confidence 332211 11112223334445 566777654 35889999887 32211111 111122333444 4
Q ss_pred EEEEcCCCCCCCccCcEEEEecCCCCCceE-EecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 348 LIVSGGCADSGVLLSDTFLLDLSMEKPVWR-EIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 348 iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~-~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.++.|+.+ ..+.++|+........ .... .......++..++ ..++.|+. ...+..+|+.
T Consensus 225 ~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~-~~l~s~~~---------dg~i~vwd~~ 284 (435)
T 1p22_A 225 MMVTCSKD------RSIAVWDMASPTDITLRRVLV----GHRAAVNVVDFDD-KYIVSASG---------DRTIKVWNTS 284 (435)
T ss_dssp EEEEEETT------SCEEEEECSSSSCCEEEEEEC----CCSSCEEEEEEET-TEEEEEET---------TSEEEEEETT
T ss_pred EEEEeeCC------CcEEEEeCCCCCCceeeeEec----CCCCcEEEEEeCC-CEEEEEeC---------CCeEEEEECC
Confidence 56666642 3588888754322211 1111 1111122333445 45556654 3668888987
Q ss_pred CCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCC
Q 042793 427 EEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTE 490 (545)
Q Consensus 427 ~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~ 490 (545)
+.+-... . ......-.++.. ++.+++.|+.+ +.+.+||+.+
T Consensus 285 --~~~~~~~--~------------~~~~~~v~~~~~-~~~~l~~g~~d------g~i~iwd~~~ 325 (435)
T 1p22_A 285 --TCEFVRT--L------------NGHKRGIACLQY-RDRLVVSGSSD------NTIRLWDIEC 325 (435)
T ss_dssp --TCCEEEE--E------------ECCSSCEEEEEE-ETTEEEEEETT------SCEEEEETTT
T ss_pred --cCcEEEE--E------------cCCCCcEEEEEe-CCCEEEEEeCC------CeEEEEECCC
Confidence 4332211 1 111112233444 56677777754 5689999863
No 24
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.02 E-value=7.9e-10 Score=93.16 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=72.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeeeecccCCCCCCchhH
Q 042793 23 KRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEANVDLGPVPGYPVK 102 (545)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite~~~~~~~~~~~~~ 102 (545)
-+.||++.....+.+...+..+.++..|++.+++||+.+|+.....|+.|++|.+.+++|+.+|||++|+. .+
T Consensus 58 ~~ihpdD~~~~~~~~~~~~~~~~~~~~e~r~~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~-------E~ 130 (142)
T 3mr0_A 58 ESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRD-------ED 130 (142)
T ss_dssp CCBCTTTHHHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHH-------HH
T ss_pred hhcCHHHHHHHHHHHHHHHhCCCceEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHH-------HH
Confidence 45789888888888999999999999999999999999999999999999999999999999999999954 33
Q ss_pred HHhhhhhhhhc
Q 042793 103 EFLKSSERQRS 113 (545)
Q Consensus 103 ~~~~~~~r~~~ 113 (545)
++.+++++++.
T Consensus 131 ~L~~~~~~l~~ 141 (142)
T 3mr0_A 131 ALRVSREELRR 141 (142)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 44446666654
No 25
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=98.97 E-value=2.2e-09 Score=88.07 Aligned_cols=84 Identities=21% Similarity=0.387 Sum_probs=71.7
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
++.++++|+++..+..++ ........+...+..+..+..++...+++|..+|+.+++.|+.+++|.+.+++
T Consensus 35 ~~~~e~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~ 105 (128)
T 3t50_A 35 YEADEVMGRNCRFLQGHG---------TDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPVHNANGRLQHFV 105 (128)
T ss_dssp CCHHHHTTSCGGGGCCTT---------SCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEE
T ss_pred cCHHHHcCCCHhhhcCCc---------cCHHHHHHHHHHHHcCCCceeEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEE
Confidence 456778888766555444 67788888889999999999999999999999999999999999999999999
Q ss_pred EEeeeeeecccCC
Q 042793 82 GIQFFTEANVDLG 94 (545)
Q Consensus 82 ~~~~Dite~~~~~ 94 (545)
++.+|||++|++|
T Consensus 106 ~~~~DITe~k~~e 118 (128)
T 3t50_A 106 SSQLDVTLELVPR 118 (128)
T ss_dssp EEEEECHHHHC--
T ss_pred EEEEEcchhhhhh
Confidence 9999999999663
No 26
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.96 E-value=1.2e-07 Score=96.35 Aligned_cols=284 Identities=16% Similarity=0.204 Sum_probs=150.3
Q ss_pred CcccchhhHHHHHhhccCChhhhhhHHHhhHHHHHhcCChhhHHHHhhhcccCCceecee---ccCCccccccchhhhhh
Q 042793 134 GIFQLSDEVISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWRMVCQNAWGSETTRVLE---TVPGAKRLGWGRLAREL 210 (545)
Q Consensus 134 ~~~~lp~~~~~~~~~~~l~~~~~~~~~~vcr~~~~l~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~w~~~~~~~ 210 (545)
.+..||+|++ .+|+++|++.++..++.|||+|+.++.++.+|+..|....-........ ..+......|...+...
T Consensus 18 ~~~~lp~e~~-~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~~ 96 (445)
T 2ovr_B 18 FISLLPKELA-LYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ 96 (445)
T ss_dssp TTTSSCHHHH-HHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHH
T ss_pred hhHHCCHHHH-HHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhhh
Confidence 3667899999 6999999999999999999999999999999999986543211111100 11122334566554433
Q ss_pred hhcccCCcEEeccCC--CCCCCC-CceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCcccee
Q 042793 211 TTLEAATWRKLTVGG--TVEPSR-CNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHT 287 (545)
Q Consensus 211 ~~~~~~~W~~~~~~~--~~p~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~ 287 (545)
+.. ...|..-.... ...... .-..++...+..++.|+.+. .+.++|+.+. +-... +......-.
T Consensus 97 ~~~-~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg------~i~vwd~~~~--~~~~~----~~~h~~~v~ 163 (445)
T 2ovr_B 97 HRI-DTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDN------TLKVWSAVTG--KCLRT----LVGHTGGVW 163 (445)
T ss_dssp HHH-HHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTS------CEEEEETTTC--CEEEE----CCCCSSCEE
T ss_pred hhh-hhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCC------cEEEEECCCC--cEEEE----EcCCCCCEE
Confidence 322 23343221100 000000 11233444555666666542 6889998765 32211 111112223
Q ss_pred EEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEe-ccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEE
Q 042793 288 LSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWRE-ISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFL 366 (545)
Q Consensus 288 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~-~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 366 (545)
+..+.++ +++.|+.+ ..+.++|+.+. .-.. +.. . ...-.++...+ ..++.|+.+ ..+.+
T Consensus 164 ~~~~~~~-~l~s~~~d-----g~i~vwd~~~~--~~~~~~~~---h--~~~v~~~~~~~-~~l~s~s~d------g~i~~ 223 (445)
T 2ovr_B 164 SSQMRDN-IIISGSTD-----RTLKVWNAETG--ECIHTLYG---H--TSTVRCMHLHE-KRVVSGSRD------ATLRV 223 (445)
T ss_dssp EEEEETT-EEEEEETT-----SCEEEEETTTT--EEEEEECC---C--SSCEEEEEEET-TEEEEEETT------SEEEE
T ss_pred EEEecCC-EEEEEeCC-----CeEEEEECCcC--cEEEEECC---C--CCcEEEEEecC-CEEEEEeCC------CEEEE
Confidence 3344554 66667654 35889999887 3221 211 1 11122334445 445556542 35888
Q ss_pred EecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCC
Q 042793 367 LDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNP 446 (545)
Q Consensus 367 ~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~ 446 (545)
+|+.+...... +.. . .....++.+++ ..++.|+. ...+..+|+. +.+ .+...
T Consensus 224 wd~~~~~~~~~-~~~--~---~~~v~~~~~~~-~~l~~~~~---------dg~i~iwd~~--~~~--~~~~~-------- 275 (445)
T 2ovr_B 224 WDIETGQCLHV-LMG--H---VAAVRCVQYDG-RRVVSGAY---------DFMVKVWDPE--TET--CLHTL-------- 275 (445)
T ss_dssp EESSSCCEEEE-EEC--C---SSCEEEEEECS-SCEEEEET---------TSCEEEEEGG--GTE--EEEEE--------
T ss_pred EECCCCcEEEE-EcC--C---cccEEEEEECC-CEEEEEcC---------CCEEEEEECC--CCc--EeEEe--------
Confidence 99764422222 211 1 11122334455 56666664 3567888877 332 22222
Q ss_pred CCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCC
Q 042793 447 GGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTE 490 (545)
Q Consensus 447 ~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~ 490 (545)
......-.++.. ++..++.|+.+ +.+.+||+.+
T Consensus 276 ----~~~~~~v~~~~~-~~~~l~~~~~d------~~i~i~d~~~ 308 (445)
T 2ovr_B 276 ----QGHTNRVYSLQF-DGIHVVSGSLD------TSIRVWDVET 308 (445)
T ss_dssp ----CCCSSCEEEEEE-CSSEEEEEETT------SCEEEEETTT
T ss_pred ----cCCCCceEEEEE-CCCEEEEEeCC------CeEEEEECCC
Confidence 111112234444 67777777754 5689999863
No 27
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=98.96 E-value=7.6e-10 Score=89.57 Aligned_cols=82 Identities=10% Similarity=0.076 Sum_probs=68.0
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecC-CCCEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGD-DETITHV 80 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~-~g~~~~~ 80 (545)
++++|++|+++..+ .||++.....+.+.+.+..+..+..+++.++|||+.+|+.++..|+.|+ +|.+.++
T Consensus 34 y~~~el~g~~~~~~---------~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~~~~~~~~~d~~~g~~~~i 104 (117)
T 3f1p_A 34 YHPEELLGRSAYEF---------YHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCI 104 (117)
T ss_dssp CCHHHHTTSBGGGG---------BCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEEEEEEEEEEEEETTTTEEEEE
T ss_pred CCHHHHcCCchhhe---------ECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEEEEEEeeEEEECCCCCCceEE
Confidence 56777777764432 3455666777788888888888888999999999999999999999997 7888999
Q ss_pred EEEeeeeeeccc
Q 042793 81 IGIQFFTEANVD 92 (545)
Q Consensus 81 i~~~~Dite~~~ 92 (545)
+++.+|||++++
T Consensus 105 v~~~~DITer~~ 116 (117)
T 3f1p_A 105 MCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEECSCCBC
T ss_pred EEEeeecccccc
Confidence 999999999984
No 28
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=98.92 E-value=1.6e-09 Score=101.40 Aligned_cols=82 Identities=27% Similarity=0.453 Sum_probs=69.8
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
++.+|++|+++.++..++ ........+...+..+.++..+++.+++||+.+|+.+++.|+.|++|.+.+++
T Consensus 101 ~~~~el~g~~~~~l~~~~---------~~~~~~~~~~~~l~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v 171 (258)
T 3p7n_A 101 YSEEECVGRNCRFLAGSG---------TEPWLTDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIYDDDDELLYFL 171 (258)
T ss_dssp CCGGGTTTSCGGGGCCTT---------CCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCSEEEE
T ss_pred CCHHHHCCCChhhccCCC---------CchhHHHHHHHHHHcCCCeEEEEEEEcCCCCEEEEeeEEEEEEcCCCCEEEEE
Confidence 678889998877666544 77888888999999999999999999999999999999999999999999999
Q ss_pred EEeeeeeeccc
Q 042793 82 GIQFFTEANVD 92 (545)
Q Consensus 82 ~~~~Dite~~~ 92 (545)
++.+|||++|+
T Consensus 172 ~~~~DITerk~ 182 (258)
T 3p7n_A 172 GSQVEVDDDQP 182 (258)
T ss_dssp EEEEEC-----
T ss_pred EEeeecchhhh
Confidence 99999999963
No 29
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=98.91 E-value=3.1e-09 Score=86.54 Aligned_cols=82 Identities=11% Similarity=-0.003 Sum_probs=64.1
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHH-cCCeEEEEEEeeecCCcceeEEEEEEEeecC-CCCEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLE-EGIEFQGELLNFRKDGSPLMNRLRLSPIYGD-DETITH 79 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~-~g~~~~ 79 (545)
++++|++|+++.. +.||++.....+.+.+.+. .+..+..+++.++|||+.+|+..+..|+.|+ +|.+.+
T Consensus 37 ~~~~el~g~~~~~---------~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~~~~~~~~~~~~~g~~~~ 107 (121)
T 3f1p_B 37 YQPQELLGKNIVE---------FCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEY 107 (121)
T ss_dssp CCGGGTTTSBGGG---------GBCTTTHHHHHHHHHHHTTSTTCCEEEEEEEECTTSCEEEEEEEEEEECCTTCCCCCE
T ss_pred CChHHHcCCCHHH---------eECHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCCCEEEEEEEEEEEECCCCCceeE
Confidence 5667777776432 2345566666777777774 4557899999999999999999999999987 788889
Q ss_pred EEEEeeeeeeccc
Q 042793 80 VIGIQFFTEANVD 92 (545)
Q Consensus 80 ~i~~~~Dite~~~ 92 (545)
++++.+|||++|+
T Consensus 108 iv~~~~DIT~~kq 120 (121)
T 3f1p_B 108 IICTNTNVKNSSQ 120 (121)
T ss_dssp EEEEEEECCCC--
T ss_pred EEEEeEEcccccC
Confidence 9999999999884
No 30
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=98.91 E-value=5.2e-09 Score=90.19 Aligned_cols=82 Identities=24% Similarity=0.389 Sum_probs=71.8
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
++.++++|+++..+..++ ........+...+..+.++..++...++||..+|+.+++.|+.+++|.+.+++
T Consensus 73 ~~~~e~~g~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~ 143 (166)
T 3ue6_A 73 YSLDQILGRNCRFLQGPE---------TDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYV 143 (166)
T ss_dssp CCHHHHTTSCGGGGCCTT---------SCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEE
T ss_pred cCHHHHcCCCHhheeCCC---------CCHHHHHHHHHHHhcCCceEEEEEEEcCCCCEEEEEEEEEeeeCCCCCEEEEE
Confidence 466788888876555444 67788888899999999999999999999999999999999999999999999
Q ss_pred EEeeeeeeccc
Q 042793 82 GIQFFTEANVD 92 (545)
Q Consensus 82 ~~~~Dite~~~ 92 (545)
++.+|||++|+
T Consensus 144 ~~~~DITe~k~ 154 (166)
T 3ue6_A 144 GVQSKVSEDYA 154 (166)
T ss_dssp EECCBCCHHHH
T ss_pred EEEEechHHHH
Confidence 99999999994
No 31
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=98.90 E-value=2.8e-09 Score=85.93 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=63.0
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeeeecccC
Q 042793 24 RRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEANVDL 93 (545)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite~~~~ 93 (545)
+.||++.....+.+.+.+..+.++..|++.+++||+.+|+.+...|++|++|.+.+++|+.+|||++|+.
T Consensus 43 ~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~ 112 (115)
T 3h9w_A 43 RMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHHH 112 (115)
T ss_dssp SBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC-
T ss_pred hcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEeccCccccc
Confidence 4577777777788888888888899999999999999999999999999999999999999999999965
No 32
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=98.90 E-value=1.5e-09 Score=95.02 Aligned_cols=83 Identities=28% Similarity=0.323 Sum_probs=73.5
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
++.+|++|+++..+..++ ........+...+..+.++..++..+++||+.+|+.+++.|+.+++|.+.+++
T Consensus 45 ~~~~e~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~~ 115 (176)
T 4hia_A 45 YTEGQILGFNCRFLQRGD---------ENAQARADIRDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFL 115 (176)
T ss_dssp CCHHHHTTSCGGGGCCTT---------CCHHHHHHHHHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEESSBTTBCSEEE
T ss_pred cCHHHHcCCCcceeeCCC---------CCHHHHHHHHHHHHcCCceEEEEEEEcCCCCEEEEEEEEEEeeCCCCCeEEEE
Confidence 567888888877666544 77888888999999999999999999999999999999999999999999999
Q ss_pred EEeeeeeecccC
Q 042793 82 GIQFFTEANVDL 93 (545)
Q Consensus 82 ~~~~Dite~~~~ 93 (545)
++.+|||++|+.
T Consensus 116 ~~~~DITe~k~~ 127 (176)
T 4hia_A 116 GSQFELGRSGNS 127 (176)
T ss_dssp EEEEEESSSGGG
T ss_pred EEEEECcHhhHH
Confidence 999999999955
No 33
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=98.89 E-value=1e-08 Score=81.92 Aligned_cols=81 Identities=26% Similarity=0.381 Sum_probs=70.3
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
++.+|++|+++..+..++ ......+.+.+.+..+..+..++...+++|+.+|+.+++.|+.+++|.+.+++
T Consensus 35 ~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~ 105 (115)
T 4eet_B 35 YSREEILGRNARFLQGPE---------TDQATVQKIRDAIRDQRETTVQLINYTKSGKKFWNLLHLQPVRDQKGELQYFI 105 (115)
T ss_dssp CCHHHHTTSCGGGGCCTT---------SCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEE
T ss_pred cCHHHHhCCCHHHhcCCC---------CChHHHHHHHHHHHcCCCcceEEEEecCCCCEEEEEEEEEEEECCCCCEEEEE
Confidence 456778888766555444 67778888899999999999999999999999999999999999999999999
Q ss_pred EEeeeeeecc
Q 042793 82 GIQFFTEANV 91 (545)
Q Consensus 82 ~~~~Dite~~ 91 (545)
++.+|||+++
T Consensus 106 ~~~~DITer~ 115 (115)
T 4eet_B 106 GVQLDGSDHV 115 (115)
T ss_dssp EEEEECSCCC
T ss_pred EEEEeecccC
Confidence 9999999874
No 34
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.78 E-value=2.4e-08 Score=97.16 Aligned_cols=84 Identities=24% Similarity=0.349 Sum_probs=74.4
Q ss_pred CCcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEE
Q 042793 1 MRDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHV 80 (545)
Q Consensus 1 ~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~ 80 (545)
.++++|++|+++..+..++ .+....+.+.+.+..+..+..+++.+++||+.+|+.+++.|++|++|.+.++
T Consensus 48 G~~~~el~G~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~ 118 (332)
T 2wkq_A 48 EYSREEILGRNARFLQGPE---------TDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYF 118 (332)
T ss_dssp CCCHHHHTTSCGGGGCCTT---------CCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEE
T ss_pred CCCHHHHcCCCchhhcCCC---------CCHHHHHHHHHHHHcCCeeEEEEEEEcCCCCEEEEeeEEEEeEcCCCCEEEE
Confidence 3678899999877665444 7788888999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeeecccC
Q 042793 81 IGIQFFTEANVDL 93 (545)
Q Consensus 81 i~~~~Dite~~~~ 93 (545)
+++.+|||++++.
T Consensus 119 v~~~~DITe~k~~ 131 (332)
T 2wkq_A 119 IGVQLDGTEHVRD 131 (332)
T ss_dssp EEEEEEESSCCCH
T ss_pred EEEeccCchhhhh
Confidence 9999999998843
No 35
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.74 E-value=1.7e-06 Score=87.99 Aligned_cols=48 Identities=25% Similarity=0.440 Sum_probs=43.9
Q ss_pred cccchhhHHHHHhhccCChhhhhhHHHhhHHHHHhcCC-hhhHHHHhhhc
Q 042793 135 IFQLSDEVISLKILSWLSPRDIASVGSVCRRFYELTKN-EDLWRMVCQNA 183 (545)
Q Consensus 135 ~~~lp~~~~~~~~~~~l~~~~~~~~~~vcr~~~~l~~s-~~~~~~~~~~~ 183 (545)
|..||+|++ ++|+++|++.++..+..|||+|+.++.+ +.+|+..|...
T Consensus 15 ~~~lp~~~~-~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~ 63 (464)
T 3v7d_B 15 ITSLPFEIS-LKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE 63 (464)
T ss_dssp HHHSCHHHH-HHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHT
T ss_pred hHHCCHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence 567899999 6999999999999999999999999998 89999998654
No 36
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=98.72 E-value=7.8e-09 Score=83.93 Aligned_cols=82 Identities=6% Similarity=-0.036 Sum_probs=61.1
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCC-HHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVD-SSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHV 80 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~ 80 (545)
++++|++|+++..+.+++ .. ....+.+...+..++.+..|+..+++||+.+|+.++..|+ +.+|...++
T Consensus 37 ~~~~el~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~-~~~~~~~~~ 106 (120)
T 3mqq_A 37 CARADLIGRSFEVLYPSS---------DEFERIGERISPVMIAHGSYADDRIMKRAGGELFWCHVTGRAL-DRTAPLAAG 106 (120)
T ss_dssp SCHHHHTTCBGGGGSSSH---------HHHHHHHHHHHHHHHHHSCEEEEEEEECTTSCEEEEEEEEEES-STTSTTSSE
T ss_pred cCHHHhCCCchhhccCCh---------hhHHHHHHHHHHHHhcCCcceEEEEEEeCCCCEEEEEEEEEEC-CCCCCceeE
Confidence 577888898876655322 22 3345566677778888999999999999999999999999 555666678
Q ss_pred EEEeeeeeecccC
Q 042793 81 IGIQFFTEANVDL 93 (545)
Q Consensus 81 i~~~~Dite~~~~ 93 (545)
+++++|||++|+.
T Consensus 107 v~~~~DITerk~~ 119 (120)
T 3mqq_A 107 VWTFEDLSATRRV 119 (120)
T ss_dssp EEEEEESCC----
T ss_pred EEEEEcccHhhcc
Confidence 9999999999953
No 37
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=98.70 E-value=1e-07 Score=79.10 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=68.8
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
++.++++|+++..+..+ .........+...+..+..+..++...+++|..+|+.++..|+.+++|.+.+++
T Consensus 40 ~~~~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~ 110 (146)
T 2v0u_A 40 YSREEILGRNCRFLQGP---------ETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 110 (146)
T ss_dssp CCHHHHTTSCGGGGCCT---------TSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEE
T ss_pred cCHHHHcCCCHHHhcCC---------cCChHHHHHHHHHHhcCCCcceEEEEEecCCcEEEEEEEEEEeECCCCCEEEEE
Confidence 34566777766544433 367777888888999999999999999999999999999999999999999999
Q ss_pred EEeeeeeeccc
Q 042793 82 GIQFFTEANVD 92 (545)
Q Consensus 82 ~~~~Dite~~~ 92 (545)
++.+|||++++
T Consensus 111 ~~~~Dit~~~~ 121 (146)
T 2v0u_A 111 GVQLDGTEHVR 121 (146)
T ss_dssp EEEEEESSCCC
T ss_pred EEEeechHHHH
Confidence 99999999883
No 38
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=98.65 E-value=6.2e-08 Score=82.96 Aligned_cols=83 Identities=33% Similarity=0.402 Sum_probs=70.1
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
++.++++|+++..+..+. ........+...+..+..+..++...+++|..+|+.+++.|+.+++|.+.+++
T Consensus 63 ~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~ 133 (162)
T 3sw1_A 63 YSRDEILYQDCRFLQGDD---------RDQLGRARIRKAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFI 133 (162)
T ss_dssp CCHHHHTTSBGGGGTTTC---------CCCHHHHHHHHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEEECSSSSCEEEE
T ss_pred CCHHHHcCCCcceecCCC---------cCHHHHHHHHHHHhcCCCCcceEEEECCCCCEEEEEEEEEEeecCCCCEEEEE
Confidence 355677788766555433 66677788888899999999999999999999999999999999999999999
Q ss_pred EEeeeeeecccC
Q 042793 82 GIQFFTEANVDL 93 (545)
Q Consensus 82 ~~~~Dite~~~~ 93 (545)
++.+|||++++.
T Consensus 134 ~~~~DiTe~k~~ 145 (162)
T 3sw1_A 134 GIQKDVSRQVEL 145 (162)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEeCcHHHHH
Confidence 999999999953
No 39
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=98.63 E-value=2.6e-07 Score=72.24 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=66.3
Q ss_pred CcccccccCC--CCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEE
Q 042793 2 RDLGAETNDG--IRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITH 79 (545)
Q Consensus 2 ~~~~~~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~ 79 (545)
++.++++|++ ..++..+. ......+.+...+..+..+..++..++++|+.+|+.+++.|+.+++|.+.+
T Consensus 29 ~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 99 (110)
T 1byw_A 29 YSRAEVMQRPCTCDFLHGPC---------TQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIM 99 (110)
T ss_dssp CCHHHHTTSBTTCGGGCCTT---------CCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTCCEEE
T ss_pred CCHHHHccCCCccccccCCc---------CCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEEEEEEEEEEeecCCCCEEE
Confidence 4566778876 34444333 566677888888888888999998899999999999999999999999999
Q ss_pred EEEEeeeeeec
Q 042793 80 VIGIQFFTEAN 90 (545)
Q Consensus 80 ~i~~~~Dite~ 90 (545)
++++.+|||++
T Consensus 100 ~~~~~~DiTe~ 110 (110)
T 1byw_A 100 FILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEEEeccCC
Confidence 99999999975
No 40
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=98.63 E-value=7.5e-08 Score=88.10 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=69.4
Q ss_pred CCcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCc------ceeEEEEEEEeecCC
Q 042793 1 MRDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGS------PLMNRLRLSPIYGDD 74 (545)
Q Consensus 1 ~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~------~~w~~~~~~pi~d~~ 74 (545)
.++.+|++|+++..+..+. .++...+.+++.+..+++|.+|+++++|||+ .+|+++++.|++|++
T Consensus 145 G~~~~e~~g~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~~pi~d~~ 215 (227)
T 3ewk_A 145 GMAEGELLGQSPSILDSPL---------ADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDG 215 (227)
T ss_dssp TCCTHHHHSSCGGGGBCTT---------SCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEEEEEECSS
T ss_pred CCCHHHHcCCChhhccCCC---------CCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEEEEEECCC
Confidence 3678899999887776544 7888999999999999999999999999997 899999999999999
Q ss_pred CCEEEEEEEeee
Q 042793 75 ETITHVIGIQFF 86 (545)
Q Consensus 75 g~~~~~i~~~~D 86 (545)
|.+++|+++.+|
T Consensus 216 g~~~~~v~i~~D 227 (227)
T 3ewk_A 216 NGLVGYVQIQHD 227 (227)
T ss_dssp SCEEEEEEEEEC
T ss_pred CCEEEEEEEecC
Confidence 999999999987
No 41
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=98.62 E-value=5.2e-08 Score=78.87 Aligned_cols=82 Identities=12% Similarity=-0.003 Sum_probs=51.7
Q ss_pred CCcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCe----EEEEEEeeecCCcceeEEEEEEEeecCCCC
Q 042793 1 MRDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIE----FQGELLNFRKDGSPLMNRLRLSPIYGDDET 76 (545)
Q Consensus 1 ~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~ 76 (545)
.++++|++|+++..+.+++ ........+......+.. ...++..++|||+.+|+.++++|+.++.
T Consensus 27 G~~~~el~G~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~~~~~~~~~-- 95 (119)
T 2vv6_A 27 GWSELEAIGQNVNILMPEP---------DRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGTTFPMHLSIGEMQSGG-- 95 (119)
T ss_dssp CCCHHHHTTSBGGGGSCTT---------HHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSCEEEEEEEEEEEEETT--
T ss_pred CCCHHHHcCCCHHHhCCch---------HHHHHHHHHHHHhcCCCcccCCCceEEEEEeCCCCEEEEEEEEEEEEECC--
Confidence 3678899999876655322 222222333333333322 2346777899999999999999998743
Q ss_pred EEEEEEEeeeeeecccC
Q 042793 77 ITHVIGIQFFTEANVDL 93 (545)
Q Consensus 77 ~~~~i~~~~Dite~~~~ 93 (545)
...++++++|||++|++
T Consensus 96 ~~~~~~~~~DITerk~~ 112 (119)
T 2vv6_A 96 EPYFTGFVRDLTEHQQT 112 (119)
T ss_dssp EEEEEEEEEECC-----
T ss_pred eEEEEEEEEEcHHHHHH
Confidence 34689999999999965
No 42
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=98.61 E-value=1.5e-07 Score=76.07 Aligned_cols=67 Identities=19% Similarity=0.096 Sum_probs=58.8
Q ss_pred CCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeeeecc
Q 042793 25 RHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEANV 91 (545)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite~~ 91 (545)
.||+......+.+...+..+.++..+++..++||+.+|+.++..|+.+++|.+.+++++.+|||++|
T Consensus 58 ~~~~d~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k 124 (125)
T 3nja_A 58 VHPDDRARVRRELDRHVLGDRPFDVEYRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHK 124 (125)
T ss_dssp BCTTTHHHHHHHHHHHHHSCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC--
T ss_pred cChhHHHHHHHHHHHHHhcCCCceEEEEEECCCCCEEEEEEeeEEEECCCCCEEEEEEEEEeccccc
Confidence 4666777777788888888888999999999999999999999999999999999999999999987
No 43
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=98.59 E-value=2.1e-07 Score=74.67 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=66.1
Q ss_pred cccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEE
Q 042793 3 DLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIG 82 (545)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~ 82 (545)
+.++++|+++..+..++ ......+.+...+..+..+..+....+++|..+|+.+++.|+.+++|.+.++++
T Consensus 43 ~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~ 113 (124)
T 3lyx_A 43 SKEQAIGQPVNMLHVPG---------DTEHITSEVISAVENQGKWTGEIRMLHKDGHIGWIESMCVPIYGENYQMVGALG 113 (124)
T ss_dssp CHHHHTTSBGGGGSCTT---------THHHHHHHHHHHHHHTSCEEEEEEEECTTSCEEEEEEEEEEEECSTTCEEEEEE
T ss_pred CHHHHcCCCHHHhcCcc---------hhhHHHHHHHHHHHcCCcccceEEEEccCCCEEEEEEEEEEEECCCCCEEEEEE
Confidence 45667777766444433 555566778888888999999999999999999999999999999999999999
Q ss_pred Eeeeeeeccc
Q 042793 83 IQFFTEANVD 92 (545)
Q Consensus 83 ~~~Dite~~~ 92 (545)
+.+|||++|+
T Consensus 114 ~~~Dit~~~~ 123 (124)
T 3lyx_A 114 INRDITKRKK 123 (124)
T ss_dssp EEEECSCC--
T ss_pred EEecchhhhc
Confidence 9999999884
No 44
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=98.57 E-value=3.5e-07 Score=73.94 Aligned_cols=82 Identities=32% Similarity=0.543 Sum_probs=67.7
Q ss_pred cccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEE
Q 042793 3 DLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIG 82 (545)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~ 82 (545)
+.++++|+++..+..+. ........+...+..+..+..++...+++|+.+|+.+.+.|+.+.+|.+.++++
T Consensus 45 ~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~ 115 (130)
T 2z6d_A 45 SSKEIVGRNCRFLQGPD---------TDKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIG 115 (130)
T ss_dssp CHHHHTTSCGGGGCCTT---------SCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEE
T ss_pred CHHHHcCCChhhccCCC---------CCchHHHHHHHHHHcCCcceeEEEEEcCCCcEEEEEEEEEEEECCCCCeeEEEE
Confidence 45667777765444333 667777888888888988999988899999999999999999999999999999
Q ss_pred EeeeeeecccC
Q 042793 83 IQFFTEANVDL 93 (545)
Q Consensus 83 ~~~Dite~~~~ 93 (545)
+.+|||++++.
T Consensus 116 ~~~Dit~~~~~ 126 (130)
T 2z6d_A 116 MQVEVSKYTEG 126 (130)
T ss_dssp EEEECCTTC--
T ss_pred EEecchHHHHh
Confidence 99999999865
No 45
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.51 E-value=3.8e-08 Score=103.96 Aligned_cols=82 Identities=11% Similarity=0.058 Sum_probs=68.4
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
++.+|++|++...+.. | .+.+.++.+.+.+..++.+.+|+++++|||+.+|+.+++.|++|++|.+++++
T Consensus 553 ~s~~e~~g~~~l~~~~---------~-~~~~~~~~i~~~l~~g~~~~~E~~~~~~dG~~~~~~~~~~pv~d~~G~v~g~v 622 (635)
T 4eho_A 553 AGSPSAVHLDDLAGFF---------V-ESNDFLRNVAELIDHGRGWRGEVLLRGAGNRPLPLAVRADPVTRTEDQSLGFV 622 (635)
T ss_dssp SSCCCCCSSGGGTTSS---------S-SCTHHHHHHHHHHHHCCCBCCCCEECCSSSSCEECCCCEEEECSTTSSCCEEE
T ss_pred cChHHHcCcchhhccC---------C-CCHHHHHHHHHHHHcCCcEEEEEEEEccCCcEEEEEEEEEEEECCCCCEEEEE
Confidence 5667777765332222 2 35566778888999999999999999999999999999999999999999999
Q ss_pred EEeeeeeecccC
Q 042793 82 GIQFFTEANVDL 93 (545)
Q Consensus 82 ~~~~Dite~~~~ 93 (545)
++.+|||++|++
T Consensus 623 ~i~~DITerK~a 634 (635)
T 4eho_A 623 LIFSDATDRRTA 634 (635)
T ss_dssp ECCCCCSSSCCC
T ss_pred EEEEeCchHhhC
Confidence 999999999965
No 46
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=98.44 E-value=3.2e-07 Score=80.83 Aligned_cols=100 Identities=14% Similarity=0.011 Sum_probs=56.8
Q ss_pred ccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEe---eecC--CcceeEEEEEEEeecCCCCEEEE
Q 042793 6 AETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLN---FRKD--GSPLMNRLRLSPIYGDDETITHV 80 (545)
Q Consensus 6 ~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~kd--G~~~w~~~~~~pi~d~~g~~~~~ 80 (545)
+++|+++..+.++. ........+...+..+++...+... .+++ |..+|+.+++.|+.+++|.+.++
T Consensus 75 ~~~G~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~pi~~~~g~~~g~ 145 (185)
T 3kx0_X 75 DTVGQPAREVYPEL---------EGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGV 145 (185)
T ss_dssp SCTTSBHHHHCTTS---------CSSSSHHHHHHHHHHCCCEEEEEEEEC--------CCEEEEEEEEEEECTTSCEEEE
T ss_pred cccCCcHHHHCCch---------hhhhHHHHHHHHHHcCCcccccceeEEeeccCCCCccEEEEEEEEEEECCCCCEEEE
Confidence 66777655444332 3334456677777788876655322 2333 78899999999999999999999
Q ss_pred EEEeeeeeecccCCCCCCchhHHHhhhhhhhhccccc
Q 042793 81 IGIQFFTEANVDLGPVPGYPVKEFLKSSERQRSFFSG 117 (545)
Q Consensus 81 i~~~~Dite~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 117 (545)
+++.+|||++|++|.+. ...+.+.++|++.++++
T Consensus 146 ~~~~~DITerk~~e~~~---~~ll~~~~~~l~~~~~~ 179 (185)
T 3kx0_X 146 QLIVDDVTSRVRARQAA---EARVEELSERYRNVRDS 179 (185)
T ss_dssp EEEEEECHHHHTTCC----------------------
T ss_pred EEEEEeCCHHHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 99999999999764332 22244577888877764
No 47
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=98.44 E-value=1.3e-07 Score=80.66 Aligned_cols=79 Identities=13% Similarity=-0.031 Sum_probs=57.0
Q ss_pred ccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEE-e--ee-cC-CcceeEEEEEEEeecCCCCEEEE
Q 042793 6 AETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELL-N--FR-KD-GSPLMNRLRLSPIYGDDETITHV 80 (545)
Q Consensus 6 ~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~--~~-kd-G~~~w~~~~~~pi~d~~g~~~~~ 80 (545)
+++|+++..+.++. ........+.+.+..+++...+.. . .+ .+ |..+|+.+++.|+.+++|.+.++
T Consensus 55 ~~~G~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pi~~~~g~~~g~ 125 (158)
T 3k3c_A 55 DTVGQPAREVYPEL---------EGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGV 125 (158)
T ss_dssp CSTTSBHHHHSGGG---------GGTTHHHHHHHHHHHCCCEEEEEEEEEEESSSSCEEEEEEEEEEEEEECTTSCEEEE
T ss_pred hhcCCcHHHhCCch---------hHHHHHHHHHHHHHhCCcccccceeEEeccCCCCcceEEEEEEEEEeECCCCCEEEE
Confidence 56677655444322 334456677778878887655432 2 22 23 77899999999999999999999
Q ss_pred EEEeeeeeecccC
Q 042793 81 IGIQFFTEANVDL 93 (545)
Q Consensus 81 i~~~~Dite~~~~ 93 (545)
+++.+|||++|++
T Consensus 126 ~~~~~DITe~k~~ 138 (158)
T 3k3c_A 126 QLIVDDVTSRVRA 138 (158)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEEehhHHHHH
Confidence 9999999999954
No 48
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.43 E-value=1.1e-07 Score=64.28 Aligned_cols=46 Identities=35% Similarity=0.668 Sum_probs=39.2
Q ss_pred ccCcccchhhHHHHHhhccCChhhhhhHHHhhHHHHHhcCChhhHHH
Q 042793 132 VCGIFQLSDEVISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWRM 178 (545)
Q Consensus 132 ~~~~~~lp~~~~~~~~~~~l~~~~~~~~~~vcr~~~~l~~s~~~~~~ 178 (545)
...+..||+|++ .+|++++++.++..++.|||+|+.++.++.+|+.
T Consensus 6 ~~~~~~LP~eil-~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~ 51 (53)
T 1fs1_A 6 GVSWDSLPDELL-LGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT 51 (53)
T ss_dssp ---CCSSCHHHH-HHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC--
T ss_pred CCCHHHCCHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHh
Confidence 345788999999 6999999999999999999999999999999875
No 49
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=98.43 E-value=1.5e-06 Score=70.14 Aligned_cols=81 Identities=9% Similarity=-0.010 Sum_probs=59.6
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcC-CeEEEEEEeeecCCcceeEEEEEEEeecCC-CCEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEG-IEFQGELLNFRKDGSPLMNRLRLSPIYGDD-ETITH 79 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~-g~~~~ 79 (545)
++++|++|+++.. +.||+......+.+.+.+..+ .....+++.++|||+.+|+.++..|++|++ +.+.+
T Consensus 38 ~~~~el~g~~~~~---------~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~~~~~~~~~~~d~~~~~~~~ 108 (121)
T 2kdk_A 38 YLPQELLGTSCYE---------YFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAKDGSFVTLKSQWFSFTNPDTKELEY 108 (121)
T ss_dssp CCTTTSBTSBTTT---------TBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEECSSSCEEEEEEEEEEEECCSSSCEEE
T ss_pred CCHHHHcCCcHHH---------eeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEcCCCEEEEEEEEEEEECCCCCeeeE
Confidence 4566666665432 234556555666666666654 445788899999999999999999999986 45667
Q ss_pred EEEEeeeeeecc
Q 042793 80 VIGIQFFTEANV 91 (545)
Q Consensus 80 ~i~~~~Dite~~ 91 (545)
++++.+||++.+
T Consensus 109 ~v~~~~~i~~~~ 120 (121)
T 2kdk_A 109 IVSVNTLVLGHS 120 (121)
T ss_dssp EEEEEECCSSCC
T ss_pred EEEEEEeccccC
Confidence 899999999865
No 50
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.39 E-value=1.2e-06 Score=73.77 Aligned_cols=85 Identities=25% Similarity=0.386 Sum_probs=66.4
Q ss_pred CcccccccCCCCcccCCCC--CCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEE
Q 042793 2 RDLGAETNDGIRFLQCRGP--FAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITH 79 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~ 79 (545)
++.+|++|+++..+..++. .....|+.......+.+...+..+..+..++..+++||+.+|+.+++.|+++++|.+.+
T Consensus 63 ~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~ 142 (149)
T 3d72_A 63 YSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGEYRY 142 (149)
T ss_dssp CCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSSEEE
T ss_pred cCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCceEEEEEEECCCCCEEEEEEEEEEEEcCCCCEEE
Confidence 5678889988766654320 00011122267778888889999999999999999999999999999999999999999
Q ss_pred EEEEeee
Q 042793 80 VIGIQFF 86 (545)
Q Consensus 80 ~i~~~~D 86 (545)
++++.+|
T Consensus 143 ~v~~~~D 149 (149)
T 3d72_A 143 SMGFQCE 149 (149)
T ss_dssp EEEECCC
T ss_pred EEEEEeC
Confidence 9999877
No 51
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=98.39 E-value=1.1e-06 Score=70.31 Aligned_cols=65 Identities=11% Similarity=-0.001 Sum_probs=59.0
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeee
Q 042793 24 RRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTE 88 (545)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dit 88 (545)
+.||++.....+.+...+..+.++..|++..++||+.+|+.....|+.+++|.+.+++|+.+|||
T Consensus 54 ~i~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 54 MIHHDDRHMLSNAYSKLREAKHSLTLVYRIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp GBCGGGHHHHHHHHHHHHHSCCEEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred HcCHHHHHHHHHHHHHHHhcCCCceEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 45777777777888888888899999999999999999999999999999999999999999997
No 52
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=98.35 E-value=2.2e-06 Score=70.07 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=65.7
Q ss_pred CcccccccCC--CCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEE
Q 042793 2 RDLGAETNDG--IRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITH 79 (545)
Q Consensus 2 ~~~~~~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~ 79 (545)
++.++++|++ ..++..++ ......+.+...+..+..+..+....+++|+.+|+.+++.|+.+++|.+.+
T Consensus 57 ~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 127 (138)
T 2l0w_A 57 YSRAEVMQRPCTCDFLHGPR---------TQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIM 127 (138)
T ss_dssp CCHHHHTTSBTTCGGGCCTT---------CCHHHHHHHHHHTTCSSCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEE
T ss_pred CCHHHHcCCCCcccccCCcc---------cchhHHHHHHHHHhhcCCceeEEEEECCCCCEEEEEEEEEEEeCCCCCEEE
Confidence 3556777776 34444433 666667788888888888888988899999999999999999999999999
Q ss_pred EEEEeeeeeec
Q 042793 80 VIGIQFFTEAN 90 (545)
Q Consensus 80 ~i~~~~Dite~ 90 (545)
++++.+|||++
T Consensus 128 ~~~~~~Dit~~ 138 (138)
T 2l0w_A 128 FILNFEVVMEK 138 (138)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEEEeccCC
Confidence 99999999975
No 53
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=98.21 E-value=6.5e-06 Score=65.01 Aligned_cols=76 Identities=18% Similarity=0.060 Sum_probs=53.9
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEE-EeeecCCcceeEEEEEEEeecCCCCEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGEL-LNFRKDGSPLMNRLRLSPIYGDDETITHV 80 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~kdG~~~w~~~~~~pi~d~~g~~~~~ 80 (545)
++.++++|+++..+.+ + ......+.+...+ .++....+. ...+++|+.+|+.+++.|+.+++|.+.++
T Consensus 38 ~~~~~~~g~~~~~~~~-~---------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~g~~~~~ 106 (114)
T 3luq_A 38 LGDGDILGMSHYDIFP-E---------IGEEWKSVHRRGL-AGEVIRVEEDCFVRADGRTQWLRWEVRPWYEGEGRVGGV 106 (114)
T ss_dssp CCSSCCTTCBHHHHCT-T---------CCHHHHHHHHHHH-TTCCEEEEEEEEEC--CCEEEEEEEEEEEECTTSCEEEE
T ss_pred CCHHHHcCCcHHHHCC-c---------cHHHHHHHHHHHh-cCCcceeeeeEEEcCCCcEEEEEEEEEEeECCCCCEEEE
Confidence 4567777777654442 2 4444444444444 455555544 77899999999999999999999999999
Q ss_pred EEEeeeee
Q 042793 81 IGIQFFTE 88 (545)
Q Consensus 81 i~~~~Dit 88 (545)
+++.+|||
T Consensus 107 ~~~~~DIT 114 (114)
T 3luq_A 107 VIFTEDIT 114 (114)
T ss_dssp EEEEEECC
T ss_pred EEEEeeCC
Confidence 99999997
No 54
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=98.15 E-value=5.6e-06 Score=66.49 Aligned_cols=73 Identities=16% Similarity=0.082 Sum_probs=52.6
Q ss_pred CCcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEE
Q 042793 1 MRDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHV 80 (545)
Q Consensus 1 ~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~ 80 (545)
.++.+|++|+++..+..+ ........+...+..++.+..|.+.++|||+.+|+.+++.|+. +|. +
T Consensus 45 Gy~~~el~g~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~v~~~~~~~~--~g~---~ 109 (117)
T 2r78_A 45 GYTRDEFLALDWGVLSRG----------VDSGWAAASLARIVGGEPLREERTVWTRNGDQLTVELSAHLLP--DGK---I 109 (117)
T ss_dssp CCCHHHHTTCBTTTTTTC----------STTSHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEECT--TSC---E
T ss_pred CcCHHHHcCCCHHHhCCc----------cchhHHHHHHHHHHcCCcEEEEEEEEecCCCEEEEEEEEEEec--CCe---E
Confidence 367788899876544322 1222334455667778888899999999999999999999986 455 6
Q ss_pred EEEeeeee
Q 042793 81 IGIQFFTE 88 (545)
Q Consensus 81 i~~~~Dit 88 (545)
+++++|||
T Consensus 110 ~~i~~DIT 117 (117)
T 2r78_A 110 LGIARDVS 117 (117)
T ss_dssp EEEEEC--
T ss_pred EEEEEeCC
Confidence 79999997
No 55
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.15 E-value=1.2e-06 Score=85.86 Aligned_cols=82 Identities=5% Similarity=-0.206 Sum_probs=67.4
Q ss_pred CCcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecC-CCCEEE
Q 042793 1 MRDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGD-DETITH 79 (545)
Q Consensus 1 ~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~-~g~~~~ 79 (545)
+|+++|++|+++.. +.||++.+...+.+.+.+..++....+++.++|||+.+|++.+..|+.|+ .|++.+
T Consensus 275 GY~~eEl~g~~~~~---------~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv~~~~~~v~~~~~g~~~~ 345 (361)
T 4f3l_A 275 GYLPFEVLGTSGYD---------YYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEF 345 (361)
T ss_dssp CCCHHHHTTSBGGG---------GBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEEEEEEEEEECTTTCCEEE
T ss_pred CcCHHHHcCCCHHH---------eECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEEEEEEEEEEcCCCCCeeE
Confidence 36677888876432 34455666667778888888887788899999999999999999999998 799999
Q ss_pred EEEEeeeeeecc
Q 042793 80 VIGIQFFTEANV 91 (545)
Q Consensus 80 ~i~~~~Dite~~ 91 (545)
+||+.+|||+++
T Consensus 346 iv~~~~dITe~~ 357 (361)
T 4f3l_A 346 IVCTHTVVSYAE 357 (361)
T ss_dssp EEEEEEECCHHH
T ss_pred EEEEEEECChhH
Confidence 999999999887
No 56
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=98.14 E-value=2.5e-06 Score=72.10 Aligned_cols=82 Identities=16% Similarity=0.085 Sum_probs=55.2
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEE---------EEe---eecCCcceeEEEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGE---------LLN---FRKDGSPLMNRLRLSP 69 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---------~~~---~~kdG~~~w~~~~~~p 69 (545)
++++|++|+++..+.+. ......+.++.++..|.+.... ++. ..++|+.+|..++++|
T Consensus 57 ~~~~eviG~~~~~~~p~----------~~~~~~~~l~~vl~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~P 126 (152)
T 3mxq_A 57 FDGETMQGKNILELFPE----------SADYLKRKIDTALVIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIP 126 (152)
T ss_dssp SCHHHHTTSBHHHHSGG----------GHHHHHHHHHHHHHHTSCEEEECCSSSCSSCC----------CCEEEEEEEEE
T ss_pred cCHHHHCCCCHHHhcCC----------hHHHHHHHHHHHHhcCCceeeecccccccccccccCCCCCCCcEEEEEEEEEE
Confidence 56788999987766531 1233456677888877653321 111 1357788899999999
Q ss_pred eecCCCCEEEEEEEeeeeeecccC
Q 042793 70 IYGDDETITHVIGIQFFTEANVDL 93 (545)
Q Consensus 70 i~d~~g~~~~~i~~~~Dite~~~~ 93 (545)
++|++|++.+++.+.+|||+++.+
T Consensus 127 l~d~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 127 IHSEDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp EECTTSCEEEEEEEEEEEECC---
T ss_pred EECCCCCEEEEEEEEEECCHHHhc
Confidence 999999999999999999998854
No 57
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.11 E-value=0.0017 Score=63.67 Aligned_cols=230 Identities=13% Similarity=0.137 Sum_probs=125.4
Q ss_pred eeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCC-----CCccceeEEEEcCCEEEEEcCCCCCcccC
Q 042793 235 SACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPP-----PGRWGHTLSCVNGSHLVVFGGCGRQGLLN 309 (545)
Q Consensus 235 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~-----~~r~~~~~~~~~~~~iyv~GG~~~~~~~~ 309 (545)
+.++.++.||+.... ..+++||..+....|+.-...... .... .+...+.+++||+... ..
T Consensus 48 ~p~v~~~~v~~~~~~-------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~v~~~------~g 113 (376)
T 3q7m_A 48 HPALADNVVYAADRA-------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALL-SGGVTVSGGHVYIGSE------KA 113 (376)
T ss_dssp CCEEETTEEEEECTT-------SEEEEEETTTCCEEEEEECCC---CCSCCCCCE-EEEEEEETTEEEEEET------TS
T ss_pred ccEEECCEEEEEcCC-------CeEEEEEccCCceeeeecCccccccccccCccc-ccCceEeCCEEEEEcC------CC
Confidence 567789999987642 279999998887788753211110 1112 2223345668888543 14
Q ss_pred cEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCC
Q 042793 310 DVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRL 389 (545)
Q Consensus 310 ~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~ 389 (545)
.+++||..+....|+.-... . . ..+.+. .++.+|+... -..++.||..+.+..|+.-........+.
T Consensus 114 ~l~a~d~~tG~~~W~~~~~~--~-~--~~~p~~-~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~ 180 (376)
T 3q7m_A 114 QVYALNTSDGTVAWQTKVAG--E-A--LSRPVV-SDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDMPSLSLRG 180 (376)
T ss_dssp EEEEEETTTCCEEEEEECSS--C-C--CSCCEE-ETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred EEEEEECCCCCEEEEEeCCC--c-e--EcCCEE-ECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence 69999999887789754322 1 1 111223 3557777443 13589999877777898754311111111
Q ss_pred CcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCc--ceEEEEecCCEE
Q 042793 390 GHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRL--DHVAVSLPGGRI 467 (545)
Q Consensus 390 ~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~--~~~~~~~~~~~l 467 (545)
..+.+..++ .+|+ |.. ...++.||+.+....|+.-.... .+.....+. .....++.++.+
T Consensus 181 ~~~~~~~~~-~v~~-g~~---------~g~l~~~d~~tG~~~w~~~~~~~-------~~~~~~~~~~~~~~~p~~~~~~v 242 (376)
T 3q7m_A 181 ESAPTTAFG-AAVV-GGD---------NGRVSAVLMEQGQMIWQQRISQA-------TGSTEIDRLSDVDTTPVVVNGVV 242 (376)
T ss_dssp CCCCEEETT-EEEE-CCT---------TTEEEEEETTTCCEEEEEECCC------------------CCCCCCEEETTEE
T ss_pred CCCcEEECC-EEEE-EcC---------CCEEEEEECCCCcEEEEEecccC-------CCCcccccccccCCCcEEECCEE
Confidence 222334444 6665 322 25689999986667887653220 000000110 111222337777
Q ss_pred EEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEc
Q 042793 468 LIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLG 525 (545)
Q Consensus 468 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~G 525 (545)
|+.+. ...++.+|+++.+..|+.-. +. ....+..++.||+..
T Consensus 243 ~~~~~-------~g~l~~~d~~tG~~~w~~~~-----~~----~~~~~~~~~~l~~~~ 284 (376)
T 3q7m_A 243 FALAY-------NGNLTALDLRSGQIMWKREL-----GS----VNDFIVDGNRIYLVD 284 (376)
T ss_dssp EEECT-------TSCEEEEETTTCCEEEEECC-----CC----EEEEEEETTEEEEEE
T ss_pred EEEec-------CcEEEEEECCCCcEEeeccC-----CC----CCCceEECCEEEEEc
Confidence 77642 24699999976666787641 11 122333367777754
No 58
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=98.05 E-value=7.6e-06 Score=66.99 Aligned_cols=77 Identities=14% Similarity=0.100 Sum_probs=52.0
Q ss_pred CCcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCe----EEEEEEeeecCCcceeEEEEEEEeecCCCC
Q 042793 1 MRDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIE----FQGELLNFRKDGSPLMNRLRLSPIYGDDET 76 (545)
Q Consensus 1 ~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~ 76 (545)
.++++|++|+++..|.+++ ........+......+.. ...++..++|||+.+|+.+++.|+.++.
T Consensus 50 Gy~~~eliG~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~~-- 118 (130)
T 1d06_A 50 GYAEEEVIGQNLRILMPEP---------YRHEHDGYLQRYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRSGG-- 118 (130)
T ss_dssp CCCHHHHTTSBGGGGSCTT---------HHHHHHHHHHHHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEETT--
T ss_pred CCCHHHHcCCcHHHHCCch---------hHHHHHHHHHHHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEECC--
Confidence 3678899999877665432 222222333333333322 2346777899999999999999998643
Q ss_pred EEEEEEEeeeee
Q 042793 77 ITHVIGIQFFTE 88 (545)
Q Consensus 77 ~~~~i~~~~Dit 88 (545)
...++++++|||
T Consensus 119 ~~~~~~~~~DIT 130 (130)
T 1d06_A 119 ERFFTGFIRDLT 130 (130)
T ss_dssp EEEEEEEEEECC
T ss_pred eEEEEEEEEECc
Confidence 346899999997
No 59
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.03 E-value=0.0044 Score=60.66 Aligned_cols=200 Identities=13% Similarity=0.167 Sum_probs=115.5
Q ss_pred eeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEE
Q 042793 234 FSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFV 313 (545)
Q Consensus 234 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 313 (545)
.+.+..++.||+.... ..++.+|..+....|+.-.... ...+.+ +.++.+|+... ...++.
T Consensus 97 ~~~~~~~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~~~~~-----~~~~p~-~~~~~v~v~~~------~g~l~~ 157 (376)
T 3q7m_A 97 GGVTVSGGHVYIGSEK-------AQVYALNTSDGTVAWQTKVAGE-----ALSRPV-VSDGLVLIHTS------NGQLQA 157 (376)
T ss_dssp EEEEEETTEEEEEETT-------SEEEEEETTTCCEEEEEECSSC-----CCSCCE-EETTEEEEECT------TSEEEE
T ss_pred cCceEeCCEEEEEcCC-------CEEEEEECCCCCEEEEEeCCCc-----eEcCCE-EECCEEEEEcC------CCeEEE
Confidence 4456678889886532 2799999988867787532111 111222 33557777542 236899
Q ss_pred EecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCC-----
Q 042793 314 LDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSR----- 388 (545)
Q Consensus 314 yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r----- 388 (545)
||+.+....|+.-........+...+.+.. ++.+|+ |.. -..++.+|..+....|+.-.. .|...
T Consensus 158 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~-g~~------~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~ 227 (376)
T 3q7m_A 158 LNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVV-GGD------NGRVSAVLMEQGQMIWQQRIS--QATGSTEIDR 227 (376)
T ss_dssp EETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEE-CCT------TTEEEEEETTTCCEEEEEECC--C---------
T ss_pred EECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEE-EcC------CCEEEEEECCCCcEEEEEecc--cCCCCccccc
Confidence 999988777986443211111111223333 556666 321 135899998777778986532 11111
Q ss_pred ---CCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCC
Q 042793 389 ---LGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGG 465 (545)
Q Consensus 389 ---~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~ 465 (545)
.....+..++ .+|+.+. ...++.+|+.+....|+.-. +. .....+.++
T Consensus 228 ~~~~~~~p~~~~~-~v~~~~~----------~g~l~~~d~~tG~~~w~~~~--------------~~----~~~~~~~~~ 278 (376)
T 3q7m_A 228 LSDVDTTPVVVNG-VVFALAY----------NGNLTALDLRSGQIMWKREL--------------GS----VNDFIVDGN 278 (376)
T ss_dssp --CCCCCCEEETT-EEEEECT----------TSCEEEEETTTCCEEEEECC--------------CC----EEEEEEETT
T ss_pred ccccCCCcEEECC-EEEEEec----------CcEEEEEECCCCcEEeeccC--------------CC----CCCceEECC
Confidence 1122234444 7877642 36789999986566787431 11 123344488
Q ss_pred EEEEEcCcCCCCCCCCceEEEcCCCCCCceEEe
Q 042793 466 RILIFGGSVAGLHSATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 466 ~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~ 498 (545)
.||+... ...+++||+++.+..|+.-
T Consensus 279 ~l~~~~~-------~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 279 RIYLVDQ-------NDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp EEEEEET-------TCCEEEEETTTCCEEEEEC
T ss_pred EEEEEcC-------CCeEEEEECCCCcEEEeec
Confidence 8888743 2469999998766778764
No 60
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.03 E-value=3.4e-06 Score=83.44 Aligned_cols=82 Identities=15% Similarity=-0.034 Sum_probs=60.7
Q ss_pred CCcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCe-EEEEEEeeecCCcceeEEEEEEEeecC-CCCEE
Q 042793 1 MRDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIE-FQGELLNFRKDGSPLMNRLRLSPIYGD-DETIT 78 (545)
Q Consensus 1 ~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~kdG~~~w~~~~~~pi~d~-~g~~~ 78 (545)
+|+++|++|+++.. +.||++.+...+.+.+.+..++. ...+++.++|||+.+|++.+..+++|. .|.+.
T Consensus 302 GY~~eEl~g~~~~~---------~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vWv~~~~~~~~~~~~g~~~ 372 (387)
T 4f3l_B 302 AYLPQELLGTSCYE---------YFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVE 372 (387)
T ss_dssp CCCHHHHTTSBGGG---------TBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred CCCHHHHcCCcHHH---------eeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEEEEEEEEEEECCCCCCEE
Confidence 36677888776432 33555555566666666655544 456899999999999999999999997 78899
Q ss_pred EEEEEeeeeeecc
Q 042793 79 HVIGIQFFTEANV 91 (545)
Q Consensus 79 ~~i~~~~Dite~~ 91 (545)
++||+.+|||+||
T Consensus 373 ~ivg~~~dIT~Rk 385 (387)
T 4f3l_B 373 YIVSTNTVVLANV 385 (387)
T ss_dssp EEEEEEEECC---
T ss_pred EEEEEEEEcchhh
Confidence 9999999999988
No 61
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=97.96 E-value=1.1e-05 Score=65.03 Aligned_cols=81 Identities=10% Similarity=-0.071 Sum_probs=51.0
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
++.++++|+++..+..++ ......+.+...+..+.. ..++...+++|+.+|+.++..|+.++ ...+++
T Consensus 34 ~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~ 101 (126)
T 3mjq_A 34 YTHEELMSMHILTITSAG---------KMAEGEKILAELFAGKKE-SLPLSLEKKEGTSIPAKARIWQGKWH--NEPCLF 101 (126)
T ss_dssp CCHHHHHHSBHHHHHCTT---------CHHHHHHHHHHHHHTCCS-EEEEEEECTTSCEEEEEEEEEEEESS--SSEEEE
T ss_pred CCHHHHcCCCHHHHcCch---------hHHHHHHHHHHHHhCCCc-eeEEEEEccCCCEEEEEEEEEeeeEC--CceEEE
Confidence 345667777654444322 334444555555554444 77888889999999999999887653 346789
Q ss_pred EEeeeeeecccCC
Q 042793 82 GIQFFTEANVDLG 94 (545)
Q Consensus 82 ~~~~Dite~~~~~ 94 (545)
++.+|||++++++
T Consensus 102 ~~~~DITe~k~a~ 114 (126)
T 3mjq_A 102 AIIKDLSKEERAS 114 (126)
T ss_dssp EEEEECC------
T ss_pred EEEEechHHHHhh
Confidence 9999999999663
No 62
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.93 E-value=4.3e-06 Score=77.79 Aligned_cols=50 Identities=26% Similarity=0.559 Sum_probs=46.4
Q ss_pred cCcccchhhHHHHHhhccCChhhhh-hHHHhhHHHHHhcCChhhHHHHhhhc
Q 042793 133 CGIFQLSDEVISLKILSWLSPRDIA-SVGSVCRRFYELTKNEDLWRMVCQNA 183 (545)
Q Consensus 133 ~~~~~lp~~~~~~~~~~~l~~~~~~-~~~~vcr~~~~l~~s~~~~~~~~~~~ 183 (545)
..+..||+|++ ..||++||+.++. .+++|||+|+.|+.++.||+..|+..
T Consensus 49 ~~~~~LP~ell-~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 49 EYLAELPEPLL-LRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp CCTTSSCHHHH-HHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred cChhhCCHHHH-HHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 35778999999 6999999999999 99999999999999999999998875
No 63
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=97.90 E-value=2.2e-05 Score=62.66 Aligned_cols=59 Identities=14% Similarity=0.034 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeee
Q 042793 29 VDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTE 88 (545)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dit 88 (545)
......+.+ ..+..+..+..+++..+++|+.+|+.++..|+.+++|.+.+++++.+|||
T Consensus 67 ~~~~~~~~~-~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 67 DRELMKDTM-QSLMDGESADVECRVNATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp HHHHHHHHH-HHHHTTCCEEEEEEECGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred HHHHHHHHH-HHHHcCCCccEEEEEEcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 333333344 34677888899999999999999999999999999999999999999997
No 64
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=97.81 E-value=2.5e-05 Score=66.44 Aligned_cols=81 Identities=20% Similarity=0.212 Sum_probs=46.3
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCe----EEEEEEeeecCCcceeEEEEEEEeecCCCCE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIE----FQGELLNFRKDGSPLMNRLRLSPIYGDDETI 77 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~ 77 (545)
++.++++|+++..+..+. ........+......+.. +..++...+++|..+|+.+++.|+ +++|.+
T Consensus 75 ~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~~ 144 (167)
T 1v9y_A 75 YKREEVIGNNIDMLIPRD---------LRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV 144 (167)
T ss_dssp CCGGGTTTSBGGGGSCGG---------GTTTHHHHHHHHHC----------CEEEEECTTSCEEEEEEEEEEE-EETTEE
T ss_pred CCHHHHcCCChhhccCcc---------ccchHHHHHHHHhhcCCCcccccceEEEEEcCCCcEEEEEEEEEEE-ecCCCE
Confidence 456677777765444322 333333444444433322 455777889999999999999999 456666
Q ss_pred EEEEEEeeeeeecccC
Q 042793 78 THVIGIQFFTEANVDL 93 (545)
Q Consensus 78 ~~~i~~~~Dite~~~~ 93 (545)
. ++++.+|||++++.
T Consensus 145 ~-~~~~~~DiT~~~~~ 159 (167)
T 1v9y_A 145 Y-YLALVRDASVEMAQ 159 (167)
T ss_dssp E-EEEEEEC-------
T ss_pred E-EEEEEecCcHHHHH
Confidence 4 89999999999855
No 65
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=97.68 E-value=2.4e-05 Score=71.57 Aligned_cols=73 Identities=14% Similarity=0.053 Sum_probs=52.1
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
+++++++|+++..+.. .+.....+.+.+. ..+..++. .+|. |+.++++||.|++|++.+++
T Consensus 69 ~~~~eliG~~~~~~~~------------~~~~~~~~~~~~~--~~~~~~~~---~~g~--~~~~~~~Pi~d~~G~~~g~v 129 (233)
T 3vol_A 69 FDAGRLMGANIDVFHK------------NPAHQRHLLANLT--GVHKAELN---LGGR--RFSLDVVPVFNDANERLGSA 129 (233)
T ss_dssp CCTTSCTTCBGGGGSS------------SHHHHHHHHHTCC--SCEEEEEE---ETTE--EEEEEEEEEECTTCCEEEEE
T ss_pred CCHHHHcCCCHHHHcC------------CHHHHHHHHHhcc--cceeEEEE---ECCE--EEEEEEEEEECCCCCEEEEE
Confidence 5788999998776653 2333334444332 24555543 4564 77899999999999999999
Q ss_pred EEeeeeeecccC
Q 042793 82 GIQFFTEANVDL 93 (545)
Q Consensus 82 ~~~~Dite~~~~ 93 (545)
++.+|||++++.
T Consensus 130 ~~~~DITe~~~~ 141 (233)
T 3vol_A 130 VQWTDRTEEHRA 141 (233)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEehhhHHHHH
Confidence 999999998843
No 66
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=97.62 E-value=0.012 Score=54.97 Aligned_cols=224 Identities=8% Similarity=0.001 Sum_probs=119.0
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
.+++++.|..+ +.++++|..+.+..|+.-. ......|.+....++++++.+ .+.++.||+ +.
T Consensus 4 ~~~~lv~~~~~------~~v~~~d~~tG~~~w~~~~----~~~~~~~~~~~~pdG~ilvs~-------~~~V~~~d~-~G 65 (276)
T 3no2_A 4 PQHLLVGGSGW------NKIAIINKDTKEIVWEYPL----EKGWECNSVAATKAGEILFSY-------SKGAKMITR-DG 65 (276)
T ss_dssp CCEEEEECTTC------SEEEEEETTTTEEEEEEEC----CTTCCCCEEEECTTSCEEEEC-------BSEEEEECT-TS
T ss_pred CCcEEEeeCCC------CEEEEEECCCCeEEEEeCC----CccCCCcCeEECCCCCEEEeC-------CCCEEEECC-CC
Confidence 35677776543 3789999988866787532 111122444444455677732 245999999 66
Q ss_pred CCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCC-CCCcEEEEECC
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPS-RLGHTLSVYGG 398 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~-r~~~~~~~~~~ 398 (545)
...|+.-.. .....+++....++++++...-. ...++.+|. ..+..|+.-.....+.+ ...+.+....+
T Consensus 66 ~~~W~~~~~----~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~ 135 (276)
T 3no2_A 66 RELWNIAAP----AGCEMQTARILPDGNALVAWCGH-----PSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKK 135 (276)
T ss_dssp CEEEEEECC----TTCEEEEEEECTTSCEEEEEEST-----TEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTT
T ss_pred CEEEEEcCC----CCccccccEECCCCCEEEEecCC-----CCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCC
Confidence 567874332 11122333444444565543210 134677774 23344553321111110 01112223333
Q ss_pred cEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCC
Q 042793 399 RKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLH 478 (545)
Q Consensus 399 ~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 478 (545)
+.+++.... ...+..||++ ....|+.-... . .+.+....++.++|.+..+
T Consensus 136 G~~lv~~~~---------~~~v~~~d~~-G~~~w~~~~~~-------------~---~~~~~~~~~g~~~v~~~~~---- 185 (276)
T 3no2_A 136 GNYLVPLFA---------TSEVREIAPN-GQLLNSVKLSG-------------T---PFSSAFLDNGDCLVACGDA---- 185 (276)
T ss_dssp SCEEEEETT---------TTEEEEECTT-SCEEEEEECSS-------------C---CCEEEECTTSCEEEECBTT----
T ss_pred CCEEEEecC---------CCEEEEECCC-CCEEEEEECCC-------------C---ccceeEcCCCCEEEEeCCC----
Confidence 355554332 3679999998 46678754311 1 1234445578888876632
Q ss_pred CCCceEEEcCCCCCCceEEeccCCCCCCCCC--CceeEEeCCeeEEEEc
Q 042793 479 SATQLYLLDPTEEKPTWRILNVPGRPPRFAW--GHSTCVVGGTRTIVLG 525 (545)
Q Consensus 479 ~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~--~~~~~~~~~~~l~i~G 525 (545)
..++.||+++.+..|+.-... .+..+. -.++.+..++.+||..
T Consensus 186 --~~v~~~d~~tG~~~w~~~~~~--~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 186 --HCFVQLNLESNRIVRRVNAND--IEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp --SEEEEECTTTCCEEEEEEGGG--SBSCCCSEEEEEEECTTSCEEEEE
T ss_pred --CeEEEEeCcCCcEEEEecCCC--CCCccccccccceEcCCCCEEEEe
Confidence 469999998667788876321 111111 2344445578888876
No 67
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.59 E-value=3e-05 Score=71.18 Aligned_cols=49 Identities=33% Similarity=0.521 Sum_probs=45.3
Q ss_pred CcccchhhHHHHHhhccCChhhhhhHHHhhHHHHHhcCChhhHHHHhhhc
Q 042793 134 GIFQLSDEVISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWRMVCQNA 183 (545)
Q Consensus 134 ~~~~lp~~~~~~~~~~~l~~~~~~~~~~vcr~~~~l~~s~~~~~~~~~~~ 183 (545)
.|..||+|++ ++|+++|++.|+..++.|||+||.++..+.+|+..++..
T Consensus 4 ~l~~LP~ei~-l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 4 TLTRLPIDVQ-LYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHHHSCHHHH-HHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred hhHhCCHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence 3678999999 799999999999999999999999999999999998753
No 68
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.54 E-value=0.061 Score=51.38 Aligned_cols=249 Identities=9% Similarity=-0.013 Sum_probs=127.1
Q ss_pred CCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCce-EEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccC
Q 042793 231 RCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEW-QHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLN 309 (545)
Q Consensus 231 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W-~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~ 309 (545)
.....++..++++|+.... .+.+.++|+.+. +- ..++ ....| +.++...++++|+.... .+
T Consensus 44 ~~~~~i~~~~~~lyv~~~~------~~~v~viD~~t~--~~~~~i~--~~~~p---~~i~~~~~g~lyv~~~~-----~~ 105 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNN------SHVIFAIDINTF--KEVGRIT--GFTSP---RYIHFLSDEKAYVTQIW-----DY 105 (328)
T ss_dssp SCEEEEEEETTEEEEEEGG------GTEEEEEETTTC--CEEEEEE--CCSSE---EEEEEEETTEEEEEEBS-----CS
T ss_pred ccceEEEEECCEEEEEEcC------CCEEEEEECccc--EEEEEcC--CCCCC---cEEEEeCCCeEEEEECC-----CC
Confidence 3345667789999998753 247999999877 44 3333 22233 33343234589998642 25
Q ss_pred cEEEEecCCCCCceE-eccCCCCCC-CCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceE-EecCCCCCC
Q 042793 310 DVFVLDLDAKPPTWR-EISGLAPPL-PRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWR-EIPVTWTPP 386 (545)
Q Consensus 310 ~~~~yd~~t~~~~W~-~~~~~~~~~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~-~~~~~~~p~ 386 (545)
.+.++|+.+. +-. .++...... ....+..+. .++++|+..-- ..+.+.++|+.+. +.. .+.....|
T Consensus 106 ~v~~iD~~t~--~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~-----~~~~v~viD~~t~--~~~~~i~~g~~p- 174 (328)
T 3dsm_A 106 RIFIINPKTY--EITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWS-----YQNRILKIDTETD--KVVDELTIGIQP- 174 (328)
T ss_dssp EEEEEETTTT--EEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECT-----TCCEEEEEETTTT--EEEEEEECSSCB-
T ss_pred eEEEEECCCC--eEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCC-----CCCEEEEEECCCC--eEEEEEEcCCCc-
Confidence 7999999988 433 222211000 001122333 57799997420 1246899996543 432 23322122
Q ss_pred CCCCcEEEEECCcEEEEEcccCCCCC-CccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEec--
Q 042793 387 SRLGHTLSVYGGRKILMFGGLAKSGP-LRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLP-- 463 (545)
Q Consensus 387 ~r~~~~~~~~~~~~lyi~GG~~~~~~-~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~-- 463 (545)
+.++...++++|+......... .....+.++++|+. +.+....-.. |... ....+++.
T Consensus 175 ----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~--t~~v~~~~~~------------~~g~-~p~~la~~~d 235 (328)
T 3dsm_A 175 ----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE--TFTVEKQFKF------------KLGD-WPSEVQLNGT 235 (328)
T ss_dssp ----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT--TTEEEEEEEC------------CTTC-CCEEEEECTT
T ss_pred ----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECC--CCeEEEEEec------------CCCC-CceeEEEecC
Confidence 2333444458887754321110 00013689999998 5555432222 1111 11233332
Q ss_pred CCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCC-CCCCceeEEe-CCeeEEEEcCCCCcccccccceeee
Q 042793 464 GGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPR-FAWGHSTCVV-GGTRTIVLGGQTGEEWMLSELHELS 541 (545)
Q Consensus 464 ~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~-~r~~~~~~~~-~~~~l~i~GG~~~~~~~~~~~~~l~ 541 (545)
++.+|+..+ .++.+|+++. +.... ...+. ...-...++. .+++||+....+-. ..+.|++|+
T Consensus 236 ~~~lyv~~~---------~v~~~d~~t~--~~~~~---~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~--~~~~V~v~d 299 (328)
T 3dsm_A 236 RDTLYWINN---------DIWRMPVEAD--RVPVR---PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQ--QQGIVYRYS 299 (328)
T ss_dssp SCEEEEESS---------SEEEEETTCS--SCCSS---CSBCCCSSCEEEEEECTTTCCEEEEECTTSS--SEEEEEEEC
T ss_pred CCEEEEEcc---------EEEEEECCCC--ceeee---eeecCCCCceEEEEEcCCCCeEEEEcccccc--cCCEEEEEC
Confidence 466787633 6999999743 22111 11111 1122233333 26889997621111 125577776
Q ss_pred ec
Q 042793 542 LV 543 (545)
Q Consensus 542 l~ 543 (545)
++
T Consensus 300 ~~ 301 (328)
T 3dsm_A 300 PQ 301 (328)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 69
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=97.49 E-value=0.00011 Score=58.11 Aligned_cols=71 Identities=3% Similarity=-0.105 Sum_probs=50.5
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
++.+|++|+++..+.+.. .... .+.+..+..+..+....++||+.+|+.+++.|+.++++ ..++
T Consensus 48 ~~~~el~g~~~~~~~~~~----------~~~~----~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~ 111 (118)
T 3olo_A 48 YSREQLLSMNLQDIDVDF----------ALHD----WEEIRQKNNYTFKTRYRSQSGRIFLVEMSLTFLEDQER--RFSC 111 (118)
T ss_dssp CCHHHHTTCBGGGTBTTG----------GGSC----HHHHHHHSEEEEEEEEECTTCCEEEEEEEEEEEEETTE--EEEE
T ss_pred CCHHHHhCCChhhccccc----------CHHH----HHHHHhcCcEEEEEEEEccCCCEEEEEEEEEEEEECCc--cEEE
Confidence 567888888766555322 1111 23344566788899999999999999999999987543 4678
Q ss_pred EEeeeee
Q 042793 82 GIQFFTE 88 (545)
Q Consensus 82 ~~~~Dit 88 (545)
++.+|||
T Consensus 112 ~~~~DIT 118 (118)
T 3olo_A 112 VFVREKS 118 (118)
T ss_dssp EEEEEC-
T ss_pred EEEEeCC
Confidence 9999997
No 70
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=97.40 E-value=0.00065 Score=54.46 Aligned_cols=70 Identities=14% Similarity=0.075 Sum_probs=45.9
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
+++++++|+++..+.. .+.....+.+.+. ..+..++. .+|. ++.++++||.|++|++.+++
T Consensus 52 ~~~~~~~G~~~~~~~~------------~~~~~~~~~~~~~--~~~~~~~~---~~~~--~~~~~~~pi~~~~g~~~g~v 112 (121)
T 4hi4_A 52 FDAGRLMGANIDVFHK------------NPAHQRHLLANLT--GVHKAELN---LGGR--RFSLDVVPVFNDANARLGSA 112 (121)
T ss_dssp CCGGGCTTCBGGGGCS------------SHHHHHHHHHHCS--SCEEEEEE---ETTE--EEEEEEEEEECTTSCEEEEE
T ss_pred CChHHhcCCCHHHhcC------------CHHHHHHHHhCcC--CCcEEEEE---ECCE--EEEEEEEEEECCCCCEEEEE
Confidence 4678889988765552 2222333333332 34454443 3554 55789999999999999999
Q ss_pred EEeeeeeec
Q 042793 82 GIQFFTEAN 90 (545)
Q Consensus 82 ~~~~Dite~ 90 (545)
++.+||||+
T Consensus 113 ~~~~DiTee 121 (121)
T 4hi4_A 113 VQWTDRTEE 121 (121)
T ss_dssp EEEEECC--
T ss_pred EEEEEecCC
Confidence 999999974
No 71
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=97.33 E-value=0.00051 Score=57.74 Aligned_cols=79 Identities=6% Similarity=-0.013 Sum_probs=55.7
Q ss_pred ccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEE
Q 042793 4 LGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGI 83 (545)
Q Consensus 4 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~ 83 (545)
.++++|+++..++++ ...+.+..+.+.+..++....+++... .+....+.++..||+|++|++.+.+.+
T Consensus 58 ~~~~iGr~v~~~~~~----------~~~~~v~~i~~~l~~g~~~~~~~~~~~-~~~~~~v~v~~~Pi~d~~G~~~G~vev 126 (151)
T 2qkp_A 58 TPSQVGRNVELCHPP----------KVLDKVKKVFELLRNGQRDKVNMWFQS-ERLGKFVYVTYAAVRDQAGDFQGVLEY 126 (151)
T ss_dssp CGGGTTSBGGGSSCH----------HHHHHHHHHHHHHHTTSBSEEEEEEEE-TTTTEEEEEEEEEEECTTCCEEEEEEE
T ss_pred CHHHcCCCHHHhCCH----------HHHHHHHHHHHHHHcCCccEEEEEEec-CCCCeEEEEEEEEEECCCCCEEEEEEE
Confidence 356788877655431 233445667777887877666665433 322346788999999999999999999
Q ss_pred eeeeeecccC
Q 042793 84 QFFTEANVDL 93 (545)
Q Consensus 84 ~~Dite~~~~ 93 (545)
++|||+.+++
T Consensus 127 ~~Dit~l~~l 136 (151)
T 2qkp_A 127 VQDIKPFFEL 136 (151)
T ss_dssp EEECGGGGGG
T ss_pred EEECHHHHhh
Confidence 9999987744
No 72
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=97.33 E-value=0.00021 Score=58.43 Aligned_cols=77 Identities=12% Similarity=-0.009 Sum_probs=46.6
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcC-------CeEEEEEEeeecCCcceeEEEEEEEeecCC
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEG-------IEFQGELLNFRKDGSPLMNRLRLSPIYGDD 74 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~ 74 (545)
++++|++|+++..+..++ ......+.+......+ ..+..|+..++|||+.+|++++++|+.+++
T Consensus 42 ~~~~el~G~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~rkdG~~~~velsis~i~~~~ 112 (129)
T 3mfx_A 42 CPQVSLKGQDWRNFLTEH---------HQARYDNLLSHDVQLGTNCGQPVQHPAQETTLICASGKAKDVELSISYIPGHE 112 (129)
T ss_dssp SCHHHHTTSBGGGGBCTT---------CCGGGGCTTC----------CCSCEEEEEEEEECTTSCEEEEEEEEEEECSSS
T ss_pred cCHHHHcCCcHHHHcChH---------hHHHHHHHHHHHHhcCcccccccCCCceEEEEEcCCCCEEEEEEEEEEecCCC
Confidence 577889999876555433 2221111111111111 234678899999999999999999998433
Q ss_pred CCEEEEEEEeeeeeec
Q 042793 75 ETITHVIGIQFFTEAN 90 (545)
Q Consensus 75 g~~~~~i~~~~Dite~ 90 (545)
. .|+++++|....
T Consensus 113 -~--~~v~~~~~~~~~ 125 (129)
T 3mfx_A 113 -P--MFVMVMHDLEHH 125 (129)
T ss_dssp -C--EEEEEEEEC---
T ss_pred -c--EEEEEEechhhh
Confidence 2 378999998643
No 73
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.33 E-value=0.084 Score=47.60 Aligned_cols=200 Identities=17% Similarity=0.099 Sum_probs=108.2
Q ss_pred eeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEE
Q 042793 286 HTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTF 365 (545)
Q Consensus 286 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 365 (545)
+.+. +.++.+|+-.|..+. +.+.++|+.+. +=..--.+ +..-.+... ...++++|+.... .+.++
T Consensus 24 qGL~-~~~~~LyestG~~g~---S~v~~vD~~tg--kv~~~~~l--~~~~fgeGi-~~~~~~ly~ltw~------~~~v~ 88 (243)
T 3mbr_X 24 EGLF-YLRGHLYESTGETGR---SSVRKVDLETG--RILQRAEV--PPPYFGAGI-VAWRDRLIQLTWR------NHEGF 88 (243)
T ss_dssp EEEE-EETTEEEEEECCTTS---CEEEEEETTTC--CEEEEEEC--CTTCCEEEE-EEETTEEEEEESS------SSEEE
T ss_pred ccEE-EECCEEEEECCCCCC---ceEEEEECCCC--CEEEEEeC--CCCcceeEE-EEeCCEEEEEEee------CCEEE
Confidence 3444 446799999886543 47899999998 43322222 322233333 4447799998643 25699
Q ss_pred EEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCce-EEeecCCCCCCC
Q 042793 366 LLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCW-RCVTGSGMPGAG 444 (545)
Q Consensus 366 ~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W-~~v~~~~~~~~~ 444 (545)
+||.. +-+.+.. .+.+..+.+++. ++++||+.-| ++.++.+|++ +.+- ..+...
T Consensus 89 v~D~~----tl~~~~t--i~~~~~Gwglt~-dg~~L~vSdg----------s~~l~~iDp~--t~~~~~~I~V~------ 143 (243)
T 3mbr_X 89 VYDLA----TLTPRAR--FRYPGEGWALTS-DDSHLYMSDG----------TAVIRKLDPD--TLQQVGSIKVT------ 143 (243)
T ss_dssp EEETT----TTEEEEE--EECSSCCCEEEE-CSSCEEEECS----------SSEEEEECTT--TCCEEEEEECE------
T ss_pred EEECC----cCcEEEE--EeCCCCceEEee-CCCEEEEECC----------CCeEEEEeCC--CCeEEEEEEEc------
Confidence 99954 2333322 222335566654 4458999866 3789999998 5443 233211
Q ss_pred CCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCC-CceEEeccC-CCC-----CCCCCCceeEEe-
Q 042793 445 NPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEK-PTWRILNVP-GRP-----PRFAWGHSTCVV- 516 (545)
Q Consensus 445 ~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~-~~W~~~~~~-~~~-----p~~r~~~~~~~~- 516 (545)
..+.+...-......+++||+--- ..++|.+.|+++.+ ..|..+... +.. +.. .....+++
T Consensus 144 ----~~g~~~~~lNeLe~~~G~lyanvw------~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~-~vlNGIA~d 212 (243)
T 3mbr_X 144 ----AGGRPLDNLNELEWVNGELLANVW------LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTN-DVLNGIAFD 212 (243)
T ss_dssp ----ETTEECCCEEEEEEETTEEEEEET------TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTS-SCEEEEEEE
T ss_pred ----cCCcccccceeeEEeCCEEEEEEC------CCCeEEEEECCCCCEEEEEECCcCccccccccCCcC-CceEEEEEc
Confidence 112222211222233888886421 35789999997432 123333211 111 111 11122333
Q ss_pred -CCeeEEEEcCCCCcccccccceeeee
Q 042793 517 -GGTRTIVLGGQTGEEWMLSELHELSL 542 (545)
Q Consensus 517 -~~~~l~i~GG~~~~~~~~~~~~~l~l 542 (545)
.++++||-|-+- ..+|...+
T Consensus 213 ~~~~~lfVTGK~w------p~~~~v~~ 233 (243)
T 3mbr_X 213 AEHDRLFVTGKRW------PMLYEIRL 233 (243)
T ss_dssp TTTTEEEEEETTC------SEEEEEEE
T ss_pred CCCCEEEEECCCC------CcEEEEEE
Confidence 258899988765 34565554
No 74
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=97.33 E-value=0.0004 Score=66.73 Aligned_cols=82 Identities=9% Similarity=-0.045 Sum_probs=62.2
Q ss_pred CCcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCe-----EEEEEEeeecCCcceeEEEEEEEeecCC-
Q 042793 1 MRDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIE-----FQGELLNFRKDGSPLMNRLRLSPIYGDD- 74 (545)
Q Consensus 1 ~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~kdG~~~w~~~~~~pi~d~~- 74 (545)
+|+++|++|+++.. +.||++.+...+.+.+.+..|+. ...+++.++|||+.+|++.+..+++|..
T Consensus 178 GY~peELiG~s~~~---------~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kdG~~vWlet~~~~~~np~s 248 (339)
T 3rty_A 178 GYLPQDLIGRSIMD---------FYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWS 248 (339)
T ss_dssp CCCHHHHTTSBGGG---------GBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTTSCEEEEEEEEEEEECTTT
T ss_pred CCCHHHHcCCcHHH---------EECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccCCCEEEEEEEEEEEECCCC
Confidence 36778888886442 33455666666777777777664 3567899999999999999999999876
Q ss_pred CCEEEEEEEeeeeeecc
Q 042793 75 ETITHVIGIQFFTEANV 91 (545)
Q Consensus 75 g~~~~~i~~~~Dite~~ 91 (545)
+.+..+||+.+.|+...
T Consensus 249 ~~~~~II~~h~vi~~p~ 265 (339)
T 3rty_A 249 RKLEFVVGHHRVFQGPK 265 (339)
T ss_dssp CSEEEEEEEEEEEECCS
T ss_pred CCeeEEEEEEEECCCCC
Confidence 56668889999998654
No 75
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=97.22 E-value=0.0012 Score=62.70 Aligned_cols=80 Identities=11% Similarity=0.005 Sum_probs=58.8
Q ss_pred CCcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCe---EEEEEEeeecCCcceeEEEEEEEeecCC-CC
Q 042793 1 MRDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIE---FQGELLNFRKDGSPLMNRLRLSPIYGDD-ET 76 (545)
Q Consensus 1 ~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~kdG~~~w~~~~~~pi~d~~-g~ 76 (545)
.|.++|++|+++.. +.||++.....+.+.+.+..++. ...+++.++|||+.+|++....+++|.. ++
T Consensus 198 GY~peELig~s~~~---------~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~vwvet~~~~~~np~s~~ 268 (317)
T 4dj3_A 198 GYLPQDLIGTSILT---------YLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVILDSSWSSFVNPWSRK 268 (317)
T ss_dssp SCCHHHHTTSBGGG---------GBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEEEEEEEEEEEECSSSCC
T ss_pred CcChHHHcCCCHHH---------eECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCEEEEEEEEEEEECCCCCc
Confidence 36778888886432 34566777777777777876654 3577899999999999999999999864 55
Q ss_pred EEEEEEEeeeeee
Q 042793 77 ITHVIGIQFFTEA 89 (545)
Q Consensus 77 ~~~~i~~~~Dite 89 (545)
+..+|+..+-++.
T Consensus 269 ~e~II~~h~v~~~ 281 (317)
T 4dj3_A 269 VSFIIGRHKVRTS 281 (317)
T ss_dssp EEEEEEEEEECCC
T ss_pred ccEEEEEEEeccC
Confidence 6566777775553
No 76
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.17 E-value=0.1 Score=48.02 Aligned_cols=204 Identities=13% Similarity=0.042 Sum_probs=105.0
Q ss_pred eeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEE
Q 042793 286 HTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTF 365 (545)
Q Consensus 286 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 365 (545)
+.++...++.+|+..|..+ .+.+.++|+.|. +=..--+. + ++.....+...++++|+..-. .+.++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg--~v~~~i~l--~-~~~fgeGi~~~g~~lyv~t~~------~~~v~ 89 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTG--KVENIHKM--D-DSYFGEGLTLLNEKLYQVVWL------KNIGF 89 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTC--CEEEEEEC--C-TTCCEEEEEEETTEEEEEETT------CSEEE
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCC--CEEEEEec--C-CCcceEEEEEeCCEEEEEEec------CCEEE
Confidence 5555444368999877432 257999999998 43321111 2 222222344457799998542 25699
Q ss_pred EEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCce-EEeecCCCCCCC
Q 042793 366 LLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCW-RCVTGSGMPGAG 444 (545)
Q Consensus 366 ~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W-~~v~~~~~~~~~ 444 (545)
+||..+.+ .-..++.+ .| .+..+ ..+++++|+..| ++.++.+|+. +.+- ..+...
T Consensus 90 viD~~t~~-v~~~i~~g-~~---~g~gl-t~Dg~~l~vs~g----------s~~l~viD~~--t~~v~~~I~Vg------ 145 (266)
T 2iwa_A 90 IYDRRTLS-NIKNFTHQ-MK---DGWGL-ATDGKILYGSDG----------TSILYEIDPH--TFKLIKKHNVK------ 145 (266)
T ss_dssp EEETTTTE-EEEEEECC-SS---SCCEE-EECSSSEEEECS----------SSEEEEECTT--TCCEEEEEECE------
T ss_pred EEECCCCc-EEEEEECC-CC---CeEEE-EECCCEEEEECC----------CCeEEEEECC--CCcEEEEEEEC------
Confidence 99954221 12233322 12 23334 345558998754 3789999998 5432 333211
Q ss_pred CCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCC-CceEEeccC------CCCCCCCCCceeEEe-
Q 042793 445 NPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEK-PTWRILNVP------GRPPRFAWGHSTCVV- 516 (545)
Q Consensus 445 ~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~-~~W~~~~~~------~~~p~~r~~~~~~~~- 516 (545)
..+.+......+...++++|+--. ..+.|.+.|+++.+ -.|..+... ...+..-.-......
T Consensus 146 ----~~~~p~~~~nele~~dg~lyvn~~------~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~ 215 (266)
T 2iwa_A 146 ----YNGHRVIRLNELEYINGEVWANIW------QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ 215 (266)
T ss_dssp ----ETTEECCCEEEEEEETTEEEEEET------TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET
T ss_pred ----CCCcccccceeEEEECCEEEEecC------CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC
Confidence 112222111122222788887532 25789999997432 123333200 001110011222223
Q ss_pred CCeeEEEEcCCCCcccccccceeeeec
Q 042793 517 GGTRTIVLGGQTGEEWMLSELHELSLV 543 (545)
Q Consensus 517 ~~~~l~i~GG~~~~~~~~~~~~~l~l~ 543 (545)
.++++||-|+.. +.++.+++.
T Consensus 216 ~~~~lfVTgk~~------~~v~~i~l~ 236 (266)
T 2iwa_A 216 ENKRIFVTGKLW------PKLFEIKLH 236 (266)
T ss_dssp TTTEEEEEETTC------SEEEEEEEE
T ss_pred CCCEEEEECCCC------CeEEEEEEe
Confidence 257899998876 446666654
No 77
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=97.15 E-value=0.0012 Score=64.71 Aligned_cols=78 Identities=9% Similarity=0.136 Sum_probs=58.8
Q ss_pred cccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEE
Q 042793 3 DLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIG 82 (545)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~ 82 (545)
+.++++|+++..+.++ ........+...+..+.+...+... +++| .++.++..||+|++|.+.+++.
T Consensus 273 ~~~e~iGr~v~~~~p~----------~~~~~~~~l~~~l~~g~~~~~~~~~-~~~g--~~v~v~~~PI~d~~G~~~G~v~ 339 (369)
T 3cax_A 273 RTPSVLGRPVQLCHPP----------KSVYVVNKILKAFKEGRKKEATFWL-RLRE--KYVYIKYVPLFNEKGEYIGTLE 339 (369)
T ss_dssp CCGGGTTCBTTTSSCG----------GGHHHHHHHHHHHHHTSCSCEEEEE-EETT--EEEEEEEEEEECTTSCEEEEEE
T ss_pred ChHHHcCCcHHHHCCh----------hhHHHHHHHHHHHHcCCceEEEEEE-eeCC--EEEEEEEEEEECCCCCEEEEEE
Confidence 4678899988766532 3344556677777777765555544 3456 4788999999999999999999
Q ss_pred EeeeeeecccC
Q 042793 83 IQFFTEANVDL 93 (545)
Q Consensus 83 ~~~Dite~~~~ 93 (545)
+++|||+.++.
T Consensus 340 v~~DITe~~~l 350 (369)
T 3cax_A 340 MTMDIAPYKKI 350 (369)
T ss_dssp EEEECHHHHTC
T ss_pred EEEcCHHHHHH
Confidence 99999998865
No 78
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.12 E-value=0.2 Score=47.76 Aligned_cols=187 Identities=13% Similarity=0.063 Sum_probs=99.7
Q ss_pred cCceEEEeCCCCCCceEEec---cCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCce-EeccCCCC
Q 042793 256 MNDTFVLDLNSSNPEWQHVH---VSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTW-REISGLAP 331 (545)
Q Consensus 256 ~~~~~~~d~~t~~~~W~~~~---~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W-~~~~~~~~ 331 (545)
.+.+.++|+.+. ++..-. ....+.+...+.++ +.++++|+.... .+.+.++|+.|. +- ..++..
T Consensus 16 ~~~l~~~d~~t~--~~~~~i~~~~n~~~lg~~~~~i~-~~~~~lyv~~~~-----~~~v~viD~~t~--~~~~~i~~~-- 83 (328)
T 3dsm_A 16 NATLSYYDPATC--EVENEVFYRANGFKLGDVAQSMV-IRDGIGWIVVNN-----SHVIFAIDINTF--KEVGRITGF-- 83 (328)
T ss_dssp CBEEEEEETTTT--EEECSHHHHHHSSCCBSCEEEEE-EETTEEEEEEGG-----GTEEEEEETTTC--CEEEEEECC--
T ss_pred CceEEEEECCCC--EEhhhhHhhhcCcccCccceEEE-EECCEEEEEEcC-----CCEEEEEECccc--EEEEEcCCC--
Confidence 347899999987 654311 01122233334554 356799998652 357999999988 43 234332
Q ss_pred CCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceE-EecCCCCC-CCCCCcEEEEECCcEEEEEcccCC
Q 042793 332 PLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWR-EIPVTWTP-PSRLGHTLSVYGGRKILMFGGLAK 409 (545)
Q Consensus 332 ~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~-~~~~~~~p-~~r~~~~~~~~~~~~lyi~GG~~~ 409 (545)
..|+ ..+...++++|+.... .+.+.++|+.+. +-. .++.+... ....-+.++.. ++++|+..-.
T Consensus 84 ~~p~---~i~~~~~g~lyv~~~~------~~~v~~iD~~t~--~~~~~i~~g~~~~~~~~p~~i~~~-~~~lyv~~~~-- 149 (328)
T 3dsm_A 84 TSPR---YIHFLSDEKAYVTQIW------DYRIFIINPKTY--EITGYIECPDMDMESGSTEQMVQY-GKYVYVNCWS-- 149 (328)
T ss_dssp SSEE---EEEEEETTEEEEEEBS------CSEEEEEETTTT--EEEEEEECTTCCTTTCBCCCEEEE-TTEEEEEECT--
T ss_pred CCCc---EEEEeCCCeEEEEECC------CCeEEEEECCCC--eEEEEEEcCCccccCCCcceEEEE-CCEEEEEcCC--
Confidence 2333 2333234599997642 246899996533 332 23322100 00022234444 4499988421
Q ss_pred CCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCC----CCceEE
Q 042793 410 SGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHS----ATQLYL 485 (545)
Q Consensus 410 ~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~----~~~v~~ 485 (545)
..+.|.++|+. +.+....-.. + ..| +......++++|+....+..... .+.+++
T Consensus 150 ------~~~~v~viD~~--t~~~~~~i~~---------g--~~p---~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~ 207 (328)
T 3dsm_A 150 ------YQNRILKIDTE--TDKVVDELTI---------G--IQP---TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYR 207 (328)
T ss_dssp ------TCCEEEEEETT--TTEEEEEEEC---------S--SCB---CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEE
T ss_pred ------CCCEEEEEECC--CCeEEEEEEc---------C--CCc---cceEEcCCCCEEEEECCCccCCccccCCceEEE
Confidence 03689999998 5554432222 1 112 12233346888887543211111 367999
Q ss_pred EcCCC
Q 042793 486 LDPTE 490 (545)
Q Consensus 486 ~d~~~ 490 (545)
+|+++
T Consensus 208 id~~t 212 (328)
T 3dsm_A 208 IDAET 212 (328)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 99963
No 79
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.07 E-value=0.16 Score=45.75 Aligned_cols=156 Identities=19% Similarity=0.132 Sum_probs=93.5
Q ss_pred CceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcE
Q 042793 232 CNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDV 311 (545)
Q Consensus 232 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 311 (545)
+-++....++.||+-.|.... +.+.++|+.+. +-..-. .++..-++..++.. +++||+.... .+.+
T Consensus 22 ftqGL~~~~~~LyestG~~g~----S~v~~vD~~tg--kv~~~~--~l~~~~fgeGi~~~-~~~ly~ltw~-----~~~v 87 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETGR----SSVRKVDLETG--RILQRA--EVPPPYFGAGIVAW-RDRLIQLTWR-----NHEG 87 (243)
T ss_dssp CEEEEEEETTEEEEEECCTTS----CEEEEEETTTC--CEEEEE--ECCTTCCEEEEEEE-TTEEEEEESS-----SSEE
T ss_pred ccccEEEECCEEEEECCCCCC----ceEEEEECCCC--CEEEEE--eCCCCcceeEEEEe-CCEEEEEEee-----CCEE
Confidence 345777788999999886432 37899999987 443321 44554556666655 6699998643 3579
Q ss_pred EEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCce-EEecCCCCCCCCCC
Q 042793 312 FVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVW-REIPVTWTPPSRLG 390 (545)
Q Consensus 312 ~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W-~~~~~~~~p~~r~~ 390 (545)
++||+.|. +.+... +.+..+.+. ..+++++|+.-|. +.++.+|+. +.+- ..+.....+.+...
T Consensus 88 ~v~D~~tl----~~~~ti--~~~~~Gwgl-t~dg~~L~vSdgs-------~~l~~iDp~--t~~~~~~I~V~~~g~~~~~ 151 (243)
T 3mbr_X 88 FVYDLATL----TPRARF--RYPGEGWAL-TSDDSHLYMSDGT-------AVIRKLDPD--TLQQVGSIKVTAGGRPLDN 151 (243)
T ss_dssp EEEETTTT----EEEEEE--ECSSCCCEE-EECSSCEEEECSS-------SEEEEECTT--TCCEEEEEECEETTEECCC
T ss_pred EEEECCcC----cEEEEE--eCCCCceEE-eeCCCEEEEECCC-------CeEEEEeCC--CCeEEEEEEEccCCccccc
Confidence 99999887 333322 112233333 3567789997652 468999954 4333 33332212222111
Q ss_pred -cEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCC
Q 042793 391 -HTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSE 427 (545)
Q Consensus 391 -~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~ 427 (545)
--+...++ +||+---. +++|.+.|+.+
T Consensus 152 lNeLe~~~G-~lyanvw~---------s~~I~vIDp~t 179 (243)
T 3mbr_X 152 LNELEWVNG-ELLANVWL---------TSRIARIDPAS 179 (243)
T ss_dssp EEEEEEETT-EEEEEETT---------TTEEEEECTTT
T ss_pred ceeeEEeCC-EEEEEECC---------CCeEEEEECCC
Confidence 22334455 88854322 58999999983
No 80
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=96.99 E-value=0.0008 Score=53.64 Aligned_cols=72 Identities=14% Similarity=0.015 Sum_probs=50.8
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVI 81 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i 81 (545)
++.++++|+++..+.++. ......+.+.+.+..+++...++.....+| .|+.+++.|+.+ | ++
T Consensus 47 ~~~~e~~G~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~p~~~--g----~v 109 (118)
T 3fg8_A 47 RSRDELLGRVVTEVLPET---------QGSYFDALCRKVLATGREQQTRVDSLYSPG--MTIEVTAAADSG--A----LV 109 (118)
T ss_dssp CCHHHHTTSBHHHHCGGG---------TTSHHHHHHHHHHHHCCCEEEEEECSSSTT--CEEEEEEEEETT--E----EE
T ss_pred CCHHHHcCCcHHHHcCcc---------chHHHHHHHHHHHHcCCceEEEEEEEcCCC--eEEEEEEEEcCC--c----EE
Confidence 466788898876555433 444566777888888888877443333366 588889999864 2 68
Q ss_pred EEeeeeeec
Q 042793 82 GIQFFTEAN 90 (545)
Q Consensus 82 ~~~~Dite~ 90 (545)
++.+|||++
T Consensus 110 ~~~~DITer 118 (118)
T 3fg8_A 110 VHFRDVTAE 118 (118)
T ss_dssp EEEEECSCC
T ss_pred EEEEeccCC
Confidence 899999975
No 81
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.98 E-value=0.11 Score=55.15 Aligned_cols=131 Identities=12% Similarity=0.061 Sum_probs=76.3
Q ss_pred eeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCC---CCC---ccceeEEEEcCCEEEEEcCCCCCcc
Q 042793 234 FSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSP---PPG---RWGHTLSCVNGSHLVVFGGCGRQGL 307 (545)
Q Consensus 234 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~---~~~---r~~~~~~~~~~~~iyv~GG~~~~~~ 307 (545)
.+.++.++.||+.... +.++.+|..|.+..|+.-..... +.. ....+.+ +.+++||+...
T Consensus 71 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~v~v~~~------ 136 (677)
T 1kb0_A 71 ATPVVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVA-LWKGKVYVGAW------ 136 (677)
T ss_dssp CCCEEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCE-EETTEEEEECT------
T ss_pred eCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCce-EECCEEEEEcC------
Confidence 4456789999998652 37999999988778986321110 000 0112333 34668887642
Q ss_pred cCcEEEEecCCCCCceEeccC-CCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEec
Q 042793 308 LNDVFVLDLDAKPPTWREISG-LAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIP 380 (545)
Q Consensus 308 ~~~~~~yd~~t~~~~W~~~~~-~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 380 (545)
-..++++|..|....|+.-.. ..........+.++. ++.+|+..+..+ ......++.||..+.+..|+.-.
T Consensus 137 dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 137 DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAE-YGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccc-cCCCCEEEEEECCCCcEEEEecc
Confidence 146999999998888986432 100001111122333 557777433211 11235699999888888898754
No 82
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.93 E-value=0.2 Score=53.20 Aligned_cols=127 Identities=17% Similarity=0.167 Sum_probs=72.6
Q ss_pred cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCC-CC--C--ccceEEEEcCCEEEEEcCCCCCCCccCcEEE
Q 042793 292 NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPP-LP--R--SWHSSCTLDGTKLIVSGGCADSGVLLSDTFL 366 (545)
Q Consensus 292 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~-~~--r--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 366 (545)
.+++||+... .+.++.+|..|....|+.-...... .+ . .......+.++++|+... -..++.
T Consensus 76 ~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg~l~a 142 (677)
T 1kb0_A 76 VDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DGRLIA 142 (677)
T ss_dssp ETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TSEEEE
T ss_pred ECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CCEEEE
Confidence 3668998764 2569999999987889865432100 00 0 011123344668888532 145899
Q ss_pred EecCCCCCceEEecCCCCCC-CCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEee
Q 042793 367 LDLSMEKPVWREIPVTWTPP-SRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVT 436 (545)
Q Consensus 367 ~d~~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~ 436 (545)
+|..+.+..|+.-.....+. .....+.++.++ .+|+..+....+ ....++.||..+....|+.-.
T Consensus 143 lD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~----~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 143 LDAATGKEVWHQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYG----VRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp EETTTCCEEEEEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTC----CBCEEEEEETTTCCEEEEEES
T ss_pred EECCCCCEEeeecCCcCcCcCcccccCcEEECC-EEEEEecccccC----CCCEEEEEECCCCcEEEEecc
Confidence 99887878898753201111 111122234555 777644322111 146799999987677898653
No 83
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.16 Score=48.92 Aligned_cols=232 Identities=8% Similarity=-0.011 Sum_probs=108.6
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEc-C--CEEEEEcCCCCCcccCcEEEEec
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVN-G--SHLVVFGGCGRQGLLNDVFVLDL 316 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~ 316 (545)
++.+++.|+.+. .+.++|+... .++.+. .+........+..+. + +.+++.|+.+ ..+.++|+
T Consensus 22 ~~~~l~~~~~dg------~i~iw~~~~~--~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~ 86 (379)
T 3jrp_A 22 YGKRLATCSSDK------TIKIFEVEGE--THKLID--TLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKE 86 (379)
T ss_dssp SSSEEEEEETTS------CEEEEEEETT--EEEEEE--EECCCSSCEEEEEECCGGGCSEEEEEETT-----SCEEEEEE
T ss_pred CCCEEEEEECCC------cEEEEecCCC--cceeee--EecCCCCcEEEEEeCCCCCCCEEEEeccC-----CEEEEEEc
Confidence 345566665432 5777887654 454432 111111222223332 1 3566666654 35889999
Q ss_pred CCCCCceEeccCCCCCCCCccceEEEEc-C--CEEEEEcCCCCCCCccCcEEEEecCCCCCc-eEEecCCCCCCCCCCcE
Q 042793 317 DAKPPTWREISGLAPPLPRSWHSSCTLD-G--TKLIVSGGCADSGVLLSDTFLLDLSMEKPV-WREIPVTWTPPSRLGHT 392 (545)
Q Consensus 317 ~t~~~~W~~~~~~~~~~~r~~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~-W~~~~~~~~p~~r~~~~ 392 (545)
.+. .|..+.... .....-.++.+. + +.+++.|+.+ ..+.+||+...... -..+.. .. ..-.+
T Consensus 87 ~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~--~~--~~v~~ 152 (379)
T 3jrp_A 87 ENG--RWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDA--HA--IGVNS 152 (379)
T ss_dssp ETT--EEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEEC--CT--TCEEE
T ss_pred CCC--ceeEeeeec--CCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecC--CC--CceEE
Confidence 988 776655431 111122223332 2 3566666542 35788886543111 111111 11 11122
Q ss_pred EEEEC-------------CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEE
Q 042793 393 LSVYG-------------GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVA 459 (545)
Q Consensus 393 ~~~~~-------------~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~ 459 (545)
++... ++.+++.|+.+ ..+..||+......+..+... ......-.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~------------~~h~~~v~~ 211 (379)
T 3jrp_A 153 ASWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQTYVLESTL------------EGHSDWVRD 211 (379)
T ss_dssp EEECCCC----------CTTCEEEEEETT---------SCEEEEEEETTTTEEEEEEEE------------CCCSSCEEE
T ss_pred EEEcCccccccccccCCCCCCEEEEEeCC---------CeEEEEEecCCCcceeeEEEE------------ecccCcEeE
Confidence 22222 23677777653 567777776434456555433 111111223
Q ss_pred EEe-cC---CEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCC
Q 042793 460 VSL-PG---GRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQT 528 (545)
Q Consensus 460 ~~~-~~---~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~ 528 (545)
+.+ .+ +.+++.|+.+ ..+.+||+.+....+...... .......-.+.....++.+++.|+.+
T Consensus 212 ~~~sp~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~d 277 (379)
T 3jrp_A 212 VAWSPTVLLRSYLASVSQD------RTCIIWTQDNEQGPWKKTLLK-EEKFPDVLWRASWSLSGNVLALSGGD 277 (379)
T ss_dssp EEECCCCSSSEEEEEEETT------SCEEEEEESSTTSCCEEEESS-SSCCSSCEEEEEECSSSCCEEEEESS
T ss_pred EEECCCCCCCCeEEEEeCC------CEEEEEeCCCCCccceeeeec-cccCCCcEEEEEEcCCCCEEEEecCC
Confidence 333 34 6788888754 457888886433333332211 11111111222233456677777665
No 84
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=96.86 E-value=0.0033 Score=50.26 Aligned_cols=43 Identities=19% Similarity=0.077 Sum_probs=32.3
Q ss_pred CCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeee
Q 042793 44 GIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTE 88 (545)
Q Consensus 44 ~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dit 88 (545)
++....+....+|||+.+|+.++..++.+ +|. ..++++.+|||
T Consensus 84 ~~~~~~e~~~~~~dG~~~~~~~~~~~~~~-~~~-~~~~~~~~DIT 126 (126)
T 3bwl_A 84 DERRKFEGLYERRDGSTMSVEVHLLRFNL-EGE-DRFLAISRDIT 126 (126)
T ss_dssp TCEEEEEEEEECTTSCEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred CCCcceEEEEEeCCCCEEEEEEEeEEEec-CCc-EEEEEEEEeCC
Confidence 34455667778999999999998888754 444 35789999997
No 85
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=96.70 E-value=0.00047 Score=54.44 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=47.5
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHH-HHc-CCeE---EEEEEeeecCCcceeEEEEEEEeecCCCC
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRC-LEE-GIEF---QGELLNFRKDGSPLMNRLRLSPIYGDDET 76 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~---~~e~~~~~kdG~~~w~~~~~~pi~d~~g~ 76 (545)
++.+|++|+++..+..++ . ....+.+... +.. +... ..++..++|||+.+|+.++++|+.++++.
T Consensus 34 ~~~~el~g~~~~~l~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~v~~~~~~~~~~~~~ 103 (114)
T 1ll8_A 34 YSSQDLIGQKLTQFFLRS---------D-SDVVEALSEEHMEADGHAAVVFGTVVDIISRSGEKIPVSVWMKRMRQERRL 103 (114)
T ss_dssp CCTTTTTTSBGGGGSSCT---------T-THHHHHTTSSTTSSSSCSSCCCSSSEEECCTTCCCEEEECCEECCBSSSSB
T ss_pred CCHHHHcCCCHHHhcCcc---------h-hHHHHHHHHHhhccCCcceeccCcEEEEEecCCCEEEEEEEEEeeccCCcc
Confidence 677888888866554322 2 2223333221 111 1111 23466789999999999999999876543
Q ss_pred EEEEEEEeeeee
Q 042793 77 ITHVIGIQFFTE 88 (545)
Q Consensus 77 ~~~~i~~~~Dit 88 (545)
+++++++|++
T Consensus 104 --~~v~~~~~~~ 113 (114)
T 1ll8_A 104 --CCVVVLEPVE 113 (114)
T ss_dssp --EEEEEEEECC
T ss_pred --EEEEEEeecC
Confidence 5789999886
No 86
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.69 E-value=0.29 Score=44.53 Aligned_cols=194 Identities=13% Similarity=0.078 Sum_probs=103.1
Q ss_pred EcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 291 VNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 291 ~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
+.++.+|+..|..+. +.+.++|++|. +=..--.+ + ++.+...+...++++|+.... .+.+++||..
T Consensus 50 ~~~~~LyestG~~g~---S~v~~vD~~Tg--kv~~~~~l--~-~~~FgeGit~~g~~ly~ltw~------~~~v~v~D~~ 115 (262)
T 3nol_A 50 YRNGYFYESTGLNGR---SSIRKVDIESG--KTLQQIEL--G-KRYFGEGISDWKDKIVGLTWK------NGLGFVWNIR 115 (262)
T ss_dssp EETTEEEEEEEETTE---EEEEEECTTTC--CEEEEEEC--C-TTCCEEEEEEETTEEEEEESS------SSEEEEEETT
T ss_pred EECCEEEEECCCCCC---ceEEEEECCCC--cEEEEEec--C-CccceeEEEEeCCEEEEEEee------CCEEEEEECc
Confidence 336699999886442 46899999998 33322222 2 233333344557799998653 2569999954
Q ss_pred CCCCce-EEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCce-EEeecCCCCCCCCCCC
Q 042793 371 MEKPVW-REIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCW-RCVTGSGMPGAGNPGG 448 (545)
Q Consensus 371 ~~~~~W-~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W-~~v~~~~~~~~~~~~g 448 (545)
+ .+- ..++. +-.+.+++ .+++.||+.-| ++.++.+|+. +.+- ..+...
T Consensus 116 t--~~~~~ti~~-----~~eG~glt-~dg~~L~~SdG----------s~~i~~iDp~--T~~v~~~I~V~---------- 165 (262)
T 3nol_A 116 N--LRQVRSFNY-----DGEGWGLT-HNDQYLIMSDG----------TPVLRFLDPE--SLTPVRTITVT---------- 165 (262)
T ss_dssp T--CCEEEEEEC-----SSCCCCEE-ECSSCEEECCS----------SSEEEEECTT--TCSEEEEEECE----------
T ss_pred c--CcEEEEEEC-----CCCceEEe-cCCCEEEEECC----------CCeEEEEcCC--CCeEEEEEEec----------
Confidence 3 232 23332 22445554 44558888765 3789999998 5433 233211
Q ss_pred CCCCCCcc-eEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCC-------CCCCCCceeEEeC-Ce
Q 042793 449 IAPPPRLD-HVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRP-------PRFAWGHSTCVVG-GT 519 (545)
Q Consensus 449 ~~p~~r~~-~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~-------p~~r~~~~~~~~~-~~ 519 (545)
..+.+... .-...+ +++||+-- ...+.|.+.|+++.+ .=..+...+-. +..-.-.+.+... ++
T Consensus 166 ~~g~~~~~lNELe~~-~G~lyan~------w~~~~I~vIDp~tG~-V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~ 237 (262)
T 3nol_A 166 AHGEELPELNELEWV-DGEIFANV------WQTNKIVRIDPETGK-VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH 237 (262)
T ss_dssp ETTEECCCEEEEEEE-TTEEEEEE------TTSSEEEEECTTTCB-EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred cCCccccccceeEEE-CCEEEEEE------ccCCeEEEEECCCCc-EEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence 00111111 112233 88888632 235789999997432 22223221111 1111112222222 57
Q ss_pred eEEEEcCCCCcccccccceeeee
Q 042793 520 RTIVLGGQTGEEWMLSELHELSL 542 (545)
Q Consensus 520 ~l~i~GG~~~~~~~~~~~~~l~l 542 (545)
++||-|-+- ..+|...+
T Consensus 238 ~lfVTGK~W------p~~~ev~~ 254 (262)
T 3nol_A 238 RLFVTGKLW------PKVFEITL 254 (262)
T ss_dssp EEEEEETTC------SEEEEEEE
T ss_pred EEEEECCCC------CceEEEEE
Confidence 899988765 44666554
No 87
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.63 E-value=0.27 Score=48.89 Aligned_cols=233 Identities=16% Similarity=0.100 Sum_probs=109.5
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceE-EeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQ-HVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
.+..++.|+.+ ..+.++|+.+. +-. .+. . ......+..+++ ..++.|+.+ ..+.+||+.+
T Consensus 208 ~~~~l~s~s~d------g~i~~wd~~~~--~~~~~~~--~---~~~~v~~~~~~~-~~l~~~~~d-----g~i~iwd~~~ 268 (445)
T 2ovr_B 208 HEKRVVSGSRD------ATLRVWDIETG--QCLHVLM--G---HVAAVRCVQYDG-RRVVSGAYD-----FMVKVWDPET 268 (445)
T ss_dssp ETTEEEEEETT------SEEEEEESSSC--CEEEEEE--C---CSSCEEEEEECS-SCEEEEETT-----SCEEEEEGGG
T ss_pred cCCEEEEEeCC------CEEEEEECCCC--cEEEEEc--C---CcccEEEEEECC-CEEEEEcCC-----CEEEEEECCC
Confidence 34445555543 26788888765 322 121 1 111123334455 455666643 3588899877
Q ss_pred CCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECC
Q 042793 319 KPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGG 398 (545)
Q Consensus 319 ~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 398 (545)
. .- +...... ...-.++..++ ..++.|+.+ +.+.+||+.+..... .+.. . ..........+
T Consensus 269 ~--~~--~~~~~~~--~~~v~~~~~~~-~~l~~~~~d------~~i~i~d~~~~~~~~-~~~~--~---~~~v~~~~~~~ 329 (445)
T 2ovr_B 269 E--TC--LHTLQGH--TNRVYSLQFDG-IHVVSGSLD------TSIRVWDVETGNCIH-TLTG--H---QSLTSGMELKD 329 (445)
T ss_dssp T--EE--EEEECCC--SSCEEEEEECS-SEEEEEETT------SCEEEEETTTCCEEE-EECC--C---CSCEEEEEEET
T ss_pred C--cE--eEEecCC--CCceEEEEECC-CEEEEEeCC------CeEEEEECCCCCEEE-EEcC--C---cccEEEEEEeC
Confidence 6 22 2211101 11122334445 555666542 358899975432221 2211 1 11122233444
Q ss_pred cEEEEEcccCCCCCCccccCcEEEEeCCCCCCce-EEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCC
Q 042793 399 RKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCW-RCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGL 477 (545)
Q Consensus 399 ~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W-~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~ 477 (545)
.+++.|+. ...+..||+. +.+- ..+... ......-.++.. ++.+++.|+.+
T Consensus 330 -~~l~~~~~---------dg~i~vwd~~--~~~~~~~~~~~------------~~~~~~v~~~~~-~~~~l~s~~~d--- 381 (445)
T 2ovr_B 330 -NILVSGNA---------DSTVKIWDIK--TGQCLQTLQGP------------NKHQSAVTCLQF-NKNFVITSSDD--- 381 (445)
T ss_dssp -TEEEEEET---------TSCEEEEETT--TCCEEEEECST------------TSCSSCEEEEEE-CSSEEEEEETT---
T ss_pred -CEEEEEeC---------CCeEEEEECC--CCcEEEEEccC------------CCCCCCEEEEEE-CCCEEEEEeCC---
Confidence 45566654 3678888987 3332 222111 011122234444 66777777754
Q ss_pred CCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeecc
Q 042793 478 HSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 478 ~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
..+.+||+.+.+ .-..+......+....-.+.....++.+++.|+.++.. ...+++||++.
T Consensus 382 ---g~v~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~--~~~l~v~df~~ 442 (445)
T 2ovr_B 382 ---GTVKLWDLKTGE-FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE--ETKLLVLDFDV 442 (445)
T ss_dssp ---SEEEEEETTTCC-EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS--CCEEEEEECCC
T ss_pred ---CeEEEEECCCCc-eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCC--ccEEEEEECCC
Confidence 578999986322 11122110000111011122223467788888887653 24577777754
No 88
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=96.61 E-value=0.00098 Score=52.67 Aligned_cols=63 Identities=13% Similarity=-0.029 Sum_probs=36.8
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCC
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDET 76 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~ 76 (545)
++++|++|+++..+ .||++.....+.+. ........+++.++|||+.+|+++++.++.++++.
T Consensus 34 y~~~el~G~~~~~~---------ihp~D~~~~~~~~~---~~~~~~~~e~r~~~kdG~~~wve~~~~~v~~~~~~ 96 (111)
T 2vlg_A 34 YLQGEMIGSFLKTF---------LHEEDQFLVESYFY---NEHHLMPCTFRFIKKDHTIVWVEAAVEIVTTRAER 96 (111)
T ss_dssp CCHHHHTTSBGGGG---------BCGGGHHHHHHHHH---CSCCSSCEEEEEECTTSCEEEEEEEEEEC------
T ss_pred CCHHHHcCCcHHHe---------ECHhHHHHHHHHHh---ccCCCccEEEEEEcCCCCEEEEEEEEEEEecccCC
Confidence 56778888775422 23444433333221 12233456788889999999999999999987653
No 89
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.60 E-value=0.52 Score=44.75 Aligned_cols=196 Identities=9% Similarity=0.054 Sum_probs=94.7
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCC-----CccceeEEEE-cCCEEEEEcCCCCCcccCcEEE
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPP-----GRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFV 313 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~-----~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 313 (545)
++.+|+.+..+ +.++++|+.+.... ..+....... +..-+.++.. +++++|+.+... ...+++
T Consensus 100 g~~l~v~~~~~------~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~~i~~ 168 (353)
T 3vgz_A 100 TQTLWFGNTVN------SAVTAIDAKTGEVK-GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----ESVIWV 168 (353)
T ss_dssp TTEEEEEETTT------TEEEEEETTTCCEE-EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----SCEEEE
T ss_pred CCEEEEEecCC------CEEEEEeCCCCeeE-EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----CceEEE
Confidence 34688776532 27999999876222 2232211111 1111233322 456788776321 245899
Q ss_pred EecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEE
Q 042793 314 LDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTL 393 (545)
Q Consensus 314 yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~ 393 (545)
+|+.+....+. ++.. ...+. ..+..-+++.+|+... -+.++++|+.+.+..+. +......+.....++
T Consensus 169 ~d~~~~~~~~~-~~~~-~~~~~--~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~ 236 (353)
T 3vgz_A 169 VDGGNIKLKTA-IQNT-GKMST--GLALDSEGKRLYTTNA-------DGELITIDTADNKILSR-KKLLDDGKEHFFINI 236 (353)
T ss_dssp EETTTTEEEEE-ECCC-CTTCC--CCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEE-EECCCSSSCCCEEEE
T ss_pred EcCCCCceEEE-ecCC-CCccc--eEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEE-EEcCCCCCCcccceE
Confidence 99988722222 2211 01111 1122235666777643 14688999654422222 221111111122233
Q ss_pred EEE-CCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcC
Q 042793 394 SVY-GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGG 472 (545)
Q Consensus 394 ~~~-~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG 472 (545)
+.. +++.+|+.... .+.++.||+. +.+....... +.+ .+.++.-.++.+|+.+.
T Consensus 237 ~~s~dg~~l~~~~~~---------~~~v~~~d~~--~~~~~~~~~~------------~~~--~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 237 SLDTARQRAFITDSK---------AAEVLVVDTR--NGNILAKVAA------------PES--LAVLFNPARNEAYVTHR 291 (353)
T ss_dssp EEETTTTEEEEEESS---------SSEEEEEETT--TCCEEEEEEC------------SSC--CCEEEETTTTEEEEEET
T ss_pred EECCCCCEEEEEeCC---------CCEEEEEECC--CCcEEEEEEc------------CCC--ceEEECCCCCEEEEEEC
Confidence 333 34467766432 3789999997 4444333222 222 22333332345777654
Q ss_pred cCCCCCCCCceEEEcCC
Q 042793 473 SVAGLHSATQLYLLDPT 489 (545)
Q Consensus 473 ~~~~~~~~~~v~~~d~~ 489 (545)
. .+.+.+||+.
T Consensus 292 ~------~~~v~~~d~~ 302 (353)
T 3vgz_A 292 Q------AGKVSVIDAK 302 (353)
T ss_dssp T------TTEEEEEETT
T ss_pred C------CCeEEEEECC
Confidence 3 2579999986
No 90
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.56 E-value=0.4 Score=49.63 Aligned_cols=127 Identities=18% Similarity=0.205 Sum_probs=71.8
Q ss_pred cCCEEEEEcCCCCCcccCcEEEEec-CCCCCceEeccCCCCC-C--CC--ccceEEEEcCCEEEEEcCCCCCCCccCcEE
Q 042793 292 NGSHLVVFGGCGRQGLLNDVFVLDL-DAKPPTWREISGLAPP-L--PR--SWHSSCTLDGTKLIVSGGCADSGVLLSDTF 365 (545)
Q Consensus 292 ~~~~iyv~GG~~~~~~~~~~~~yd~-~t~~~~W~~~~~~~~~-~--~r--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 365 (545)
.+++||+.... .+.++++|. .+....|+.-...... . .. ......++.++++|+... -..++
T Consensus 61 ~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~ 128 (571)
T 2ad6_A 61 IGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------NGHLL 128 (571)
T ss_dssp ETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEE
T ss_pred ECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------CCEEE
Confidence 36689997652 246999999 8888889864332100 0 00 001112344668888643 13589
Q ss_pred EEecCCCCCceEEecCCCCCCC-CCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEee
Q 042793 366 LLDLSMEKPVWREIPVTWTPPS-RLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVT 436 (545)
Q Consensus 366 ~~d~~~~~~~W~~~~~~~~p~~-r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~ 436 (545)
.+|..+.+..|+.-... .+.. ....+.++.++ .+|+-.+....+ ....++.||..+....|+.-.
T Consensus 129 alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~g-~v~vg~~~~~~~----~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 129 ALDAKTGKINWEVEVCD-PKVGSTLTQAPFVAKD-TVLMGCSGAELG----VRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EEETTTCCEEEEEECCC-GGGTCBCCSCCEEETT-EEEEECBCGGGT----CCCEEEEEETTTCCEEEEEES
T ss_pred EEECCCCCEEEEecCCC-CCccceeccCCEEECC-EEEEEecCCccC----CCCEEEEEECCCCcEEEEEcc
Confidence 99988777789864321 1111 11112234555 777654321111 136799999987677897643
No 91
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.13 Score=55.36 Aligned_cols=232 Identities=8% Similarity=0.006 Sum_probs=109.4
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cC--CEEEEEcCCCCCcccCcEEEEecC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NG--SHLVVFGGCGRQGLLNDVFVLDLD 317 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~yd~~ 317 (545)
+.+++.||.+. .+.++|+.+. .+..+. .+........+..+ .+ +..++.|+.+ ..+.++|+.
T Consensus 21 g~~latg~~dg------~I~vwd~~~~--~~~~~~--~l~~h~~~V~~l~~s~~~~~~~l~s~s~D-----g~I~vwd~~ 85 (753)
T 3jro_A 21 GKRLATCSSDK------TIKIFEVEGE--THKLID--TLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKEE 85 (753)
T ss_dssp SCCEEEEETTT------EEEEEEEETT--EEEEEE--EECCCSSCEEEEEECCTTSCSEEEEEETT-----SCEEEEEEE
T ss_pred CCeEEEEECCC------cEEEEecCCC--CCccce--eccCCcCceEEEEecCCCCCCEEEEEeCC-----CeEEEEECC
Confidence 44556665432 6777887654 555443 11111222233333 22 3566677654 358899998
Q ss_pred CCCCceEeccCCCCCCCCccceEEEEc-C--CEEEEEcCCCCCCCccCcEEEEecCCCCCce-EEecCCCCCCCCCCcEE
Q 042793 318 AKPPTWREISGLAPPLPRSWHSSCTLD-G--TKLIVSGGCADSGVLLSDTFLLDLSMEKPVW-REIPVTWTPPSRLGHTL 393 (545)
Q Consensus 318 t~~~~W~~~~~~~~~~~r~~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W-~~~~~~~~p~~r~~~~~ 393 (545)
++ .|..+.... .....-.++.+. + +.+++.|+.+ ..+.+||+......- ..+.. .+.+ -.++
T Consensus 86 ~~--~~~~~~~~~--~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~~~~~~--~~~~--v~~l 151 (753)
T 3jro_A 86 NG--RWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDA--HAIG--VNSA 151 (753)
T ss_dssp TT--EEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCCEEEEC--CSSC--EEEE
T ss_pred CC--ccccccccc--CCCCCeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcceeEeec--CCCc--eEEE
Confidence 88 776655431 111122223332 2 3566777643 357888865431111 11111 1111 1122
Q ss_pred EEEC-------------CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEE
Q 042793 394 SVYG-------------GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAV 460 (545)
Q Consensus 394 ~~~~-------------~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~ 460 (545)
.... ++.+++.|+.+ ..|..||..+....+..+... ......-.++
T Consensus 152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~d---------g~I~iwd~~~~~~~~~~~~~~------------~~h~~~V~~l 210 (753)
T 3jro_A 152 SWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQTYVLESTL------------EGHSDWVRDV 210 (753)
T ss_dssp EECCCC---------CGGGCCEEEEETT---------SCEEEEEEETTTTEEEEEEEE------------CCCSSCEEEE
T ss_pred EecCcccccccccccCCCCCEEEEEECC---------CeEEEEeccCCcccceeeeee------------cCCCCcEEEE
Confidence 2222 23566676652 557777776434555555433 1111112233
Q ss_pred Ee-cC---CEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCC
Q 042793 461 SL-PG---GRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTG 529 (545)
Q Consensus 461 ~~-~~---~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~ 529 (545)
.+ .+ +++++.||.+ +.+.+||+.+....+..... ........-.+.+...++.+++.||.++
T Consensus 211 ~~sp~~~~~~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~-~~~~~~~~v~~l~~spdg~~l~s~s~Dg 276 (753)
T 3jro_A 211 AWSPTVLLRSYLASVSQD------RTCIIWTQDNEQGPWKKTLL-KEEKFPDVLWRASWSLSGNVLALSGGDN 276 (753)
T ss_dssp EECCCCSSSEEEEEEESS------SCEEEEEESSSSSCCBCCBS-SSSCCSSCCCCEEECTTTCCEEEECSSS
T ss_pred EeccCCCCCCEEEEEecC------CEEEEecCCCCCCcceeEEe-ccCCCCCceEEEEEcCCCCEEEEEcCCC
Confidence 33 34 6888888854 45888888643222222211 1111111112333334667777777653
No 92
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.48 E-value=0.93 Score=46.88 Aligned_cols=131 Identities=14% Similarity=0.174 Sum_probs=75.6
Q ss_pred eeeEEECCEEEEEcCCCCCCCccCceEEEeC-CCCCCceEEeccCCC---CCC---ccceeEEEEcCCEEEEEcCCCCCc
Q 042793 234 FSACAVGNRVVLFGGEGVNMQPMNDTFVLDL-NSSNPEWQHVHVSSP---PPG---RWGHTLSCVNGSHLVVFGGCGRQG 306 (545)
Q Consensus 234 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~-~t~~~~W~~~~~~~~---~~~---r~~~~~~~~~~~~iyv~GG~~~~~ 306 (545)
.+.++.++.||+.... ...++.+|. .+.+..|+.-..... +.+ ....+.+ +.+++||+...
T Consensus 56 ~~P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~~~----- 123 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLA-YGAGQIVKKQA----- 123 (571)
T ss_dssp SCCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCE-EETTEEEEECT-----
T ss_pred cccEEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccE-EECCEEEEEeC-----
Confidence 4556789999998752 137999999 888778986321110 000 0112233 34668888643
Q ss_pred ccCcEEEEecCCCCCceEeccCCCCCCC-CccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEec
Q 042793 307 LLNDVFVLDLDAKPPTWREISGLAPPLP-RSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIP 380 (545)
Q Consensus 307 ~~~~~~~yd~~t~~~~W~~~~~~~~~~~-r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 380 (545)
-..++++|..|....|+.-.... +.. ....+.++. ++.+|+-.+..+ ...-..++.||..+.+..|+.-.
T Consensus 124 -dg~l~alD~~tG~~~W~~~~~~~-~~~~~~~~~P~v~-~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 124 -NGHLLALDAKTGKINWEVEVCDP-KVGSTLTQAPFVA-KDTVLMGCSGAE-LGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp -TSEEEEEETTTCCEEEEEECCCG-GGTCBCCSCCEEE-TTEEEEECBCGG-GTCCCEEEEEETTTCCEEEEEES
T ss_pred -CCEEEEEECCCCCEEEEecCCCC-CccceeccCCEEE-CCEEEEEecCCc-cCCCCEEEEEECCCCcEEEEEcc
Confidence 14689999999888898532210 111 111122334 557877543211 01124689999888888897654
No 93
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.48 E-value=0.0051 Score=59.54 Aligned_cols=100 Identities=9% Similarity=-0.110 Sum_probs=62.0
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCE-EEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETI-THV 80 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~-~~~ 80 (545)
++.+|++|+++..+. ........+...+..+.+...+ ...+...|+.+++.|+.+.+|.. .++
T Consensus 43 ~~~~e~~G~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~ 106 (349)
T 3a0r_A 43 LKKENVLGRRLKDLP------------DFEEIGSVAESVFENKEPVFLN----FYKFGERYFNIRFSPFRNAKTQLLEGV 106 (349)
T ss_dssp CCSTTTTTCBSTTST------------TTTHHHHHHHHHHHHCCCCEEE----CCCBTTBCCEEEEEEECCTTTTSSCEE
T ss_pred CCHHHHcCcCHHHCc------------ChhHHHHHHHHHHhcCCceeec----ccccCceEEEEEEEEEEcCCCceeeEE
Confidence 567788888766552 2223334455555666544332 12234458889999999988775 589
Q ss_pred EEEeeeeeecccCCCCCCchhH------HHhhhhhhhhccccc
Q 042793 81 IGIQFFTEANVDLGPVPGYPVK------EFLKSSERQRSFFSG 117 (545)
Q Consensus 81 i~~~~Dite~~~~~~~~~~~~~------~~~~~~~r~~~~~~~ 117 (545)
+++.+|||++++.+.+.++..+ .+....|.+++.+.+
T Consensus 107 ~~~~~DiTe~~~~e~~~~~~~~~~~~~~~~~~i~Helr~pL~~ 149 (349)
T 3a0r_A 107 IITIDDVTELYKYEEERKRRERLSILGEMTARVAHEIRNPITI 149 (349)
T ss_dssp EEEEECCSTTTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 9999999999977554443221 122244666666653
No 94
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.45 E-value=0.1 Score=47.67 Aligned_cols=194 Identities=15% Similarity=0.086 Sum_probs=104.0
Q ss_pred EcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 291 VNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 291 ~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
+.++.||+..|..+ .+.++|++|....-+. + + ++.+...+...++++|+.... -+.+++||..
T Consensus 62 ~~~~~Ly~stG~~g-----~v~~iD~~Tgkv~~~~---l--~-~~~FgeGit~~g~~Ly~ltw~------~~~v~V~D~~ 124 (268)
T 3nok_A 62 FHQGHFFESTGHQG-----TLRQLSLESAQPVWME---R--L-GNIFAEGLASDGERLYQLTWT------EGLLFTWSGM 124 (268)
T ss_dssp EETTEEEEEETTTT-----EEEECCSSCSSCSEEE---E--C-TTCCEEEEEECSSCEEEEESS------SCEEEEEETT
T ss_pred EECCEEEEEcCCCC-----EEEEEECCCCcEEeEE---C--C-CCcceeEEEEeCCEEEEEEcc------CCEEEEEECC
Confidence 45679999988653 3899999988332222 2 2 233323345567899998553 2568999954
Q ss_pred CCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCce-EEeecCCCCCCCCCCCC
Q 042793 371 MEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCW-RCVTGSGMPGAGNPGGI 449 (545)
Q Consensus 371 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W-~~v~~~~~~~~~~~~g~ 449 (545)
+. +.+.. .+.+..+.+++.-+ ++||+.-| ++.++.+|++ +.+- ..+... .
T Consensus 125 --Tl--~~~~t--i~~~~eGwGLt~Dg-~~L~vSdG----------s~~l~~iDp~--T~~v~~~I~V~----------~ 175 (268)
T 3nok_A 125 --PP--QRERT--TRYSGEGWGLCYWN-GKLVRSDG----------GTMLTFHEPD--GFALVGAVQVK----------L 175 (268)
T ss_dssp --TT--EEEEE--EECSSCCCCEEEET-TEEEEECS----------SSEEEEECTT--TCCEEEEEECE----------E
T ss_pred --cC--cEEEE--EeCCCceeEEecCC-CEEEEECC----------CCEEEEEcCC--CCeEEEEEEeC----------C
Confidence 22 22221 11122345555444 49999875 3789999998 5433 233211 1
Q ss_pred CCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCC-CceEEeccC-CC----CCCCCCCceeEEeC--CeeE
Q 042793 450 APPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEK-PTWRILNVP-GR----PPRFAWGHSTCVVG--GTRT 521 (545)
Q Consensus 450 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~-~~W~~~~~~-~~----~p~~r~~~~~~~~~--~~~l 521 (545)
.+.+...-......+++||+-- ...+.|.+.|+++.+ ..|..+... +. ....-.....+++. +++|
T Consensus 176 ~g~~v~~lNeLe~~dG~lyanv------w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl 249 (268)
T 3nok_A 176 RGQPVELINELECANGVIYANI------WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRI 249 (268)
T ss_dssp TTEECCCEEEEEEETTEEEEEE------TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred CCcccccccccEEeCCEEEEEE------CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEE
Confidence 1222211122223388888632 235789999997432 124333210 00 01111112333333 5789
Q ss_pred EEEcCCCCcccccccceeeee
Q 042793 522 IVLGGQTGEEWMLSELHELSL 542 (545)
Q Consensus 522 ~i~GG~~~~~~~~~~~~~l~l 542 (545)
||-|-+- ..+|...+
T Consensus 250 fVTGK~W------p~~~ev~~ 264 (268)
T 3nok_A 250 FMTGKLW------PRLFEVRL 264 (268)
T ss_dssp EEEETTC------SEEEEEEE
T ss_pred EEeCCCC------CceEEEEE
Confidence 9988654 44665554
No 95
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.45 E-value=0.28 Score=46.32 Aligned_cols=152 Identities=5% Similarity=0.007 Sum_probs=70.7
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEE-EcCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSC-VNGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
++.+|+.+..+ ..++++|+.+....-..+. ....+. +.++. -+++++| .+...+ ....++++|+.+
T Consensus 51 g~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~--~~~~~~--~~~~~s~dg~~l~-~~~~~~--~~~~i~v~d~~~ 117 (331)
T 3u4y_A 51 CSNVVVTSDFC------QTLVQIETQLEPPKVVAIQ--EGQSSM--ADVDITPDDQFAV-TVTGLN--HPFNMQSYSFLK 117 (331)
T ss_dssp SCEEEEEESTT------CEEEEEECSSSSCEEEEEE--ECSSCC--CCEEECTTSSEEE-ECCCSS--SSCEEEEEETTT
T ss_pred CCEEEEEeCCC------CeEEEEECCCCceeEEecc--cCCCCc--cceEECCCCCEEE-EecCCC--CcccEEEEECCC
Confidence 34577776532 2799999987721022222 112222 21222 2455666 332211 112799999988
Q ss_pred CCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCc-EEEEecCCCCCceEEecCCCCCCCCCCcEEEEE
Q 042793 319 KPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSD-TFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVY 396 (545)
Q Consensus 319 ~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~-~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 396 (545)
. +-...-.. ....+..+.. +++.+|+.+... +. +.+|+++......... ....+.......++..
T Consensus 118 ~--~~~~~~~~----~~~~~~~~~spdg~~l~~~~~~~------~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~s 184 (331)
T 3u4y_A 118 N--KFISTIPI----PYDAVGIAISPNGNGLILIDRSS------ANTVRRFKIDADGVLFDTG-QEFISGGTRPFNITFT 184 (331)
T ss_dssp T--EEEEEEEC----CTTEEEEEECTTSSCEEEEEETT------TTEEEEEEECTTCCEEEEE-EEEECSSSSEEEEEEC
T ss_pred C--CeEEEEEC----CCCccceEECCCCCEEEEEecCC------CceEEEEEECCCCcEeecC-CccccCCCCccceEEC
Confidence 7 44322111 1111233322 344577765421 34 6777765432221110 0001111112334333
Q ss_pred CCc-EEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 397 GGR-KILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 397 ~~~-~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.++ .+|+.+.. .+.+.+||+.
T Consensus 185 pdg~~l~v~~~~---------~~~v~v~d~~ 206 (331)
T 3u4y_A 185 PDGNFAFVANLI---------GNSIGILETQ 206 (331)
T ss_dssp TTSSEEEEEETT---------TTEEEEEECS
T ss_pred CCCCEEEEEeCC---------CCeEEEEECC
Confidence 333 57776543 3678899987
No 96
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.42 E-value=1.2 Score=47.17 Aligned_cols=128 Identities=13% Similarity=0.060 Sum_probs=75.1
Q ss_pred eeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCC-----C---ccceeEEEEcCCEEEEEcCCCCC
Q 042793 234 FSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPP-----G---RWGHTLSCVNGSHLVVFGGCGRQ 305 (545)
Q Consensus 234 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~-----~---r~~~~~~~~~~~~iyv~GG~~~~ 305 (545)
.+-++.++.||+.... ..++.+|..|.+..|+.-. ..+. . ....+.+ +.+++||+...
T Consensus 64 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~~~~-~~~g~v~v~~~---- 129 (689)
T 1yiq_A 64 ATPIVVDGVMYTTGPF-------SVVYALDARDGRLIWKYDP--QSDRHRAGEACCDAVNRGVA-VWKGKVYVGVL---- 129 (689)
T ss_dssp CCCEEETTEEEEECGG-------GCEEEEETTTCCEEEEECC--CCCGGGGGGCTTCSCCCCCE-EETTEEEEECT----
T ss_pred ecCEEECCEEEEEcCC-------CeEEEEECCCCceeEEEcC--CCCccccccccccCCCCccE-EECCEEEEEcc----
Confidence 4456789999997652 3799999998888898632 1110 0 0011223 34667877542
Q ss_pred cccCcEEEEecCCCCCceEeccC-CCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEe
Q 042793 306 GLLNDVFVLDLDAKPPTWREISG-LAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREI 379 (545)
Q Consensus 306 ~~~~~~~~yd~~t~~~~W~~~~~-~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 379 (545)
-..++.+|..|....|+.-.. ..........+.++. ++.+|+-.+..+ ...-..++.||..+....|+.-
T Consensus 130 --dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 130 --DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAE-FGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp --TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEE
T ss_pred --CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CCEEEEEeCCCc-cCCCCEEEEEECCCCcEEEEec
Confidence 246899999999888986442 100101111222344 557777322111 1133569999988887789865
No 97
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=96.41 E-value=0.41 Score=45.93 Aligned_cols=111 Identities=8% Similarity=0.087 Sum_probs=50.1
Q ss_pred EEEEcCCCCCCCccCceEE--EeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEE--ecCC
Q 042793 243 VVLFGGEGVNMQPMNDTFV--LDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVL--DLDA 318 (545)
Q Consensus 243 lyv~GG~~~~~~~~~~~~~--~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y--d~~t 318 (545)
.+++|.+.... ...+++ +|..+. +++.+.......|++ .+..-+++.||+.+.... ....+.+| |..+
T Consensus 15 ~~~vg~y~~~~--~~~i~~~~~d~~~g--~~~~~~~~~~~~p~~--l~~spdg~~l~~~~~~~~--~~~~v~~~~~~~~~ 86 (361)
T 3scy_A 15 TMLVGTYTSGN--SKGIYTFRFNEETG--ESLPLSDAEVANPSY--LIPSADGKFVYSVNEFSK--DQAAVSAFAFDKEK 86 (361)
T ss_dssp EEEEEECCSSS--CCEEEEEEEETTTC--CEEEEEEEECSCCCS--EEECTTSSEEEEEECCSS--TTCEEEEEEEETTT
T ss_pred EEEEEeccCCC--CCCEEEEEEeCCCC--CEEEeecccCCCCce--EEECCCCCEEEEEEccCC--CCCcEEEEEEeCCC
Confidence 34456543221 234544 555655 666554221222221 111124556777665321 12345444 5544
Q ss_pred CCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCC
Q 042793 319 KPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSM 371 (545)
Q Consensus 319 ~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 371 (545)
. +.+.+... +..-........+++.+|+.+..+ +.+.+|++..
T Consensus 87 g--~~~~~~~~--~~~~~~p~~~~~dg~~l~~~~~~~------~~v~~~~~~~ 129 (361)
T 3scy_A 87 G--TLHLLNTQ--KTMGADPCYLTTNGKNIVTANYSG------GSITVFPIGQ 129 (361)
T ss_dssp T--EEEEEEEE--ECSSSCEEEEEECSSEEEEEETTT------TEEEEEEBCT
T ss_pred C--cEEEeeEe--ccCCCCcEEEEECCCEEEEEECCC------CEEEEEEeCC
Confidence 5 66655432 111111122233676777765321 3578888753
No 98
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.38 E-value=0.25 Score=48.02 Aligned_cols=183 Identities=13% Similarity=0.110 Sum_probs=92.3
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
..+|+.|+.+ ..+.++|+.+. +-...- .... .-.+++.. +++.||+.|+.+ +.+.++|+.+.
T Consensus 2 ~~l~vs~~~d------~~v~v~d~~~~--~~~~~~--~~~~--~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~ 64 (391)
T 1l0q_A 2 TFAYIANSES------DNISVIDVTSN--KVTATI--PVGS--NPMGAVISPDGTKVYVANAHS-----NDVSIIDTATN 64 (391)
T ss_dssp EEEEEEETTT------TEEEEEETTTT--EEEEEE--ECSS--SEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTT
T ss_pred CEEEEEcCCC------CEEEEEECCCC--eEEEEe--ecCC--CcceEEECCCCCEEEEECCCC-----CeEEEEECCCC
Confidence 3567777653 27899999876 432211 1111 11233322 455677776543 46899999887
Q ss_pred CCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEEC-
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYG- 397 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~- 397 (545)
+....-.. .. .-.+.+.. +++.+|+.+..+ +.+.+||+... +...... ......+++...
T Consensus 65 --~~~~~~~~--~~--~v~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~--~~~~~~~----~~~~~~~~~~s~d 126 (391)
T 1l0q_A 65 --NVIATVPA--GS--SPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSN--TVAGTVK----TGKSPLGLALSPD 126 (391)
T ss_dssp --EEEEEEEC--SS--SEEEEEECTTSSEEEEEETTT------TEEEEEETTTT--EEEEEEE----CSSSEEEEEECTT
T ss_pred --eEEEEEEC--CC--CccceEECCCCCEEEEEECCC------CEEEEEECCCC--eEEEEEe----CCCCcceEEECCC
Confidence 43322211 11 11122222 355566665431 45899996543 3322211 111123343333
Q ss_pred CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCC-EEEEEcCcCCC
Q 042793 398 GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGG-RILIFGGSVAG 476 (545)
Q Consensus 398 ~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~-~l~v~GG~~~~ 476 (545)
++.+|+.++. ...++.+|+. +.+....... ...........++ .+|+.++.+
T Consensus 127 g~~l~~~~~~---------~~~v~~~d~~--~~~~~~~~~~--------------~~~~~~~~~~~dg~~l~~~~~~~-- 179 (391)
T 1l0q_A 127 GKKLYVTNNG---------DKTVSVINTV--TKAVINTVSV--------------GRSPKGIAVTPDGTKVYVANFDS-- 179 (391)
T ss_dssp SSEEEEEETT---------TTEEEEEETT--TTEEEEEEEC--------------CSSEEEEEECTTSSEEEEEETTT--
T ss_pred CCEEEEEeCC---------CCEEEEEECC--CCcEEEEEec--------------CCCcceEEECCCCCEEEEEeCCC--
Confidence 3357677653 3678999988 5554433222 1111222222244 566665532
Q ss_pred CCCCCceEEEcCC
Q 042793 477 LHSATQLYLLDPT 489 (545)
Q Consensus 477 ~~~~~~v~~~d~~ 489 (545)
+.+++||+.
T Consensus 180 ----~~v~~~d~~ 188 (391)
T 1l0q_A 180 ----MSISVIDTV 188 (391)
T ss_dssp ----TEEEEEETT
T ss_pred ----CEEEEEECC
Confidence 569999996
No 99
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.36 E-value=0.18 Score=48.14 Aligned_cols=143 Identities=8% Similarity=0.019 Sum_probs=65.8
Q ss_pred ceEEEeCCCCCCceEEecc-CCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCc
Q 042793 258 DTFVLDLNSSNPEWQHVHV-SSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRS 336 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~-~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~ 336 (545)
.+|.+|..+. +++.+.. .....|. .++.-.++++|+.+... ..+.+++||+.+. +++.+..........
T Consensus 19 ~v~~~d~~tg--~~~~~~~~~~~~~p~---~~a~spdg~l~~~~~~~---~~~~v~~~~~~~g--~~~~~~~~~~~~~~p 88 (347)
T 3hfq_A 19 YQGTLDTTAK--TLTNDGLLAATQNPT---YLALSAKDCLYSVDKED---DEGGIAAWQIDGQ--TAHKLNTVVAPGTPP 88 (347)
T ss_dssp EEEEEETTTT--EEEEEEEEEECSCCC---CEEECTTCEEEEEEEET---TEEEEEEEEEETT--EEEEEEEEEEESCCC
T ss_pred EEEEEcCCCC--eEEEeeeeeccCCcc---eEEEccCCeEEEEEecC---CCceEEEEEecCC--cEEEeeeeecCCCCC
Confidence 3566666665 6655321 1112221 22322344677765321 1246899999877 766554310011111
Q ss_pred cceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEec---C-CCCCCCC----CCcEEEEECCcEEEEEcccC
Q 042793 337 WHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIP---V-TWTPPSR----LGHTLSVYGGRKILMFGGLA 408 (545)
Q Consensus 337 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~---~-~~~p~~r----~~~~~~~~~~~~lyi~GG~~ 408 (545)
.+.+..-+++.+|+.+..+ +.+.+|++... .....+. . ...|.+| ..++++...++++|+.+..
T Consensus 89 ~~~a~spdg~~l~~~~~~~------~~v~v~~~~~~-g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~- 160 (347)
T 3hfq_A 89 AYVAVDEARQLVYSANYHK------GTAEVMKIAAD-GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG- 160 (347)
T ss_dssp SEEEEETTTTEEEEEETTT------TEEEEEEECTT-SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-
T ss_pred EEEEECCCCCEEEEEeCCC------CEEEEEEeCCC-CCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-
Confidence 1122222455677765321 35777876432 1222221 1 1111111 1233444444467765432
Q ss_pred CCCCCccccCcEEEEeCC
Q 042793 409 KSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 409 ~~~~~~~~~~~i~~~d~~ 426 (545)
.+.++.|++.
T Consensus 161 --------~~~v~~~~~~ 170 (347)
T 3hfq_A 161 --------SDKVYVYNVS 170 (347)
T ss_dssp --------TTEEEEEEEC
T ss_pred --------CCEEEEEEEC
Confidence 3567788876
No 100
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.32 E-value=0.0028 Score=49.74 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=47.2
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeE-EEEEEeeecCCcceeEEEEEEEeecCCCCEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEF-QGELLNFRKDGSPLMNRLRLSPIYGDDETITHV 80 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~ 80 (545)
++.++++|+++..+.... .. ....+.+.+..+.+. ..+.... ++|+.+|+.+++.|+.+ +|. .++
T Consensus 42 ~~~~~~~g~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~pi~~-~g~-~~~ 107 (115)
T 3b33_A 42 QSAKRIVEQSLSQLIQHA---------SL--DLALLTQPLQSGQSITDSDVTFV-VDGRPLMLEVTVSPITW-QRQ-LML 107 (115)
T ss_dssp SCHHHHTTCBHHHHCSEE---------EC--CTHHHHHHHHHCCCEEEEEEEEE-ETTEEEEEEEEEEEEEE-TTE-EEE
T ss_pred CCHHHHhCCCHHHHhCcc---------ch--hhHHHHHHHHcCCcccCCceEEe-cCCCEEEEEEEEEEeec-CCc-eEE
Confidence 345667777655433211 11 123345556666554 3455555 89999999999999999 776 678
Q ss_pred EEEeeeee
Q 042793 81 IGIQFFTE 88 (545)
Q Consensus 81 i~~~~Dit 88 (545)
+.+++||+
T Consensus 108 l~~~~Di~ 115 (115)
T 3b33_A 108 LVEMRKID 115 (115)
T ss_dssp EEEEEEC-
T ss_pred EEEEEeCC
Confidence 89999985
No 101
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=96.28 E-value=0.002 Score=51.33 Aligned_cols=71 Identities=7% Similarity=-0.021 Sum_probs=45.1
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCc-ceeEEEEEEEeecCCCCEEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGS-PLMNRLRLSPIYGDDETITHV 80 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~-~~w~~~~~~pi~d~~g~~~~~ 80 (545)
++.++++|+++..+.+++ ......+........+... ..++|. .+|+.+++.|+.++ |...++
T Consensus 54 ~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~p~~~~-~~~~~~ 117 (125)
T 3fc7_A 54 ADPDTLVGQQLSAVMDSE---------AANQRLEAGKSAVENGTAT------RSEDAVGGRHYHNQYIPVDSH-RKSDTF 117 (125)
T ss_dssp SCHHHHTTSBGGGSSCHH---------HHHHHHHHHHHHHHHTSCE------EEEEEETTEEEEEEEEESSTT-TTTTEE
T ss_pred CCHHHHcCccHHHhCCHH---------HHHHHHHHHHHHhcCCCeE------EeEcCCCcEEEEEEEEeEecC-CCeEEE
Confidence 456777888765444211 2222222234455555533 345666 88999999999875 566789
Q ss_pred EEEeeeee
Q 042793 81 IGIQFFTE 88 (545)
Q Consensus 81 i~~~~Dit 88 (545)
+++.+|||
T Consensus 118 ~~~~~DIT 125 (125)
T 3fc7_A 118 QLVSRDIT 125 (125)
T ss_dssp EEEEEECC
T ss_pred EEEEecCC
Confidence 99999997
No 102
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.23 E-value=1.1 Score=47.50 Aligned_cols=127 Identities=16% Similarity=0.136 Sum_probs=71.8
Q ss_pred EcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCC---CC--ccceEEEEcCCEEEEEcCCCCCCCccCcEE
Q 042793 291 VNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPL---PR--SWHSSCTLDGTKLIVSGGCADSGVLLSDTF 365 (545)
Q Consensus 291 ~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~---~r--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 365 (545)
+.+++||+... .+.++.+|..|....|+.-....... .. ......++.++++|+... -..++
T Consensus 68 v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg~l~ 134 (689)
T 1yiq_A 68 VVDGVMYTTGP------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DGRLE 134 (689)
T ss_dssp EETTEEEEECG------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEE
T ss_pred EECCEEEEEcC------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CCEEE
Confidence 34668998754 24699999999988998643221000 00 001122344668887542 13589
Q ss_pred EEecCCCCCceEEecC-CCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEe
Q 042793 366 LLDLSMEKPVWREIPV-TWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCV 435 (545)
Q Consensus 366 ~~d~~~~~~~W~~~~~-~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v 435 (545)
.+|..+.+..|+.-.. ..........+.++.++ .+|+-.+....+ ....++.||..+....|+.-
T Consensus 135 AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~----~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 135 AIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFG----VRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTC----CBCEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccC----CCCEEEEEECCCCcEEEEec
Confidence 9998888888987542 11111111222344555 776633221111 14679999998766779864
No 103
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.22 E-value=0.77 Score=45.26 Aligned_cols=226 Identities=14% Similarity=0.156 Sum_probs=110.0
Q ss_pred CceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCC
Q 042793 257 NDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPR 335 (545)
Q Consensus 257 ~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r 335 (545)
..++++|+... .-+.+... .. . -.+.+.. ++ +.+++++.+.. ...++++|+.+. +...+... +.
T Consensus 159 ~~i~i~d~~g~--~~~~l~~~--~~-~-v~~~~~Spdg-~~la~~s~~~~--~~~i~~~d~~tg--~~~~l~~~--~~-- 223 (415)
T 2hqs_A 159 YELRVSDYDGY--NQFVVHRS--PQ-P-LMSPAWSPDG-SKLAYVTFESG--RSALVIQTLANG--AVRQVASF--PR-- 223 (415)
T ss_dssp EEEEEEETTSC--SCEEEEEE--SS-C-EEEEEECTTS-SEEEEEECTTS--SCEEEEEETTTC--CEEEEECC--SS--
T ss_pred ceEEEEcCCCC--CCEEEeCC--CC-c-ceeeEEcCCC-CEEEEEEecCC--CcEEEEEECCCC--cEEEeecC--CC--
Confidence 47889998754 44443311 11 1 1222222 44 44455544321 257999999988 66555432 11
Q ss_pred ccceEEEE--cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCC
Q 042793 336 SWHSSCTL--DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPL 413 (545)
Q Consensus 336 ~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~ 413 (545)
.. .+..+ +|+.+++.+..+. ...++.+|+.+ .+...+.. .+ ....+.....+++.+++++... +
T Consensus 224 ~~-~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~--~~~~~l~~--~~--~~~~~~~~spdg~~l~~~s~~~-g-- 289 (415)
T 2hqs_A 224 HN-GAPAFSPDGSKLAFALSKTG----SLNLYVMDLAS--GQIRQVTD--GR--SNNTEPTWFPDSQNLAFTSDQA-G-- 289 (415)
T ss_dssp CE-EEEEECTTSSEEEEEECTTS----SCEEEEEETTT--CCEEECCC--CS--SCEEEEEECTTSSEEEEEECTT-S--
T ss_pred cc-cCEEEcCCCCEEEEEEecCC----CceEEEEECCC--CCEEeCcC--CC--CcccceEECCCCCEEEEEECCC-C--
Confidence 11 12223 4545665544321 24689999754 35555542 11 1112233333334444443211 1
Q ss_pred ccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCC
Q 042793 414 RFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKP 493 (545)
Q Consensus 414 ~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~ 493 (545)
...+|.+|+. +.+-..+... ...........+++.+++++.+.+ ...++.+|++ +.
T Consensus 290 ---~~~i~~~d~~--~~~~~~l~~~--------------~~~~~~~~~spdG~~l~~~~~~~g---~~~i~~~d~~--~~ 345 (415)
T 2hqs_A 290 ---RPQVYKVNIN--GGAPQRITWE--------------GSQNQDADVSSDGKFMVMVSSNGG---QQHIAKQDLA--TG 345 (415)
T ss_dssp ---SCEEEEEETT--SSCCEECCCS--------------SSEEEEEEECTTSSEEEEEEECSS---CEEEEEEETT--TC
T ss_pred ---CcEEEEEECC--CCCEEEEecC--------------CCcccCeEECCCCCEEEEEECcCC---ceEEEEEECC--CC
Confidence 3579999988 5444443211 111112222346666666554321 3579999996 44
Q ss_pred ceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeecc
Q 042793 494 TWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 494 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
+...+... . ...+.....+++.+++++.+.. ...+|+++++.
T Consensus 346 ~~~~l~~~---~---~~~~~~~spdg~~l~~~s~~~~---~~~l~~~d~~g 387 (415)
T 2hqs_A 346 GVQVLSST---F---LDETPSLAPNGTMVIYSSSQGM---GSVLNLVSTDG 387 (415)
T ss_dssp CEEECCCS---S---SCEEEEECTTSSEEEEEEEETT---EEEEEEEETTS
T ss_pred CEEEecCC---C---CcCCeEEcCCCCEEEEEEcCCC---ccEEEEEECCC
Confidence 55554221 1 1122333346677777765432 24688887653
No 104
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=96.22 E-value=0.013 Score=55.42 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=59.6
Q ss_pred CCcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCC-eEE-EEEEeeecCCcceeEEEEEEEeecC-CCCE
Q 042793 1 MRDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGI-EFQ-GELLNFRKDGSPLMNRLRLSPIYGD-DETI 77 (545)
Q Consensus 1 ~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~e~~~~~kdG~~~w~~~~~~pi~d~-~g~~ 77 (545)
+|.++|++|+++.. +.||++.....+.+.+.+..++ ... .+++.++|||+.+|++....++.|. .+++
T Consensus 189 GY~peELig~s~~~---------~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwvet~~~~~~np~s~~~ 259 (309)
T 3gdi_A 189 GYLPQDLIETPVLV---------QLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYITLDTSWSSFINPWSRKI 259 (309)
T ss_dssp SCCHHHHTTSBHHH---------HBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEEEEECTTTCCE
T ss_pred CcCHHHHcCCCHHH---------hCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEEEEEEEEEEECCCCCcc
Confidence 36678888876432 2345565666666777777554 355 5889999999999999999999886 4667
Q ss_pred EEEEEEeeeeeecc
Q 042793 78 THVIGIQFFTEANV 91 (545)
Q Consensus 78 ~~~i~~~~Dite~~ 91 (545)
..+||..+-++...
T Consensus 260 e~ii~~h~v~~gp~ 273 (309)
T 3gdi_A 260 SFIIGRHKVRVGPL 273 (309)
T ss_dssp EEEEEEEEEEECCS
T ss_pred cEEEEEEEEccCCC
Confidence 78889988888543
No 105
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.22 E-value=0.4 Score=47.23 Aligned_cols=148 Identities=16% Similarity=0.079 Sum_probs=71.3
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceE-EeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQ-HVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLD 317 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~ 317 (545)
++.+|+.|+.+ ..+.++|+.+. +.. .+. . .. ..-..++.. +++.+|+.++.+ ..+.+||+.
T Consensus 180 ~~~~~~s~~~d------~~v~~~d~~~~--~~~~~~~--~-~~-~~~~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~ 242 (433)
T 3bws_A 180 HNELWVSQMQA------NAVHVFDLKTL--AYKATVD--L-TG-KWSKILLYDPIRDLVYCSNWIS-----EDISVIDRK 242 (433)
T ss_dssp GTEEEEEEGGG------TEEEEEETTTC--CEEEEEE--C-SS-SSEEEEEEETTTTEEEEEETTT-----TEEEEEETT
T ss_pred CCEEEEEECCC------CEEEEEECCCc--eEEEEEc--C-CC-CCeeEEEEcCCCCEEEEEecCC-----CcEEEEECC
Confidence 57788877643 27899998875 322 222 1 11 111222222 455677776533 368999998
Q ss_pred CCCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCC--ccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEE
Q 042793 318 AKPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGV--LLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLS 394 (545)
Q Consensus 318 t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~--~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~ 394 (545)
+. +....-.. .......+.. +++.+++. +...... .-..+++||+... +-..... .+. ....++
T Consensus 243 ~~--~~~~~~~~----~~~~~~~~~~~~g~~l~~~-~~~~~~~~~~dg~i~~~d~~~~--~~~~~~~--~~~--~~~~~~ 309 (433)
T 3bws_A 243 TK--LEIRKTDK----IGLPRGLLLSKDGKELYIA-QFSASNQESGGGRLGIYSMDKE--KLIDTIG--PPG--NKRHIV 309 (433)
T ss_dssp TT--EEEEECCC----CSEEEEEEECTTSSEEEEE-EEESCTTCSCCEEEEEEETTTT--EEEEEEE--EEE--CEEEEE
T ss_pred CC--cEEEEecC----CCCceEEEEcCCCCEEEEE-ECCCCccccCCCeEEEEECCCC--cEEeecc--CCC--CcceEE
Confidence 87 44322211 1111222222 34344443 3221111 1236889996543 3222111 111 111232
Q ss_pred EEC-CcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 395 VYG-GRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 395 ~~~-~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
... ++.+|+.++. ...+..||+.
T Consensus 310 ~~~~g~~l~~~~~~---------~~~v~v~d~~ 333 (433)
T 3bws_A 310 SGNTENKIYVSDMC---------CSKIEVYDLK 333 (433)
T ss_dssp ECSSTTEEEEEETT---------TTEEEEEETT
T ss_pred ECCCCCEEEEEecC---------CCEEEEEECC
Confidence 322 3367777654 3678889987
No 106
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.20 E-value=1.4 Score=46.65 Aligned_cols=126 Identities=19% Similarity=0.212 Sum_probs=71.6
Q ss_pred cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCC---CCc--cceEEEEcCCEEEEEcCCCCCCCccCcEEE
Q 042793 292 NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPL---PRS--WHSSCTLDGTKLIVSGGCADSGVLLSDTFL 366 (545)
Q Consensus 292 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~---~r~--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 366 (545)
.+++||+... .+.++.+|..|....|+.-....... ... ......+.++++|+... -..++.
T Consensus 65 ~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~a 131 (668)
T 1kv9_A 65 HDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DGRLIA 131 (668)
T ss_dssp ETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TSEEEE
T ss_pred ECCEEEEECC------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------CCEEEE
Confidence 3668998754 24699999999888898643321000 000 01112334558887532 135899
Q ss_pred EecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEe
Q 042793 367 LDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCV 435 (545)
Q Consensus 367 ~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v 435 (545)
+|..+.+..|+.-............+.++.++ .+|+-.+....+ ....++.||..+....|+.-
T Consensus 132 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~----~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 132 LDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYG----VRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTC----CBCEEEEEETTTCCEEEEEE
T ss_pred EECCCCCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcC----CCCEEEEEECCCCcEEEEec
Confidence 99888888898754211111111222344555 777643221111 14679999998767789864
No 107
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.18 E-value=0.5 Score=43.00 Aligned_cols=153 Identities=15% Similarity=0.005 Sum_probs=87.9
Q ss_pred eeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEE
Q 042793 234 FSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFV 313 (545)
Q Consensus 234 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 313 (545)
.+....++.||+-.|.... +.+.++|+.+. +-..-. .++..-++..++.. +++||+.... .+.+++
T Consensus 46 qGL~~~~~~LyestG~~g~----S~v~~vD~~Tg--kv~~~~--~l~~~~FgeGit~~-g~~ly~ltw~-----~~~v~v 111 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNGR----SSIRKVDIESG--KTLQQI--ELGKRYFGEGISDW-KDKIVGLTWK-----NGLGFV 111 (262)
T ss_dssp EEEEEETTEEEEEEEETTE----EEEEEECTTTC--CEEEEE--ECCTTCCEEEEEEE-TTEEEEEESS-----SSEEEE
T ss_pred ceEEEECCEEEEECCCCCC----ceEEEEECCCC--cEEEEE--ecCCccceeEEEEe-CCEEEEEEee-----CCEEEE
Confidence 4555568899998886432 37889999987 443211 34433344555544 6699998553 357999
Q ss_pred EecCCCCCceE-eccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCce-EEecCCCCCCCCCC-
Q 042793 314 LDLDAKPPTWR-EISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVW-REIPVTWTPPSRLG- 390 (545)
Q Consensus 314 yd~~t~~~~W~-~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W-~~~~~~~~p~~r~~- 390 (545)
||+.|. +-. .++- +-.+.+ +..+++.+|+.-|. +.++.+|+. +.+- ..+.....+.+...
T Consensus 112 ~D~~t~--~~~~ti~~-----~~eG~g-lt~dg~~L~~SdGs-------~~i~~iDp~--T~~v~~~I~V~~~g~~~~~l 174 (262)
T 3nol_A 112 WNIRNL--RQVRSFNY-----DGEGWG-LTHNDQYLIMSDGT-------PVLRFLDPE--SLTPVRTITVTAHGEELPEL 174 (262)
T ss_dssp EETTTC--CEEEEEEC-----SSCCCC-EEECSSCEEECCSS-------SEEEEECTT--TCSEEEEEECEETTEECCCE
T ss_pred EECccC--cEEEEEEC-----CCCceE-EecCCCEEEEECCC-------CeEEEEcCC--CCeEEEEEEeccCCcccccc
Confidence 999887 322 2322 113323 34567788886542 468999954 3332 33332111111111
Q ss_pred cEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCC
Q 042793 391 HTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSE 427 (545)
Q Consensus 391 ~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~ 427 (545)
--+...++ +||+---. .++|.+.|+.+
T Consensus 175 NELe~~~G-~lyan~w~---------~~~I~vIDp~t 201 (262)
T 3nol_A 175 NELEWVDG-EIFANVWQ---------TNKIVRIDPET 201 (262)
T ss_dssp EEEEEETT-EEEEEETT---------SSEEEEECTTT
T ss_pred ceeEEECC-EEEEEEcc---------CCeEEEEECCC
Confidence 12334455 88864321 58899999983
No 108
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.18 E-value=0.7 Score=43.31 Aligned_cols=227 Identities=13% Similarity=0.015 Sum_probs=105.4
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++++++.|+.+ ..+.++|+.+. +............. -..++...+++.++.|+.+ ..+.+||+.+.
T Consensus 108 ~~~~l~~~~~d------~~i~~~d~~~~--~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~ 173 (337)
T 1gxr_A 108 DGCTLIVGGEA------STLSIWDLAAP--TPRIKAELTSSAPA-CYALAISPDSKVCFSCCSD-----GNIAVWDLHNQ 173 (337)
T ss_dssp TSSEEEEEESS------SEEEEEECCCC----EEEEEEECSSSC-EEEEEECTTSSEEEEEETT-----SCEEEEETTTT
T ss_pred CCCEEEEEcCC------CcEEEEECCCC--CcceeeecccCCCc-eEEEEECCCCCEEEEEeCC-----CcEEEEeCCCC
Confidence 34555666543 26889998876 43222110111111 1222222233566666643 35899999887
Q ss_pred CCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECC
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGG 398 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 398 (545)
+....-.. ... .-..+.+ .++..++.|+.+ ..+.+||+... +-..... .+. .-.+++...+
T Consensus 174 --~~~~~~~~--~~~--~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~--~~~~~~~--~~~--~v~~~~~s~~ 235 (337)
T 1gxr_A 174 --TLVRQFQG--HTD--GASCIDISNDGTKLWTGGLD------NTVRSWDLREG--RQLQQHD--FTS--QIFSLGYCPT 235 (337)
T ss_dssp --EEEEEECC--CSS--CEEEEEECTTSSEEEEEETT------SEEEEEETTTT--EEEEEEE--CSS--CEEEEEECTT
T ss_pred --ceeeeeec--ccC--ceEEEEECCCCCEEEEEecC------CcEEEEECCCC--ceEeeec--CCC--ceEEEEECCC
Confidence 43322111 111 1122223 233556666532 35889996543 2211111 111 1223333344
Q ss_pred cEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCC
Q 042793 399 RKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLH 478 (545)
Q Consensus 399 ~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 478 (545)
+.++++|+. ...+..||+. +.+-..+... ...-.......++++++.|+.+
T Consensus 236 ~~~l~~~~~---------~~~i~~~~~~--~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~d---- 286 (337)
T 1gxr_A 236 GEWLAVGME---------SSNVEVLHVN--KPDKYQLHLH--------------ESCVLSLKFAYCGKWFVSTGKD---- 286 (337)
T ss_dssp SSEEEEEET---------TSCEEEEETT--SSCEEEECCC--------------SSCEEEEEECTTSSEEEEEETT----
T ss_pred CCEEEEEcC---------CCcEEEEECC--CCCeEEEcCC--------------ccceeEEEECCCCCEEEEecCC----
Confidence 466667664 3668888987 4332222211 1111122223356777777743
Q ss_pred CCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeee
Q 042793 479 SATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSL 542 (545)
Q Consensus 479 ~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l 542 (545)
+.+.+||+.+.+...... . ...-.+.....+++.++.|+.++ .+.+|++
T Consensus 287 --g~i~~~~~~~~~~~~~~~-----~--~~~v~~~~~s~~~~~l~~~~~dg------~i~iw~~ 335 (337)
T 1gxr_A 287 --NLLNAWRTPYGASIFQSK-----E--SSSVLSCDISVDDKYIVTGSGDK------KATVYEV 335 (337)
T ss_dssp --SEEEEEETTTCCEEEEEE-----C--SSCEEEEEECTTSCEEEEEETTS------CEEEEEE
T ss_pred --CcEEEEECCCCeEEEEec-----C--CCcEEEEEECCCCCEEEEecCCC------eEEEEEE
Confidence 568999986432221111 1 11112233334667777777653 3555554
No 109
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.12 E-value=0.97 Score=42.90 Aligned_cols=243 Identities=11% Similarity=0.136 Sum_probs=116.6
Q ss_pred cCCcEEeccCCCCCCCCCceeeEEE--CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEc
Q 042793 215 AATWRKLTVGGTVEPSRCNFSACAV--GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVN 292 (545)
Q Consensus 215 ~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~ 292 (545)
...|+.+.. |... ....+.. .+.+|+.|-.. .+++- .....+|+.+... .+.+......+.+.
T Consensus 24 g~~W~~~~~----~~~~-~~~~v~~~~~~~~~~~G~~g-------~i~~s--~DgG~tW~~~~~~-~~~~~~~~~~i~~~ 88 (327)
T 2xbg_A 24 YNPWEAIQL----PTTA-TILDMSFIDRHHGWLVGVNA-------TLMET--RDGGQTWEPRTLV-LDHSDYRFNSVSFQ 88 (327)
T ss_dssp SCCEEEEEC----SCSS-CEEEEEESSSSCEEEEETTT-------EEEEE--SSTTSSCEECCCC-CSCCCCEEEEEEEE
T ss_pred CCCceEeec----CCCC-cEEEEEECCCCcEEEEcCCC-------eEEEe--CCCCCCCeECCCC-CCCCCccEEEEEec
Confidence 467988753 2111 2333333 45788866321 24333 2223489986421 11122222223344
Q ss_pred CCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCC
Q 042793 293 GSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSME 372 (545)
Q Consensus 293 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 372 (545)
++.+|++|.. ..++. ......+|+.+.... +.+-.....+...++.+|+.|.. ..+++-+ ..
T Consensus 89 ~~~~~~~g~~------g~i~~--S~DgG~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~-------g~v~~S~--Dg 150 (327)
T 2xbg_A 89 GNEGWIVGEP------PIMLH--TTDGGQSWSQIPLDP-KLPGSPRLIKALGNGSAEMITNV-------GAIYRTK--DS 150 (327)
T ss_dssp TTEEEEEEET------TEEEE--ESSTTSSCEECCCCT-TCSSCEEEEEEEETTEEEEEETT-------CCEEEES--ST
T ss_pred CCeEEEEECC------CeEEE--ECCCCCCceECcccc-CCCCCeEEEEEECCCCEEEEeCC-------ccEEEEc--CC
Confidence 5688887631 12332 222234999887431 11222233444455688887742 1244433 44
Q ss_pred CCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCC
Q 042793 373 KPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPP 452 (545)
Q Consensus 373 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~ 452 (545)
..+|+.+.. +.+...++++...++.+|++|.. ..+++-+-. ...+|+.+... .
T Consensus 151 G~tW~~~~~---~~~~~~~~~~~~~~~~~~~~g~~----------G~~~~S~d~-gG~tW~~~~~~-------------~ 203 (327)
T 2xbg_A 151 GKNWQALVQ---EAIGVMRNLNRSPSGEYVAVSSR----------GSFYSTWEP-GQTAWEPHNRT-------------T 203 (327)
T ss_dssp TSSEEEEEC---SCCCCEEEEEECTTSCEEEEETT----------SSEEEEECT-TCSSCEEEECC-------------S
T ss_pred CCCCEEeec---CCCcceEEEEEcCCCcEEEEECC----------CcEEEEeCC-CCCceeECCCC-------------C
Confidence 668999874 22223345544445577766531 345544311 14689988532 2
Q ss_pred CCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcC
Q 042793 453 PRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGG 526 (545)
Q Consensus 453 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG 526 (545)
+...+......++.+|+.+.. ..++..+.+ ...+|+.+... ..+.....+......++.+|+.|+
T Consensus 204 ~~~~~~~~~~~~g~~~~~~~~-------G~~~~s~~D-~G~tW~~~~~~-~~~~~~~~~~v~~~~~~~~~~~g~ 268 (327)
T 2xbg_A 204 SRRLHNMGFTPDGRLWMIVNG-------GKIAFSDPD-NSENWGELLSP-LRRNSVGFLDLAYRTPNEVWLAGG 268 (327)
T ss_dssp SSCEEEEEECTTSCEEEEETT-------TEEEEEETT-EEEEECCCBCT-TSSCCSCEEEEEESSSSCEEEEES
T ss_pred CCccceeEECCCCCEEEEeCC-------ceEEEecCC-CCCeeEeccCC-cccCCcceEEEEecCCCEEEEEeC
Confidence 333333333446788877642 235554322 14579887431 112211112222233567888765
No 110
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.08 E-value=0.83 Score=47.46 Aligned_cols=128 Identities=16% Similarity=0.220 Sum_probs=70.7
Q ss_pred cCCEEEEEcCCCCCcccCcEEEEec-CCCCCceEeccCCCC---CCCCcc--ceEEEE--cCCE----EEEEcCCCCCCC
Q 042793 292 NGSHLVVFGGCGRQGLLNDVFVLDL-DAKPPTWREISGLAP---PLPRSW--HSSCTL--DGTK----LIVSGGCADSGV 359 (545)
Q Consensus 292 ~~~~iyv~GG~~~~~~~~~~~~yd~-~t~~~~W~~~~~~~~---~~~r~~--~~~~~~--~~~~----iyv~GG~~~~~~ 359 (545)
.+++||+.+.. .+.++++|. .+....|+.-..... +..++. ....++ .+++ ||+...
T Consensus 61 ~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~------ 129 (599)
T 1w6s_A 61 VDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL------ 129 (599)
T ss_dssp ETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT------
T ss_pred ECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC------
Confidence 36689997652 246999999 888888996443210 001100 111233 3556 777532
Q ss_pred ccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEee
Q 042793 360 LLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVT 436 (545)
Q Consensus 360 ~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~ 436 (545)
-..++.+|..+.+..|+.-.....+......+-++.++ .+|+-.+....+ ....|+.||..+....|+.-.
T Consensus 130 -dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g-~V~vg~~g~e~g----~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 -DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELG----VRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp -TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGT----CCCEEEEEETTTCCEEEEEES
T ss_pred -CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECC-EEEEEecccccC----CCCeEEEEECCCCcEEEEEcC
Confidence 13589999888888898643210000011112234555 776543211111 136799999987677898654
No 111
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=96.05 E-value=0.024 Score=41.68 Aligned_cols=69 Identities=12% Similarity=-0.103 Sum_probs=46.3
Q ss_pred CcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCC-EEEE
Q 042793 2 RDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDET-ITHV 80 (545)
Q Consensus 2 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~-~~~~ 80 (545)
++.++++|+++..+ . ......+.+.+.+..+..+..+ .++|...|+.+++.|+.+++|. +.++
T Consensus 27 ~~~~~~~g~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~g~ 90 (96)
T 3a0s_A 27 LKKENVLGRRLKDL-P-----------DFEEIGSVAESVFENKEPVFLN----FYKFGERYFNIRFSPFRNAKTQLLEGV 90 (96)
T ss_dssp CCHHHHTTSBGGGS-T-----------TCHHHHHHHHHHHHHTCCEEEE----EEEETTEEEEEEEEEEECTTTCCEEEE
T ss_pred CCHHHhcCCCHHHC-c-----------chHHHHHHHHHHhccCCeEEEE----EEcCCcEEEEEEEEEeEcCCCCeeeEE
Confidence 35567778776554 2 3344555666677666655332 2355667999999999998665 6788
Q ss_pred EEEeee
Q 042793 81 IGIQFF 86 (545)
Q Consensus 81 i~~~~D 86 (545)
+++.+|
T Consensus 91 v~~~~D 96 (96)
T 3a0s_A 91 IITIDD 96 (96)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 888876
No 112
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=95.97 E-value=0.91 Score=42.51 Aligned_cols=191 Identities=17% Similarity=0.134 Sum_probs=88.7
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCC--ceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNP--EWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLD 317 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~--~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 317 (545)
++++++.|+ + ..+.++|+.+... ....+.. ......-.+++...+++.++.|+.+ ..+.+||+.
T Consensus 62 ~~~~l~~~~-d------g~i~iw~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~ 127 (337)
T 1gxr_A 62 PTRHVYTGG-K------GCVKVWDISHPGNKSPVSQLDC--LNRDNYIRSCKLLPDGCTLIVGGEA-----STLSIWDLA 127 (337)
T ss_dssp SSSEEEEEC-B------SEEEEEETTSTTCCSCSEEEEC--SCTTSBEEEEEECTTSSEEEEEESS-----SEEEEEECC
T ss_pred CCcEEEEcC-C------CeEEEEECCCCCceeeeecccc--cCCCCcEEEEEEcCCCCEEEEEcCC-----CcEEEEECC
Confidence 455666666 3 2688888876411 1121110 0111111222222333566666543 368999998
Q ss_pred CCCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEE
Q 042793 318 AKPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVY 396 (545)
Q Consensus 318 t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 396 (545)
+. ............. ....+.+ .+++.++.|+.+ ..+.+||+... +....-. . ....-.+++..
T Consensus 128 ~~--~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~--~~~~~~~--~-~~~~i~~~~~~ 192 (337)
T 1gxr_A 128 AP--TPRIKAELTSSAP--ACYALAISPDSKVCFSCCSD------GNIAVWDLHNQ--TLVRQFQ--G-HTDGASCIDIS 192 (337)
T ss_dssp CC----EEEEEEECSSS--CEEEEEECTTSSEEEEEETT------SCEEEEETTTT--EEEEEEC--C-CSSCEEEEEEC
T ss_pred CC--CcceeeecccCCC--ceEEEEECCCCCEEEEEeCC------CcEEEEeCCCC--ceeeeee--c-ccCceEEEEEC
Confidence 87 5433222110111 1122222 234566666542 34889996533 3222211 1 11112233333
Q ss_pred CCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCC
Q 042793 397 GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAG 476 (545)
Q Consensus 397 ~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 476 (545)
.++..++.|+. ...+..||+. +.+-...... +.+ -.+.....+++++++|+.+
T Consensus 193 ~~~~~l~~~~~---------dg~i~~~d~~--~~~~~~~~~~------------~~~--v~~~~~s~~~~~l~~~~~~-- 245 (337)
T 1gxr_A 193 NDGTKLWTGGL---------DNTVRSWDLR--EGRQLQQHDF------------TSQ--IFSLGYCPTGEWLAVGMES-- 245 (337)
T ss_dssp TTSSEEEEEET---------TSEEEEEETT--TTEEEEEEEC------------SSC--EEEEEECTTSSEEEEEETT--
T ss_pred CCCCEEEEEec---------CCcEEEEECC--CCceEeeecC------------CCc--eEEEEECCCCCEEEEEcCC--
Confidence 34456666664 3678889987 4332222111 111 1222223467777777743
Q ss_pred CCCCCceEEEcCCC
Q 042793 477 LHSATQLYLLDPTE 490 (545)
Q Consensus 477 ~~~~~~v~~~d~~~ 490 (545)
..+.+||+.+
T Consensus 246 ----~~i~~~~~~~ 255 (337)
T 1gxr_A 246 ----SNVEVLHVNK 255 (337)
T ss_dssp ----SCEEEEETTS
T ss_pred ----CcEEEEECCC
Confidence 5689999863
No 113
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.95 E-value=0.4 Score=45.22 Aligned_cols=157 Identities=14% Similarity=0.046 Sum_probs=69.9
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEE-EcCCEEEEEcCCCCCcccCcEEEEecC--
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSC-VNGSHLVVFGGCGRQGLLNDVFVLDLD-- 317 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~-- 317 (545)
+.+|+.++.+ +.++++|+... .+.+.+...... ..-..++. -+++.||+.+..+ ..+.+|++.
T Consensus 5 ~~l~~~~~~~------~~v~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~-----~~v~~~~~~~~ 70 (343)
T 1ri6_A 5 QTVYIASPES------QQIHVWNLNHE-GALTLTQVVDVP--GQVQPMVVSPDKRYLYVGVRPE-----FRVLAYRIAPD 70 (343)
T ss_dssp EEEEEEEGGG------TEEEEEEECTT-SCEEEEEEEECS--SCCCCEEECTTSSEEEEEETTT-----TEEEEEEECTT
T ss_pred EEEEEeCCCC------CeEEEEEECCC-CcEEEeeeEecC--CCCceEEECCCCCEEEEeecCC-----CeEEEEEecCC
Confidence 3466664432 26788887532 144433211111 11122222 2455566655421 467777776
Q ss_pred CCCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEE
Q 042793 318 AKPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVY 396 (545)
Q Consensus 318 t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 396 (545)
+. ++..+.....+. .....+.. +++.+|+.+..+ +.+.+||+. .......+.. .+.....++++..
T Consensus 71 ~~--~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~------~~i~~~d~~-~~~~~~~~~~--~~~~~~~~~~~~s 137 (343)
T 1ri6_A 71 DG--ALTFAAESALPG--SLTHISTDHQGQFVFVGSYNA------GNVSVTRLE-DGLPVGVVDV--VEGLDGCHSANIS 137 (343)
T ss_dssp TC--CEEEEEEEECSS--CCSEEEECTTSSEEEEEETTT------TEEEEEEEE-TTEEEEEEEE--ECCCTTBCCCEEC
T ss_pred CC--ceeeccccccCC--CCcEEEEcCCCCEEEEEecCC------CeEEEEECC-CCcccccccc--ccCCCCceEEEEC
Confidence 55 666554321111 11122222 454566655321 347888863 1112222221 1111112333333
Q ss_pred C-CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEE
Q 042793 397 G-GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRC 434 (545)
Q Consensus 397 ~-~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~ 434 (545)
. ++.+|+.+.. ...++.||+.+ ..+...
T Consensus 138 ~dg~~l~~~~~~---------~~~v~~~d~~~-~~~~~~ 166 (343)
T 1ri6_A 138 PDNRTLWVPALK---------QDRICLFTVSD-DGHLVA 166 (343)
T ss_dssp TTSSEEEEEEGG---------GTEEEEEEECT-TSCEEE
T ss_pred CCCCEEEEecCC---------CCEEEEEEecC-CCceee
Confidence 3 3357665522 36688888872 145543
No 114
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=95.94 E-value=0.022 Score=54.53 Aligned_cols=93 Identities=14% Similarity=0.168 Sum_probs=59.5
Q ss_pred CCcceeEEEEEEEeecC---------CCCEEEEEEEeeeeeecccCCCCCCchhHHHhhhhhhhhcccccCCCcccCCCC
Q 042793 57 DGSPLMNRLRLSPIYGD---------DETITHVIGIQFFTEANVDLGPVPGYPVKEFLKSSERQRSFFSGNRTFPIGDRN 127 (545)
Q Consensus 57 dG~~~w~~~~~~pi~d~---------~g~~~~~i~~~~Dite~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 127 (545)
++.++|...+..++.++ .|.....+++..+++...+. +.+. . ...+.. + -...+++|...
T Consensus 99 ~~~p~~l~~~~~~~~~e~~~~~~~~~~g~~~~lv~~a~~i~s~~~~---p~e~----~-~~~~~~-f--i~r~~~dG~~~ 167 (339)
T 3rty_A 99 SYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKV---PDEI----L-SQKSPK-F--AIRHTATGIIS 167 (339)
T ss_dssp CEEEEEEEEEEEECCCC----------CCCEEEEEEEEECCCSCSS---TTBB----C-CSSCCE-E--EEEEETTCBEE
T ss_pred cceeEEEEEEEeccccccccccccccCCceEEEEEEcccCCccccc---cchh----h-ccCCce-E--EEEECCCCeEE
Confidence 34455666666777665 56667788888999854422 0000 0 000000 0 13445667664
Q ss_pred -ccccccCcccc-hhhHHHHHhhccCChhhhhhHH
Q 042793 128 -VCREVCGIFQL-SDEVISLKILSWLSPRDIASVG 160 (545)
Q Consensus 128 -~~~~~~~~~~l-p~~~~~~~~~~~l~~~~~~~~~ 160 (545)
+|++...++|+ |+|+++..++.+++++|+..+.
T Consensus 168 yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~ 202 (339)
T 3rty_A 168 HVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMK 202 (339)
T ss_dssp EECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHH
T ss_pred EcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHH
Confidence 89999999998 9999998899999999987554
No 115
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.92 E-value=1.9 Score=44.65 Aligned_cols=133 Identities=15% Similarity=0.167 Sum_probs=74.4
Q ss_pred eeeEEECCEEEEEcCCCCCCCccCceEEEeC-CCCCCceEEeccCCC---CCCc---cceeEEEE-cCCE----EEEEcC
Q 042793 234 FSACAVGNRVVLFGGEGVNMQPMNDTFVLDL-NSSNPEWQHVHVSSP---PPGR---WGHTLSCV-NGSH----LVVFGG 301 (545)
Q Consensus 234 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~-~t~~~~W~~~~~~~~---~~~r---~~~~~~~~-~~~~----iyv~GG 301 (545)
.+.++.++.||+.... .+.++.+|. .+.+..|+.-..... +.++ ...+.++. .+++ ||+...
T Consensus 56 ~tP~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~ 129 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL 129 (599)
T ss_dssp SCCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred eccEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence 4556789999998752 137999999 888778986321110 0011 11223331 3445 777532
Q ss_pred CCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEec
Q 042793 302 CGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIP 380 (545)
Q Consensus 302 ~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 380 (545)
-..++.+|..|....|+.-............+.++. ++.+|+-.+..+ ......++.||..+.+..|+.-.
T Consensus 130 ------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e-~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 ------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAE-LGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp ------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGG-GTCCCEEEEEETTTCCEEEEEES
T ss_pred ------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccc-cCCCCeEEEEECCCCcEEEEEcC
Confidence 146899999999888985322100000111122334 557776332111 11235689999888888898654
No 116
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.87 E-value=2.2 Score=44.95 Aligned_cols=131 Identities=12% Similarity=0.046 Sum_probs=75.7
Q ss_pred eeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCC------CccceeEEEEcCCEEEEEcCCCCCcc
Q 042793 234 FSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPP------GRWGHTLSCVNGSHLVVFGGCGRQGL 307 (545)
Q Consensus 234 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~------~r~~~~~~~~~~~~iyv~GG~~~~~~ 307 (545)
.+-++.++.||+.... ..++.+|..+.+..|+.-....... .....+.++ .+++||+...
T Consensus 60 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~------ 125 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGTL------ 125 (668)
T ss_dssp CCCEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEECT------
T ss_pred cCCEEECCEEEEECCC-------CeEEEEECCCChhceEECCCCCccccccccccCCccceEE-ECCEEEEEcC------
Confidence 4556789999997652 3799999998878898632111000 000122333 3557877542
Q ss_pred cCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEec
Q 042793 308 LNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIP 380 (545)
Q Consensus 308 ~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 380 (545)
-..++++|..|....|+.-............+.++. ++.+|+-.+..+ ......++.||..+.+..|+.-.
T Consensus 126 dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 126 DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAE-YGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCC-cCCCCEEEEEECCCCcEEEEecc
Confidence 146899999999888986432110111111222334 557776422111 11235699999888888898653
No 117
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=95.86 E-value=0.0088 Score=56.79 Aligned_cols=82 Identities=11% Similarity=0.077 Sum_probs=58.6
Q ss_pred CCcccccccCCCCcccCCCCCCCCCCCCCCHHHHHHHHHHHHc-CCeE-EEEEEeeecCCcceeEEEEEEEeecC-CCCE
Q 042793 1 MRDLGAETNDGIRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEE-GIEF-QGELLNFRKDGSPLMNRLRLSPIYGD-DETI 77 (545)
Q Consensus 1 ~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~e~~~~~kdG~~~w~~~~~~pi~d~-~g~~ 77 (545)
+|.++|++|+++.. +.||++.....+.+.+.+.. +... ..+++.++|||+.+|++.+..+++|. .+++
T Consensus 200 GY~peELig~s~~~---------~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwvet~~~~~~np~s~~~ 270 (320)
T 4dj2_A 200 GYLPQDLLGAPVLL---------FLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVTMDTSWAGFVHPWSRKV 270 (320)
T ss_dssp SCCHHHHTTSBGGG---------GBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEEEEECEEEEEECTTTCSE
T ss_pred CcChHHHcCCcHHH---------hCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEEEEEEEEEEEECCCCCCc
Confidence 36778888886432 23455555555666666664 3445 35889999999999999999999986 4667
Q ss_pred EEEEEEeeeeeecc
Q 042793 78 THVIGIQFFTEANV 91 (545)
Q Consensus 78 ~~~i~~~~Dite~~ 91 (545)
..+||..+-++...
T Consensus 271 e~II~~h~v~~gp~ 284 (320)
T 4dj2_A 271 AFVLGRHKVRTAPL 284 (320)
T ss_dssp EEEEEEEEESSCCS
T ss_pred cEEEEEEEEccCCC
Confidence 78888888777644
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=95.85 E-value=0.96 Score=44.44 Aligned_cols=186 Identities=12% Similarity=0.045 Sum_probs=89.4
Q ss_pred ceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCC-CCCCCCc
Q 042793 258 DTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGL-APPLPRS 336 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~-~~~~~r~ 336 (545)
.+|.+|+.+. .++.+.. .+.+....+++...++++++.++.+ ..+.++|+.+. +....... ....+..
T Consensus 102 ~l~~~d~~~~--~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~-----~~i~~~d~~~g--~~~~~~~~~~~~~~~~ 170 (433)
T 3bws_A 102 KLIALDKEGI--THRFISR--FKTGFQPKSVRFIDNTRLAIPLLED-----EGMDVLDINSG--QTVRLSPPEKYKKKLG 170 (433)
T ss_dssp CEEECCBTTC--SEEEEEE--EECSSCBCCCEESSSSEEEEEBTTS-----SSEEEEETTTC--CEEEECCCHHHHTTCC
T ss_pred EEEEECCCCC--cceEEEE--EcCCCCceEEEEeCCCeEEEEeCCC-----CeEEEEECCCC--eEeeecCcccccccCC
Confidence 6888888655 5554431 1111111233333355777777643 35899999987 44432211 0001111
Q ss_pred cceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEEC-CcEEEEEcccCCCCCCc
Q 042793 337 WHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYG-GRKILMFGGLAKSGPLR 414 (545)
Q Consensus 337 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~lyi~GG~~~~~~~~ 414 (545)
.-.++.+ .++.+++.++.+ ..+.+||+.+.+..+. +.. ....-.+++... ++.+|+.++.
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~l~~~~~~------- 232 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKAT-VDL----TGKWSKILLYDPIRDLVYCSNWI------- 232 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEE-EEC----SSSSEEEEEEETTTTEEEEEETT-------
T ss_pred ceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEE-EcC----CCCCeeEEEEcCCCCEEEEEecC-------
Confidence 1112233 345777777642 3588999754322222 221 111122333333 4466666643
Q ss_pred cccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCC--CCCceEEEcCCC
Q 042793 415 FRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLH--SATQLYLLDPTE 490 (545)
Q Consensus 415 ~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~--~~~~v~~~d~~~ 490 (545)
...++.||+. +.+.... . +....-.......+++.+++++...+.. ....+++||+.+
T Consensus 233 --~~~i~~~d~~--~~~~~~~--~------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~ 292 (433)
T 3bws_A 233 --SEDISVIDRK--TKLEIRK--T------------DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK 292 (433)
T ss_dssp --TTEEEEEETT--TTEEEEE--C------------CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT
T ss_pred --CCcEEEEECC--CCcEEEE--e------------cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC
Confidence 3678899987 5444322 2 1111112222223555555555332211 135799999963
No 119
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=95.78 E-value=0.69 Score=42.73 Aligned_cols=181 Identities=14% Similarity=0.156 Sum_probs=96.9
Q ss_pred CEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCC
Q 042793 294 SHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEK 373 (545)
Q Consensus 294 ~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 373 (545)
+++++.|..+ +.+.++|.++....|+.-... ....|.+....++++++.+. +.++.||. +.+
T Consensus 5 ~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~----~~~~~~~~~~pdG~ilvs~~--------~~V~~~d~-~G~ 66 (276)
T 3no2_A 5 QHLLVGGSGW-----NKIAIINKDTKEIVWEYPLEK----GWECNSVAATKAGEILFSYS--------KGAKMITR-DGR 66 (276)
T ss_dssp CEEEEECTTC-----SEEEEEETTTTEEEEEEECCT----TCCCCEEEECTTSCEEEECB--------SEEEEECT-TSC
T ss_pred CcEEEeeCCC-----CEEEEEECCCCeEEEEeCCCc----cCCCcCeEECCCCCEEEeCC--------CCEEEECC-CCC
Confidence 4677776533 568999998887778754321 11223444444557777321 34889997 456
Q ss_pred CceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCC
Q 042793 374 PVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPP 453 (545)
Q Consensus 374 ~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~ 453 (545)
..|+.-. +.....+++....++.+++..... ...++.+|++. ...|+.-...+ ...+..
T Consensus 67 ~~W~~~~----~~~~~~~~~~~~~dG~~lv~~~~~--------~~~v~~vd~~G-k~l~~~~~~~~--------~~~~~~ 125 (276)
T 3no2_A 67 ELWNIAA----PAGCEMQTARILPDGNALVAWCGH--------PSTILEVNMKG-EVLSKTEFETG--------IERPHA 125 (276)
T ss_dssp EEEEEEC----CTTCEEEEEEECTTSCEEEEEEST--------TEEEEEECTTS-CEEEEEEECCS--------CSSGGG
T ss_pred EEEEEcC----CCCccccccEECCCCCEEEEecCC--------CCEEEEEeCCC-CEEEEEeccCC--------CCcccc
Confidence 6787543 111123445555555666654321 25678888762 33455332110 000111
Q ss_pred CcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCC
Q 042793 454 RLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQT 528 (545)
Q Consensus 454 r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~ 528 (545)
.....+. ..++.+++.... ...+.+||++ .+..|+.-.. ..| +++....++.++|.+..+
T Consensus 126 ~~~~v~~-~~~G~~lv~~~~------~~~v~~~d~~-G~~~w~~~~~--~~~-----~~~~~~~~g~~~v~~~~~ 185 (276)
T 3no2_A 126 QFRQINK-NKKGNYLVPLFA------TSEVREIAPN-GQLLNSVKLS--GTP-----FSSAFLDNGDCLVACGDA 185 (276)
T ss_dssp SCSCCEE-CTTSCEEEEETT------TTEEEEECTT-SCEEEEEECS--SCC-----CEEEECTTSCEEEECBTT
T ss_pred cccCceE-CCCCCEEEEecC------CCEEEEECCC-CCEEEEEECC--CCc-----cceeEcCCCCEEEEeCCC
Confidence 1112233 336666665432 3579999997 5677886531 112 344555567777766543
No 120
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.74 E-value=1.2 Score=48.14 Aligned_cols=215 Identities=8% Similarity=-0.012 Sum_probs=109.0
Q ss_pred ceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCC-CCC-CC
Q 042793 258 DTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLA-PPL-PR 335 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~-~~~-~r 335 (545)
-+++||+.+. +++.+....++. ..-.+++.-.++.|++... +.+++||+.+. +|..+.... ... ..
T Consensus 428 Gl~~~~~~~~--~~~~~~~~~~~~-~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~--~~~~~~~~~~~~~~~~ 495 (781)
T 3v9f_A 428 NISYYNTRLK--KFQIIELEKNEL-LDVRVFYEDKNKKIWIGTH-------AGVFVIDLASK--KVIHHYDTSNSQLLEN 495 (781)
T ss_dssp EEEEECSSSC--EEEECCSTTTCC-CCEEEEEECTTSEEEEEET-------TEEEEEESSSS--SCCEEECTTTSSCSCS
T ss_pred CEEEEcCCCC--cEEEeccCCCCC-CeEEEEEECCCCCEEEEEC-------CceEEEeCCCC--eEEecccCcccccccc
Confidence 6889999877 787654221111 1222333223456776431 35899999988 776654321 011 11
Q ss_pred ccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCC-CCCCCCCCcEEEEECCcEEEEEcccCCCCCCc
Q 042793 336 SWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVT-WTPPSRLGHTLSVYGGRKILMFGGLAKSGPLR 414 (545)
Q Consensus 336 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~ 414 (545)
.-.+.+.-.++.++|-.- . .-+++||. .+.+++..... .++. ..-.+++.-.++.|++...
T Consensus 496 ~i~~i~~d~~g~lWigt~--~-----~Gl~~~~~--~~~~~~~~~~~~~l~~-~~i~~i~~d~~g~lWi~T~-------- 557 (781)
T 3v9f_A 496 FVRSIAQDSEGRFWIGTF--G-----GGVGIYTP--DMQLVRKFNQYEGFCS-NTINQIYRSSKGQMWLATG-------- 557 (781)
T ss_dssp CEEEEEECTTCCEEEEES--S-----SCEEEECT--TCCEEEEECTTTTCSC-SCEEEEEECTTSCEEEEET--------
T ss_pred eeEEEEEcCCCCEEEEEc--C-----CCEEEEeC--CCCeEEEccCCCCCCC-CeeEEEEECCCCCEEEEEC--------
Confidence 111222223446777421 1 12788884 45577776531 2221 1122333333447776422
Q ss_pred cccCcE-EEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCC
Q 042793 415 FRSSDV-FTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKP 493 (545)
Q Consensus 415 ~~~~~i-~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~ 493 (545)
..+ ++||+. +.+++..... ..+|.... .+.+.-.++.|++.+. +.+.+||++ +.
T Consensus 558 ---~Glv~~~d~~--~~~~~~~~~~---------~gl~~~~i-~~i~~d~~g~lW~~t~--------~Gl~~~~~~--~~ 612 (781)
T 3v9f_A 558 ---EGLVCFPSAR--NFDYQVFQRK---------EGLPNTHI-RAISEDKNGNIWASTN--------TGISCYITS--KK 612 (781)
T ss_dssp ---TEEEEESCTT--TCCCEEECGG---------GTCSCCCC-CEEEECSSSCEEEECS--------SCEEEEETT--TT
T ss_pred ---CCceEEECCC--CCcEEEcccc---------CCCCCceE-EEEEECCCCCEEEEcC--------CceEEEECC--CC
Confidence 345 888888 6667665432 11233322 2233333577887642 458999996 55
Q ss_pred ceEEeccCCCCCCCCCC-ceeEEeCCeeEEEEcCCC
Q 042793 494 TWRILNVPGRPPRFAWG-HSTCVVGGTRTIVLGGQT 528 (545)
Q Consensus 494 ~W~~~~~~~~~p~~r~~-~~~~~~~~~~l~i~GG~~ 528 (545)
+++.......++...+. .+++...++.|| |||.+
T Consensus 613 ~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~-~g~~~ 647 (781)
T 3v9f_A 613 CFYTYDHSNNIPQGSFISGCVTKDHNGLIY-FGSIN 647 (781)
T ss_dssp EEEEECGGGTCCSSCEEEEEEEECTTSCEE-EEETT
T ss_pred ceEEecccCCccccccccCceEECCCCEEE-EECCC
Confidence 67776544344443332 233333356554 45543
No 121
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.70 E-value=1.2 Score=42.46 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=14.8
Q ss_pred cCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 292 NGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 292 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
+++.||+....+ ..+.+|++.+.
T Consensus 108 dg~~l~~~~~~~-----~~v~~~~~~~~ 130 (361)
T 3scy_A 108 NGKNIVTANYSG-----GSITVFPIGQD 130 (361)
T ss_dssp CSSEEEEEETTT-----TEEEEEEBCTT
T ss_pred CCCEEEEEECCC-----CEEEEEEeCCC
Confidence 676777765321 45788888654
No 122
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.69 E-value=2.4 Score=43.91 Aligned_cols=81 Identities=19% Similarity=0.343 Sum_probs=46.3
Q ss_pred eeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccc--eeEEEEcC----C-EEEEEcCCCC-Cc
Q 042793 235 SACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWG--HTLSCVNG----S-HLVVFGGCGR-QG 306 (545)
Q Consensus 235 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~--~~~~~~~~----~-~iyv~GG~~~-~~ 306 (545)
+.++.+++||+.... ..++.+|..|....|+.-. ..+...+. .+-++..+ + .||+ |.... ..
T Consensus 112 g~a~~~~~v~~~t~d-------g~l~AlD~~TG~~~W~~~~--~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~ 181 (582)
T 1flg_A 112 GAAIYGDKVFFGTLD-------ASVVALNKNTGKVVWKKKF--ADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFG 181 (582)
T ss_dssp CCEEETTEEEEEETT-------TEEEEEESSSCCEEEEEEC--SCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGC
T ss_pred ccEEECCEEEEEeCC-------CEEEEEECCCCCEEeeecC--CCCCcCcccccCCEEeCCCcCCcEEEEE-eccccccC
Confidence 456678898885421 2799999998877898532 11111111 11122322 1 4544 43221 11
Q ss_pred ccCcEEEEecCCCCCceEe
Q 042793 307 LLNDVFVLDLDAKPPTWRE 325 (545)
Q Consensus 307 ~~~~~~~yd~~t~~~~W~~ 325 (545)
....++.||+.|....|+.
T Consensus 182 ~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 182 VVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp CBCEEEEECTTTCCEEEEE
T ss_pred CCCEEEEEECCCCCEEeec
Confidence 2357999999998778974
No 123
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.66 E-value=0.54 Score=44.76 Aligned_cols=66 Identities=5% Similarity=-0.049 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEE-EcCCEEEEEcCCCCCcccCcEEEEecC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSC-VNGSHLVVFGGCGRQGLLNDVFVLDLD 317 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~ 317 (545)
+++||+.+.... ...+++||+.+. +++.+.........- ..++. -+++.||+.+..+ +.+.+||+.
T Consensus 50 dg~l~~~~~~~~----~~~v~~~~~~~g--~~~~~~~~~~~~~~p-~~~a~spdg~~l~~~~~~~-----~~v~v~~~~ 116 (347)
T 3hfq_A 50 KDCLYSVDKEDD----EGGIAAWQIDGQ--TAHKLNTVVAPGTPP-AYVAVDEARQLVYSANYHK-----GTAEVMKIA 116 (347)
T ss_dssp TCEEEEEEEETT----EEEEEEEEEETT--EEEEEEEEEEESCCC-SEEEEETTTTEEEEEETTT-----TEEEEEEEC
T ss_pred CCeEEEEEecCC----CceEEEEEecCC--cEEEeeeeecCCCCC-EEEEECCCCCEEEEEeCCC-----CEEEEEEeC
Confidence 567777653211 137889998766 665543200011111 12222 3455677765321 357788875
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.63 E-value=0.97 Score=43.67 Aligned_cols=187 Identities=13% Similarity=0.085 Sum_probs=91.5
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
+..||+.|+.+ ..+.++|+.+. +..... ..+. .-..++.. ++++||+.|..+ +.+.+||+.+
T Consensus 43 g~~l~~~~~~d------~~i~v~d~~~~--~~~~~~--~~~~--~v~~~~~spdg~~l~~~~~~~-----~~v~v~d~~~ 105 (391)
T 1l0q_A 43 GTKVYVANAHS------NDVSIIDTATN--NVIATV--PAGS--SPQGVAVSPDGKQVYVTNMAS-----STLSVIDTTS 105 (391)
T ss_dssp SSEEEEEEGGG------TEEEEEETTTT--EEEEEE--ECSS--SEEEEEECTTSSEEEEEETTT-----TEEEEEETTT
T ss_pred CCEEEEECCCC------CeEEEEECCCC--eEEEEE--ECCC--CccceEECCCCCEEEEEECCC-----CEEEEEECCC
Confidence 34677776543 27899999876 433221 1111 11222222 455676665432 4689999998
Q ss_pred CCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEEC
Q 042793 319 KPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYG 397 (545)
Q Consensus 319 ~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 397 (545)
+ +-...... . ....+.+.. +++.+|+.++.+ +.++++|+.+. +....... ......++...
T Consensus 106 ~--~~~~~~~~--~--~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~--~~~~~~~~----~~~~~~~~~~~ 167 (391)
T 1l0q_A 106 N--TVAGTVKT--G--KSPLGLALSPDGKKLYVTNNGD------KTVSVINTVTK--AVINTVSV----GRSPKGIAVTP 167 (391)
T ss_dssp T--EEEEEEEC--S--SSEEEEEECTTSSEEEEEETTT------TEEEEEETTTT--EEEEEEEC----CSSEEEEEECT
T ss_pred C--eEEEEEeC--C--CCcceEEECCCCCEEEEEeCCC------CEEEEEECCCC--cEEEEEec----CCCcceEEECC
Confidence 7 43322211 1 111222222 355677776532 36899996543 33322211 11113333333
Q ss_pred -CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCC
Q 042793 398 -GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAG 476 (545)
Q Consensus 398 -~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 476 (545)
++.+|+.++. ...++.+|+. +.+....... ...........+++.+++++.+.
T Consensus 168 dg~~l~~~~~~---------~~~v~~~d~~--~~~~~~~~~~--------------~~~~~~~~~~~~g~~l~~~~~~~- 221 (391)
T 1l0q_A 168 DGTKVYVANFD---------SMSISVIDTV--TNSVIDTVKV--------------EAAPSGIAVNPEGTKAYVTNVDK- 221 (391)
T ss_dssp TSSEEEEEETT---------TTEEEEEETT--TTEEEEEEEC--------------SSEEEEEEECTTSSEEEEEEECS-
T ss_pred CCCEEEEEeCC---------CCEEEEEECC--CCeEEEEEec--------------CCCccceEECCCCCEEEEEecCc-
Confidence 3367666553 3678899988 5443332211 11111222223455444444210
Q ss_pred CCCCCceEEEcCC
Q 042793 477 LHSATQLYLLDPT 489 (545)
Q Consensus 477 ~~~~~~v~~~d~~ 489 (545)
....+++||+.
T Consensus 222 --~~~~v~~~d~~ 232 (391)
T 1l0q_A 222 --YFNTVSMIDTG 232 (391)
T ss_dssp --SCCEEEEEETT
T ss_pred --CCCcEEEEECC
Confidence 23679999996
No 125
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=95.61 E-value=1.3 Score=40.46 Aligned_cols=207 Identities=12% Similarity=0.039 Sum_probs=108.5
Q ss_pred eeeEEEC-CEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEE
Q 042793 234 FSACAVG-NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVF 312 (545)
Q Consensus 234 ~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 312 (545)
++....+ +.||+-.|... .+.+.++|+.+. +-..-. +++...++..++.. +++||+..-. .+.++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg--~v~~~i--~l~~~~fgeGi~~~-g~~lyv~t~~-----~~~v~ 89 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTG--KVENIH--KMDDSYFGEGLTLL-NEKLYQVVWL-----KNIGF 89 (266)
T ss_dssp EEEEECSTTEEEEEECSTT----TCEEEEEETTTC--CEEEEE--ECCTTCCEEEEEEE-TTEEEEEETT-----CSEEE
T ss_pred ccEEEeCCCeEEEECCCCC----CCEEEEEECCCC--CEEEEE--ecCCCcceEEEEEe-CCEEEEEEec-----CCEEE
Confidence 5666666 79999877422 247999999987 433211 23333344455544 6699998542 35799
Q ss_pred EEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCc-eEEecCCCCCCCC-CC
Q 042793 313 VLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPV-WREIPVTWTPPSR-LG 390 (545)
Q Consensus 313 ~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~-W~~~~~~~~p~~r-~~ 390 (545)
+||+.|. +.+...+.+.+ .+ .....+++++|+..| .+.++++|.. +.+ -..+..+..+.+. .-
T Consensus 90 viD~~t~----~v~~~i~~g~~-~g-~glt~Dg~~l~vs~g-------s~~l~viD~~--t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 90 IYDRRTL----SNIKNFTHQMK-DG-WGLATDGKILYGSDG-------TSILYEIDPH--TFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp EEETTTT----EEEEEEECCSS-SC-CEEEECSSSEEEECS-------SSEEEEECTT--TCCEEEEEECEETTEECCCE
T ss_pred EEECCCC----cEEEEEECCCC-Ce-EEEEECCCEEEEECC-------CCeEEEEECC--CCcEEEEEEECCCCcccccc
Confidence 9999887 22222211111 11 224457778998754 2568999954 333 3333332111111 11
Q ss_pred cEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCC-CceEEeecCCCCCCCCCCCCCCCCCcceEEEEec--CCEE
Q 042793 391 HTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEE-PCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLP--GGRI 467 (545)
Q Consensus 391 ~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~-~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~--~~~l 467 (545)
..+...++ ++|+--.. .++|.+.|+.+.. ..|..+.... + ... ....+ ......++.+. ++++
T Consensus 155 nele~~dg-~lyvn~~~---------~~~V~vID~~tg~V~~~I~~~g~~-~-~~~-~~~~~-~~~v~nGIa~~~~~~~l 220 (266)
T 2iwa_A 155 NELEYING-EVWANIWQ---------TDCIARISAKDGTLLGWILLPNLR-K-KLI-DEGFR-DIDVLNGIAWDQENKRI 220 (266)
T ss_dssp EEEEEETT-EEEEEETT---------SSEEEEEETTTCCEEEEEECHHHH-H-HHH-HTTCT-TCCCEEEEEEETTTTEE
T ss_pred eeEEEECC-EEEEecCC---------CCeEEEEECCCCcEEEEEECCCcc-c-ccc-ccccc-ccCceEEEEEcCCCCEE
Confidence 23334454 88865332 4899999998321 1233332110 0 000 00001 11112333332 4679
Q ss_pred EEEcCcCCCCCCCCceEEEcCC
Q 042793 468 LIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 468 ~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
||-|+. .+.++..++.
T Consensus 221 fVTgk~------~~~v~~i~l~ 236 (266)
T 2iwa_A 221 FVTGKL------WPKLFEIKLH 236 (266)
T ss_dssp EEEETT------CSEEEEEEEE
T ss_pred EEECCC------CCeEEEEEEe
Confidence 998874 4778888875
No 126
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.47 E-value=0.5 Score=43.03 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=64.6
Q ss_pred eEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccC
Q 042793 339 SSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSS 418 (545)
Q Consensus 339 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~ 418 (545)
....+.++.+|+..|... .+.++|+.+.+..-+. ++..-.+.+++..++ +||+.... .+
T Consensus 58 qGL~~~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~-----l~~~~FgeGit~~g~-~Ly~ltw~---------~~ 116 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQG------TLRQLSLESAQPVWME-----RLGNIFAEGLASDGE-RLYQLTWT---------EG 116 (268)
T ss_dssp EEEEEETTEEEEEETTTT------EEEECCSSCSSCSEEE-----ECTTCCEEEEEECSS-CEEEEESS---------SC
T ss_pred ceEEEECCEEEEEcCCCC------EEEEEECCCCcEEeEE-----CCCCcceeEEEEeCC-EEEEEEcc---------CC
Confidence 344556779999988632 3888997655333322 222334455655555 99998553 48
Q ss_pred cEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCC
Q 042793 419 DVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTE 490 (545)
Q Consensus 419 ~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~ 490 (545)
.+++||+. +.+ .+... +.+-.+ -+++..+++||+.-| .+.++.+|+++
T Consensus 117 ~v~V~D~~--Tl~--~~~ti------------~~~~eG-wGLt~Dg~~L~vSdG-------s~~l~~iDp~T 164 (268)
T 3nok_A 117 LLFTWSGM--PPQ--RERTT------------RYSGEG-WGLCYWNGKLVRSDG-------GTMLTFHEPDG 164 (268)
T ss_dssp EEEEEETT--TTE--EEEEE------------ECSSCC-CCEEEETTEEEEECS-------SSEEEEECTTT
T ss_pred EEEEEECC--cCc--EEEEE------------eCCCce-eEEecCCCEEEEECC-------CCEEEEEcCCC
Confidence 89999988 433 33322 111112 233344778888755 36899999974
No 127
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=95.47 E-value=1.4 Score=42.02 Aligned_cols=205 Identities=11% Similarity=0.095 Sum_probs=97.8
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcC---CEEEEEcCCCCCcccCcEEEEecC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNG---SHLVVFGGCGRQGLLNDVFVLDLD 317 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~---~~iyv~GG~~~~~~~~~~~~yd~~ 317 (545)
+.+++.|+.+. .+.++|+.+. +|..+.. .........+..+.. ..+++.|+.+ ..+.+||+.
T Consensus 69 ~~~l~s~~~dg------~v~iwd~~~~--~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~ 133 (379)
T 3jrp_A 69 GTILASCSYDG------KVLIWKEENG--RWSQIAV--HAVHSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFK 133 (379)
T ss_dssp CSEEEEEETTS------CEEEEEEETT--EEEEEEE--ECCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECC
T ss_pred CCEEEEeccCC------EEEEEEcCCC--ceeEeee--ecCCCcceEEEEeCCCCCCCEEEEecCC-----CcEEEEecC
Confidence 55666666542 6888888877 7655432 111112223333321 3466666643 357888887
Q ss_pred CCCCceE-eccCCCCCCCCccceEEEEc--------------CCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCC
Q 042793 318 AKPPTWR-EISGLAPPLPRSWHSSCTLD--------------GTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVT 382 (545)
Q Consensus 318 t~~~~W~-~~~~~~~~~~r~~~~~~~~~--------------~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~ 382 (545)
+....-. .+... .. .-.++.+. ++.+++.|+.+ ..+.+||+......+..+..
T Consensus 134 ~~~~~~~~~~~~~--~~---~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~- 201 (379)
T 3jrp_A 134 ENGTTSPIIIDAH--AI---GVNSASWAPATIEEDGEHNGTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLEST- 201 (379)
T ss_dssp TTSCCCEEEEECC--TT---CEEEEEECCCC----------CTTCEEEEEETT------SCEEEEEEETTTTEEEEEEE-
T ss_pred CCCceeeEEecCC--CC---ceEEEEEcCccccccccccCCCCCCEEEEEeCC------CeEEEEEecCCCcceeeEEE-
Confidence 6511000 11110 11 11122221 24666666643 24788887655555654432
Q ss_pred CCCC-CCCCcEEEEECC---cEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceE
Q 042793 383 WTPP-SRLGHTLSVYGG---RKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHV 458 (545)
Q Consensus 383 ~~p~-~r~~~~~~~~~~---~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~ 458 (545)
... ...-.+++...+ +.+++.|+.+ ..+..||+......+...... .......-.+
T Consensus 202 -~~~h~~~v~~~~~sp~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~----------~~~~~~~v~~ 261 (379)
T 3jrp_A 202 -LEGHSDWVRDVAWSPTVLLRSYLASVSQD---------RTCIIWTQDNEQGPWKKTLLK----------EEKFPDVLWR 261 (379)
T ss_dssp -ECCCSSCEEEEEECCCCSSSEEEEEEETT---------SCEEEEEESSTTSCCEEEESS----------SSCCSSCEEE
T ss_pred -EecccCcEeEEEECCCCCCCCeEEEEeCC---------CEEEEEeCCCCCccceeeeec----------cccCCCcEEE
Confidence 111 111223333334 4777777753 456677776323333322211 0011111112
Q ss_pred EEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEec
Q 042793 459 AVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILN 499 (545)
Q Consensus 459 ~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~ 499 (545)
.....++++++.|+.+ ..+.+||+.. ...|..+.
T Consensus 262 ~~~s~~g~~l~~~~~d------g~i~iw~~~~-~~~~~~~~ 295 (379)
T 3jrp_A 262 ASWSLSGNVLALSGGD------NKVTLWKENL-EGKWEPAG 295 (379)
T ss_dssp EEECSSSCCEEEEESS------SSEEEEEEEE-TTEEEEEE
T ss_pred EEEcCCCCEEEEecCC------CcEEEEeCCC-CCcccccc
Confidence 2223366777777753 4577777652 35677664
No 128
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.41 E-value=2.1 Score=41.56 Aligned_cols=133 Identities=12% Similarity=0.119 Sum_probs=66.7
Q ss_pred ceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceE-eccCCCCCCCCc
Q 042793 258 DTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWR-EISGLAPPLPRS 336 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~-~~~~~~~~~~r~ 336 (545)
.++++|..+. +........ ....-.+++...++..+++|+.+ ..+.+||+.+. .-. .+.. . ..
T Consensus 114 ~v~lw~~~~~--~~~~~~~~~--~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~--~~~~~~~~---~--~~ 177 (401)
T 4aez_A 114 NVYVWNADSG--SVSALAETD--ESTYVASVKWSHDGSFLSVGLGN-----GLVDIYDVESQ--TKLRTMAG---H--QA 177 (401)
T ss_dssp EEEEEETTTC--CEEEEEECC--TTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTC--CEEEEECC---C--SS
T ss_pred eEEEeeCCCC--cEeEeeecC--CCCCEEEEEECCCCCEEEEECCC-----CeEEEEECcCC--eEEEEecC---C--CC
Confidence 6888998876 554332111 11111222222233566666643 36889999877 322 2221 1 11
Q ss_pred cceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccc
Q 042793 337 WHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFR 416 (545)
Q Consensus 337 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~ 416 (545)
.-.++.+++ .+++.|+.+ ..+..+|+......-..+.. .. ..-.++....++.+++.|+.
T Consensus 178 ~v~~~~~~~-~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~--~~--~~v~~~~~~~~~~~l~s~~~--------- 237 (401)
T 4aez_A 178 RVGCLSWNR-HVLSSGSRS------GAIHHHDVRIANHQIGTLQG--HS--SEVCGLAWRSDGLQLASGGN--------- 237 (401)
T ss_dssp CEEEEEEET-TEEEEEETT------SEEEEEETTSSSCEEEEEEC--CS--SCEEEEEECTTSSEEEEEET---------
T ss_pred ceEEEEECC-CEEEEEcCC------CCEEEEecccCcceeeEEcC--CC--CCeeEEEEcCCCCEEEEEeC---------
Confidence 222344455 566666642 35888997633222223221 11 11123333334467777765
Q ss_pred cCcEEEEeCC
Q 042793 417 SSDVFTMDLS 426 (545)
Q Consensus 417 ~~~i~~~d~~ 426 (545)
...+..||+.
T Consensus 238 d~~v~iwd~~ 247 (401)
T 4aez_A 238 DNVVQIWDAR 247 (401)
T ss_dssp TSCEEEEETT
T ss_pred CCeEEEccCC
Confidence 3678888987
No 129
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=95.14 E-value=1.8 Score=39.14 Aligned_cols=229 Identities=10% Similarity=-0.011 Sum_probs=107.8
Q ss_pred CCEEEE-EcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVL-FGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv-~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
+++||+ ..... ..++++|..+. ....+.......+ +.++.-.++++|+... . +.+.+||+.+
T Consensus 34 ~g~l~v~~~~~~------~~i~~~~~~~~--~~~~~~~~~~~~p---~~i~~~~~g~l~v~~~-~-----~~i~~~d~~~ 96 (270)
T 1rwi_B 34 AGNVYVTSEGMY------GRVVKLATGST--GTTVLPFNGLYQP---QGLAVDGAGTVYVTDF-N-----NRVVTLAAGS 96 (270)
T ss_dssp TCCEEEEECSSS------CEEEEECC-------EECCCCSCCSC---CCEEECTTCCEEEEET-T-----TEEEEECTTC
T ss_pred CCCEEEEccCCC------CcEEEecCCCc--ccceEeeCCcCCc---ceeEECCCCCEEEEcC-C-----CEEEEEeCCC
Confidence 457888 53321 36888988765 4333321121122 3333333446888754 1 3689999887
Q ss_pred CCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECC
Q 042793 319 KPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGG 398 (545)
Q Consensus 319 ~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 398 (545)
. ....+... . ...-+..+.-.++++|+.... .+.+++++. .+........... ..-.+++...+
T Consensus 97 ~--~~~~~~~~--~-~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~--~~~~~~~~~~~~~---~~p~~i~~~~~ 160 (270)
T 1rwi_B 97 N--NQTVLPFD--G-LNYPEGLAVDTQGAVYVADRG------NNRVVKLAA--GSKTQTVLPFTGL---NDPDGVAVDNS 160 (270)
T ss_dssp S--CCEECCCC--S-CSSEEEEEECTTCCEEEEEGG------GTEEEEECT--TCCSCEECCCCSC---CSCCCEEECTT
T ss_pred c--eEeeeecC--C-cCCCcceEECCCCCEEEEECC------CCEEEEEEC--CCceeEeeccccC---CCceeEEEeCC
Confidence 6 44433321 1 011122222224478886432 135788873 3333333221111 11233444444
Q ss_pred cEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEe-cCCEEEEEcCcCCCC
Q 042793 399 RKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSL-PGGRILIFGGSVAGL 477 (545)
Q Consensus 399 ~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~ 477 (545)
+++|+.... ...|++||+. +..-...... .. .....+.+ .++.+|+....
T Consensus 161 g~l~v~~~~---------~~~i~~~~~~--~~~~~~~~~~------------~~--~~p~~i~~d~~g~l~v~~~~---- 211 (270)
T 1rwi_B 161 GNVYVTDTD---------NNRVVKLEAE--SNNQVVLPFT------------DI--TAPWGIAVDEAGTVYVTEHN---- 211 (270)
T ss_dssp CCEEEEEGG---------GTEEEEECTT--TCCEEECCCS------------SC--CSEEEEEECTTCCEEEEETT----
T ss_pred CCEEEEECC---------CCEEEEEecC--CCceEeeccc------------CC--CCceEEEECCCCCEEEEECC----
Confidence 478887543 3678999987 4332222111 11 12233444 34678887542
Q ss_pred CCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeecc
Q 042793 478 HSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 478 ~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
.+.+++||+.. ..-..... ... ..-.+.++..++.||+....+ +.|.+|++.+
T Consensus 212 --~~~v~~~~~~~--~~~~~~~~-~~~---~~p~~i~~~~~g~l~v~~~~~------~~v~~~~~~~ 264 (270)
T 1rwi_B 212 --TNQVVKLLAGS--TTSTVLPF-TGL---NTPLAVAVDSDRTVYVADRGN------DRVVKLTSLE 264 (270)
T ss_dssp --TSCEEEECTTC--SCCEECCC-CSC---SCEEEEEECTTCCEEEEEGGG------TEEEEECCCG
T ss_pred --CCcEEEEcCCC--Ccceeecc-CCC---CCceeEEECCCCCEEEEECCC------CEEEEEcCCC
Confidence 25699999863 22112211 111 111233333456788865433 4477777654
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.13 E-value=2.2 Score=39.97 Aligned_cols=148 Identities=9% Similarity=-0.025 Sum_probs=72.3
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEE-EcCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSC-VNGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
.+.+|+.+..+ +.+.++|+.+. +...... .+. ....++. -+++.+|+.+..+ +.++++|+.+
T Consensus 9 ~~~~~v~~~~~------~~v~~~d~~~~--~~~~~~~--~~~--~~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~ 71 (331)
T 3u4y_A 9 SNFGIVVEQHL------RRISFFSTDTL--EILNQIT--LGY--DFVDTAITSDCSNVVVTSDFC-----QTLVQIETQL 71 (331)
T ss_dssp CCEEEEEEGGG------TEEEEEETTTC--CEEEEEE--CCC--CEEEEEECSSSCEEEEEESTT-----CEEEEEECSS
T ss_pred CCEEEEEecCC------CeEEEEeCccc--ceeeeEE--ccC--CcceEEEcCCCCEEEEEeCCC-----CeEEEEECCC
Confidence 45677776543 37999999887 6544321 111 1112222 2455677776532 3789999988
Q ss_pred CCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECC
Q 042793 319 KPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGG 398 (545)
Q Consensus 319 ~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 398 (545)
....-..+... ..+... .+..-+++.+| .+... . ....++++|+... +..... +.....+.++...+
T Consensus 72 ~~~~~~~~~~~--~~~~~~-~~~s~dg~~l~-~~~~~-~--~~~~i~v~d~~~~--~~~~~~----~~~~~~~~~~~spd 138 (331)
T 3u4y_A 72 EPPKVVAIQEG--QSSMAD-VDITPDDQFAV-TVTGL-N--HPFNMQSYSFLKN--KFISTI----PIPYDAVGIAISPN 138 (331)
T ss_dssp SSCEEEEEEEC--SSCCCC-EEECTTSSEEE-ECCCS-S--SSCEEEEEETTTT--EEEEEE----ECCTTEEEEEECTT
T ss_pred CceeEEecccC--CCCccc-eEECCCCCEEE-EecCC-C--CcccEEEEECCCC--CeEEEE----ECCCCccceEECCC
Confidence 83212233322 122210 12222455666 33221 1 1126899996533 332221 11112244544444
Q ss_pred c-EEEEEcccCCCCCCccccCc-EEEEeCC
Q 042793 399 R-KILMFGGLAKSGPLRFRSSD-VFTMDLS 426 (545)
Q Consensus 399 ~-~lyi~GG~~~~~~~~~~~~~-i~~~d~~ 426 (545)
+ .+|+.+.. ... ++.|++.
T Consensus 139 g~~l~~~~~~---------~~~~i~~~~~~ 159 (331)
T 3u4y_A 139 GNGLILIDRS---------SANTVRRFKID 159 (331)
T ss_dssp SSCEEEEEET---------TTTEEEEEEEC
T ss_pred CCEEEEEecC---------CCceEEEEEEC
Confidence 3 47776543 244 6666665
No 131
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.10 E-value=2.3 Score=40.19 Aligned_cols=243 Identities=11% Similarity=0.140 Sum_probs=116.4
Q ss_pred CCcEEeccCCCCCCCCCceeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCC-CCCCccceeEEEEcCC
Q 042793 216 ATWRKLTVGGTVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSS-PPPGRWGHTLSCVNGS 294 (545)
Q Consensus 216 ~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~-~~~~r~~~~~~~~~~~ 294 (545)
..|+.+......+ .....++...++.+|+.|.. ..+++ . .....+|+.+.... +|. ..+.++...++
T Consensus 66 ~tW~~~~~~~~~~-~~~~~~i~~~~~~~~~~g~~-------g~i~~-S-~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~ 133 (327)
T 2xbg_A 66 QTWEPRTLVLDHS-DYRFNSVSFQGNEGWIVGEP-------PIMLH-T-TDGGQSWSQIPLDPKLPG--SPRLIKALGNG 133 (327)
T ss_dssp SSCEECCCCCSCC-CCEEEEEEEETTEEEEEEET-------TEEEE-E-SSTTSSCEECCCCTTCSS--CEEEEEEEETT
T ss_pred CCCeECCCCCCCC-CccEEEEEecCCeEEEEECC-------CeEEE-E-CCCCCCceECccccCCCC--CeEEEEEECCC
Confidence 4788775321111 11223444456788887631 13333 2 22234899875321 221 22344445566
Q ss_pred EEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCC
Q 042793 295 HLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKP 374 (545)
Q Consensus 295 ~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~ 374 (545)
.+|+.|... .++. ......+|+.+... .+...+..+...++.+|++|-. ..+++-+ +....
T Consensus 134 ~~~~~~~~g------~v~~--S~DgG~tW~~~~~~---~~~~~~~~~~~~~~~~~~~g~~-------G~~~~S~-d~gG~ 194 (327)
T 2xbg_A 134 SAEMITNVG------AIYR--TKDSGKNWQALVQE---AIGVMRNLNRSPSGEYVAVSSR-------GSFYSTW-EPGQT 194 (327)
T ss_dssp EEEEEETTC------CEEE--ESSTTSSEEEEECS---CCCCEEEEEECTTSCEEEEETT-------SSEEEEE-CTTCS
T ss_pred CEEEEeCCc------cEEE--EcCCCCCCEEeecC---CCcceEEEEEcCCCcEEEEECC-------CcEEEEe-CCCCC
Confidence 888877421 2333 22223489988753 2223344433344567766532 1245443 12246
Q ss_pred ceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCC
Q 042793 375 VWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPR 454 (545)
Q Consensus 375 ~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r 454 (545)
+|+.+.. +.+...+.++...++.+|+.+.. ..++..+.+ ...+|+.+... ..+..
T Consensus 195 tW~~~~~---~~~~~~~~~~~~~~g~~~~~~~~----------G~~~~s~~D-~G~tW~~~~~~----------~~~~~- 249 (327)
T 2xbg_A 195 AWEPHNR---TTSRRLHNMGFTPDGRLWMIVNG----------GKIAFSDPD-NSENWGELLSP----------LRRNS- 249 (327)
T ss_dssp SCEEEEC---CSSSCEEEEEECTTSCEEEEETT----------TEEEEEETT-EEEEECCCBCT----------TSSCC-
T ss_pred ceeECCC---CCCCccceeEECCCCCEEEEeCC----------ceEEEecCC-CCCeeEeccCC----------cccCC-
Confidence 8998853 33344455554455578877642 234444221 14579876421 01111
Q ss_pred cceEEEEe-cCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEc
Q 042793 455 LDHVAVSL-PGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLG 525 (545)
Q Consensus 455 ~~~~~~~~-~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~G 525 (545)
....++.. .++.+|+.|+. ..+++- .+ ...+|+.+......|. ..+......++.+++.|
T Consensus 250 ~~~~~v~~~~~~~~~~~g~~-------g~i~~S-~D-gG~tW~~~~~~~~~~~--~~~~v~~~~~~~~~~~G 310 (327)
T 2xbg_A 250 VGFLDLAYRTPNEVWLAGGA-------GALLCS-QD-GGQTWQQDVDVKKVPS--NFYKILFFSPDQGFILG 310 (327)
T ss_dssp SCEEEEEESSSSCEEEEEST-------TCEEEE-SS-TTSSCEECGGGTTSSS--CCCEEEEEETTEEEEEC
T ss_pred cceEEEEecCCCEEEEEeCC-------CeEEEe-CC-CCcccEEcCccCCCCC--CeEEEEEECCCceEEEc
Confidence 22233333 35678888762 234332 22 2568999864222221 22334344456666555
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=95.02 E-value=2.4 Score=39.96 Aligned_cols=154 Identities=14% Similarity=0.070 Sum_probs=74.4
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEE-eccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQH-VHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLD 317 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~-~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~ 317 (545)
++.+|+.............++++|+.+. +... +.... ..+.++.. +++++|+.++.+ +.++++|+.
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~~~~-----~~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~ 119 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTL--EVTQAIHNDL-----KPFGATINNTTQTLWFGNTVN-----SAVTAIDAK 119 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTC--CEEEEEEESS-----CCCSEEEETTTTEEEEEETTT-----TEEEEEETT
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCC--eEEEEEecCC-----CcceEEECCCCCEEEEEecCC-----CEEEEEeCC
Confidence 3578776633211112347999999876 3322 22111 11233333 455688876532 378999998
Q ss_pred CCCCceEeccCCCCCC-----CCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCc
Q 042793 318 AKPPTWREISGLAPPL-----PRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGH 391 (545)
Q Consensus 318 t~~~~W~~~~~~~~~~-----~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~ 391 (545)
+....+. +....... +...+..+.. +++.+|+.+... -..++++|+.+.+..+ .+.. .....+
T Consensus 120 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~-~~~~----~~~~~~ 188 (353)
T 3vgz_A 120 TGEVKGR-LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKT-AIQN----TGKMST 188 (353)
T ss_dssp TCCEEEE-EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEE-EECC----CCTTCC
T ss_pred CCeeEEE-EecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEE-EecC----CCCccc
Confidence 8732232 22110011 1111222222 456788776221 1358999965332122 2221 111112
Q ss_pred EEEEE-CCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 392 TLSVY-GGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 392 ~~~~~-~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.++.. +++.+|+... .+.++.+|+.
T Consensus 189 ~~~~s~dg~~l~~~~~----------~~~i~~~d~~ 214 (353)
T 3vgz_A 189 GLALDSEGKRLYTTNA----------DGELITIDTA 214 (353)
T ss_dssp CCEEETTTTEEEEECT----------TSEEEEEETT
T ss_pred eEEECCCCCEEEEEcC----------CCeEEEEECC
Confidence 23333 3446776543 2678899988
No 133
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.02 E-value=3.8 Score=42.31 Aligned_cols=129 Identities=13% Similarity=0.126 Sum_probs=72.5
Q ss_pred eeeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCC-CCcc---ceeEEEEcCCEEEEEcCCCCCcccC
Q 042793 234 FSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPP-PGRW---GHTLSCVNGSHLVVFGGCGRQGLLN 309 (545)
Q Consensus 234 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~-~~r~---~~~~~~~~~~~iyv~GG~~~~~~~~ 309 (545)
.+.++.++.||+.... +.++.+|..|.+..|+.-...+.. .+.+ ..+.+ +.+++||+... -.
T Consensus 62 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a-~~~~~v~~~t~------dg 127 (582)
T 1flg_A 62 SQAIVSDGVIYVTASY-------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAA-IYGDKVFFGTL------DA 127 (582)
T ss_dssp CCCEEETTEEEEEETT-------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCE-EETTEEEEEET------TT
T ss_pred eccEEECCEEEEEcCC-------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccE-EECCEEEEEeC------CC
Confidence 3456789999998753 149999999887789864311110 0111 12233 34668887532 24
Q ss_pred cEEEEecCCCCCceEeccCCCCCCCC--ccceEEEEcC----C-EEEEEcCCCCCCCccCcEEEEecCCCCCceEEe
Q 042793 310 DVFVLDLDAKPPTWREISGLAPPLPR--SWHSSCTLDG----T-KLIVSGGCADSGVLLSDTFLLDLSMEKPVWREI 379 (545)
Q Consensus 310 ~~~~yd~~t~~~~W~~~~~~~~~~~r--~~~~~~~~~~----~-~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 379 (545)
.++.+|..|....|+.-... +... ...+.++..+ . .+|+ |...........++.||..+.+..|+.-
T Consensus 128 ~l~AlD~~TG~~~W~~~~~~--~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 128 SVVALNKNTGKVVWKKKFAD--HGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp EEEEEESSSCCEEEEEECSC--GGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred EEEEEECCCCCEEeeecCCC--CCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeecC
Confidence 68999999998889853321 1111 1112223322 1 4444 4321111123568999988888889753
No 134
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=94.99 E-value=4.3 Score=43.76 Aligned_cols=212 Identities=8% Similarity=0.044 Sum_probs=107.5
Q ss_pred ceEEEeCCCCCCceEEeccCC--CCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCC
Q 042793 258 DTFVLDLNSSNPEWQHVHVSS--PPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPR 335 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~~~--~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r 335 (545)
-+++||+.+. +++.+.... ++.. .-.+++.-.++.|++... +.+++||+.+. +|+.+.....+...
T Consensus 428 Gl~~~d~~~~--~~~~~~~~~~~l~~~-~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~--~~~~~~~~~~~~~~ 495 (795)
T 4a2l_A 428 GLSILHRNSG--QVENFNQRNSQLVNE-NVYAILPDGEGNLWLGTL-------SALVRFNPEQR--SFTTIEKEKDGTPV 495 (795)
T ss_dssp EEEEEETTTC--CEEEECTTTSCCSCS-CEEEEEECSSSCEEEEES-------SCEEEEETTTT--EEEECCBCTTCCBC
T ss_pred ceeEEeCCCC--cEEEeecCCCCcCCC-eeEEEEECCCCCEEEEec-------CceeEEeCCCC--eEEEcccccccccc
Confidence 6899999887 777654211 1111 112222222346766432 35899999998 88877532111111
Q ss_pred ---ccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecC----CCCCCCCCCcEEEEECCcEEEEEcccC
Q 042793 336 ---SWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPV----TWTPPSRLGHTLSVYGGRKILMFGGLA 408 (545)
Q Consensus 336 ---~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~----~~~p~~r~~~~~~~~~~~~lyi~GG~~ 408 (545)
.-.+.+.-.++.+|+-.. .-+++||.. +.++ .... ..++ ...-.+++.-.++.|++-..
T Consensus 496 ~~~~i~~i~~d~~g~lWigt~--------~Gl~~~~~~--~~~~-~~~~~~~~~~l~-~~~i~~i~~d~~g~lWigT~-- 561 (795)
T 4a2l_A 496 VSKQITTLFRDSHKRLWIGGE--------EGLSVFKQE--GLDI-QKASILPVSNVT-KLFTNCIYEASNGIIWVGTR-- 561 (795)
T ss_dssp CCCCEEEEEECTTCCEEEEES--------SCEEEEEEE--TTEE-EECCCSCSCGGG-GSCEEEEEECTTSCEEEEES--
T ss_pred CCceEEEEEECCCCCEEEEeC--------CceEEEeCC--CCeE-EEecCCCCCCCC-CCeeEEEEECCCCCEEEEeC--
Confidence 111222223446777432 237888854 3466 3321 0111 11122333333447776421
Q ss_pred CCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEe-cCCEEEEEcCcCCCCCCCCceEEEc
Q 042793 409 KSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSL-PGGRILIFGGSVAGLHSATQLYLLD 487 (545)
Q Consensus 409 ~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~v~~~d 487 (545)
..+++||+. +.+++..... ..+|.... .++.. .++.|++.+. +.+.+||
T Consensus 562 ---------~Gl~~~d~~--~~~~~~~~~~---------~gl~~~~i--~~i~~d~~g~lWi~t~--------~Gl~~~~ 611 (795)
T 4a2l_A 562 ---------EGFYCFNEK--DKQIKRYNTT---------NGLPNNVV--YGILEDSFGRLWLSTN--------RGISCFN 611 (795)
T ss_dssp ---------SCEEEEETT--TTEEEEECGG---------GTCSCSCE--EEEEECTTSCEEEEET--------TEEEEEE
T ss_pred ---------CCceeECCC--CCcEEEeCCC---------CCCchhhe--EEEEECCCCCEEEEcC--------CceEEEc
Confidence 368899988 6777766432 11233222 23332 3567887643 4588999
Q ss_pred CCCCCCceEEeccCCCCCCCCCC-ceeEEeCCeeEEEEcCCC
Q 042793 488 PTEEKPTWRILNVPGRPPRFAWG-HSTCVVGGTRTIVLGGQT 528 (545)
Q Consensus 488 ~~~~~~~W~~~~~~~~~p~~r~~-~~~~~~~~~~l~i~GG~~ 528 (545)
++ +.+++.......++..... .+++...++.|| |||.+
T Consensus 612 ~~--~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~-~g~~~ 650 (795)
T 4a2l_A 612 PE--TEKFRNFTESDGLQSNQFNTASYCRTSVGQMY-FGGIN 650 (795)
T ss_dssp TT--TTEEEEECGGGTCSCSCEEEEEEEECTTSCEE-EEETT
T ss_pred CC--CCcEEEcCCcCCCccccCccCceeECCCCeEE-EecCC
Confidence 96 5567766544345543332 233344456655 45543
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=94.90 E-value=2.2 Score=38.78 Aligned_cols=204 Identities=13% Similarity=0.087 Sum_probs=93.9
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCC-CCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNS-SNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t-~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
+++.+++++. ..++++|+.+ . +...+. .......-..++...+++.+++++.... ....+|.+|..+
T Consensus 52 dg~~l~~~~~-------~~i~~~d~~~~~--~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~l~~~~~~~ 119 (297)
T 2ojh_A 52 DGKYLLLNSE-------GLLYRLSLAGDP--SPEKVD--TGFATICNNDHGISPDGALYAISDKVEF-GKSAIYLLPSTG 119 (297)
T ss_dssp TSSEEEEEET-------TEEEEEESSSCC--SCEECC--CTTCCCBCSCCEECTTSSEEEEEECTTT-SSCEEEEEETTC
T ss_pred CCCEEEEEcC-------CeEEEEeCCCCC--CceEec--cccccccccceEECCCCCEEEEEEeCCC-CcceEEEEECCC
Confidence 4555555542 2799999987 6 555443 1111111122222223344455443221 235788888887
Q ss_pred CCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEEC
Q 042793 319 KPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYG 397 (545)
Q Consensus 319 ~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 397 (545)
. .-..+... . . ....... +++.+++.++.+. ...+|.+++. +.....+.. .+ .....+....
T Consensus 120 ~--~~~~~~~~--~-~--~~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~--~~~~~~~~~--~~--~~~~~~~~s~ 182 (297)
T 2ojh_A 120 G--TPRLMTKN--L-P--SYWHGWSPDGKSFTYCGIRDQ----VFDIYSMDID--SGVETRLTH--GE--GRNDGPDYSP 182 (297)
T ss_dssp C--CCEECCSS--S-S--EEEEEECTTSSEEEEEEEETT----EEEEEEEETT--TCCEEECCC--SS--SCEEEEEECT
T ss_pred C--ceEEeecC--C-C--ccceEECCCCCEEEEEECCCC----ceEEEEEECC--CCcceEccc--CC--CccccceECC
Confidence 7 55555432 1 1 1122222 4545555544321 1246666643 335554432 11 1112233333
Q ss_pred CcE-EEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEE-ecCCEEEEEcCcCC
Q 042793 398 GRK-ILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVS-LPGGRILIFGGSVA 475 (545)
Q Consensus 398 ~~~-lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~-~~~~~l~v~GG~~~ 475 (545)
+++ |++.+...+ ...+|.+++. ......+... . .....+. ..+++.+++++.+.
T Consensus 183 dg~~l~~~~~~~~-------~~~i~~~~~~--~~~~~~~~~~--------------~-~~~~~~~~s~dg~~l~~~~~~~ 238 (297)
T 2ojh_A 183 DGRWIYFNSSRTG-------QMQIWRVRVD--GSSVERITDS--------------A-YGDWFPHPSPSGDKVVFVSYDA 238 (297)
T ss_dssp TSSEEEEEECTTS-------SCEEEEEETT--SSCEEECCCC--------------S-EEEEEEEECTTSSEEEEEEEET
T ss_pred CCCEEEEEecCCC-------CccEEEECCC--CCCcEEEecC--------------C-cccCCeEECCCCCEEEEEEcCC
Confidence 334 444433221 3678888876 5555544321 1 1112222 23566666655432
Q ss_pred CCC-----CCCceEEEcCCCCCCceEEe
Q 042793 476 GLH-----SATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 476 ~~~-----~~~~v~~~d~~~~~~~W~~~ 498 (545)
... ....++++|++ +.+...+
T Consensus 239 ~~~~~~~~~~~~l~~~d~~--~~~~~~~ 264 (297)
T 2ojh_A 239 DVFDHPRDLDVRVQLMDMD--GGNVETL 264 (297)
T ss_dssp TCCSCCSSEEEEEEEEETT--SCSCEEE
T ss_pred CCCcccccCceEEEEEecC--CCCceee
Confidence 111 12569999996 3444444
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=94.87 E-value=2.5 Score=39.48 Aligned_cols=211 Identities=13% Similarity=0.050 Sum_probs=90.6
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCC--CCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEec
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLN--SSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDL 316 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~--t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~ 316 (545)
+..||+.+..+ ..+.+|++. +. +++.+.....+. .-..++.. +++.+|+.+..+ +.+.+||+
T Consensus 49 g~~l~~~~~~~------~~v~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~ 113 (343)
T 1ri6_A 49 KRYLYVGVRPE------FRVLAYRIAPDDG--ALTFAAESALPG--SLTHISTDHQGQFVFVGSYNA-----GNVSVTRL 113 (343)
T ss_dssp SSEEEEEETTT------TEEEEEEECTTTC--CEEEEEEEECSS--CCSEEEECTTSSEEEEEETTT-----TEEEEEEE
T ss_pred CCEEEEeecCC------CeEEEEEecCCCC--ceeeccccccCC--CCcEEEEcCCCCEEEEEecCC-----CeEEEEEC
Confidence 34566655421 367777766 54 666443111111 11222222 444566655321 35788888
Q ss_pred CCCCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEec--CCCCCCCCCCcEE
Q 042793 317 DAKPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIP--VTWTPPSRLGHTL 393 (545)
Q Consensus 317 ~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~--~~~~p~~r~~~~~ 393 (545)
... .....+... +.....+..+.. +++.+|+.+..+ +.+.+||+... .+...+. ....+....-..+
T Consensus 114 ~~~-~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~ 183 (343)
T 1ri6_A 114 EDG-LPVGVVDVV--EGLDGCHSANISPDNRTLWVPALKQ------DRICLFTVSDD-GHLVAQDPAEVTTVEGAGPRHM 183 (343)
T ss_dssp ETT-EEEEEEEEE--CCCTTBCCCEECTTSSEEEEEEGGG------TEEEEEEECTT-SCEEEEEEEEEECSTTCCEEEE
T ss_pred CCC-ccccccccc--cCCCCceEEEECCCCCEEEEecCCC------CEEEEEEecCC-CceeeecccccccCCCCCcceE
Confidence 422 122222211 111111222222 455677765221 35888887541 2443221 1001111111223
Q ss_pred EEEC-CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCC---CcceEEEEe-cCC-EE
Q 042793 394 SVYG-GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPP---RLDHVAVSL-PGG-RI 467 (545)
Q Consensus 394 ~~~~-~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~---r~~~~~~~~-~~~-~l 467 (545)
+... ++.+|+.+.. .+.+..||+...+.++..+.... ..|.. ......+.+ .++ .|
T Consensus 184 ~~~pdg~~l~~~~~~---------~~~i~~~~~~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~i~~s~dg~~l 245 (343)
T 1ri6_A 184 VFHPNEQYAYCVNEL---------NSSVDVWELKDPHGNIECVQTLD---------MMPENFSDTRWAADIHITPDGRHL 245 (343)
T ss_dssp EECTTSSEEEEEETT---------TTEEEEEESSCTTSCCEEEEEEE---------CSCTTCCSCCCEEEEEECTTSSEE
T ss_pred EECCCCCEEEEEeCC---------CCEEEEEEecCCCCcEEEEeecc---------ccCccccccCCccceEECCCCCEE
Confidence 3333 3357766532 35677788753234443322220 01211 111222333 244 56
Q ss_pred EEEcCcCCCCCCCCceEEEcCCCCCCceEEec
Q 042793 468 LIFGGSVAGLHSATQLYLLDPTEEKPTWRILN 499 (545)
Q Consensus 468 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~ 499 (545)
|+.+.. .+.+.+||++..+.+++.+.
T Consensus 246 ~v~~~~------~~~i~v~d~~~~~~~~~~~~ 271 (343)
T 1ri6_A 246 YACDRT------ASLITVFSVSEDGSVLSKEG 271 (343)
T ss_dssp EEEETT------TTEEEEEEECTTSCCEEEEE
T ss_pred EEEecC------CCEEEEEEEcCCCCceEEee
Confidence 655432 25688888863344555553
No 137
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=94.76 E-value=2.6 Score=39.09 Aligned_cols=186 Identities=12% Similarity=0.121 Sum_probs=88.1
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
++++++.|+.+. .+.++|..+. +....- ... ........+ .++++++.|+.+ ..+.+||+.+
T Consensus 34 ~~~~l~s~~~dg------~i~iw~~~~~--~~~~~~-~~h---~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~ 96 (312)
T 4ery_A 34 NGEWLASSSADK------LIKIWGAYDG--KFEKTI-SGH---KLGISDVAWSSDSNLLVSASDD-----KTLKIWDVSS 96 (312)
T ss_dssp TSSEEEEEETTS------CEEEEETTTC--CEEEEE-CCC---SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTT
T ss_pred CCCEEEEeeCCC------eEEEEeCCCc--ccchhh-ccC---CCceEEEEEcCCCCEEEEECCC-----CEEEEEECCC
Confidence 345666666432 5778888765 544321 111 111222223 334566777654 3688899887
Q ss_pred CCCceE-eccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEE
Q 042793 319 KPPTWR-EISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVY 396 (545)
Q Consensus 319 ~~~~W~-~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 396 (545)
. .-. .+.. .... -.++.+ .++.+++.|+.+ ..+.++|+.... .-..+.. .. ..-.+++..
T Consensus 97 ~--~~~~~~~~---~~~~--v~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~-~~~~~~~--~~--~~v~~~~~~ 158 (312)
T 4ery_A 97 G--KCLKTLKG---HSNY--VFCCNFNPQSNLIVSGSFD------ESVRIWDVKTGK-CLKTLPA--HS--DPVSAVHFN 158 (312)
T ss_dssp C--CEEEEEEC---CSSC--EEEEEECSSSSEEEEEETT------SCEEEEETTTCC-EEEEECC--CS--SCEEEEEEC
T ss_pred C--cEEEEEcC---CCCC--EEEEEEcCCCCEEEEEeCC------CcEEEEECCCCE-EEEEecC--CC--CcEEEEEEc
Confidence 7 322 1111 1111 112222 233566666643 348889975431 1122221 11 111222233
Q ss_pred CCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCC
Q 042793 397 GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAG 476 (545)
Q Consensus 397 ~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 476 (545)
.++.+++.|+. ...+..||+. +.+....... ...... .......+++.++.|+.+
T Consensus 159 ~~~~~l~~~~~---------d~~i~~wd~~--~~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~l~~~~~d-- 213 (312)
T 4ery_A 159 RDGSLIVSSSY---------DGLCRIWDTA--SGQCLKTLID-----------DDNPPV-SFVKFSPNGKYILAATLD-- 213 (312)
T ss_dssp TTSSEEEEEET---------TSCEEEEETT--TCCEEEEECC-----------SSCCCE-EEEEECTTSSEEEEEETT--
T ss_pred CCCCEEEEEeC---------CCcEEEEECC--CCceeeEEec-----------cCCCce-EEEEECCCCCEEEEEcCC--
Confidence 34466777764 3568888987 4433222111 011111 112222356777777643
Q ss_pred CCCCCceEEEcCC
Q 042793 477 LHSATQLYLLDPT 489 (545)
Q Consensus 477 ~~~~~~v~~~d~~ 489 (545)
+.+.+||+.
T Consensus 214 ----~~i~iwd~~ 222 (312)
T 4ery_A 214 ----NTLKLWDYS 222 (312)
T ss_dssp ----TEEEEEETT
T ss_pred ----CeEEEEECC
Confidence 568899986
No 138
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=94.44 E-value=3.3 Score=38.83 Aligned_cols=156 Identities=9% Similarity=0.042 Sum_probs=76.9
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
+++||+.+..+ ..+++||+.+. +.+.+... ....-++++.-.++++|+...... .....+++||+.+.
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~~~--~~~~~~~~---~~~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPETK--EIKRPFVS---HKANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAATENGD 122 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTTTC--CEEEEEEC---SSSSEEEEEECTTSCEEEEECTTS-SSCCEEEEECTTSC
T ss_pred CCCEEEEECCC------CEEEEEeCCCC--cEEEEeeC---CCCCcceEEECCCCcEEEEeCCCC-CCCceEEEEeCCCC
Confidence 46788876532 27999999877 66654311 111223333333457887653221 12246899999887
Q ss_pred CCceEec-cCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECC
Q 042793 320 PPTWREI-SGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGG 398 (545)
Q Consensus 320 ~~~W~~~-~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 398 (545)
....+ ... .....-...+.-.++.+|+.............++.+|.+ +.+...+... .. ...+++...+
T Consensus 123 --~~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~-~~---~~~~i~~~~d 192 (333)
T 2dg1_A 123 --NLQDIIEDL--STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--FRTVTPIIQN-IS---VANGIALSTD 192 (333)
T ss_dssp --SCEEEECSS--SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT--SCCEEEEEEE-ES---SEEEEEECTT
T ss_pred --EEEEEEccC--ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC--CCEEEEeecC-CC---cccceEECCC
Confidence 54422 211 111111222222345788754321111123458888843 3345444211 11 1123333333
Q ss_pred -cEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 399 -RKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 399 -~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
+.||+.... ...+++||+.
T Consensus 193 g~~l~v~~~~---------~~~i~~~d~~ 212 (333)
T 2dg1_A 193 EKVLWVTETT---------ANRLHRIALE 212 (333)
T ss_dssp SSEEEEEEGG---------GTEEEEEEEC
T ss_pred CCEEEEEeCC---------CCeEEEEEec
Confidence 357776432 3678899985
No 139
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=94.35 E-value=3.6 Score=42.06 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=36.3
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceE-EeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEec-
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQ-HVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDL- 316 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~- 316 (545)
++.+|+.+..+ +.+.++|..+. +-. .+.. ...-|.++.. +++++|+.+. + +.+.+||+
T Consensus 148 ~~~~~vs~~~d------~~V~v~D~~t~--~~~~~i~~-----g~~~~~v~~spdg~~l~v~~~-d-----~~V~v~D~~ 208 (543)
T 1nir_A 148 PNLFSVTLRDA------GQIALVDGDSK--KIVKVIDT-----GYAVHISRMSASGRYLLVIGR-D-----ARIDMIDLW 208 (543)
T ss_dssp GGEEEEEEGGG------TEEEEEETTTC--CEEEEEEC-----STTEEEEEECTTSCEEEEEET-T-----SEEEEEETT
T ss_pred CCEEEEEEcCC------CeEEEEECCCc--eEEEEEec-----CcccceEEECCCCCEEEEECC-C-----CeEEEEECc
Confidence 57888877543 26888998876 432 2221 1113444332 5567777653 2 57999999
Q ss_pred -CCC
Q 042793 317 -DAK 319 (545)
Q Consensus 317 -~t~ 319 (545)
.+.
T Consensus 209 ~~t~ 212 (543)
T 1nir_A 209 AKEP 212 (543)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 555
No 140
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=94.33 E-value=0.13 Score=41.01 Aligned_cols=66 Identities=5% Similarity=-0.132 Sum_probs=46.4
Q ss_pred CCcccccccCCCCc-ccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEee-ecCCcceeEEEEEEEeecCCCCEE
Q 042793 1 MRDLGAETNDGIRF-LQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNF-RKDGSPLMNRLRLSPIYGDDETIT 78 (545)
Q Consensus 1 ~~~~~~~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~kdG~~~w~~~~~~pi~d~~g~~~ 78 (545)
.++++|++|+++.. +.+.. ....+.+.+.+.+..+. +..++.+. +++|+++++ ++++..+.+|...
T Consensus 56 G~s~eeviGk~~f~~~~p~~---------~~~~f~grf~~~~~~G~-l~~~~~yv~~~~~~p~~v--~i~l~~~~~~~~~ 123 (129)
T 1mzu_A 56 GRIPERVIGRNFFTEVAPCT---------NIPAFSGRFMDGVTSGT-LDARFDFVFDFQMAPVRV--QIRMQNAGVPDRY 123 (129)
T ss_dssp CCCHHHHTTSBCCCCCCGGG---------CSTTTHHHHHHHHHTSC-CEEEEEEEEECSSCEEEE--EEEEEECSSTTEE
T ss_pred CCCHHHHcCCchhhhccchh---------cccHHHHHHHHHHhcCc-eeEEEEEEEcCCCCEEEE--EEEEEEcCCCCEE
Confidence 47899999999853 33333 56677888888888665 66665554 999996555 5566667777754
No 141
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=94.26 E-value=0.12 Score=41.21 Aligned_cols=66 Identities=6% Similarity=-0.088 Sum_probs=46.5
Q ss_pred CCcccccccCCCCc-ccCCCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEEee-ecCCcceeEEEEEEEeecCCCCEE
Q 042793 1 MRDLGAETNDGIRF-LQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNF-RKDGSPLMNRLRLSPIYGDDETIT 78 (545)
Q Consensus 1 ~~~~~~~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~kdG~~~w~~~~~~pi~d~~g~~~ 78 (545)
.++++|++|+++.. +.+.. ..+.+.+.+.+.+..|. +..++.+. +++|+++++ ++++..+.+|...
T Consensus 51 G~~~~eviGk~~f~~~~~~~---------~~~~f~~rf~~~~~~g~-l~~~~~~v~~~~~~p~~v--~i~l~~~~~~~~~ 118 (125)
T 1nwz_A 51 GRDPKQVIGKNFFKDVAPCT---------DSPEFYGKFKEGVASGN-LNTMFEYTFDYQMTPTKV--KVHMKKALSGDSY 118 (125)
T ss_dssp CCCHHHHTTSBCCCCCCGGG---------CSTTTHHHHHHHHHHTC-CEEEEEEEECTTSCCEEE--EEEEEECSSSSEE
T ss_pred CCCHHHHcCCchhhhccchh---------cccHHHHHHHHHHhcCc-eeEEEEEEEcCCCCEEEE--EEEEEEcCCCCEE
Confidence 47899999999853 33333 56677888888888766 66565554 999996655 4556666777654
No 142
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=94.23 E-value=3.8 Score=38.80 Aligned_cols=108 Identities=11% Similarity=0.168 Sum_probs=50.3
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
++.+++.|+.+. .+.++|+.+. ++..... .........+..+ .+++.++.|+.+ ..+.+||+.+
T Consensus 63 ~~~~l~~~~~dg------~i~vwd~~~~--~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~ 127 (372)
T 1k8k_C 63 DSNRIVTCGTDR------NAYVWTLKGR--TWKPTLV--ILRINRAARCVRWAPNEKKFAVGSGS-----RVISICYFEQ 127 (372)
T ss_dssp TTTEEEEEETTS------CEEEEEEETT--EEEEEEE--CCCCSSCEEEEEECTTSSEEEEEETT-----SSEEEEEEET
T ss_pred CCCEEEEEcCCC------eEEEEECCCC--eeeeeEE--eecCCCceeEEEECCCCCEEEEEeCC-----CEEEEEEecC
Confidence 455666666432 6888888776 6554321 1111111222223 233566666643 3577777776
Q ss_pred CCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEec
Q 042793 319 KPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDL 369 (545)
Q Consensus 319 ~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~ 369 (545)
.. .|........+....-.+.+...++.+++.|+.+ ..+.+||+
T Consensus 128 ~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~ 171 (372)
T 1k8k_C 128 EN-DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD------FKCRIFSA 171 (372)
T ss_dssp TT-TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT------SCEEEEEC
T ss_pred CC-cceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC------CCEEEEEc
Confidence 52 2332221100111111122222344566666642 34788885
No 143
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=94.19 E-value=2.3 Score=41.94 Aligned_cols=107 Identities=11% Similarity=0.095 Sum_probs=53.6
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE--cCCEEEEEcCCCCCcccCcEEEEecC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV--NGSHLVVFGGCGRQGLLNDVFVLDLD 317 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~ 317 (545)
++.+++.|+.+. .+.++|+.+. .-..+. ........-.+..+ .+..+++.|+.++ .+-++|+.
T Consensus 131 ~~~~lasGs~dg------~i~lWd~~~~--~~~~~~--~~~gH~~~V~~l~f~p~~~~~l~s~s~D~-----~v~iwd~~ 195 (435)
T 4e54_B 131 HPSTVAVGSKGG------DIMLWNFGIK--DKPTFI--KGIGAGGSITGLKFNPLNTNQFYASSMEG-----TTRLQDFK 195 (435)
T ss_dssp CTTCEEEEETTS------CEEEECSSCC--SCCEEE--CCCSSSCCCCEEEECSSCTTEEEEECSSS-----CEEEEETT
T ss_pred CCCEEEEEeCCC------EEEEEECCCC--CceeEE--EccCCCCCEEEEEEeCCCCCEEEEEeCCC-----EEEEeecc
Confidence 345777777543 6888888765 322211 11111111222333 2334666666543 57888998
Q ss_pred CCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 318 AKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 318 t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
++ ....+.... .......+.....++.+++.|+.+ ..+.++|++
T Consensus 196 ~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~d------g~i~~wd~~ 239 (435)
T 4e54_B 196 GN--ILRVFASSD-TINIWFCSLDVSASSRMVVTGDNV------GNVILLNMD 239 (435)
T ss_dssp SC--EEEEEECCS-SCSCCCCCEEEETTTTEEEEECSS------SBEEEEESS
T ss_pred CC--ceeEEeccC-CCCccEEEEEECCCCCEEEEEeCC------CcEeeeccC
Confidence 77 554443221 111111222233344677777753 357888864
No 144
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=94.11 E-value=4.5 Score=39.17 Aligned_cols=147 Identities=11% Similarity=0.035 Sum_probs=70.7
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++.+++.|+.+. .+.++|+.+. +....- . .......+..+++ .+++.|+.+ ..+.++|+.+.
T Consensus 145 ~~~~l~~~~~dg------~i~iwd~~~~--~~~~~~--~--~~~~~v~~~~~~~-~~l~~~~~d-----g~i~i~d~~~~ 206 (401)
T 4aez_A 145 DGSFLSVGLGNG------LVDIYDVESQ--TKLRTM--A--GHQARVGCLSWNR-HVLSSGSRS-----GAIHHHDVRIA 206 (401)
T ss_dssp TSSEEEEEETTS------CEEEEETTTC--CEEEEE--C--CCSSCEEEEEEET-TEEEEEETT-----SEEEEEETTSS
T ss_pred CCCEEEEECCCC------eEEEEECcCC--eEEEEe--c--CCCCceEEEEECC-CEEEEEcCC-----CCEEEEecccC
Confidence 455666665432 6889998776 332211 1 1122233344556 466666644 46888998854
Q ss_pred CCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEEC-C
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYG-G 398 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~ 398 (545)
...-..+... .. .-.+.....++.+++.|+.+ +.+.+||+....... .+.. .. ..-.+++... +
T Consensus 207 ~~~~~~~~~~--~~--~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~-~~~~--~~--~~v~~~~~~p~~ 271 (401)
T 4aez_A 207 NHQIGTLQGH--SS--EVCGLAWRSDGLQLASGGND------NVVQIWDARSSIPKF-TKTN--HN--AAVKAVAWCPWQ 271 (401)
T ss_dssp SCEEEEEECC--SS--CEEEEEECTTSSEEEEEETT------SCEEEEETTCSSEEE-EECC--CS--SCCCEEEECTTS
T ss_pred cceeeEEcCC--CC--CeeEEEEcCCCCEEEEEeCC------CeEEEccCCCCCccE-EecC--Cc--ceEEEEEECCCC
Confidence 2122222211 11 11112222234566667643 358899976432222 2211 11 1122333333 3
Q ss_pred cEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 399 RKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 399 ~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
..+++.||... ...+..||+.
T Consensus 272 ~~ll~~~~gs~-------d~~i~i~d~~ 292 (401)
T 4aez_A 272 SNLLATGGGTM-------DKQIHFWNAA 292 (401)
T ss_dssp TTEEEEECCTT-------TCEEEEEETT
T ss_pred CCEEEEecCCC-------CCEEEEEECC
Confidence 36777765221 3668888987
No 145
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=94.06 E-value=4 Score=38.44 Aligned_cols=67 Identities=4% Similarity=0.001 Sum_probs=33.1
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++.++.|+.+. .+.++|+.+. +..... .... .-.+++...+++.+++++.+.......+.+||+.+.
T Consensus 86 ~~~l~s~~~dg------~i~iwd~~~~--~~~~~~--~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~ 152 (369)
T 3zwl_B 86 TKYCVTGSADY------SIKLWDVSNG--QCVATW--KSPV--PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD 152 (369)
T ss_dssp SSEEEEEETTT------EEEEEETTTC--CEEEEE--ECSS--CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred CCEEEEEeCCC------eEEEEECCCC--cEEEEe--ecCC--CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence 45556665432 6888998876 333221 1111 112222223334555555442223356788887654
No 146
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=93.96 E-value=3.5 Score=39.20 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=50.0
Q ss_pred CCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEE--cCCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 293 GSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL--DGTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 293 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
+++.++.|+.++ .+.++|+.+. + .+..+....... .++.+ ++..+++.|+.+ ..+.++|+.
T Consensus 138 dg~~l~sgs~d~-----~i~iwd~~~~--~--~~~~~~~h~~~V--~~~~~~~~~~~~l~s~s~D------~~v~iwd~~ 200 (344)
T 4gqb_B 138 SGTQAVSGSKDI-----CIKVWDLAQQ--V--VLSSYRAHAAQV--TCVAASPHKDSVFLSCSED------NRILLWDTR 200 (344)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTT--E--EEEEECCCSSCE--EEEEECSSCTTEEEEEETT------SCEEEEETT
T ss_pred CCCEEEEEeCCC-----eEEEEECCCC--c--EEEEEcCcCCce--EEEEecCCCCCceeeeccc------ccccccccc
Confidence 345666776543 5888999887 3 222221011111 12222 344567777653 247888975
Q ss_pred CCCCceEEecCCCCCCCCCCcEEEEE-CCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 371 MEKPVWREIPVTWTPPSRLGHTLSVY-GGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 371 ~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
... .-..+.. ........+++.. .++.+++.|+. ...|..+|+.
T Consensus 201 ~~~-~~~~~~~--~~~~~~~~~~~~~p~~~~~l~sg~~---------dg~v~~wd~~ 245 (344)
T 4gqb_B 201 CPK-PASQIGC--SAPGYLPTSLAWHPQQSEVFVFGDE---------NGTVSLVDTK 245 (344)
T ss_dssp SSS-CEEECC------CCCEEEEEECSSCTTEEEEEET---------TSEEEEEESC
T ss_pred ccc-eeeeeec--ceeeccceeeeecCCCCcceEEecc---------CCcEEEEECC
Confidence 431 1222221 1111111122222 23367777764 2567788987
No 147
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=93.95 E-value=0.014 Score=56.17 Aligned_cols=45 Identities=36% Similarity=0.707 Sum_probs=39.2
Q ss_pred cCcccchhhHHHHHhhccCChhhhhhHHHhhHHHHHhcCChhhHHH
Q 042793 133 CGIFQLSDEVISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWRM 178 (545)
Q Consensus 133 ~~~~~lp~~~~~~~~~~~l~~~~~~~~~~vcr~~~~l~~s~~~~~~ 178 (545)
..+..||+|++ .+|+++++..++..++.|||+|+.++.++.+|+.
T Consensus 7 ~~~~~LP~eil-~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~ 51 (336)
T 2ast_B 7 VSWDSLPDELL-LGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT 51 (336)
T ss_dssp CCSSSSCHHHH-HHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSE
T ss_pred CChhhCCHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHhcCchhhee
Confidence 45778999999 5899999999999999999999999987766543
No 148
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=93.92 E-value=3.2 Score=42.50 Aligned_cols=247 Identities=11% Similarity=0.099 Sum_probs=112.0
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeC--CCCCCce-EEeccCCCCCCccceeEEEE-----cCCEEEEEcCCCCCcccCcE
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDL--NSSNPEW-QHVHVSSPPPGRWGHTLSCV-----NGSHLVVFGGCGRQGLLNDV 311 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~--~t~~~~W-~~~~~~~~~~~r~~~~~~~~-----~~~~iyv~GG~~~~~~~~~~ 311 (545)
+..||+.+.. +.+.+||+ .+. +- ..++ ....-+.++.. +++.+|+..-. .+.+
T Consensus 190 g~~l~v~~~d-------~~V~v~D~~~~t~--~~~~~i~-----~g~~p~~va~sp~~~~dg~~l~v~~~~-----~~~v 250 (543)
T 1nir_A 190 GRYLLVIGRD-------ARIDMIDLWAKEP--TKVAEIK-----IGIEARSVESSKFKGYEDRYTIAGAYW-----PPQF 250 (543)
T ss_dssp SCEEEEEETT-------SEEEEEETTSSSC--EEEEEEE-----CCSEEEEEEECCSTTCTTTEEEEEEEE-----SSEE
T ss_pred CCEEEEECCC-------CeEEEEECcCCCC--cEEEEEe-----cCCCcceEEeCCCcCCCCCEEEEEEcc-----CCeE
Confidence 3467766532 37999999 554 32 2222 11122233332 45566665321 2467
Q ss_pred EEEecCCCCCceEeccC--CC------CCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCce-EEecCC
Q 042793 312 FVLDLDAKPPTWREISG--LA------PPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVW-REIPVT 382 (545)
Q Consensus 312 ~~yd~~t~~~~W~~~~~--~~------~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W-~~~~~~ 382 (545)
.++|..+.... ..++. +. .+.+|........++..+|+.... .+.++++|+....... ..+..
T Consensus 251 ~v~D~~t~~~~-~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------~g~i~vvd~~~~~~l~~~~i~~- 322 (543)
T 1nir_A 251 AIMDGETLEPK-QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------TGKVLLVNYKDIDNLTVTSIGA- 322 (543)
T ss_dssp EEEETTTCCEE-EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------TTEEEEEECTTSSSCEEEEEEC-
T ss_pred EEEeccccccc-eeecccCcccCccccccCCceEEEEECCCCCEEEEEECC------CCeEEEEEecCCCcceeEEecc-
Confidence 88898876211 12221 10 012232222222235566665432 2468889865432221 12222
Q ss_pred CCCCCCCCcEEEEECCcE-EEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEE
Q 042793 383 WTPPSRLGHTLSVYGGRK-ILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVS 461 (545)
Q Consensus 383 ~~p~~r~~~~~~~~~~~~-lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~ 461 (545)
.+.-+.++...+++ +|+.+.. .+.|.++|.. +.+-...-.. +..|.+-.+. .+.
T Consensus 323 ----~~~~~~~~~spdg~~l~va~~~---------~~~v~v~D~~--tg~l~~~i~~---------g~~ph~g~g~-~~~ 377 (543)
T 1nir_A 323 ----APFLHDGGWDSSHRYFMTAANN---------SNKVAVIDSK--DRRLSALVDV---------GKTPHPGRGA-NFV 377 (543)
T ss_dssp ----CSSCCCEEECTTSCEEEEEEGG---------GTEEEEEETT--TTEEEEEEEC---------SSSBCCTTCE-EEE
T ss_pred ----CcCccCceECCCCCEEEEEecC---------CCeEEEEECC--CCeEEEeecc---------CCCCCCCCCc-ccC
Confidence 22333444443334 5544332 4778889988 5544332222 2233332222 223
Q ss_pred ecC-CEEEEEcCcCCCCCCCCceEEEcCCCCC---CceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccc
Q 042793 462 LPG-GRILIFGGSVAGLHSATQLYLLDPTEEK---PTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSEL 537 (545)
Q Consensus 462 ~~~-~~l~v~GG~~~~~~~~~~v~~~d~~~~~---~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~ 537 (545)
..+ +.+|+.+... .+.|-++|+++++ ..|+.++........ .......-.+..||+-.-.+++...-+.|
T Consensus 378 ~p~~g~~~~s~~~~-----d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~-~~~v~~~pdg~~l~v~~~~~~~~~~~~~v 451 (543)
T 1nir_A 378 HPKYGPVWSTSHLG-----DGSISLIGTDPKNHPQYAWKKVAELQGQGGG-SLFIKTHPKSSHLYVDTTFNPDARISQSV 451 (543)
T ss_dssp ETTTEEEEEEEBSS-----SSEEEEEECCTTTCTTTBTSEEEEEECSCSC-CCCEECCTTCCEEEECCTTCSSHHHHTCE
T ss_pred CCCCccEEEeccCC-----CceEEEEEeCCCCCchhcCeEEEEEEcCCCC-ceEEEcCCCCCcEEEecCCCCCcccCceE
Confidence 333 6788776421 2468888886421 238877543221111 01111111245556532122221123567
Q ss_pred eeeeecc
Q 042793 538 HELSLVS 544 (545)
Q Consensus 538 ~~l~l~~ 544 (545)
.+||+++
T Consensus 452 ~v~d~~~ 458 (543)
T 1nir_A 452 AVFDLKN 458 (543)
T ss_dssp EEEETTC
T ss_pred EEEECCC
Confidence 7777754
No 149
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=93.85 E-value=2.4 Score=40.52 Aligned_cols=185 Identities=12% Similarity=0.007 Sum_probs=84.3
Q ss_pred CCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEE--cCCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 293 GSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL--DGTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 293 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
+++.++.|+.+ ..+.++|+.+. +-.. .+...... -.++.+ .+..+++.++.+ ..+.++|+.
T Consensus 150 dg~~l~sgs~d-----g~v~iwd~~~~--~~~~--~~~~h~~~--v~~v~~s~~~~~~~~s~~~d------g~v~~wd~~ 212 (357)
T 4g56_B 150 DGTQAVSGGKD-----FSVKVWDLSQK--AVLK--SYNAHSSE--VNCVAACPGKDTIFLSCGED------GRILLWDTR 212 (357)
T ss_dssp SSSEEEEEETT-----SCEEEEETTTT--EEEE--EECCCSSC--EEEEEECTTCSSCEEEEETT------SCEEECCTT
T ss_pred CCCEEEEEeCC-----CeEEEEECCCC--cEEE--EEcCCCCC--EEEEEEccCCCceeeeeccC------CceEEEECC
Confidence 33566667654 35888999887 3221 11101111 112222 233466666643 247788865
Q ss_pred CCCCceEEecCCCCCCCCCCcEEEEE--CCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCc-eEEeecCCCCCCCCCC
Q 042793 371 MEKPVWREIPVTWTPPSRLGHTLSVY--GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPC-WRCVTGSGMPGAGNPG 447 (545)
Q Consensus 371 ~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~-W~~v~~~~~~~~~~~~ 447 (545)
.. +-..... ..........+.+ .++.+++.|+. ...|..||+. +.+ -..+..
T Consensus 213 ~~--~~~~~~~--~~~~~~~v~~v~~sp~~~~~la~g~~---------d~~i~~wd~~--~~~~~~~~~~---------- 267 (357)
T 4g56_B 213 KP--KPATRID--FCASDTIPTSVTWHPEKDDTFACGDE---------TGNVSLVNIK--NPDSAQTSAV---------- 267 (357)
T ss_dssp SS--SCBCBCC--CTTCCSCEEEEEECTTSTTEEEEEES---------SSCEEEEESS--CGGGCEEECC----------
T ss_pred CC--ceeeeee--eccccccccchhhhhcccceEEEeec---------ccceeEEECC--CCcEeEEEec----------
Confidence 33 2111110 1111111222233 23367777764 3568888987 322 122211
Q ss_pred CCCCCCCcceEEEEe-cC-CEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeC--CeeEEE
Q 042793 448 GIAPPPRLDHVAVSL-PG-GRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVG--GTRTIV 523 (545)
Q Consensus 448 g~~p~~r~~~~~~~~-~~-~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~~~l~i 523 (545)
....-.++.+ .+ +++++.|+.+ ..|.+||+. +.+ .+...+. . ..-.++.+. ++.+++
T Consensus 268 -----~~~~v~~l~~sp~~~~~lasgs~D------~~i~iwd~~--~~~--~~~~~~H---~-~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 268 -----HSQNITGLAYSYHSSPFLASISED------CTVAVLDAD--FSE--VFRDLSH---R-DFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp -----CSSCEEEEEECSSSSCCEEEEETT------SCEEEECTT--SCE--EEEECCC---S-SCEEEEEECSSSTTEEE
T ss_pred -----cceeEEEEEEcCCCCCEEEEEeCC------CEEEEEECC--CCc--EeEECCC---C-CCEEEEEEeCCCCCEEE
Confidence 1111223333 23 3566667644 458889986 322 2222111 0 011222332 567788
Q ss_pred EcCCCCcccccccceeeeecc
Q 042793 524 LGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 524 ~GG~~~~~~~~~~~~~l~l~~ 544 (545)
-||.++. |.++++++
T Consensus 329 s~s~Dg~------v~iW~~~~ 343 (357)
T 4g56_B 329 TVGWDHK------VLHHHLPS 343 (357)
T ss_dssp EEETTSC------EEEEECC-
T ss_pred EEcCCCe------EEEEECCC
Confidence 8887643 55566543
No 150
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=93.84 E-value=1.5 Score=47.14 Aligned_cols=205 Identities=11% Similarity=0.098 Sum_probs=96.0
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEc-C--CEEEEEcCCCCCcccCcEEEEecC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVN-G--SHLVVFGGCGRQGLLNDVFVLDLD 317 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~ 317 (545)
+.+++.|+.+. .+.++|+.+. +|..+.. .........++.+. + +.+++.|+.+ ..+.+||+.
T Consensus 67 ~~~l~s~s~Dg------~I~vwd~~~~--~~~~~~~--~~~h~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~vwdl~ 131 (753)
T 3jro_A 67 GTILASCSYDG------KVLIWKEENG--RWSQIAV--HAVHSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFK 131 (753)
T ss_dssp CSEEEEEETTS------CEEEEEEETT--EEEEEEE--ECCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECC
T ss_pred CCEEEEEeCCC------eEEEEECCCC--ccccccc--ccCCCCCeEEEEECCCCCCCEEEEEeCC-----CcEEEEEee
Confidence 55666776542 6888888876 6655432 11112222333332 1 3566777654 357888887
Q ss_pred CCCCceE-eccCCCCCCCCccceEEEEc--------------CCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCC
Q 042793 318 AKPPTWR-EISGLAPPLPRSWHSSCTLD--------------GTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVT 382 (545)
Q Consensus 318 t~~~~W~-~~~~~~~~~~r~~~~~~~~~--------------~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~ 382 (545)
+....-. .+... +.+ -.++.+. ++.+++.|+.+ +.+.+||+......+..+..-
T Consensus 132 ~~~~~~~~~~~~~--~~~---v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~~ 200 (753)
T 3jro_A 132 ENGTTSPIIIDAH--AIG---VNSASWAPATIEEDGEHNGTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLESTL 200 (753)
T ss_dssp SSSCCCCEEEECC--SSC---EEEEEECCCC---------CGGGCCEEEEETT------SCEEEEEEETTTTEEEEEEEE
T ss_pred cCCCcceeEeecC--CCc---eEEEEecCcccccccccccCCCCCEEEEEECC------CeEEEEeccCCcccceeeeee
Confidence 6511100 11110 111 1112221 23566666642 347888876655555544320
Q ss_pred CCCCCCCCcEEEEECC---cEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEE
Q 042793 383 WTPPSRLGHTLSVYGG---RKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVA 459 (545)
Q Consensus 383 ~~p~~r~~~~~~~~~~---~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~ 459 (545)
......-.+++...+ +.+++.||.+ ..+..||+.+....+...... .......-.+.
T Consensus 201 -~~h~~~V~~l~~sp~~~~~~~l~s~s~D---------g~I~iwd~~~~~~~~~~~~~~----------~~~~~~~v~~l 260 (753)
T 3jro_A 201 -EGHSDWVRDVAWSPTVLLRSYLASVSQD---------RTCIIWTQDNEQGPWKKTLLK----------EEKFPDVLWRA 260 (753)
T ss_dssp -CCCSSCEEEEEECCCCSSSEEEEEEESS---------SCEEEEEESSSSSCCBCCBSS----------SSCCSSCCCCE
T ss_pred -cCCCCcEEEEEeccCCCCCCEEEEEecC---------CEEEEecCCCCCCcceeEEec----------cCCCCCceEEE
Confidence 111111223333333 4778887753 557777776322222211111 00001111122
Q ss_pred EEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEe
Q 042793 460 VSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 460 ~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~ 498 (545)
....++.+++.||.+ +.+.+||+.+ ...|...
T Consensus 261 ~~spdg~~l~s~s~D------g~I~vwd~~~-~~~~~~~ 292 (753)
T 3jro_A 261 SWSLSGNVLALSGGD------NKVTLWKENL-EGKWEPA 292 (753)
T ss_dssp EECTTTCCEEEECSS------SCEECCBCCS-SSCCBCC
T ss_pred EEcCCCCEEEEEcCC------CEEEEEecCC-CCCcccc
Confidence 223467777777754 4577777752 3455544
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=93.81 E-value=3.7 Score=37.13 Aligned_cols=146 Identities=10% Similarity=0.037 Sum_probs=69.0
Q ss_pred CceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCC-CCCceEeccCCCCCCCC
Q 042793 257 NDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDA-KPPTWREISGLAPPLPR 335 (545)
Q Consensus 257 ~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t-~~~~W~~~~~~~~~~~r 335 (545)
..++++|+.+. +...+.. .. ..-.+++...+++.+++++ ...++++|+.+ . ....+... ....
T Consensus 22 ~~i~~~d~~~~--~~~~~~~--~~--~~v~~~~~spdg~~l~~~~------~~~i~~~d~~~~~--~~~~~~~~--~~~~ 85 (297)
T 2ojh_A 22 SSIEIFNIRTR--KMRVVWQ--TP--ELFEAPNWSPDGKYLLLNS------EGLLYRLSLAGDP--SPEKVDTG--FATI 85 (297)
T ss_dssp EEEEEEETTTT--EEEEEEE--ES--SCCEEEEECTTSSEEEEEE------TTEEEEEESSSCC--SCEECCCT--TCCC
T ss_pred eeEEEEeCCCC--ceeeecc--CC--cceEeeEECCCCCEEEEEc------CCeEEEEeCCCCC--CceEeccc--cccc
Confidence 47899999877 5554431 11 1112222222334555553 13789999988 7 55555432 1111
Q ss_pred ccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEEC-CcEEEEEcccCCCCCCc
Q 042793 336 SWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYG-GRKILMFGGLAKSGPLR 414 (545)
Q Consensus 336 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~lyi~GG~~~~~~~~ 414 (545)
.........+++.+++++.... ....++.+++.. .....+.. .. . ...+.... ++.|++.++...
T Consensus 86 ~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~--~~~~~~~~--~~-~--~~~~~~spdg~~l~~~~~~~~----- 151 (297)
T 2ojh_A 86 CNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTG--GTPRLMTK--NL-P--SYWHGWSPDGKSFTYCGIRDQ----- 151 (297)
T ss_dssp BCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTC--CCCEECCS--SS-S--EEEEEECTTSSEEEEEEEETT-----
T ss_pred cccceEECCCCCEEEEEEeCCC--CcceEEEEECCC--CceEEeec--CC-C--ccceEECCCCCEEEEEECCCC-----
Confidence 1112222223344444442211 235688888543 34444432 11 1 22333332 334554544321
Q ss_pred cccCcEEEEeCCCCCCceEEee
Q 042793 415 FRSSDVFTMDLSEEEPCWRCVT 436 (545)
Q Consensus 415 ~~~~~i~~~d~~~~~~~W~~v~ 436 (545)
...+|.++.. +.+...+.
T Consensus 152 --~~~l~~~~~~--~~~~~~~~ 169 (297)
T 2ojh_A 152 --VFDIYSMDID--SGVETRLT 169 (297)
T ss_dssp --EEEEEEEETT--TCCEEECC
T ss_pred --ceEEEEEECC--CCcceEcc
Confidence 3478888876 55555443
No 152
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=93.78 E-value=3.2 Score=40.77 Aligned_cols=187 Identities=14% Similarity=0.080 Sum_probs=93.1
Q ss_pred eeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEE
Q 042793 235 SACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVL 314 (545)
Q Consensus 235 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y 314 (545)
.++..++.+++.|+.+. .+.++|+.+. +-...- ........+..+.++ .++.|+.+ ..+.+|
T Consensus 177 ~~l~~~~~~l~sg~~dg------~i~vwd~~~~--~~~~~~----~~h~~~v~~l~~~~~-~l~s~s~d-----g~i~vw 238 (435)
T 1p22_A 177 LCLQYDERVIITGSSDS------TVRVWDVNTG--EMLNTL----IHHCEAVLHLRFNNG-MMVTCSKD-----RSIAVW 238 (435)
T ss_dssp EEEECCSSEEEEEETTS------CEEEEESSSC--CEEEEE----CCCCSCEEEEECCTT-EEEEEETT-----SCEEEE
T ss_pred EEEEECCCEEEEEcCCC------eEEEEECCCC--cEEEEE----cCCCCcEEEEEEcCC-EEEEeeCC-----CcEEEE
Confidence 34445677777777543 6889998876 332211 111122233344554 66666644 368889
Q ss_pred ecCCCCCceE-eccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEE
Q 042793 315 DLDAKPPTWR-EISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTL 393 (545)
Q Consensus 315 d~~t~~~~W~-~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~ 393 (545)
|+.+...... .... .....-.++..++ ..++.|+.+ ..+.++|+.+.... ..+.. .. ....+
T Consensus 239 d~~~~~~~~~~~~~~----~~~~~v~~~~~~~-~~l~s~~~d------g~i~vwd~~~~~~~-~~~~~--~~---~~v~~ 301 (435)
T 1p22_A 239 DMASPTDITLRRVLV----GHRAAVNVVDFDD-KYIVSASGD------RTIKVWNTSTCEFV-RTLNG--HK---RGIAC 301 (435)
T ss_dssp ECSSSSCCEEEEEEC----CCSSCEEEEEEET-TEEEEEETT------SEEEEEETTTCCEE-EEEEC--CS---SCEEE
T ss_pred eCCCCCCceeeeEec----CCCCcEEEEEeCC-CEEEEEeCC------CeEEEEECCcCcEE-EEEcC--CC---CcEEE
Confidence 9887621111 1111 1111222334455 455555532 35888996543211 12221 11 11223
Q ss_pred EEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCc
Q 042793 394 SVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGS 473 (545)
Q Consensus 394 ~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~ 473 (545)
+..++ .+++.|+. ...+..||+. +.+- +... ......-.++.. ++..++.|+.
T Consensus 302 ~~~~~-~~l~~g~~---------dg~i~iwd~~--~~~~--~~~~------------~~h~~~v~~~~~-~~~~l~sg~~ 354 (435)
T 1p22_A 302 LQYRD-RLVVSGSS---------DNTIRLWDIE--CGAC--LRVL------------EGHEELVRCIRF-DNKRIVSGAY 354 (435)
T ss_dssp EEEET-TEEEEEET---------TSCEEEEETT--TCCE--EEEE------------CCCSSCEEEEEC-CSSEEEEEET
T ss_pred EEeCC-CEEEEEeC---------CCeEEEEECC--CCCE--EEEE------------eCCcCcEEEEEe-cCCEEEEEeC
Confidence 33444 56666664 3678888987 3322 2211 111112234444 7778888875
Q ss_pred CCCCCCCCceEEEcCC
Q 042793 474 VAGLHSATQLYLLDPT 489 (545)
Q Consensus 474 ~~~~~~~~~v~~~d~~ 489 (545)
+ +.+.+||+.
T Consensus 355 d------g~i~vwd~~ 364 (435)
T 1p22_A 355 D------GKIKVWDLV 364 (435)
T ss_dssp T------SCEEEEEHH
T ss_pred C------CcEEEEECC
Confidence 4 568888874
No 153
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=93.78 E-value=2.7 Score=39.65 Aligned_cols=61 Identities=5% Similarity=-0.020 Sum_probs=34.4
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceE-EeccCCCCCCccceeEEEE-c-CCEEEEEcCCCCCcccCcEEEEecC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQ-HVHVSSPPPGRWGHTLSCV-N-GSHLVVFGGCGRQGLLNDVFVLDLD 317 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~~~~r~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~yd~~ 317 (545)
+.+++.|+.+. .+.++|+.+. +-. .+. ... ....+..+ . +..+++.|+.+ ..+.+||+.
T Consensus 85 ~~~l~~~~~dg------~i~v~d~~~~--~~~~~~~--~~~---~~i~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~ 146 (366)
T 3k26_A 85 HPLLAVAGSRG------IIRIINPITM--QCIKHYV--GHG---NAINELKFHPRDPNLLLSVSKD-----HALRLWNIQ 146 (366)
T ss_dssp CEEEEEEETTC------EEEEECTTTC--CEEEEEE--SCC---SCEEEEEECSSCTTEEEEEETT-----SCEEEEETT
T ss_pred CCEEEEecCCC------EEEEEEchhc--eEeeeec--CCC---CcEEEEEECCCCCCEEEEEeCC-----CeEEEEEee
Confidence 46777777542 6889998765 322 221 111 11222233 2 34567777654 358999998
Q ss_pred CC
Q 042793 318 AK 319 (545)
Q Consensus 318 t~ 319 (545)
+.
T Consensus 147 ~~ 148 (366)
T 3k26_A 147 TD 148 (366)
T ss_dssp TT
T ss_pred cC
Confidence 77
No 154
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=93.66 E-value=5.4 Score=38.54 Aligned_cols=155 Identities=13% Similarity=0.053 Sum_probs=72.2
Q ss_pred CCEEEEEcCCCCCcccCcEEEEecCCCCCceE-----eccCCCCCCCCccceEEEEc-C-CEEEEEcCCCCCCCccCcEE
Q 042793 293 GSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWR-----EISGLAPPLPRSWHSSCTLD-G-TKLIVSGGCADSGVLLSDTF 365 (545)
Q Consensus 293 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~-----~~~~~~~~~~r~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~ 365 (545)
++.+++.|+.+ ..+.+||+.+. ... .+.... .....-.++.+. + ..+++.|+.+ ..+.
T Consensus 93 ~~~~l~s~s~d-----g~v~vw~~~~~--~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~~~d------g~i~ 157 (402)
T 2aq5_A 93 NDNVIASGSED-----CTVMVWEIPDG--GLVLPLREPVITLE--GHTKRVGIVAWHPTAQNVLLSAGCD------NVIL 157 (402)
T ss_dssp CTTEEEEEETT-----SEEEEEECCTT--CCSSCBCSCSEEEE--CCSSCEEEEEECSSBTTEEEEEETT------SCEE
T ss_pred CCCEEEEEeCC-----CeEEEEEccCC--CCccccCCceEEec--CCCCeEEEEEECcCCCCEEEEEcCC------CEEE
Confidence 34577777654 35888998876 321 111110 001111122232 2 2466666643 3588
Q ss_pred EEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCC
Q 042793 366 LLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGN 445 (545)
Q Consensus 366 ~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~ 445 (545)
++|+... +....-. .......-.+++...++.+++.|+. ...+..||+. +.+-......
T Consensus 158 iwd~~~~--~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~--~~~~~~~~~~------- 216 (402)
T 2aq5_A 158 VWDVGTG--AAVLTLG-PDVHPDTIYSVDWSRDGALICTSCR---------DKRVRVIEPR--KGTVVAEKDR------- 216 (402)
T ss_dssp EEETTTT--EEEEEEC-TTTCCSCEEEEEECTTSSCEEEEET---------TSEEEEEETT--TTEEEEEEEC-------
T ss_pred EEECCCC--CccEEEe-cCCCCCceEEEEECCCCCEEEEEec---------CCcEEEEeCC--CCceeeeecc-------
Confidence 9997543 3322110 0011112233333334466666664 3678889987 4333222101
Q ss_pred CCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCC
Q 042793 446 PGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTE 490 (545)
Q Consensus 446 ~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~ 490 (545)
..............++++++.|... .....+.+||+.+
T Consensus 217 ----~~~~~~~~~~~~~~~~~~l~~g~~~---~~d~~i~iwd~~~ 254 (402)
T 2aq5_A 217 ----PHEGTRPVHAVFVSEGKILTTGFSR---MSERQVALWDTKH 254 (402)
T ss_dssp ----SSCSSSCCEEEECSTTEEEEEEECT---TCCEEEEEEETTB
T ss_pred ----CCCCCcceEEEEcCCCcEEEEeccC---CCCceEEEEcCcc
Confidence 0111111223333477887777210 1236789999863
No 155
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=93.56 E-value=5.6 Score=38.35 Aligned_cols=147 Identities=9% Similarity=-0.032 Sum_probs=67.2
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++++++.|+.+. .+.++|.... ....+. .. . ..-.+++...++..++.|+.+ ..+.+||+.+.
T Consensus 119 ~~~~l~~~~~dg------~i~i~~~~~~--~~~~~~--~~-~-~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~ 181 (425)
T 1r5m_A 119 DGNSIVTGVENG------ELRLWNKTGA--LLNVLN--FH-R-APIVSVKWNKDGTHIISMDVE-----NVTILWNVISG 181 (425)
T ss_dssp TSSEEEEEETTS------CEEEEETTSC--EEEEEC--CC-C-SCEEEEEECTTSSEEEEEETT-----CCEEEEETTTT
T ss_pred CCCEEEEEeCCC------eEEEEeCCCC--eeeecc--CC-C-ccEEEEEECCCCCEEEEEecC-----CeEEEEECCCC
Confidence 455666666432 6888884332 333332 11 1 111222222233455566543 35788998876
Q ss_pred CCceEeccCCCCCC------------CCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCC
Q 042793 320 PPTWREISGLAPPL------------PRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPS 387 (545)
Q Consensus 320 ~~~W~~~~~~~~~~------------~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~ 387 (545)
.-...-...... .....+.+...++ .++.|+.+ ..+.+||+....... .+.. . .
T Consensus 182 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------g~i~~~d~~~~~~~~-~~~~--~--~ 247 (425)
T 1r5m_A 182 --TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPK------GAIFVYQITEKTPTG-KLIG--H--H 247 (425)
T ss_dssp --EEEEEECCC---------------CCCBSCCEEEETT-EEEEECGG------GCEEEEETTCSSCSE-EECC--C--S
T ss_pred --cEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCC------CeEEEEEcCCCceee-eecc--C--C
Confidence 333211110000 0002223333343 45666542 358999976442222 2211 1 1
Q ss_pred CCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 388 RLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 388 r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
..-.+++...++.+++.|+. ...+..||+.
T Consensus 248 ~~i~~~~~~~~~~~l~~~~~---------d~~i~i~d~~ 277 (425)
T 1r5m_A 248 GPISVLEFNDTNKLLLSASD---------DGTLRIWHGG 277 (425)
T ss_dssp SCEEEEEEETTTTEEEEEET---------TSCEEEECSS
T ss_pred CceEEEEECCCCCEEEEEcC---------CCEEEEEECC
Confidence 11233444444456666664 3568888877
No 156
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=93.42 E-value=8.5 Score=40.71 Aligned_cols=193 Identities=10% Similarity=0.071 Sum_probs=94.6
Q ss_pred ceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCC-----------cccCcEEEEecCCCCCceE-
Q 042793 258 DTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQ-----------GLLNDVFVLDLDAKPPTWR- 324 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~-----------~~~~~~~~yd~~t~~~~W~- 324 (545)
.++++|+.+. +........ ... ...+-. +++.||+. ..... .....++++++.+. ...
T Consensus 152 ~i~v~d~~tg--~~~~~~~~~---~~~-~~~~wspDg~~l~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~--~~~~ 222 (710)
T 2xdw_A 152 TIKFMKVDGA--KELPDVLER---VKF-SCMAWTHDGKGMFYN-AYPQQDGKSDGTETSTNLHQKLYYHVLGTD--QSED 222 (710)
T ss_dssp EEEEEETTTT--EEEEEEEEE---ECS-CCEEECTTSSEEEEE-ECCCCSSCCSSSCCCCCCCCEEEEEETTSC--GGGC
T ss_pred EEEEEECCCC--CCCcccccC---ccc-ceEEEEeCCCEEEEE-EECCccccccccccccCCCCEEEEEECCCC--cccc
Confidence 7999999887 665432111 111 122222 44445444 33322 22456899999887 422
Q ss_pred -eccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCC------CCCceEEecCCCCCCCCCCcEEEEE
Q 042793 325 -EISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSM------EKPVWREIPVTWTPPSRLGHTLSVY 396 (545)
Q Consensus 325 -~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~------~~~~W~~~~~~~~p~~r~~~~~~~~ 396 (545)
.+.... ..+......... +|+.|++..... ....++++.+|+.. ....+..+... ... .......
T Consensus 223 ~~v~~~~-~~~~~~~~~~~SpDg~~l~~~~~~~--~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~--~~~--~~~~~s~ 295 (710)
T 2xdw_A 223 ILCAEFP-DEPKWMGGAELSDDGRYVLLSIREG--CDPVNRLWYCDLQQESNGITGILKWVKLIDN--FEG--EYDYVTN 295 (710)
T ss_dssp EEEECCT-TCTTCEEEEEECTTSCEEEEEEECS--SSSCCEEEEEEGGGSSSSSCSSCCCEEEECS--SSS--CEEEEEE
T ss_pred eEEeccC-CCCeEEEEEEEcCCCCEEEEEEEcc--CCCccEEEEEECcccccccCCccceEEeeCC--CCc--EEEEEec
Confidence 222210 112222222222 454455443221 11246799999764 22257776531 111 1222333
Q ss_pred CCcEEEEEcccCCCCCCccccCcEEEEeCCCCC-CceEEeecCCCCCCCCCCCCCCCCCcceEEEEec-CCEEEEEcCcC
Q 042793 397 GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEE-PCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLP-GGRILIFGGSV 474 (545)
Q Consensus 397 ~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~-~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~ 474 (545)
+++.||+.+..... ...|+.+|+.+.. ..|+.+... .....-..+... ++.+++....+
T Consensus 296 dg~~l~~~s~~~~~------~~~l~~~d~~~~~~~~~~~l~~~-------------~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 296 EGTVFTFKTNRHSP------NYRLINIDFTDPEESKWKVLVPE-------------HEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp ETTEEEEEECTTCT------TCEEEEEETTSCCGGGCEEEECC-------------CSSCEEEEEEEETTTEEEEEEEET
T ss_pred cCCEEEEEECCCCC------CCEEEEEeCCCCCcccceeccCC-------------CCCCeEEEEEEEcCCEEEEEEEEC
Confidence 45588888653221 3679999987321 158877533 121112223333 67777765433
Q ss_pred CCCCCCCceEEEcCC
Q 042793 475 AGLHSATQLYLLDPT 489 (545)
Q Consensus 475 ~~~~~~~~v~~~d~~ 489 (545)
....++++|+.
T Consensus 357 ----g~~~l~~~~~~ 367 (710)
T 2xdw_A 357 ----VKNTLQLHDLA 367 (710)
T ss_dssp ----TEEEEEEEETT
T ss_pred ----CEEEEEEEECC
Confidence 23568999984
No 157
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=93.41 E-value=5.7 Score=38.04 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=14.8
Q ss_pred CCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 464 GGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 464 ~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
++++++.|+.+ ..+.+||+.
T Consensus 302 ~~~~l~~~~~d------g~i~iwd~~ 321 (397)
T 1sq9_A 302 SGETLCSAGWD------GKLRFWDVK 321 (397)
T ss_dssp SSSEEEEEETT------SEEEEEETT
T ss_pred CCCEEEEEeCC------CeEEEEEcC
Confidence 56777777743 568999986
No 158
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=93.38 E-value=5.3 Score=37.58 Aligned_cols=63 Identities=10% Similarity=-0.085 Sum_probs=33.8
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
++++++.|+.+. .+.++|+.+. +-...- ........+..+ .+++.++.|+.+ ..+.+||+.+
T Consensus 43 ~~~~l~~~~~dg------~i~vwd~~~~--~~~~~~----~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~ 105 (369)
T 3zwl_B 43 EGDLLFSCSKDS------SASVWYSLNG--ERLGTL----DGHTGTIWSIDVDCFTKYCVTGSAD-----YSIKLWDVSN 105 (369)
T ss_dssp TSCEEEEEESSS------CEEEEETTTC--CEEEEE----CCCSSCEEEEEECTTSSEEEEEETT-----TEEEEEETTT
T ss_pred CCCEEEEEeCCC------EEEEEeCCCc--hhhhhh----hhcCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCC
Confidence 456666666432 6889998765 332211 111111222233 233566666643 3688999987
Q ss_pred C
Q 042793 319 K 319 (545)
Q Consensus 319 ~ 319 (545)
.
T Consensus 106 ~ 106 (369)
T 3zwl_B 106 G 106 (369)
T ss_dssp C
T ss_pred C
Confidence 7
No 159
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=93.33 E-value=5.5 Score=37.64 Aligned_cols=152 Identities=13% Similarity=0.146 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccce-eEEEEcCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGH-TLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
++++++.|+.+ ..+.+||+.+. +++.+.. +....... +++...+++.++.|+.+ ..+.+||+.+
T Consensus 19 ~~~~l~~~~~d------~~v~i~~~~~~--~~~~~~~--~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~ 83 (372)
T 1k8k_C 19 DRTQIAICPNN------HEVHIYEKSGN--KWVQVHE--LKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWTLKG 83 (372)
T ss_dssp TSSEEEEECSS------SEEEEEEEETT--EEEEEEE--EECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEEEET
T ss_pred CCCEEEEEeCC------CEEEEEeCCCC--cEEeeee--ecCCCCcccEEEEeCCCCEEEEEcCC-----CeEEEEECCC
Confidence 45566677643 27888998876 5544331 11111112 22223233566666643 3588899988
Q ss_pred CCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEEC
Q 042793 319 KPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYG 397 (545)
Q Consensus 319 ~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 397 (545)
. .+....... .... .-.++.+ .++.+++.|+.+ ..+.+||+.... .|........+....-.+++...
T Consensus 84 ~--~~~~~~~~~-~~~~-~v~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 84 R--TWKPTLVIL-RINR-AARCVRWAPNEKKFAVGSGS------RVISICYFEQEN-DWWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp T--EEEEEEECC-CCSS-CEEEEEECTTSSEEEEEETT------SSEEEEEEETTT-TEEEEEEECTTCCSCEEEEEECT
T ss_pred C--eeeeeEEee-cCCC-ceeEEEECCCCCEEEEEeCC------CEEEEEEecCCC-cceeeeeeecccCCCeeEEEEcC
Confidence 7 665433211 1111 1122222 234566666542 346777765543 23222110011112223333344
Q ss_pred CcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 398 GRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 398 ~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
++.+++.|+. ...+..||+.
T Consensus 153 ~~~~l~~~~~---------dg~i~~~d~~ 172 (372)
T 1k8k_C 153 NSVLLAAGSC---------DFKCRIFSAY 172 (372)
T ss_dssp TSSEEEEEET---------TSCEEEEECC
T ss_pred CCCEEEEEcC---------CCCEEEEEcc
Confidence 4466777764 2567777853
No 160
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=93.30 E-value=8.3 Score=39.60 Aligned_cols=192 Identities=16% Similarity=0.086 Sum_probs=95.2
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceE-EeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQ-HVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLD 317 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~ 317 (545)
++.+||....+ +.+.++|..+. +-. .++ .+..-|.++.. +++++|+.+. .+.+.+||+.
T Consensus 166 ~~~~~V~~~~~------~~V~viD~~t~--~v~~~i~-----~g~~p~~v~~SpDGr~lyv~~~------dg~V~viD~~ 226 (567)
T 1qks_A 166 ENLFSVTLRDA------GQIALIDGSTY--EIKTVLD-----TGYAVHISRLSASGRYLFVIGR------DGKVNMIDLW 226 (567)
T ss_dssp GGEEEEEETTT------TEEEEEETTTC--CEEEEEE-----CSSCEEEEEECTTSCEEEEEET------TSEEEEEETT
T ss_pred CceEEEEeCCC------CeEEEEECCCC--eEEEEEe-----CCCCccceEECCCCCEEEEEcC------CCeEEEEECC
Confidence 45777765432 38999999876 332 332 22222443332 5667887652 2469999995
Q ss_pred --CCCCceEeccCCCCCCCCccceEEE----EcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceE-EecCCCC------
Q 042793 318 --AKPPTWREISGLAPPLPRSWHSSCT----LDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWR-EIPVTWT------ 384 (545)
Q Consensus 318 --t~~~~W~~~~~~~~~~~r~~~~~~~----~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~-~~~~~~~------ 384 (545)
+.. .=.+++.. ..|| +.+.. .+|+.+|+..-. .+.+.++|.. +.+-. .++...+
T Consensus 227 ~~t~~-~v~~i~~G--~~P~--~ia~s~~~~pDGk~l~v~n~~------~~~v~ViD~~--t~~~~~~i~~~~~~~~~~~ 293 (567)
T 1qks_A 227 MKEPT-TVAEIKIG--SEAR--SIETSKMEGWEDKYAIAGAYW------PPQYVIMDGE--TLEPKKIQSTRGMTYDEQE 293 (567)
T ss_dssp SSSCC-EEEEEECC--SEEE--EEEECCSTTCTTTEEEEEEEE------TTEEEEEETT--TCCEEEEEECCEECTTTCC
T ss_pred CCCCc-EeEEEecC--CCCc--eeEEccccCCCCCEEEEEEcc------CCeEEEEECC--CCcEEEEEecccccccccc
Confidence 441 11233322 2233 22222 156677776432 2457888843 22222 2222111
Q ss_pred --CCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEe
Q 042793 385 --PPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSL 462 (545)
Q Consensus 385 --p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~ 462 (545)
|.+|.........+..+++.-. ....++.+|.. ..+...+... +..++.|.....
T Consensus 294 ~~p~~rva~i~~s~~~~~~vv~~~---------~~g~v~~vd~~--~~~~~~v~~i------------~~~~~~~d~~~~ 350 (567)
T 1qks_A 294 YHPEPRVAAILASHYRPEFIVNVK---------ETGKILLVDYT--DLNNLKTTEI------------SAERFLHDGGLD 350 (567)
T ss_dssp EESCCCEEEEEECSSSSEEEEEET---------TTTEEEEEETT--CSSEEEEEEE------------ECCSSEEEEEEC
T ss_pred ccCCCceEEEEEcCCCCEEEEEec---------CCCeEEEEecC--CCccceeeee------------eccccccCceEC
Confidence 2233332222222323333211 14788888987 5445444433 334455544444
Q ss_pred cCCEEEEEcCcCCCCCCCCceEEEcCCCC
Q 042793 463 PGGRILIFGGSVAGLHSATQLYLLDPTEE 491 (545)
Q Consensus 463 ~~~~l~v~GG~~~~~~~~~~v~~~d~~~~ 491 (545)
.+++.+++.-. ..+.|.++|+++.
T Consensus 351 pdgr~~~va~~-----~sn~V~ViD~~t~ 374 (567)
T 1qks_A 351 GSHRYFITAAN-----ARNKLVVIDTKEG 374 (567)
T ss_dssp TTSCEEEEEEG-----GGTEEEEEETTTT
T ss_pred CCCCEEEEEeC-----CCCeEEEEECCCC
Confidence 45554433221 2477999999743
No 161
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=93.28 E-value=6.6 Score=38.38 Aligned_cols=202 Identities=14% Similarity=0.155 Sum_probs=100.3
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
+++.+++++.+.. ...++++|+.+. +...+. ..+. ...+.+.. ++++|++.+..++ ...++++|+.+
T Consensus 189 dg~~la~~s~~~~---~~~i~~~d~~tg--~~~~l~--~~~~--~~~~~~~spdg~~la~~~~~~g---~~~i~~~d~~~ 256 (415)
T 2hqs_A 189 DGSKLAYVTFESG---RSALVIQTLANG--AVRQVA--SFPR--HNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLAS 256 (415)
T ss_dssp TSSEEEEEECTTS---SCEEEEEETTTC--CEEEEE--CCSS--CEEEEEECTTSSEEEEEECTTS---SCEEEEEETTT
T ss_pred CCCEEEEEEecCC---CcEEEEEECCCC--cEEEee--cCCC--cccCEEEcCCCCEEEEEEecCC---CceEEEEECCC
Confidence 4444555543321 247999999887 665553 2211 11222222 4555665554332 24699999998
Q ss_pred CCCceEeccCCCCCCCCccceEEEE--cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEE
Q 042793 319 KPPTWREISGLAPPLPRSWHSSCTL--DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVY 396 (545)
Q Consensus 319 ~~~~W~~~~~~~~~~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 396 (545)
. ....+... . . ......+ ++..|++.+.. + + ...++.+|+... .-..+.. ......+++..
T Consensus 257 ~--~~~~l~~~--~-~--~~~~~~~spdg~~l~~~s~~-~-g--~~~i~~~d~~~~--~~~~l~~----~~~~~~~~~~s 319 (415)
T 2hqs_A 257 G--QIRQVTDG--R-S--NNTEPTWFPDSQNLAFTSDQ-A-G--RPQVYKVNINGG--APQRITW----EGSQNQDADVS 319 (415)
T ss_dssp C--CEEECCCC--S-S--CEEEEEECTTSSEEEEEECT-T-S--SCEEEEEETTSS--CCEECCC----SSSEEEEEEEC
T ss_pred C--CEEeCcCC--C-C--cccceEECCCCCEEEEEECC-C-C--CcEEEEEECCCC--CEEEEec----CCCcccCeEEC
Confidence 8 66655432 1 1 1122233 44445544322 1 1 236888896533 4344332 11122223333
Q ss_pred CCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCC
Q 042793 397 GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAG 476 (545)
Q Consensus 397 ~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 476 (545)
.+++.+++++.... ...++.+|+. +.+...+... . .........+++.+++++.+.+
T Consensus 320 pdG~~l~~~~~~~g------~~~i~~~d~~--~~~~~~l~~~--------------~-~~~~~~~spdg~~l~~~s~~~~ 376 (415)
T 2hqs_A 320 SDGKFMVMVSSNGG------QQHIAKQDLA--TGGVQVLSST--------------F-LDETPSLAPNGTMVIYSSSQGM 376 (415)
T ss_dssp TTSSEEEEEEECSS------CEEEEEEETT--TCCEEECCCS--------------S-SCEEEEECTTSSEEEEEEEETT
T ss_pred CCCCEEEEEECcCC------ceEEEEEECC--CCCEEEecCC--------------C-CcCCeEEcCCCCEEEEEEcCCC
Confidence 33344444443211 2579999998 5566554321 1 1122233346777777765422
Q ss_pred CCCCCceEEEcCCCCCCceEEe
Q 042793 477 LHSATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 477 ~~~~~~v~~~d~~~~~~~W~~~ 498 (545)
...+|.+|++ ......+
T Consensus 377 ---~~~l~~~d~~--g~~~~~l 393 (415)
T 2hqs_A 377 ---GSVLNLVSTD--GRFKARL 393 (415)
T ss_dssp ---EEEEEEEETT--SCCEEEC
T ss_pred ---ccEEEEEECC--CCcEEEe
Confidence 2479999986 3344444
No 162
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=93.16 E-value=9.7 Score=40.82 Aligned_cols=154 Identities=11% Similarity=0.080 Sum_probs=81.6
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCC---CCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEec
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSS---PPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDL 316 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~---~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 316 (545)
++.||+-.. .-+++||+.+. +|+...... ++. ..-.+++.-.++.|++.. .. +.+++||+
T Consensus 460 ~g~lwigt~--------~Gl~~~~~~~~--~~~~~~~~~~~~~~~-~~i~~i~~d~~g~lWigt-~~-----~Gl~~~~~ 522 (781)
T 3v9f_A 460 NKKIWIGTH--------AGVFVIDLASK--KVIHHYDTSNSQLLE-NFVRSIAQDSEGRFWIGT-FG-----GGVGIYTP 522 (781)
T ss_dssp TSEEEEEET--------TEEEEEESSSS--SCCEEECTTTSSCSC-SCEEEEEECTTCCEEEEE-SS-----SCEEEECT
T ss_pred CCCEEEEEC--------CceEEEeCCCC--eEEecccCccccccc-ceeEEEEEcCCCCEEEEE-cC-----CCEEEEeC
Confidence 456776432 26899999887 776554211 111 111222222334676643 11 34889999
Q ss_pred CCCCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcE-EEEecCCCCCceEEecC-CCCCCCCCCcEE
Q 042793 317 DAKPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDT-FLLDLSMEKPVWREIPV-TWTPPSRLGHTL 393 (545)
Q Consensus 317 ~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~-~~~d~~~~~~~W~~~~~-~~~p~~r~~~~~ 393 (545)
.++ +++.+.... ..+-..-.+... .++.+++... +-+ ++||.. +.++..... .++|.... .++
T Consensus 523 ~~~--~~~~~~~~~-~l~~~~i~~i~~d~~g~lWi~T~--------~Glv~~~d~~--~~~~~~~~~~~gl~~~~i-~~i 588 (781)
T 3v9f_A 523 DMQ--LVRKFNQYE-GFCSNTINQIYRSSKGQMWLATG--------EGLVCFPSAR--NFDYQVFQRKEGLPNTHI-RAI 588 (781)
T ss_dssp TCC--EEEEECTTT-TCSCSCEEEEEECTTSCEEEEET--------TEEEEESCTT--TCCCEEECGGGTCSCCCC-CEE
T ss_pred CCC--eEEEccCCC-CCCCCeeEEEEECCCCCEEEEEC--------CCceEEECCC--CCcEEEccccCCCCCceE-EEE
Confidence 988 888765321 111111112222 2446777432 125 778844 446665543 23443332 455
Q ss_pred EEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeec
Q 042793 394 SVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTG 437 (545)
Q Consensus 394 ~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~ 437 (545)
+.-.++.|++.+. +.+.+||+. +.+++....
T Consensus 589 ~~d~~g~lW~~t~-----------~Gl~~~~~~--~~~~~~~~~ 619 (781)
T 3v9f_A 589 SEDKNGNIWASTN-----------TGISCYITS--KKCFYTYDH 619 (781)
T ss_dssp EECSSSCEEEECS-----------SCEEEEETT--TTEEEEECG
T ss_pred EECCCCCEEEEcC-----------CceEEEECC--CCceEEecc
Confidence 4444557887642 568899998 777776643
No 163
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=92.95 E-value=7.1 Score=41.12 Aligned_cols=193 Identities=13% Similarity=0.018 Sum_probs=87.9
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCCCccceEEEE--cCCEEEEEcCCCCCCCccCcEEEEecCCCCC-ceEEecCCCCC
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL--DGTKLIVSGGCADSGVLLSDTFLLDLSMEKP-VWREIPVTWTP 385 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~-~W~~~~~~~~p 385 (545)
..++++|+.+. .-..+... .........+.+ +++.+++.. .+ .......++.+|+. +. ....+......
T Consensus 235 ~~l~~~d~~~~--~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~-~~-~~~~~~~v~~~d~~--~g~~~~~~~~~~~~ 306 (706)
T 2z3z_A 235 VTVGIYHLATG--KTVYLQTG--EPKEKFLTNLSWSPDENILYVAE-VN-RAQNECKVNAYDAE--TGRFVRTLFVETDK 306 (706)
T ss_dssp EEEEEEETTTT--EEEECCCC--SCTTCEEEEEEECTTSSEEEEEE-EC-TTSCEEEEEEEETT--TCCEEEEEEEEECS
T ss_pred eEEEEEECCCC--ceEeeccC--CCCceeEeeEEEECCCCEEEEEE-eC-CCCCeeEEEEEECC--CCceeeEEEEccCC
Confidence 56899999887 55444321 111111122223 444455432 21 11223468888864 33 44444211011
Q ss_pred CCC-CCcEEEEEC--CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEe
Q 042793 386 PSR-LGHTLSVYG--GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSL 462 (545)
Q Consensus 386 ~~r-~~~~~~~~~--~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~ 462 (545)
... ....++... ++++++.+... + ...+|.+|.. ......+... ... ....+.+
T Consensus 307 ~~~~~~~~~~~sp~~dg~~l~~~~~~--g-----~~~l~~~~~~--~~~~~~l~~~------------~~~--v~~~~~~ 363 (706)
T 2z3z_A 307 HYVEPLHPLTFLPGSNNQFIWQSRRD--G-----WNHLYLYDTT--GRLIRQVTKG------------EWE--VTNFAGF 363 (706)
T ss_dssp SCCCCCSCCEECTTCSSEEEEEECTT--S-----SCEEEEEETT--SCEEEECCCS------------SSC--EEEEEEE
T ss_pred CeECccCCceeecCCCCEEEEEEccC--C-----ccEEEEEECC--CCEEEecCCC------------CeE--EEeeeEE
Confidence 000 012223333 44665555432 1 4778999866 5555555321 111 1111222
Q ss_pred -cCC-EEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceee
Q 042793 463 -PGG-RILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHEL 540 (545)
Q Consensus 463 -~~~-~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l 540 (545)
.++ .|++.+..+ ......+|.+|++ +...+.+.. . ...++.....+++.+++...+... ..++|++
T Consensus 364 spdg~~l~~~~~~~--~~~~~~l~~~d~~--~~~~~~l~~-----~-~~~~~~~~spdg~~l~~~~~~~~~--p~~i~l~ 431 (706)
T 2z3z_A 364 DPKGTRLYFESTEA--SPLERHFYCIDIK--GGKTKDLTP-----E-SGMHRTQLSPDGSAIIDIFQSPTV--PRKVTVT 431 (706)
T ss_dssp CTTSSEEEEEESSS--CTTCBEEEEEETT--CCCCEESCC-----S-SSEEEEEECTTSSEEEEEEECSSC--SCEEEEE
T ss_pred cCCCCEEEEEecCC--CCceEEEEEEEcC--CCCceeccC-----C-CceEEEEECCCCCEEEEEecCCCC--CcEEEEE
Confidence 244 455554432 1123578999986 344555521 1 112333333456656665433322 3567777
Q ss_pred eecc
Q 042793 541 SLVS 544 (545)
Q Consensus 541 ~l~~ 544 (545)
|++.
T Consensus 432 d~~~ 435 (706)
T 2z3z_A 432 NIGK 435 (706)
T ss_dssp ESSS
T ss_pred ECCC
Confidence 7653
No 164
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=92.76 E-value=7.4 Score=37.59 Aligned_cols=104 Identities=10% Similarity=0.050 Sum_probs=51.2
Q ss_pred CCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCC
Q 042793 293 GSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSME 372 (545)
Q Consensus 293 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 372 (545)
++..++.|+.+ ..+.+||+.+. .-...-.. . ...-.+.+...++.+++.|+.+ ..+.+||+...
T Consensus 108 ~~~~l~~~~~d-----g~i~iwd~~~~--~~~~~~~~--h-~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~~ 171 (420)
T 3vl1_A 108 QMRRFILGTTE-----GDIKVLDSNFN--LQREIDQA--H-VSEITKLKFFPSGEALISSSQD------MQLKIWSVKDG 171 (420)
T ss_dssp SSCEEEEEETT-----SCEEEECTTSC--EEEEETTS--S-SSCEEEEEECTTSSEEEEEETT------SEEEEEETTTC
T ss_pred CCCEEEEEECC-----CCEEEEeCCCc--ceeeeccc--c-cCccEEEEECCCCCEEEEEeCC------CeEEEEeCCCC
Confidence 33567777654 36889998876 33322111 1 1111122222234566666642 35888997644
Q ss_pred CCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 373 KPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 373 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.... .+.. . ...-.+++...++.+++.|+.+ ..+..+|+.
T Consensus 172 ~~~~-~~~~--h--~~~v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~ 211 (420)
T 3vl1_A 172 SNPR-TLIG--H--RATVTDIAIIDRGRNVLSASLD---------GTIRLWECG 211 (420)
T ss_dssp CCCE-EEEC--C--SSCEEEEEEETTTTEEEEEETT---------SCEEEEETT
T ss_pred cCce-EEcC--C--CCcEEEEEEcCCCCEEEEEcCC---------CcEEEeECC
Confidence 3222 2221 1 1112233444444566666642 567778887
No 165
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=92.59 E-value=3.7 Score=38.58 Aligned_cols=194 Identities=11% Similarity=0.096 Sum_probs=88.5
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcC----CEEEEEcCCCCCcccCcEEEEec
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNG----SHLVVFGGCGRQGLLNDVFVLDL 316 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~yd~ 316 (545)
..+++.|+.+.. -..+.++|+.+. +...+..... .....++.+.. +.+++.|+.+ ..+.+||.
T Consensus 31 ~~l~~~~s~~~~---d~~v~iw~~~~~--~~~~~~~~~~---~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~ 97 (357)
T 3i2n_A 31 AKFVTMGNFARG---TGVIQLYEIQHG--DLKLLREIEK---AKPIKCGTFGATSLQQRYLATGDFG-----GNLHIWNL 97 (357)
T ss_dssp SEEEEEEC--CC---CEEEEEEEECSS--SEEEEEEEEE---SSCEEEEECTTCCTTTCCEEEEETT-----SCEEEECT
T ss_pred ceEEEecCccCC---CcEEEEEeCCCC--cccceeeecc---cCcEEEEEEcCCCCCCceEEEecCC-----CeEEEEeC
Confidence 366667754110 126888888876 5443221011 11122233322 2566666644 35888998
Q ss_pred CCCCCceEeccCCCCCCCCccceEEEE------cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCC
Q 042793 317 DAKPPTWREISGLAPPLPRSWHSSCTL------DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLG 390 (545)
Q Consensus 317 ~t~~~~W~~~~~~~~~~~r~~~~~~~~------~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~ 390 (545)
.+....-..+... ..+. .+.... .++..++.|+.+ ..+.+||+.........+........+..
T Consensus 98 ~~~~~~~~~~~~~--~~~v--~~~~~~~~~~~s~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 98 EAPEMPVYSVKGH--KEII--NAIDGIGGLGIGEGAPEIVTGSRD------GTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TSCSSCSEEECCC--SSCE--EEEEEESGGGCC-CCCEEEEEETT------SCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCCCccEEEEEec--ccce--EEEeeccccccCCCccEEEEEeCC------CeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 8762111122211 1111 111110 123456666542 35888997654323444432111111122
Q ss_pred cEEEE----ECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEec---
Q 042793 391 HTLSV----YGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLP--- 463 (545)
Q Consensus 391 ~~~~~----~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~--- 463 (545)
.+++. ..++.+++.|+. ...+..||+. +.+-...... . ..-.++.+.
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~---------d~~i~i~d~~--~~~~~~~~~~------------~---~~v~~~~~~~~~ 221 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYD---------NGDIKLFDLR--NMALRWETNI------------K---NGVCSLEFDRKD 221 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEET---------TSEEEEEETT--TTEEEEEEEC------------S---SCEEEEEESCSS
T ss_pred EEEEEEeccCCCCCEEEEEcc---------CCeEEEEECc--cCceeeecCC------------C---CceEEEEcCCCC
Confidence 22221 123366666664 3678888987 4333222211 1 112333333
Q ss_pred -CCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 464 -GGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 464 -~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
++..++.|+.+ ..+.+||+.
T Consensus 222 ~~~~~l~~~~~d------g~i~i~d~~ 242 (357)
T 3i2n_A 222 ISMNKLVATSLE------GKFHVFDMR 242 (357)
T ss_dssp SSCCEEEEEEST------TEEEEEEEE
T ss_pred CCCCEEEEECCC------CeEEEEeCc
Confidence 46677777643 568888875
No 166
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=92.56 E-value=12 Score=39.48 Aligned_cols=200 Identities=12% Similarity=0.068 Sum_probs=98.2
Q ss_pred CceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCC-------CcccCcEEEEecCCCCCceEeccCC
Q 042793 257 NDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGR-------QGLLNDVFVLDLDAKPPTWREISGL 329 (545)
Q Consensus 257 ~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~-------~~~~~~~~~yd~~t~~~~W~~~~~~ 329 (545)
..++++|+.+. +..... .+..+....+-. +++.||+..-... ......++.+++.+.+..=..+...
T Consensus 155 ~~i~v~dl~tg--~~~~~~---~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~ 228 (693)
T 3iuj_A 155 REIHLMDVESK--QPLETP---LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA 228 (693)
T ss_dssp EEEEEEETTTC--SEEEEE---EEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC
T ss_pred EEEEEEECCCC--CCCccc---cCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec
Confidence 47999999987 654431 111111122223 5655655433211 0234568888887762111222222
Q ss_pred CCCC--CCccceEE-EEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcc
Q 042793 330 APPL--PRSWHSSC-TLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGG 406 (545)
Q Consensus 330 ~~~~--~r~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG 406 (545)
+. +....... .-++..+++..... ...++++.+|+......|..+... . ..........++.||+...
T Consensus 229 --~~~~~~~~~~~~~SpDg~~l~~~~~~~---~~~~~i~~~d~~~~~~~~~~l~~~--~--~~~~~~~~~~g~~l~~~t~ 299 (693)
T 3iuj_A 229 --IPAQHHRYVGATVTEDDRFLLISAANS---TSGNRLYVKDLSQENAPLLTVQGD--L--DADVSLVDNKGSTLYLLTN 299 (693)
T ss_dssp --SGGGCCSEEEEEECTTSCEEEEEEESS---SSCCEEEEEETTSTTCCCEEEECS--S--SSCEEEEEEETTEEEEEEC
T ss_pred --CCCCCeEEEEEEEcCCCCEEEEEEccC---CCCcEEEEEECCCCCCceEEEeCC--C--CceEEEEeccCCEEEEEEC
Confidence 11 22111222 22454454443221 122589999976554477777531 1 1112223334458988865
Q ss_pred cCCCCCCccccCcEEEEeCCCCC-CceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEE
Q 042793 407 LAKSGPLRFRSSDVFTMDLSEEE-PCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYL 485 (545)
Q Consensus 407 ~~~~~~~~~~~~~i~~~d~~~~~-~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~ 485 (545)
.... ...|+.+|+.+.. ..|+.+... ..... .+...++.|++..-.+ ....+++
T Consensus 300 ~~~~------~~~l~~~d~~~~~~~~~~~l~~~--------------~~~~~-~~s~~g~~lv~~~~~~----g~~~l~~ 354 (693)
T 3iuj_A 300 RDAP------NRRLVTVDAANPGPAHWRDLIPE--------------RQQVL-TVHSGSGYLFAEYMVD----ATARVEQ 354 (693)
T ss_dssp TTCT------TCEEEEEETTSCCGGGCEEEECC--------------CSSCE-EEEEETTEEEEEEEET----TEEEEEE
T ss_pred CCCC------CCEEEEEeCCCCCccccEEEecC--------------CCCEE-EEEEECCEEEEEEEEC----CeeEEEE
Confidence 4321 3689999987422 358877533 11111 4444366665543322 1357899
Q ss_pred EcCCCCCCceEEe
Q 042793 486 LDPTEEKPTWRIL 498 (545)
Q Consensus 486 ~d~~~~~~~W~~~ 498 (545)
+|++ ......+
T Consensus 355 ~d~~--g~~~~~l 365 (693)
T 3iuj_A 355 FDYE--GKRVREV 365 (693)
T ss_dssp ECTT--SCEEEEE
T ss_pred EECC--CCeeEEe
Confidence 9985 3334444
No 167
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=92.52 E-value=6 Score=37.90 Aligned_cols=112 Identities=17% Similarity=0.114 Sum_probs=52.2
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
++.+++.|+.+. .+.++|+.+. +-.... ..+.+-........ .+..+++.|+.+ ..+.+||+.+
T Consensus 111 ~~~~l~s~~~d~------~i~iwd~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~d~~~ 175 (408)
T 4a11_B 111 DTGMFTSSSFDK------TLKVWDTNTL--QTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRG-----PKVQLCDLKS 175 (408)
T ss_dssp CTTCEEEEETTS------EEEEEETTTT--EEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESS-----SSEEEEESSS
T ss_pred CCcEEEEEeCCC------eEEEeeCCCC--ccceec--cCCCceeeeEeecCCCCCcEEEEEcCC-----CeEEEEeCCC
Confidence 344666666432 6888898776 333221 12221111111111 122366666643 3689999987
Q ss_pred CCCceEeccCCCCCCCCccceEEEE--cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEE
Q 042793 319 KPPTWREISGLAPPLPRSWHSSCTL--DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWRE 378 (545)
Q Consensus 319 ~~~~W~~~~~~~~~~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~ 378 (545)
..... .+... ...-.++.+ ++..+++.|+.+ ..+.+||+.........
T Consensus 176 ~~~~~-~~~~~-----~~~v~~~~~~~~~~~ll~~~~~d------g~i~i~d~~~~~~~~~~ 225 (408)
T 4a11_B 176 GSCSH-ILQGH-----RQEILAVSWSPRYDYILATASAD------SRVKLWDVRRASGCLIT 225 (408)
T ss_dssp SCCCE-EECCC-----CSCEEEEEECSSCTTEEEEEETT------SCEEEEETTCSSCCSEE
T ss_pred cceee-eecCC-----CCcEEEEEECCCCCcEEEEEcCC------CcEEEEECCCCCccccc
Confidence 62221 11111 111122223 233367777643 24788887654333333
No 168
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=92.50 E-value=6.9 Score=36.54 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=37.1
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEE-eccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQH-VHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLD 317 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~-~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~ 317 (545)
++++|+.++.+ +.++++|+.+. +... +. .+....-+.++.. +++.+|+.+.. ...+++||+.
T Consensus 10 ~~~~~v~~~~~------~~v~~~d~~~~--~~~~~~~---~~~~~~~~~~~~s~dg~~~~v~~~~-----~~~i~~~d~~ 73 (349)
T 1jmx_B 10 GHEYMIVTNYP------NNLHVVDVASD--TVYKSCV---MPDKFGPGTAMMAPDNRTAYVLNNH-----YGDIYGIDLD 73 (349)
T ss_dssp TCEEEEEEETT------TEEEEEETTTT--EEEEEEE---CSSCCSSCEEEECTTSSEEEEEETT-----TTEEEEEETT
T ss_pred CCEEEEEeCCC------CeEEEEECCCC--cEEEEEe---cCCCCCCceeEECCCCCEEEEEeCC-----CCcEEEEeCC
Confidence 56778877643 37999999876 4432 22 1110011233332 44567777642 2468999998
Q ss_pred CC
Q 042793 318 AK 319 (545)
Q Consensus 318 t~ 319 (545)
+.
T Consensus 74 t~ 75 (349)
T 1jmx_B 74 TC 75 (349)
T ss_dssp TT
T ss_pred CC
Confidence 87
No 169
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=92.44 E-value=5.1 Score=38.68 Aligned_cols=110 Identities=9% Similarity=0.069 Sum_probs=50.0
Q ss_pred CCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEc--CCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 293 GSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLD--GTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 293 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
++++++.|+.+ ..+.+||+.+.......+........ .-.++.+. ++.+++.|+.+ ..+.+||+.
T Consensus 78 ~~~~l~~~~~d-----g~v~vw~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~~~d------g~v~iwd~~ 144 (416)
T 2pm9_A 78 NNKIIAGALDN-----GSLELYSTNEANNAINSMARFSNHSS--SVKTVKFNAKQDNVLASGGNN------GEIFIWDMN 144 (416)
T ss_dssp SSSCEEEEESS-----SCEEEECCSSTTSCCCEEEECCCSSS--CCCEEEECSSSTTBEEEECSS------SCEEBCBTT
T ss_pred CCCeEEEEccC-----CeEEEeecccccccccchhhccCCcc--ceEEEEEcCCCCCEEEEEcCC------CeEEEEECC
Confidence 33566666543 35888888772101112221110111 11122332 24667777643 347888875
Q ss_pred CCC------CceEEecCCCCCCCCCCcEEEEECC-cEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 371 MEK------PVWREIPVTWTPPSRLGHTLSVYGG-RKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 371 ~~~------~~W~~~~~~~~p~~r~~~~~~~~~~-~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
... .... +.. .......-.+++...+ +.+++.|+. ...+..+|+.
T Consensus 145 ~~~~~~~~~~~~~-~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~v~iwd~~ 196 (416)
T 2pm9_A 145 KCTESPSNYTPLT-PGQ-SMSSVDEVISLAWNQSLAHVFASAGS---------SNFASIWDLK 196 (416)
T ss_dssp TTSSCTTTCCCBC-CCC-SCCSSCCCCEEEECSSCTTEEEEESS---------SSCEEEEETT
T ss_pred CCccccccccccc-ccc-ccCCCCCeeEEEeCCCCCcEEEEEcC---------CCCEEEEECC
Confidence 442 1111 100 0111112223333333 367777764 3668888987
No 170
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=92.37 E-value=6 Score=38.13 Aligned_cols=109 Identities=15% Similarity=0.139 Sum_probs=51.1
Q ss_pred CEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCC----CccceEEEEc--CCEEEEEcCCCCCCCccCcEEEE
Q 042793 294 SHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLP----RSWHSSCTLD--GTKLIVSGGCADSGVLLSDTFLL 367 (545)
Q Consensus 294 ~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~----r~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 367 (545)
..+++.|+.+ ..+.+||+.+. +-...-.. ... ...-..+.+. +..+++.|+.+.. ...+.+|
T Consensus 178 ~~~l~~~~~d-----g~v~iwd~~~~--~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~ 245 (416)
T 2pm9_A 178 AHVFASAGSS-----NFASIWDLKAK--KEVIHLSY--TSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIW 245 (416)
T ss_dssp TTEEEEESSS-----SCEEEEETTTT--EEEEEECC--CCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEE
T ss_pred CcEEEEEcCC-----CCEEEEECCCC--CcceEEec--cccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEE
Confidence 3577777654 35899999887 43322111 110 1112223332 2346666654210 1257888
Q ss_pred ecCCCCCceEEecCCCCCCCCCCcEEEEEC-CcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 368 DLSMEKPVWREIPVTWTPPSRLGHTLSVYG-GRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 368 d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
|+.........+. ......-.+++... ++.+++.|+. ...+..||+.
T Consensus 246 d~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~l~s~~~---------dg~v~~wd~~ 293 (416)
T 2pm9_A 246 DLRNANTPLQTLN---QGHQKGILSLDWCHQDEHLLLSSGR---------DNTVLLWNPE 293 (416)
T ss_dssp ETTSTTSCSBCCC---SCCSSCEEEEEECSSCSSCEEEEES---------SSEEEEECSS
T ss_pred eCCCCCCCcEEee---cCccCceeEEEeCCCCCCeEEEEeC---------CCCEEEeeCC
Confidence 8654311111111 01111112333332 4467777765 2568888887
No 171
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.30 E-value=12 Score=40.03 Aligned_cols=188 Identities=10% Similarity=0.013 Sum_probs=88.1
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEE-eccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQH-VHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~-~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
+.+++.|+.+ ..+.++|..+. +... +. ....+ . .+++...++..+++|+.+ ..+.+||..+.
T Consensus 25 ~~~la~~~~~------g~v~iwd~~~~--~~~~~~~--~~~~~-v-~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~ 87 (814)
T 3mkq_A 25 EPWVLTTLYS------GRVEIWNYETQ--VEVRSIQ--VTETP-V-RAGKFIARKNWIIVGSDD-----FRIRVFNYNTG 87 (814)
T ss_dssp SSEEEEEETT------SEEEEEETTTT--EEEEEEE--CCSSC-E-EEEEEEGGGTEEEEEETT-----SEEEEEETTTC
T ss_pred CCEEEEEeCC------CEEEEEECCCC--ceEEEEe--cCCCc-E-EEEEEeCCCCEEEEEeCC-----CeEEEEECCCC
Confidence 4455566532 26888998765 3322 22 11111 1 222222333566666643 46899999887
Q ss_pred CCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEEC-C
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYG-G 398 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~ 398 (545)
.....-.. .. ..-.+.+...++...+.|+.+ ..+.+||+.... ....... .....-.+++... +
T Consensus 88 --~~~~~~~~--~~-~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~-~~~~~~~---~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 88 --EKVVDFEA--HP-DYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNW-ALEQTFE---GHEHFVMCVAFNPKD 152 (814)
T ss_dssp --CEEEEEEC--CS-SCEEEEEECSSSSEEEEEETT------SEEEEEEGGGTS-EEEEEEE---CCSSCEEEEEEETTE
T ss_pred --cEEEEEec--CC-CCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCCc-eEEEEEc---CCCCcEEEEEEEcCC
Confidence 44321111 11 111112222233455555532 357888875321 2221111 1111122333443 4
Q ss_pred cEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEec--CCEEEEEcCcCCC
Q 042793 399 RKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLP--GGRILIFGGSVAG 476 (545)
Q Consensus 399 ~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~--~~~l~v~GG~~~~ 476 (545)
+.+++.|+. ...+..||+............ ......+..... ++.+++.|+.+
T Consensus 153 ~~~l~~~~~---------dg~v~vwd~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~~~l~~~~~d-- 207 (814)
T 3mkq_A 153 PSTFASGCL---------DRTVKVWSLGQSTPNFTLTTG--------------QERGVNYVDYYPLPDKPYMITASDD-- 207 (814)
T ss_dssp EEEEEEEET---------TSEEEEEETTCSSCSEEEECC--------------CTTCCCEEEECCSTTCCEEEEECTT--
T ss_pred CCEEEEEeC---------CCeEEEEECCCCcceeEEecC--------------CCCCEEEEEEEECCCCCEEEEEeCC--
Confidence 467777765 356888888633333332211 111111222222 56777777753
Q ss_pred CCCCCceEEEcCC
Q 042793 477 LHSATQLYLLDPT 489 (545)
Q Consensus 477 ~~~~~~v~~~d~~ 489 (545)
..+.+||+.
T Consensus 208 ----g~i~~~d~~ 216 (814)
T 3mkq_A 208 ----LTIKIWDYQ 216 (814)
T ss_dssp ----SEEEEEETT
T ss_pred ----CEEEEEECC
Confidence 568899986
No 172
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=92.26 E-value=3.5 Score=39.38 Aligned_cols=21 Identities=10% Similarity=0.181 Sum_probs=14.6
Q ss_pred CCEEEEEcCcCCCCCCCCceEEEcCCC
Q 042793 464 GGRILIFGGSVAGLHSATQLYLLDPTE 490 (545)
Q Consensus 464 ~~~l~v~GG~~~~~~~~~~v~~~d~~~ 490 (545)
++.+++.|+.+ ..|.+||+.+
T Consensus 238 ~~~~la~g~~d------~~i~~wd~~~ 258 (357)
T 4g56_B 238 KDDTFACGDET------GNVSLVNIKN 258 (357)
T ss_dssp STTEEEEEESS------SCEEEEESSC
T ss_pred ccceEEEeecc------cceeEEECCC
Confidence 35677777753 4688899863
No 173
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=92.01 E-value=9.2 Score=36.92 Aligned_cols=63 Identities=13% Similarity=0.029 Sum_probs=34.2
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
++.+++.|+.+. .+.++|+.+. +-.... ......-.+..+ .++++++.|+.+ ..+.+||+.+
T Consensus 108 ~~~~l~~~~~dg------~i~iwd~~~~--~~~~~~----~~h~~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~ 170 (420)
T 3vl1_A 108 QMRRFILGTTEG------DIKVLDSNFN--LQREID----QAHVSEITKLKFFPSGEALISSSQD-----MQLKIWSVKD 170 (420)
T ss_dssp SSCEEEEEETTS------CEEEECTTSC--EEEEET----TSSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTT
T ss_pred CCCEEEEEECCC------CEEEEeCCCc--ceeeec----ccccCccEEEEECCCCCEEEEEeCC-----CeEEEEeCCC
Confidence 456677776532 6888998765 333221 111111222233 233566666643 3688999987
Q ss_pred C
Q 042793 319 K 319 (545)
Q Consensus 319 ~ 319 (545)
.
T Consensus 171 ~ 171 (420)
T 3vl1_A 171 G 171 (420)
T ss_dssp C
T ss_pred C
Confidence 6
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=91.98 E-value=7 Score=35.50 Aligned_cols=225 Identities=11% Similarity=0.125 Sum_probs=107.5
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCC--ccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEec
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPG--RWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDL 316 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~--r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~ 316 (545)
++.+|+.+..+ ..+.+||+... ....+........ ..-..++.. .++++||.+.. ....+.+||.
T Consensus 40 ~g~l~v~~~~~------~~i~~~d~~g~--~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~----~~~~i~~~d~ 107 (286)
T 1q7f_A 40 QNDIIVADTNN------HRIQIFDKEGR--FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS----PTHQIQIYNQ 107 (286)
T ss_dssp TCCEEEEEGGG------TEEEEECTTSC--EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----GGCEEEEECT
T ss_pred CCCEEEEECCC------CEEEEECCCCc--EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC----CCCEEEEECC
Confidence 46788875432 26889998743 3333321111111 112333332 35688887632 1246888996
Q ss_pred CCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEE
Q 042793 317 DAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVY 396 (545)
Q Consensus 317 ~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 396 (545)
... .-..+... . ....+..+.-.++++|+..... +.+++||.+ ......+... .....-.+++.-
T Consensus 108 ~g~--~~~~~~~~--~-~~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~~--g~~~~~~~~~--~~~~~p~~i~~~ 172 (286)
T 1q7f_A 108 YGQ--FVRKFGAT--I-LQHPRGVTVDNKGRIIVVECKV------MRVIIFDQN--GNVLHKFGCS--KHLEFPNGVVVN 172 (286)
T ss_dssp TSC--EEEEECTT--T-CSCEEEEEECTTSCEEEEETTT------TEEEEECTT--SCEEEEEECT--TTCSSEEEEEEC
T ss_pred CCc--EEEEecCc--c-CCCceEEEEeCCCCEEEEECCC------CEEEEEcCC--CCEEEEeCCC--CccCCcEEEEEC
Confidence 544 33333221 1 1111222222344788875421 358889843 3333333211 111112344444
Q ss_pred CCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEe-cCCEEEEEcCcCC
Q 042793 397 GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSL-PGGRILIFGGSVA 475 (545)
Q Consensus 397 ~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~ 475 (545)
.++.+|+.+.. ...|++||+. ......+... +.. .....+++ .++++||....+
T Consensus 173 ~~g~l~v~~~~---------~~~i~~~~~~--g~~~~~~~~~---------g~~----~~p~~i~~d~~G~l~v~~~~~- 227 (286)
T 1q7f_A 173 DKQEIFISDNR---------AHCVKVFNYE--GQYLRQIGGE---------GIT----NYPIGVGINSNGEILIADNHN- 227 (286)
T ss_dssp SSSEEEEEEGG---------GTEEEEEETT--CCEEEEESCT---------TTS----CSEEEEEECTTCCEEEEECSS-
T ss_pred CCCCEEEEECC---------CCEEEEEcCC--CCEEEEEccC---------Ccc----CCCcEEEECCCCCEEEEeCCC-
Confidence 44588887543 3679999986 4433333211 111 11223333 367888876532
Q ss_pred CCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEc
Q 042793 476 GLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLG 525 (545)
Q Consensus 476 ~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~G 525 (545)
...|.+||++ ...-..+........ -.+.++..++++|+..
T Consensus 228 ----~~~i~~~~~~--g~~~~~~~~~~~~~~---~~~i~~~~~g~l~vs~ 268 (286)
T 1q7f_A 228 ----NFNLTIFTQD--GQLISALESKVKHAQ---CFDVALMDDGSVVLAS 268 (286)
T ss_dssp ----SCEEEEECTT--SCEEEEEEESSCCSC---EEEEEEETTTEEEEEE
T ss_pred ----CEEEEEECCC--CCEEEEEcccCCCCc---ceeEEECCCCcEEEEC
Confidence 1279999975 222223322111111 1233444567888874
No 175
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=91.92 E-value=9.2 Score=36.73 Aligned_cols=146 Identities=14% Similarity=0.028 Sum_probs=70.5
Q ss_pred EcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 291 VNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 291 ~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
..++ .+++|+.+ ..+.+||+.+...... +.. .. ..-.+.+...++.+++.|+.+ ..+.+||+.
T Consensus 215 ~~~~-~~~~~~~~-----g~i~~~d~~~~~~~~~-~~~---~~-~~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~ 277 (425)
T 1r5m_A 215 VDDD-KFVIPGPK-----GAIFVYQITEKTPTGK-LIG---HH-GPISVLEFNDTNKLLLSASDD------GTLRIWHGG 277 (425)
T ss_dssp EETT-EEEEECGG-----GCEEEEETTCSSCSEE-ECC---CS-SCEEEEEEETTTTEEEEEETT------SCEEEECSS
T ss_pred cCCC-EEEEEcCC-----CeEEEEEcCCCceeee-ecc---CC-CceEEEEECCCCCEEEEEcCC------CEEEEEECC
Confidence 3444 45666643 4689999987622222 111 11 111222233344566666532 348888865
Q ss_pred CCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCC
Q 042793 371 MEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIA 450 (545)
Q Consensus 371 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~ 450 (545)
....... +.. ....-.+++...++ +++.|+. ...+..||+. +.+-......
T Consensus 278 ~~~~~~~-~~~----~~~~i~~~~~~~~~-~l~~~~~---------d~~i~i~d~~--~~~~~~~~~~------------ 328 (425)
T 1r5m_A 278 NGNSQNC-FYG----HSQSIVSASWVGDD-KVISCSM---------DGSVRLWSLK--QNTLLALSIV------------ 328 (425)
T ss_dssp SBSCSEE-ECC----CSSCEEEEEEETTT-EEEEEET---------TSEEEEEETT--TTEEEEEEEC------------
T ss_pred CCccceE-ecC----CCccEEEEEECCCC-EEEEEeC---------CCcEEEEECC--CCcEeEeccc------------
Confidence 4322222 211 11122344455554 5566654 3678888987 4332222111
Q ss_pred CCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 451 PPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 451 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
... .-.+.....++++++.|+.+ +.+.+||+.
T Consensus 329 ~~~-~i~~~~~s~~~~~l~~~~~d------g~i~i~~~~ 360 (425)
T 1r5m_A 329 DGV-PIFAGRISQDGQKYAVAFMD------GQVNVYDLK 360 (425)
T ss_dssp TTC-CEEEEEECTTSSEEEEEETT------SCEEEEECH
T ss_pred CCc-cEEEEEEcCCCCEEEEEECC------CeEEEEECC
Confidence 111 11122223356777777743 468888885
No 176
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=91.88 E-value=14 Score=39.67 Aligned_cols=143 Identities=6% Similarity=0.007 Sum_probs=75.6
Q ss_pred ceEEEeCCCCCCceEEeccC----CCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCC--CC
Q 042793 258 DTFVLDLNSSNPEWQHVHVS----SPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGL--AP 331 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~~----~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~--~~ 331 (545)
-+++||+.+. +|+.+... .++.. .-.++..-.++.|++... +.+++||+.+. ++ .+... ..
T Consensus 472 Gl~~~~~~~~--~~~~~~~~~~~~~~~~~-~i~~i~~d~~g~lWigt~-------~Gl~~~~~~~~--~~-~~~~~~~~~ 538 (795)
T 4a2l_A 472 ALVRFNPEQR--SFTTIEKEKDGTPVVSK-QITTLFRDSHKRLWIGGE-------EGLSVFKQEGL--DI-QKASILPVS 538 (795)
T ss_dssp CEEEEETTTT--EEEECCBCTTCCBCCCC-CEEEEEECTTCCEEEEES-------SCEEEEEEETT--EE-EECCCSCSC
T ss_pred ceeEEeCCCC--eEEEccccccccccCCc-eEEEEEECCCCCEEEEeC-------CceEEEeCCCC--eE-EEecCCCCC
Confidence 5899999887 88876422 11111 112222223346777532 35899999888 77 43311 00
Q ss_pred CCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecC-CCCCCCCCCcEEEEECCcEEEEEcccCC
Q 042793 332 PLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPV-TWTPPSRLGHTLSVYGGRKILMFGGLAK 409 (545)
Q Consensus 332 ~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~-~~~p~~r~~~~~~~~~~~~lyi~GG~~~ 409 (545)
..+-....+... .++.+++... +-+++||.. +.++..... .++|... -.+++.-.++.|++.+.
T Consensus 539 ~l~~~~i~~i~~d~~g~lWigT~--------~Gl~~~d~~--~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~--- 604 (795)
T 4a2l_A 539 NVTKLFTNCIYEASNGIIWVGTR--------EGFYCFNEK--DKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTN--- 604 (795)
T ss_dssp GGGGSCEEEEEECTTSCEEEEES--------SCEEEEETT--TTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEET---
T ss_pred CCCCCeeEEEEECCCCCEEEEeC--------CCceeECCC--CCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEcC---
Confidence 011111112222 3446777432 127889954 557776543 2344322 23443444457887642
Q ss_pred CCCCccccCcEEEEeCCCCCCceEEeec
Q 042793 410 SGPLRFRSSDVFTMDLSEEEPCWRCVTG 437 (545)
Q Consensus 410 ~~~~~~~~~~i~~~d~~~~~~~W~~v~~ 437 (545)
+.+.+||+. +.+++....
T Consensus 605 --------~Gl~~~~~~--~~~~~~~~~ 622 (795)
T 4a2l_A 605 --------RGISCFNPE--TEKFRNFTE 622 (795)
T ss_dssp --------TEEEEEETT--TTEEEEECG
T ss_pred --------CceEEEcCC--CCcEEEcCC
Confidence 568889998 777776643
No 177
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=91.87 E-value=2.4 Score=40.54 Aligned_cols=152 Identities=11% Similarity=0.047 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
++++++.|+.+. .+.++|+.+. .|+.+. .+........+..+ .+++.++.|+.+ ..+.+||+.+
T Consensus 22 ~g~~l~~~~~d~------~i~iw~~~~~--~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~vwd~~~ 86 (377)
T 3dwl_C 22 QRTEFVTTTATN------QVELYEQDGN--GWKHAR--TFSDHDKIVTCVDWAPKSNRIVTCSQD-----RNAYVYEKRP 86 (377)
T ss_dssp SSSEEECCCSSS------CBCEEEEETT--EEEECC--CBCCCSSCEEEEEECTTTCCEEEEETT-----SSEEEC----
T ss_pred CCCEEEEecCCC------EEEEEEccCC--ceEEEE--EEecCCceEEEEEEeCCCCEEEEEeCC-----CeEEEEEcCC
Confidence 455666676532 5777887766 666543 22222222222333 233566666644 3588889887
Q ss_pred CCCc-eEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEE
Q 042793 319 KPPT-WREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVY 396 (545)
Q Consensus 319 ~~~~-W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 396 (545)
. . |....... .....-.++.+ .++++++.|+.+ ..+.+||+.... .|..+..-..+....-.+++..
T Consensus 87 ~--~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~-~~~~~~~~~~~h~~~v~~~~~~ 155 (377)
T 3dwl_C 87 D--GTWKQTLVLL--RLNRAATFVRWSPNEDKFAVGSGA------RVISVCYFEQEN-DWWVSKHLKRPLRSTILSLDWH 155 (377)
T ss_dssp ----CCCCEEECC--CCSSCEEEEECCTTSSCCEEEESS------SCEEECCC------CCCCEEECSSCCSCEEEEEEC
T ss_pred C--CceeeeeEec--ccCCceEEEEECCCCCEEEEEecC------CeEEEEEECCcc-cceeeeEeecccCCCeEEEEEc
Confidence 7 4 43332221 11111112222 233555666542 247778865432 1211111001112222333344
Q ss_pred CCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 397 GGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 397 ~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.++.+++.|+.+ ..+..||+.
T Consensus 156 ~~~~~l~~~~~d---------~~i~iwd~~ 176 (377)
T 3dwl_C 156 PNNVLLAAGCAD---------RKAYVLSAY 176 (377)
T ss_dssp TTSSEEEEEESS---------SCEEEEEEC
T ss_pred CCCCEEEEEeCC---------CEEEEEEEE
Confidence 444677777653 456677764
No 178
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=91.83 E-value=6.7 Score=37.45 Aligned_cols=146 Identities=15% Similarity=0.111 Sum_probs=73.6
Q ss_pred EEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEE-c-CCEEEEEcCCCCCCCccCcEEEEecCCC
Q 042793 295 HLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL-D-GTKLIVSGGCADSGVLLSDTFLLDLSME 372 (545)
Q Consensus 295 ~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 372 (545)
++++.|+.+ ..+.+||+.+. ........ ......-.++.+ . ++.+++.|+.+ ..+.++|+.
T Consensus 87 ~~l~s~~~d-----g~i~iwd~~~~--~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~-- 149 (383)
T 3ei3_B 87 TTVAVGSKG-----GDIILWDYDVQ--NKTSFIQG--MGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFS-- 149 (383)
T ss_dssp TEEEEEEBT-----SCEEEEETTST--TCEEEECC--CSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETT--
T ss_pred CEEEEEcCC-----CeEEEEeCCCc--ccceeeec--CCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECC--
Confidence 466666643 35888999877 54433221 011111122223 2 33566666542 357888965
Q ss_pred CCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCC
Q 042793 373 KPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPP 452 (545)
Q Consensus 373 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~ 452 (545)
+.....+... ......-.+++...++.+++.|+. ...+..+|+. ...-..+...
T Consensus 150 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~i~d~~--~~~~~~~~~h-------------- 203 (383)
T 3ei3_B 150 GSVIQVFAKT-DSWDYWYCCVDVSVSRQMLATGDS---------TGRLLLLGLD--GHEIFKEKLH-------------- 203 (383)
T ss_dssp SCEEEEEECC-CCSSCCEEEEEEETTTTEEEEEET---------TSEEEEEETT--SCEEEEEECS--------------
T ss_pred CCceEEEecc-CCCCCCeEEEEECCCCCEEEEECC---------CCCEEEEECC--CCEEEEeccC--------------
Confidence 3355444321 111112233444444466667664 3678888885 4433333321
Q ss_pred CCcceEEEEe-cCCE-EEEEcCcCCCCCCCCceEEEcCCC
Q 042793 453 PRLDHVAVSL-PGGR-ILIFGGSVAGLHSATQLYLLDPTE 490 (545)
Q Consensus 453 ~r~~~~~~~~-~~~~-l~v~GG~~~~~~~~~~v~~~d~~~ 490 (545)
...-.++.+ .++. +++.|+.+ ..+.+||+.+
T Consensus 204 -~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~ 236 (383)
T 3ei3_B 204 -KAKVTHAEFNPRCDWLMATSSVD------ATVKLWDLRN 236 (383)
T ss_dssp -SSCEEEEEECSSCTTEEEEEETT------SEEEEEEGGG
T ss_pred -CCcEEEEEECCCCCCEEEEEeCC------CEEEEEeCCC
Confidence 111223333 2455 77777754 5688899863
No 179
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=91.67 E-value=8.5 Score=40.77 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=33.5
Q ss_pred cCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeee
Q 042793 463 PGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSL 542 (545)
Q Consensus 463 ~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l 542 (545)
.+++.+++...+.. .....++.+|+. +.+...+...................++++++.+..++ ...||.+++
T Consensus 295 pDg~~l~~~~~~~~-~~~~~i~~~d~~--~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g----~~~l~~~~~ 367 (741)
T 2ecf_A 295 RDPQHLSFQRQSRD-QKKLDLVEVTLA--SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTG----FQHLYRIDS 367 (741)
T ss_dssp EETTEEEEEEEETT-SSEEEEEEEETT--TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTS----SCEEEEECS
T ss_pred CCCCEEEEEEeccc-CCeEEEEEEECC--CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCC----ccEEEEEcC
Confidence 45665555443211 124679999996 44444442211100000001222334566666554432 245777665
Q ss_pred c
Q 042793 543 V 543 (545)
Q Consensus 543 ~ 543 (545)
+
T Consensus 368 ~ 368 (741)
T 2ecf_A 368 K 368 (741)
T ss_dssp S
T ss_pred C
Confidence 4
No 180
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=91.59 E-value=11 Score=39.67 Aligned_cols=194 Identities=13% Similarity=0.134 Sum_probs=92.4
Q ss_pred CceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCC--------cccCcEEEEecCCCCCceEeccC
Q 042793 257 NDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQ--------GLLNDVFVLDLDAKPPTWREISG 328 (545)
Q Consensus 257 ~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~yd~~t~~~~W~~~~~ 328 (545)
..++++|+.+. +... . ...+.... ...+-..+++.++++..+.. .....++++++.+....=..+..
T Consensus 147 ~~i~v~dl~tg--~~~~-~-~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~ 221 (695)
T 2bkl_A 147 AVLHVIDVDSG--EWSK-V-DVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE 221 (695)
T ss_dssp CEEEEEETTTC--CBCS-S-CCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC
T ss_pred EEEEEEECCCC--CCcC-C-cccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe
Confidence 37999999887 4430 1 11111111 22232334455555554332 23456999999887211122322
Q ss_pred CCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEccc
Q 042793 329 LAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGL 407 (545)
Q Consensus 329 ~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~ 407 (545)
.. ..+....+.... +|..|++.... .. ..++++.++. .+..+..+... .. .....+..++ .+|+....
T Consensus 222 ~~-~~~~~~~~~~~SpDG~~l~~~~~~-~~--~~~~l~~~~~--~~~~~~~l~~~--~~--~~~~~~~~~g-~l~~~s~~ 290 (695)
T 2bkl_A 222 RT-GDPTTFLQSDLSRDGKYLFVYILR-GW--SENDVYWKRP--GEKDFRLLVKG--VG--AKYEVHAWKD-RFYVLTDE 290 (695)
T ss_dssp CC-CCTTCEEEEEECTTSCCEEEEEEE-TT--TEEEEEEECT--TCSSCEEEEEC--SS--CCEEEEEETT-EEEEEECT
T ss_pred cC-CCCEEEEEEEECCCCCEEEEEEeC-CC--CceEEEEEcC--CCCceEEeecC--CC--ceEEEEecCC-cEEEEECC
Confidence 20 111222222222 34344443322 11 2346777774 34477777531 11 1122233466 46665432
Q ss_pred CCCCCCccccCcEEEEeCCCCC-CceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEE
Q 042793 408 AKSGPLRFRSSDVFTMDLSEEE-PCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLL 486 (545)
Q Consensus 408 ~~~~~~~~~~~~i~~~d~~~~~-~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~ 486 (545)
. .. ...|+.+|+.+.. ..|+.+... .+...-..+...++++++....+ ....++.+
T Consensus 291 ~-~~-----~~~l~~~d~~~~~~~~~~~l~~~-------------~~~~~l~~~~~~~~~lv~~~~~d----g~~~l~~~ 347 (695)
T 2bkl_A 291 G-AP-----RQRVFEVDPAKPARASWKEIVPE-------------DSSASLLSVSIVGGHLSLEYLKD----ATSEVRVA 347 (695)
T ss_dssp T-CT-----TCEEEEEBTTBCSGGGCEEEECC-------------CSSCEEEEEEEETTEEEEEEEET----TEEEEEEE
T ss_pred C-CC-----CCEEEEEeCCCCCccCCeEEecC-------------CCCCeEEEEEEECCEEEEEEEEC----CEEEEEEE
Confidence 1 11 3689999987311 238877532 11111122333378887776543 24578889
Q ss_pred cCC
Q 042793 487 DPT 489 (545)
Q Consensus 487 d~~ 489 (545)
+++
T Consensus 348 ~~~ 350 (695)
T 2bkl_A 348 TLK 350 (695)
T ss_dssp ETT
T ss_pred eCC
Confidence 874
No 181
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=91.45 E-value=5.3 Score=39.21 Aligned_cols=105 Identities=13% Similarity=0.125 Sum_probs=51.5
Q ss_pred EEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEE--cCCEEEEEcCCCCCCCccCcEEEEecCCC
Q 042793 295 HLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL--DGTKLIVSGGCADSGVLLSDTFLLDLSME 372 (545)
Q Consensus 295 ~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 372 (545)
.+++.|+.++ .+.++|+.+. .-..+... ......-.++.+ .++.+++.|+.+ ..+.++|+..
T Consensus 133 ~~lasGs~dg-----~i~lWd~~~~--~~~~~~~~--~gH~~~V~~l~f~p~~~~~l~s~s~D------~~v~iwd~~~- 196 (435)
T 4e54_B 133 STVAVGSKGG-----DIMLWNFGIK--DKPTFIKG--IGAGGSITGLKFNPLNTNQFYASSME------GTTRLQDFKG- 196 (435)
T ss_dssp TCEEEEETTS-----CEEEECSSCC--SCCEEECC--CSSSCCCCEEEECSSCTTEEEEECSS------SCEEEEETTS-
T ss_pred CEEEEEeCCC-----EEEEEECCCC--CceeEEEc--cCCCCCEEEEEEeCCCCCEEEEEeCC------CEEEEeeccC-
Confidence 4666776543 5788888766 32222111 001111122333 233566666653 2477888653
Q ss_pred CCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 373 KPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 373 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.....+... ........++....++.+++.|+. ...|..+|+.
T Consensus 197 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~g~~---------dg~i~~wd~~ 239 (435)
T 4e54_B 197 -NILRVFASS-DTINIWFCSLDVSASSRMVVTGDN---------VGNVILLNMD 239 (435)
T ss_dssp -CEEEEEECC-SSCSCCCCCEEEETTTTEEEEECS---------SSBEEEEESS
T ss_pred -CceeEEecc-CCCCccEEEEEECCCCCEEEEEeC---------CCcEeeeccC
Confidence 344443321 111112223334444467777775 3567788876
No 182
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=91.39 E-value=11 Score=36.68 Aligned_cols=64 Identities=13% Similarity=0.191 Sum_probs=33.7
Q ss_pred cceEEEEecCCEEEEEcCcCCCCCC---CCceE---EEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcC
Q 042793 455 LDHVAVSLPGGRILIFGGSVAGLHS---ATQLY---LLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGG 526 (545)
Q Consensus 455 ~~~~~~~~~~~~l~v~GG~~~~~~~---~~~v~---~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG 526 (545)
..|++++..++++|..|-...+.-- ..+.. ..... .......+. .-..|++++..+++||.+|-
T Consensus 286 ~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~-~~~~v~~va-------~G~~hs~alt~~G~v~~wG~ 355 (406)
T 4d9s_A 286 WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP-DDQKVVQVS-------CGWRHTLAVTERNNVFAWGR 355 (406)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCG-GGCCEEEEE-------ECSSEEEEEETTSCEEEEEC
T ss_pred CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEecc-CCCcEEEEE-------eCCCeEEEEeCCCCEEEecC
Confidence 4577777778899999853321110 01110 00100 011222332 12357888887899999994
No 183
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=91.37 E-value=10 Score=36.18 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=15.4
Q ss_pred CCEEEEEcCcCCCCCCCCceEEEcCCC
Q 042793 464 GGRILIFGGSVAGLHSATQLYLLDPTE 490 (545)
Q Consensus 464 ~~~l~v~GG~~~~~~~~~~v~~~d~~~ 490 (545)
++++++.|+.+. ....+.+||+.+
T Consensus 244 ~~~~l~~~~~d~---~~g~i~i~d~~~ 267 (397)
T 1sq9_A 244 QGSLLAIAHDSN---SFGCITLYETEF 267 (397)
T ss_dssp STTEEEEEEEET---TEEEEEEEETTT
T ss_pred CCCEEEEEecCC---CCceEEEEECCC
Confidence 567777777431 115689999863
No 184
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=91.35 E-value=0.16 Score=49.38 Aligned_cols=152 Identities=10% Similarity=0.064 Sum_probs=62.3
Q ss_pred EEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEec
Q 042793 237 CAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDL 316 (545)
Q Consensus 237 ~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 316 (545)
++.++.||+.+.. ..++.+|..+....|+.-. ... . .+. .+.++++|+.|+.+ ..++++|.
T Consensus 6 ~v~~~~v~~gs~d-------g~v~a~d~~tG~~~W~~~~-~~~---~--s~p-~~~~g~~~v~~s~d-----g~l~a~d~ 66 (369)
T 2hz6_A 6 TLPETLLFVSTLD-------GSLHAVSKRTGSIKWTLKE-DPV---L--QVP-THVEEPAFLPDPND-----GSLYTLGS 66 (369)
T ss_dssp --CTTEEEEEETT-------SEEEEEETTTCCEEEEEEC-CCS---C--CCC------CCEEECTTT-----CCEEEC--
T ss_pred eeeCCEEEEEcCC-------CEEEEEECCCCCEEEEecC-CCc---e--ecc-eEcCCCEEEEeCCC-----CEEEEEEC
Confidence 3446667765432 2699999988877898532 111 1 121 23344677776433 35899999
Q ss_pred CCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEE
Q 042793 317 DAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVY 396 (545)
Q Consensus 317 ~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 396 (545)
.+....|+.-... +... ..+.+...++.+|+ |+. -..++.+|..+.+..|+.-... . . ..+.
T Consensus 67 ~tG~~~w~~~~~~--~~~~-~~sp~~~~~~~v~~-g~~------dg~v~a~D~~tG~~~w~~~~~~--~-~----~~~p- 128 (369)
T 2hz6_A 67 KNNEGLTKLPFTI--PELV-QASPCRSSDGILYM-GKK------QDIWYVIDLLTGEKQQTLSSAF--A-D----SLSP- 128 (369)
T ss_dssp ---CCSEECSCCH--HHHH-TTCSCC-----CCC-CEE------EEEEEEECCC--------------------------
T ss_pred CCCceeeeeeccC--cccc-ccCceEecCCEEEE-EeC------CCEEEEEECCCCcEEEEecCCC--c-c----cccc-
Confidence 8776667632111 0000 01111112434443 321 1358889987777778653321 0 0 1111
Q ss_pred CCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEe
Q 042793 397 GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCV 435 (545)
Q Consensus 397 ~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v 435 (545)
.++.+|+ |+. ...++.+|+.+....|+.-
T Consensus 129 ~~~~v~~-~~~---------dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 129 STSLLYL-GRT---------EYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp ----EEE-EEE---------EEEEECCCSSSSSCCCEEE
T ss_pred cCCEEEE-Eec---------CCEEEEEECCCCCEEEeEe
Confidence 3325554 432 2568888987655678753
No 185
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=91.17 E-value=10 Score=35.68 Aligned_cols=189 Identities=17% Similarity=0.167 Sum_probs=87.2
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCce-EEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEW-QHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W-~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
++++++.|+.+. .+.++|..+. .- ..++ .... .-.+++...++..++.||.+ +.+.+||+.+
T Consensus 66 d~~~l~s~s~Dg------~v~iWd~~~~--~~~~~~~---~~~~-~v~~~~~s~~~~~l~s~~~d-----~~v~iw~~~~ 128 (340)
T 1got_B 66 DSRLLLSASQDG------KLIIWDSYTT--NKVHAIP---LRSS-WVMTCAYAPSGNYVACGGLD-----NICSIYNLKT 128 (340)
T ss_dssp TSSEEEEEETTT------EEEEEETTTC--CEEEEEE---CSSS-CEEEEEECTTSSEEEEEETT-----CEEEEEETTT
T ss_pred CCCEEEEEeCCC------cEEEEECCCC--CcceEee---cCCc-cEEEEEECCCCCEEEEEeCC-----CeEEEEECcc
Confidence 345666666542 6888888765 22 2221 1111 11222222334566677754 3578888876
Q ss_pred CCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECC
Q 042793 319 KPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGG 398 (545)
Q Consensus 319 ~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 398 (545)
................. -.++....++. ++.|+.+ ..+.++|+.+. +-...-. .....-.+++...+
T Consensus 129 ~~~~~~~~~~~~~h~~~-v~~~~~~~~~~-l~s~s~d------~~i~~wd~~~~--~~~~~~~---~h~~~v~~~~~~~~ 195 (340)
T 1got_B 129 REGNVRVSRELAGHTGY-LSCCRFLDDNQ-IVTSSGD------TTCALWDIETG--QQTTTFT---GHTGDVMSLSLAPD 195 (340)
T ss_dssp CSBSCEEEEEEECCSSC-EEEEEEEETTE-EEEEETT------SCEEEEETTTT--EEEEEEC---CCSSCEEEEEECTT
T ss_pred CCCcceeEEEecCCCcc-EEEEEECCCCc-EEEEECC------CcEEEEECCCC--cEEEEEc---CCCCceEEEEECCC
Confidence 52122211111001111 11122233445 4444432 34788896533 3221111 11111223334444
Q ss_pred cEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEE-ecCCEEEEEcCcCCCC
Q 042793 399 RKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVS-LPGGRILIFGGSVAGL 477 (545)
Q Consensus 399 ~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~-~~~~~l~v~GG~~~~~ 477 (545)
+.+++.|+.+ ..+..+|+. +.+-... . ......-.++. ..++++++.|+.+
T Consensus 196 ~~~l~sg~~d---------~~v~~wd~~--~~~~~~~--~------------~~h~~~v~~v~~~p~~~~l~s~s~d--- 247 (340)
T 1got_B 196 TRLFVSGACD---------ASAKLWDVR--EGMCRQT--F------------TGHESDINAICFFPNGNAFATGSDD--- 247 (340)
T ss_dssp SSEEEEEETT---------SCEEEEETT--TCSEEEE--E------------CCCSSCEEEEEECTTSSEEEEEETT---
T ss_pred CCEEEEEeCC---------CcEEEEECC--CCeeEEE--E------------cCCcCCEEEEEEcCCCCEEEEEcCC---
Confidence 4677777753 567788887 4332221 1 00111112222 3367788888754
Q ss_pred CCCCceEEEcCC
Q 042793 478 HSATQLYLLDPT 489 (545)
Q Consensus 478 ~~~~~v~~~d~~ 489 (545)
..+.+||+.
T Consensus 248 ---~~v~iwd~~ 256 (340)
T 1got_B 248 ---ATCRLFDLR 256 (340)
T ss_dssp ---SCEEEEETT
T ss_pred ---CcEEEEECC
Confidence 468889986
No 186
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=91.08 E-value=9.9 Score=35.46 Aligned_cols=142 Identities=11% Similarity=0.128 Sum_probs=71.1
Q ss_pred EEEEEcCCCCCcccCcEEEEecCCCCCceE-eccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCC
Q 042793 295 HLVVFGGCGRQGLLNDVFVLDLDAKPPTWR-EISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEK 373 (545)
Q Consensus 295 ~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~-~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 373 (545)
.+++.|+.+ ..+.++|+.+. +-. .+... +.. ..+.+...+++.++.|+.+ ..+.+|++....
T Consensus 93 ~~l~s~s~D-----~~i~lWd~~~~--~~~~~~~~~--~~~--~~~~~~spdg~~l~~g~~d------g~v~i~~~~~~~ 155 (321)
T 3ow8_A 93 PIAASSSLD-----AHIRLWDLENG--KQIKSIDAG--PVD--AWTLAFSPDSQYLATGTHV------GKVNIFGVESGK 155 (321)
T ss_dssp SEEEEEETT-----SEEEEEETTTT--EEEEEEECC--TTC--CCCEEECTTSSEEEEECTT------SEEEEEETTTCS
T ss_pred CEEEEEeCC-----CcEEEEECCCC--CEEEEEeCC--Ccc--EEEEEECCCCCEEEEEcCC------CcEEEEEcCCCc
Confidence 466666644 35888998876 322 22211 111 1122222344666666642 357888876443
Q ss_pred CceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEE-eecCCCCCCCCCCCCCCC
Q 042793 374 PVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRC-VTGSGMPGAGNPGGIAPP 452 (545)
Q Consensus 374 ~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~-v~~~~~~~~~~~~g~~p~ 452 (545)
..+..... ...-.+++...++++++.|+. ...+..||+. +.+-.. +... ..
T Consensus 156 ~~~~~~~~-----~~~v~~~~~spdg~~lasg~~---------dg~i~iwd~~--~~~~~~~~~~h------------~~ 207 (321)
T 3ow8_A 156 KEYSLDTR-----GKFILSIAYSPDGKYLASGAI---------DGIINIFDIA--TGKLLHTLEGH------------AM 207 (321)
T ss_dssp EEEEEECS-----SSCEEEEEECTTSSEEEEEET---------TSCEEEEETT--TTEEEEEECCC------------SS
T ss_pred eeEEecCC-----CceEEEEEECCCCCEEEEEcC---------CCeEEEEECC--CCcEEEEEccc------------CC
Confidence 22222111 111223333344467777765 3568888987 443222 2111 11
Q ss_pred CCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 453 PRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 453 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
+ . .+.....++++++.|+.+ ..+.+||+.
T Consensus 208 ~-v-~~l~~spd~~~l~s~s~d------g~i~iwd~~ 236 (321)
T 3ow8_A 208 P-I-RSLTFSPDSQLLVTASDD------GYIKIYDVQ 236 (321)
T ss_dssp C-C-CEEEECTTSCEEEEECTT------SCEEEEETT
T ss_pred c-e-eEEEEcCCCCEEEEEcCC------CeEEEEECC
Confidence 1 1 122223467788888754 458889986
No 187
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.99 E-value=11 Score=40.29 Aligned_cols=190 Identities=12% Similarity=0.076 Sum_probs=88.8
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++..++.|+.+ ..+.++|..+. +....-. .... .-.+++...++..++.|+.+ ..+.+||+.++
T Consensus 66 ~~~~l~~~~~d------g~i~vw~~~~~--~~~~~~~-~~~~--~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~ 129 (814)
T 3mkq_A 66 RKNWIIVGSDD------FRIRVFNYNTG--EKVVDFE-AHPD--YIRSIAVHPTKPYVLSGSDD-----LTVKLWNWENN 129 (814)
T ss_dssp GGTEEEEEETT------SEEEEEETTTC--CEEEEEE-CCSS--CEEEEEECSSSSEEEEEETT-----SEEEEEEGGGT
T ss_pred CCCEEEEEeCC------CeEEEEECCCC--cEEEEEe-cCCC--CEEEEEEeCCCCEEEEEcCC-----CEEEEEECCCC
Confidence 45566666643 26889998876 4432110 1111 11122222233455566543 35788888764
Q ss_pred CCceEeccCCCCCCCCccceEEEEc-CCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEEC-
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTLD-GTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYG- 397 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~- 397 (545)
|.......... ..-.+.+... ++..++.|+.+ ..+.+||+............ .. ....+++...
T Consensus 130 ---~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~~--~~--~~v~~~~~~~~ 195 (814)
T 3mkq_A 130 ---WALEQTFEGHE-HFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTG--QE--RGVNYVDYYPL 195 (814)
T ss_dssp ---SEEEEEEECCS-SCEEEEEEETTEEEEEEEEETT------SEEEEEETTCSSCSEEEECC--CT--TCCCEEEECCS
T ss_pred ---ceEEEEEcCCC-CcEEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcceeEEecC--CC--CCEEEEEEEEC
Confidence 22222110011 1111222222 34566666643 35888997654444433321 11 1122333332
Q ss_pred -CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCC
Q 042793 398 -GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAG 476 (545)
Q Consensus 398 -~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 476 (545)
++.+++.|+. ...+..||.. +.+-...-.. ... .-.+.....++.+++.|+.+
T Consensus 196 ~~~~~l~~~~~---------dg~i~~~d~~--~~~~~~~~~~------------~~~-~v~~~~~~~~~~~l~~~~~d-- 249 (814)
T 3mkq_A 196 PDKPYMITASD---------DLTIKIWDYQ--TKSCVATLEG------------HMS-NVSFAVFHPTLPIIISGSED-- 249 (814)
T ss_dssp TTCCEEEEECT---------TSEEEEEETT--TTEEEEEEEC------------CSS-CEEEEEECSSSSEEEEEETT--
T ss_pred CCCCEEEEEeC---------CCEEEEEECC--CCcEEEEEcC------------CCC-CEEEEEEcCCCCEEEEEeCC--
Confidence 4366777664 3568888887 4332211110 111 11122223356677777753
Q ss_pred CCCCCceEEEcCC
Q 042793 477 LHSATQLYLLDPT 489 (545)
Q Consensus 477 ~~~~~~v~~~d~~ 489 (545)
..+.+||+.
T Consensus 250 ----g~v~vwd~~ 258 (814)
T 3mkq_A 250 ----GTLKIWNSS 258 (814)
T ss_dssp ----SCEEEEETT
T ss_pred ----CeEEEEECC
Confidence 458888886
No 188
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=90.98 E-value=6 Score=37.42 Aligned_cols=161 Identities=9% Similarity=0.087 Sum_probs=74.6
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
++++++.||.+. .+.++|..+. .|....... ........++.+ .+++.++.|+.++ .+.++|..+
T Consensus 27 ~g~~las~~~D~------~i~iw~~~~~--~~~~~~~~~-~~h~~~v~~~~~sp~g~~l~s~s~D~-----~v~iw~~~~ 92 (345)
T 3fm0_A 27 AGTLLASCGGDR------RIRIWGTEGD--SWICKSVLS-EGHQRTVRKVAWSPCGNYLASASFDA-----TTCIWKKNQ 92 (345)
T ss_dssp TSSCEEEEETTS------CEEEEEEETT--EEEEEEEEC-SSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECC
T ss_pred CCCEEEEEcCCC------eEEEEEcCCC--cceeeeeec-cccCCcEEEEEECCCCCEEEEEECCC-----cEEEEEccC
Confidence 455666776542 5777777665 554221000 011111222223 2335666776543 467788777
Q ss_pred CCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEEC
Q 042793 319 KPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYG 397 (545)
Q Consensus 319 ~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 397 (545)
. .+..+..+... ...-.++.+ .++++++.|+.+ ..+.++|+... ..+..+..- ......-.+++...
T Consensus 93 ~--~~~~~~~~~~h--~~~v~~v~~sp~~~~l~s~s~D------~~v~iwd~~~~-~~~~~~~~~-~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 93 D--DFECVTTLEGH--ENEVKSVAWAPSGNLLATCSRD------KSVWVWEVDEE-DEYECVSVL-NSHTQDVKHVVWHP 160 (345)
T ss_dssp C---EEEEEEECCC--SSCEEEEEECTTSSEEEEEETT------SCEEEEEECTT-SCEEEEEEE-CCCCSCEEEEEECS
T ss_pred C--CeEEEEEccCC--CCCceEEEEeCCCCEEEEEECC------CeEEEEECCCC-CCeEEEEEe-cCcCCCeEEEEECC
Confidence 6 55544332111 111122223 234666667653 24778886533 223322210 00011112233333
Q ss_pred CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeec
Q 042793 398 GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTG 437 (545)
Q Consensus 398 ~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~ 437 (545)
++.+++.|+.+ ..+..||.. +.+|..+..
T Consensus 161 ~~~~l~s~s~d---------~~i~~w~~~--~~~~~~~~~ 189 (345)
T 3fm0_A 161 SQELLASASYD---------DTVKLYREE--EDDWVCCAT 189 (345)
T ss_dssp SSSCEEEEETT---------SCEEEEEEE--TTEEEEEEE
T ss_pred CCCEEEEEeCC---------CcEEEEEec--CCCEEEEEE
Confidence 44666676643 456677776 566765443
No 189
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=90.91 E-value=0.38 Score=46.66 Aligned_cols=153 Identities=9% Similarity=0.070 Sum_probs=63.8
Q ss_pred EEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEe
Q 042793 289 SCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLD 368 (545)
Q Consensus 289 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d 368 (545)
.++.++.||+.+. + ..++++|..+....|+.-. . +. . .+.+. .++.+|+.++.+ ..++.+|
T Consensus 5 P~v~~~~v~~gs~-d-----g~v~a~d~~tG~~~W~~~~-~--~~-~--s~p~~-~~g~~~v~~s~d------g~l~a~d 65 (369)
T 2hz6_A 5 VTLPETLLFVSTL-D-----GSLHAVSKRTGSIKWTLKE-D--PV-L--QVPTH-VEEPAFLPDPND------GSLYTLG 65 (369)
T ss_dssp ---CTTEEEEEET-T-----SEEEEEETTTCCEEEEEEC-C--CS-C--CCC------CCEEECTTT------CCEEEC-
T ss_pred CeeeCCEEEEEcC-C-----CEEEEEECCCCCEEEEecC-C--Cc-e--ecceE-cCCCEEEEeCCC------CEEEEEE
Confidence 3455667776543 2 3689999999888898543 1 11 1 11122 344677776432 3488899
Q ss_pred cCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCC
Q 042793 369 LSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGG 448 (545)
Q Consensus 369 ~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g 448 (545)
..+.+..|..-.. .+... ..+.+...++.+| +|+. ...++.+|+.+....|+.-...
T Consensus 66 ~~tG~~~w~~~~~--~~~~~-~~sp~~~~~~~v~-~g~~---------dg~v~a~D~~tG~~~w~~~~~~---------- 122 (369)
T 2hz6_A 66 SKNNEGLTKLPFT--IPELV-QASPCRSSDGILY-MGKK---------QDIWYVIDLLTGEKQQTLSSAF---------- 122 (369)
T ss_dssp ----CCSEECSCC--HHHHH-TTCSCC-----CC-CCEE---------EEEEEEECCC----------------------
T ss_pred CCCCceeeeeecc--Ccccc-ccCceEecCCEEE-EEeC---------CCEEEEEECCCCcEEEEecCCC----------
Confidence 7666666753211 11000 0011111232444 3332 3568999998666678643211
Q ss_pred CCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEe
Q 042793 449 IAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 449 ~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~ 498 (545)
. .+. +. .++.|| +|+.+ ..++.+|+++.+..|+.-
T Consensus 123 --~-~~~----~p-~~~~v~-~~~~d------g~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 123 --A-DSL----SP-STSLLY-LGRTE------YTITMYDTKTRELRWNAT 157 (369)
T ss_dssp ------------------EE-EEEEE------EEEECCCSSSSSCCCEEE
T ss_pred --c-ccc----cc-cCCEEE-EEecC------CEEEEEECCCCCEEEeEe
Confidence 0 000 11 244444 44422 468899997666678863
No 190
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=90.48 E-value=0.058 Score=41.74 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=31.5
Q ss_pred HHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeee
Q 042793 37 IRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTE 88 (545)
Q Consensus 37 ~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dit 88 (545)
+.+.+..+.....+. .+.+| .|+.++..|+.+ +|.+.+++++.+|||
T Consensus 72 ~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 72 VSEVLRDGTPRRDEE--ITIKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp HHHHHHTTCCCCCCC--EESSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred HHHHhccCceeccEE--EEECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 344455554332221 23456 477888999997 788888999999997
No 191
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=90.12 E-value=12 Score=35.02 Aligned_cols=225 Identities=13% Similarity=0.105 Sum_probs=101.9
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++.+++.||.+. .+.+||+.+.....+.......... .-..+....+++ ++.|+.+ ..+.++|+.+.
T Consensus 108 ~~~~l~s~~~d~------~v~iw~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~-l~s~s~d-----~~i~~wd~~~~ 174 (340)
T 1got_B 108 SGNYVACGGLDN------ICSIYNLKTREGNVRVSRELAGHTG-YLSCCRFLDDNQ-IVTSSGD-----TTCALWDIETG 174 (340)
T ss_dssp TSSEEEEEETTC------EEEEEETTTCSBSCEEEEEEECCSS-CEEEEEEEETTE-EEEEETT-----SCEEEEETTTT
T ss_pred CCCEEEEEeCCC------eEEEEECccCCCcceeEEEecCCCc-cEEEEEECCCCc-EEEEECC-----CcEEEEECCCC
Confidence 455666676542 6778887664212221110001111 111222234445 4555533 35888999887
Q ss_pred CCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceE-EecCCCCCCCCCCcEEEEECC
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWR-EIPVTWTPPSRLGHTLSVYGG 398 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~-~~~~~~~p~~r~~~~~~~~~~ 398 (545)
.-.. ....... .-.+.+...++.+++.|+.+ ..+.++|+... .-. .+.. . ...-.+++...+
T Consensus 175 --~~~~--~~~~h~~-~v~~~~~~~~~~~l~sg~~d------~~v~~wd~~~~--~~~~~~~~--h--~~~v~~v~~~p~ 237 (340)
T 1got_B 175 --QQTT--TFTGHTG-DVMSLSLAPDTRLFVSGACD------ASAKLWDVREG--MCRQTFTG--H--ESDINAICFFPN 237 (340)
T ss_dssp --EEEE--EECCCSS-CEEEEEECTTSSEEEEEETT------SCEEEEETTTC--SEEEEECC--C--SSCEEEEEECTT
T ss_pred --cEEE--EEcCCCC-ceEEEEECCCCCEEEEEeCC------CcEEEEECCCC--eeEEEEcC--C--cCCEEEEEEcCC
Confidence 3321 1110111 11122222344677777653 34788886533 221 2211 1 111223334444
Q ss_pred cEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEe-cCCEEEEEcCcCCCC
Q 042793 399 RKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSL-PGGRILIFGGSVAGL 477 (545)
Q Consensus 399 ~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~ 477 (545)
+.+++.|+. ...+..||+. +.+-...... +.....-.++.. .++++++.|+.+
T Consensus 238 ~~~l~s~s~---------d~~v~iwd~~--~~~~~~~~~~------------~~~~~~v~~~~~s~~g~~l~~g~~d--- 291 (340)
T 1got_B 238 GNAFATGSD---------DATCRLFDLR--ADQELMTYSH------------DNIICGITSVSFSKSGRLLLAGYDD--- 291 (340)
T ss_dssp SSEEEEEET---------TSCEEEEETT--TTEEEEEECC------------TTCCSCEEEEEECTTSSEEEEEETT---
T ss_pred CCEEEEEcC---------CCcEEEEECC--CCcEEEEEcc------------CCcccceEEEEECCCCCEEEEECCC---
Confidence 467777764 2567788887 4332211111 111112223332 367788887754
Q ss_pred CCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCC
Q 042793 478 HSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTG 529 (545)
Q Consensus 478 ~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~ 529 (545)
..+.+||..+. ..-..+. .... .-.+.....++..++.||.++
T Consensus 292 ---~~i~vwd~~~~-~~~~~~~---~h~~--~v~~~~~s~dg~~l~s~s~D~ 334 (340)
T 1got_B 292 ---FNCNVWDALKA-DRAGVLA---GHDN--RVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp ---SEEEEEETTTC-CEEEEEE---CCSS--CEEEEEECTTSSCEEEEETTS
T ss_pred ---CeEEEEEcccC-cEeeEee---cCCC--cEEEEEEcCCCCEEEEEcCCc
Confidence 56889998532 1111221 1111 111222334667777787664
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=89.91 E-value=19 Score=36.88 Aligned_cols=250 Identities=13% Similarity=0.134 Sum_probs=113.8
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCC--CCCCceEEeccCCCCCCccceeEEEE-----cCCEEEEEcCCCCCcccCcEE
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLN--SSNPEWQHVHVSSPPPGRWGHTLSCV-----NGSHLVVFGGCGRQGLLNDVF 312 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~--t~~~~W~~~~~~~~~~~r~~~~~~~~-----~~~~iyv~GG~~~~~~~~~~~ 312 (545)
+..+|+.+. + +.+.++|+. +.. .-.++... ..|| .++.. +++++|+..- ..+.+.
T Consensus 208 Gr~lyv~~~-d------g~V~viD~~~~t~~-~v~~i~~G--~~P~---~ia~s~~~~pDGk~l~v~n~-----~~~~v~ 269 (567)
T 1qks_A 208 GRYLFVIGR-D------GKVNMIDLWMKEPT-TVAEIKIG--SEAR---SIETSKMEGWEDKYAIAGAY-----WPPQYV 269 (567)
T ss_dssp SCEEEEEET-T------SEEEEEETTSSSCC-EEEEEECC--SEEE---EEEECCSTTCTTTEEEEEEE-----ETTEEE
T ss_pred CCEEEEEcC-C------CeEEEEECCCCCCc-EeEEEecC--CCCc---eeEEccccCCCCCEEEEEEc-----cCCeEE
Confidence 456787642 1 379999985 431 22233211 1222 22333 5667777643 235678
Q ss_pred EEecCCCCCceEeccC--CC------CCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCC
Q 042793 313 VLDLDAKPPTWREISG--LA------PPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWT 384 (545)
Q Consensus 313 ~yd~~t~~~~W~~~~~--~~------~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~ 384 (545)
++|..|..... .++. +. .|.+|.........+..+++.-. ..+.++..|.... ....+.. .
T Consensus 270 ViD~~t~~~~~-~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~------~~g~v~~vd~~~~--~~~~v~~--i 338 (567)
T 1qks_A 270 IMDGETLEPKK-IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK------ETGKILLVDYTDL--NNLKTTE--I 338 (567)
T ss_dssp EEETTTCCEEE-EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET------TTTEEEEEETTCS--SEEEEEE--E
T ss_pred EEECCCCcEEE-EEeccccccccccccCCCceEEEEEcCCCCEEEEEec------CCCeEEEEecCCC--ccceeee--e
Confidence 89987762221 1221 10 12333322211222223333211 1245788885432 3333322 3
Q ss_pred CCCCCCcEEEEECCcE-EEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEec
Q 042793 385 PPSRLGHTLSVYGGRK-ILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLP 463 (545)
Q Consensus 385 p~~r~~~~~~~~~~~~-lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~ 463 (545)
+.++.-|....-.+++ +|+.... .+.|.++|.. +.+-...-..+ +..|.|..+. .+...
T Consensus 339 ~~~~~~~d~~~~pdgr~~~va~~~---------sn~V~ViD~~--t~kl~~~i~vg--------g~~Phpg~g~-~~~~p 398 (567)
T 1qks_A 339 SAERFLHDGGLDGSHRYFITAANA---------RNKLVVIDTK--EGKLVAIEDTG--------GQTPHPGRGA-NFVHP 398 (567)
T ss_dssp ECCSSEEEEEECTTSCEEEEEEGG---------GTEEEEEETT--TTEEEEEEECS--------SSSBCCTTCE-EEEET
T ss_pred eccccccCceECCCCCEEEEEeCC---------CCeEEEEECC--CCcEEEEEecc--------CcCCCCccce-eeECC
Confidence 3345556554444334 4443321 5889999998 54432221110 2234442222 23333
Q ss_pred C-CEEEEEcCcCCCCCCCCceEEEcCCCCC---CceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCccccccccee
Q 042793 464 G-GRILIFGGSVAGLHSATQLYLLDPTEEK---PTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHE 539 (545)
Q Consensus 464 ~-~~l~v~GG~~~~~~~~~~v~~~d~~~~~---~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~ 539 (545)
+ +.+|+.+-.. .+.|.++|.++++ ..|+.+........ ...+-...-.+.++|+---.+++....+.|.+
T Consensus 399 ~~g~v~~t~~~g-----~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~-g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v 472 (567)
T 1qks_A 399 TFGPVWATSHMG-----DDSVALIGTDPEGHPDNAWKILDSFPALGG-GSLFIKTHPNSQYLYVDATLNPEAEISGSVAV 472 (567)
T ss_dssp TTEEEEEEEBSS-----SSEEEEEECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCSEEEEECTTCSSHHHHTCEEE
T ss_pred CCCcEEEeCCCC-----CCeEEEecCCCCCCccccCEEEEEEecCCC-CCEEEEeCCCCCeEEEecCCCCCcccCceEEE
Confidence 3 5677764321 2468888876322 23887754322111 00111111224578874433333222467777
Q ss_pred eeecc
Q 042793 540 LSLVS 544 (545)
Q Consensus 540 l~l~~ 544 (545)
||+++
T Consensus 473 ~d~~~ 477 (567)
T 1qks_A 473 FDIKA 477 (567)
T ss_dssp EEGGG
T ss_pred EECCc
Confidence 77653
No 193
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=89.60 E-value=1.7 Score=41.69 Aligned_cols=151 Identities=13% Similarity=0.175 Sum_probs=68.3
Q ss_pred CEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCC
Q 042793 294 SHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSME 372 (545)
Q Consensus 294 ~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 372 (545)
+++++.|+.+ ..+.+||+.+. .|..+..+... ...-.++.+ .++.+++.|+.+ ..+.+||+...
T Consensus 23 g~~l~~~~~d-----~~i~iw~~~~~--~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~d------~~v~vwd~~~~ 87 (377)
T 3dwl_C 23 RTEFVTTTAT-----NQVELYEQDGN--GWKHARTFSDH--DKIVTCVDWAPKSNRIVTCSQD------RNAYVYEKRPD 87 (377)
T ss_dssp SSEEECCCSS-----SCBCEEEEETT--EEEECCCBCCC--SSCEEEEEECTTTCCEEEEETT------SSEEEC-----
T ss_pred CCEEEEecCC-----CEEEEEEccCC--ceEEEEEEecC--CceEEEEEEeCCCCEEEEEeCC------CeEEEEEcCCC
Confidence 3566666643 35788888888 78776655211 111122233 234566666642 34788886543
Q ss_pred CCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCC
Q 042793 373 KPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPP 452 (545)
Q Consensus 373 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~ 452 (545)
. .|...... ......-.+++...++.+++.|+. ...+..+|+.+. ..|..+... ..
T Consensus 88 ~-~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~-~~~~~~~~~------------~~ 143 (377)
T 3dwl_C 88 G-TWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSG---------ARVISVCYFEQE-NDWWVSKHL------------KR 143 (377)
T ss_dssp --CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEES---------SSCEEECCC------CCCCEEE------------CS
T ss_pred C-ceeeeeEe-cccCCceEEEEECCCCCEEEEEec---------CCeEEEEEECCc-ccceeeeEe------------ec
Confidence 2 13222110 111111122322334456666664 256777787631 223323222 11
Q ss_pred -CCcceEEEE-ecCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 453 -PRLDHVAVS-LPGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 453 -~r~~~~~~~-~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
....-.++. ..++++++.|+.+ ..+.+||+.
T Consensus 144 ~h~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~ 176 (377)
T 3dwl_C 144 PLRSTILSLDWHPNNVLLAAGCAD------RKAYVLSAY 176 (377)
T ss_dssp SCCSCEEEEEECTTSSEEEEEESS------SCEEEEEEC
T ss_pred ccCCCeEEEEEcCCCCEEEEEeCC------CEEEEEEEE
Confidence 111122333 2366778887754 457778874
No 194
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=89.08 E-value=14 Score=34.81 Aligned_cols=158 Identities=13% Similarity=0.149 Sum_probs=74.2
Q ss_pred CCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCC
Q 042793 293 GSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSM 371 (545)
Q Consensus 293 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 371 (545)
++++++.||.+ ..+.++|..+. .|............. -.++.+ .++.+++.|+.+ ..+.++++..
T Consensus 27 ~g~~las~~~D-----~~i~iw~~~~~--~~~~~~~~~~~h~~~-v~~~~~sp~g~~l~s~s~D------~~v~iw~~~~ 92 (345)
T 3fm0_A 27 AGTLLASCGGD-----RRIRIWGTEGD--SWICKSVLSEGHQRT-VRKVAWSPCGNYLASASFD------ATTCIWKKNQ 92 (345)
T ss_dssp TSSCEEEEETT-----SCEEEEEEETT--EEEEEEEECSSCSSC-EEEEEECTTSSEEEEEETT------SCEEEEEECC
T ss_pred CCCEEEEEcCC-----CeEEEEEcCCC--cceeeeeeccccCCc-EEEEEECCCCCEEEEEECC------CcEEEEEccC
Confidence 34566777654 35788888887 765322110001111 112223 234566667653 2366677543
Q ss_pred CCCceEEecCCCCCC-CCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCC
Q 042793 372 EKPVWREIPVTWTPP-SRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIA 450 (545)
Q Consensus 372 ~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~ 450 (545)
. .+..+.. +.. ...-.+++...++.+++.|+.+ ..+..+|+.. ...+..+...
T Consensus 93 ~--~~~~~~~--~~~h~~~v~~v~~sp~~~~l~s~s~D---------~~v~iwd~~~-~~~~~~~~~~------------ 146 (345)
T 3fm0_A 93 D--DFECVTT--LEGHENEVKSVAWAPSGNLLATCSRD---------KSVWVWEVDE-EDEYECVSVL------------ 146 (345)
T ss_dssp C---EEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEEECT-TSCEEEEEEE------------
T ss_pred C--CeEEEEE--ccCCCCCceEEEEeCCCCEEEEEECC---------CeEEEEECCC-CCCeEEEEEe------------
Confidence 3 4433321 111 1111233333344677777653 5577777762 2234433322
Q ss_pred CCCCcceEEEE-ecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEe
Q 042793 451 PPPRLDHVAVS-LPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 451 p~~r~~~~~~~-~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~ 498 (545)
......-.++. ..++++++.|+.+ ..+.+||.. +..|..+
T Consensus 147 ~~h~~~v~~~~~~p~~~~l~s~s~d------~~i~~w~~~--~~~~~~~ 187 (345)
T 3fm0_A 147 NSHTQDVKHVVWHPSQELLASASYD------DTVKLYREE--EDDWVCC 187 (345)
T ss_dssp CCCCSCEEEEEECSSSSCEEEEETT------SCEEEEEEE--TTEEEEE
T ss_pred cCcCCCeEEEEECCCCCEEEEEeCC------CcEEEEEec--CCCEEEE
Confidence 11111112222 2356777777754 457778875 4556544
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=89.08 E-value=13 Score=33.70 Aligned_cols=228 Identities=9% Similarity=-0.025 Sum_probs=110.6
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++.+|+..... ..++++|+. . +.+.+.... ....-+.++.-.++++|+.... .+.+++||+ +.
T Consensus 67 ~g~l~v~~~~~------~~i~~~~~~-g--~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g 129 (299)
T 2z2n_A 67 DGEVWFTENAA------NKIGRITKK-G--IIKEYTLPN--PDSAPYGITEGPNGDIWFTEMN-----GNRIGRITD-DG 129 (299)
T ss_dssp TSCEEEEETTT------TEEEEECTT-S--CEEEEECSS--TTCCEEEEEECTTSCEEEEETT-----TTEEEEECT-TC
T ss_pred CCCEEEeCCCC------CeEEEECCC-C--cEEEEeCCC--cCCCceeeEECCCCCEEEEecC-----CceEEEECC-CC
Confidence 46788765321 268899886 3 555443110 1122234443334578886532 246889998 55
Q ss_pred CCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCc
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGR 399 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 399 (545)
+...+... ......+..+.-.++.+|+.... .+.++++|. +.+...+... .....-.+++...++
T Consensus 130 --~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~---~g~~~~~~~~--~~~~~~~~i~~~~~g 194 (299)
T 2z2n_A 130 --KIREYELP--NKGSYPSFITLGSDNALWFTENQ------NNAIGRITE---SGDITEFKIP--TPASGPVGITKGNDD 194 (299)
T ss_dssp --CEEEEECS--STTCCEEEEEECTTSCEEEEETT------TTEEEEECT---TCCEEEEECS--STTCCEEEEEECTTS
T ss_pred --CEEEecCC--CCCCCCceEEEcCCCCEEEEeCC------CCEEEEEcC---CCcEEEeeCC--CCCCcceeEEECCCC
Confidence 44433211 01111222222234578886421 135888885 2345444211 111112334444445
Q ss_pred EEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEe-cCCEEEEEcCcCCCCC
Q 042793 400 KILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSL-PGGRILIFGGSVAGLH 478 (545)
Q Consensus 400 ~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~ 478 (545)
.+|+.... .+.+++||+. .+...+.. +.......++.+ .++.+|+....
T Consensus 195 ~l~v~~~~---------~~~i~~~~~~---g~~~~~~~-------------~~~~~~~~~i~~~~~g~l~v~~~~----- 244 (299)
T 2z2n_A 195 ALWFVEII---------GNKIGRITTS---GEITEFKI-------------PTPNARPHAITAGAGIDLWFTEWG----- 244 (299)
T ss_dssp SEEEEETT---------TTEEEEECTT---CCEEEEEC-------------SSTTCCEEEEEECSTTCEEEEETT-----
T ss_pred CEEEEccC---------CceEEEECCC---CcEEEEEC-------------CCCCCCceeEEECCCCCEEEeccC-----
Confidence 78876532 3678899983 23444321 111112223333 35678876421
Q ss_pred CCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeecc
Q 042793 479 SATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 479 ~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
.+.++.||+. .+...+....... .-.+.+. .++.||+... . +.+++|++++
T Consensus 245 -~~~i~~~d~~---g~~~~~~~~~~~~---~~~~i~~-~~g~l~v~~~-~------~~l~~~~~~~ 295 (299)
T 2z2n_A 245 -ANKIGRLTSN---NIIEEYPIQIKSA---EPHGICF-DGETIWFAME-C------DKIGKLTLIK 295 (299)
T ss_dssp -TTEEEEEETT---TEEEEEECSSSSC---CEEEEEE-CSSCEEEEET-T------TEEEEEEEC-
T ss_pred -CceEEEECCC---CceEEEeCCCCCC---ccceEEe-cCCCEEEEec-C------CcEEEEEcCc
Confidence 3569999983 3344442211111 1123334 6778887542 1 3477777654
No 196
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=89.00 E-value=18 Score=35.42 Aligned_cols=149 Identities=10% Similarity=0.092 Sum_probs=66.6
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCC--CCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLN--SSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~--t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
..|++.|+.+. .+.+||+. +. ..-..+.....+. .-.+++...+++.+++|+.+ ..++++++.+
T Consensus 115 ~~l~~~~~~dg------~v~iwd~~~~~~-~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~~-----g~v~~~~~~~ 180 (450)
T 2vdu_B 115 SRLIACADSDK------SLLVFDVDKTSK-NVLKLRKRFCFSK--RPNAISIAEDDTTVIIADKF-----GDVYSIDINS 180 (450)
T ss_dssp SEEEEEEGGGT------EEEEEEECSSSS-SCEEEEEEEECSS--CEEEEEECTTSSEEEEEETT-----SEEEEEETTS
T ss_pred CEEEEEECCCC------eEEEEECcCCCC-ceeeeeecccCCC--CceEEEEcCCCCEEEEEeCC-----CcEEEEecCC
Confidence 34567776542 57788876 43 1222221101111 11122222233455666532 3578888876
Q ss_pred CCCceEe--ccCCCCCCCCccceEEEEcC---CEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEE
Q 042793 319 KPPTWRE--ISGLAPPLPRSWHSSCTLDG---TKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTL 393 (545)
Q Consensus 319 ~~~~W~~--~~~~~~~~~r~~~~~~~~~~---~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~ 393 (545)
. .... +........ .-.+.+...+ +++++.|+.+ ..+.+||+............ ... .-.++
T Consensus 181 ~--~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~--h~~--~v~~~ 247 (450)
T 2vdu_B 181 I--PEEKFTQEPILGHVS-MLTDVHLIKDSDGHQFIITSDRD------EHIKISHYPQCFIVDKWLFG--HKH--FVSSI 247 (450)
T ss_dssp C--CCSSCCCCCSEECSS-CEEEEEEEECTTSCEEEEEEETT------SCEEEEEESCTTCEEEECCC--CSS--CEEEE
T ss_pred c--ccccccceeeecccC-ceEEEEEcCCCCCCcEEEEEcCC------CcEEEEECCCCceeeeeecC--CCC--ceEEE
Confidence 5 2211 111100111 1112222233 5677777653 35888887544222111211 111 11222
Q ss_pred EEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 394 SVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 394 ~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
+..++ .+++.|+. ...|..||+.
T Consensus 248 ~~sd~-~~l~s~~~---------d~~v~vwd~~ 270 (450)
T 2vdu_B 248 CCGKD-YLLLSAGG---------DDKIFAWDWK 270 (450)
T ss_dssp EECST-TEEEEEES---------SSEEEEEETT
T ss_pred EECCC-CEEEEEeC---------CCeEEEEECC
Confidence 23334 66666663 3678888887
No 197
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=88.96 E-value=13 Score=33.65 Aligned_cols=193 Identities=8% Similarity=-0.053 Sum_probs=95.8
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++.||+.... ...+.+||+. . +...+.... ....-+.++.-.++.+|+.... .+.+.+||+. .
T Consensus 30 ~g~l~v~~~~------~~~v~~~~~~-~--~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~-----~~~v~~~d~~-g 92 (300)
T 2qc5_A 30 DGKVWFTQHK------ANKISSLDQS-G--RIKEFEVPT--PDAKVMCLIVSSLGDIWFTENG-----ANKIGKLSKK-G 92 (300)
T ss_dssp TSCEEEEETT------TTEEEEECTT-S--CEEEEECSS--TTCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-S
T ss_pred CCCEEEEcCC------CCeEEEECCC-C--ceEEEECCC--CCCcceeEEECCCCCEEEEecC-----CCeEEEECCC-C
Confidence 4678886532 1368899987 5 565543211 1112233333334578886432 2458899988 5
Q ss_pred CCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCc
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGR 399 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 399 (545)
++..+... .....-+..+.-.++.+|+.... .+.++++|.+ .+....... .....-+.++...++
T Consensus 93 --~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~---g~~~~~~~~--~~~~~~~~i~~d~~g 157 (300)
T 2qc5_A 93 --GFTEYPLP--QPDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD---GTIYEYDLP--NKGSYPAFITLGSDN 157 (300)
T ss_dssp --CEEEEECS--STTCCEEEEEECSTTCEEEEETT------TTEEEEECTT---SCEEEEECS--STTCCEEEEEECTTS
T ss_pred --CeEEecCC--CCCCCCccceECCCCCEEEEccC------CCeEEEECCC---CCEEEccCC--CCCCCceeEEECCCC
Confidence 55544321 01112222222234578886432 1357888854 244433211 011222344443444
Q ss_pred EEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEe-cCCEEEEEcCcCCCCC
Q 042793 400 KILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSL-PGGRILIFGGSVAGLH 478 (545)
Q Consensus 400 ~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~ 478 (545)
++|+.... ...+++||+. .+...+.. +........+.+ .++.||+....
T Consensus 158 ~l~v~~~~---------~~~i~~~~~~---g~~~~~~~-------------~~~~~~~~~i~~d~~g~l~v~~~~----- 207 (300)
T 2qc5_A 158 ALWFTENQ---------NNSIGRITNT---GKLEEYPL-------------PTNAAAPVGITSGNDGALWFVEIM----- 207 (300)
T ss_dssp SEEEEETT---------TTEEEEECTT---CCEEEEEC-------------SSTTCCEEEEEECTTSSEEEEETT-----
T ss_pred CEEEEecC---------CCeEEEECCC---CcEEEeeC-------------CCCCCCcceEEECCCCCEEEEccC-----
Confidence 78876432 3578899884 34444431 111112233333 35678886432
Q ss_pred CCCceEEEcCCCCCCceEEe
Q 042793 479 SATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 479 ~~~~v~~~d~~~~~~~W~~~ 498 (545)
.+.+++||+. .++...
T Consensus 208 -~~~i~~~~~~---g~~~~~ 223 (300)
T 2qc5_A 208 -GNKIGRITTT---GEISEY 223 (300)
T ss_dssp -TTEEEEECTT---CCEEEE
T ss_pred -CCEEEEEcCC---CcEEEE
Confidence 2468999983 344444
No 198
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=88.70 E-value=13 Score=35.44 Aligned_cols=156 Identities=11% Similarity=0.059 Sum_probs=72.2
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCC
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPS 387 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~ 387 (545)
..++++|+.+. ....+... + ....+....- +++.+++... .........++.+|+. +..+..+.. ..+ .
T Consensus 168 ~~l~~~d~~~g--~~~~~~~~--~-~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~--~~~~~~l~~-~~~-~ 237 (396)
T 3c5m_A 168 CRLIKVDIETG--ELEVIHQD--T-AWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNED--GSNVRKIKE-HAE-G 237 (396)
T ss_dssp EEEEEEETTTC--CEEEEEEE--S-SCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETT--SCCCEESSC-CCT-T
T ss_pred ceEEEEECCCC--cEEeeccC--C-cccccceECCCCCCEEEEEec-CCCCCCCceEEEEECC--CCceeEeec-cCC-C
Confidence 46889999887 66655432 1 1122222221 2434544432 1111122568999965 335655542 111 1
Q ss_pred CCCcEEEEECCcE-EEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEec-CC
Q 042793 388 RLGHTLSVYGGRK-ILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLP-GG 465 (545)
Q Consensus 388 r~~~~~~~~~~~~-lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~-~~ 465 (545)
..........+++ |++. ....... ...++.+|+. +.+...+... + .. ...... ++
T Consensus 238 ~~~~~~~~spdg~~l~~~-~~~~~~~----~~~l~~~d~~--~g~~~~l~~~------------~--~~--~~~~s~~dg 294 (396)
T 3c5m_A 238 ESCTHEFWIPDGSAMAYV-SYFKGQT----DRVIYKANPE--TLENEEVMVM------------P--PC--SHLMSNFDG 294 (396)
T ss_dssp EEEEEEEECTTSSCEEEE-EEETTTC----CEEEEEECTT--TCCEEEEEEC------------C--SE--EEEEECSSS
T ss_pred ccccceEECCCCCEEEEE-ecCCCCc----cceEEEEECC--CCCeEEeeeC------------C--CC--CCCccCCCC
Confidence 1111222232334 4443 2221110 1349999998 5566665433 2 11 122333 66
Q ss_pred EEEEEcCcCCC----------CCCCCceEEEcCCCCCCceEEec
Q 042793 466 RILIFGGSVAG----------LHSATQLYLLDPTEEKPTWRILN 499 (545)
Q Consensus 466 ~l~v~GG~~~~----------~~~~~~v~~~d~~~~~~~W~~~~ 499 (545)
+++++.+.+.. ......++.+|+. +.+...+.
T Consensus 295 ~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~--~~~~~~l~ 336 (396)
T 3c5m_A 295 SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK--AKSAQKLC 336 (396)
T ss_dssp SEEEEEECCC----------CCCCCCEEEEEETT--TTBCCEEE
T ss_pred ceEEEecCCcceeeccccccccCCCCcEEEEecc--cCceEEcc
Confidence 76666442210 1123679999996 34444553
No 199
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=88.53 E-value=23 Score=36.83 Aligned_cols=205 Identities=11% Similarity=0.023 Sum_probs=95.9
Q ss_pred CceEEEeCC--C-CCCceEEeccCCCC----CCccceeEEEEcCCEEEEEcCCCC-----CcccCcEEEEecCC------
Q 042793 257 NDTFVLDLN--S-SNPEWQHVHVSSPP----PGRWGHTLSCVNGSHLVVFGGCGR-----QGLLNDVFVLDLDA------ 318 (545)
Q Consensus 257 ~~~~~~d~~--t-~~~~W~~~~~~~~~----~~r~~~~~~~~~~~~iyv~GG~~~-----~~~~~~~~~yd~~t------ 318 (545)
..+|.+++. + . ..+++. ..+ ..+....+..-+++.|+... .+. .....+++++|+.+
T Consensus 102 ~~l~~~~~~~~g~~--~~~~l~--~~~~~~~~~~~~~~~~spDg~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 102 QRLYAFEPDAPGGA--VPRPLT--PVSAVGGGLRWADPVLLPERGEVWCMA-EEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp CCEEEECTTSTTCC--CCEECS--CCCCSTTCEEEEEEEEETTTTEEEEEE-EEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred CeEEEEcCCCCCCC--CCEecc--CCccCCCCccccCcEECCCCCEEEEEE-ecccCCCCCCceeEEEEEECCCCccccC
Confidence 479999986 3 4 555553 221 11221111122455555443 221 02335799999988
Q ss_pred CCCceEecc-CCCCCCCCccceEEEEcCCEEEEEcCCCCCCC--ccCcEEEEecCCCCC---ceEEecCCCCCCCCCCcE
Q 042793 319 KPPTWREIS-GLAPPLPRSWHSSCTLDGTKLIVSGGCADSGV--LLSDTFLLDLSMEKP---VWREIPVTWTPPSRLGHT 392 (545)
Q Consensus 319 ~~~~W~~~~-~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~--~~~~~~~~d~~~~~~---~W~~~~~~~~p~~r~~~~ 392 (545)
. .-+.+. .. . ......+..-+|+.|++... ..... ...+++++|+.. +. ....+... . ......
T Consensus 177 ~--~~~~l~~~~--~-~~~~~~~~SpDG~~la~~~~-~~~~~~~~~~~i~~~d~~~-~g~~~~~~~l~~~--~-~~~~~~ 246 (662)
T 3azo_A 177 S--AVRELSDDA--H-RFVTGPRLSPDGRQAVWLAW-DHPRMPWEGTELKTARVTE-DGRFADTRTLLGG--P-EEAIAQ 246 (662)
T ss_dssp G--GSEESSCSC--S-SEECCCEECTTSSEEEEEEE-CTTCCTTTCEEEEEEEECT-TSCEEEEEEEEEE--T-TBCEEE
T ss_pred C--ceeEEEecC--C-CcccCceECCCCCEEEEEEC-CCCCCCCCCcEEEEEEECC-CCcccccEEeCCC--C-CceEcc
Confidence 5 555555 32 1 11111122224545554432 22111 124699999752 12 33333321 0 111223
Q ss_pred EEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEe-cCCEEEEEc
Q 042793 393 LSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSL-PGGRILIFG 471 (545)
Q Consensus 393 ~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~G 471 (545)
.....++++|+.+... + ...+|.+|+. +.+++.+.... .. ...|.-......+.. .++++++.+
T Consensus 247 ~~~spdg~l~~~~~~~--~-----~~~l~~~~~~--~~~~~~l~~~~----~~--~~~p~w~~~~~~~~~~~~~~~~~~~ 311 (662)
T 3azo_A 247 AEWAPDGSLIVATDRT--G-----WWNLHRVDPA--TGAATQLCRRE----EE--FAGPLWTPGMRWFAPLANGLIAVVH 311 (662)
T ss_dssp EEECTTSCEEEEECTT--S-----SCEEEEECTT--TCCEEESSCCS----SB--SSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred eEECCCCeEEEEECCC--C-----CeEEEEEECC--CCceeeccccc----cc--ccCccccccCceEeEeCCCEEEEEE
Confidence 3334344677665432 1 3579999987 66787765331 00 000111000112222 367777665
Q ss_pred CcCCCCCCCCceEEEcCCCCCCceEEe
Q 042793 472 GSVAGLHSATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 472 G~~~~~~~~~~v~~~d~~~~~~~W~~~ 498 (545)
.. ....+|.+|++ +...+.+
T Consensus 312 ~~-----~~~~l~~~d~~--~~~~~~l 331 (662)
T 3azo_A 312 GK-----GAAVLGILDPE--SGELVDA 331 (662)
T ss_dssp BS-----SSCEEEEEETT--TTEEEEC
T ss_pred Ec-----CccEEEEEECC--CCcEEEe
Confidence 43 24678988986 3455555
No 200
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=88.16 E-value=0.23 Score=48.55 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=37.5
Q ss_pred CCCcccCCCC-ccccccCcccc-hhhHHHHHhhccCChhhhhhHHHhhHHHHHhcC
Q 042793 118 NRTFPIGDRN-VCREVCGIFQL-SDEVISLKILSWLSPRDIASVGSVCRRFYELTK 171 (545)
Q Consensus 118 ~~~~~~g~~~-~~~~~~~~~~l-p~~~~~~~~~~~l~~~~~~~~~~vcr~~~~l~~ 171 (545)
...+.+|... ++++...++|+ |+|+++..++.+++|+|...+ -+.+..++.
T Consensus 282 ~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~---~~~~~~~l~ 334 (387)
T 4f3l_B 282 SRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHL---AECHRQVLQ 334 (387)
T ss_dssp EEECTTSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHH---HHHHHHHTT
T ss_pred EEECCCCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHH---HHHHHHHHh
Confidence 3445566664 89999999999 999998888899999887654 334444443
No 201
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=88.05 E-value=15 Score=33.22 Aligned_cols=191 Identities=7% Similarity=0.059 Sum_probs=92.8
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++.||+.+... ...+.+||.... ....+.......+ +.++.-.++++|+.... .+.+.+||+...
T Consensus 88 ~g~l~v~~~~~-----~~~i~~~d~~g~--~~~~~~~~~~~~~---~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~ 152 (286)
T 1q7f_A 88 SGDIIVTERSP-----THQIQIYNQYGQ--FVRKFGATILQHP---RGVTVDNKGRIIVVECK-----VMRVIIFDQNGN 152 (286)
T ss_dssp TTEEEEEECGG-----GCEEEEECTTSC--EEEEECTTTCSCE---EEEEECTTSCEEEEETT-----TTEEEEECTTSC
T ss_pred CCeEEEEcCCC-----CCEEEEECCCCc--EEEEecCccCCCc---eEEEEeCCCCEEEEECC-----CCEEEEEcCCCC
Confidence 57898876321 136889995443 3333321111112 33443334478887542 246889997655
Q ss_pred CCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCc
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGR 399 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 399 (545)
....+... .....-...+.-.++.+|+.... .+.+.+||.. ......+.... ....-.+++.-.++
T Consensus 153 --~~~~~~~~--~~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~--g~~~~~~~~~g--~~~~p~~i~~d~~G 218 (286)
T 1q7f_A 153 --VLHKFGCS--KHLEFPNGVVVNDKQEIFISDNR------AHCVKVFNYE--GQYLRQIGGEG--ITNYPIGVGINSNG 218 (286)
T ss_dssp --EEEEEECT--TTCSSEEEEEECSSSEEEEEEGG------GTEEEEEETT--CCEEEEESCTT--TSCSEEEEEECTTC
T ss_pred --EEEEeCCC--CccCCcEEEEECCCCCEEEEECC------CCEEEEEcCC--CCEEEEEccCC--ccCCCcEEEECCCC
Confidence 44433221 00011112222234578886542 2458999953 33333443211 00112334444455
Q ss_pred EEEEEcccCCCCCCccccC-cEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCC
Q 042793 400 KILMFGGLAKSGPLRFRSS-DVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLH 478 (545)
Q Consensus 400 ~lyi~GG~~~~~~~~~~~~-~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 478 (545)
.+|+.... .+ .|.+||+. ...-..+... .+... ........++++||...
T Consensus 219 ~l~v~~~~---------~~~~i~~~~~~--g~~~~~~~~~-----------~~~~~-~~~i~~~~~g~l~vs~~------ 269 (286)
T 1q7f_A 219 EILIADNH---------NNFNLTIFTQD--GQLISALESK-----------VKHAQ-CFDVALMDDGSVVLASK------ 269 (286)
T ss_dssp CEEEEECS---------SSCEEEEECTT--SCEEEEEEES-----------SCCSC-EEEEEEETTTEEEEEET------
T ss_pred CEEEEeCC---------CCEEEEEECCC--CCEEEEEccc-----------CCCCc-ceeEEECCCCcEEEECC------
Confidence 88887643 23 78899976 4333333322 11111 11222334788888732
Q ss_pred CCCceEEEcCC
Q 042793 479 SATQLYLLDPT 489 (545)
Q Consensus 479 ~~~~v~~~d~~ 489 (545)
.+.|.+|++.
T Consensus 270 -~~~v~v~~~~ 279 (286)
T 1q7f_A 270 -DYRLYIYRYV 279 (286)
T ss_dssp -TTEEEEEECS
T ss_pred -CCeEEEEEcc
Confidence 2567777764
No 202
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=87.98 E-value=28 Score=36.39 Aligned_cols=113 Identities=17% Similarity=0.114 Sum_probs=51.5
Q ss_pred CcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCC-ceEEeecCCC
Q 042793 362 SDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEP-CWRCVTGSGM 440 (545)
Q Consensus 362 ~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~-~W~~v~~~~~ 440 (545)
..++++|+.+. +-..+... .........++...+++.++++..+.... ...++.+|+. +. ....+....
T Consensus 235 ~~l~~~d~~~~--~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~----~~~v~~~d~~--~g~~~~~~~~~~- 304 (706)
T 2z3z_A 235 VTVGIYHLATG--KTVYLQTG-EPKEKFLTNLSWSPDENILYVAEVNRAQN----ECKVNAYDAE--TGRFVRTLFVET- 304 (706)
T ss_dssp EEEEEEETTTT--EEEECCCC-SCTTCEEEEEEECTTSSEEEEEEECTTSC----EEEEEEEETT--TCCEEEEEEEEE-
T ss_pred eEEEEEECCCC--ceEeeccC-CCCceeEeeEEEECCCCEEEEEEeCCCCC----eeEEEEEECC--CCceeeEEEEcc-
Confidence 46888886533 44444321 11111112333333434444433322221 3689999988 54 555553220
Q ss_pred CCCCCCCCCCCCCCcceEEEEec--CCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEe
Q 042793 441 PGAGNPGGIAPPPRLDHVAVSLP--GGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 441 ~~~~~~~g~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~ 498 (545)
........ ....... ++++++.+..+ ....+|.+|.. ......+
T Consensus 305 -------~~~~~~~~-~~~~~sp~~dg~~l~~~~~~----g~~~l~~~~~~--~~~~~~l 350 (706)
T 2z3z_A 305 -------DKHYVEPL-HPLTFLPGSNNQFIWQSRRD----GWNHLYLYDTT--GRLIRQV 350 (706)
T ss_dssp -------CSSCCCCC-SCCEECTTCSSEEEEEECTT----SSCEEEEEETT--SCEEEEC
T ss_pred -------CCCeECcc-CCceeecCCCCEEEEEEccC----CccEEEEEECC--CCEEEec
Confidence 00000000 1122234 67766665433 24678888864 3445555
No 203
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=87.93 E-value=0.19 Score=52.21 Aligned_cols=35 Identities=29% Similarity=0.635 Sum_probs=28.7
Q ss_pred CcccchhhHHHHHhhccCC-hhhhhhHHHhhHHHHHh
Q 042793 134 GIFQLSDEVISLKILSWLS-PRDIASVGSVCRRFYEL 169 (545)
Q Consensus 134 ~~~~lp~~~~~~~~~~~l~-~~~~~~~~~vcr~~~~l 169 (545)
.+..||+|++ .+|+++++ ..+..+++.|||+|+.+
T Consensus 5 ~~~~LPdevL-~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 5 IALSFPEEVL-EHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -----CHHHH-HHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred chhhCCHHHH-HHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 3567999999 58999999 89999999999999998
No 204
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=87.64 E-value=17 Score=33.42 Aligned_cols=67 Identities=12% Similarity=0.050 Sum_probs=34.5
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEc---CCEEEEEcCCCCCcccCcEEEEec
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVN---GSHLVVFGGCGRQGLLNDVFVLDL 316 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~ 316 (545)
++.+++.|+.+. .+.++|+.+....++.+. .+......-.+..+. ++.+++.|+.+ ..+.+||+
T Consensus 22 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~d~~~l~s~~~d-----g~v~vwd~ 88 (351)
T 3f3f_A 22 YGRHVATCSSDQ------HIKVFKLDKDTSNWELSD--SWRAHDSSIVAIDWASPEYGRIIASASYD-----KTVKLWEE 88 (351)
T ss_dssp SSSEEEEEETTS------EEEEEEECSSSCCEEEEE--EEECCSSCEEEEEECCGGGCSEEEEEETT-----SCEEEEEE
T ss_pred CCCEEEEeeCCC------eEEEEECCCCCCcceecc--eeccCCCcEEEEEEcCCCCCCEEEEEcCC-----CeEEEEec
Confidence 345566666432 677888775533555432 111111222333332 23566777654 35788888
Q ss_pred CCC
Q 042793 317 DAK 319 (545)
Q Consensus 317 ~t~ 319 (545)
.+.
T Consensus 89 ~~~ 91 (351)
T 3f3f_A 89 DPD 91 (351)
T ss_dssp CTT
T ss_pred CCC
Confidence 764
No 205
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=87.60 E-value=19 Score=33.96 Aligned_cols=105 Identities=12% Similarity=0.070 Sum_probs=51.8
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE--cCCEEEEEcCCCCCcccCcEEEEecC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV--NGSHLVVFGGCGRQGLLNDVFVLDLD 317 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~ 317 (545)
+++.++.|+.+. .+.++|+.+. +-...- .... ..-.+..+ .+..+++.|+.++ .+.++|+.
T Consensus 138 dg~~l~sgs~d~------~i~iwd~~~~--~~~~~~--~~h~--~~V~~~~~~~~~~~~l~s~s~D~-----~v~iwd~~ 200 (344)
T 4gqb_B 138 SGTQAVSGSKDI------CIKVWDLAQQ--VVLSSY--RAHA--AQVTCVAASPHKDSVFLSCSEDN-----RILLWDTR 200 (344)
T ss_dssp TSSEEEEEETTS------CEEEEETTTT--EEEEEE--CCCS--SCEEEEEECSSCTTEEEEEETTS-----CEEEEETT
T ss_pred CCCEEEEEeCCC------eEEEEECCCC--cEEEEE--cCcC--CceEEEEecCCCCCceeeecccc-----cccccccc
Confidence 456666676542 6888898875 322111 1111 11122222 3445777777543 58889998
Q ss_pred CCCCceE-eccCCCCCCCCccceEEEE--cCCEEEEEcCCCCCCCccCcEEEEecCCC
Q 042793 318 AKPPTWR-EISGLAPPLPRSWHSSCTL--DGTKLIVSGGCADSGVLLSDTFLLDLSME 372 (545)
Q Consensus 318 t~~~~W~-~~~~~~~~~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 372 (545)
+. +-. .+.. ........++.+ .++++++.|+.+ ..+.+||+...
T Consensus 201 ~~--~~~~~~~~---~~~~~~~~~~~~~p~~~~~l~sg~~d------g~v~~wd~~~~ 247 (344)
T 4gqb_B 201 CP--KPASQIGC---SAPGYLPTSLAWHPQQSEVFVFGDEN------GTVSLVDTKST 247 (344)
T ss_dssp SS--SCEEECC-------CCCEEEEEECSSCTTEEEEEETT------SEEEEEESCC-
T ss_pred cc--ceeeeeec---ceeeccceeeeecCCCCcceEEeccC------CcEEEEECCCC
Confidence 77 322 2211 111111122233 244677777643 35788897543
No 206
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=87.58 E-value=20 Score=34.30 Aligned_cols=155 Identities=15% Similarity=0.061 Sum_probs=70.9
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEec---cCCCCCCccceeEEEEc-C-CEEEEEcCCCCCcccCcEEEE
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVH---VSSPPPGRWGHTLSCVN-G-SHLVVFGGCGRQGLLNDVFVL 314 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~---~~~~~~~r~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~y 314 (545)
++.+++.|+.+. .+.++|+.+. ...... ...+........+..+. + ..+++.|+.+ ..+.++
T Consensus 93 ~~~~l~s~s~dg------~v~vw~~~~~--~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d-----g~i~iw 159 (402)
T 2aq5_A 93 NDNVIASGSEDC------TVMVWEIPDG--GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD-----NVILVW 159 (402)
T ss_dssp CTTEEEEEETTS------EEEEEECCTT--CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT-----SCEEEE
T ss_pred CCCEEEEEeCCC------eEEEEEccCC--CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC-----CEEEEE
Confidence 456777776542 6888888765 221000 00000111112222332 2 2467777654 358999
Q ss_pred ecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceE-EecCCCCCCCCCCcEE
Q 042793 315 DLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWR-EIPVTWTPPSRLGHTL 393 (545)
Q Consensus 315 d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~-~~~~~~~p~~r~~~~~ 393 (545)
|+.+. .....-... .....-.+.+...++.+++.|+.+ ..+.+||+... +-. .+.. ........++
T Consensus 160 d~~~~--~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~--~~~~~~~~--~~~~~~~~~~ 226 (402)
T 2aq5_A 160 DVGTG--AAVLTLGPD-VHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKG--TVVAEKDR--PHEGTRPVHA 226 (402)
T ss_dssp ETTTT--EEEEEECTT-TCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTT--EEEEEEEC--SSCSSSCCEE
T ss_pred ECCCC--CccEEEecC-CCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCC--ceeeeecc--CCCCCcceEE
Confidence 99887 433221000 011111122222234566666542 35889996543 222 1101 1111112344
Q ss_pred EEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 394 SVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 394 ~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
+...++.+++.|..... ...+..||+.
T Consensus 227 ~~~~~~~~l~~g~~~~~------d~~i~iwd~~ 253 (402)
T 2aq5_A 227 VFVSEGKILTTGFSRMS------ERQVALWDTK 253 (402)
T ss_dssp EECSTTEEEEEEECTTC------CEEEEEEETT
T ss_pred EEcCCCcEEEEeccCCC------CceEEEEcCc
Confidence 44455577777632111 3678888987
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=87.42 E-value=16 Score=32.97 Aligned_cols=226 Identities=9% Similarity=-0.048 Sum_probs=109.7
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++.+|+..... ..+++||+. . ++..+.... ....-+.++.-.++++|+.... .+.++.||+. .
T Consensus 72 ~g~l~v~~~~~------~~v~~~d~~-g--~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~-g 134 (300)
T 2qc5_A 72 LGDIWFTENGA------NKIGKLSKK-G--GFTEYPLPQ--PDSGPYGITEGLNGDIWFTQLN-----GDRIGKLTAD-G 134 (300)
T ss_dssp TSCEEEEETTT------TEEEEECTT-S--CEEEEECSS--TTCCEEEEEECSTTCEEEEETT-----TTEEEEECTT-S
T ss_pred CCCEEEEecCC------CeEEEECCC-C--CeEEecCCC--CCCCCccceECCCCCEEEEccC-----CCeEEEECCC-C
Confidence 46788765321 268999987 4 565443211 1122234333334578886532 2368889987 5
Q ss_pred CCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCC-CCCcEEEEECC
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPS-RLGHTLSVYGG 398 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~-r~~~~~~~~~~ 398 (545)
+...+... ......+..+.-.++++|+.... .+.+++|+. +.+...+.. +.. ..-..++.-.+
T Consensus 135 --~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~---~g~~~~~~~---~~~~~~~~~i~~d~~ 198 (300)
T 2qc5_A 135 --TIYEYDLP--NKGSYPAFITLGSDNALWFTENQ------NNSIGRITN---TGKLEEYPL---PTNAAAPVGITSGND 198 (300)
T ss_dssp --CEEEEECS--STTCCEEEEEECTTSSEEEEETT------TTEEEEECT---TCCEEEEEC---SSTTCCEEEEEECTT
T ss_pred --CEEEccCC--CCCCCceeEEECCCCCEEEEecC------CCeEEEECC---CCcEEEeeC---CCCCCCcceEEECCC
Confidence 44433211 01111122222233468886431 135888885 234444431 111 12233333334
Q ss_pred cEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEe-cCCEEEEEcCcCCCC
Q 042793 399 RKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSL-PGGRILIFGGSVAGL 477 (545)
Q Consensus 399 ~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~ 477 (545)
+.+|+.... ...+++||+. .++..... +.......++.+ .+++|||....
T Consensus 199 g~l~v~~~~---------~~~i~~~~~~---g~~~~~~~-------------~~~~~~~~~i~~d~~g~l~v~~~~---- 249 (300)
T 2qc5_A 199 GALWFVEIM---------GNKIGRITTT---GEISEYDI-------------PTPNARPHAITAGKNSEIWFTEWG---- 249 (300)
T ss_dssp SSEEEEETT---------TTEEEEECTT---CCEEEEEC-------------SSTTCCEEEEEECSTTCEEEEETT----
T ss_pred CCEEEEccC---------CCEEEEEcCC---CcEEEEEC-------------CCCCCCceEEEECCCCCEEEeccC----
Confidence 578876432 2568899874 33444321 111112223333 35678887532
Q ss_pred CCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeec
Q 042793 478 HSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLV 543 (545)
Q Consensus 478 ~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~ 543 (545)
.+.+..||+. .+............ -++.+...++.||+.+. + . +++|+++
T Consensus 250 --~~~i~~~~~~---g~~~~~~~~~~~~~---~~~i~~~~~g~l~v~~~-~--~-----i~~~~p~ 299 (300)
T 2qc5_A 250 --ANQIGRITND---NTIQEYQLQTENAE---PHGITFGKDGSVWFALK-C--K-----IGKLNLN 299 (300)
T ss_dssp --TTEEEEECTT---SCEEEEECCSTTCC---CCCEEECTTSCEEEECS-S--E-----EEEEEEC
T ss_pred --CCeEEEECCC---CcEEEEECCccCCc---cceeEeCCCCCEEEEcc-C--c-----eEEeCCC
Confidence 3679999984 34444432111111 13344444677777543 2 2 6777764
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=87.40 E-value=18 Score=38.47 Aligned_cols=193 Identities=11% Similarity=0.118 Sum_probs=92.1
Q ss_pred CceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCC---------cccCcEEEEecCCCCCceEecc
Q 042793 257 NDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQ---------GLLNDVFVLDLDAKPPTWREIS 327 (545)
Q Consensus 257 ~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~---------~~~~~~~~yd~~t~~~~W~~~~ 327 (545)
..++++|+.+. +..... .+.... ...+-..++.||+ +..+.. .....++.+++.+....=..+.
T Consensus 189 ~~i~v~dl~tg--~~~~~~---~~~~~~-~~~~wspD~~l~~-~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~ 261 (741)
T 1yr2_A 189 RTVKFVGVADG--KPLADE---LKWVKF-SGLAWLGNDALLY-SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVF 261 (741)
T ss_dssp EEEEEEETTTC--CEEEEE---EEEEES-CCCEESTTSEEEE-EECCCC--------CCCCCEEEEEETTSCGGGCEEEE
T ss_pred EEEEEEECCCC--CCCCcc---CCCcee-ccEEEECCCEEEE-EEecCcccccccccCCCCCEEEEEECCCCchhCEEEe
Confidence 36999999887 654321 111111 1222222334444 333221 1245688888877621111222
Q ss_pred CCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCc-eEEecCCCCCCCCCCcEEEEECCcEEEEEc
Q 042793 328 GLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPV-WREIPVTWTPPSRLGHTLSVYGGRKILMFG 405 (545)
Q Consensus 328 ~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~-W~~~~~~~~p~~r~~~~~~~~~~~~lyi~G 405 (545)
... ..+......... +|..|++...... ...++++.+|+...... |..+... .... ...+..+++.||+..
T Consensus 262 ~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~--~~~~~~dg~~l~~~s 334 (741)
T 1yr2_A 262 ATP-ELPKRGHGASVSSDGRWVVITSSEGT--DPVNTVHVARVTNGKIGPVTALIPD--LKAQ--WDFVDGVGDQLWFVS 334 (741)
T ss_dssp CCT-TCTTCEEEEEECTTSCEEEEEEECTT--CSCCEEEEEEEETTEECCCEEEECS--SSSC--EEEEEEETTEEEEEE
T ss_pred ccC-CCCeEEEEEEECCCCCEEEEEEEccC--CCcceEEEEECCCCCCcccEEecCC--CCce--EEEEeccCCEEEEEE
Confidence 210 112222222222 4444555443211 12467999997533224 7777531 1111 222233454787775
Q ss_pred ccCCCCCCccccCcEEEEeCCCCC--CceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCce
Q 042793 406 GLAKSGPLRFRSSDVFTMDLSEEE--PCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQL 483 (545)
Q Consensus 406 G~~~~~~~~~~~~~i~~~d~~~~~--~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v 483 (545)
.... ....++.+|+. + ..|+.+... ....-..+...++.+++....+ ....+
T Consensus 335 ~~~~------~~~~l~~~d~~--~~~~~~~~l~~~--------------~~~~l~~~~~~~~~lv~~~~~d----g~~~l 388 (741)
T 1yr2_A 335 GDGA------PLKKIVRVDLS--GSTPRFDTVVPE--------------SKDNLESVGIAGNRLFASYIHD----AKSQV 388 (741)
T ss_dssp CTTC------TTCEEEEEECS--SSSCEEEEEECC--------------CSSEEEEEEEEBTEEEEEEEET----TEEEE
T ss_pred CCCC------CCCEEEEEeCC--CCccccEEEecC--------------CCCeEEEEEEECCEEEEEEEEC----CEEEE
Confidence 4321 13679999987 4 478887533 1111122333377777765533 24578
Q ss_pred EEEcCC
Q 042793 484 YLLDPT 489 (545)
Q Consensus 484 ~~~d~~ 489 (545)
+.+|++
T Consensus 389 ~~~~~~ 394 (741)
T 1yr2_A 389 LAFDLD 394 (741)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 899874
No 209
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=87.09 E-value=14 Score=32.03 Aligned_cols=149 Identities=14% Similarity=0.193 Sum_probs=76.2
Q ss_pred eeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceE--Eecc--CCCCCCccceeEEEEc-CCEEEEEcCCCCCcccC
Q 042793 235 SACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQ--HVHV--SSPPPGRWGHTLSCVN-GSHLVVFGGCGRQGLLN 309 (545)
Q Consensus 235 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~--~~~~--~~~~~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~ 309 (545)
+++...+.+|+|=|. .+|+++.... .+. .+.. ..+|. ....+ .... ++++|+|-| +
T Consensus 28 Ai~~~~g~~y~Fkg~--------~~wr~~~~~~--~~~p~~I~~~wp~Lp~-~iDAa-~~~~~~~~iyfFkG-------~ 88 (207)
T 1pex_A 28 AITSLRGETMIFKDR--------FFWRLHPQQV--DAELFLTKSFWPELPN-RIDAA-YEHPSHDLIFIFRG-------R 88 (207)
T ss_dssp EEEEETTEEEEEETT--------EEEEECSSSS--CCEEEEHHHHCTTSCS-SCCEE-EEETTTTEEEEEET-------T
T ss_pred EEEeCCCcEEEEECC--------EEEEEeCCCc--CCCceehhHhccCCCC-CccEE-EEeccCCcEEEEcc-------C
Confidence 445678999999773 6788876443 332 1111 13342 22222 2232 468999977 4
Q ss_pred cEEEEecCCCCCce-EeccCCCCCC-CCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceE-----EecC
Q 042793 310 DVFVLDLDAKPPTW-REISGLAPPL-PRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWR-----EIPV 381 (545)
Q Consensus 310 ~~~~yd~~t~~~~W-~~~~~~~~~~-~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~-----~~~~ 381 (545)
.+|+|+-.+-..-+ ..|.....|. +..-.++... .++++|+|-| +..|+||.... +-. .+..
T Consensus 89 ~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG--------~~ywr~d~~~~--~~d~gyPr~i~~ 158 (207)
T 1pex_A 89 KFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG--------NQVWRYDDTNH--IMDKDYPRLIEE 158 (207)
T ss_dssp EEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET--------TEEEEEETTTT--EECSSCCCBHHH
T ss_pred EEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC--------CEEEEEeCcCc--cccCCCCccHHH
Confidence 57888643220011 1333321121 1122233333 2369999977 34799985321 110 0110
Q ss_pred --CCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 382 --TWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 382 --~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.++| ... .++...++ ++|+|-| +..|+||..
T Consensus 159 ~~~Gip-~~i-DaAf~~~g-~~YfFkg-----------~~y~rf~~~ 191 (207)
T 1pex_A 159 DFPGIG-DKV-DAVYEKNG-YIYFFNG-----------PIQFEYSIW 191 (207)
T ss_dssp HSTTSC-SCC-SEEEEETT-EEEEEET-----------TEEEEEETT
T ss_pred cCCCCC-CCc-cEEEEcCC-cEEEEEC-----------CEEEEEeCC
Confidence 1233 223 33334555 9999966 678999986
No 210
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=86.85 E-value=20 Score=33.40 Aligned_cols=150 Identities=11% Similarity=0.122 Sum_probs=71.4
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCce-EEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEW-QHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W-~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
+.+++.|+.+. .+.++|+.+....- ..+. .. ...-..+.+ .++..++.|+.+ ..+.++|+.+
T Consensus 54 g~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~--~h---~~~v~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~ 117 (368)
T 3mmy_A 54 GNFLIAGSWAN------DVRCWEVQDSGQTIPKAQQ--MH---TGPVLDVCWSDDGSKVFTASCD-----KTAKMWDLSS 117 (368)
T ss_dssp SEEEEEEETTS------EEEEEEECTTSCEEEEEEE--EC---SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTT
T ss_pred ceEEEEECCCC------cEEEEEcCCCCceeEEEec--cc---cCCEEEEEECcCCCEEEEEcCC-----CcEEEEEcCC
Confidence 37777777542 68888887631122 1111 11 111222223 233455666543 3688999988
Q ss_pred CCCceEeccCCCCCCCCccceEEE--EcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEE
Q 042793 319 KPPTWREISGLAPPLPRSWHSSCT--LDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVY 396 (545)
Q Consensus 319 ~~~~W~~~~~~~~~~~r~~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 396 (545)
. ....+... ..+ -.+... ..++.+++.|+.+ ..+.+||+........ +.. + ....++...
T Consensus 118 ~--~~~~~~~~--~~~--v~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~-~~~---~--~~~~~~~~~ 179 (368)
T 3mmy_A 118 N--QAIQIAQH--DAP--VKTIHWIKAPNYSCVMTGSWD------KTLKFWDTRSSNPMMV-LQL---P--ERCYCADVI 179 (368)
T ss_dssp T--EEEEEEEC--SSC--EEEEEEEECSSCEEEEEEETT------SEEEEECSSCSSCSEE-EEC---S--SCEEEEEEE
T ss_pred C--Cceeeccc--cCc--eEEEEEEeCCCCCEEEEccCC------CcEEEEECCCCcEEEE-Eec---C--CCceEEEec
Confidence 7 54433221 111 112222 2344666666643 3588899765432222 221 1 122233334
Q ss_pred CCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEe
Q 042793 397 GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCV 435 (545)
Q Consensus 397 ~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v 435 (545)
.+ .+++.++ ...+..|+.......+..+
T Consensus 180 ~~-~~~~~~~----------~~~i~~~~~~~~~~~~~~~ 207 (368)
T 3mmy_A 180 YP-MAVVATA----------ERGLIVYQLENQPSEFRRI 207 (368)
T ss_dssp TT-EEEEEEG----------GGCEEEEECSSSCEEEEEC
T ss_pred CC-eeEEEeC----------CCcEEEEEeccccchhhhc
Confidence 44 4444433 3567778876433344443
No 211
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=86.77 E-value=0.59 Score=45.16 Aligned_cols=43 Identities=12% Similarity=0.004 Sum_probs=34.0
Q ss_pred CCCcccCCCC-ccccccCcccc-hhhHHHHHhhccCChhhhhhHH
Q 042793 118 NRTFPIGDRN-VCREVCGIFQL-SDEVISLKILSWLSPRDIASVG 160 (545)
Q Consensus 118 ~~~~~~g~~~-~~~~~~~~~~l-p~~~~~~~~~~~l~~~~~~~~~ 160 (545)
...+.+|... +|++.+.++|+ |+|+++..+..++.|+|...+.
T Consensus 255 ~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~ 299 (361)
T 4f3l_A 255 SRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLA 299 (361)
T ss_dssp EEECTTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHH
T ss_pred EEEcCCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHH
Confidence 3345566664 89999999999 9999988899999998887543
No 212
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=86.42 E-value=35 Score=35.79 Aligned_cols=226 Identities=11% Similarity=0.020 Sum_probs=102.0
Q ss_pred ECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCC-CCCC-ccceeEEEE--cCCEEEEEcCCCCCcccCcEEEE
Q 042793 239 VGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSS-PPPG-RWGHTLSCV--NGSHLVVFGGCGRQGLLNDVFVL 314 (545)
Q Consensus 239 ~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~-~~~~-r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~y 314 (545)
.++++|.+--.. ......+|+.+.... .|+.+...+ +... ........+ ++ +.+++.-.........++++
T Consensus 78 dG~~~~~~~~~~--~~~~~~l~~~~~~~~--~~~~l~d~~~~a~~~~~~~~~~~~SPDG-~~la~~~~~~G~~~~~i~v~ 152 (695)
T 2bkl_A 78 RNGRFFYVRTHK--DKEKAILYWRQGESG--QEKVLLDPNGWSKDGTVSLGTWAVSWDG-KKVAFAQKPNAADEAVLHVI 152 (695)
T ss_dssp ETTEEEEEEECT--TCSSCEEEEEESTTS--CCEEEECGGGSSSSSCEEEEEEEECTTS-SEEEEEEEETTCSCCEEEEE
T ss_pred ECCEEEEEEEcC--CCeEEEEEEEcCCCC--CcEEEEchHHhccCCCEEEEEEEECCCC-CEEEEEECCCCCceEEEEEE
Confidence 456666554221 122347888887665 777764211 1111 111111122 44 44444322111123579999
Q ss_pred ecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCC-------CccCcEEEEecCCCCCceEEecCCCCCCC
Q 042793 315 DLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSG-------VLLSDTFLLDLSMEKPVWREIPVTWTPPS 387 (545)
Q Consensus 315 d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~-------~~~~~~~~~d~~~~~~~W~~~~~~~~p~~ 387 (545)
|+.++ ........ +.... ...+...+++.++++..+..+ .....++.+++.+....-..+... ...+
T Consensus 153 dl~tg--~~~~~~~~--~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~-~~~~ 226 (695)
T 2bkl_A 153 DVDSG--EWSKVDVI--EGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER-TGDP 226 (695)
T ss_dssp ETTTC--CBCSSCCB--SCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC-CCCT
T ss_pred ECCCC--CCcCCccc--Ccccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec-CCCC
Confidence 99998 54311111 11111 122233344555554432211 124468999876442212233221 1111
Q ss_pred CCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEE
Q 042793 388 RLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRI 467 (545)
Q Consensus 388 r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l 467 (545)
....+...-.+++.+++....... .+++|.+|.. +.+|+.+... .. .....+. .++.+
T Consensus 227 ~~~~~~~~SpDG~~l~~~~~~~~~-----~~~l~~~~~~--~~~~~~l~~~-------------~~-~~~~~~~-~~g~l 284 (695)
T 2bkl_A 227 TTFLQSDLSRDGKYLFVYILRGWS-----ENDVYWKRPG--EKDFRLLVKG-------------VG-AKYEVHA-WKDRF 284 (695)
T ss_dssp TCEEEEEECTTSCCEEEEEEETTT-----EEEEEEECTT--CSSCEEEEEC-------------SS-CCEEEEE-ETTEE
T ss_pred EEEEEEEECCCCCEEEEEEeCCCC-----ceEEEEEcCC--CCceEEeecC-------------CC-ceEEEEe-cCCcE
Confidence 222333333333544444332211 4689988876 5678877643 11 1111222 35665
Q ss_pred EEEcCcCCCCCCCCceEEEcCCCCC-CceEEecc
Q 042793 468 LIFGGSVAGLHSATQLYLLDPTEEK-PTWRILNV 500 (545)
Q Consensus 468 ~v~GG~~~~~~~~~~v~~~d~~~~~-~~W~~~~~ 500 (545)
|+....+ .....++.+|+++.. ..|+.+..
T Consensus 285 ~~~s~~~---~~~~~l~~~d~~~~~~~~~~~l~~ 315 (695)
T 2bkl_A 285 YVLTDEG---APRQRVFEVDPAKPARASWKEIVP 315 (695)
T ss_dssp EEEECTT---CTTCEEEEEBTTBCSGGGCEEEEC
T ss_pred EEEECCC---CCCCEEEEEeCCCCCccCCeEEec
Confidence 5553322 124679999986321 23888743
No 213
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=86.19 E-value=22 Score=33.17 Aligned_cols=238 Identities=13% Similarity=0.075 Sum_probs=113.2
Q ss_pred CceEEEeCCCCCCceEEecc-CCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccC-C---CC
Q 042793 257 NDTFVLDLNSSNPEWQHVHV-SSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISG-L---AP 331 (545)
Q Consensus 257 ~~~~~~d~~t~~~~W~~~~~-~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~-~---~~ 331 (545)
+.++++|+.+. +...... ..+..| +.+++-.++++|+.... .+.+.+||+......-..+.. . ..
T Consensus 69 ~~i~~~d~~~g--~~~~~~~~~~~~~p---~gia~d~~g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~g~~ 138 (329)
T 3fvz_A 69 DTILVIDPNNA--EILQSSGKNLFYLP---HGLSIDTDGNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQPGSD 138 (329)
T ss_dssp CCEEEECTTTC--CEEEEECTTTCSSE---EEEEECTTSCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBCCCS
T ss_pred CcEEEEECCCC--eEEeccCCCccCCc---eEEEECCCCCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCCCCC
Confidence 36899999876 4433221 111122 33333334468887643 246889998654101112211 0 00
Q ss_pred CCCCccceEEEEc--CCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCC-----CCC-CCCcEEEEECC-cEEE
Q 042793 332 PLPRSWHSSCTLD--GTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWT-----PPS-RLGHTLSVYGG-RKIL 402 (545)
Q Consensus 332 ~~~r~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~-----p~~-r~~~~~~~~~~-~~ly 402 (545)
.........++++ ++.+||..+.. .+.+.+|+.+ ...-..+..... +.. ..-+.+++-.+ +.||
T Consensus 139 ~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~--g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~ 211 (329)
T 3fvz_A 139 QNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPS--GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLC 211 (329)
T ss_dssp TTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTT--SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEE
T ss_pred ccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCC--CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEE
Confidence 1111122234443 56899987521 1458888842 223333321100 111 11234444443 5999
Q ss_pred EEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCC-CCCCC
Q 042793 403 MFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAG-LHSAT 481 (545)
Q Consensus 403 i~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~-~~~~~ 481 (545)
+.... ...|.+||+. +.+....-.. +..-....++....+.+|+..|...- .....
T Consensus 212 v~d~~---------~~~I~~~~~~--~G~~~~~~~~------------~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~ 268 (329)
T 3fvz_A 212 VADRE---------NGRIQCFKTD--TKEFVREIKH------------ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPV 268 (329)
T ss_dssp EEETT---------TTEEEEEETT--TCCEEEEECC------------TTTTTCEEEEEEETTEEEEEECCCCTTCSCCC
T ss_pred EEECC---------CCEEEEEECC--CCcEEEEEec------------cccCCCcceeeecCCEEEEeCCCEEeccCCCc
Confidence 98654 3678999987 4445433221 11111122333334677777664321 12245
Q ss_pred ceEEEcCCCCCCceEEeccCCCCC-CCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeecc
Q 042793 482 QLYLLDPTEEKPTWRILNVPGRPP-RFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 482 ~v~~~d~~~~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
.++.+|+.+ .+....- +..+ ....-...++..++.|||....+ +.|++|+++.
T Consensus 269 ~v~~~~~~~--g~~~~~~--~~~~~~~~~p~~ia~~~dG~lyvad~~~------~~I~~~~~~~ 322 (329)
T 3fvz_A 269 QGFVMNFSS--GEIIDVF--KPVRKHFDMPHDIVASEDGTVYIGDAHT------NTVWKFTLTE 322 (329)
T ss_dssp CEEEEETTT--CCEEEEE--CCSSSCCSSEEEEEECTTSEEEEEESSS------CCEEEEEEEE
T ss_pred EEEEEEcCC--CeEEEEE--cCCCCccCCeeEEEECCCCCEEEEECCC------CEEEEEeCCc
Confidence 789999863 3322221 1111 11112334444467888876443 4578887754
No 214
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=86.10 E-value=21 Score=32.91 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=14.0
Q ss_pred CCeeEEEEcCCCCcccccccceeeeecc
Q 042793 517 GGTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 517 ~~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
.++++++.||.++ .|.++|+.+
T Consensus 316 ~dg~~l~sgs~Dg------~v~iW~~~t 337 (340)
T 4aow_A 316 ADGQTLFAGYTDN------LVRVWQVTI 337 (340)
T ss_dssp TTSSEEEEEETTS------CEEEEEEEC
T ss_pred CCCCEEEEEeCCC------EEEEEeCCC
Confidence 4667778887764 366666653
No 215
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=86.04 E-value=16 Score=31.43 Aligned_cols=153 Identities=12% Similarity=0.125 Sum_probs=76.9
Q ss_pred eeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceE--Eecc--CCCCCCccceeEEEEcCCEEEEEcCCCCCcccCc
Q 042793 235 SACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQ--HVHV--SSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLND 310 (545)
Q Consensus 235 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~--~~~~--~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~ 310 (545)
+++.+.+++|+|=|. .+|+++......... .+.. ..+|. ....+.....++++|+|-| +.
T Consensus 11 Ai~~~~g~~yfFkg~--------~~Wr~~~~~~~~~~~p~~Is~~w~glP~-~IDAa~~~~~~~~~yfFkG-------~~ 74 (195)
T 1itv_A 11 AIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPR-KLDSVFEEPLSKKLFFFSG-------RQ 74 (195)
T ss_dssp EEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCS-SCSEEEECTTTCCEEEEET-------TE
T ss_pred EEEEeCCEEEEEECC--------EEEEEECCccccCCCcEEhhhccCCCCC-CccEEEEECCCCeEEEEeC-------CE
Confidence 455679999999873 678887643100222 1110 13443 2222221112458999987 45
Q ss_pred EEEEecCCCCCceEeccCCCCCCC-CccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCc--e-EEecC--CCC
Q 042793 311 VFVLDLDAKPPTWREISGLAPPLP-RSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPV--W-REIPV--TWT 384 (545)
Q Consensus 311 ~~~yd~~t~~~~W~~~~~~~~~~~-r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~--W-~~~~~--~~~ 384 (545)
.|+|+..+-. .=+.+.....|.. ..-.++....++++|+|-|. ..|.||....+.. . ..+.. .+.
T Consensus 75 yw~~~~~~~~-~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg~--------~ywr~d~~~~~~~~gyPr~i~~~w~Gv 145 (195)
T 1itv_A 75 VWVYTGASVL-GPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR--------RLWRFDVKAQMVDPRSASEVDRMFPGV 145 (195)
T ss_dssp EEEEETTEEE-EEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT--------EEEEEETTTTEECGGGCEEHHHHSTTS
T ss_pred EEEEcCCccC-CCEEeeecccCCCccceeEEEEcCCCeEEEEeCC--------EEEEEeCCcccccCCCccChhhcCCCC
Confidence 7888754320 1112322212221 12223333445699999762 4789995322100 0 11111 123
Q ss_pred CCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 385 PPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 385 p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
|. .-.++...++ .+|++-| +..|+||..
T Consensus 146 p~--~idaa~~~~g-~~Yffkg-----------~~y~~~~~~ 173 (195)
T 1itv_A 146 PL--DTHDVFQFRE-KAYFCQD-----------RFYWRVSSR 173 (195)
T ss_dssp CS--SCSEEEEETT-EEEEEET-----------TEEEEEECC
T ss_pred CC--CCCEEEEeCC-eEEEEeC-----------CEEEEEECC
Confidence 32 2334445565 9999976 678899987
No 216
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=85.99 E-value=22 Score=33.09 Aligned_cols=104 Identities=9% Similarity=-0.048 Sum_probs=50.1
Q ss_pred EEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEE-c-CCEEEEEcCCCCCCCccCcEEEEecCCC
Q 042793 295 HLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL-D-GTKLIVSGGCADSGVLLSDTFLLDLSME 372 (545)
Q Consensus 295 ~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 372 (545)
.+++.|+.+ ..+.+||+.+..... .+... .. .-.++.+ . ++.+++.|+.+ ..+.++|+...
T Consensus 86 ~~l~~~~~d-----g~i~v~d~~~~~~~~-~~~~~--~~---~i~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~ 148 (366)
T 3k26_A 86 PLLAVAGSR-----GIIRIINPITMQCIK-HYVGH--GN---AINELKFHPRDPNLLLSVSKD------HALRLWNIQTD 148 (366)
T ss_dssp EEEEEEETT-----CEEEEECTTTCCEEE-EEESC--CS---CEEEEEECSSCTTEEEEEETT------SCEEEEETTTT
T ss_pred CEEEEecCC-----CEEEEEEchhceEee-eecCC--CC---cEEEEEECCCCCCEEEEEeCC------CeEEEEEeecC
Confidence 567777654 368899988762111 12211 11 1112223 2 44666776642 35888997543
Q ss_pred CCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 373 KPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 373 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
+-...-.........-.+++...++..++.|+. ...+..||+.
T Consensus 149 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~ 191 (366)
T 3k26_A 149 --TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM---------DHSLKLWRIN 191 (366)
T ss_dssp --EEEEEECSTTSCSSCEEEEEECTTSSEEEEEET---------TSCEEEEESC
T ss_pred --eEEEEecccccccCceeEEEECCCCCEEEEecC---------CCCEEEEECC
Confidence 322221000111112223333344456666664 2567778876
No 217
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=85.98 E-value=21 Score=33.09 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCC
Q 042793 293 GSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSM 371 (545)
Q Consensus 293 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 371 (545)
++++|+.++.+ +.++++|+.+. +....-.. +.....+..+.. +++.+|+.+.. ...++++|+.+
T Consensus 10 ~~~~~v~~~~~-----~~v~~~d~~~~--~~~~~~~~--~~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t 74 (349)
T 1jmx_B 10 GHEYMIVTNYP-----NNLHVVDVASD--TVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDT 74 (349)
T ss_dssp TCEEEEEEETT-----TEEEEEETTTT--EEEEEEEC--SSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTT
T ss_pred CCEEEEEeCCC-----CeEEEEECCCC--cEEEEEec--CCCCCCceeEECCCCCEEEEEeCC------CCcEEEEeCCC
Confidence 45788877643 46899999887 44322111 110011222222 45567877642 14689999654
Q ss_pred C
Q 042793 372 E 372 (545)
Q Consensus 372 ~ 372 (545)
.
T Consensus 75 ~ 75 (349)
T 1jmx_B 75 C 75 (349)
T ss_dssp T
T ss_pred C
Confidence 3
No 218
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=85.78 E-value=52 Score=37.17 Aligned_cols=62 Identities=8% Similarity=0.031 Sum_probs=34.2
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceE-EeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQ-HVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLD 317 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~ 317 (545)
++++++.||.+. .+.++|..+. +-. .+. . ......++.+ .+++.++.|+.+ ..+.++|+.
T Consensus 626 ~~~~l~s~~~d~------~i~vw~~~~~--~~~~~~~--~---h~~~v~~~~~s~~~~~l~s~~~d-----~~v~vwd~~ 687 (1249)
T 3sfz_A 626 DGQRIASCGADK------TLQVFKAETG--EKLLDIK--A---HEDEVLCCAFSSDDSYIATCSAD-----KKVKIWDSA 687 (1249)
T ss_dssp TSSEEEEEETTS------CEEEEETTTC--CEEEEEC--C---CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETT
T ss_pred CCCEEEEEeCCC------eEEEEECCCC--CEEEEec--c---CCCCEEEEEEecCCCEEEEEeCC-----CeEEEEECC
Confidence 456666776432 6889998876 322 221 1 1111222233 333566666643 358999998
Q ss_pred CC
Q 042793 318 AK 319 (545)
Q Consensus 318 t~ 319 (545)
+.
T Consensus 688 ~~ 689 (1249)
T 3sfz_A 688 TG 689 (1249)
T ss_dssp TC
T ss_pred CC
Confidence 87
No 219
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=85.83 E-value=0.16 Score=47.96 Aligned_cols=33 Identities=9% Similarity=-0.187 Sum_probs=27.4
Q ss_pred eeEEEEEEEeecCCCCEEEEEEEeeeeeecccCC
Q 042793 61 LMNRLRLSPIYGDDETITHVIGIQFFTEANVDLG 94 (545)
Q Consensus 61 ~w~~~~~~pi~d~~g~~~~~i~~~~Dite~~~~~ 94 (545)
.++.++..|+.+ +|.+.+++.+++|||+.++.+
T Consensus 258 ~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE 290 (305)
T 2ykf_A 258 ATVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRD 290 (305)
Confidence 466788899987 578888999999999999663
No 220
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=85.64 E-value=21 Score=32.64 Aligned_cols=187 Identities=12% Similarity=0.129 Sum_probs=86.1
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCce-EEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEW-QHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W-~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
++++++.|+.+. .+.++|+.+. +- ..+. ... ..-.+++...++.+++.|+.+ ..+.++|..+
T Consensus 66 ~~~~l~s~s~d~------~i~vwd~~~~--~~~~~~~--~h~--~~v~~~~~~~~~~~l~sgs~D-----~~v~lWd~~~ 128 (304)
T 2ynn_A 66 RKNWIIVGSDDF------RIRVFNYNTG--EKVVDFE--AHP--DYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWEN 128 (304)
T ss_dssp GGTEEEEEETTS------EEEEEETTTC--CEEEEEE--CCS--SCEEEEEECSSSSEEEEEETT-----SCEEEEEGGG
T ss_pred CCCEEEEECCCC------EEEEEECCCC--cEEEEEe--CCC--CcEEEEEEcCCCCEEEEECCC-----CeEEEEECCC
Confidence 445666666432 6888898775 32 2222 111 111222222334566667654 3578888876
Q ss_pred CCCceEeccCCCCCCCCccceEEEEc--CCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEE
Q 042793 319 KPPTWREISGLAPPLPRSWHSSCTLD--GTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVY 396 (545)
Q Consensus 319 ~~~~W~~~~~~~~~~~r~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 396 (545)
+ +....... .....-.++.+. +..+++.|+.+ ..+.++|+............ . .+....+...
T Consensus 129 ~---~~~~~~~~--~h~~~v~~v~~~p~~~~~l~sgs~D------~~v~iwd~~~~~~~~~~~~~--~--~~~v~~~~~~ 193 (304)
T 2ynn_A 129 N---WALEQTFE--GHEHFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTG--Q--ERGVNYVDYY 193 (304)
T ss_dssp T---TEEEEEEC--CCCSCEEEEEECTTCTTEEEEEETT------SEEEEEETTCSSCSEEEECC--C--TTCEEEEEEC
T ss_pred C---cchhhhhc--ccCCcEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCccceeccC--C--cCcEEEEEEE
Confidence 4 22211110 001111223332 33567777653 35788887543323322211 1 1111111111
Q ss_pred --CCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEE-ecCCEEEEEcCc
Q 042793 397 --GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVS-LPGGRILIFGGS 473 (545)
Q Consensus 397 --~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~-~~~~~l~v~GG~ 473 (545)
.++.+++.|+. ...|..+|+. +.+- +..+ ......-.++. ..++.+++.|+.
T Consensus 194 ~~~~~~~l~s~s~---------D~~i~iWd~~--~~~~--~~~~------------~~h~~~v~~~~~~p~~~~l~s~s~ 248 (304)
T 2ynn_A 194 PLPDKPYMITASD---------DLTIKIWDYQ--TKSC--VATL------------EGHMSNVSFAVFHPTLPIIISGSE 248 (304)
T ss_dssp CSTTCCEEEEEET---------TSEEEEEETT--TTEE--EEEE------------ECCSSCEEEEEECSSSSEEEEEET
T ss_pred EcCCCCEEEEEcC---------CCeEEEEeCC--CCcc--ceee------------CCCCCCEEEEEECCCCCEEEEEcC
Confidence 23356666664 2567788887 4332 2221 01111112222 335667777775
Q ss_pred CCCCCCCCceEEEcCC
Q 042793 474 VAGLHSATQLYLLDPT 489 (545)
Q Consensus 474 ~~~~~~~~~v~~~d~~ 489 (545)
+ ..+.+||+.
T Consensus 249 D------g~i~iWd~~ 258 (304)
T 2ynn_A 249 D------GTLKIWNSS 258 (304)
T ss_dssp T------SCEEEEETT
T ss_pred C------CeEEEEECC
Confidence 4 458888986
No 221
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=85.44 E-value=23 Score=40.11 Aligned_cols=186 Identities=6% Similarity=-0.022 Sum_probs=86.5
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++..++.|+.+ ..+.+||..+. +..... ....... .+++...+++.++.|+.+ ..+.++|..+.
T Consensus 972 ~g~~l~~g~~~------g~i~i~d~~~~--~~~~~~--~~h~~~v-~~l~~s~dg~~l~s~~~d-----g~i~vwd~~~~ 1035 (1249)
T 3sfz_A 972 HLEYVAFGDED------GAIKIIELPNN--RVFSSG--VGHKKAV-RHIQFTADGKTLISSSED-----SVIQVWNWQTG 1035 (1249)
T ss_dssp TSSEEEEEETT------SCCEEEETTTT--SCEEEC--CCCSSCC-CCEEECSSSSCEEEECSS-----SBEEEEETTTT
T ss_pred CCCEEEEEcCC------CCEEEEEcCCC--ceeeec--ccCCCce-EEEEECCCCCEEEEEcCC-----CEEEEEECCCC
Confidence 44566666543 26888888765 332211 1111111 122222233566666643 36889999887
Q ss_pred CCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCc
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGR 399 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 399 (545)
....+... . ..-.+.....+ ..++.|+.+ ..+.++|+.+...... +.. .... -.+++...++
T Consensus 1036 --~~~~~~~~--~--~~v~~~~~~~~-~~l~~~~~d------g~v~vwd~~~~~~~~~-~~~--~~~~--v~~~~~s~d~ 1097 (1249)
T 3sfz_A 1036 --DYVFLQAH--Q--ETVKDFRLLQD-SRLLSWSFD------GTVKVWNVITGRIERD-FTC--HQGT--VLSCAISSDA 1097 (1249)
T ss_dssp --EEECCBCC--S--SCEEEEEECSS-SEEEEEESS------SEEEEEETTTTCCCEE-EEC--CSSC--CCCEEECSSS
T ss_pred --ceEEEecC--C--CcEEEEEEcCC-CcEEEEECC------CcEEEEECCCCceeEE-Ecc--cCCc--EEEEEECCCC
Confidence 55433321 1 11112222233 344555532 3588899764432222 221 1111 1223333344
Q ss_pred EEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEE-EecCCEEEEEcCcCCCCC
Q 042793 400 KILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAV-SLPGGRILIFGGSVAGLH 478 (545)
Q Consensus 400 ~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~-~~~~~~l~v~GG~~~~~~ 478 (545)
.+++.|+.+ ..+..||.. +.+ .+... ......-.++ ...++++++.|+.+
T Consensus 1098 ~~l~s~s~d---------~~v~iwd~~--~~~--~~~~l------------~~h~~~v~~~~~s~dg~~lat~~~d---- 1148 (1249)
T 3sfz_A 1098 TKFSSTSAD---------KTAKIWSFD--LLS--PLHEL------------KGHNGCVRCSAFSLDGILLATGDDN---- 1148 (1249)
T ss_dssp SSCEEECCS---------SCCCEECSS--SSS--CSBCC------------CCCSSCEEEEEECSSSSEEEEEETT----
T ss_pred CEEEEEcCC---------CcEEEEECC--Ccc--eeeee------------ccCCCcEEEEEECCCCCEEEEEeCC----
Confidence 666666653 445566765 222 11111 1111111222 23367788888754
Q ss_pred CCCceEEEcCCC
Q 042793 479 SATQLYLLDPTE 490 (545)
Q Consensus 479 ~~~~v~~~d~~~ 490 (545)
..+.+||+.+
T Consensus 1149 --g~i~vwd~~~ 1158 (1249)
T 3sfz_A 1149 --GEIRIWNVSD 1158 (1249)
T ss_dssp --SCCCEEESSS
T ss_pred --CEEEEEECCC
Confidence 3477888863
No 222
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=85.38 E-value=0.53 Score=37.43 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=51.6
Q ss_pred cccccCCCC-cccCCCCCCCCCCCCCCH--HHHHHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCC-CCEEEE
Q 042793 5 GAETNDGIR-FLQCRGPFAKRRHPLVDS--SVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDD-ETITHV 80 (545)
Q Consensus 5 ~~~~g~~~~-~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~-g~~~~~ 80 (545)
+|++|+.|- |++. ++.. ...+...+.+..|...+.-++.+.|||..+|+......+++.- .++-.+
T Consensus 36 qdLlGrsiy~f~H~----------~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~V~~qT~sk~f~np~t~e~e~I 105 (132)
T 1oj5_A 36 EDLVRKCIYAFFQP----------QGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSAHTRCKLCYPQSPDMQPFI 105 (132)
T ss_dssp HHHHHHHHHHHTSC----------BTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEEEEEEEEEECC----CCCEE
T ss_pred HHHHHHHHHHHhCc----------ccchHHHHHHHHHHHHHcCCccccceEEEecCCcEEEEEEEEEEecCCCCCCCCEE
Confidence 688888765 3333 2433 6677788888887777777888899999999998888888753 344455
Q ss_pred EEEeeeeeecc
Q 042793 81 IGIQFFTEANV 91 (545)
Q Consensus 81 i~~~~Dite~~ 91 (545)
|++..=+.+.-
T Consensus 106 vs~n~v~r~~~ 116 (132)
T 1oj5_A 106 MGIHIIDREHS 116 (132)
T ss_dssp EEEEEEECC--
T ss_pred EEEEEEEcCCC
Confidence 67666555433
No 223
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=85.37 E-value=31 Score=34.16 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=36.7
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++++|+|-|. ..|+||..+. +...-.-..+| .. -++.... +++|+|-| +..|.||..+.
T Consensus 158 ~~~~yfFkG~--------~yw~yd~~~~--~~~~~~w~gi~--~i-DAA~~~~-g~~YfFkG-------~~y~rfd~~~~ 216 (460)
T 1qhu_A 158 DEGILFFQGN--------RKWFWDLTTG--TKKERSWPAVG--NC-TSALRWL-GRYYCFQG-------NQFLRFNPVSG 216 (460)
T ss_dssp SSEEEEEETT--------EEEEEETTTT--EEEEECCTTSC--CC-SEEEEET-TEEEEEET-------TEEEEECTTTC
T ss_pred CCeEEEEecc--------cEEEEecccc--eeecccCCCCC--cc-chheeeC-CceEEEEC-------CEEEEEcCccC
Confidence 6788999873 6899998765 44321112333 22 2333344 58999987 45788887654
No 224
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=85.36 E-value=21 Score=32.21 Aligned_cols=186 Identities=7% Similarity=-0.033 Sum_probs=92.1
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++.+|+....+ ..+++||+. . .+....... ....-+.++.-.++.+|+.... ...++.||+. .
T Consensus 25 ~g~l~v~~~~~------~~v~~~d~~-~--~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~-g 87 (299)
T 2z2n_A 25 KGKVWITQHKA------NMISCINLD-G--KITEYPLPT--PDAKVMCLTISSDGEVWFTENA-----ANKIGRITKK-G 87 (299)
T ss_dssp TSCEEEEETTT------TEEEEECTT-C--CEEEEECSS--TTCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-S
T ss_pred CCCEEEEecCC------CcEEEEcCC-C--CeEEecCCc--ccCceeeEEECCCCCEEEeCCC-----CCeEEEECCC-C
Confidence 46787754311 268999987 5 666543111 1112233333234578886432 1358889886 3
Q ss_pred CCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCc
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGR 399 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 399 (545)
+...+... .....-+..+.-.++.+|+.... .+.++++|. +.+...... ......-.+++...++
T Consensus 88 --~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~---~g~~~~~~~--~~~~~~~~~i~~~~~g 152 (299)
T 2z2n_A 88 --IIKEYTLP--NPDSAPYGITEGPNGDIWFTEMN------GNRIGRITD---DGKIREYEL--PNKGSYPSFITLGSDN 152 (299)
T ss_dssp --CEEEEECS--STTCCEEEEEECTTSCEEEEETT------TTEEEEECT---TCCEEEEEC--SSTTCCEEEEEECTTS
T ss_pred --cEEEEeCC--CcCCCceeeEECCCCCEEEEecC------CceEEEECC---CCCEEEecC--CCCCCCCceEEEcCCC
Confidence 44444311 01112222333234578886532 135788885 224444321 1111222344444455
Q ss_pred EEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEe-cCCEEEEEcCcCCCCC
Q 042793 400 KILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSL-PGGRILIFGGSVAGLH 478 (545)
Q Consensus 400 ~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~ 478 (545)
.+|+.... ...+++||+. .+...+.. +........+.+ .++++|+....
T Consensus 153 ~l~v~~~~---------~~~i~~~~~~---g~~~~~~~-------------~~~~~~~~~i~~~~~g~l~v~~~~----- 202 (299)
T 2z2n_A 153 ALWFTENQ---------NNAIGRITES---GDITEFKI-------------PTPASGPVGITKGNDDALWFVEII----- 202 (299)
T ss_dssp CEEEEETT---------TTEEEEECTT---CCEEEEEC-------------SSTTCCEEEEEECTTSSEEEEETT-----
T ss_pred CEEEEeCC---------CCEEEEEcCC---CcEEEeeC-------------CCCCCcceeEEECCCCCEEEEccC-----
Confidence 78876431 3678899983 33444321 111111223333 35778886432
Q ss_pred CCCceEEEcC
Q 042793 479 SATQLYLLDP 488 (545)
Q Consensus 479 ~~~~v~~~d~ 488 (545)
.+.+++||+
T Consensus 203 -~~~i~~~~~ 211 (299)
T 2z2n_A 203 -GNKIGRITT 211 (299)
T ss_dssp -TTEEEEECT
T ss_pred -CceEEEECC
Confidence 357899998
No 225
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=85.36 E-value=23 Score=32.70 Aligned_cols=105 Identities=7% Similarity=0.105 Sum_probs=50.0
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCc--eEEeccCCCCCCccceeEEEEcCCE-EEEEcCCCCCcccCcEEEEec
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPE--WQHVHVSSPPPGRWGHTLSCVNGSH-LVVFGGCGRQGLLNDVFVLDL 316 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~--W~~~~~~~~~~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~ 316 (545)
++.+++.|+.+ ..+.++|+.+.... ...+. ... ..-.+++...++. .++.|+.+ ..+.+||+
T Consensus 22 ~~~~l~~~~~d------~~v~iw~~~~~~~~~~~~~~~--~~~--~~v~~~~~~~~~~~~l~~~~~d-----g~i~~wd~ 86 (342)
T 1yfq_A 22 SKSLLLITSWD------GSLTVYKFDIQAKNVDLLQSL--RYK--HPLLCCNFIDNTDLQIYVGTVQ-----GEILKVDL 86 (342)
T ss_dssp GGTEEEEEETT------SEEEEEEEETTTTEEEEEEEE--ECS--SCEEEEEEEESSSEEEEEEETT-----SCEEEECS
T ss_pred CCCEEEEEcCC------CeEEEEEeCCCCccccceeee--ecC--CceEEEEECCCCCcEEEEEcCC-----CeEEEEEe
Confidence 34455556543 26778887665101 22221 111 1112223232345 66666644 36899999
Q ss_pred -CCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 317 -DAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 317 -~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
.+. .-..+... +....-.+..... +.+++.|+.+ ..+..+|+.
T Consensus 87 ~~~~--~~~~~~~~--~~~~~v~~l~~~~-~~~l~s~~~d------~~i~iwd~~ 130 (342)
T 1yfq_A 87 IGSP--SFQALTNN--EANLGICRICKYG-DDKLIAASWD------GLIEVIDPR 130 (342)
T ss_dssp SSSS--SEEECBSC--CCCSCEEEEEEET-TTEEEEEETT------SEEEEECHH
T ss_pred ccCC--ceEecccc--CCCCceEEEEeCC-CCEEEEEcCC------CeEEEEccc
Confidence 877 55544431 0111111222233 3556666542 357888864
No 226
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=84.99 E-value=27 Score=33.14 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=32.2
Q ss_pred EEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE--cCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 242 RVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV--NGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 242 ~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
.+++.|+.+ ..+.++|+.+.... ..+. . ......+..+ +++.+++.|+.++ .+.+||+.+.
T Consensus 157 ~~~~~~~~~------~~v~~~d~~~~~~~-~~~~--~---~~~~v~~~~~~~~~~~ll~~~~~dg-----~i~i~d~~~~ 219 (408)
T 4a11_B 157 CLVAVGTRG------PKVQLCDLKSGSCS-HILQ--G---HRQEILAVSWSPRYDYILATASADS-----RVKLWDVRRA 219 (408)
T ss_dssp CEEEEEESS------SSEEEEESSSSCCC-EEEC--C---CCSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTCS
T ss_pred cEEEEEcCC------CeEEEEeCCCccee-eeec--C---CCCcEEEEEECCCCCcEEEEEcCCC-----cEEEEECCCC
Confidence 366666543 26889998765211 2221 1 1111222233 2334777777543 5888998765
No 227
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=84.64 E-value=0.35 Score=50.25 Aligned_cols=33 Identities=30% Similarity=0.766 Sum_probs=30.4
Q ss_pred ccchhhHHHHHhhccC-ChhhhhhHHHhhHHHHHh
Q 042793 136 FQLSDEVISLKILSWL-SPRDIASVGSVCRRFYEL 169 (545)
Q Consensus 136 ~~lp~~~~~~~~~~~l-~~~~~~~~~~vcr~~~~l 169 (545)
..||+|++ .+|++++ +..+..+++.|||+|+.+
T Consensus 14 ~~LPdeil-~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVI-EQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTH-HHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHH-HHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 47999999 5899999 789999999999999998
No 228
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=84.39 E-value=20 Score=33.33 Aligned_cols=155 Identities=12% Similarity=0.138 Sum_probs=70.4
Q ss_pred CCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcC----CEEEEEcCCCCCCCccCcEEEEe
Q 042793 293 GSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDG----TKLIVSGGCADSGVLLSDTFLLD 368 (545)
Q Consensus 293 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~~d 368 (545)
++++++.|+.... -..+.+||+.+. ........ .... .-.++.+.. +.+++.|+.+ ..+.+||
T Consensus 30 ~~~l~~~~s~~~~--d~~v~iw~~~~~--~~~~~~~~--~~~~-~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd 96 (357)
T 3i2n_A 30 SAKFVTMGNFARG--TGVIQLYEIQHG--DLKLLREI--EKAK-PIKCGTFGATSLQQRYLATGDFG------GNLHIWN 96 (357)
T ss_dssp SSEEEEEEC--CC--CEEEEEEEECSS--SEEEEEEE--EESS-CEEEEECTTCCTTTCCEEEEETT------SCEEEEC
T ss_pred CceEEEecCccCC--CcEEEEEeCCCC--cccceeee--cccC-cEEEEEEcCCCCCCceEEEecCC------CeEEEEe
Confidence 3466666664211 146888998887 54433211 0001 111222322 2566666542 3488888
Q ss_pred cCCCCCceEEecCCCCCCCCCCcEEEEE------CCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCC
Q 042793 369 LSMEKPVWREIPVTWTPPSRLGHTLSVY------GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPG 442 (545)
Q Consensus 369 ~~~~~~~W~~~~~~~~p~~r~~~~~~~~------~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~ 442 (545)
+.........+.. .... -.++... .++.+++.|+. ...+..||+.........+...
T Consensus 97 ~~~~~~~~~~~~~--~~~~--v~~~~~~~~~~~s~~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~~---- 159 (357)
T 3i2n_A 97 LEAPEMPVYSVKG--HKEI--INAIDGIGGLGIGEGAPEIVTGSR---------DGTVKVWDPRQKDDPVANMEPV---- 159 (357)
T ss_dssp TTSCSSCSEEECC--CSSC--EEEEEEESGGGCC-CCCEEEEEET---------TSCEEEECTTSCSSCSEEECCC----
T ss_pred CCCCCccEEEEEe--cccc--eEEEeeccccccCCCccEEEEEeC---------CCeEEEEeCCCCCCcceecccc----
Confidence 7644312223321 1111 1112111 22356666664 3568888887322234444322
Q ss_pred CCCCCCCCCCCCcceEEEE-----ecCCEEEEEcCcCCCCCCCCceEEEcCCC
Q 042793 443 AGNPGGIAPPPRLDHVAVS-----LPGGRILIFGGSVAGLHSATQLYLLDPTE 490 (545)
Q Consensus 443 ~~~~~g~~p~~r~~~~~~~-----~~~~~l~v~GG~~~~~~~~~~v~~~d~~~ 490 (545)
.+ ...+ ...++. ..++.+++.|+.+ ..+.+||+.+
T Consensus 160 ----~~--~~~~-~v~~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~ 199 (357)
T 3i2n_A 160 ----QG--ENKR-DCWTVAFGNAYNQEERVVCAGYDN------GDIKLFDLRN 199 (357)
T ss_dssp ----TT--SCCC-CEEEEEEECCCC-CCCEEEEEETT------SEEEEEETTT
T ss_pred ----CC--CCCC-ceEEEEEEeccCCCCCEEEEEccC------CeEEEEECcc
Confidence 00 0011 111222 1367777777743 5789999964
No 229
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=84.13 E-value=33 Score=33.50 Aligned_cols=101 Identities=12% Similarity=0.033 Sum_probs=51.0
Q ss_pred EEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 347 KLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 347 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.+++.|+.+ ..+.+||+... +-...-. .....-.+++...++..++.|+. ...+..||+.
T Consensus 281 ~~l~~~~~d------~~i~vwd~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~l~sg~~---------dg~i~vwd~~ 340 (464)
T 3v7d_B 281 NIVVSGSYD------NTLIVWDVAQM--KCLYILS---GHTDRIYSTIYDHERKRCISASM---------DTTIRIWDLE 340 (464)
T ss_dssp TEEEEEETT------SCEEEEETTTT--EEEEEEC---CCSSCEEEEEEETTTTEEEEEET---------TSCEEEEETT
T ss_pred CEEEEEeCC------CeEEEEECCCC--cEEEEec---CCCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEECC
Confidence 455555542 35889996533 2211111 11111223334444456666664 3668888987
Q ss_pred CCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCC
Q 042793 427 EEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTE 490 (545)
Q Consensus 427 ~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~ 490 (545)
+.+ .+... ......-.++.. ++..++.|+.+ ..+.+||+.+
T Consensus 341 --~~~--~~~~~------------~~h~~~v~~~~~-~~~~l~s~s~d------g~v~vwd~~~ 381 (464)
T 3v7d_B 341 --NGE--LMYTL------------QGHTALVGLLRL-SDKFLVSAAAD------GSIRGWDAND 381 (464)
T ss_dssp --TTE--EEEEE------------CCCSSCEEEEEE-CSSEEEEEETT------SEEEEEETTT
T ss_pred --CCc--EEEEE------------eCCCCcEEEEEE-cCCEEEEEeCC------CcEEEEECCC
Confidence 433 22222 111122234444 56677777754 5688999964
No 230
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=83.99 E-value=25 Score=32.03 Aligned_cols=26 Identities=12% Similarity=0.354 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCcccCcEEEEecCCCCCceEecc
Q 042793 295 HLVVFGGCGRQGLLNDVFVLDLDAKPPTWREIS 327 (545)
Q Consensus 295 ~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~ 327 (545)
.+++.|+.+ ..+.++|+.+. .|..+.
T Consensus 68 ~~l~s~s~D-----~~v~iWd~~~~--~~~~~~ 93 (297)
T 2pm7_B 68 TILASCSYD-----GKVMIWKEENG--RWSQIA 93 (297)
T ss_dssp SEEEEEETT-----TEEEEEEBSSS--CBCCCE
T ss_pred CEEEEEcCC-----CEEEEEEcCCC--ceEEEE
Confidence 566677654 35788898877 665443
No 231
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=83.98 E-value=32 Score=35.67 Aligned_cols=196 Identities=13% Similarity=0.043 Sum_probs=94.6
Q ss_pred cCceEEEeCCC------CCCceEEec-cCCCCCCccceeEEE-EcCCEEEEEcCCCCCc--ccCcEEEEecC-CCCCceE
Q 042793 256 MNDTFVLDLNS------SNPEWQHVH-VSSPPPGRWGHTLSC-VNGSHLVVFGGCGRQG--LLNDVFVLDLD-AKPPTWR 324 (545)
Q Consensus 256 ~~~~~~~d~~t------~~~~W~~~~-~~~~~~~r~~~~~~~-~~~~~iyv~GG~~~~~--~~~~~~~yd~~-t~~~~W~ 324 (545)
..+++++|+.+ . ..+.+. .. .......+. -++++|++........ ...+++++|+. +. ++.
T Consensus 160 ~~~i~~~~~~~~~~~~~~--~~~~l~~~~----~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g--~~~ 231 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRS--AVRELSDDA----HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG--RFA 231 (662)
T ss_dssp EEEEEEEETTSTTTTCGG--GSEESSCSC----SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS--CEE
T ss_pred eeEEEEEECCCCccccCC--ceeEEEecC----CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC--ccc
Confidence 35799999987 5 555442 11 111122222 2454555444222111 13579999998 44 332
Q ss_pred ---eccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCC--CCCC---CcEEEEE
Q 042793 325 ---EISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTP--PSRL---GHTLSVY 396 (545)
Q Consensus 325 ---~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p--~~r~---~~~~~~~ 396 (545)
.+... . ...........++++|+.+..+ + ...++.+|+. +.++..+...... .+.. ..+.+..
T Consensus 232 ~~~~l~~~--~-~~~~~~~~~spdg~l~~~~~~~--~--~~~l~~~~~~--~~~~~~l~~~~~~~~~p~w~~~~~~~~~~ 302 (662)
T 3azo_A 232 DTRTLLGG--P-EEAIAQAEWAPDGSLIVATDRT--G--WWNLHRVDPA--TGAATQLCRREEEFAGPLWTPGMRWFAPL 302 (662)
T ss_dssp EEEEEEEE--T-TBCEEEEEECTTSCEEEEECTT--S--SCEEEEECTT--TCCEEESSCCSSBSSCCCCSTTCCSEEEC
T ss_pred ccEEeCCC--C-CceEcceEECCCCeEEEEECCC--C--CeEEEEEECC--CCceeecccccccccCccccccCceEeEe
Confidence 33221 0 1111122222234577766542 1 2368888854 4477776532110 0100 1233344
Q ss_pred CCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEE-EecCCEEEEEcCcCC
Q 042793 397 GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAV-SLPGGRILIFGGSVA 475 (545)
Q Consensus 397 ~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~-~~~~~~l~v~GG~~~ 475 (545)
.++++++.+.. + ...+|.+|+. +.+.+.+... .. ....+ ...++.+++..+..
T Consensus 303 ~~~~~~~~~~~---~-----~~~l~~~d~~--~~~~~~l~~~-------------~~--~~~~~~s~~~~~~~~~~~~~- 356 (662)
T 3azo_A 303 ANGLIAVVHGK---G-----AAVLGILDPE--SGELVDAAGP-------------WT--EWAATLTVSGTRAVGVAASP- 356 (662)
T ss_dssp TTSCEEEEEBS---S-----SCEEEEEETT--TTEEEECCSS-------------CC--EEEEEEEEETTEEEEEEEET-
T ss_pred CCCEEEEEEEc---C-----ccEEEEEECC--CCcEEEecCC-------------CC--eEEEEEecCCCEEEEEEcCC-
Confidence 44477766553 2 4789999987 5566555321 11 11222 33356666554432
Q ss_pred CCCCCCceEEEcCCCCCCceEEe
Q 042793 476 GLHSATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 476 ~~~~~~~v~~~d~~~~~~~W~~~ 498 (545)
.....+|.+|++ +.+.+.+
T Consensus 357 --~~~~~i~~~d~~--~g~~~~l 375 (662)
T 3azo_A 357 --RTAYEVVELDTV--TGRARTI 375 (662)
T ss_dssp --TEEEEEEEEETT--TCCEEEE
T ss_pred --CCCCEEEEEECC--CCceEEe
Confidence 123568888875 3445555
No 232
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=83.46 E-value=0.4 Score=41.19 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=24.9
Q ss_pred CCcceeEEEEEEEeecCCCC----EEEEEEEeeeeeecc
Q 042793 57 DGSPLMNRLRLSPIYGDDET----ITHVIGIQFFTEANV 91 (545)
Q Consensus 57 dG~~~w~~~~~~pi~d~~g~----~~~~i~~~~Dite~~ 91 (545)
+|. ++.+++.|+.+++|. +.+++.+++|||+++
T Consensus 153 ~g~--~~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 153 NGQ--NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp TTE--EEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTC
T ss_pred CCe--EEEEEEEEEEecCCCCcceEEeEEEEEeccchhc
Confidence 775 456778999876655 778888999999876
No 233
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=83.45 E-value=32 Score=32.89 Aligned_cols=153 Identities=10% Similarity=0.121 Sum_probs=75.9
Q ss_pred eeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEecc--CCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEE
Q 042793 235 SACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHV--SSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVF 312 (545)
Q Consensus 235 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~--~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 312 (545)
+++.+.+++|+|=|. .+|+++.......-..+.. ..+|. ....+.....++++|+|-| +.+|
T Consensus 185 Av~~~~g~~~fFkg~--------~~Wr~~~~~~~~~p~~I~~~wpgLP~-~iDAa~~~~~~g~~~fFkg-------~~yW 248 (365)
T 3ba0_A 185 AVTTVGNKIFFFKDR--------FFWLKVSERPKTSVNLISSLWPTLPS-GIEAAYEIEARNQVFLFKD-------DKYW 248 (365)
T ss_dssp CEEEETTEEEEEETT--------EEEECCSSCCCCCEEEHHHHCSSCCS-SCCEEEEEGGGTEEEEEET-------TEEE
T ss_pred eEEEcCCeEEEEeCC--------EEEEEcCCCccCCccchhhhccCCCC-CccEEEEecCCCEEEEEeC-------CEEE
Confidence 445678999999773 5677664432111111111 13442 2322222212458999976 3567
Q ss_pred EEecCCCCCce-EeccCCCCCC-CCccceEEEEc-CCEEEEEcCCCCCCCccCcEEEEecCCCCCceEE-----ecC--C
Q 042793 313 VLDLDAKPPTW-REISGLAPPL-PRSWHSSCTLD-GTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWRE-----IPV--T 382 (545)
Q Consensus 313 ~yd~~t~~~~W-~~~~~~~~~~-~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~-----~~~--~ 382 (545)
+|+.......+ ..+.....|. +..-.++.... ++++|+|-| +..|+||... .+-.. +.. .
T Consensus 249 r~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG--------~~yw~yd~~~--~~v~~gyPk~I~~~f~ 318 (365)
T 3ba0_A 249 LISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD--------NQYWRYDERR--QMMDPGYPKLITKNFQ 318 (365)
T ss_dssp ECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTT--TEECSSCCCCHHHHST
T ss_pred EEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC--------CEEEEEeCCc--ceecCCCCcchhhcCC
Confidence 77654321122 1333321122 11233444443 468999976 3478998432 11110 100 1
Q ss_pred CCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 383 WTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 383 ~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
+.| ..-.++....++++|+|=| +..|+||..
T Consensus 319 g~p--~~iDaA~~~~~g~~YfFkg-----------~~ywr~d~~ 349 (365)
T 3ba0_A 319 GIG--PKIDAVFYSKNKYYYFFQG-----------SNQFEYDFL 349 (365)
T ss_dssp TCC--SSCSEEEEETTTEEEEEET-----------TEEEEEETT
T ss_pred CCC--CccceeeEecCCcEEEEeC-----------CEEEEEECC
Confidence 122 2223444453448999866 678999987
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=83.05 E-value=16 Score=33.63 Aligned_cols=133 Identities=11% Similarity=0.159 Sum_probs=65.7
Q ss_pred ceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCcc
Q 042793 258 DTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSW 337 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~ 337 (545)
.+++|| .+....|+. ..+. ....+.+...++.||+ |. .+ +++||+ +....|..-... ...
T Consensus 41 ~l~~~d-~~g~~~~~~----~~~~-~~~~~~~~~~~g~l~v-~t------~~-l~~~d~-~g~~~~~~~~~~----~~~- 100 (330)
T 3hxj_A 41 NLYAIN-TDGSVKWFF----KSGE-IIECRPSIGKDGTIYF-GS------DK-VYAINP-DGTEKWRFDTKK----AIV- 100 (330)
T ss_dssp TTEEEC-TTSCEEESS----CGGG-EEEECCEETTTTEECC-SS------CE-EEEECC-CGGGGGGSCC----------
T ss_pred EEEEEC-CCCcEEEEE----ecCC-CcccceEEecCCcEEE-ec------Cc-EEEECC-CCcEEEEEECCC----Ccc-
Confidence 688999 665334542 1111 1112333223556666 22 12 899997 443356532211 111
Q ss_pred ceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCcccc
Q 042793 338 HSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRS 417 (545)
Q Consensus 338 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~ 417 (545)
...+.. ++.+|+... -..++.||.. ....|..... .+ ...+.+...++.+|+. .. .
T Consensus 101 ~~~~~~-~~~l~v~t~-------~~~l~~~d~~-g~~~~~~~~~--~~---~~~~~~~~~~g~l~vg-t~---------~ 156 (330)
T 3hxj_A 101 SDFTIF-EDILYVTSM-------DGHLYAINTD-GTEKWRFKTK--KA---IYATPIVSEDGTIYVG-SN---------D 156 (330)
T ss_dssp CCEEEE-TTEEEEECT-------TSEEEEECTT-SCEEEEEECS--SC---CCSCCEECTTSCEEEE-CT---------T
T ss_pred cCceEE-CCEEEEEec-------CCEEEEEcCC-CCEEEEEcCC--Cc---eeeeeEEcCCCEEEEE-cC---------C
Confidence 112223 557887432 1358899966 5557765432 11 1122334434477763 21 2
Q ss_pred CcEEEEeCCCCCCceEEe
Q 042793 418 SDVFTMDLSEEEPCWRCV 435 (545)
Q Consensus 418 ~~i~~~d~~~~~~~W~~v 435 (545)
..++.||+. ....|...
T Consensus 157 ~~l~~~d~~-g~~~~~~~ 173 (330)
T 3hxj_A 157 NYLYAINPD-GTEKWRFK 173 (330)
T ss_dssp SEEEEECTT-SCEEEEEE
T ss_pred CEEEEECCC-CCEeEEEe
Confidence 678899987 34567654
No 235
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=82.63 E-value=26 Score=31.12 Aligned_cols=146 Identities=10% Similarity=0.025 Sum_probs=69.1
Q ss_pred cCCEEEE-EcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 292 NGSHLVV-FGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 292 ~~~~iyv-~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
.++++|+ .... .+.+.+||+.+. ....+.......+ ++.+.-.++.+|+... . +.+++||..
T Consensus 33 ~~g~l~v~~~~~-----~~~i~~~~~~~~--~~~~~~~~~~~~p---~~i~~~~~g~l~v~~~-~------~~i~~~d~~ 95 (270)
T 1rwi_B 33 SAGNVYVTSEGM-----YGRVVKLATGST--GTTVLPFNGLYQP---QGLAVDGAGTVYVTDF-N------NRVVTLAAG 95 (270)
T ss_dssp TTCCEEEEECSS-----SCEEEEECC-------EECCCCSCCSC---CCEEECTTCCEEEEET-T------TEEEEECTT
T ss_pred CCCCEEEEccCC-----CCcEEEecCCCc--ccceEeeCCcCCc---ceeEECCCCCEEEEcC-C------CEEEEEeCC
Confidence 3446888 4332 246888988776 4443322110112 2233323446888754 1 358889854
Q ss_pred CCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCC
Q 042793 371 MEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIA 450 (545)
Q Consensus 371 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~ 450 (545)
+.....+... ....-..++...++++|+.... ...+++++.. +......... ..
T Consensus 96 --~~~~~~~~~~---~~~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~--~~~~~~~~~~----------~~ 149 (270)
T 1rwi_B 96 --SNNQTVLPFD---GLNYPEGLAVDTQGAVYVADRG---------NNRVVKLAAG--SKTQTVLPFT----------GL 149 (270)
T ss_dssp --CSCCEECCCC---SCSSEEEEEECTTCCEEEEEGG---------GTEEEEECTT--CCSCEECCCC----------SC
T ss_pred --CceEeeeecC---CcCCCcceEECCCCCEEEEECC---------CCEEEEEECC--CceeEeeccc----------cC
Confidence 3333333211 1112234444434578887542 3678888765 4333322111 01
Q ss_pred CCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 451 PPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 451 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
..+ ...+...++++|+.... .+.+++||++
T Consensus 150 ~~p---~~i~~~~~g~l~v~~~~------~~~i~~~~~~ 179 (270)
T 1rwi_B 150 NDP---DGVAVDNSGNVYVTDTD------NNRVVKLEAE 179 (270)
T ss_dssp CSC---CCEEECTTCCEEEEEGG------GTEEEEECTT
T ss_pred CCc---eeEEEeCCCCEEEEECC------CCEEEEEecC
Confidence 111 11222235778887542 2568999986
No 236
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=82.60 E-value=28 Score=31.64 Aligned_cols=30 Identities=17% Similarity=0.353 Sum_probs=18.6
Q ss_pred cCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEec
Q 042793 463 PGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILN 499 (545)
Q Consensus 463 ~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~ 499 (545)
.++++++.||.+ ..+.+|+... ...|..+.
T Consensus 264 ~~g~~las~~~D------~~v~lw~~~~-~g~w~~~~ 293 (297)
T 2pm7_B 264 LSGNVLALSGGD------NKVTLWKENL-EGKWEPAG 293 (297)
T ss_dssp SSSCCEEEEETT------SCEEEEEECT-TSCEEEC-
T ss_pred CCCCEEEEEcCC------CcEEEEEECC-CCcEEecc
Confidence 367777877754 3456666542 46788774
No 237
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=82.40 E-value=31 Score=31.93 Aligned_cols=218 Identities=11% Similarity=0.047 Sum_probs=102.0
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCce-EEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEW-QHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W-~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
+.+++.|+.+. .+.++|+.+. +- ..+. ..+.. ..+++...+.+.++.|+.+ ..+.+||..+.
T Consensus 92 ~~~l~s~s~D~------~i~lWd~~~~--~~~~~~~--~~~~~--~~~~~~spdg~~l~~g~~d-----g~v~i~~~~~~ 154 (321)
T 3ow8_A 92 LPIAASSSLDA------HIRLWDLENG--KQIKSID--AGPVD--AWTLAFSPDSQYLATGTHV-----GKVNIFGVESG 154 (321)
T ss_dssp SSEEEEEETTS------EEEEEETTTT--EEEEEEE--CCTTC--CCCEEECTTSSEEEEECTT-----SEEEEEETTTC
T ss_pred CCEEEEEeCCC------cEEEEECCCC--CEEEEEe--CCCcc--EEEEEECCCCCEEEEEcCC-----CcEEEEEcCCC
Confidence 34555565432 6788888765 32 2222 11111 1223333334566677643 35788998877
Q ss_pred CCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCce-EEecCCCCCCCCCCcEEEEECC
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVW-REIPVTWTPPSRLGHTLSVYGG 398 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W-~~~~~~~~p~~r~~~~~~~~~~ 398 (545)
...+..... ...-.+.+...++++++.|+.+ ..+.+||+.+. +- ..+.. ...+ -.+++...+
T Consensus 155 ~~~~~~~~~-----~~~v~~~~~spdg~~lasg~~d------g~i~iwd~~~~--~~~~~~~~--h~~~--v~~l~~spd 217 (321)
T 3ow8_A 155 KKEYSLDTR-----GKFILSIAYSPDGKYLASGAID------GIINIFDIATG--KLLHTLEG--HAMP--IRSLTFSPD 217 (321)
T ss_dssp SEEEEEECS-----SSCEEEEEECTTSSEEEEEETT------SCEEEEETTTT--EEEEEECC--CSSC--CCEEEECTT
T ss_pred ceeEEecCC-----CceEEEEEECCCCCEEEEEcCC------CeEEEEECCCC--cEEEEEcc--cCCc--eeEEEEcCC
Confidence 222221111 1111122222344666666643 34888996533 22 22221 1111 123334444
Q ss_pred cEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEe-cCCEEEEEcCcCCCC
Q 042793 399 RKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSL-PGGRILIFGGSVAGL 477 (545)
Q Consensus 399 ~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~ 477 (545)
+.+++.|+.+ ..+..||+. +.+.... . ......-.++.. .+++.++.|+.+
T Consensus 218 ~~~l~s~s~d---------g~i~iwd~~--~~~~~~~--~------------~~h~~~v~~~~~sp~~~~l~s~s~D--- 269 (321)
T 3ow8_A 218 SQLLVTASDD---------GYIKIYDVQ--HANLAGT--L------------SGHASWVLNVAFCPDDTHFVSSSSD--- 269 (321)
T ss_dssp SCEEEEECTT---------SCEEEEETT--TCCEEEE--E------------CCCSSCEEEEEECTTSSEEEEEETT---
T ss_pred CCEEEEEcCC---------CeEEEEECC--CcceeEE--E------------cCCCCceEEEEECCCCCEEEEEeCC---
Confidence 4677777652 567888887 4333222 1 111111122332 366777777754
Q ss_pred CCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCCC
Q 042793 478 HSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQTG 529 (545)
Q Consensus 478 ~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~ 529 (545)
..+.+||+.+ .+.+........ .-.+.....++..++.||.++
T Consensus 270 ---~~v~iwd~~~----~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 270 ---KSVKVWDVGT----RTCVHTFFDHQD--QVWGVKYNGNGSKIVSVGDDQ 312 (321)
T ss_dssp ---SCEEEEETTT----TEEEEEECCCSS--CEEEEEECTTSSEEEEEETTC
T ss_pred ---CcEEEEeCCC----CEEEEEEcCCCC--cEEEEEECCCCCEEEEEeCCC
Confidence 4688899863 223322111111 111222233566777777664
No 238
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=81.80 E-value=21 Score=34.81 Aligned_cols=19 Identities=11% Similarity=0.272 Sum_probs=13.3
Q ss_pred EEEEcCCCCCcccCcEEEEecCCC
Q 042793 296 LVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 296 iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
+++.|+.+ ..+.++|+.+.
T Consensus 196 ~l~s~~~d-----g~i~vwd~~~~ 214 (430)
T 2xyi_A 196 YLLSASDD-----HTICLWDINAT 214 (430)
T ss_dssp EEEEECTT-----SCEEEEETTSC
T ss_pred eEEEEeCC-----CeEEEEeCCCC
Confidence 66777654 35888998873
No 239
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=81.36 E-value=32 Score=31.37 Aligned_cols=189 Identities=12% Similarity=0.091 Sum_probs=89.2
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceE-EeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQ-HVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
++++++.|+.+. .+.++|+.+. +-. .+. . ... .-.++....+..+++.|+.+ ..+.++|+.+
T Consensus 76 ~~~~l~s~~~d~------~i~vwd~~~~--~~~~~~~--~-~~~-~v~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~ 138 (312)
T 4ery_A 76 DSNLLVSASDDK------TLKIWDVSSG--KCLKTLK--G-HSN-YVFCCNFNPQSNLIVSGSFD-----ESVRIWDVKT 138 (312)
T ss_dssp TSSEEEEEETTS------EEEEEETTTC--CEEEEEE--C-CSS-CEEEEEECSSSSEEEEEETT-----SCEEEEETTT
T ss_pred CCCEEEEECCCC------EEEEEECCCC--cEEEEEc--C-CCC-CEEEEEEcCCCCEEEEEeCC-----CcEEEEECCC
Confidence 345666666532 6888998765 322 221 1 111 11122222233566667654 3588999987
Q ss_pred CCCceE-eccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceE-EecCCCCCCCCCCcEEEE
Q 042793 319 KPPTWR-EISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWR-EIPVTWTPPSRLGHTLSV 395 (545)
Q Consensus 319 ~~~~W~-~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~-~~~~~~~p~~r~~~~~~~ 395 (545)
. +-. .+... ...-..+.+ .++.+++.|+.+ ..+.+||+... +.. .+... .. .....++.
T Consensus 139 ~--~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~--~~~~~~~~~-~~--~~~~~~~~ 200 (312)
T 4ery_A 139 G--KCLKTLPAH-----SDPVSAVHFNRDGSLIVSSSYD------GLCRIWDTASG--QCLKTLIDD-DN--PPVSFVKF 200 (312)
T ss_dssp C--CEEEEECCC-----SSCEEEEEECTTSSEEEEEETT------SCEEEEETTTC--CEEEEECCS-SC--CCEEEEEE
T ss_pred C--EEEEEecCC-----CCcEEEEEEcCCCCEEEEEeCC------CcEEEEECCCC--ceeeEEecc-CC--CceEEEEE
Confidence 6 322 22111 111122222 234566666643 34888996533 222 22111 11 11122223
Q ss_pred ECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCC
Q 042793 396 YGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVA 475 (545)
Q Consensus 396 ~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~ 475 (545)
..++..++.|+. ...+..||.. +.+-...-.. ...............++.+++.|+.+
T Consensus 201 ~~~~~~l~~~~~---------d~~i~iwd~~--~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~sg~~d- 258 (312)
T 4ery_A 201 SPNGKYILAATL---------DNTLKLWDYS--KGKCLKTYTG----------HKNEKYCIFANFSVTGGKWIVSGSED- 258 (312)
T ss_dssp CTTSSEEEEEET---------TTEEEEEETT--TTEEEEEECS----------SCCSSSCCCEEEECSSSCEEEECCTT-
T ss_pred CCCCCEEEEEcC---------CCeEEEEECC--CCcEEEEEEe----------cCCceEEEEEEEEeCCCcEEEEECCC-
Confidence 334356666654 3668888987 4332221111 01111112223333467777887754
Q ss_pred CCCCCCceEEEcCCC
Q 042793 476 GLHSATQLYLLDPTE 490 (545)
Q Consensus 476 ~~~~~~~v~~~d~~~ 490 (545)
+.+.+||+.+
T Consensus 259 -----g~i~vwd~~~ 268 (312)
T 4ery_A 259 -----NLVYIWNLQT 268 (312)
T ss_dssp -----SCEEEEETTT
T ss_pred -----CEEEEEECCC
Confidence 5688999863
No 240
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=81.30 E-value=33 Score=31.54 Aligned_cols=139 Identities=8% Similarity=-0.002 Sum_probs=63.7
Q ss_pred CCE-EEEEcCCCCCCCccCceEEEeC-CCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecC
Q 042793 240 GNR-VVLFGGEGVNMQPMNDTFVLDL-NSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLD 317 (545)
Q Consensus 240 ~~~-lyv~GG~~~~~~~~~~~~~~d~-~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 317 (545)
++. +++.|+.+. .+.++|+ .+. ....+....... .-.+++...+ ..++.|+.+ ..+.++|+.
T Consensus 67 ~~~~~l~~~~~dg------~i~~wd~~~~~--~~~~~~~~~~~~--~v~~l~~~~~-~~l~s~~~d-----~~i~iwd~~ 130 (342)
T 1yfq_A 67 NTDLQIYVGTVQG------EILKVDLIGSP--SFQALTNNEANL--GICRICKYGD-DKLIAASWD-----GLIEVIDPR 130 (342)
T ss_dssp SSSEEEEEEETTS------CEEEECSSSSS--SEEECBSCCCCS--CEEEEEEETT-TEEEEEETT-----SEEEEECHH
T ss_pred CCCcEEEEEcCCC------eEEEEEeccCC--ceEeccccCCCC--ceEEEEeCCC-CEEEEEcCC-----CeEEEEccc
Confidence 456 666676432 7899998 776 555443100111 1122222233 466666644 357888876
Q ss_pred CCCCc-----eEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCC-CCCceEEecCCCCCCCCCCc
Q 042793 318 AKPPT-----WREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSM-EKPVWREIPVTWTPPSRLGH 391 (545)
Q Consensus 318 t~~~~-----W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~-~~~~W~~~~~~~~p~~r~~~ 391 (545)
+.... ...+.... .+ ....++.+..+. ++.|+.+ ..+.+||+.. .......... +....-.
T Consensus 131 ~~~~~~~~~~~~~~~~~~--~~-~~v~~~~~~~~~-l~~~~~d------~~i~i~d~~~~~~~~~~~~~~---~~~~~i~ 197 (342)
T 1yfq_A 131 NYGDGVIAVKNLNSNNTK--VK-NKIFTMDTNSSR-LIVGMNN------SQVQWFRLPLCEDDNGTIEES---GLKYQIR 197 (342)
T ss_dssp HHTTBCEEEEESCSSSSS--SC-CCEEEEEECSSE-EEEEEST------TEEEEEESSCCTTCCCEEEEC---SCSSCEE
T ss_pred ccccccccccCCeeeEEe--eC-CceEEEEecCCc-EEEEeCC------CeEEEEECCccccccceeeec---CCCCcee
Confidence 51000 12222221 11 112233444545 4445432 3588999764 3222333321 1111223
Q ss_pred EEEEEC-CcEEEEEccc
Q 042793 392 TLSVYG-GRKILMFGGL 407 (545)
Q Consensus 392 ~~~~~~-~~~lyi~GG~ 407 (545)
+++... ++.+++.|+.
T Consensus 198 ~i~~~~~~~~~l~~~~~ 214 (342)
T 1yfq_A 198 DVALLPKEQEGYACSSI 214 (342)
T ss_dssp EEEECSGGGCEEEEEET
T ss_pred EEEECCCCCCEEEEEec
Confidence 334444 4467777765
No 241
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=81.08 E-value=34 Score=31.54 Aligned_cols=123 Identities=7% Similarity=-0.016 Sum_probs=60.7
Q ss_pred CCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEe
Q 042793 345 GTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMD 424 (545)
Q Consensus 345 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d 424 (545)
++++|+.+... ..+++||+. +.+...+.. .....-.+++...++++|+........ ...+++||
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~--~~~~~~~~~---~~~~~~~~i~~~~dg~l~v~~~~~~~~-----~~~i~~~d 118 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPE--TKEIKRPFV---SHKANPAAIKIHKDGRLFVCYLGDFKS-----TGGIFAAT 118 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTT--TCCEEEEEE---CSSSSEEEEEECTTSCEEEEECTTSSS-----CCEEEEEC
T ss_pred CCCEEEEECCC------CEEEEEeCC--CCcEEEEee---CCCCCcceEEECCCCcEEEEeCCCCCC-----CceEEEEe
Confidence 44788876532 358899854 445555431 111222344444455788765432111 25799999
Q ss_pred CCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEe
Q 042793 425 LSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 425 ~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~ 498 (545)
+. +.....+... ......-.......++++|+.............+|.+|++ +.+...+
T Consensus 119 ~~--~~~~~~~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 177 (333)
T 2dg1_A 119 EN--GDNLQDIIED-----------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--FRTVTPI 177 (333)
T ss_dssp TT--SCSCEEEECS-----------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT--SCCEEEE
T ss_pred CC--CCEEEEEEcc-----------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC--CCEEEEe
Confidence 88 5444433211 0111111222333367788754321111124579999985 3344444
No 242
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=82.00 E-value=0.31 Score=45.87 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=24.8
Q ss_pred EEEEEEEeecCCCCEEEEEEEee-eeeecc
Q 042793 63 NRLRLSPIYGDDETITHVIGIQF-FTEANV 91 (545)
Q Consensus 63 ~~~~~~pi~d~~g~~~~~i~~~~-Dite~~ 91 (545)
+..++.||++ +|++++.+++.+ |+|++.
T Consensus 111 v~~~~~Pi~~-~g~vigvl~~~~~di~~~~ 139 (305)
T 2ykf_A 111 HSVEVSPVRF-GDQVVAVLTRHQPELAARR 139 (305)
Confidence 5788999998 679999999999 999874
No 243
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=80.91 E-value=33 Score=31.27 Aligned_cols=149 Identities=8% Similarity=-0.008 Sum_probs=72.2
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++.||+..-.. ..+++||+.+. ....+. .+. +. .+++...++++|+.. .+.+++||+++.
T Consensus 24 ~~~l~~~d~~~------~~i~~~d~~~~--~~~~~~---~~~-~~-~~i~~~~dG~l~v~~-------~~~l~~~d~~~g 83 (297)
T 3g4e_A 24 SNSLLFVDIPA------KKVCRWDSFTK--QVQRVT---MDA-PV-SSVALRQSGGYVATI-------GTKFCALNWKEQ 83 (297)
T ss_dssp TTEEEEEETTT------TEEEEEETTTC--CEEEEE---CSS-CE-EEEEEBTTSSEEEEE-------TTEEEEEETTTT
T ss_pred CCEEEEEECCC------CEEEEEECCCC--cEEEEe---CCC-ce-EEEEECCCCCEEEEE-------CCeEEEEECCCC
Confidence 46788876432 37999999876 444432 111 11 223333334566653 146899999988
Q ss_pred CCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCC-----CCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEE
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCAD-----SGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTL 393 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~-----~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~ 393 (545)
+++.+.......+........+ .++++|+..-... .......++.++.+ . +...+... .. ....+
T Consensus 84 --~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~--g-~~~~~~~~-~~---~pngi 154 (297)
T 3g4e_A 84 --SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD--H-HVKKYFDQ-VD---ISNGL 154 (297)
T ss_dssp --EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT--S-CEEEEEEE-ES---BEEEE
T ss_pred --cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC--C-CEEEEeec-cc---cccce
Confidence 7776543211112111122223 2346777421100 00122457777742 2 33332210 11 11234
Q ss_pred EEEC-CcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 394 SVYG-GRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 394 ~~~~-~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
+... ++.||+.... .+.|++|+..
T Consensus 155 ~~spdg~~lyv~~~~---------~~~i~~~~~d 179 (297)
T 3g4e_A 155 DWSLDHKIFYYIDSL---------SYSVDAFDYD 179 (297)
T ss_dssp EECTTSCEEEEEEGG---------GTEEEEEEEC
T ss_pred EEcCCCCEEEEecCC---------CCcEEEEecc
Confidence 3433 3368877543 3678888763
No 244
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=80.86 E-value=34 Score=31.33 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=51.8
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceE-EeccCCCCC--CccceeEEEE-cCCEEEEEcCC---CCCc---ccCc
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQ-HVHVSSPPP--GRWGHTLSCV-NGSHLVVFGGC---GRQG---LLND 310 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~~~--~r~~~~~~~~-~~~~iyv~GG~---~~~~---~~~~ 310 (545)
+.+|+.+..+ ..++++|+.+. +-. .+.... +. ...-+.++.. +++++|+.... .... ..+.
T Consensus 46 ~~l~v~~~~~------~~v~~~d~~~~--~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~ 116 (337)
T 1pby_B 46 RIAYATVNKS------ESLVKIDLVTG--ETLGRIDLST-PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116 (337)
T ss_dssp SEEEEEETTT------TEEEEEETTTC--CEEEEEECCB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred CEEEEEeCCC------CeEEEEECCCC--CeEeeEEcCC-cccccccccceEECCCCCEEEEEecccccccccccccCce
Confidence 4677776532 37999999876 432 222111 00 0011222222 45577776421 0011 1367
Q ss_pred EEEEecCCCCCceEe-ccCCCCCCCCccceEEE-EcCCEEEEEcCCCCCCCccCcEEEEecCC
Q 042793 311 VFVLDLDAKPPTWRE-ISGLAPPLPRSWHSSCT-LDGTKLIVSGGCADSGVLLSDTFLLDLSM 371 (545)
Q Consensus 311 ~~~yd~~t~~~~W~~-~~~~~~~~~r~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 371 (545)
+++||+.+. +... +... ..+ +..+. -+++.+|+.+ +.++++|+.+
T Consensus 117 i~v~d~~~~--~~~~~~~~~--~~~---~~~~~s~dg~~l~~~~---------~~i~~~d~~~ 163 (337)
T 1pby_B 117 VALYDAETL--SRRKAFEAP--RQI---TMLAWARDGSKLYGLG---------RDLHVMDPEA 163 (337)
T ss_dssp EEEEETTTT--EEEEEEECC--SSC---CCEEECTTSSCEEEES---------SSEEEEETTT
T ss_pred EEEEECCCC--cEEEEEeCC--CCc---ceeEECCCCCEEEEeC---------CeEEEEECCC
Confidence 999999887 4332 2211 111 12222 2455577762 3589999653
No 245
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=80.68 E-value=60 Score=34.07 Aligned_cols=150 Identities=11% Similarity=0.085 Sum_probs=76.9
Q ss_pred CceEEEeCCCCCCceE--EeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCC------CCCceEecc
Q 042793 257 NDTFVLDLNSSNPEWQ--HVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDA------KPPTWREIS 327 (545)
Q Consensus 257 ~~~~~~d~~t~~~~W~--~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t------~~~~W~~~~ 327 (545)
..++++++.+. +.. .+- .....+.+....... ++++|++..... ....++++++|..+ ....+..+.
T Consensus 208 ~~v~~~~l~t~--~~~~~~v~-~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~~l~~~d~~~~~~~~~~~~~~~~l~ 283 (710)
T 2xdw_A 208 QKLYYHVLGTD--QSEDILCA-EFPDEPKWMGGAELSDDGRYVLLSIREG-CDPVNRLWYCDLQQESNGITGILKWVKLI 283 (710)
T ss_dssp CEEEEEETTSC--GGGCEEEE-CCTTCTTCEEEEEECTTSCEEEEEEECS-SSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred CEEEEEECCCC--cccceEEe-ccCCCCeEEEEEEEcCCCCEEEEEEEcc-CCCccEEEEEECcccccccCCccceEEee
Confidence 46889998876 422 221 111112222333332 444555544322 11246899999876 322466665
Q ss_pred CCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCC-CceEEecCCCCCCCCCCcEEEEECCcEEEEEcc
Q 042793 328 GLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEK-PVWREIPVTWTPPSRLGHTLSVYGGRKILMFGG 406 (545)
Q Consensus 328 ~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~-~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG 406 (545)
.. .... ......+|+.+|+.+..+ .....++.+|+.... ..|+.+... .+ ...-..+...+++.+++...
T Consensus 284 ~~--~~~~--~~~~s~dg~~l~~~s~~~---~~~~~l~~~d~~~~~~~~~~~l~~~-~~-~~~~~~~~~~~~~~lv~~~~ 354 (710)
T 2xdw_A 284 DN--FEGE--YDYVTNEGTVFTFKTNRH---SPNYRLINIDFTDPEESKWKVLVPE-HE-KDVLEWVACVRSNFLVLCYL 354 (710)
T ss_dssp CS--SSSC--EEEEEEETTEEEEEECTT---CTTCEEEEEETTSCCGGGCEEEECC-CS-SCEEEEEEEETTTEEEEEEE
T ss_pred CC--CCcE--EEEEeccCCEEEEEECCC---CCCCEEEEEeCCCCCcccceeccCC-CC-CCeEEEEEEEcCCEEEEEEE
Confidence 42 1111 223344677888887542 223568999975432 158877531 11 11122334443447777654
Q ss_pred cCCCCCCccccCcEEEEeCC
Q 042793 407 LAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 407 ~~~~~~~~~~~~~i~~~d~~ 426 (545)
... ...++.+|+.
T Consensus 355 ~~g-------~~~l~~~~~~ 367 (710)
T 2xdw_A 355 HDV-------KNTLQLHDLA 367 (710)
T ss_dssp ETT-------EEEEEEEETT
T ss_pred ECC-------EEEEEEEECC
Confidence 322 3678999985
No 246
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=80.62 E-value=40 Score=32.53 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=44.4
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCC
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPS 387 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~ 387 (545)
+.|+++|..+. .-..+-.+ ......-.++.+ .++.+++.|+.+ ..+.++|+... +-..... ...
T Consensus 125 ~tV~lWd~~tg--~~~~~~~~--~~~~~~V~sv~fspdg~~lasgs~D------g~v~iWd~~~~--~~~~~~~--~h~- 189 (420)
T 4gga_A 125 NSVYLWSASSG--DILQLLQM--EQPGEYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQ--KRLRNMT--SHS- 189 (420)
T ss_dssp TEEEEEETTTC--CEEEEEEC--CSTTCCEEEEEECTTSSEEEEEETT------SCEEEEETTTT--EEEEEEC--CCS-
T ss_pred CEEEEEECCCC--CEEEEEEe--cCCCCcEEEEEECCCCCEEEEEECC------CeEEEEEcCCC--cEEEEEe--CCC-
Confidence 36888888887 54433222 111111122233 344667777653 34888996533 2211111 111
Q ss_pred CCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 388 RLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 388 r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
....+...++ .+++.|+. ...++.+|..
T Consensus 190 -~~v~~~s~~~-~~l~sgs~---------d~~i~~~d~~ 217 (420)
T 4gga_A 190 -ARVGSLSWNS-YILSSGSR---------SGHIHHHDVR 217 (420)
T ss_dssp -SCEEEEEEET-TEEEEEET---------TSEEEEEETT
T ss_pred -CceEEEeeCC-CEEEEEeC---------CCceeEeeec
Confidence 1122333444 56666664 3566777766
No 247
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=80.41 E-value=43 Score=32.27 Aligned_cols=92 Identities=10% Similarity=0.137 Sum_probs=46.3
Q ss_pred ceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCc
Q 042793 258 DTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRS 336 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~ 336 (545)
.|+++|..+. +...+- .+......-+++.+ .+++.++.|+.+ ..+.++|+.+. +- +..+.....+
T Consensus 126 tV~lWd~~tg--~~~~~~--~~~~~~~~V~sv~fspdg~~lasgs~D-----g~v~iWd~~~~--~~--~~~~~~h~~~- 191 (420)
T 4gga_A 126 SVYLWSASSG--DILQLL--QMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQ--KR--LRNMTSHSAR- 191 (420)
T ss_dssp EEEEEETTTC--CEEEEE--ECCSTTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTT--EE--EEEECCCSSC-
T ss_pred EEEEEECCCC--CEEEEE--EecCCCCcEEEEEECCCCCEEEEEECC-----CeEEEEEcCCC--cE--EEEEeCCCCc-
Confidence 6788888776 544332 11111111223333 334566777654 35889999887 32 2222112222
Q ss_pred cceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCC
Q 042793 337 WHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSM 371 (545)
Q Consensus 337 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 371 (545)
..++..++ .+.+.|+.+ ..+..+|...
T Consensus 192 -v~~~s~~~-~~l~sgs~d------~~i~~~d~~~ 218 (420)
T 4gga_A 192 -VGSLSWNS-YILSSGSRS------GHIHHHDVRV 218 (420)
T ss_dssp -EEEEEEET-TEEEEEETT------SEEEEEETTS
T ss_pred -eEEEeeCC-CEEEEEeCC------CceeEeeecc
Confidence 23344544 566666643 3467777543
No 248
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=79.79 E-value=42 Score=31.82 Aligned_cols=192 Identities=14% Similarity=0.084 Sum_probs=87.1
Q ss_pred EEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCcc-ceEEEE--cCCEEEEEcCCCCCCCccCcEEEEecCC
Q 042793 295 HLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSW-HSSCTL--DGTKLIVSGGCADSGVLLSDTFLLDLSM 371 (545)
Q Consensus 295 ~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~-~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 371 (545)
..++.|+.+ ..+.++|+.+. .-...-....+..... -..+.+ .+..+++.|+.+ ..+.++|+..
T Consensus 171 ~~l~s~s~D-----~~i~~wd~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D------~~v~~wd~~~ 237 (380)
T 3iz6_a 171 TRLITGSGD-----QTCVLWDVTTG--QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD------TTVRLWDLRI 237 (380)
T ss_dssp SCEEEECTT-----SCEEEECTTTC--CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT------SCEEEEETTT
T ss_pred CEEEEECCC-----CcEEEEEcCCC--cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC------CeEEEEECCC
Confidence 345555543 35888999887 3322211111111111 111222 134677777753 3478888753
Q ss_pred CCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCC
Q 042793 372 EKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAP 451 (545)
Q Consensus 372 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p 451 (545)
.......+.. ... .-.+++...++..++.|+.+ ..+..+|+. +.+-...-... .......
T Consensus 238 ~~~~~~~~~~--h~~--~v~~v~~~p~~~~l~s~s~D---------~~i~lwd~~--~~~~~~~~~~~-----~~~~~~~ 297 (380)
T 3iz6_a 238 TSRAVRTYHG--HEG--DINSVKFFPDGQRFGTGSDD---------GTCRLFDMR--TGHQLQVYNRE-----PDRNDNE 297 (380)
T ss_dssp TCCCCEEECC--CSS--CCCEEEECTTSSEEEEECSS---------SCEEEEETT--TTEEEEEECCC-----CSSSCCS
T ss_pred CCcceEEECC--cCC--CeEEEEEecCCCeEEEEcCC---------CeEEEEECC--CCcEEEEeccc-----ccccccc
Confidence 3222333321 111 11234444444677777653 567788887 43322221110 0000000
Q ss_pred CCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCC--CceeEEeCCeeEEEEcCCCC
Q 042793 452 PPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAW--GHSTCVVGGTRTIVLGGQTG 529 (545)
Q Consensus 452 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~--~~~~~~~~~~~l~i~GG~~~ 529 (545)
.+... +.....++++++.|+.+ ..+.+||+.+.. .-..+ +....... -.+.....++..++.||.++
T Consensus 298 ~~~v~-~~~~s~~g~~l~~g~~d------g~i~vwd~~~~~-~~~~~---~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~ 366 (380)
T 3iz6_a 298 LPIVT-SVAFSISGRLLFAGYSN------GDCYVWDTLLAE-MVLNL---GTLQNSHEGRISCLGLSSDGSALCTGSWDK 366 (380)
T ss_dssp SCSCS-EEEECSSSSEEEEECTT------SCEEEEETTTCC-EEEEE---CCSCSSCCCCCCEEEECSSSSEEEEECTTS
T ss_pred cCceE-EEEECCCCCEEEEEECC------CCEEEEECCCCc-eEEEE---ecccCCCCCceEEEEECCCCCEEEEeeCCC
Confidence 11111 22223367788887753 568999986321 11122 11111111 12233334677888888875
Q ss_pred c
Q 042793 530 E 530 (545)
Q Consensus 530 ~ 530 (545)
.
T Consensus 367 ~ 367 (380)
T 3iz6_a 367 N 367 (380)
T ss_dssp C
T ss_pred C
Confidence 3
No 249
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=79.67 E-value=39 Score=31.30 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=50.3
Q ss_pred EEEEEcCCCCCcccCcEEEEecCCCCCce-EeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCC
Q 042793 295 HLVVFGGCGRQGLLNDVFVLDLDAKPPTW-REISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSME 372 (545)
Q Consensus 295 ~iyv~GG~~~~~~~~~~~~yd~~t~~~~W-~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 372 (545)
.+++.|+.+ ..+.+||..+....- ..+..- ...-.++.+ .++..++.|+.+ ..+.++|+...
T Consensus 55 ~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~ 118 (368)
T 3mmy_A 55 NFLIAGSWA-----NDVRCWEVQDSGQTIPKAQQMH-----TGPVLDVCWSDDGSKVFTASCD------KTAKMWDLSSN 118 (368)
T ss_dssp EEEEEEETT-----SEEEEEEECTTSCEEEEEEEEC-----SSCEEEEEECTTSSEEEEEETT------SEEEEEETTTT
T ss_pred eEEEEECCC-----CcEEEEEcCCCCceeEEEeccc-----cCCEEEEEECcCCCEEEEEcCC------CcEEEEEcCCC
Confidence 677777654 358888888741121 111111 111112222 233555666542 35888996543
Q ss_pred CCceEEecCCCCCCCCCCcEEEE--ECCcEEEEEcccCCCCCCccccCcEEEEeCCC
Q 042793 373 KPVWREIPVTWTPPSRLGHTLSV--YGGRKILMFGGLAKSGPLRFRSSDVFTMDLSE 427 (545)
Q Consensus 373 ~~~W~~~~~~~~p~~r~~~~~~~--~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~ 427 (545)
....... .. ..-.++.. ..++.+++.|+. ...+..||+.+
T Consensus 119 --~~~~~~~--~~--~~v~~~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~ 160 (368)
T 3mmy_A 119 --QAIQIAQ--HD--APVKTIHWIKAPNYSCVMTGSW---------DKTLKFWDTRS 160 (368)
T ss_dssp --EEEEEEE--CS--SCEEEEEEEECSSCEEEEEEET---------TSEEEEECSSC
T ss_pred --Cceeecc--cc--CceEEEEEEeCCCCCEEEEccC---------CCcEEEEECCC
Confidence 4333321 11 11123333 344477777765 35688889873
No 250
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=79.34 E-value=65 Score=33.72 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=80.3
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCC------CCCccCcEEEEecCCCCCceEEecCC
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCAD------SGVLLSDTFLLDLSMEKPVWREIPVT 382 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~------~~~~~~~~~~~d~~~~~~~W~~~~~~ 382 (545)
..++++|+.++ +...... +..+....+-. +++.||+...... .......++.+++.+....=..+..
T Consensus 155 ~~i~v~dl~tg--~~~~~~~---~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~- 227 (693)
T 3iuj_A 155 REIHLMDVESK--QPLETPL---KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG- 227 (693)
T ss_dssp EEEEEEETTTC--SEEEEEE---EEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEES-
T ss_pred EEEEEEECCCC--CCCcccc---CCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEe-
Confidence 57999999998 6543321 11112222333 6666665432211 0023456888887544222223322
Q ss_pred CCCC--CCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEE
Q 042793 383 WTPP--SRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAV 460 (545)
Q Consensus 383 ~~p~--~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~ 460 (545)
.+. +....++..-.+++.+++....... .+++|.+|+.+...+|+.+... .......+
T Consensus 228 -~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~-----~~~i~~~d~~~~~~~~~~l~~~--------------~~~~~~~~ 287 (693)
T 3iuj_A 228 -AIPAQHHRYVGATVTEDDRFLLISAANSTS-----GNRLYVKDLSQENAPLLTVQGD--------------LDADVSLV 287 (693)
T ss_dssp -CSGGGCCSEEEEEECTTSCEEEEEEESSSS-----CCEEEEEETTSTTCCCEEEECS--------------SSSCEEEE
T ss_pred -cCCCCCeEEEEEEEcCCCCEEEEEEccCCC-----CcEEEEEECCCCCCceEEEeCC--------------CCceEEEE
Confidence 111 2222233333333433332221111 3689999987433378877532 11112223
Q ss_pred EecCCEEEEEcCcCCCCCCCCceEEEcCCCC-CCceEEecc
Q 042793 461 SLPGGRILIFGGSVAGLHSATQLYLLDPTEE-KPTWRILNV 500 (545)
Q Consensus 461 ~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~-~~~W~~~~~ 500 (545)
...++++|+....+. ....++.+|+++. ...|+.+..
T Consensus 288 ~~~g~~l~~~t~~~~---~~~~l~~~d~~~~~~~~~~~l~~ 325 (693)
T 3iuj_A 288 DNKGSTLYLLTNRDA---PNRRLVTVDAANPGPAHWRDLIP 325 (693)
T ss_dssp EEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEEC
T ss_pred eccCCEEEEEECCCC---CCCEEEEEeCCCCCccccEEEec
Confidence 344788988865432 2467999998742 235887743
No 251
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=79.27 E-value=38 Score=31.02 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=15.3
Q ss_pred cCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 463 PGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 463 ~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
.++++++.|+.+ ..+.+||+.
T Consensus 225 ~~~~~l~s~s~D------g~i~iwd~~ 245 (340)
T 4aow_A 225 PDGSLCASGGKD------GQAMLWDLN 245 (340)
T ss_dssp TTSSEEEEEETT------CEEEEEETT
T ss_pred CCCCEEEEEeCC------CeEEEEEec
Confidence 367788888754 568888886
No 252
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=79.21 E-value=43 Score=31.56 Aligned_cols=112 Identities=12% Similarity=0.067 Sum_probs=50.9
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCC
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPS 387 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~ 387 (545)
..++++|+.+. .-..+... .....+....- +++.|++... .........++.+|+. +.....+.. ....
T Consensus 168 ~~l~~~d~~~g--~~~~l~~~---~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~--~~~~~~l~~--~~~~ 237 (388)
T 3pe7_A 168 CRLMRVDLKTG--ESTVILQE---NQWLGHPIYRPYDDSTVAFCHE-GPHDLVDARMWLINED--GTNMRKVKT--HAEG 237 (388)
T ss_dssp EEEEEEETTTC--CEEEEEEE---SSCEEEEEEETTEEEEEEEEEC-SCTTTSSCSEEEEETT--SCCCEESCC--CCTT
T ss_pred ceEEEEECCCC--ceEEeecC---CccccccEECCCCCCEEEEEEe-cCCCCCcceEEEEeCC--CCceEEeee--CCCC
Confidence 57899999987 55555432 11222222222 3434433321 1111224578999964 334555542 1111
Q ss_pred CCCcEEEEE-CCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeec
Q 042793 388 RLGHTLSVY-GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTG 437 (545)
Q Consensus 388 r~~~~~~~~-~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~ 437 (545)
......... +++.|+......+ .. ...++.+|+. +.+-+.+..
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~-~~----~~~l~~~d~~--~g~~~~l~~ 281 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKG-SP----DRFIYSADPE--TLENRQLTS 281 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETT-CC----CEEEEEECTT--TCCEEEEEE
T ss_pred cccccceECCCCCEEEEEecCCC-CC----cceEEEEecC--CCceEEEEc
Confidence 011112222 3334544332211 10 1249999998 555555543
No 253
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=78.79 E-value=45 Score=31.60 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=15.5
Q ss_pred cCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 463 PGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 463 ~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
.+++.++.|+.+ ..+.+||+.
T Consensus 259 p~~~~l~s~s~D------~~i~lwd~~ 279 (380)
T 3iz6_a 259 PDGQRFGTGSDD------GTCRLFDMR 279 (380)
T ss_dssp TTSSEEEEECSS------SCEEEEETT
T ss_pred cCCCeEEEEcCC------CeEEEEECC
Confidence 367788888854 458889986
No 254
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=78.74 E-value=0.12 Score=40.65 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=39.4
Q ss_pred eeeecccCCCCCCchhHHHhhhhhhhhccccc-----CCCcccCCC-CccccccCcccc-hhhHH--HHHhhccCC
Q 042793 86 FTEANVDLGPVPGYPVKEFLKSSERQRSFFSG-----NRTFPIGDR-NVCREVCGIFQL-SDEVI--SLKILSWLS 152 (545)
Q Consensus 86 Dite~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~~~g~~-~~~~~~~~~~~l-p~~~~--~~~~~~~l~ 152 (545)
|+|++|+. .+++.+.+++++.++++ +..+.+|.. .+|++.+.+.|+ ++|++ +..+..+++
T Consensus 1 ~~t~r~~~-------e~~L~~~~~~~~~l~e~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~ 69 (126)
T 3bwl_A 1 SNAERKRR-------EKRLEETSSRLEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF 69 (126)
T ss_dssp CHHHHHHH-------HHHHHHHHHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC
T ss_pred CchhHHHH-------HHHHHHHHHHHHHHHhhCCcEEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC
Confidence 56777743 34455577788887774 445566665 389999999999 77773 334444444
No 255
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=78.49 E-value=49 Score=31.82 Aligned_cols=143 Identities=10% Similarity=0.049 Sum_probs=67.3
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEE-eccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQH-VHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~-~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
+.+++.|+.+. .+.++|..+. +... +. . ... .-.+++...++++++.|+.++ .+.++|+.+.
T Consensus 120 ~~~l~s~s~Dg------~i~vwd~~~~--~~~~~l~--~-h~~-~V~~v~~~~~~~~l~sgs~D~-----~i~iwd~~~~ 182 (410)
T 1vyh_C 120 FSVMVSASEDA------TIKVWDYETG--DFERTLK--G-HTD-SVQDISFDHSGKLLASCSADM-----TIKLWDFQGF 182 (410)
T ss_dssp SSEEEEEESSS------CEEEEETTTC--CCCEEEC--C-CSS-CEEEEEECTTSSEEEEEETTS-----CCCEEETTSS
T ss_pred CCEEEEEeCCC------eEEEEECCCC--cEEEEEe--c-cCC-cEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCC
Confidence 45667776543 6888998876 3322 21 1 111 112222223345777777553 4677888765
Q ss_pred CCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECC
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGG 398 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 398 (545)
. .+..+... ...-.++.+ .++..++.|+.+ ..+.++|+.+.. .-..+.. . ...-.++....+
T Consensus 183 --~--~~~~~~~h--~~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~-~~~~~~~--h--~~~v~~~~~~~~ 245 (410)
T 1vyh_C 183 --E--CIRTMHGH--DHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGY-CVKTFTG--H--REWVRMVRPNQD 245 (410)
T ss_dssp --C--EEECCCCC--SSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCC-EEEEEEC--C--SSCEEEEEECTT
T ss_pred --c--eeEEEcCC--CCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCc-EEEEEeC--C--CccEEEEEECCC
Confidence 2 22222101 111122222 233566666643 358888875431 1122221 1 111112222334
Q ss_pred cEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 399 RKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 399 ~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
+.+++.|+.+ ..+..+|+.
T Consensus 246 g~~l~s~s~D---------~~v~vwd~~ 264 (410)
T 1vyh_C 246 GTLIASCSND---------QTVRVWVVA 264 (410)
T ss_dssp SSEEEEEETT---------SCEEEEETT
T ss_pred CCEEEEEcCC---------CeEEEEECC
Confidence 4667777653 566777876
No 256
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=77.83 E-value=47 Score=31.26 Aligned_cols=158 Identities=10% Similarity=0.064 Sum_probs=72.1
Q ss_pred CceEEEeCCCCCCceEEeccCCCCCCccceeEEEE--cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCC
Q 042793 257 NDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV--NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLP 334 (545)
Q Consensus 257 ~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~ 334 (545)
..++++|+.+. +...+... .......... ++++|++............++++|+.+. .+..+... .+
T Consensus 168 ~~l~~~d~~~g--~~~~~~~~----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~---~~ 236 (396)
T 3c5m_A 168 CRLIKVDIETG--ELEVIHQD----TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS--NVRKIKEH---AE 236 (396)
T ss_dssp EEEEEEETTTC--CEEEEEEE----SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC--CCEESSCC---CT
T ss_pred ceEEEEECCCC--cEEeeccC----CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC--ceeEeecc---CC
Confidence 36889998876 66554311 1111122222 2434555432111112257999999877 66666541 11
Q ss_pred CccceEEEE--cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEEC-CcEEEEEcccCCC-
Q 042793 335 RSWHSSCTL--DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYG-GRKILMFGGLAKS- 410 (545)
Q Consensus 335 r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~lyi~GG~~~~- 410 (545)
........+ +|+.|++.... . +.....++++|+.+ .+...+.. .+. +...... +++++++.+....
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~-~-~~~~~~l~~~d~~~--g~~~~l~~--~~~----~~~~~s~~dg~~l~~~~~~~p~ 306 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYF-K-GQTDRVIYKANPET--LENEEVMV--MPP----CSHLMSNFDGSLMVGDGCDAPV 306 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEE-T-TTCCEEEEEECTTT--CCEEEEEE--CCS----EEEEEECSSSSEEEEEECCC--
T ss_pred CccccceEECCCCCEEEEEecC-C-CCccceEEEEECCC--CCeEEeee--CCC----CCCCccCCCCceEEEecCCcce
Confidence 111111222 34445444221 1 11113489999653 35555442 221 1233333 3356655442110
Q ss_pred ---C---CCccccCcEEEEeCCCCCCceEEeec
Q 042793 411 ---G---PLRFRSSDVFTMDLSEEEPCWRCVTG 437 (545)
Q Consensus 411 ---~---~~~~~~~~i~~~d~~~~~~~W~~v~~ 437 (545)
. ........++.+|+. +.+...+..
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~--~~~~~~l~~ 337 (396)
T 3c5m_A 307 DVADADSYNIENDPFLYVLNTK--AKSAQKLCK 337 (396)
T ss_dssp --------CCCCCCEEEEEETT--TTBCCEEEE
T ss_pred eeccccccccCCCCcEEEEecc--cCceEEccC
Confidence 0 000013689999988 555555543
No 257
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=77.74 E-value=73 Score=33.39 Aligned_cols=109 Identities=13% Similarity=-0.004 Sum_probs=49.0
Q ss_pred cEEEEecCC-CCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCC
Q 042793 310 DVFVLDLDA-KPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSR 388 (545)
Q Consensus 310 ~~~~yd~~t-~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 388 (545)
.++++|+.+ . .-..+.... .........+.-+|+.|++.... . .....+++.+|+.+ .+...+.......-.
T Consensus 264 ~l~~~d~~~~~--~~~~~~~~~-~~~~~~~~~~~pDg~~l~~~~~~-~-~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~ 336 (741)
T 2ecf_A 264 KLGVISPAEQA--QTQWIDLGK-EQDIYLARVNWRDPQHLSFQRQS-R-DQKKLDLVEVTLAS--NQQRVLAHETSPTWV 336 (741)
T ss_dssp EEEEECSSTTC--CCEEECCCS-CSSEEEEEEEEEETTEEEEEEEE-T-TSSEEEEEEEETTT--CCEEEEEEEECSSCC
T ss_pred EEEEEECCCCC--ceEEecCCC-CcceEEEEEEeCCCCEEEEEEec-c-cCCeEEEEEEECCC--CceEEEEEcCCCCcC
Confidence 688889888 7 433332210 11111112222455555554321 1 12235688889653 355444321111000
Q ss_pred -CCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEe
Q 042793 389 -LGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCV 435 (545)
Q Consensus 389 -~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v 435 (545)
.....+...++++++.+... + ...+|.+|.. .. ...+
T Consensus 337 ~~~~~~~~spdg~~~~~~~~~--g-----~~~l~~~~~~--~~-~~~l 374 (741)
T 2ecf_A 337 PLHNSLRFLDDGSILWSSERT--G-----FQHLYRIDSK--GK-AAAL 374 (741)
T ss_dssp CCCSCCEECTTSCEEEEECTT--S-----SCEEEEECSS--SC-EEES
T ss_pred CcCCceEECCCCeEEEEecCC--C-----ccEEEEEcCC--CC-eeee
Confidence 01122333344666555432 1 3689999876 44 4444
No 258
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=77.35 E-value=42 Score=30.44 Aligned_cols=142 Identities=11% Similarity=0.136 Sum_probs=68.0
Q ss_pred ceEEEeCCCCCCceEEeccCCCC-CCccceeEEEEcC-CEEEEEcCCCCCcccCcEEEEecCCCCCceEec-cCCCCCCC
Q 042793 258 DTFVLDLNSSNPEWQHVHVSSPP-PGRWGHTLSCVNG-SHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREI-SGLAPPLP 334 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~~~~~-~~r~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~-~~~~~~~~ 334 (545)
.+++||+.+. ++..+...... ....-+.++.-.+ +++|+.... +.+++||++ . +...+ .......+
T Consensus 47 ~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~------~~l~~~d~~-g--~~~~~~~~~~~~~~ 115 (314)
T 1pjx_A 47 EILRIDLKTG--KKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLLVVQTD-G--TFEEIAKKDSEGRR 115 (314)
T ss_dssp EEEEECTTTC--CEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEEEEETT-S--CEEECCSBCTTSCB
T ss_pred EEEEEeCCCC--cEEEEEecccCCCCCCCceEEEecCCCcEEEEECC------CCEEEEeCC-C--CEEEEEeccCCCcc
Confidence 6999998777 77655320000 0111233333233 578887541 258999998 6 66655 32210111
Q ss_pred -CccceEEEEcCCEEEEEcCCC---------CCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEE----CCc-
Q 042793 335 -RSWHSSCTLDGTKLIVSGGCA---------DSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVY----GGR- 399 (545)
Q Consensus 335 -r~~~~~~~~~~~~iyv~GG~~---------~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~----~~~- 399 (545)
..-+..+.-.++.+|+..... ........+++++.+ .+...+... .. ....++.. .++
T Consensus 116 ~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~~~~~~-~~---~~~~i~~~~~~d~dg~ 188 (314)
T 1pjx_A 116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD---GQMIQVDTA-FQ---FPNGIAVRHMNDGRPY 188 (314)
T ss_dssp CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT---SCEEEEEEE-ES---SEEEEEEEECTTSCEE
T ss_pred ccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC---CCEEEeccC-CC---CcceEEEecccCCCCC
Confidence 112223332345788865321 011112458888843 244433210 11 11334444 443
Q ss_pred EEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 400 KILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 400 ~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.+|+.... ...+++||+.
T Consensus 189 ~l~v~~~~---------~~~i~~~~~~ 206 (314)
T 1pjx_A 189 QLIVAETP---------TKKLWSYDIK 206 (314)
T ss_dssp EEEEEETT---------TTEEEEEEEE
T ss_pred EEEEEECC---------CCeEEEEECC
Confidence 56766432 3678888864
No 259
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=77.30 E-value=0.38 Score=38.14 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=38.8
Q ss_pred hHHHhhhhhhhhccccc-----CCCcccCCCC-ccccccCcccc-hhhHHHHHhhccCChhh
Q 042793 101 VKEFLKSSERQRSFFSG-----NRTFPIGDRN-VCREVCGIFQL-SDEVISLKILSWLSPRD 155 (545)
Q Consensus 101 ~~~~~~~~~r~~~~~~~-----~~~~~~g~~~-~~~~~~~~~~l-p~~~~~~~~~~~l~~~~ 155 (545)
.+++.+.+++++.++++ +..+.+|... +|++.+.+.|+ ++|+++..+..++|+.+
T Consensus 8 e~~l~~~~~~~~~l~~~~~d~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~ 69 (130)
T 1d06_A 8 EDVVRARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPY 69 (130)
T ss_dssp HHHHHHHTSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTH
T ss_pred HHHHHHHHHHHHHHHhhCcCeEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchh
Confidence 34455567777777774 4456666653 89999999999 88888766666666654
No 260
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=77.27 E-value=53 Score=31.51 Aligned_cols=203 Identities=12% Similarity=0.132 Sum_probs=101.0
Q ss_pred eEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC-----CCceEeccCCCCCC
Q 042793 259 TFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK-----PPTWREISGLAPPL 333 (545)
Q Consensus 259 ~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~-----~~~W~~~~~~~~~~ 333 (545)
-|.+-..-....|+....+..|....-|+.+.++++ =|++|=..++-....+-++-.... ...=+.+++. -.
T Consensus 260 ~W~~~T~F~~spW~~t~L~~i~~vTe~HSFa~i~~~-~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~se--y~ 336 (670)
T 3ju4_A 260 NWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNN-GFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSE--YE 336 (670)
T ss_dssp EEEEEECSTTSCCEEEECCSCTTCSEEEEEEECSSS-CEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGG--GC
T ss_pred eeeeeeeeccCCceecccccccceeeeeeeeEecCC-ceEEEeccCCCCcceeeEEEecccccCCcceeeeechhh--hc
Confidence 455544333348987666667777778999888664 567774444433344433222110 0122334432 12
Q ss_pred CCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCC
Q 042793 334 PRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPL 413 (545)
Q Consensus 334 ~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~ 413 (545)
+-+.-.++.+.++.+|+.---..+..+-+.+.+-+ .....|+.+..+ -..--...-.+.+++ .|||||-....+..
T Consensus 337 ~~AsEPCvkyYdgvLyLtTRgt~~~~~GS~L~rs~--d~Gq~w~slrfp-~nvHhtnlPFakvgD-~l~mFgsERA~nEW 412 (670)
T 3ju4_A 337 PDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSR--DIGQTWESLRFP-HNVHHTTLPFAKVGD-DLIMFGSERAENEW 412 (670)
T ss_dssp TTEEEEEEEEETTEEEEEEEESCTTSCCCEEEEES--STTSSCEEEECT-TCCCSSCCCEEEETT-EEEEEEECSSTTCS
T ss_pred cccccchhhhhCCEEEEEecCcCCCCCcceeeeec--ccCCchhheecc-ccccccCCCcceeCC-EEEEEecccccccc
Confidence 22222233444669999732112222333455555 335589887631 111111223456777 99999854321111
Q ss_pred ---------ccccCc--EEEEeCCC---CCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEE-EEEcCcC
Q 042793 414 ---------RFRSSD--VFTMDLSE---EEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRI-LIFGGSV 474 (545)
Q Consensus 414 ---------~~~~~~--i~~~d~~~---~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l-~v~GG~~ 474 (545)
.-.... +.+.+... +..+|..+... .-.|..-..-.+-.++++.++.| |+|||.+
T Consensus 413 E~G~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdq------IYqG~ivNsavGVGSv~vKD~~lyyiFGgEd 482 (670)
T 3ju4_A 413 EAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQ------IYQGGIVNSGVGVGSVVVKDNYIYYMFGGED 482 (670)
T ss_dssp STTCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEEC------BBCCSSSCCCSEEEEEEEETTEEEEEEEEBC
T ss_pred ccCCCcccccccCCceEEEEeecccCCccceEEEEeecc------eeccccccccccceeEEEeCCEEEEEecCcc
Confidence 000111 22233321 25678887654 12233344445566777768877 5889965
No 261
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=76.91 E-value=50 Score=31.08 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=29.2
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCC
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSME 372 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 372 (545)
..+|++|+.+. .-..+... +..........-++..|++...- ..++.+|+.+.
T Consensus 60 ~~l~~~d~~~g--~~~~lt~~--~~~~~~~~~~spdg~~l~~~~~~-------~~l~~~d~~~g 112 (388)
T 3pe7_A 60 WNYYLLDLNTQ--VATQLTEG--RGDNTFGGFLSPDDDALFYVKDG-------RNLMRVDLATL 112 (388)
T ss_dssp CEEEEEETTTC--EEEECCCS--SCBCSSSCEECTTSSEEEEEETT-------TEEEEEETTTC
T ss_pred ceEEEEeCCCC--ceEEeeeC--CCCCccceEEcCCCCEEEEEeCC-------CeEEEEECCCC
Confidence 36899999988 76666543 21111112222345455554421 36888997643
No 262
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=76.86 E-value=55 Score=31.87 Aligned_cols=63 Identities=8% Similarity=0.130 Sum_probs=33.4
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
+++++.|+.+ ..+.++|+.+. +....-.... .... .+++..++ ++++.|+.+ ..+.+||+.+.
T Consensus 210 ~~~l~s~~~d------~~i~vwd~~~~--~~~~~~~~~h-~~~v-~~~~~sd~-~~l~s~~~d-----~~v~vwd~~~~ 272 (450)
T 2vdu_B 210 HQFIITSDRD------EHIKISHYPQC--FIVDKWLFGH-KHFV-SSICCGKD-YLLLSAGGD-----DKIFAWDWKTG 272 (450)
T ss_dssp CEEEEEEETT------SCEEEEEESCT--TCEEEECCCC-SSCE-EEEEECST-TEEEEEESS-----SEEEEEETTTC
T ss_pred CcEEEEEcCC------CcEEEEECCCC--ceeeeeecCC-CCce-EEEEECCC-CEEEEEeCC-----CeEEEEECCCC
Confidence 6677777754 26888898765 3222110011 1111 12222234 566666643 36888998876
No 263
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=76.43 E-value=45 Score=30.34 Aligned_cols=145 Identities=8% Similarity=0.020 Sum_probs=69.2
Q ss_pred CEEEEEcCCCCCcccCcEEEEecCCCCCceEe-ccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCC
Q 042793 294 SHLVVFGGCGRQGLLNDVFVLDLDAKPPTWRE-ISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSME 372 (545)
Q Consensus 294 ~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~-~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 372 (545)
+..++.|+.+ ..+.++|..+. .-.. +... ..+ -.++....++++++.|+.+ ..+.++|+.+.
T Consensus 25 ~~~l~s~~~d-----g~v~lWd~~~~--~~~~~~~~~--~~~--v~~~~~~~~~~~l~s~s~d------~~i~vwd~~~~ 87 (304)
T 2ynn_A 25 EPWVLTTLYS-----GRVELWNYETQ--VEVRSIQVT--ETP--VRAGKFIARKNWIIVGSDD------FRIRVFNYNTG 87 (304)
T ss_dssp SSEEEEEETT-----SEEEEEETTTT--EEEEEEECC--SSC--EEEEEEEGGGTEEEEEETT------SEEEEEETTTC
T ss_pred CCEEEEEcCC-----CcEEEEECCCC--ceeEEeecc--CCc--EEEEEEeCCCCEEEEECCC------CEEEEEECCCC
Confidence 3566666644 35788898876 3221 1111 111 1122233344566666642 35788886543
Q ss_pred CCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCC
Q 042793 373 KPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPP 452 (545)
Q Consensus 373 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~ 452 (545)
.. -..+.. . ...-.+++...++.+++.|+.+ ..+..+|+. +. +...... ..
T Consensus 88 ~~-~~~~~~--h--~~~v~~~~~~~~~~~l~sgs~D---------~~v~lWd~~--~~-~~~~~~~------------~~ 138 (304)
T 2ynn_A 88 EK-VVDFEA--H--PDYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWE--NN-WALEQTF------------EG 138 (304)
T ss_dssp CE-EEEEEC--C--SSCEEEEEECSSSSEEEEEETT---------SCEEEEEGG--GT-TEEEEEE------------CC
T ss_pred cE-EEEEeC--C--CCcEEEEEEcCCCCEEEEECCC---------CeEEEEECC--CC-cchhhhh------------cc
Confidence 21 122221 1 1112233344444666676653 567777876 22 3222222 01
Q ss_pred CCcceEEEEec--CCEEEEEcCcCCCCCCCCceEEEcCCC
Q 042793 453 PRLDHVAVSLP--GGRILIFGGSVAGLHSATQLYLLDPTE 490 (545)
Q Consensus 453 ~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~~v~~~d~~~ 490 (545)
....-.++... ++.+++.|+.+ ..+.+||+..
T Consensus 139 h~~~v~~v~~~p~~~~~l~sgs~D------~~v~iwd~~~ 172 (304)
T 2ynn_A 139 HEHFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQ 172 (304)
T ss_dssp CCSCEEEEEECTTCTTEEEEEETT------SEEEEEETTC
T ss_pred cCCcEEEEEECCCCCCEEEEEeCC------CeEEEEECCC
Confidence 11111233332 45677888754 5688888853
No 264
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=76.43 E-value=39 Score=29.54 Aligned_cols=155 Identities=11% Similarity=0.167 Sum_probs=76.5
Q ss_pred eeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCce-EEecc--CCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcE
Q 042793 235 SACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEW-QHVHV--SSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDV 311 (545)
Q Consensus 235 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W-~~~~~--~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 311 (545)
+++...+++|+|=|. .+|+++........ ..+.. ..+|. ....+.....++++|+|-| +..
T Consensus 35 Ai~~~~g~~~fFkg~--------~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~IDAA~~~~~~~k~yfFkG-------~~y 98 (218)
T 1gen_A 35 GIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG-------NEY 98 (218)
T ss_dssp EEEEETTEEEEEETT--------EEEEESSTTSCCEEEEEGGGTCTTSCS-CCSEEEEETTTTEEEEEET-------TEE
T ss_pred EEEeCCCcEEEEECC--------EEEEEeCCCCccCCCEEHHHhcCCCCC-CccEEEEECCCCEEEEEeC-------CEE
Confidence 455678999999873 57777654320011 11211 12332 2332222223468999977 467
Q ss_pred EEEecCCCCCce-EeccCCCCCC-CCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceE-----EecCCC
Q 042793 312 FVLDLDAKPPTW-REISGLAPPL-PRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWR-----EIPVTW 383 (545)
Q Consensus 312 ~~yd~~t~~~~W-~~~~~~~~~~-~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~-----~~~~~~ 383 (545)
|+||-.+...-+ +.|.....|. ...-.++... .++++|+|-|. ..|+||.... +-. .+....
T Consensus 99 W~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG~--------~ywr~d~~~~--~v~~gyPr~i~~~w 168 (218)
T 1gen_A 99 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD--------KFWRYNEVKK--KMDPGFPKLIADAW 168 (218)
T ss_dssp EEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT--------EEEEEETTTT--EECSSCCEEHHHHS
T ss_pred EEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEECC--------EEEEEECccc--cccCCCCcchhhcc
Confidence 888743210000 1232211121 1122344443 35699999773 4788985322 111 111111
Q ss_pred CCCCCCCcEEEEEC-CcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 384 TPPSRLGHTLSVYG-GRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 384 ~p~~r~~~~~~~~~-~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
...+..-.++.... ++.+|+|-| +..|+||..
T Consensus 169 ~g~p~~idaAf~~~~~g~~YfFkg-----------~~y~~~~~~ 201 (218)
T 1gen_A 169 NAIPDNLDAVVDLQGGGHSYFFKG-----------AYYLKLENQ 201 (218)
T ss_dssp SSCCSSCSEEEECTTTCEEEEEET-----------TEEEEEETT
T ss_pred CCCCCCCCEEEEEcCCCcEEEEEC-----------CEEEEEECC
Confidence 11122233444444 359999966 678888875
No 265
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=76.00 E-value=84 Score=33.22 Aligned_cols=105 Identities=6% Similarity=-0.056 Sum_probs=53.9
Q ss_pred CCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEe
Q 042793 345 GTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMD 424 (545)
Q Consensus 345 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d 424 (545)
++.+++.+|.. +-+++||.. +.+++.+.....+......+++.-.++.|++- . ...+.+||
T Consensus 482 ~g~lWi~~~t~------~Gl~~~d~~--~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t----------~~Gl~~~~ 542 (758)
T 3ott_A 482 EGNVWVLLYNN------KGIDKINPR--TREVTKLFADELTGEKSPNYLLCDEDGLLWVG-F----------HGGVMRIN 542 (758)
T ss_dssp TSCEEEEETTC------SSEEEEETT--TTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-E----------TTEEEEEC
T ss_pred CCCEEEEccCC------CCcEEEeCC--CCceEEecCCCcCCCcccceEEECCCCCEEEE-e----------cCceEEEe
Confidence 45799866642 238899954 55777764322221111223333334578853 2 14588899
Q ss_pred CCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCC
Q 042793 425 LSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTE 490 (545)
Q Consensus 425 ~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~ 490 (545)
+. +.+++..... .+|... -.++...++.|++-.. +-+.+||+++
T Consensus 543 ~~--~~~~~~~~~~----------gl~~~~--i~~i~~~~g~lWi~t~--------~Gl~~~~~~~ 586 (758)
T 3ott_A 543 PK--DESQQSISFG----------SFSNNE--ILSMTCVKNSIWVSTT--------NGLWIIDRKT 586 (758)
T ss_dssp C----CCCCBCCCC----------C---CC--EEEEEEETTEEEEEES--------SCEEEEETTT
T ss_pred cC--CCceEEeccc----------CCCccc--eEEEEECCCCEEEECC--------CCeEEEcCCC
Confidence 87 5555444211 123221 1233334778887542 4589999973
No 266
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=75.56 E-value=39 Score=29.21 Aligned_cols=150 Identities=13% Similarity=0.126 Sum_probs=73.0
Q ss_pred CCEEEEEcCCCCCcccCcEEEEecCCCCCceE--eccCCCCCCCCccceEEEEc-CCEEEEEcCCCCCCCccCcEEEEec
Q 042793 293 GSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWR--EISGLAPPLPRSWHSSCTLD-GTKLIVSGGCADSGVLLSDTFLLDL 369 (545)
Q Consensus 293 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~--~~~~~~~~~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~ 369 (545)
.+.+|+|=| +.+|.++.... .+. .|...-+-.|..-.++.... ++++|+|-|. ..|+|+
T Consensus 33 ~g~~y~Fkg-------~~~wr~~~~~~--~~~p~~I~~~wp~Lp~~iDAa~~~~~~~~iyfFkG~--------~~w~~~- 94 (207)
T 1pex_A 33 RGETMIFKD-------RFFWRLHPQQV--DAELFLTKSFWPELPNRIDAAYEHPSHDLIFIFRGR--------KFWALN- 94 (207)
T ss_dssp TTEEEEEET-------TEEEEECSSSS--CCEEEEHHHHCTTSCSSCCEEEEETTTTEEEEEETT--------EEEEES-
T ss_pred CCcEEEEEC-------CEEEEEeCCCc--CCCceehhHhccCCCCCccEEEEeccCCcEEEEccC--------EEEEEe-
Confidence 457999866 24666665443 222 22111001122223343332 4689999773 367776
Q ss_pred CCCCCc---eEEecCCCCCCC--CCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCC
Q 042793 370 SMEKPV---WREIPVTWTPPS--RLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAG 444 (545)
Q Consensus 370 ~~~~~~---W~~~~~~~~p~~--r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~ 444 (545)
..+.. =..+..-++|.. ...++....+++++|+|-| +..|+||.. +.+ +.. +-|...
T Consensus 95 -~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-----------~~ywr~d~~--~~~---~d~-gyPr~i 156 (207)
T 1pex_A 95 -GYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-----------NQVWRYDDT--NHI---MDK-DYPRLI 156 (207)
T ss_dssp -TTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-----------TEEEEEETT--TTE---ECS-SCCCBH
T ss_pred -CCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-----------CEEEEEeCc--Ccc---ccC-CCCccH
Confidence 22111 123332234431 2333332223459999976 678999976 321 211 101000
Q ss_pred C-CCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 445 N-PGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 445 ~-~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
. .-...| ..-.+++.. ++++|+|-| +..|.||..
T Consensus 157 ~~~~~Gip--~~iDaAf~~-~g~~YfFkg--------~~y~rf~~~ 191 (207)
T 1pex_A 157 EEDFPGIG--DKVDAVYEK-NGYIYFFNG--------PIQFEYSIW 191 (207)
T ss_dssp HHHSTTSC--SCCSEEEEE-TTEEEEEET--------TEEEEEETT
T ss_pred HHcCCCCC--CCccEEEEc-CCcEEEEEC--------CEEEEEeCC
Confidence 0 000112 122344444 899999977 568999985
No 267
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=75.54 E-value=49 Score=30.27 Aligned_cols=210 Identities=10% Similarity=0.136 Sum_probs=104.5
Q ss_pred EECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecC
Q 042793 238 AVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLD 317 (545)
Q Consensus 238 ~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 317 (545)
..++.||+.... ..+++||+. ....|+... + .+ ...+.+...++.||+. .. ...++.||+.
T Consensus 105 ~~~~~l~v~t~~-------~~l~~~d~~-g~~~~~~~~--~--~~-~~~~~~~~~~g~l~vg-t~-----~~~l~~~d~~ 165 (330)
T 3hxj_A 105 IFEDILYVTSMD-------GHLYAINTD-GTEKWRFKT--K--KA-IYATPIVSEDGTIYVG-SN-----DNYLYAINPD 165 (330)
T ss_dssp EETTEEEEECTT-------SEEEEECTT-SCEEEEEEC--S--SC-CCSCCEECTTSCEEEE-CT-----TSEEEEECTT
T ss_pred EECCEEEEEecC-------CEEEEEcCC-CCEEEEEcC--C--Cc-eeeeeEEcCCCEEEEE-cC-----CCEEEEECCC
Confidence 348888875421 268999987 434676532 1 11 1122233324567763 22 1468999998
Q ss_pred CCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEEC
Q 042793 318 AKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYG 397 (545)
Q Consensus 318 t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 397 (545)
....|..-... .. ..+.+.-.++.+|+.. ..++.|| ......|+..... ....+++...
T Consensus 166 -g~~~~~~~~~~----~~-~~~~~~d~~g~l~v~t---------~~l~~~d-~~g~~~~~~~~~~-----~~~~~~~~~~ 224 (330)
T 3hxj_A 166 -GTEKWRFKTND----AI-TSAASIGKDGTIYFGS---------DKVYAIN-PDGTEKWNFYAGY-----WTVTRPAISE 224 (330)
T ss_dssp -SCEEEEEECSS----CC-CSCCEECTTCCEEEES---------SSEEEEC-TTSCEEEEECCSS-----CCCSCCEECT
T ss_pred -CCEeEEEecCC----Cc-eeeeEEcCCCEEEEEe---------CEEEEEC-CCCcEEEEEccCC-----cceeceEECC
Confidence 54457643221 11 1122222355777754 3488898 4445567654321 1122333444
Q ss_pred CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCC
Q 042793 398 GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGL 477 (545)
Q Consensus 398 ~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~ 477 (545)
++.||+... ...++.||... ...|...... .... ..+...++.||+...
T Consensus 225 ~g~l~v~t~----------~~gl~~~~~~g-~~~~~~~~~~--------------~~~~-~~~~~~~g~l~v~t~----- 273 (330)
T 3hxj_A 225 DGTIYVTSL----------DGHLYAINPDG-TEKWRFKTGK--------------RIES-SPVIGNTDTIYFGSY----- 273 (330)
T ss_dssp TSCEEEEET----------TTEEEEECTTS-CEEEEEECSS--------------CCCS-CCEECTTSCEEEECT-----
T ss_pred CCeEEEEcC----------CCeEEEECCCC-CEeEEeeCCC--------------Cccc-cceEcCCCeEEEecC-----
Confidence 447777432 25688888652 3346543211 1111 122223677776422
Q ss_pred CCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCCC
Q 042793 478 HSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQT 528 (545)
Q Consensus 478 ~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~ 528 (545)
...+++||++ .+..|..-. +.. ...+.+...++.||+ |+.+
T Consensus 274 --~ggl~~~d~~-g~~~~~~~~-----~~~-~~~~~~~d~~g~l~~-gt~~ 314 (330)
T 3hxj_A 274 --DGHLYAINPD-GTEKWNFET-----GSW-IIATPVIDENGTIYF-GTRN 314 (330)
T ss_dssp --TCEEEEECTT-SCEEEEEEC-----SSC-CCSCCEECTTCCEEE-ECTT
T ss_pred --CCCEEEECCC-CcEEEEEEc-----CCc-cccceEEcCCCEEEE-EcCC
Confidence 2369999974 344676531 111 112333334677776 4443
No 268
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=74.00 E-value=60 Score=30.60 Aligned_cols=54 Identities=4% Similarity=0.030 Sum_probs=30.1
Q ss_pred cCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCC--ceeEEeCCeeEEEEcCCCC
Q 042793 463 PGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWG--HSTCVVGGTRTIVLGGQTG 529 (545)
Q Consensus 463 ~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~--~~~~~~~~~~l~i~GG~~~ 529 (545)
.++++++.|+.+ ..|.+||+.+ .+.+.. ....... .+.+...++++++-|+.++
T Consensus 279 pdg~~lasgs~D------~~V~iwd~~~----~~~~~~---~~~gH~~~V~~v~fSpdg~~laS~S~D~ 334 (365)
T 4h5i_A 279 MKGELAVLASND------NSIALVKLKD----LSMSKI---FKQAHSFAITEVTISPDSTYVASVSAAN 334 (365)
T ss_dssp TTSCEEEEEETT------SCEEEEETTT----TEEEEE---ETTSSSSCEEEEEECTTSCEEEEEETTS
T ss_pred CCCCceEEEcCC------CEEEEEECCC----CcEEEE---ecCcccCCEEEEEECCCCCEEEEEeCCC
Confidence 478888888854 5689999862 223321 1111111 1222334677788777664
No 269
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=73.93 E-value=53 Score=31.76 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=13.9
Q ss_pred EEEEEcCcCCCCCCCCceEEEcCCC
Q 042793 466 RILIFGGSVAGLHSATQLYLLDPTE 490 (545)
Q Consensus 466 ~l~v~GG~~~~~~~~~~v~~~d~~~ 490 (545)
.+++.|+.+ +.|.+||+..
T Consensus 291 ~~l~tg~~d------g~v~vwd~~~ 309 (430)
T 2xyi_A 291 FILATGSAD------KTVALWDLRN 309 (430)
T ss_dssp TEEEEEETT------SEEEEEETTC
T ss_pred CEEEEEeCC------CeEEEEeCCC
Confidence 478888754 5688999863
No 270
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=73.63 E-value=90 Score=32.47 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=15.4
Q ss_pred cCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 463 PGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 463 ~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
.++++++.|+.+ ..|.+||+.
T Consensus 571 pdg~~l~sg~~D------g~i~iwd~~ 591 (694)
T 3dm0_A 571 PDGSLCASGGKD------GVVLLWDLA 591 (694)
T ss_dssp TTSSEEEEEETT------SBCEEEETT
T ss_pred CCCCEEEEEeCC------CeEEEEECC
Confidence 367788888754 568888986
No 271
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=72.84 E-value=57 Score=29.86 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=31.2
Q ss_pred EEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEc-C--CEEEEEcCCCCCCCccCcEEEEecC
Q 042793 295 HLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLD-G--TKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 295 ~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
.+++.|+.+ ..+.++|+.+. .|..+...... ...-.++.+. + +.+++.|+.+ ..+.++|+.
T Consensus 72 ~~l~s~s~D-----~~v~iWd~~~~--~~~~~~~~~~h--~~~V~~v~~~p~~~g~~lasgs~D------~~i~lwd~~ 135 (316)
T 3bg1_A 72 NILASCSYD-----RKVIIWREENG--TWEKSHEHAGH--DSSVNSVCWAPHDYGLILACGSSD------GAISLLTYT 135 (316)
T ss_dssp SCEEEEETT-----SCEEEECCSSS--CCCEEEEECCC--SSCCCEEEECCTTTCSCEEEECSS------SCEEEEEEC
T ss_pred CEEEEEECC-----CEEEEEECCCC--cceEEEEccCC--CCceEEEEECCCCCCcEEEEEcCC------CCEEEEecC
Confidence 466667654 35888998877 66543322101 1111122332 1 3566666653 246777754
No 272
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=72.58 E-value=60 Score=29.96 Aligned_cols=164 Identities=8% Similarity=0.061 Sum_probs=70.2
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
.+ +++.|+.+. .+.++|+.+. .++.+.............++.+ .++.+++.|+.++ .+.++|...
T Consensus 24 ~~-~las~~~D~------~i~lw~~~~~--~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~-----~v~iw~~~~ 89 (330)
T 2hes_X 24 QG-ILATGSTDR------KIKLVSVKYD--DFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS-----TVSIWAKEE 89 (330)
T ss_dssp TT-EEEEEESSS------CEEEEECSSS--CCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS-----CEEEEEC--
T ss_pred CC-EEEEEcCCC------EEEEEEecCC--CeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC-----cEEEEEccc
Confidence 44 566666542 6778888764 3433221101101111222223 2345667776543 577777753
Q ss_pred CC---CceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCC-CCCCcEE
Q 042793 319 KP---PTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPP-SRLGHTL 393 (545)
Q Consensus 319 ~~---~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~-~r~~~~~ 393 (545)
.. ..+..+..+... ...-.++.+ .++++++.|+.+ ..+.++|+......+..+.. +.. ...-.++
T Consensus 90 ~~~~~~~~~~~~~~~~h--~~~V~~v~~sp~g~~las~s~D------~~v~iwd~~~~~~~~~~~~~--~~~h~~~v~~v 159 (330)
T 2hes_X 90 SADRTFEMDLLAIIEGH--ENEVKGVAWSNDGYYLATCSRD------KSVWIWETDESGEEYECISV--LQEHSQDVKHV 159 (330)
T ss_dssp -----CCCEEEEEEC------CEEEEEECTTSCEEEEEETT------SCEEEEECCTTCCCCEEEEE--ECCCSSCEEEE
T ss_pred CcCccccceeEEEEcCC--CCcEEEEEECCCCCEEEEEeCC------CEEEEEeccCCCCCeEEEEE--eccCCCceEEE
Confidence 20 022222211000 011112222 234566666643 24788886433234443321 111 1111222
Q ss_pred EEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecC
Q 042793 394 SVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGS 438 (545)
Q Consensus 394 ~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~ 438 (545)
....++.+++.|+.+ ..+..+|.. +..|..+..+
T Consensus 160 ~~~p~~~~l~s~s~D---------~~i~iW~~~--~~~~~~~~~~ 193 (330)
T 2hes_X 160 IWHPSEALLASSSYD---------DTVRIWKDY--DDDWECVAVL 193 (330)
T ss_dssp EECSSSSEEEEEETT---------SCEEEEEEE--TTEEEEEEEE
T ss_pred EECCCCCEEEEEcCC---------CeEEEEECC--CCCeeEEEEc
Confidence 233344667777653 456666765 5556655444
No 273
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=72.01 E-value=58 Score=29.55 Aligned_cols=147 Identities=6% Similarity=-0.056 Sum_probs=68.6
Q ss_pred ceEEEeCCCCCCceEEeccCCC--CCCccceeEEEEcCCEEEEEcCCCC------CcccCcEEEEecCCCCCceEeccCC
Q 042793 258 DTFVLDLNSSNPEWQHVHVSSP--PPGRWGHTLSCVNGSHLVVFGGCGR------QGLLNDVFVLDLDAKPPTWREISGL 329 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~~~~--~~~r~~~~~~~~~~~~iyv~GG~~~------~~~~~~~~~yd~~t~~~~W~~~~~~ 329 (545)
.+++||+.+. +++.+..... +..+. ..+++-.++++|+..-... ......++.+|+.. +...+...
T Consensus 74 ~l~~~d~~~g--~~~~~~~~~~~~~~~~~-~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g---~~~~~~~~ 147 (297)
T 3g4e_A 74 KFCALNWKEQ--SAVVLATVDNDKKNNRF-NDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH---HVKKYFDQ 147 (297)
T ss_dssp EEEEEETTTT--EEEEEEECCTTCSSEEE-EEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS---CEEEEEEE
T ss_pred eEEEEECCCC--cEEEEEecCCCCCCCCC-CCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC---CEEEEeec
Confidence 7999999887 7766542211 11122 2222222346776421111 01234688888753 23322211
Q ss_pred CCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEE---ecCCCCCC-CCCCcEEEEECCcEEEEE
Q 042793 330 APPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWRE---IPVTWTPP-SRLGHTLSVYGGRKILMF 404 (545)
Q Consensus 330 ~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~---~~~~~~p~-~r~~~~~~~~~~~~lyi~ 404 (545)
...| ...+.. +++.+|+.... .+.+++|+++..+..... +.. .+. ...-..++.-.++.||+.
T Consensus 148 -~~~p---ngi~~spdg~~lyv~~~~------~~~i~~~~~d~~~G~~~~~~~~~~--~~~~~~~p~g~~~d~~G~lwva 215 (297)
T 3g4e_A 148 -VDIS---NGLDWSLDHKIFYYIDSL------SYSVDAFDYDLQTGQISNRRSVYK--LEKEEQIPDGMCIDAEGKLWVA 215 (297)
T ss_dssp -ESBE---EEEEECTTSCEEEEEEGG------GTEEEEEEECTTTCCEEEEEEEEE--CCGGGCEEEEEEEBTTSCEEEE
T ss_pred -cccc---cceEEcCCCCEEEEecCC------CCcEEEEeccCCCCcccCcEEEEE--CCCCCCCCCeeEECCCCCEEEE
Confidence 0111 122222 35568887542 245888886433333321 111 111 111123444445578876
Q ss_pred cccCCCCCCccccCcEEEEeCCCCCCceE
Q 042793 405 GGLAKSGPLRFRSSDVFTMDLSEEEPCWR 433 (545)
Q Consensus 405 GG~~~~~~~~~~~~~i~~~d~~~~~~~W~ 433 (545)
... ...|++||++ +.+..
T Consensus 216 ~~~---------~~~v~~~d~~--tG~~~ 233 (297)
T 3g4e_A 216 CYN---------GGRVIRLDPV--TGKRL 233 (297)
T ss_dssp EET---------TTEEEEECTT--TCCEE
T ss_pred EcC---------CCEEEEEcCC--CceEE
Confidence 432 2569999997 44443
No 274
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=71.87 E-value=68 Score=31.60 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=73.2
Q ss_pred eeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccC----CCCCCccceeEEEE-cCCEEEEEcCCCCCcccC
Q 042793 235 SACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVS----SPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLN 309 (545)
Q Consensus 235 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~----~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~ 309 (545)
+++.+.+++|+|-|. .+|+++.... .+...... .+|. ... ++... .++++|+|=| +
T Consensus 267 Ai~~~~ge~y~Fkg~--------~~wr~~~~~~--~~~p~~I~~~Wp~LP~-~iD-Aa~~~~~~g~~~fFKg-------~ 327 (450)
T 1su3_A 267 AITTIRGEVMFFKDR--------FYMRTNPFYP--EVELNFISVFWPQLPN-GLE-AAYEFADRDEVRFFKG-------N 327 (450)
T ss_dssp EEEEETTEEEEEETT--------EEEECCTTSS--SCEEEEGGGTCTTSCS-SCC-EEEEEGGGTEEEEEET-------T
T ss_pred eEEecCCeEEEEeCC--------EEEEEcCCCC--cccceehhHhccCCCC-Cee-EEEEEcCCCeEEEEeC-------C
Confidence 455679999999873 5666654432 22211111 2332 122 22222 2458999976 3
Q ss_pred cEEEEecCCCCCce-Eecc-CCCCC-CCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCC---ceEEecC-
Q 042793 310 DVFVLDLDAKPPTW-REIS-GLAPP-LPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKP---VWREIPV- 381 (545)
Q Consensus 310 ~~~~yd~~t~~~~W-~~~~-~~~~~-~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~---~W~~~~~- 381 (545)
.+|+|+..+-...+ ..+. ....| .+..-.++... .++++|+|-| +..|+||....+. -=+.+..
T Consensus 328 ~~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG--------~~yw~yd~~~~~~~~gYPk~I~~~ 399 (450)
T 1su3_A 328 KYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA--------NKYWRYDEYKRSMDPGYPKMIAHD 399 (450)
T ss_dssp EEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCSEEHHHH
T ss_pred EEEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC--------CEEEEEeCCCccccCCCCcchhhc
Confidence 56777643210001 1121 01112 11222234344 2469999977 2479998432100 0011211
Q ss_pred -CCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 382 -TWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 382 -~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.+.| .... ++...++ ++|+|-| +..|+||..
T Consensus 400 fpgip-~~iD-AA~~~~g-~~YFFkg-----------~~ywr~d~~ 431 (450)
T 1su3_A 400 FPGIG-HKVD-AVFMKDG-FFYFFHG-----------TRQYKFDPK 431 (450)
T ss_dssp STTSC-SCCS-EEEEETT-EEEEEET-----------TEEEEEETT
T ss_pred CCCCC-CCcc-EEEEcCC-eEEEEeC-----------CEEEEEECC
Confidence 1222 2222 3334554 9999976 678999987
No 275
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=71.45 E-value=68 Score=30.11 Aligned_cols=189 Identities=10% Similarity=0.042 Sum_probs=92.2
Q ss_pred EEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEc--CCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 242 RVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVN--GSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 242 ~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
.+++.|+.+. .+.++|+.+. ...... ..........+..+. +..+++.|+.+ ..+.++|+.+.
T Consensus 87 ~~l~s~~~dg------~i~iwd~~~~--~~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~ 151 (383)
T 3ei3_B 87 TTVAVGSKGG------DIILWDYDVQ--NKTSFI--QGMGPGDAITGMKFNQFNTNQLFVSSIR-----GATTLRDFSGS 151 (383)
T ss_dssp TEEEEEEBTS------CEEEEETTST--TCEEEE--CCCSTTCBEEEEEEETTEEEEEEEEETT-----TEEEEEETTSC
T ss_pred CEEEEEcCCC------eEEEEeCCCc--ccceee--ecCCcCCceeEEEeCCCCCCEEEEEeCC-----CEEEEEECCCC
Confidence 5667776532 6889998876 544332 111111222223332 23566666643 35888999876
Q ss_pred CCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCc
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGR 399 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 399 (545)
....+.... .....-.+.+...++.+++.|+.+ ..+.++|+. ......+.. . ...-.+++...++
T Consensus 152 --~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~--~~~~~~~~~--h--~~~v~~~~~~~~~ 216 (383)
T 3ei3_B 152 --VIQVFAKTD-SWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLD--GHEIFKEKL--H--KAKVTHAEFNPRC 216 (383)
T ss_dssp --EEEEEECCC-CSSCCEEEEEEETTTTEEEEEETT------SEEEEEETT--SCEEEEEEC--S--SSCEEEEEECSSC
T ss_pred --ceEEEeccC-CCCCCeEEEEECCCCCEEEEECCC------CCEEEEECC--CCEEEEecc--C--CCcEEEEEECCCC
Confidence 665554321 111111222233344566666642 358889963 223333321 1 1112233333333
Q ss_pred E-EEEEcccCCCCCCccccCcEEEEeCCCCC--CceEEeecCCCCCCCCCCCCCCCCCcceEEEEe-c-CCEEEEEcCcC
Q 042793 400 K-ILMFGGLAKSGPLRFRSSDVFTMDLSEEE--PCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSL-P-GGRILIFGGSV 474 (545)
Q Consensus 400 ~-lyi~GG~~~~~~~~~~~~~i~~~d~~~~~--~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~-~-~~~l~v~GG~~ 474 (545)
. +++.|+. ...+..||+.+.. ......... . ..-.++.+ . ++++++.|+.+
T Consensus 217 ~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~--------------~-~~v~~~~~s~~~~~~l~~~~~d 272 (383)
T 3ei3_B 217 DWLMATSSV---------DATVKLWDLRNIKDKNSYIAEMPH--------------E-KPVNAAYFNPTDSTKLLTTDQR 272 (383)
T ss_dssp TTEEEEEET---------TSEEEEEEGGGCCSTTCEEEEEEC--------------S-SCEEEEEECTTTSCEEEEEESS
T ss_pred CCEEEEEeC---------CCEEEEEeCCCCCcccceEEEecC--------------C-CceEEEEEcCCCCCEEEEEcCC
Confidence 4 6777764 2567778876211 222222111 1 11123333 3 56777777753
Q ss_pred CCCCCCCceEEEcCCC
Q 042793 475 AGLHSATQLYLLDPTE 490 (545)
Q Consensus 475 ~~~~~~~~v~~~d~~~ 490 (545)
+.+.+||+.+
T Consensus 273 ------~~i~iwd~~~ 282 (383)
T 3ei3_B 273 ------NEIRVYSSYD 282 (383)
T ss_dssp ------SEEEEEETTB
T ss_pred ------CcEEEEECCC
Confidence 5688888863
No 276
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=71.35 E-value=1.1e+02 Score=32.32 Aligned_cols=224 Identities=11% Similarity=0.050 Sum_probs=99.4
Q ss_pred ECCEEEEEcCCCCCCCccCceEEEeCC---CCCCceEEeccCC-CCCCc-cceeEEEE--cCCEEEEEcCCCCCcccCcE
Q 042793 239 VGNRVVLFGGEGVNMQPMNDTFVLDLN---SSNPEWQHVHVSS-PPPGR-WGHTLSCV--NGSHLVVFGGCGRQGLLNDV 311 (545)
Q Consensus 239 ~~~~lyv~GG~~~~~~~~~~~~~~d~~---t~~~~W~~~~~~~-~~~~r-~~~~~~~~--~~~~iyv~GG~~~~~~~~~~ 311 (545)
.|+++|.+--.. ......+|+.+.. .. .|+.+-... +...- .......+ ++ +.++++..........+
T Consensus 117 dG~~~~~~~~~~--~~~~~~l~~~~~~~~~~~--~~~~lld~~~l~~~~~~~~~~~~~SPDG-~~la~~~~~~G~e~~~i 191 (741)
T 1yr2_A 117 RGASVFYSWNSG--LMNQSQLLVRPADAPVGT--KGRVLLDPNTWAKDGATALDAWAASDDG-RLLAYSVQDGGSDWRTV 191 (741)
T ss_dssp ETTEEEEEEECS--SCSSCEEEEEETTSCTTC--CCEEEECGGGCC----EEEEEEEECTTS-SEEEEEEEETTCSEEEE
T ss_pred ECCEEEEEEEcC--CCeEEEEEEEcCCccCCC--CCEEEECHHHhccCCCEEEEeEEECCCC-CEEEEEEcCCCCceEEE
Confidence 455555553211 1223578888875 44 677653111 11110 11111222 44 44444432222222469
Q ss_pred EEEecCCCCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCC--------CCccCcEEEEecCCCCCceEEecCC
Q 042793 312 FVLDLDAKPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADS--------GVLLSDTFLLDLSMEKPVWREIPVT 382 (545)
Q Consensus 312 ~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~--------~~~~~~~~~~d~~~~~~~W~~~~~~ 382 (545)
+++|+.+. ....... + ........+ .++.|++.. .... ......++.+++.+....-..+..
T Consensus 192 ~v~dl~tg--~~~~~~~---~--~~~~~~~~wspD~~l~~~~-~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~- 262 (741)
T 1yr2_A 192 KFVGVADG--KPLADEL---K--WVKFSGLAWLGNDALLYSR-FAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA- 262 (741)
T ss_dssp EEEETTTC--CEEEEEE---E--EEESCCCEESTTSEEEEEE-CCCC--------CCCCCEEEEEETTSCGGGCEEEEC-
T ss_pred EEEECCCC--CCCCccC---C--CceeccEEEECCCEEEEEE-ecCcccccccccCCCCCEEEEEECCCCchhCEEEec-
Confidence 99999998 6543311 1 111111222 233444432 2111 012346888886543211122221
Q ss_pred CCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCC--c-eEEeecCCCCCCCCCCCCCCCCCcceEE
Q 042793 383 WTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEP--C-WRCVTGSGMPGAGNPGGIAPPPRLDHVA 459 (545)
Q Consensus 383 ~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~--~-W~~v~~~~~~~~~~~~g~~p~~r~~~~~ 459 (545)
....+....+...-.+++.+++........ .+++|.+|+. +. + |+.+... ... ....
T Consensus 263 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~----~~~l~~~d~~--~~~~~~~~~l~~~------------~~~--~~~~ 322 (741)
T 1yr2_A 263 TPELPKRGHGASVSSDGRWVVITSSEGTDP----VNTVHVARVT--NGKIGPVTALIPD------------LKA--QWDF 322 (741)
T ss_dssp CTTCTTCEEEEEECTTSCEEEEEEECTTCS----CCEEEEEEEE--TTEECCCEEEECS------------SSS--CEEE
T ss_pred cCCCCeEEEEEEECCCCCEEEEEEEccCCC----cceEEEEECC--CCCCcccEEecCC------------CCc--eEEE
Confidence 111122223333333434444433222111 4789999987 44 6 8877533 111 1122
Q ss_pred EEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEec
Q 042793 460 VSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILN 499 (545)
Q Consensus 460 ~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~ 499 (545)
+.-.++.||+....+ .....++.+|+++....|+.+-
T Consensus 323 ~~~dg~~l~~~s~~~---~~~~~l~~~d~~~~~~~~~~l~ 359 (741)
T 1yr2_A 323 VDGVGDQLWFVSGDG---APLKKIVRVDLSGSTPRFDTVV 359 (741)
T ss_dssp EEEETTEEEEEECTT---CTTCEEEEEECSSSSCEEEEEE
T ss_pred EeccCCEEEEEECCC---CCCCEEEEEeCCCCccccEEEe
Confidence 223366677764432 1246799999862104688874
No 277
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=71.31 E-value=72 Score=30.33 Aligned_cols=103 Identities=13% Similarity=0.079 Sum_probs=50.6
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++++++.|+.+. .+.++|+.+. +-...- .... ..-.+++...++..++.|+.+ ..+.++|+.+.
T Consensus 134 dg~~l~s~~~d~------~i~iwd~~~~--~~~~~~--~~h~-~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~~~ 197 (393)
T 1erj_A 134 DGKFLATGAEDR------LIRIWDIENR--KIVMIL--QGHE-QDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTG 197 (393)
T ss_dssp TSSEEEEEETTS------CEEEEETTTT--EEEEEE--CCCS-SCEEEEEECTTSSEEEEEETT-----SEEEEEETTTT
T ss_pred CCCEEEEEcCCC------eEEEEECCCC--cEEEEE--ccCC-CCEEEEEEcCCCCEEEEecCC-----CcEEEEECCCC
Confidence 456666776542 6888998765 332211 1111 111222222233455566543 35888999887
Q ss_pred CCceEeccCCCCCCCCccceEEEE-c-CCEEEEEcCCCCCCCccCcEEEEecCC
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTL-D-GTKLIVSGGCADSGVLLSDTFLLDLSM 371 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~d~~~ 371 (545)
.....-.. .. ....+.+ . ++++++.|+.+ ..+.+||+.+
T Consensus 198 --~~~~~~~~--~~---~v~~~~~~~~~~~~l~~~s~d------~~v~iwd~~~ 238 (393)
T 1erj_A 198 --QCSLTLSI--ED---GVTTVAVSPGDGKYIAAGSLD------RAVRVWDSET 238 (393)
T ss_dssp --EEEEEEEC--SS---CEEEEEECSTTCCEEEEEETT------SCEEEEETTT
T ss_pred --eeEEEEEc--CC---CcEEEEEECCCCCEEEEEcCC------CcEEEEECCC
Confidence 43322111 11 1122222 2 44667777643 3478888653
No 278
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=70.19 E-value=61 Score=29.06 Aligned_cols=63 Identities=16% Similarity=0.044 Sum_probs=30.8
Q ss_pred EcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 291 VNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 291 ~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
.++ ..++.|+.+ ..+.+||+.+. .-...... . ...-.+.+...++.+++.|+.+ ..+..+++.
T Consensus 27 ~~~-~~l~s~~~d-----g~v~vw~~~~~--~~~~~~~~--~-~~~v~~~~~~~~~~~l~~~~~d------g~i~~~~~~ 89 (313)
T 3odt_A 27 VDD-SKVASVSRD-----GTVRLWSKDDQ--WLGTVVYT--G-QGFLNSVCYDSEKELLLFGGKD------TMINGVPLF 89 (313)
T ss_dssp EET-TEEEEEETT-----SEEEEEEESSS--EEEEEEEE--C-SSCEEEEEEETTTTEEEEEETT------SCEEEEETT
T ss_pred cCC-CEEEEEEcC-----CcEEEEECCCC--EEEEEeec--C-CccEEEEEECCCCCEEEEecCC------CeEEEEEee
Confidence 344 456666643 35888998776 33222111 1 1111222233344666666643 246777754
No 279
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=69.66 E-value=0.51 Score=42.89 Aligned_cols=87 Identities=8% Similarity=-0.044 Sum_probs=34.4
Q ss_pred EEeecCCCCEEEEEEEeeeeeecccCCCCCCchhHHHhhhhhhhhccccc-----CCCcc---cCCC-CccccccCcccc
Q 042793 68 SPIYGDDETITHVIGIQFFTEANVDLGPVPGYPVKEFLKSSERQRSFFSG-----NRTFP---IGDR-NVCREVCGIFQL 138 (545)
Q Consensus 68 ~pi~d~~g~~~~~i~~~~Dite~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~~---~g~~-~~~~~~~~~~~l 138 (545)
.+++|+++....+.....+.++.+..+ ......+++.+.+++++.++++ +..+. ++.. .+|++++.+.|+
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~ 101 (258)
T 3p7n_A 23 RDLYDDDDKDHPFTMGQDRPIDGSGAP-GADDTRVEVQPPAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGY 101 (258)
T ss_dssp ---------------------------------------CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCC
T ss_pred CCccccCCCcCceeccCCCCCCcccCC-cchhhHHHHHhHHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCC
Confidence 456666666554444434343333221 1112233445566778887774 45555 5545 389999999999
Q ss_pred -hhhHHHHHhhccCChhh
Q 042793 139 -SDEVISLKILSWLSPRD 155 (545)
Q Consensus 139 -p~~~~~~~~~~~l~~~~ 155 (545)
++|+++..+..+.++.+
T Consensus 102 ~~~el~g~~~~~l~~~~~ 119 (258)
T 3p7n_A 102 SEEECVGRNCRFLAGSGT 119 (258)
T ss_dssp CGGGTTTSCGGGGCCTTC
T ss_pred CHHHHCCCChhhccCCCC
Confidence 78888755555555543
No 280
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=69.44 E-value=70 Score=29.47 Aligned_cols=164 Identities=10% Similarity=0.102 Sum_probs=72.2
Q ss_pred EcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEec
Q 042793 291 VNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDL 369 (545)
Q Consensus 291 ~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~ 369 (545)
+.++ +++.|+.+ ..+.++|+.++ .+..+...........-.++.+ .++.+++.|+.+ ..+.++|+
T Consensus 22 ~s~~-~las~~~D-----~~i~lw~~~~~--~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D------~~v~iw~~ 87 (330)
T 2hes_X 22 FSQG-ILATGSTD-----RKIKLVSVKYD--DFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD------STVSIWAK 87 (330)
T ss_dssp EETT-EEEEEESS-----SCEEEEECSSS--CCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT------SCEEEEEC
T ss_pred cCCC-EEEEEcCC-----CEEEEEEecCC--CeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC------CcEEEEEc
Confidence 4454 56666644 35788888775 4433221100101111112222 234666667653 24677775
Q ss_pred CCCC---CceEEecCCCCC-CCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCC
Q 042793 370 SMEK---PVWREIPVTWTP-PSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGN 445 (545)
Q Consensus 370 ~~~~---~~W~~~~~~~~p-~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~ 445 (545)
.... ..+..+.. +. ....-.+++...++.+++.|+.+ ..+..+|+......+..+..+
T Consensus 88 ~~~~~~~~~~~~~~~--~~~h~~~V~~v~~sp~g~~las~s~D---------~~v~iwd~~~~~~~~~~~~~~------- 149 (330)
T 2hes_X 88 EESADRTFEMDLLAI--IEGHENEVKGVAWSNDGYYLATCSRD---------KSVWIWETDESGEEYECISVL------- 149 (330)
T ss_dssp -------CCCEEEEE--EC----CEEEEEECTTSCEEEEEETT---------SCEEEEECCTTCCCCEEEEEE-------
T ss_pred ccCcCccccceeEEE--EcCCCCcEEEEEECCCCCEEEEEeCC---------CEEEEEeccCCCCCeEEEEEe-------
Confidence 3210 12222211 10 01111123333344666676642 567777874212345544333
Q ss_pred CCCCCCCCCcceEEEEe-cCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEec
Q 042793 446 PGGIAPPPRLDHVAVSL-PGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILN 499 (545)
Q Consensus 446 ~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~ 499 (545)
......-.++.. .++.+++.|+.+ ..+.++|.. +..|..+.
T Consensus 150 -----~~h~~~v~~v~~~p~~~~l~s~s~D------~~i~iW~~~--~~~~~~~~ 191 (330)
T 2hes_X 150 -----QEHSQDVKHVIWHPSEALLASSSYD------DTVRIWKDY--DDDWECVA 191 (330)
T ss_dssp -----CCCSSCEEEEEECSSSSEEEEEETT------SCEEEEEEE--TTEEEEEE
T ss_pred -----ccCCCceEEEEECCCCCEEEEEcCC------CeEEEEECC--CCCeeEEE
Confidence 111111223332 356777877754 456777764 34455543
No 281
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=69.41 E-value=1.2e+02 Score=32.06 Aligned_cols=144 Identities=13% Similarity=0.006 Sum_probs=70.1
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++.|+++||.. +-+++||+.+. +++.+..........-.++..-.++.|++.. . +.+.+||+.++
T Consensus 482 ~g~lWi~~~t~------~Gl~~~d~~~~--~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~------~Gl~~~~~~~~ 546 (758)
T 3ott_A 482 EGNVWVLLYNN------KGIDKINPRTR--EVTKLFADELTGEKSPNYLLCDEDGLLWVGF-H------GGVMRINPKDE 546 (758)
T ss_dssp TSCEEEEETTC------SSEEEEETTTT--EEEEECTTTSCGGGCEEEEEECTTSCEEEEE-T------TEEEEECC--C
T ss_pred CCCEEEEccCC------CCcEEEeCCCC--ceEEecCCCcCCCcccceEEECCCCCEEEEe-c------CceEEEecCCC
Confidence 45788866542 25899999887 7876532222111111222222334677643 1 24899999888
Q ss_pred CCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCc
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGR 399 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 399 (545)
+++.+.....|. ..-.+.+. +++.|++... +-+.+||+. +.+..... ++......++....++
T Consensus 547 --~~~~~~~~gl~~-~~i~~i~~-~~g~lWi~t~--------~Gl~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~G 609 (758)
T 3ott_A 547 --SQQSISFGSFSN-NEILSMTC-VKNSIWVSTT--------NGLWIIDRK--TMDARQQN---MTNKRFTSLLFDPKED 609 (758)
T ss_dssp --CCCBCCCCC----CCEEEEEE-ETTEEEEEES--------SCEEEEETT--TCCEEEC-----CCCCCSEEEEETTTT
T ss_pred --ceEEecccCCCc-cceEEEEE-CCCCEEEECC--------CCeEEEcCC--CceeEEec---CCCCceeeeEEECCCC
Confidence 666553211121 12222333 4558888543 237899954 44554432 2332233222222344
Q ss_pred EEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 400 KILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 400 ~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.|| +||. +.+..|+|+
T Consensus 610 ~l~-fG~~----------~Gl~~f~p~ 625 (758)
T 3ott_A 610 CVY-LGGA----------DGFGISHSN 625 (758)
T ss_dssp EEE-EECB----------SEEEEEEC-
T ss_pred cEE-EecC----------CceEEEChh
Confidence 665 5653 456666665
No 282
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=67.90 E-value=70 Score=28.86 Aligned_cols=153 Identities=11% Similarity=0.104 Sum_probs=71.6
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEEe-ccCCCCCC-ccceeEEEEcCCEEEEEcCCCC----------Cccc
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHV-HVSSPPPG-RWGHTLSCVNGSHLVVFGGCGR----------QGLL 308 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~-~~~~~~~~-r~~~~~~~~~~~~iyv~GG~~~----------~~~~ 308 (545)
+.||+.... +.+++||+. . +...+ .......+ ..-+.++.-.++++|+...... ....
T Consensus 83 g~l~v~~~~-------~~l~~~d~~-g--~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 152 (314)
T 1pjx_A 83 NQLFVADMR-------LGLLVVQTD-G--TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF 152 (314)
T ss_dssp SEEEEEETT-------TEEEEEETT-S--CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred CcEEEEECC-------CCEEEEeCC-C--CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCC
Confidence 688887642 268999987 5 66554 21111111 1123333333457887653221 1122
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCCCccceEEEE----cCC-EEEEEcCCCCCCCccCcEEEEecCCCCCceEEecC-C
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL----DGT-KLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPV-T 382 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~----~~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~-~ 382 (545)
..++.||+. . +...+... ...+ ...+.. .++ .+|+.... .+.+++|+++. ..+...... .
T Consensus 153 ~~l~~~~~~-g--~~~~~~~~-~~~~---~~i~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~-~g~~~~~~~~~ 218 (314)
T 1pjx_A 153 GSIYCFTTD-G--QMIQVDTA-FQFP---NGIAVRHMNDGRPYQLIVAETP------TKKLWSYDIKG-PAKIENKKVWG 218 (314)
T ss_dssp EEEEEECTT-S--CEEEEEEE-ESSE---EEEEEEECTTSCEEEEEEEETT------TTEEEEEEEEE-TTEEEEEEEEE
T ss_pred CeEEEECCC-C--CEEEeccC-CCCc---ceEEEecccCCCCCEEEEEECC------CCeEEEEECCC-CCccccceEEE
Confidence 568889887 4 44443211 0111 122222 233 57776432 14588888641 122221100 0
Q ss_pred CCCCC--CCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 383 WTPPS--RLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 383 ~~p~~--r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
..+.. ..-..++.-.++.+|+.... .+.|++||+.
T Consensus 219 ~~~~~~~~~p~~i~~d~~G~l~v~~~~---------~~~i~~~d~~ 255 (314)
T 1pjx_A 219 HIPGTHEGGADGMDFDEDNNLLVANWG---------SSHIEVFGPD 255 (314)
T ss_dssp ECCCCSSCEEEEEEEBTTCCEEEEEET---------TTEEEEECTT
T ss_pred ECCCCCCCCCCceEECCCCCEEEEEcC---------CCEEEEEcCC
Confidence 01111 11123444444578876432 2578899987
No 283
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=67.42 E-value=78 Score=29.24 Aligned_cols=65 Identities=9% Similarity=-0.039 Sum_probs=35.8
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
.+.+++.|+.+. .+.++|+.+. +-..+.... ....-.+++...++.+++.|+.+ ..+.+||+.+.
T Consensus 138 ~~~~l~s~s~dg------~i~~wd~~~~--~~~~~~~~~--~~~~i~~~~~~pdg~~lasg~~d-----g~i~iwd~~~~ 202 (343)
T 3lrv_A 138 NTEYFIWADNRG------TIGFQSYEDD--SQYIVHSAK--SDVEYSSGVLHKDSLLLALYSPD-----GILDVYNLSSP 202 (343)
T ss_dssp -CCEEEEEETTC------CEEEEESSSS--CEEEEECCC--SSCCCCEEEECTTSCEEEEECTT-----SCEEEEESSCT
T ss_pred CCCEEEEEeCCC------cEEEEECCCC--cEEEEEecC--CCCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCC
Confidence 345666676542 6888998876 433222111 11111233333344677777754 36899999887
No 284
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=66.42 E-value=79 Score=28.89 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=20.1
Q ss_pred cCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEecc
Q 042793 463 PGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNV 500 (545)
Q Consensus 463 ~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~ 500 (545)
.++.+++.||.+ ..+.+|+... ...|..+..
T Consensus 272 p~g~~las~~~D------~~v~lw~~~~-~g~~~~~~~ 302 (316)
T 3bg1_A 272 ITANILAVSGGD------NKVTLWKESV-DGQWVCISD 302 (316)
T ss_dssp TTTCCEEEEESS------SCEEEEEECT-TSCEEEEEE
T ss_pred CCCCEEEEEcCC------CeEEEEEECC-CCcEEEeee
Confidence 367777887754 3466666542 467988854
No 285
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=66.30 E-value=1e+02 Score=30.09 Aligned_cols=115 Identities=17% Similarity=0.044 Sum_probs=57.0
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCce-EEeccCCCCCCccceeEEEEcCCEEEEEcCCC----CCcccCcEEEE
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEW-QHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCG----RQGLLNDVFVL 314 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W-~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~----~~~~~~~~~~y 314 (545)
++.+||.-...... . +.+.++|+.+. +- ..++.... | +.+..-+++++||.--.. .....+.+.++
T Consensus 84 ~~~vyV~n~~~~~~-~-~~VsVID~~t~--~vv~~I~vG~~--P---gia~SpDgk~lyVan~~~~~~~~G~~~~~Vsvi 154 (426)
T 3c75_H 84 ARRVYIQDPAHFAA-I-TQQFVIDGSTG--RILGMTDGGFL--P---HPVAAEDGSFFAQASTVFERIARGKRTDYVEVF 154 (426)
T ss_dssp TTEEEEEECTTTCS-S-EEEEEEETTTT--EEEEEEEECSS--C---EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEECCCcCCC-C-CeEEEEECCCC--EEEEEEECCCC--C---ceEECCCCCEEEEEeccccccccCCCCCEEEEE
Confidence 34677775422111 1 68999999876 32 22332221 2 222223667888873100 00123579999
Q ss_pred ecCCCCCceE-eccCCCCCC---CCccce-EEEEcCCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 315 DLDAKPPTWR-EISGLAPPL---PRSWHS-SCTLDGTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 315 d~~t~~~~W~-~~~~~~~~~---~r~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
|+.+. +-. .++-...+. ...-+. ...-+|+.+|+..-. ..+.+.++|+.
T Consensus 155 D~~t~--~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~-----~~~~VsVID~~ 208 (426)
T 3c75_H 155 DPVTF--LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS-----PAPAVGVVDLE 208 (426)
T ss_dssp CTTTC--CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS-----SSCEEEEEETT
T ss_pred ECCCC--cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC-----CCCeEEEEECC
Confidence 99987 322 222100000 011122 233367788986421 13568999955
No 286
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=65.87 E-value=63 Score=27.59 Aligned_cols=109 Identities=12% Similarity=0.130 Sum_probs=55.3
Q ss_pred cCCEEEEEcCCCCCCCccCcEEEEecCCCCCc---eEEecCC--CCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccC
Q 042793 344 DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPV---WREIPVT--WTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSS 418 (545)
Q Consensus 344 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~---W~~~~~~--~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~ 418 (545)
.++++|+|-|. ..|+|+- .+.. =..+... ++|.....++.....++++|+|-| +
T Consensus 60 ~~g~~yfFkg~--------~yw~~~~--~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG-----------~ 118 (196)
T 3c7x_A 60 KDGKFVFFKGD--------KHWVFDE--ASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG-----------N 118 (196)
T ss_dssp TTSCEEEEETT--------EEEEEET--TEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET-----------T
T ss_pred CCCcEEEecCC--------EEEEEeC--CcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC-----------C
Confidence 45589998762 4688872 2111 1123221 244333444333233459999966 6
Q ss_pred cEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCC-EEEEEcCcCCCCCCCCceEEEcCC
Q 042793 419 DVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGG-RILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 419 ~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
..|+||.. +.+ +.. +-|.....-...| ..-.+++...++ ++|+|-| +..|.||..
T Consensus 119 ~yw~yd~~--~~~---v~~-gyPk~i~~~~gip--~~idaAf~~~~~~~~YfFkg--------~~y~r~d~~ 174 (196)
T 3c7x_A 119 KYYRFNEE--LRA---VDS-EYPKNIKVWEGIP--ESPRGSFMGSDEVFTYFYKG--------NKYWKFNNQ 174 (196)
T ss_dssp EEEEEETT--TTE---ECT-TCSEEGGGSBTCC--SSCSEEEECTTSSEEEEEET--------TEEEEEETT
T ss_pred EEEEEeCC--ccc---ccC-CCCccHHHCCCcC--CCcceeEEecCCCEEEEEEC--------CEEEEEECC
Confidence 78999976 321 111 0000000000112 223445555444 8999977 568999985
No 287
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=65.51 E-value=89 Score=29.17 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++..++-||.+. .+.++|..+. ...... ..+.. .-.+++...+...++.||.++ .+.+|+....
T Consensus 75 d~~~l~s~s~Dg------~v~vWd~~~~--~~~~~~--~~~~~-~v~~~~~sp~g~~lasg~~d~-----~i~v~~~~~~ 138 (354)
T 2pbi_B 75 DKRRIVSSSQDG------KVIVWDSFTT--NKEHAV--TMPCT-WVMACAYAPSGCAIACGGLDN-----KCSVYPLTFD 138 (354)
T ss_dssp TSSEEEEEETTS------EEEEEETTTC--CEEEEE--ECSSS-CCCEEEECTTSSEEEEESTTS-----EEEEEECCCC
T ss_pred CCCEEEEEeCCC------eEEEEECCCC--CcceEE--ecCCC-CEEEEEECCCCCEEEEeeCCC-----CEEEEEEecc
Confidence 345666666542 5778887665 332211 11211 112333333446777777653 4667776543
No 288
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=65.39 E-value=80 Score=28.63 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=27.7
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCC--CccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCC
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLP--RSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSME 372 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~--r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 372 (545)
+.+.++|+.+. +-...-.. +.. +....+..-+++.+|+.+... ..++++|+.+.
T Consensus 11 ~~v~~~d~~~~--~~~~~~~~--~~~~~~~~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~ 66 (337)
T 1pby_B 11 DKLVVIDTEKM--AVDKVITI--ADAGPTPMVPMVAPGGRIAYATVNKS------ESLVKIDLVTG 66 (337)
T ss_dssp TEEEEEETTTT--EEEEEEEC--TTCTTCCCCEEECTTSSEEEEEETTT------TEEEEEETTTC
T ss_pred CeEEEEECCCC--cEEEEEEc--CCCCCCccceEEcCCCCEEEEEeCCC------CeEEEEECCCC
Confidence 46899999887 33321111 110 111122222455777776431 45899997544
No 289
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=64.31 E-value=68 Score=27.39 Aligned_cols=153 Identities=12% Similarity=0.153 Sum_probs=75.2
Q ss_pred eeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCce-EEecc--CCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcE
Q 042793 235 SACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEW-QHVHV--SSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDV 311 (545)
Q Consensus 235 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W-~~~~~--~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 311 (545)
+++.+.+++|+|-|. .+|+++........ +.+.. ..+|. ....+. ...++++|+|-| +.+
T Consensus 10 A~~~~~g~~~fFkg~--------~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~-~~~~g~~yfFkg-------~~y 72 (196)
T 3c7x_A 10 TVAMLRGEMFVFKER--------WFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAY-ERKDGKFVFFKG-------DKH 72 (196)
T ss_dssp EEEEETTEEEEEETT--------EEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEE-ECTTSCEEEEET-------TEE
T ss_pred EEEEcCCEEEEEECC--------EEEEEECCccCCCCceEhhHhccCCCC-CccEEE-EeCCCcEEEecC-------CEE
Confidence 345678999999874 67777532110011 12211 13443 232222 223457999977 457
Q ss_pred EEEecCCCCCce-EeccCCC--CCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCc---eEEecC-CC
Q 042793 312 FVLDLDAKPPTW-REISGLA--PPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPV---WREIPV-TW 383 (545)
Q Consensus 312 ~~yd~~t~~~~W-~~~~~~~--~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~---W~~~~~-~~ 383 (545)
|.|+..+..... ..|...- .|... -.++... .++++|+|-|. ..|+||....+.. =..+.. .+
T Consensus 73 w~~~~~~~~~gyPk~I~~~~~glP~~~-IDAA~~~~~~g~~yfFkG~--------~yw~yd~~~~~v~~gyPk~i~~~~g 143 (196)
T 3c7x_A 73 WVFDEASLEPGYPKHIKELGRGLPTDK-IDAALFWMPNGKTYFFRGN--------KYYRFNEELRAVDSEYPKNIKVWEG 143 (196)
T ss_dssp EEEETTEECTTCSEEGGGTCBSCCSSC-CSEEEEETTTTEEEEEETT--------EEEEEETTTTEECTTCSEEGGGSBT
T ss_pred EEEeCCcccCCCCeEhhhcCCCCCCCc-ccEEEEEccCCEEEEEECC--------EEEEEeCCcccccCCCCccHHHCCC
Confidence 888754320000 1233211 13222 2333333 34699999773 4789985321000 011111 12
Q ss_pred CCCCCCCcEEEEECC-cEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 384 TPPSRLGHTLSVYGG-RKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 384 ~p~~r~~~~~~~~~~-~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
+|. .-.++....+ +++|++-| +..|+||..
T Consensus 144 ip~--~idaAf~~~~~~~~YfFkg-----------~~y~r~d~~ 174 (196)
T 3c7x_A 144 IPE--SPRGSFMGSDEVFTYFYKG-----------NKYWKFNNQ 174 (196)
T ss_dssp CCS--SCSEEEECTTSSEEEEEET-----------TEEEEEETT
T ss_pred cCC--CcceeEEecCCCEEEEEEC-----------CEEEEEECC
Confidence 222 2234444433 38999866 678999976
No 290
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=63.74 E-value=1.3e+02 Score=30.32 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=14.6
Q ss_pred CCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 464 GGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 464 ~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
++.+++.|+.+ ..+.+||+.
T Consensus 263 ~~~~l~~~~~d------~~i~~wd~~ 282 (615)
T 1pgu_A 263 DSQKFATVGAD------ATIRVWDVT 282 (615)
T ss_dssp SSSEEEEEETT------SEEEEEETT
T ss_pred CCCEEEEEcCC------CcEEEEECC
Confidence 66777777743 568899986
No 291
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=63.56 E-value=1e+02 Score=29.24 Aligned_cols=271 Identities=14% Similarity=0.003 Sum_probs=0.0
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCC----cccCcEEEEe
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQ----GLLNDVFVLD 315 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd 315 (545)
+..+|+.-+....... .+++||+.+. +.+. .++.....+-+..-+++++|+.--.... ...+.+.+||
T Consensus 32 ~~~~yv~~~~~~~~~~--~v~v~D~~t~----~~~~--~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 32 GRRSYINLPAHHSAII--QQWVLDAGSG----SILG--HVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred CCEEEEeCCcccCCcc--EEEEEECCCC----eEEE--EecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Q ss_pred cCCCCCceEeccCCCCC-------CCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCC----C
Q 042793 316 LDAKPPTWREISGLAPP-------LPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTW----T 384 (545)
Q Consensus 316 ~~t~~~~W~~~~~~~~~-------~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~----~ 384 (545)
+.+. +.+...+.+ ...-...+..-+|+.+|+ ......+.+.++| .+.+..-+.++... .
T Consensus 104 ~~t~----~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v-----~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~ 173 (373)
T 2mad_H 104 PVTF----LPIADIELPDAPRFDVGPYSWMNANTPNNADLLF-----FQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIH 173 (373)
T ss_pred CCCC----cEEEEEECCCccccccCCCccceEECCCCCEEEE-----EecCCCCeEEEEE-CCCCEEeEEcCCCceEEEE
Q ss_pred CCCCCCcEEEEECCcEEEEEcccCCCCCCccc-----------------------------cCcEEEEeCCCCCCceEEe
Q 042793 385 PPSRLGHTLSVYGGRKILMFGGLAKSGPLRFR-----------------------------SSDVFTMDLSEEEPCWRCV 435 (545)
Q Consensus 385 p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~-----------------------------~~~i~~~d~~~~~~~W~~v 435 (545)
|.....+.+..-++ ++.++.- ......... ...++..|.. +.+-..+
T Consensus 174 ~~~~~~~~~~~~dg-~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~--~~~~~v~ 249 (373)
T 2mad_H 174 PGAPSTFYLLCAQG-GLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADIS--AAGATNK 249 (373)
T ss_pred eCCCceEEEEcCCC-CEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEecc--CCcceEe
Q ss_pred ecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEE---EcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCCCCCce
Q 042793 436 TGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILI---FGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHS 512 (545)
Q Consensus 436 ~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v---~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~ 512 (545)
....+..................++.-.++++|| -++........++|+++|++ +.+.+ ...+.+...+.
T Consensus 250 ~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~----t~~vv---~~i~~g~~p~~ 322 (373)
T 2mad_H 250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL----VGQTS---SQISLGHDVDA 322 (373)
T ss_pred eeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECC----CCEEE---EEEECCCCcCe
Q ss_pred eEEeCCee-EEEEcCCCCcccccccceeeeecc
Q 042793 513 TCVVGGTR-TIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 513 ~~~~~~~~-l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
..+..+++ +++.+....+. |.++|+.+
T Consensus 323 i~~s~Dg~~~l~v~~~~~~~-----V~ViD~~t 350 (373)
T 2mad_H 323 ISVAQDGGPDLYALSAGTEV-----LHIYDAGA 350 (373)
T ss_pred EEECCCCCeEEEEEcCCCCe-----EEEEECCC
No 292
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=62.62 E-value=1.5e+02 Score=30.78 Aligned_cols=77 Identities=10% Similarity=0.017 Sum_probs=36.7
Q ss_pred CCEEEEEcCCCCCC---CccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEec
Q 042793 240 GNRVVLFGGEGVNM---QPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDL 316 (545)
Q Consensus 240 ~~~lyv~GG~~~~~---~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 316 (545)
+++.++++..+... .....++++|+.+. +-+.+........+.......-++++|. ++.. +.++++|.
T Consensus 71 Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~~~~SPdG~~la-~~~~------~~i~~~~~ 141 (723)
T 1xfd_A 71 DREYALFSYNVEPIYQHSYTGYYVLSKIPHG--DPQSLDPPEVSNAKLQYAGWGPKGQQLI-FIFE------NNIYYCAH 141 (723)
T ss_dssp TSSEEEEEESCCCCSSSCCCSEEEEEESSSC--CCEECCCTTCCSCCCSBCCBCSSTTCEE-EEET------TEEEEESS
T ss_pred CCCEEEEEecCccceeecceeeEEEEECCCC--ceEeccCCccccccccccEECCCCCEEE-EEEC------CeEEEEEC
Confidence 45555555432211 12368999999887 5455432111111111111112444443 3332 36888888
Q ss_pred CCCCCceEecc
Q 042793 317 DAKPPTWREIS 327 (545)
Q Consensus 317 ~t~~~~W~~~~ 327 (545)
.+. .-..+.
T Consensus 142 ~~g--~~~~~~ 150 (723)
T 1xfd_A 142 VGK--QAIRVV 150 (723)
T ss_dssp SSS--CCEEEE
T ss_pred CCC--ceEEEe
Confidence 876 444443
No 293
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=62.37 E-value=1.1e+02 Score=29.28 Aligned_cols=115 Identities=17% Similarity=0.075 Sum_probs=58.2
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCce-EEeccCCCCCCccceeEEEEcCCEEEEEcCCCC---C-cccCcEEEE
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEW-QHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGR---Q-GLLNDVFVL 314 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W-~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~---~-~~~~~~~~y 314 (545)
++.+||.-.... ...+.++++|..+. +- ..++.... -+.+..-+++++|+...... . ...+.+.++
T Consensus 44 ~~~vyV~~~~~~--~~~~~V~ViD~~t~--~v~~~I~vG~~-----P~va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 44 ARRVYVNDPAHF--AAVTQQFVIDGEAG--RVIGMIDGGFL-----PNPVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp TTEEEEEECGGG--CSSEEEEEEETTTT--EEEEEEEECSS-----CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEcCccc--CCCCEEEEEECCCC--eEEEEEECCCC-----CcEEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 456787743210 11258999999876 32 22332222 24222235678998752110 0 123569999
Q ss_pred ecCCCCCceE-eccCCCCC---CCCccc-eEEEEcCCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 315 DLDAKPPTWR-EISGLAPP---LPRSWH-SSCTLDGTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 315 d~~t~~~~W~-~~~~~~~~---~~r~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
|+.|. +-. .++..... ....-+ .+..-+|+.+|+.... ..+.+.++|+.
T Consensus 115 D~~t~--~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~-----~~~~VsVID~~ 168 (386)
T 3sjl_D 115 DPVTL--LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-----PAPAVGVVDLE 168 (386)
T ss_dssp CTTTC--CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS-----SSCEEEEEETT
T ss_pred ECCCC--eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC-----CCCeEEEEECC
Confidence 99988 322 23211000 011122 2233367788987431 12568999955
No 294
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=60.74 E-value=1.2e+02 Score=29.14 Aligned_cols=151 Identities=12% Similarity=0.069 Sum_probs=77.3
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEE-EcCCEEEEEcCCCCCcccCcEEEEecCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSC-VNGSHLVVFGGCGRQGLLNDVFVLDLDA 318 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~t 318 (545)
++.||+....+ ..+.++|+.+. +-..+... ...+ + ++. -.++.||+...... ..++++|+.+
T Consensus 141 ~g~lyv~d~~~------~~I~~id~~~g--~~~~~~~~-~~~~---~-ia~~~~g~~l~~~d~~~~----~~I~~~d~~~ 203 (409)
T 3hrp_A 141 NNTVLAYQRDD------PRVRLISVDDN--KVTTVHPG-FKGG---K-PAVTKDKQRVYSIGWEGT----HTVYVYMKAS 203 (409)
T ss_dssp TTEEEEEETTT------TEEEEEETTTT--EEEEEEET-CCBC---B-CEECTTSSEEEEEBSSTT----CEEEEEEGGG
T ss_pred CCCEEEEecCC------CcEEEEECCCC--EEEEeecc-CCCC---c-eeEecCCCcEEEEecCCC----ceEEEEEcCC
Confidence 57899886521 37999999876 55544321 1112 2 232 24456777654221 1689999876
Q ss_pred CCCceEeccCCCCCCCCccceEEEEc-CCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCC-CCCCCCCC-c-EEE
Q 042793 319 KPPTWREISGLAPPLPRSWHSSCTLD-GTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVT-WTPPSRLG-H-TLS 394 (545)
Q Consensus 319 ~~~~W~~~~~~~~~~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~-~~p~~r~~-~-~~~ 394 (545)
.. ....+.....+....-+..+... ++.||+... ...+++||+... ....+... ........ . .++
T Consensus 204 ~~-~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~--~~~~~~~~~~~g~~~~~P~~~ia 273 (409)
T 3hrp_A 204 GW-APTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQ--EVTLIKQLELSGSLGTNPGPYLI 273 (409)
T ss_dssp TT-CEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTC--CEEEEEECCCCSCCCCSSCCEEE
T ss_pred Cc-eeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCC--CEEEEecccccCCCCCCccccEE
Confidence 51 12233111000112222333333 568998432 136899996533 44433110 01111122 1 455
Q ss_pred EEC-CcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 395 VYG-GRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 395 ~~~-~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
... ++.||+.... .+.|++|++.
T Consensus 274 ~~p~~g~lyv~d~~---------~~~I~~~~~~ 297 (409)
T 3hrp_A 274 YYFVDSNFYMSDQN---------LSSVYKITPD 297 (409)
T ss_dssp EETTTTEEEEEETT---------TTEEEEECTT
T ss_pred EeCCCCEEEEEeCC---------CCEEEEEecC
Confidence 554 4699987543 4779999987
No 295
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=59.47 E-value=74 Score=27.87 Aligned_cols=112 Identities=11% Similarity=0.128 Sum_probs=57.3
Q ss_pred cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEe------cC--CCCCCC----CCCcEEEEECCcEEEEEcccCCCC
Q 042793 344 DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREI------PV--TWTPPS----RLGHTLSVYGGRKILMFGGLAKSG 411 (545)
Q Consensus 344 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~------~~--~~~p~~----r~~~~~~~~~~~~lyi~GG~~~~~ 411 (545)
.++++|+|-|. ..|+||..+.+..-..+ .. ..+|.. ...++...-.++++|+|-|
T Consensus 69 ~~g~~~fFkg~--------~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG----- 135 (225)
T 3oyo_A 69 EASEAYVFSGN--------HSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG----- 135 (225)
T ss_dssp STTEEEEEETT--------EEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET-----
T ss_pred CCCeEEEEcCC--------EEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC-----
Confidence 45699999773 47888754332222111 11 123321 2222222123459999976
Q ss_pred CCccccCcEEEEeCCCCCCceEE----eecCCCCCCCCCCCCCCCCCcceEEEEe-cCCEEEEEcCcCCCCCCCCceEEE
Q 042793 412 PLRFRSSDVFTMDLSEEEPCWRC----VTGSGMPGAGNPGGIAPPPRLDHVAVSL-PGGRILIFGGSVAGLHSATQLYLL 486 (545)
Q Consensus 412 ~~~~~~~~i~~~d~~~~~~~W~~----v~~~~~~~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~v~~~ 486 (545)
+..|+||.. +.+... +.. +.++.. ....+..-.+++.. .++++|+|-| +..|.|
T Consensus 136 ------~~yw~~d~~--~~~~~~gPk~I~~-~fpg~~----~~~f~~~iDAAf~~~~~g~~YfFkG--------~~ywr~ 194 (225)
T 3oyo_A 136 ------NKYVRIAYD--SKQLVGNIRNIGD-GFPVLN----GTEFESGIDACFASHKEPEAYLFKG--------QNYVRI 194 (225)
T ss_dssp ------TEEEEEETT--TTEEEEEEEEHHH-HCGGGT----TSTTTTCCSEEEECSSTTEEEEEET--------TEEEEE
T ss_pred ------CeEEEEECC--CCeecCCCcchhh-cCCCcc----cccCCCCcCEEEEeCCCCEEEEEEC--------CEEEEE
Confidence 678999976 333221 111 000000 00112223345553 4789999977 568999
Q ss_pred cCC
Q 042793 487 DPT 489 (545)
Q Consensus 487 d~~ 489 (545)
|..
T Consensus 195 d~~ 197 (225)
T 3oyo_A 195 DFT 197 (225)
T ss_dssp ECC
T ss_pred eCC
Confidence 985
No 296
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=58.48 E-value=65 Score=28.23 Aligned_cols=107 Identities=11% Similarity=0.174 Sum_probs=56.9
Q ss_pred ECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEecc--------CCCCCC----ccceeEEEEcCCEEEEEcCCCCCc
Q 042793 239 VGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHV--------SSPPPG----RWGHTLSCVNGSHLVVFGGCGRQG 306 (545)
Q Consensus 239 ~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~--------~~~~~~----r~~~~~~~~~~~~iyv~GG~~~~~ 306 (545)
..+++|+|-|. .+|+||..+....-..+.. ..+|.. .-..+...-.++++|+|-|
T Consensus 69 ~~g~~~fFkg~--------~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG----- 135 (225)
T 3oyo_A 69 EASEAYVFSGN--------HSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG----- 135 (225)
T ss_dssp STTEEEEEETT--------EEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET-----
T ss_pred CCCeEEEEcCC--------EEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC-----
Confidence 57999999873 7899976432112221110 012220 2222211113569999987
Q ss_pred ccCcEEEEecCCCCCceEe----ccC-CCC----CCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 307 LLNDVFVLDLDAKPPTWRE----ISG-LAP----PLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 307 ~~~~~~~yd~~t~~~~W~~----~~~-~~~----~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
+..|+||..++ +... +.. .+. ..+..-.++... .++++|+|-|. ..|+||..
T Consensus 136 --~~yw~~d~~~~--~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~--------~ywr~d~~ 197 (225)
T 3oyo_A 136 --NKYVRIAYDSK--QLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ--------NYVRIDFT 197 (225)
T ss_dssp --TEEEEEETTTT--EEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT--------EEEEEECC
T ss_pred --CeEEEEECCCC--eecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC--------EEEEEeCC
Confidence 46899997766 4332 111 100 012333344443 45699999773 47899954
No 297
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=58.17 E-value=12 Score=35.09 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=37.7
Q ss_pred CCCcccCCCC-ccccccCcccc-hhhHHHHHhhccCChhhhhhHHHhhHHHHHhcC
Q 042793 118 NRTFPIGDRN-VCREVCGIFQL-SDEVISLKILSWLSPRDIASVGSVCRRFYELTK 171 (545)
Q Consensus 118 ~~~~~~g~~~-~~~~~~~~~~l-p~~~~~~~~~~~l~~~~~~~~~~vcr~~~~l~~ 171 (545)
.+.+.+|... ++++...++|+ |+|+++..++.++.++|...+. +.+..++.
T Consensus 180 trh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~---~~~~~~l~ 232 (320)
T 4dj2_A 180 TRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLML---AIHKKILQ 232 (320)
T ss_dssp EEECTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHH---HHHHHHTT
T ss_pred EEecCCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHH---HHHHHHHh
Confidence 3445666664 88999999998 9999998899999999876443 33444443
No 298
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=54.95 E-value=86 Score=28.34 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=35.3
Q ss_pred CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEec---CCEEEEEcCcC
Q 042793 398 GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLP---GGRILIFGGSV 474 (545)
Q Consensus 398 ~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~---~~~l~v~GG~~ 474 (545)
++.+++.|+.+ ..+..||+.+....++.+... ......-.++... ++.+++.|+.+
T Consensus 22 ~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~d~~~l~s~~~d 80 (351)
T 3f3f_A 22 YGRHVATCSSD---------QHIKVFKLDKDTSNWELSDSW------------RAHDSSIVAIDWASPEYGRIIASASYD 80 (351)
T ss_dssp SSSEEEEEETT---------SEEEEEEECSSSCCEEEEEEE------------ECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CCCEEEEeeCC---------CeEEEEECCCCCCcceeccee------------ccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence 33566666642 456667766434455554433 1111222344443 36788888754
Q ss_pred CCCCCCCceEEEcCCC
Q 042793 475 AGLHSATQLYLLDPTE 490 (545)
Q Consensus 475 ~~~~~~~~v~~~d~~~ 490 (545)
..+.+||+.+
T Consensus 81 ------g~v~vwd~~~ 90 (351)
T 3f3f_A 81 ------KTVKLWEEDP 90 (351)
T ss_dssp ------SCEEEEEECT
T ss_pred ------CeEEEEecCC
Confidence 4577888753
No 299
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=54.45 E-value=1.7e+02 Score=28.83 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=34.2
Q ss_pred CCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEe
Q 042793 345 GTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMD 424 (545)
Q Consensus 345 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d 424 (545)
++++|+|-|. ..|.||... .+...-.-..+| .. -++....+ ++|+|-| +..|+||
T Consensus 158 ~~~~yfFkG~--------~yw~yd~~~--~~~~~~~w~gi~--~i-DAA~~~~g-~~YfFkG-----------~~y~rfd 212 (460)
T 1qhu_A 158 DEGILFFQGN--------RKWFWDLTT--GTKKERSWPAVG--NC-TSALRWLG-RYYCFQG-----------NQFLRFN 212 (460)
T ss_dssp SSEEEEEETT--------EEEEEETTT--TEEEEECCTTSC--CC-SEEEEETT-EEEEEET-----------TEEEEEC
T ss_pred CCeEEEEecc--------cEEEEeccc--ceeecccCCCCC--cc-chheeeCC-ceEEEEC-----------CEEEEEc
Confidence 5688988772 479999543 333321112233 23 34444555 9999977 6788888
Q ss_pred CC
Q 042793 425 LS 426 (545)
Q Consensus 425 ~~ 426 (545)
..
T Consensus 213 ~~ 214 (460)
T 1qhu_A 213 PV 214 (460)
T ss_dssp TT
T ss_pred Cc
Confidence 75
No 300
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=54.42 E-value=1.5e+02 Score=28.25 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=32.8
Q ss_pred CEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeC
Q 042793 346 TKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDL 425 (545)
Q Consensus 346 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~ 425 (545)
+.+++.|+.+ ..+.++|+....... .+.. .+....-.+++...++.+++.|+.+ ..+..||+
T Consensus 182 ~~~l~~~~~d------~~i~iwd~~~~~~~~-~~~~--~~h~~~v~~~~~s~~~~~l~s~~~d---------g~i~iwd~ 243 (437)
T 3gre_A 182 KSLLVALTNL------SRVIIFDIRTLERLQ-IIEN--SPRHGAVSSICIDEECCVLILGTTR---------GIIDIWDI 243 (437)
T ss_dssp CEEEEEEETT------SEEEEEETTTCCEEE-EEEC--CGGGCCEEEEEECTTSCEEEEEETT---------SCEEEEET
T ss_pred CCEEEEEeCC------CeEEEEeCCCCeeeE-EEcc--CCCCCceEEEEECCCCCEEEEEcCC---------CeEEEEEc
Confidence 4666666642 358899976432222 2221 1111122233333344677777652 56888898
Q ss_pred C
Q 042793 426 S 426 (545)
Q Consensus 426 ~ 426 (545)
.
T Consensus 244 ~ 244 (437)
T 3gre_A 244 R 244 (437)
T ss_dssp T
T ss_pred C
Confidence 7
No 301
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=54.09 E-value=1.2e+02 Score=27.00 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=13.0
Q ss_pred CCEEEEEcCcCCCCCCCCceEEEcCCC
Q 042793 464 GGRILIFGGSVAGLHSATQLYLLDPTE 490 (545)
Q Consensus 464 ~~~l~v~GG~~~~~~~~~~v~~~d~~~ 490 (545)
+++ ++.|+.+ +.+.+||+.+
T Consensus 236 ~~~-l~~~~~d------g~v~iwd~~~ 255 (313)
T 3odt_A 236 NGD-IVSCGED------RTVRIWSKEN 255 (313)
T ss_dssp TSC-EEEEETT------SEEEEECTTT
T ss_pred CCC-EEEEecC------CEEEEEECCC
Confidence 444 5566643 5699999863
No 302
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=53.46 E-value=18 Score=33.73 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=33.9
Q ss_pred CCcccCCCC-ccccccCcccc-hhhHHHHHhhccCChhhhhhHHH
Q 042793 119 RTFPIGDRN-VCREVCGIFQL-SDEVISLKILSWLSPRDIASVGS 161 (545)
Q Consensus 119 ~~~~~g~~~-~~~~~~~~~~l-p~~~~~~~~~~~l~~~~~~~~~~ 161 (545)
+.+.+|... ++++...++|+ |+|+++..++.++.++|+..+..
T Consensus 170 rh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~ 214 (309)
T 3gdi_A 170 THTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLA 214 (309)
T ss_dssp EECTTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHH
T ss_pred EecCCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHH
Confidence 344566664 78899999998 99999988999999998765443
No 303
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=52.61 E-value=2.1e+02 Score=29.51 Aligned_cols=20 Identities=10% Similarity=0.282 Sum_probs=12.8
Q ss_pred EEEEEcCCCCCcccCcEEEEecCCC
Q 042793 295 HLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 295 ~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
.+++.|+.+ ..+.++|+.+.
T Consensus 396 ~~l~s~s~D-----~~i~~W~~~~~ 415 (694)
T 3dm0_A 396 DIIVSASRD-----KSIILWKLTKD 415 (694)
T ss_dssp SEEEEEETT-----SEEEEEECCCS
T ss_pred CEEEEEeCC-----CcEEEEEccCC
Confidence 566777654 35777777654
No 304
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=52.35 E-value=1.1e+02 Score=26.03 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=73.8
Q ss_pred EEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceE--eccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcE
Q 042793 288 LSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWR--EISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDT 364 (545)
Q Consensus 288 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~--~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 364 (545)
++.+ ++++|+|=| +.+|.++......... .|...-+..|..-.++... .++++|+|-|. ..
T Consensus 12 i~~~-~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~IDAa~~~~~~~~~yfFkG~--------~y 75 (195)
T 1itv_A 12 IAEI-GNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRKLDSVFEEPLSKKLFFFSGR--------QV 75 (195)
T ss_dssp EEEE-TTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSSCSEEEECTTTCCEEEEETT--------EE
T ss_pred EEEe-CCEEEEEEC-------CEEEEEECCccccCCCcEEhhhccCCCCCCccEEEEECCCCeEEEEeCC--------EE
Confidence 3445 458999976 3467776543100121 1211000111222233333 24589999773 46
Q ss_pred EEEecCCCCCc-eEEecCCCCCCC--CCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCC
Q 042793 365 FLLDLSMEKPV-WREIPVTWTPPS--RLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMP 441 (545)
Q Consensus 365 ~~~d~~~~~~~-W~~~~~~~~p~~--r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~ 441 (545)
|+|+- .+.. =..+..-++|.. ...+++. ..++++|+|-| +..|+||.. +.+ +... -|
T Consensus 76 w~~~~--~~~~~Pk~i~~~G~p~~~~~iDAA~~-~~~g~~yfFkg-----------~~ywr~d~~--~~~---~~~g-yP 135 (195)
T 1itv_A 76 WVYTG--ASVLGPRRLDKLGLGADVAQVTGALR-SGRGKMLLFSG-----------RRLWRFDVK--AQM---VDPR-SA 135 (195)
T ss_dssp EEEET--TEEEEEEEGGGGTCCTTCCCCCEEEE-CSTTEEEEEET-----------TEEEEEETT--TTE---ECGG-GC
T ss_pred EEEcC--CccCCCEEeeecccCCCccceeEEEE-cCCCeEEEEeC-----------CEEEEEeCC--ccc---ccCC-Cc
Confidence 88872 2111 111221123431 3333333 44459999966 678999976 321 1110 00
Q ss_pred CCCC-CCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 442 GAGN-PGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 442 ~~~~-~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
.... .-...| ..-.+++.. ++.+|+|-| +..|.||..
T Consensus 136 r~i~~~w~Gvp--~~idaa~~~-~g~~Yffkg--------~~y~~~~~~ 173 (195)
T 1itv_A 136 SEVDRMFPGVP--LDTHDVFQF-REKAYFCQD--------RFYWRVSSR 173 (195)
T ss_dssp EEHHHHSTTSC--SSCSEEEEE-TTEEEEEET--------TEEEEEECC
T ss_pred cChhhcCCCCC--CCCCEEEEe-CCeEEEEeC--------CEEEEEECC
Confidence 0000 000012 223345555 689999977 468899985
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=50.62 E-value=2.4e+02 Score=29.48 Aligned_cols=197 Identities=8% Similarity=-0.013 Sum_probs=92.4
Q ss_pred eeeEEE--CCEEEEEcCCCCCCCccCceEEEeCCCCCC--ceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCccc
Q 042793 234 FSACAV--GNRVVLFGGEGVNMQPMNDTFVLDLNSSNP--EWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLL 308 (545)
Q Consensus 234 ~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~--~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~ 308 (545)
+++++. ++.||+.--. ...|+++++.+... .-..+....+..| ..+++- .+++||+.-. ..
T Consensus 409 ~gla~d~~~~~Ly~sD~~------~~~I~~~~~~g~~~~~~~~~~i~~~~~~P---~glavD~~~g~LY~tD~-----~~ 474 (699)
T 1n7d_A 409 VALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDS-----VL 474 (699)
T ss_dssp CCCEEETTTTEEEECCTT------TTSBEEEESCCCCC-CCCCCBCCSCC--C---CCEECCCSSSBCEECCT-----TT
T ss_pred EEEccccccCeEEEEecC------CCeEEEEecCCCCCCcceEEEEeCCCCCc---ceEEEEeeCCcEEEEec-----cC
Confidence 344443 5678876321 23788888875100 1111111112222 223321 3457888632 23
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCCCccceEEEE--cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCC
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL--DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPP 386 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~ 386 (545)
+.++++++... .-..+.......|+. +++ .++.||+..-. ....+++++++.. .-..+....+..
T Consensus 475 ~~I~v~d~dg~--~~~~l~~~~~~~P~g----iavDp~~g~ly~td~~-----~~~~I~~~~~dG~--~~~~l~~~~l~~ 541 (699)
T 1n7d_A 475 GTVSVADTKGV--KRKTLFREQGSKPRA----IVVDPVHGFMYWTDWG-----TPAKIKKGGLNGV--DIYSLVTENIQW 541 (699)
T ss_dssp SCEEEEBSSSC--CEEEECCCSSCCCCC----EECCSSSSCCEECCCS-----SSCCEEBCCSSSC--CCCEESCSSCSS
T ss_pred CeEEEEecCCC--ceEEEEeCCCCCcce----EEEccCCCcEEEcccC-----CCCeEEEEeCCCC--CeeEEEeCCCCC
Confidence 56899998865 333332211122332 233 24578875311 1245788876432 222222111211
Q ss_pred CCCCcEEEEE-CCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCC
Q 042793 387 SRLGHTLSVY-GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGG 465 (545)
Q Consensus 387 ~r~~~~~~~~-~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~ 465 (545)
| .++++- .+++||+.-.. ...|+++++. ...-+.+... .+..+.| .++.+.++
T Consensus 542 P---nGlavd~~~~~LY~aD~~---------~~~I~~~d~d--G~~~~~~~~~--------~~~~~~P----~glavd~~ 595 (699)
T 1n7d_A 542 P---NGITLDLLSGRLYWVDSK---------LHSISSIDVN--GGNRKTILED--------EKRLAHP----FSLAVFED 595 (699)
T ss_dssp C---CCEEECTTTCCEEEEETT---------TTEEEEECSS--SSCCEEECCC--------SSSCSSC----CCCEEETT
T ss_pred c---cEEEEeccCCEEEEEecC---------CCeEEEEccC--CCceEEEEec--------CCcCCCc----eEeEEECC
Confidence 1 233332 34589987643 4678999987 3333333211 0111222 23333467
Q ss_pred EEEEEcCcCCCCCCCCceEEEcCC
Q 042793 466 RILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 466 ~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
.||+.-. ..+.|.++|+.
T Consensus 596 ~lywtd~------~~~~V~~~d~~ 613 (699)
T 1n7d_A 596 KVFWTDI------INEAIFSANRL 613 (699)
T ss_dssp EEEEECS------TTTCEEEEETT
T ss_pred EEEEEeC------CCCeEEEEEcc
Confidence 8888743 23568888864
No 306
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=50.38 E-value=1.7e+02 Score=27.72 Aligned_cols=111 Identities=10% Similarity=0.061 Sum_probs=55.1
Q ss_pred CCEEEEEcCCCCCCCccCcEEEEecCCCCCce-EEecCCCCCCC--CCCcEEEEECCcEEEEEcccCCCCCCccccCcEE
Q 042793 345 GTKLIVSGGCADSGVLLSDTFLLDLSMEKPVW-REIPVTWTPPS--RLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVF 421 (545)
Q Consensus 345 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W-~~~~~~~~p~~--r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~ 421 (545)
++++|+|-|. ..|+|+-......+ ..+..-++|.. ....+...-.++++|+|-| +..|
T Consensus 236 ~g~~~fFkg~--------~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG-----------~~yw 296 (365)
T 3ba0_A 236 RNQVFLFKDD--------KYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD-----------NQYW 296 (365)
T ss_dssp GTEEEEEETT--------EEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET-----------TEEE
T ss_pred CCEEEEEeCC--------EEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC-----------CEEE
Confidence 4589998763 36777621111111 22322124432 2333332223459999966 6789
Q ss_pred EEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 422 TMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 422 ~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
+||.. +.+ +.. +-|.... .+-+..+..-.+++...++++|+|=| +..|.||..
T Consensus 297 ~yd~~--~~~---v~~-gyPk~I~-~~f~g~p~~iDaA~~~~~g~~YfFkg--------~~ywr~d~~ 349 (365)
T 3ba0_A 297 RYDER--RQM---MDP-GYPKLIT-KNFQGIGPKIDAVFYSKNKYYYFFQG--------SNQFEYDFL 349 (365)
T ss_dssp EEETT--TTE---ECS-SCCCCHH-HHSTTCCSSCSEEEEETTTEEEEEET--------TEEEEEETT
T ss_pred EEeCC--cce---ecC-CCCcchh-hcCCCCCCccceeeEecCCcEEEEeC--------CEEEEEECC
Confidence 99976 321 211 1000000 00011122233455554789999977 568999985
No 307
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=50.18 E-value=1.9e+02 Score=29.26 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=21.1
Q ss_pred CEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEe
Q 042793 465 GRILIFGGSVAGLHSATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 465 ~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~ 498 (545)
..+.|||+.-........+|++|+++....|+.-
T Consensus 207 ~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~ 240 (570)
T 3hx6_A 207 KWAVVTGNGYSSMNDKAALLIIDMETGAITRKLE 240 (570)
T ss_dssp SEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEE
T ss_pred CEEEEEccccCCCCCccEEEEEECCCCceEEEEe
Confidence 4466776643223334689999998665566543
No 308
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=49.65 E-value=1.9 Score=33.23 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=31.5
Q ss_pred Hhhhhhhhhccccc-----CCCcccCCC-CccccccCcccc-hhhHHHHHh
Q 042793 104 FLKSSERQRSFFSG-----NRTFPIGDR-NVCREVCGIFQL-SDEVISLKI 147 (545)
Q Consensus 104 ~~~~~~r~~~~~~~-----~~~~~~g~~-~~~~~~~~~~~l-p~~~~~~~~ 147 (545)
+.+++++++.++++ +..+++|.. .+|++.+.+.|+ ++|+++..+
T Consensus 6 l~~se~~~~~l~e~~~d~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~ 56 (117)
T 2r78_A 6 LYFQSNAYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDW 56 (117)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBT
T ss_pred HHHhHHHHHHHHhcCCceEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCH
Confidence 34566778777764 455667766 489999999999 778876433
No 309
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=49.64 E-value=9.9 Score=28.26 Aligned_cols=68 Identities=13% Similarity=0.346 Sum_probs=37.4
Q ss_pred ccchhhHHHHHhhccCChhhhhhHHHhhHHHHHhcCChhhHHHHhhhcccCCceeceeccCCccccccchhhhhhhhcc
Q 042793 136 FQLSDEVISLKILSWLSPRDIASVGSVCRRFYELTKNEDLWRMVCQNAWGSETTRVLETVPGAKRLGWGRLARELTTLE 214 (545)
Q Consensus 136 ~~lp~~~~~~~~~~~l~~~~~~~~~~vcr~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 214 (545)
.|.|.+++ ..||...+++++..+-..|.. -+-.+.++|+..|...+... .....-.|..+|....+-.
T Consensus 11 ~~~Py~lL-~PVLek~tp~QL~~IE~~nP~--L~~dTdeLWk~~c~rdF~~~--------~p~e~esWRelY~rl~~er 78 (97)
T 4hfx_A 11 MGVPYSVL-EPVLERCTPDQLYRIEEYNHV--LIEETDQLWKVHCHRDFKEE--------RPEEYESWREMYLRLQDAR 78 (97)
T ss_dssp ----------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCS--------CCCSSSCHHHHHHHHHHHH
T ss_pred cCCcHHHH-HHHHccCCHHHHHHHHHhCcc--cchhhHHHHHHHHHhHCccc--------CCCCCCCHHHHHHHHHHHH
Confidence 57799999 489999999999988888762 24568899999998866432 1255668988877655433
No 310
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=49.43 E-value=1.8e+02 Score=27.67 Aligned_cols=19 Identities=5% Similarity=0.111 Sum_probs=14.5
Q ss_pred CCcEEEEECCcEEEEEccc
Q 042793 389 LGHTLSVYGGRKILMFGGL 407 (545)
Q Consensus 389 ~~~~~~~~~~~~lyi~GG~ 407 (545)
..|+++...++.+|.+|-.
T Consensus 274 ~~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 274 SQFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp TTEEEEEETTSCEEEEECC
T ss_pred CCEEEEEeCCCeEEEEeCC
Confidence 4577777777799999864
No 311
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=49.34 E-value=1.4e+02 Score=26.55 Aligned_cols=191 Identities=13% Similarity=0.024 Sum_probs=91.5
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKP 320 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 320 (545)
+.||+.+..+ ..+++||+.+. .+.+.. +.. .-.+++.-.++++|+.... ...+.+||+.+.
T Consensus 40 ~~l~~~~~~~------~~i~~~~~~~~---~~~~~~---~~~-~~~~l~~~~dg~l~v~~~~-----~~~i~~~d~~~g- 100 (296)
T 3e5z_A 40 SAVIFSDVRQ------NRTWAWSDDGQ---LSPEMH---PSH-HQNGHCLNKQGHLIACSHG-----LRRLERQREPGG- 100 (296)
T ss_dssp TEEEEEEGGG------TEEEEEETTSC---EEEEES---SCS-SEEEEEECTTCCEEEEETT-----TTEEEEECSTTC-
T ss_pred CEEEEEeCCC------CEEEEEECCCC---eEEEEC---CCC-CcceeeECCCCcEEEEecC-----CCeEEEEcCCCC-
Confidence 4588877532 27899998763 333321 111 1133333334467776431 146899999887
Q ss_pred CceEeccCCCCCCC-CccceEEEEcCCEEEEE----cCCC-------CCCCccCcEEEEecCCCCCceEEecCCCCCCCC
Q 042793 321 PTWREISGLAPPLP-RSWHSSCTLDGTKLIVS----GGCA-------DSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSR 388 (545)
Q Consensus 321 ~~W~~~~~~~~~~~-r~~~~~~~~~~~~iyv~----GG~~-------~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 388 (545)
+...+.......+ ......+.-.++.+|+. |... ........++.++.. .+...+... ..
T Consensus 101 -~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~~~~~~-~~--- 172 (296)
T 3e5z_A 101 -EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD---GTLSAPIRD-RV--- 172 (296)
T ss_dssp -CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT---SCEEEEECC-CS---
T ss_pred -cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC---CCEEEeecC-CC---
Confidence 6665432100111 11112223334578886 3210 001112468888843 244444321 11
Q ss_pred CCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCce---EEeecCCCCCCCCCCCCCCCCCcceEEEEecCC
Q 042793 389 LGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCW---RCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGG 465 (545)
Q Consensus 389 ~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W---~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~ 465 (545)
...+++...++++++.+.. ...+++|++.. +.+. ..+-.. ....|. ....-.++
T Consensus 173 ~~~gi~~s~dg~~lv~~~~---------~~~i~~~~~~~-~g~~~~~~~~~~~----------~~~~p~---~i~~d~~G 229 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTG---------DNATHRYCLNA-RGETEYQGVHFTV----------EPGKTD---GLRVDAGG 229 (296)
T ss_dssp SEEEEEECTTSCEEEEETT---------TTEEEEEEECS-SSCEEEEEEEECC----------SSSCCC---SEEEBTTS
T ss_pred CCccEEECCCCCEEEEeCC---------CCeEEEEEECC-CCcCcCCCeEeeC----------CCCCCC---eEEECCCC
Confidence 1133444334455544332 36788888752 2334 222111 001111 12333477
Q ss_pred EEEEEcCcCCCCCCCCceEEEcCC
Q 042793 466 RILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 466 ~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
+|||..+ +.|.+||++
T Consensus 230 ~l~v~~~--------~~v~~~~~~ 245 (296)
T 3e5z_A 230 LIWASAG--------DGVHVLTPD 245 (296)
T ss_dssp CEEEEET--------TEEEEECTT
T ss_pred CEEEEcC--------CeEEEECCC
Confidence 8888752 469999996
No 312
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=48.49 E-value=1.6e+02 Score=26.93 Aligned_cols=147 Identities=11% Similarity=0.099 Sum_probs=72.4
Q ss_pred CEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCC
Q 042793 241 NRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKP 320 (545)
Q Consensus 241 ~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 320 (545)
+.+|+.+-.. ..+++||+.+. +.+.+. .+. .-.+++...++++++... +.+++||+.+.
T Consensus 61 ~~l~~~d~~~------~~i~~~d~~~~--~~~~~~---~~~--~v~~i~~~~dg~l~v~~~-------~gl~~~d~~~g- 119 (326)
T 2ghs_A 61 GTAWWFNILE------RELHELHLASG--RKTVHA---LPF--MGSALAKISDSKQLIASD-------DGLFLRDTATG- 119 (326)
T ss_dssp TEEEEEEGGG------TEEEEEETTTT--EEEEEE---CSS--CEEEEEEEETTEEEEEET-------TEEEEEETTTC-
T ss_pred CEEEEEECCC------CEEEEEECCCC--cEEEEE---CCC--cceEEEEeCCCeEEEEEC-------CCEEEEECCCC-
Confidence 6788876432 37999999876 554433 121 122333334457777541 34899999888
Q ss_pred CceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEEC-C
Q 042793 321 PTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYG-G 398 (545)
Q Consensus 321 ~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~ 398 (545)
+.+.+.......+........+ .++++|+.............++.++ .. +...+... .. ....++... +
T Consensus 120 -~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g--~~~~~~~~-~~---~~~~i~~s~dg 190 (326)
T 2ghs_A 120 -VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG--KVTKLFAD-IS---IPNSICFSPDG 190 (326)
T ss_dssp -CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT--EEEEEEEE-ES---SEEEEEECTTS
T ss_pred -cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC--cEEEeeCC-Cc---ccCCeEEcCCC
Confidence 7766543211111111112222 2346776421111111234678887 22 44443211 10 112333332 3
Q ss_pred cEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 399 RKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 399 ~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
+.+|+.... ...|++||..
T Consensus 191 ~~lyv~~~~---------~~~I~~~d~~ 209 (326)
T 2ghs_A 191 TTGYFVDTK---------VNRLMRVPLD 209 (326)
T ss_dssp CEEEEEETT---------TCEEEEEEBC
T ss_pred CEEEEEECC---------CCEEEEEEcc
Confidence 367776432 3678899874
No 313
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=47.55 E-value=1.7e+02 Score=26.82 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=37.7
Q ss_pred cEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCC
Q 042793 399 RKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLH 478 (545)
Q Consensus 399 ~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 478 (545)
+.+|+++.. ...|++||+. +.+..... . +. .-.+.....+++++|...
T Consensus 61 ~~l~~~d~~---------~~~i~~~d~~--~~~~~~~~-~------------~~--~v~~i~~~~dg~l~v~~~------ 108 (326)
T 2ghs_A 61 GTAWWFNIL---------ERELHELHLA--SGRKTVHA-L------------PF--MGSALAKISDSKQLIASD------ 108 (326)
T ss_dssp TEEEEEEGG---------GTEEEEEETT--TTEEEEEE-C------------SS--CEEEEEEEETTEEEEEET------
T ss_pred CEEEEEECC---------CCEEEEEECC--CCcEEEEE-C------------CC--cceEEEEeCCCeEEEEEC------
Confidence 478887643 3679999998 55544432 1 11 112222334788877532
Q ss_pred CCCceEEEcCCCCCCceEEec
Q 042793 479 SATQLYLLDPTEEKPTWRILN 499 (545)
Q Consensus 479 ~~~~v~~~d~~~~~~~W~~~~ 499 (545)
..++.||++ +.+.+.+.
T Consensus 109 --~gl~~~d~~--~g~~~~~~ 125 (326)
T 2ghs_A 109 --DGLFLRDTA--TGVLTLHA 125 (326)
T ss_dssp --TEEEEEETT--TCCEEEEE
T ss_pred --CCEEEEECC--CCcEEEEe
Confidence 349999986 45565553
No 314
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=46.99 E-value=1.7e+02 Score=26.77 Aligned_cols=105 Identities=9% Similarity=0.022 Sum_probs=52.0
Q ss_pred CEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCC
Q 042793 294 SHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEK 373 (545)
Q Consensus 294 ~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 373 (545)
+..++.|+.+ ..+.+||+.+. .-..+... .....-.+.+...++.+++.|+.+ ..+.+||+....
T Consensus 139 ~~~l~s~s~d-----g~i~~wd~~~~--~~~~~~~~--~~~~~i~~~~~~pdg~~lasg~~d------g~i~iwd~~~~~ 203 (343)
T 3lrv_A 139 TEYFIWADNR-----GTIGFQSYEDD--SQYIVHSA--KSDVEYSSGVLHKDSLLLALYSPD------GILDVYNLSSPD 203 (343)
T ss_dssp CCEEEEEETT-----CCEEEEESSSS--CEEEEECC--CSSCCCCEEEECTTSCEEEEECTT------SCEEEEESSCTT
T ss_pred CCEEEEEeCC-----CcEEEEECCCC--cEEEEEec--CCCCceEEEEECCCCCEEEEEcCC------CEEEEEECCCCC
Confidence 3566667754 35889999887 43322211 111112222333345677777753 358899976442
Q ss_pred CceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 374 PVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 374 ~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
..-..+.. .....-.+++...++..++.|+. +.+..+|+.
T Consensus 204 ~~~~~~~~---~h~~~v~~l~fs~~g~~l~s~~~----------~~v~iwd~~ 243 (343)
T 3lrv_A 204 QASSRFPV---DEEAKIKEVKFADNGYWMVVECD----------QTVVCFDLR 243 (343)
T ss_dssp SCCEECCC---CTTSCEEEEEECTTSSEEEEEES----------SBEEEEETT
T ss_pred CCccEEec---cCCCCEEEEEEeCCCCEEEEEeC----------CeEEEEEcC
Confidence 22122221 01111123333334456666652 367788887
No 315
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=46.38 E-value=2.4e+02 Score=29.08 Aligned_cols=156 Identities=12% Similarity=0.176 Sum_probs=72.7
Q ss_pred eeEEECCEEEEEcCCCCCCCccCceEEEeCCCCCCce-EEecc--CCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcE
Q 042793 235 SACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEW-QHVHV--SSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDV 311 (545)
Q Consensus 235 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W-~~~~~--~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 311 (545)
+++...+++|+|-|. .+|+++........ ..+.. ..+|. ....+.....++++|+|-| +..
T Consensus 448 Ait~~rg~~yfFKg~--------~yWr~~~~~~~~~~P~~Is~~wp~LP~-~IDAA~~~~~~~k~yFFkG-------~~y 511 (631)
T 1ck7_A 448 GIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG-------NEY 511 (631)
T ss_dssp EEEECSSSEEEECSS--------EEEEESCTTSCCEEEEEGGGTCTTSCS-SCSBCCEETTTTEEEEEET-------TEE
T ss_pred eeEecCCcEEEEcCC--------EEEEEcCCCCCCCCceeccccCCCCCc-cceEEEEECCCCEEEEEec-------CEE
Confidence 445568899999873 67777754320011 11110 12232 2222222223468999976 457
Q ss_pred EEEecCCCCCce-EeccCCCCCC--CCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCC--c-eEEecCCCC
Q 042793 312 FVLDLDAKPPTW-REISGLAPPL--PRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKP--V-WREIPVTWT 384 (545)
Q Consensus 312 ~~yd~~t~~~~W-~~~~~~~~~~--~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~--~-W~~~~~~~~ 384 (545)
|+|+-.+-..-+ +.|.....|. .+. .++... .++++|+|-|. ..|+||...... . =+.+....+
T Consensus 512 Wry~~~~l~~GYPk~Is~~G~P~~~~~I-DAAf~~~~~gktYFFkG~--------~ywryd~~~~~vd~gYPk~i~~~w~ 582 (631)
T 1ck7_A 512 WIYSASTLERGYPKPLTSLGLPPDVQRV-DAAFNWSKNKKTYIFAGD--------KFWRYNEVKKKMDPGFPKLIADAWN 582 (631)
T ss_dssp EEEETTEECTTCCEEGGGGTCCTTCCCC-CBCCCCTTTCEEEEEETT--------EEEEEETTTTEECTTCCEETTTSCS
T ss_pred EEECCCccccCCCccchhcCCCCCCCcc-eeEEEecCCCeEEEEECC--------EEEEEcCCcccccCCCCcchHhhcC
Confidence 888753210011 1222211121 122 222221 35689999773 478998432100 0 011221111
Q ss_pred CCCCCCcEEEEEC-CcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 385 PPSRLGHTLSVYG-GRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 385 p~~r~~~~~~~~~-~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
..+..-.++.... ++++|+|-| +..|+||..
T Consensus 583 G~p~~iDAAf~~~~~g~~YFFkG-----------~~Ywr~d~~ 614 (631)
T 1ck7_A 583 AIPDNLDAVVDLQGGGHSYFFKG-----------AYYLKLENQ 614 (631)
T ss_dssp SCCTTCCEEECCTTSCBCEEEET-----------TEEECCBTT
T ss_pred CCCCCCcEeEEEcCCCeEEEEEC-----------CEEEEEeCc
Confidence 1122223333333 358888866 567778765
No 316
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=44.72 E-value=2.7e+02 Score=28.31 Aligned_cols=58 Identities=9% Similarity=-0.018 Sum_probs=29.7
Q ss_pred CCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEee
Q 042793 371 MEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVT 436 (545)
Q Consensus 371 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~ 436 (545)
....+|+.... .+......+++...+++|+++....... .....+-......+|+.+.
T Consensus 197 D~G~TW~~~~~--~~~~~~~~~v~~~~dG~l~~~~r~~~~~------~~~~~~~S~DgG~tW~~~~ 254 (601)
T 1w8o_A 197 DHGRTWRAGEA--VGVGMDENKTVELSDGRVLLNSRDSARS------GYRKVAVSTDGGHSYGPVT 254 (601)
T ss_dssp STTSSCEECCC--BCSSCCSEEEEECTTSCEEEEECCTTCC------SEEEEEEESSTTSCCCCCE
T ss_pred CCCcCccCCCC--CCCCCCcCEEEEeCCCEEEEEEeCCCCC------CCEEEEEEcCCCCCCCCCe
Confidence 34679998754 2222233445555656888865332111 2233333332356898764
No 317
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=44.70 E-value=1.8e+02 Score=26.41 Aligned_cols=211 Identities=8% Similarity=-0.070 Sum_probs=96.2
Q ss_pred eeEEEEc-CCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCC-CccceEEEEc-CCEEEEEcCCCCC-----
Q 042793 286 HTLSCVN-GSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLP-RSWHSSCTLD-GTKLIVSGGCADS----- 357 (545)
Q Consensus 286 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~-r~~~~~~~~~-~~~iyv~GG~~~~----- 357 (545)
+.++.-. ++.|||.-.. ..+.+||+.+. ..+.+.......+ ......+.-. ++.+|+.-.....
T Consensus 83 ~gi~~~~~~g~l~v~d~~------~~i~~~d~~~g--~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCY------YHLSVVGSEGG--HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV 154 (322)
T ss_dssp EEEEEETTTTEEEEEETT------TEEEEECTTCE--ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred ceEEEcCCCCcEEEEECC------CCEEEEeCCCC--EEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccc
Confidence 3444332 5689987321 24788998876 5554432100011 1112222323 4578886321100
Q ss_pred ------CCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECC-cEEEEEcccCCCCCCccccCcEEEEeCCCCC-
Q 042793 358 ------GVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGG-RKILMFGGLAKSGPLRFRSSDVFTMDLSEEE- 429 (545)
Q Consensus 358 ------~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~-~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~- 429 (545)
......+++||.. +.+...+... .. ....++.-.+ +.||+.... ...|++|++....
T Consensus 155 ~~~~~~~~~~g~v~~~d~~--~~~~~~~~~~-~~---~p~gia~~~dg~~lyv~d~~---------~~~I~~~~~~~~~~ 219 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKYDPS--TKETTLLLKE-LH---VPGGAEVSADSSFVLVAEFL---------SHQIVKYWLEGPKK 219 (322)
T ss_dssp HHHHHHTCCCEEEEEEETT--TTEEEEEEEE-ES---CCCEEEECTTSSEEEEEEGG---------GTEEEEEESSSTTT
T ss_pred ceehcccCCCceEEEEeCC--CCEEEEeccC-Cc---cCcceEECCCCCEEEEEeCC---------CCeEEEEECCCCcC
Confidence 0122458889853 3344433211 11 1123444433 368887432 3679999987311
Q ss_pred CceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCC----CCCCceEEEcCCCCCCceEEeccCCCCC
Q 042793 430 PCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGL----HSATQLYLLDPTEEKPTWRILNVPGRPP 505 (545)
Q Consensus 430 ~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~----~~~~~v~~~d~~~~~~~W~~~~~~~~~p 505 (545)
...+.+... +.| ....+-.+++|||.-...... .....+++||++ ...-..+......+
T Consensus 220 ~~~~~~~~~------------~gP---~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--G~~~~~~~~~~g~~ 282 (322)
T 2fp8_A 220 GTAEVLVKI------------PNP---GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF--GNILEVIPLPPPFA 282 (322)
T ss_dssp TCEEEEEEC------------SSE---EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT--SCEEEEEECCTTTT
T ss_pred CccceEEeC------------CCC---CCeEECCCCCEEEEecCcccccccCCCccEEEEECCC--CCEEEEEECCCCCc
Confidence 233333222 211 112223356788874321000 012468999985 33333443221111
Q ss_pred CCCCCceeEEeCCeeEEEEcCCCCcccccccceeeeecc
Q 042793 506 RFAWGHSTCVVGGTRTIVLGGQTGEEWMLSELHELSLVS 544 (545)
Q Consensus 506 ~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~l~l~~ 544 (545)
. ...+.+...+++|||-+..+ +.|.+|+++.
T Consensus 283 -~-~~~~~~~~~~g~L~v~~~~~------~~i~~~~~~~ 313 (322)
T 2fp8_A 283 -G-EHFEQIQEHDGLLYIGTLFH------GSVGILVYDK 313 (322)
T ss_dssp -T-SCCCEEEEETTEEEEECSSC------SEEEEEEC--
T ss_pred -c-ccceEEEEeCCEEEEeecCC------CceEEEeccc
Confidence 1 12233334478888865322 3467777654
No 318
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=43.33 E-value=2.1e+02 Score=26.72 Aligned_cols=101 Identities=23% Similarity=0.180 Sum_probs=54.0
Q ss_pred cCceEEEeCC---CCCCceEEeccCCCCCC-------ccc--eeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCC-c
Q 042793 256 MNDTFVLDLN---SSNPEWQHVHVSSPPPG-------RWG--HTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPP-T 322 (545)
Q Consensus 256 ~~~~~~~d~~---t~~~~W~~~~~~~~~~~-------r~~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~-~ 322 (545)
.+.+.+||+. +....|..-- ...... ++. --+++-.+..+||.+... +..++.+|++.... .
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL-~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~----~~~I~rV~pdG~~~~~ 173 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNF-EKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG----MPAIARVSADGKTVST 173 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEES-HHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES----SCEEEEECTTSCCEEE
T ss_pred CCEEEEEcCCcCCCCCEEEEecC-ccccccccccccccccCCceeEECCCCCEEEeCCCC----CCeEEEEeCCCCEEee
Confidence 3569999998 6655676311 010000 221 122222234699976532 14589999875421 2
Q ss_pred eEeccCCCCCCCCccceEEEEc--CCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 323 WREISGLAPPLPRSWHSSCTLD--GTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 323 W~~~~~~~~~~~r~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
|-.-.+ ....+.+....++. ++.+++..+ . ..+++||+.
T Consensus 174 ~~~~~~--~~~~~~G~nGIv~~pdg~~Liv~~~-~------g~L~~fD~~ 214 (334)
T 2p9w_A 174 FAWESG--NGGQRPGYSGITFDPHSNKLIAFGG-P------RALTAFDVS 214 (334)
T ss_dssp EEECCC--CSSSCCSCSEEEEETTTTEEEEESS-S------SSEEEEECS
T ss_pred eeecCC--CcccccCcceEEEeCCCCEEEEEcC-C------CeEEEEcCC
Confidence 543221 13345566666654 656777654 2 458999976
No 319
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=42.37 E-value=6.5 Score=30.12 Aligned_cols=39 Identities=15% Similarity=0.056 Sum_probs=31.7
Q ss_pred cccCCCC-ccccccCcccc-hhhHHHHHhhccCChhhhhhH
Q 042793 121 FPIGDRN-VCREVCGIFQL-SDEVISLKILSWLSPRDIASV 159 (545)
Q Consensus 121 ~~~g~~~-~~~~~~~~~~l-p~~~~~~~~~~~l~~~~~~~~ 159 (545)
+.+|... +|++.+.++|+ |+|+++..+..+++|.|...+
T Consensus 16 d~~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~ 56 (111)
T 2vlg_A 16 ASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLV 56 (111)
T ss_dssp CTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHH
T ss_pred cCCCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHH
Confidence 4566553 89999999999 899998888899999887654
No 320
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=42.13 E-value=2.3e+02 Score=26.86 Aligned_cols=142 Identities=10% Similarity=0.010 Sum_probs=66.4
Q ss_pred EEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCC
Q 042793 295 HLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKP 374 (545)
Q Consensus 295 ~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~ 374 (545)
.+++.|+.+ ..+.++|..+. .-...-.. ... .-.+.+...++.+++.|+.+ ..+.++|+...
T Consensus 121 ~~l~s~s~D-----g~i~vwd~~~~--~~~~~l~~--h~~-~V~~v~~~~~~~~l~sgs~D------~~i~iwd~~~~-- 182 (410)
T 1vyh_C 121 SVMVSASED-----ATIKVWDYETG--DFERTLKG--HTD-SVQDISFDHSGKLLASCSAD------MTIKLWDFQGF-- 182 (410)
T ss_dssp SEEEEEESS-----SCEEEEETTTC--CCCEEECC--CSS-CEEEEEECTTSSEEEEEETT------SCCCEEETTSS--
T ss_pred CEEEEEeCC-----CeEEEEECCCC--cEEEEEec--cCC-cEEEEEEcCCCCEEEEEeCC------CeEEEEeCCCC--
Confidence 466666654 35888998877 32211111 111 11112222344677777753 23667775422
Q ss_pred ceEEecCCCCCC-CCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceE-EeecCCCCCCCCCCCCCCC
Q 042793 375 VWREIPVTWTPP-SRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWR-CVTGSGMPGAGNPGGIAPP 452 (545)
Q Consensus 375 ~W~~~~~~~~p~-~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~-~v~~~~~~~~~~~~g~~p~ 452 (545)
..+.. +.. ...-.+++...++..++.|+. ...+..+|+. +..-. .+... .
T Consensus 183 --~~~~~--~~~h~~~V~~v~~~p~~~~l~s~s~---------D~~i~~wd~~--~~~~~~~~~~h-------------~ 234 (410)
T 1vyh_C 183 --ECIRT--MHGHDHNVSSVSIMPNGDHIVSASR---------DKTIKMWEVQ--TGYCVKTFTGH-------------R 234 (410)
T ss_dssp --CEEEC--CCCCSSCEEEEEECSSSSEEEEEET---------TSEEEEEETT--TCCEEEEEECC-------------S
T ss_pred --ceeEE--EcCCCCCEEEEEEeCCCCEEEEEeC---------CCeEEEEECC--CCcEEEEEeCC-------------C
Confidence 22221 111 111123333334356666664 3567788887 43322 22111 1
Q ss_pred CCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 453 PRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 453 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
. .-.......++.+++.|+.+ ..+.+||+.
T Consensus 235 ~-~v~~~~~~~~g~~l~s~s~D------~~v~vwd~~ 264 (410)
T 1vyh_C 235 E-WVRMVRPNQDGTLIASCSND------QTVRVWVVA 264 (410)
T ss_dssp S-CEEEEEECTTSSEEEEEETT------SCEEEEETT
T ss_pred c-cEEEEEECCCCCEEEEEcCC------CeEEEEECC
Confidence 1 11112222356777777754 457777875
No 321
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=41.95 E-value=2.1e+02 Score=26.41 Aligned_cols=137 Identities=15% Similarity=0.111 Sum_probs=64.7
Q ss_pred EEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 347 KLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 347 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
..++.|+.+ ..+..+|+.+. +....-. .....-.+++...++.+++.|+.+ ..+..||+.
T Consensus 211 ~~l~sgs~D------g~v~~wd~~~~--~~~~~~~---~h~~~v~~v~~~p~~~~l~s~s~D---------~~v~lwd~~ 270 (354)
T 2pbi_B 211 NTFVSGGCD------KKAMVWDMRSG--QCVQAFE---THESDVNSVRYYPSGDAFASGSDD---------ATCRLYDLR 270 (354)
T ss_dssp CEEEEEETT------SCEEEEETTTC--CEEEEEC---CCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETT
T ss_pred CEEEEEeCC------CeEEEEECCCC--cEEEEec---CCCCCeEEEEEeCCCCEEEEEeCC---------CeEEEEECC
Confidence 566777653 34888996543 3322211 011111233333344667777652 567788887
Q ss_pred CCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEe-cCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCC
Q 042793 427 EEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSL-PGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPP 505 (545)
Q Consensus 427 ~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p 505 (545)
+..-..+... ........++.. .++++++.|+.+ ..+.+||+.+. ..-..+. ...
T Consensus 271 --~~~~~~~~~~------------~~~~~~~~~~~~s~~g~~l~~g~~d------~~i~vwd~~~~-~~~~~l~---~h~ 326 (354)
T 2pbi_B 271 --ADREVAIYSK------------ESIIFGASSVDFSLSGRLLFAGYND------YTINVWDVLKG-SRVSILF---GHE 326 (354)
T ss_dssp --TTEEEEEECC------------TTCCSCEEEEEECTTSSEEEEEETT------SCEEEEETTTC-SEEEEEC---CCS
T ss_pred --CCcEEEEEcC------------CCcccceeEEEEeCCCCEEEEEECC------CcEEEEECCCC-ceEEEEE---CCC
Confidence 4332222111 111122233333 367777777743 56889998532 1122221 111
Q ss_pred CCCCCceeEEeCCeeEEEEcCCCC
Q 042793 506 RFAWGHSTCVVGGTRTIVLGGQTG 529 (545)
Q Consensus 506 ~~r~~~~~~~~~~~~l~i~GG~~~ 529 (545)
. .-.+.....++..++.|+.++
T Consensus 327 ~--~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 327 N--RVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp S--CEEEEEECTTSSCEEEEETTS
T ss_pred C--cEEEEEECCCCCEEEEEcCCC
Confidence 1 111222334667777777664
No 322
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=41.82 E-value=5.8 Score=30.27 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=32.0
Q ss_pred CCCcccCCCC-ccccccCcccc-hhhHHHHHhhccCChhhhhh
Q 042793 118 NRTFPIGDRN-VCREVCGIFQL-SDEVISLKILSWLSPRDIAS 158 (545)
Q Consensus 118 ~~~~~~g~~~-~~~~~~~~~~l-p~~~~~~~~~~~l~~~~~~~ 158 (545)
+..+++|... +|++.+.++|+ |+|+++..+..+++|.+...
T Consensus 16 ~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~ 58 (121)
T 3f1p_B 16 SRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQL 58 (121)
T ss_dssp EEECTTSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHH
T ss_pred EEECCCceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHH
Confidence 4455666664 89999999999 89988877888888877653
No 323
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=41.67 E-value=3.1e+02 Score=28.23 Aligned_cols=66 Identities=2% Similarity=-0.081 Sum_probs=32.0
Q ss_pred ceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCC----cccCcEEEEecCCCCCceEeccC
Q 042793 258 DTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQ----GLLNDVFVLDLDAKPPTWREISG 328 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~----~~~~~~~~yd~~t~~~~W~~~~~ 328 (545)
.++++|+.+. +-..+..........-.+.+.- +++ .++++..... .....++++|+.+. +-..+..
T Consensus 38 ~i~~~d~~~g--~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~l~~ 108 (723)
T 1xfd_A 38 TVRLWNVETN--TSTVLIEGKKIESLRAIRYEISPDRE-YALFSYNVEPIYQHSYTGYYVLSKIPHG--DPQSLDP 108 (723)
T ss_dssp CEEEBCGGGC--CCEEEECTTTTTTTTCSEEEECTTSS-EEEEEESCCCCSSSCCCSEEEEEESSSC--CCEECCC
T ss_pred CEEEEECCCC--cEEEEeccccccccccceEEECCCCC-EEEEEecCccceeecceeeEEEEECCCC--ceEeccC
Confidence 6888888776 4333321110000011222222 444 4444433221 12468999999988 5455553
No 324
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=41.66 E-value=2.1e+02 Score=26.16 Aligned_cols=150 Identities=12% Similarity=0.082 Sum_probs=70.3
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCC----
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWT---- 384 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~---- 384 (545)
+.++++|+.+. +....... ... ..-+..+.-.++.+|+.... ...+.+||.+.....-..+.....
T Consensus 69 ~~i~~~d~~~g--~~~~~~~~-~~~-~~p~gia~d~~g~l~v~d~~------~~~v~~~~~~g~~~~~~~~~~~~~~g~~ 138 (329)
T 3fvz_A 69 DTILVIDPNNA--EILQSSGK-NLF-YLPHGLSIDTDGNYWVTDVA------LHQVFKLDPHSKEGPLLILGRSMQPGSD 138 (329)
T ss_dssp CCEEEECTTTC--CEEEEECT-TTC-SSEEEEEECTTSCEEEEETT------TTEEEEECTTCSSCCSEEESBTTBCCCS
T ss_pred CcEEEEECCCC--eEEeccCC-Ccc-CCceEEEECCCCCEEEEECC------CCEEEEEeCCCCeEEEEEecccCCCCCC
Confidence 46899999877 43322110 010 11122222234578887643 145888985422112222321000
Q ss_pred CCCC-CCcEEEEEC-CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEe
Q 042793 385 PPSR-LGHTLSVYG-GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSL 462 (545)
Q Consensus 385 p~~r-~~~~~~~~~-~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~ 462 (545)
.... .-..+++.. ++.||+..+.. ...|++||+. ...-..+...+ .. ....+........+++
T Consensus 139 ~~~~~~P~~ia~~~~~g~lyv~d~~~--------~~~I~~~~~~--g~~~~~~~~~g---~~--~~~~~~~~~~p~gia~ 203 (329)
T 3fvz_A 139 QNHFCQPTDVAVEPSTGAVFVSDGYC--------NSRIVQFSPS--GKFVTQWGEES---SG--SSPRPGQFSVPHSLAL 203 (329)
T ss_dssp TTCCSSEEEEEECTTTCCEEEEECSS--------CCEEEEECTT--SCEEEEECEEC---CS--SSCCTTEESCEEEEEE
T ss_pred ccccCCCcEEEEeCCCCeEEEEeCCC--------CCeEEEEcCC--CCEEEEeccCC---CC--CCCCCcccCCCcEEEE
Confidence 1111 112344443 56899987521 3678899965 33333332221 00 0000111112233443
Q ss_pred -cC-CEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 463 -PG-GRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 463 -~~-~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
.+ +.|||.... .+.|.+||++
T Consensus 204 d~~~g~l~v~d~~------~~~I~~~~~~ 226 (329)
T 3fvz_A 204 VPHLDQLCVADRE------NGRIQCFKTD 226 (329)
T ss_dssp ETTTTEEEEEETT------TTEEEEEETT
T ss_pred ECCCCEEEEEECC------CCEEEEEECC
Confidence 34 789998653 3679999986
No 325
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=40.06 E-value=2.6e+02 Score=26.76 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=33.3
Q ss_pred cceEEEEecCCEEEEEcCcCCCCCC---CCceEEEc-CC-CCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcC
Q 042793 455 LDHVAVSLPGGRILIFGGSVAGLHS---ATQLYLLD-PT-EEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGG 526 (545)
Q Consensus 455 ~~~~~~~~~~~~l~v~GG~~~~~~~---~~~v~~~d-~~-~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG 526 (545)
..|+.++..++++|.+|-...+.-- ..+..... +. ........+. .-..|++++..++++|.+|-
T Consensus 234 ~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~-------~G~~hs~alt~~G~v~~wG~ 303 (406)
T 4d9s_A 234 WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQIS-------GGWRHTMALTSDGKLYGWGW 303 (406)
T ss_dssp SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEE-------ECSSEEEEEETTSCEEEEEC
T ss_pred CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEE-------ecCCEEEEEcCCCeEEEeeC
Confidence 4577777778999999853321110 11111100 00 0011122221 12357888877899999994
No 326
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=39.70 E-value=1.9e+02 Score=25.27 Aligned_cols=194 Identities=11% Similarity=-0.015 Sum_probs=100.0
Q ss_pred eeeEEE--CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCc
Q 042793 234 FSACAV--GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLND 310 (545)
Q Consensus 234 ~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~ 310 (545)
++++.. ++.||+.-.. .+.++++|+... .-..+....+..| +.++.- .+++||+.-.. .+.
T Consensus 39 ~gi~~d~~~~~ly~~d~~------~~~I~~~~~~g~--~~~~~~~~~~~~p---~~ia~d~~~~~lyv~d~~-----~~~ 102 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDIS------EPSIGRASLHGG--EPTTIIRQDLGSP---EGIALDHLGRTIFWTDSQ-----LDR 102 (267)
T ss_dssp EEEEEETTTTEEEEEETT------TTEEEEEESSSC--CCEEEECTTCCCE---EEEEEETTTTEEEEEETT-----TTE
T ss_pred EEEEEecCCCEEEEEECC------CCEEEEEecCCC--CcEEEEECCCCCc---cEEEEEecCCeEEEEECC-----CCE
Confidence 344443 5689887532 237999998765 3333321222222 344433 35689987542 256
Q ss_pred EEEEecCCCCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCC
Q 042793 311 VFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRL 389 (545)
Q Consensus 311 ~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~ 389 (545)
++++|++.. .-..+.......| ...+.- .++.+|+..... ..+.+++++++.. .-+.+..... ..
T Consensus 103 I~~~~~~g~--~~~~~~~~~~~~P---~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg~--~~~~~~~~~~---~~ 168 (267)
T 1npe_A 103 IEVAKMDGT--QRRVLFDTGLVNP---RGIVTDPVRGNLYWTDWNR----DNPKIETSHMDGT--NRRILAQDNL---GL 168 (267)
T ss_dssp EEEEETTSC--SCEEEECSSCSSE---EEEEEETTTTEEEEEECCS----SSCEEEEEETTSC--CCEEEECTTC---SC
T ss_pred EEEEEcCCC--CEEEEEECCCCCc---cEEEEeeCCCEEEEEECCC----CCcEEEEEecCCC--CcEEEEECCC---CC
Confidence 899998765 3232222111122 122222 256899975321 1246888886533 2222321111 12
Q ss_pred CcEEEEEC-CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEE
Q 042793 390 GHTLSVYG-GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRIL 468 (545)
Q Consensus 390 ~~~~~~~~-~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~ 468 (545)
-..++.-. ++.||+.... .+.|+++|+. ...-..+... ...| ..+.+.++.||
T Consensus 169 P~gia~d~~~~~lyv~d~~---------~~~I~~~~~~--g~~~~~~~~~-----------~~~P----~gi~~d~~~ly 222 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVDAG---------THRAECLNPA--QPGRRKVLEG-----------LQYP----FAVTSYGKNLY 222 (267)
T ss_dssp EEEEEEETTTTEEEEEETT---------TTEEEEEETT--EEEEEEEEEC-----------CCSE----EEEEEETTEEE
T ss_pred CcEEEEcCCCCEEEEEECC---------CCEEEEEecC--CCceEEEecC-----------CCCc----eEEEEeCCEEE
Confidence 23444432 4589987543 4789999987 3322222111 1112 23344478899
Q ss_pred EEcCcCCCCCCCCceEEEcCC
Q 042793 469 IFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 469 v~GG~~~~~~~~~~v~~~d~~ 489 (545)
+.-.. .+.|+++|++
T Consensus 223 va~~~------~~~v~~~d~~ 237 (267)
T 1npe_A 223 YTDWK------TNSVIAMDLA 237 (267)
T ss_dssp EEETT------TTEEEEEETT
T ss_pred EEECC------CCeEEEEeCC
Confidence 86432 3679999996
No 327
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=39.69 E-value=3e+02 Score=27.50 Aligned_cols=113 Identities=17% Similarity=0.238 Sum_probs=53.5
Q ss_pred EEEEEcCCCCCcccCcEEEEec--CCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCC
Q 042793 295 HLVVFGGCGRQGLLNDVFVLDL--DAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSME 372 (545)
Q Consensus 295 ~iyv~GG~~~~~~~~~~~~yd~--~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 372 (545)
++++.+..........+|..+. ... . ..+... +..+ ..+...+++.+++..+..+ ...+||+.+.
T Consensus 76 ~~l~~~~~~~g~~~~~l~~~~~~~~g~--~-~~l~~~--~~~~--~~~~s~dg~~~~~~s~~~~------~~~l~d~~~g 142 (582)
T 3o4h_A 76 RVILVRDVSKGAEQHALFKVNTSRPGE--E-QRLEAV--KPMR--ILSGVDTGEAVVFTGATED------RVALYALDGG 142 (582)
T ss_dssp EEEEEEECSTTSCCEEEEEEETTSTTC--C-EECTTS--CSBE--EEEEEECSSCEEEEEECSS------CEEEEEEETT
T ss_pred eEEEEeccCCCCcceEEEEEeccCCCc--c-ccccCC--CCce--eeeeCCCCCeEEEEecCCC------CceEEEccCC
Confidence 5555443211112235777777 433 2 233332 1112 3344556666666544322 2346676543
Q ss_pred CCceEEecCCCCCCCCCCcEEEE-ECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEee
Q 042793 373 KPVWREIPVTWTPPSRLGHTLSV-YGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVT 436 (545)
Q Consensus 373 ~~~W~~~~~~~~p~~r~~~~~~~-~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~ 436 (545)
+-..+.. .+. .+.+. -++ +.+++++....+ ...+|.+|+. +.+++.+.
T Consensus 143 --~~~~l~~--~~~----~~~~~spDG-~~la~~~~~~~~-----~~~i~~~d~~--~g~~~~l~ 191 (582)
T 3o4h_A 143 --GLRELAR--LPG----FGFVSDIRG-DLIAGLGFFGGG-----RVSLFTSNLS--SGGLRVFD 191 (582)
T ss_dssp --EEEEEEE--ESS----CEEEEEEET-TEEEEEEEEETT-----EEEEEEEETT--TCCCEEEC
T ss_pred --cEEEeec--CCC----ceEEECCCC-CEEEEEEEcCCC-----CeEEEEEcCC--CCCceEee
Confidence 5555543 121 22222 234 455544433222 2569999988 66677664
No 328
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=39.12 E-value=1.9e+02 Score=25.05 Aligned_cols=148 Identities=16% Similarity=0.287 Sum_probs=71.8
Q ss_pred ECCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEecc--CCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEec
Q 042793 239 VGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHV--SSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDL 316 (545)
Q Consensus 239 ~~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~--~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 316 (545)
..+++|+|=|. ..|+++.......=..+.. .++|. ....+ ... ++++|+|-| +.+|+|+.
T Consensus 27 ~~g~~yfFkg~--------~~Wr~~~~~~~~~p~~Is~~wpgLP~-~IDAA-~~~-~~~~yfFkG-------~~yw~~~~ 88 (219)
T 1hxn_A 27 NHGATYVFSGS--------HYWRLDTNRDGWHSWPIAHQWPQGPS-TVDAA-FSW-EDKLYLIQD-------TKVYVFLT 88 (219)
T ss_dssp TTSCEEEEETT--------EEEESSSSSCTTCCEEGGGTCTTSCS-SCSEE-EEE-TTEEEEEET-------TEEEEEEC
T ss_pred CCCcEEEEeCC--------EEEEEcCCCCCCCceEhhhhccCCCC-CccEE-EEE-CCcEEEecC-------CEEEEEeC
Confidence 47889999773 5677664322001112221 13443 23222 234 569999976 46899986
Q ss_pred CCCC---Cce-EeccC-CCCCCC---CccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCC-CCceEEecCCCCCC
Q 042793 317 DAKP---PTW-REISG-LAPPLP---RSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSME-KPVWREIPVTWTPP 386 (545)
Q Consensus 317 ~t~~---~~W-~~~~~-~~~~~~---r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~-~~~W~~~~~~~~p~ 386 (545)
.++. .-. +.+.. ...|.. ..-.++... .++++|+|-|. ..|.||.... ...|.... .++
T Consensus 89 ~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG~--------~ywr~d~~~~P~~i~~~~~---g~p 157 (219)
T 1hxn_A 89 KGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGR--------RLWWLDLKSGAQATWTELP---WPH 157 (219)
T ss_dssp SSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETT--------EEEEEEGGGGGGCCCEEEC---CSC
T ss_pred CCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeCC--------EEEEEeCCCCceEhhhcCC---CCC
Confidence 5320 000 11211 111222 112333333 34689999773 4789985421 11333222 122
Q ss_pred CCCCcEEEE---------E-CCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 387 SRLGHTLSV---------Y-GGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 387 ~r~~~~~~~---------~-~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.....++.. . .++.+|+|-| +..|+||..
T Consensus 158 ~~vdAa~~~~~~~~~~~~~~~~~~~YFFkg-----------~~y~r~~~~ 196 (219)
T 1hxn_A 158 EKVDGALCMEKPLGPNSCSTSGPNLYLIHG-----------PNLYCYRHV 196 (219)
T ss_dssp SCCSEEEEESSCSSSCCSCSSSCEEEEEET-----------TEEEEESSH
T ss_pred CCcCEEEEccccccccceeccCCeEEEEEC-----------CEEEEEeCC
Confidence 333333331 1 2337888866 567788764
No 329
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=38.11 E-value=2.1e+02 Score=25.33 Aligned_cols=158 Identities=16% Similarity=0.012 Sum_probs=74.9
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccC--CCCCCccceeEEEEcCCEEEEE----cCCCC--------C
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVS--SPPPGRWGHTLSCVNGSHLVVF----GGCGR--------Q 305 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~--~~~~~r~~~~~~~~~~~~iyv~----GG~~~--------~ 305 (545)
++++|+..... ..+++||+.+. +.+.+... ..+..+ -..++.-.++++|+. |.... .
T Consensus 79 dg~l~v~~~~~------~~i~~~d~~~g--~~~~~~~~~~~~~~~~-~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~ 149 (296)
T 3e5z_A 79 QGHLIACSHGL------RRLERQREPGG--EWESIADSFEGKKLNS-PNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEME 149 (296)
T ss_dssp TCCEEEEETTT------TEEEEECSTTC--CEEEEECEETTEECCC-CCCEEECTTSCEEEEECSHHHHCGGGSSCCCCC
T ss_pred CCcEEEEecCC------CeEEEEcCCCC--cEEEEeeccCCCCCCC-CCCEEECCCCCEEEECCcccccccccccccccc
Confidence 46777664321 26899999776 66654311 111111 122333334578886 43110 0
Q ss_pred cccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCCCce---EEecCC
Q 042793 306 GLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVW---REIPVT 382 (545)
Q Consensus 306 ~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W---~~~~~~ 382 (545)
.....++.||+. . +...+... ...+ ...+...++++++.+.. .+.+++|++.. ..+. ..+-.
T Consensus 150 ~~~~~l~~~~~~-g--~~~~~~~~-~~~~---~gi~~s~dg~~lv~~~~------~~~i~~~~~~~-~g~~~~~~~~~~- 214 (296)
T 3e5z_A 150 LPGRWVFRLAPD-G--TLSAPIRD-RVKP---NGLAFLPSGNLLVSDTG------DNATHRYCLNA-RGETEYQGVHFT- 214 (296)
T ss_dssp SSSCEEEEECTT-S--CEEEEECC-CSSE---EEEEECTTSCEEEEETT------TTEEEEEEECS-SSCEEEEEEEEC-
T ss_pred CCCcEEEEECCC-C--CEEEeecC-CCCC---ccEEECCCCCEEEEeCC------CCeEEEEEECC-CCcCcCCCeEee-
Confidence 113478999887 4 44444321 0111 12222223344454432 14688998752 2233 11111
Q ss_pred CCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEee
Q 042793 383 WTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVT 436 (545)
Q Consensus 383 ~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~ 436 (545)
.... .-.+++.-.++.||+..+ +.|++||+. ......+.
T Consensus 215 -~~~~-~p~~i~~d~~G~l~v~~~-----------~~v~~~~~~--g~~~~~~~ 253 (296)
T 3e5z_A 215 -VEPG-KTDGLRVDAGGLIWASAG-----------DGVHVLTPD--GDELGRVL 253 (296)
T ss_dssp -CSSS-CCCSEEEBTTSCEEEEET-----------TEEEEECTT--SCEEEEEE
T ss_pred -CCCC-CCCeEEECCCCCEEEEcC-----------CeEEEECCC--CCEEEEEE
Confidence 1111 112344444558888761 568899987 44444443
No 330
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=38.06 E-value=94 Score=27.22 Aligned_cols=107 Identities=10% Similarity=0.094 Sum_probs=54.3
Q ss_pred EECCEEEEEcCCCCCCCccCceEEEeCC--CCCCce----EEecc--CCCC----CCccceeEEEEcCCEEEEEcCCCCC
Q 042793 238 AVGNRVVLFGGEGVNMQPMNDTFVLDLN--SSNPEW----QHVHV--SSPP----PGRWGHTLSCVNGSHLVVFGGCGRQ 305 (545)
Q Consensus 238 ~~~~~lyv~GG~~~~~~~~~~~~~~d~~--t~~~~W----~~~~~--~~~~----~~r~~~~~~~~~~~~iyv~GG~~~~ 305 (545)
..++++|+|-|. .+|+|+.. +....- +.+.. ..+| ......+...-.++++|+|-|
T Consensus 70 ~~~g~~~fFKg~--------~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG---- 137 (227)
T 3lp9_A 70 TENNEAFIFYEN--------FCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKG---- 137 (227)
T ss_dssp CSTTEEEEEETT--------EEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEET----
T ss_pred CCCCEEEEEeCC--------EEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEEC----
Confidence 367899999873 68888822 110010 01110 0232 122322222113469999987
Q ss_pred cccCcEEEEecCCCCCceE-----eccCCCCCC------CCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 306 GLLNDVFVLDLDAKPPTWR-----EISGLAPPL------PRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 306 ~~~~~~~~yd~~t~~~~W~-----~~~~~~~~~------~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
+..|+||..++ +-. .+... .|. |..-.++... .++++|+|-|. .-|+||..
T Consensus 138 ---~~yw~~d~~~~--~~~~gyPk~i~~g-~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg~--------~Ywr~d~~ 200 (227)
T 3lp9_A 138 ---DQYARIDYGSN--SMVNKEIKSISSG-YPCFRNTIFESGADAAFASHKTNEVYFFKDD--------HYARVKVT 200 (227)
T ss_dssp ---TEEEEEETTTT--EESSSSCEEHHHH-CGGGTTSGGGGCCSEEEECSSTTEEEEEETT--------EEEEEECC
T ss_pred ---CEEEEEeCCCc--cccCCCCeEHHHC-CCCccccccCCCccEEEEcCCCceEEEEECC--------EEEEEECC
Confidence 46899998765 211 11100 011 1222334332 34689999773 46888843
No 331
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=37.75 E-value=2.5e+02 Score=25.99 Aligned_cols=21 Identities=0% Similarity=-0.129 Sum_probs=12.8
Q ss_pred cCCEEEEEcCCCCCcccCcEEEEecC-CC
Q 042793 292 NGSHLVVFGGCGRQGLLNDVFVLDLD-AK 319 (545)
Q Consensus 292 ~~~~iyv~GG~~~~~~~~~~~~yd~~-t~ 319 (545)
+++.||+... + .+.+||+. +.
T Consensus 50 dg~~l~~~~~-~------~v~~~~~~~~g 71 (365)
T 1jof_A 50 ERKNIYGAAM-K------KWSSFAVKSPT 71 (365)
T ss_dssp TSSEEEEEEB-T------EEEEEEEEETT
T ss_pred CCCEEEEEcc-c------eEEEEEECCCC
Confidence 4555766543 1 67888876 55
No 332
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=37.46 E-value=2.3e+02 Score=25.51 Aligned_cols=198 Identities=12% Similarity=0.059 Sum_probs=96.0
Q ss_pred eeeEEE-CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEE
Q 042793 234 FSACAV-GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVF 312 (545)
Q Consensus 234 ~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 312 (545)
...+.. ++.||+.--. ...++++|+... ..... ..+ ..-+.++...++++||...... ...++
T Consensus 35 egia~~~~g~lyv~d~~------~~~I~~~d~~g~---~~~~~--~~~--~~p~gia~~~dG~l~vad~~~~---~~~v~ 98 (306)
T 2p4o_A 35 ENLASAPDGTIFVTNHE------VGEIVSITPDGN---QQIHA--TVE--GKVSGLAFTSNGDLVATGWNAD---SIPVV 98 (306)
T ss_dssp EEEEECTTSCEEEEETT------TTEEEEECTTCC---EEEEE--ECS--SEEEEEEECTTSCEEEEEECTT---SCEEE
T ss_pred ceEEECCCCCEEEEeCC------CCeEEEECCCCc---eEEEE--eCC--CCceeEEEcCCCcEEEEeccCC---cceEE
Confidence 344442 4568887521 136899998764 22221 111 1223444333456888753211 12478
Q ss_pred EEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCCC-CceEEecC--CCCCCC--
Q 042793 313 VLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEK-PVWREIPV--TWTPPS-- 387 (545)
Q Consensus 313 ~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~-~~W~~~~~--~~~p~~-- 387 (545)
.||+.+. +.+.+... +..+.....+...++.+|+..- ....+|++|..... ..|..-.. ...+..
T Consensus 99 ~~d~~~g--~~~~~~~~--~~~~~~~g~~~~~~~~~~v~d~------~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~ 168 (306)
T 2p4o_A 99 SLVKSDG--TVETLLTL--PDAIFLNGITPLSDTQYLTADS------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF 168 (306)
T ss_dssp EEECTTS--CEEEEEEC--TTCSCEEEEEESSSSEEEEEET------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred EEcCCCC--eEEEEEeC--CCccccCcccccCCCcEEEEEC------CCCeEEEEeCCCCcEeEEEECCccccccccCCC
Confidence 8898887 66655443 3334333444445557777532 12468899853211 11211000 001111
Q ss_pred CCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCce---EEeecCCCCCCCCCCCCCCCCCcceEEEEecC
Q 042793 388 RLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCW---RCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPG 464 (545)
Q Consensus 388 r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W---~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~ 464 (545)
.....+ ..+++.||+.--. .+.|++|++..+ .+. ..+... ..|+ . .++-.+
T Consensus 169 ~~pngi-s~dg~~lyv~d~~---------~~~I~~~~~~~~-g~~~~~~~~~~~------------~~P~--g-i~vd~d 222 (306)
T 2p4o_A 169 PAANGL-KRFGNFLYVSNTE---------KMLLLRIPVDST-DKPGEPEIFVEQ------------TNID--D-FAFDVE 222 (306)
T ss_dssp CSEEEE-EEETTEEEEEETT---------TTEEEEEEBCTT-SCBCCCEEEEES------------CCCS--S-EEEBTT
T ss_pred CcCCCc-CcCCCEEEEEeCC---------CCEEEEEEeCCC-CCCCccEEEecc------------CCCC--C-eEECCC
Confidence 111223 3334488887532 478999998631 111 111111 1121 1 233336
Q ss_pred CEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 465 GRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 465 ~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
++|||.-.. .+.|.+||++
T Consensus 223 G~l~va~~~------~~~V~~~~~~ 241 (306)
T 2p4o_A 223 GNLYGATHI------YNSVVRIAPD 241 (306)
T ss_dssp CCEEEECBT------TCCEEEECTT
T ss_pred CCEEEEeCC------CCeEEEECCC
Confidence 788887432 3679999985
No 333
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=37.33 E-value=2.7e+02 Score=26.25 Aligned_cols=108 Identities=14% Similarity=0.128 Sum_probs=51.6
Q ss_pred ceEEEeCCCCCCceEEeccCCCCCCccceeEEEEc--CCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCC-CC-C
Q 042793 258 DTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVN--GSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLA-PP-L 333 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~-~~-~ 333 (545)
-+++++......+|+.+. ..+....-++++.-. ++.||+.+.....+ ..++..+-... +|+.+.... .+ .
T Consensus 32 Gl~~~~~~~~g~~W~~~~--~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g--~gl~~s~D~G~--tW~~~~~~~~~~~~ 105 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRG--PVFLGHTIHHIVQDPREPERMLMAARTGHLG--PTVFRSDDGGG--NWTEATRPPAFNKA 105 (394)
T ss_dssp EEEEEEECTTSCSEEEEE--EESTTSEEEEEEECSSSTTCEEEEEEC--CC--EEEEEESSTTS--CCEECSBCCCCCCC
T ss_pred ceEEEECCCCCCCceECC--ccCCCCceEEEEECCCCCCeEEEEecCCCCC--ccEEEeCCCCC--CceECCccccCCCc
Confidence 477777654223898763 111222223433221 45788765421111 13565554455 999886421 01 1
Q ss_pred -CC-----ccc-eEEEEc----CCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEec
Q 042793 334 -PR-----SWH-SSCTLD----GTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIP 380 (545)
Q Consensus 334 -~r-----~~~-~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 380 (545)
.+ ..+ .++..+ .+.+|+.+.. .-+++.+ ....+|+.+.
T Consensus 106 ~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~-------ggl~~S~--DgG~tW~~~~ 154 (394)
T 3b7f_A 106 PEGETGRVVDHVFWLTPGHASEPGTWYAGTSP-------QGLFRST--DHGASWEPVA 154 (394)
T ss_dssp C----CCCCCEEEEEEECCTTSTTCEEEEEET-------TEEEEES--STTSBCEECH
T ss_pred ccccccccccceeEEEeCCCCCCCEEEEEecC-------CcEEEEc--CCCCCeEECc
Confidence 11 011 122332 4577775321 2366666 5567999875
No 334
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=36.71 E-value=10 Score=28.30 Aligned_cols=54 Identities=15% Similarity=0.066 Sum_probs=31.9
Q ss_pred Hhhhhhhhhccccc-----CCCccc-CCCC-ccccccCcccc-hhhHHHHH--hhccCChhhhh
Q 042793 104 FLKSSERQRSFFSG-----NRTFPI-GDRN-VCREVCGIFQL-SDEVISLK--ILSWLSPRDIA 157 (545)
Q Consensus 104 ~~~~~~r~~~~~~~-----~~~~~~-g~~~-~~~~~~~~~~l-p~~~~~~~--~~~~l~~~~~~ 157 (545)
+.+.+++++.++++ +..+.+ +... +|++.+.+.|+ ++++.+.. +...+++.+..
T Consensus 6 l~~~~~~~~~~~~~~~~~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 69 (125)
T 3eeh_A 6 AAKSERRVRELTEATNDILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRE 69 (125)
T ss_dssp ----CHHHHHHHSCCCCEEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHH
Confidence 34466777777764 444555 5443 79999999999 66665422 34556665543
No 335
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=36.46 E-value=2.4e+02 Score=25.50 Aligned_cols=211 Identities=9% Similarity=-0.040 Sum_probs=99.7
Q ss_pred eeeEEE--CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCC-CCCccceeEEEEc-CCEEEEEcCCCC-----
Q 042793 234 FSACAV--GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSP-PPGRWGHTLSCVN-GSHLVVFGGCGR----- 304 (545)
Q Consensus 234 ~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~-~~~r~~~~~~~~~-~~~iyv~GG~~~----- 304 (545)
++++.. ++.|||.-.. ..++++|+.+. ..+.+..... .....-..+++-. ++.||+.-....
T Consensus 83 ~gi~~~~~~g~l~v~d~~-------~~i~~~d~~~g--~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~ 153 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCY-------YHLSVVGSEGG--HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRG 153 (322)
T ss_dssp EEEEEETTTTEEEEEETT-------TEEEEECTTCE--ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTC
T ss_pred ceEEEcCCCCcEEEEECC-------CCEEEEeCCCC--EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccc
Confidence 445554 5789887421 24888988765 4444421100 0011122333333 457888642210
Q ss_pred -------CcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCC-Cc
Q 042793 305 -------QGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEK-PV 375 (545)
Q Consensus 305 -------~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~-~~ 375 (545)
......+++||+.+. +.+.+... ...| ...+.- +++.+||.-.. .+.+++|++.... ..
T Consensus 154 ~~~~~~~~~~~g~v~~~d~~~~--~~~~~~~~-~~~p---~gia~~~dg~~lyv~d~~------~~~I~~~~~~~~~~~~ 221 (322)
T 2fp8_A 154 VQQIMDTSDKTGRLIKYDPSTK--ETTLLLKE-LHVP---GGAEVSADSSFVLVAEFL------SHQIVKYWLEGPKKGT 221 (322)
T ss_dssp HHHHHHHTCCCEEEEEEETTTT--EEEEEEEE-ESCC---CEEEECTTSSEEEEEEGG------GTEEEEEESSSTTTTC
T ss_pred cceehcccCCCceEEEEeCCCC--EEEEeccC-CccC---cceEECCCCCEEEEEeCC------CCeEEEEECCCCcCCc
Confidence 011256899999877 55443221 0111 112222 34468886321 2468999975321 13
Q ss_pred eEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCC-CccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCC
Q 042793 376 WREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGP-LRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPR 454 (545)
Q Consensus 376 W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~-~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r 454 (545)
.+.+.. .+. -..+++-.++.||+......... .......+++||+. ...-..+... .+. + .
T Consensus 222 ~~~~~~--~~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--G~~~~~~~~~--------~g~-~--~ 283 (322)
T 2fp8_A 222 AEVLVK--IPN---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF--GNILEVIPLP--------PPF-A--G 283 (322)
T ss_dssp EEEEEE--CSS---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT--SCEEEEEECC--------TTT-T--T
T ss_pred cceEEe--CCC---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC--CCEEEEEECC--------CCC-c--c
Confidence 333321 221 23344444457888753311000 00013568899986 4434444321 011 1 1
Q ss_pred cceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 455 LDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 455 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
...++++..+++|||.... .+.|.+|+++
T Consensus 284 ~~~~~~~~~~g~L~v~~~~------~~~i~~~~~~ 312 (322)
T 2fp8_A 284 EHFEQIQEHDGLLYIGTLF------HGSVGILVYD 312 (322)
T ss_dssp SCCCEEEEETTEEEEECSS------CSEEEEEEC-
T ss_pred ccceEEEEeCCEEEEeecC------CCceEEEecc
Confidence 1122333448889987442 3678889885
No 336
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=36.14 E-value=2.3e+02 Score=25.10 Aligned_cols=22 Identities=9% Similarity=0.222 Sum_probs=15.2
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSS 267 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~ 267 (545)
+++.++.|+.+. .+.++|..+.
T Consensus 78 ~~~~l~sgs~Dg------~v~iw~~~~~ 99 (318)
T 4ggc_A 78 EGNYLAVGTSSA------EVQLWDVQQQ 99 (318)
T ss_dssp TSSEEEEEETTS------EEEEEETTTT
T ss_pred CCCEEEEEECCC------cEEEeecCCc
Confidence 456677777542 6888888876
No 337
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=35.35 E-value=98 Score=24.04 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=21.4
Q ss_pred eEEEEEEEeecCCCCEEEEEEEeeeeee
Q 042793 62 MNRLRLSPIYGDDETITHVIGIQFFTEA 89 (545)
Q Consensus 62 w~~~~~~pi~d~~g~~~~~i~~~~Dite 89 (545)
.......||++++|++++.+.+-.++..
T Consensus 100 ~~~~~~~PV~~~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 100 SSLRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred eeEEEEEeEECCCCCEEEEEEEEEEhHH
Confidence 3334456999888999999988877763
No 338
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=35.03 E-value=10 Score=28.56 Aligned_cols=41 Identities=5% Similarity=0.019 Sum_probs=31.8
Q ss_pred CCCcccCCCC-ccccccCcccc-hhhHHHHHhhccCChhhhhh
Q 042793 118 NRTFPIGDRN-VCREVCGIFQL-SDEVISLKILSWLSPRDIAS 158 (545)
Q Consensus 118 ~~~~~~g~~~-~~~~~~~~~~l-p~~~~~~~~~~~l~~~~~~~ 158 (545)
+..++++... +|++.+.++|+ |+|+++..+..++++.+...
T Consensus 13 ~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~ 55 (117)
T 3f1p_A 13 SEHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSEN 55 (117)
T ss_dssp EEECTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHH
T ss_pred EEECCCceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHH
Confidence 3445566553 89999999999 88988877888898887654
No 339
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=34.92 E-value=4.1 Score=30.65 Aligned_cols=36 Identities=8% Similarity=-0.016 Sum_probs=25.1
Q ss_pred CCCcccCCCC-ccccccCcccc-hhhHHHHHhhccCCh
Q 042793 118 NRTFPIGDRN-VCREVCGIFQL-SDEVISLKILSWLSP 153 (545)
Q Consensus 118 ~~~~~~g~~~-~~~~~~~~~~l-p~~~~~~~~~~~l~~ 153 (545)
+..+.+|... +|++.+.+.|+ ++++++..+..++|.
T Consensus 27 ~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~ 64 (118)
T 3olo_A 27 FCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVD 64 (118)
T ss_dssp EEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTT
T ss_pred EEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhhcccc
Confidence 4455666553 89999999999 778776555555544
No 340
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=34.00 E-value=3.4e+02 Score=26.49 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=72.0
Q ss_pred EEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceE--eccCCCCCCCCccceEEEEc-CCEEEEEcCCCCCCCccCcE
Q 042793 288 LSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWR--EISGLAPPLPRSWHSSCTLD-GTKLIVSGGCADSGVLLSDT 364 (545)
Q Consensus 288 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~--~~~~~~~~~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~ 364 (545)
++.+ .+++|+|-|. -+|.++.... .+. .|...-+..|..--++.... ++++|+|-|. ..
T Consensus 268 i~~~-~ge~y~Fkg~-------~~wr~~~~~~--~~~p~~I~~~Wp~LP~~iDAa~~~~~~g~~~fFKg~--------~~ 329 (450)
T 1su3_A 268 ITTI-RGEVMFFKDR-------FYMRTNPFYP--EVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGN--------KY 329 (450)
T ss_dssp EEEE-TTEEEEEETT-------EEEECCTTSS--SCEEEEGGGTCTTSCSSCCEEEEEGGGTEEEEEETT--------EE
T ss_pred EEec-CCeEEEEeCC-------EEEEEcCCCC--cccceehhHhccCCCCCeeEEEEEcCCCeEEEEeCC--------EE
Confidence 3445 4589999773 3455554332 222 22221111122222333332 4589998763 36
Q ss_pred EEEecCCCCC--c-eEEec-CCCCCC--CCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCce-----E
Q 042793 365 FLLDLSMEKP--V-WREIP-VTWTPP--SRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCW-----R 433 (545)
Q Consensus 365 ~~~d~~~~~~--~-W~~~~-~~~~p~--~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W-----~ 433 (545)
|+|+ ..+. . =..+. .-..|. ....++.....++++|+|-| +..|+||.. +.+- +
T Consensus 330 W~~~--~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-----------~~yw~yd~~--~~~~~~gYPk 394 (450)
T 1su3_A 330 WAVQ--GQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-----------NKYWRYDEY--KRSMDPGYPK 394 (450)
T ss_dssp EEEE--TTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-----------TEEEEEETT--TTEECSSCSE
T ss_pred EEec--CCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-----------CEEEEEeCC--CccccCCCCc
Confidence 7776 2110 0 11121 012332 23333333333459999966 689999975 2211 0
Q ss_pred EeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 434 CVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 434 ~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
.+... . .| .| ..-.+++.. ++++|+|-| +..|.||..
T Consensus 395 ~I~~~-f------pg-ip--~~iDAA~~~-~g~~YFFkg--------~~ywr~d~~ 431 (450)
T 1su3_A 395 MIAHD-F------PG-IG--HKVDAVFMK-DGFFYFFHG--------TRQYKFDPK 431 (450)
T ss_dssp EHHHH-S------TT-SC--SCCSEEEEE-TTEEEEEET--------TEEEEEETT
T ss_pred chhhc-C------CC-CC--CCccEEEEc-CCeEEEEeC--------CEEEEEECC
Confidence 11100 0 01 12 222344444 899999977 568999985
No 341
>4fj6_A Glycoside hydrolase family 33, candidate sialidas; bacterial neuraminidase repeat; HET: MSE GOL; 1.90A {Parabacteroides distasonis}
Probab=33.92 E-value=3e+02 Score=27.60 Aligned_cols=136 Identities=10% Similarity=0.080 Sum_probs=60.0
Q ss_pred CCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCC
Q 042793 371 MEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIA 450 (545)
Q Consensus 371 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~ 450 (545)
....+|+.... .+......+++...+++|++.--....+ .. .++.......+|++.... ...+
T Consensus 360 D~G~TW~~~~~--~~~~~~e~~vve~~dG~L~~~~R~~~~g-----~r--~v~~S~D~G~TWt~~~~~--------~~~L 422 (523)
T 4fj6_A 360 DRGKTWHLHNL--ARTNTTEAQVAEVEPGVLMLNMRDNRGG-----SR--AVATTKDLGKTWTEHPSS--------RSAL 422 (523)
T ss_dssp STTSSCEECCC--SEETEEEEEEEEEETTEEEEEEEETTCS-----BC--EEEEESSTTSSCEECTTT--------TTSS
T ss_pred CCCCeEEECCC--CCccccCCEEEEecCCEEEEEEEecCCC-----cE--EEEEECCCCCccCcCcCc--------cccC
Confidence 34679987643 3322223344455555888853221111 12 223332235789987422 0124
Q ss_pred CCCCcceEEEEec------CCEEEEEcCcCCCCCCCC-ceEEEcCCCCCCceEEeccCCCCCCCCCCce-eEEeCCeeEE
Q 042793 451 PPPRLDHVAVSLP------GGRILIFGGSVAGLHSAT-QLYLLDPTEEKPTWRILNVPGRPPRFAWGHS-TCVVGGTRTI 522 (545)
Q Consensus 451 p~~r~~~~~~~~~------~~~l~v~GG~~~~~~~~~-~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~-~~~~~~~~l~ 522 (545)
|.|.+..+.+.+. +..++++..-.......+ .++. ..+ +..+|......-......++++ ++.+.++.|.
T Consensus 423 ~~P~c~~Sii~~~~~~~~~g~~~lL~snp~~~~~R~~l~v~~-S~D-~G~TW~~~~~v~~~~~~~~~Ys~l~~~~dG~i~ 500 (523)
T 4fj6_A 423 QESVCMASLIKVNAKDNITGKDLLLFSNPNTTKGRNHITIKA-SLD-GGLTWPTEHQVLLDEAEGWGYSCLSMIDKETVG 500 (523)
T ss_dssp BCSSCCCEEEEECGGGSTTCSCEEEEEEECCSSSSCCEEEEE-ESS-TTSCCCGGGEEEEECSCCCCCEEEEECSSSEEE
T ss_pred CCCCcccEEEEEecccCCCCCcEEEEEccCCCCccccceEEE-eCC-CCCCCccCceEEEcCCCCcccceEEEcCCCEEE
Confidence 5555544444442 235666655332221222 2332 332 3568975321000011123344 4445567776
Q ss_pred EEc
Q 042793 523 VLG 525 (545)
Q Consensus 523 i~G 525 (545)
|+=
T Consensus 501 ilY 503 (523)
T 4fj6_A 501 IFY 503 (523)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 342
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=33.29 E-value=2.4e+02 Score=24.43 Aligned_cols=105 Identities=16% Similarity=0.290 Sum_probs=51.1
Q ss_pred CCEEEEEcCCCCCcccCcEEEEecCCCCCce--EeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecC
Q 042793 293 GSHLVVFGGCGRQGLLNDVFVLDLDAKPPTW--REISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLS 370 (545)
Q Consensus 293 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W--~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 370 (545)
++++|+|=| +..|.++.... .+ ..|...-+..|..-.++... ++++|+|-|. ..|+|+..
T Consensus 28 ~g~~yfFkg-------~~~Wr~~~~~~--~~~p~~Is~~wpgLP~~IDAA~~~-~~~~yfFkG~--------~yw~~~~~ 89 (219)
T 1hxn_A 28 HGATYVFSG-------SHYWRLDTNRD--GWHSWPIAHQWPQGPSTVDAAFSW-EDKLYLIQDT--------KVYVFLTK 89 (219)
T ss_dssp TSCEEEEET-------TEEEESSSSSC--TTCCEEGGGTCTTSCSSCSEEEEE-TTEEEEEETT--------EEEEEECS
T ss_pred CCcEEEEeC-------CEEEEEcCCCC--CCCceEhhhhccCCCCCccEEEEE-CCcEEEecCC--------EEEEEeCC
Confidence 457999876 24566554332 11 12222100112223344455 5699999763 47888742
Q ss_pred CC----CCceEEecC-CCCCCC----CCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 371 ME----KPVWREIPV-TWTPPS----RLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 371 ~~----~~~W~~~~~-~~~p~~----r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
.+ ..-=+.+.. -++|.. +..+++....++++|+|-| +..|+||..
T Consensus 90 ~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG-----------~~ywr~d~~ 143 (219)
T 1hxn_A 90 GGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-----------RRLWWLDLK 143 (219)
T ss_dssp SSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-----------TEEEEEEGG
T ss_pred CCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC-----------CEEEEEeCC
Confidence 11 000011211 123332 1222222223459999977 678999975
No 343
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=32.72 E-value=2.6e+02 Score=24.71 Aligned_cols=53 Identities=8% Similarity=0.209 Sum_probs=29.2
Q ss_pred ceEEEeCCCCCCceEEeccCCCCCCc-cceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 258 DTFVLDLNSSNPEWQHVHVSSPPPGR-WGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~~~~~~~r-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
.+.++|+.+. +...+- ...... .-.+++...+++.++.|+.+ ..+.++|..+.
T Consensus 46 tV~iWd~~tg--~~~~~~--~~~~~~~~V~~v~~~~~~~~l~sgs~D-----g~v~iw~~~~~ 99 (318)
T 4ggc_A 46 SVYLWSASSG--DILQLL--QMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQ 99 (318)
T ss_dssp EEEEEETTTC--CEEEEE--ECCSTTCCEEEEEECTTSSEEEEEETT-----SEEEEEETTTT
T ss_pred EEEEEECCCC--CEEEEE--EecCCCCeEEEEEECCCCCEEEEEECC-----CcEEEeecCCc
Confidence 6888898876 544322 111111 11222223344566777754 35888999887
No 344
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=32.33 E-value=80 Score=26.95 Aligned_cols=53 Identities=11% Similarity=0.032 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeeee
Q 042793 35 SEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTEA 89 (545)
Q Consensus 35 ~~~~~~~~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dite 89 (545)
..+.+++..++.+-.+....+..|. ++..-..||++.+|++.+++++..++..
T Consensus 99 ~~f~~a~~~~~~~is~~~~~~~~g~--~~i~ia~pi~~~~g~~~Gvl~~~i~l~~ 151 (217)
T 4dah_A 99 SFFIKAKETKKTVISDSYSSRITGQ--PIFTICVPVLDSKRNVTDYLVAAIQIDY 151 (217)
T ss_dssp HHHHHHHHHCSCEECCCEECTTTCS--EEEEEEEEEECTTSCEEEEEEEEEEHHH
T ss_pred HHHHHHHhcCCcEEeceEEcCCCCC--EEEEEEEEEECCCCCEEEEEEEEEcHHH
Confidence 3444556657666555554455666 5556678999989999998888777763
No 345
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=32.24 E-value=3.9e+02 Score=26.62 Aligned_cols=58 Identities=19% Similarity=0.111 Sum_probs=32.4
Q ss_pred cEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEe
Q 042793 419 DVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRIL 498 (545)
Q Consensus 419 ~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~ 498 (545)
.+..||+. +.+-+.+... +. .......+++.+++++.+.+. ...+|.+|++ +.+++.+
T Consensus 133 ~~~l~d~~--~g~~~~l~~~------------~~----~~~~~spDG~~la~~~~~~~~--~~~i~~~d~~--~g~~~~l 190 (582)
T 3o4h_A 133 RVALYALD--GGGLRELARL------------PG----FGFVSDIRGDLIAGLGFFGGG--RVSLFTSNLS--SGGLRVF 190 (582)
T ss_dssp CEEEEEEE--TTEEEEEEEE------------SS----CEEEEEEETTEEEEEEEEETT--EEEEEEEETT--TCCCEEE
T ss_pred CceEEEcc--CCcEEEeecC------------CC----ceEEECCCCCEEEEEEEcCCC--CeEEEEEcCC--CCCceEe
Confidence 33466877 5566666533 21 222223467777766543221 2459999986 4566666
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=31.54 E-value=62 Score=30.48 Aligned_cols=109 Identities=8% Similarity=0.103 Sum_probs=53.7
Q ss_pred ceEEEeCCCCCCceEEecc--CCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCceEe-ccCCCCCCC
Q 042793 258 DTFVLDLNSSNPEWQHVHV--SSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWRE-ISGLAPPLP 334 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~--~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~-~~~~~~~~~ 334 (545)
.++.+|..+....|+.-.. .++...+.... ..++.+|++....+ ..++.||..+....|.. ++.+....|
T Consensus 21 ~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~---~~~~~~~vv~p~~d----G~l~a~~~~~G~~~~~~~~~~lv~~SP 93 (339)
T 2be1_A 21 GLHAVDRRNGHIIWSIEPENFQPLIEIQEPSR---LETYETLIIEPFGD----GNIYYFNAHQGLQKLPLSIRQLVSTSP 93 (339)
T ss_dssp CEEEEETTTTEEEEEECGGGSCCSEECCCSCT---TTSSEEEEECCSTT----TEEEEEETTTEEEEEEEEHHHHHTTCS
T ss_pred eEEEEECCCCcEEEEecCCccCCcEEecCCcc---ccCCcEEEEEECCC----CEEEEEECCCCcEEeeeccccceeccc
Confidence 7999999888778985321 11111111110 12345666643221 35888998877223431 111100112
Q ss_pred CccceEEEE-------cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEec
Q 042793 335 RSWHSSCTL-------DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIP 380 (545)
Q Consensus 335 r~~~~~~~~-------~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 380 (545)
....+.-++ .++.+| +|+. -..++.+|+.+....|+.-.
T Consensus 94 ~~~~~~pvv~~~~~~~~~g~Vy-~Gs~------~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 94 LHLKTNIVVNDSGKIVEDEKVY-TGSM------RTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp EEEECC----------CCEEEE-ECEE------EEEEEEEETTTCCEEEEEST
T ss_pred cccCCCceeecccccccCCEEE-EEec------CCEEEEEECCCCcEEEEEec
Confidence 111111122 343444 4443 23588999888888888643
No 347
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=30.76 E-value=3.6e+02 Score=25.70 Aligned_cols=157 Identities=7% Similarity=0.030 Sum_probs=77.5
Q ss_pred cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCC
Q 042793 292 NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSM 371 (545)
Q Consensus 292 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 371 (545)
.+++||+.... .+.+.++|+.+. .-..+... ...+ +-+...+++.+|+...... ..++.++...
T Consensus 140 ~~g~lyv~d~~-----~~~I~~id~~~g--~~~~~~~~-~~~~---~ia~~~~g~~l~~~d~~~~-----~~I~~~d~~~ 203 (409)
T 3hrp_A 140 GNNTVLAYQRD-----DPRVRLISVDDN--KVTTVHPG-FKGG---KPAVTKDKQRVYSIGWEGT-----HTVYVYMKAS 203 (409)
T ss_dssp STTEEEEEETT-----TTEEEEEETTTT--EEEEEEET-CCBC---BCEECTTSSEEEEEBSSTT-----CEEEEEEGGG
T ss_pred CCCCEEEEecC-----CCcEEEEECCCC--EEEEeecc-CCCC---ceeEecCCCcEEEEecCCC-----ceEEEEEcCC
Confidence 44579998652 246899999887 55444322 1112 2222224556777654211 1688898643
Q ss_pred CCCceEEecCCCCCCCCCCcEEEEEC-CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCC
Q 042793 372 EKPVWREIPVTWTPPSRLGHTLSVYG-GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIA 450 (545)
Q Consensus 372 ~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~ 450 (545)
. .....+.....+....-+++++.. ++.||+... ...|++||+. +.....+...+... ...
T Consensus 204 ~-~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~----------~~~I~~~d~~--~~~~~~~~~~~~~g-----~~~ 265 (409)
T 3hrp_A 204 G-WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS----------NKNFGRFNVK--TQEVTLIKQLELSG-----SLG 265 (409)
T ss_dssp T-TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT----------TCEEEEEETT--TCCEEEEEECCCCS-----CCC
T ss_pred C-ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC----------CCcEEEEECC--CCCEEEEecccccC-----CCC
Confidence 2 122333110010122224444544 558998432 2579999998 54444443221000 000
Q ss_pred CCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 451 PPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 451 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
..|+ .+.++.-.++.||+.-.. .+.|++|+++
T Consensus 266 ~~P~-~~ia~~p~~g~lyv~d~~------~~~I~~~~~~ 297 (409)
T 3hrp_A 266 TNPG-PYLIYYFVDSNFYMSDQN------LSSVYKITPD 297 (409)
T ss_dssp CSSC-CEEEEETTTTEEEEEETT------TTEEEEECTT
T ss_pred CCcc-ccEEEeCCCCEEEEEeCC------CCEEEEEecC
Confidence 1111 022222225789987432 3679999985
No 348
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=30.65 E-value=3.5e+02 Score=25.50 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=13.7
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSS 267 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~ 267 (545)
++.+++.|+.+. .+.++|+.+.
T Consensus 39 ~g~~la~g~~dg------~v~iw~~~~~ 60 (447)
T 3dw8_B 39 SGELLATGDKGG------RVVIFQQEQE 60 (447)
T ss_dssp SSSEEEEEETTS------EEEEEEECC-
T ss_pred CCCEEEEEcCCC------eEEEEEecCC
Confidence 456677776542 6778887654
No 349
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=29.47 E-value=4.1e+02 Score=25.95 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=14.8
Q ss_pred CCcEEEEECCcEEEEEccc
Q 042793 389 LGHTLSVYGGRKILMFGGL 407 (545)
Q Consensus 389 ~~~~~~~~~~~~lyi~GG~ 407 (545)
..|+++...++.+|.+|-.
T Consensus 266 ~~hs~alt~~G~v~~wG~n 284 (473)
T 3of7_A 266 ENHCFALTKDNKLVSWGLN 284 (473)
T ss_dssp SSEEEEEETTSCEEEEEEC
T ss_pred CCeEEEEecCCCEEEeCCC
Confidence 5678888777799999854
No 350
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=29.19 E-value=4.8e+02 Score=27.32 Aligned_cols=104 Identities=15% Similarity=0.240 Sum_probs=56.0
Q ss_pred CCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCC----cccCcEEEEecCCCCCceEeccCCCCC--CCCccceEE
Q 042793 268 NPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQ----GLLNDVFVLDLDAKPPTWREISGLAPP--LPRSWHSSC 341 (545)
Q Consensus 268 ~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~t~~~~W~~~~~~~~~--~~r~~~~~~ 341 (545)
..+|+.+. .+|.....|.++.-.++.+|+..+.... .....++.++-... +|+.+...+.. ..+++++.+
T Consensus 231 G~tW~~~~--~~p~~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~--tW~~i~~~~~~~~~~~~~~~~i 306 (737)
T 2cn3_A 231 GVTWKAVP--GQPKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTG--EWIDITPIPYSSSDNRFCFAGL 306 (737)
T ss_dssp TSCCEECT--TCCCSSEEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTC--CEEECCSSCTTSTTCCSEEEEE
T ss_pred CCceEECC--CCCCcccceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCC--CEEEccCCCCCCcccccccccE
Confidence 45899876 5555444344432225588887543211 12345788887777 99998765211 123444444
Q ss_pred EE---cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEe
Q 042793 342 TL---DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREI 379 (545)
Q Consensus 342 ~~---~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 379 (545)
.+ +.+.+|+.+.... ..+..+|.-.....+|+.+
T Consensus 307 ~v~p~~~~~ly~~~~~~~----~~~~~l~~S~DgG~tW~~~ 343 (737)
T 2cn3_A 307 AVDRQNPDIIMVTSMNAW----WPDEYIFRSTDGGATWKNI 343 (737)
T ss_dssp EECTTCTTCEEEEEECCC----SSCCCEEEESSTTSSCEES
T ss_pred EEcCCCCCEEEEEecccC----CCCccEEEeCCCCccccch
Confidence 44 2357888754311 1122333333556688877
No 351
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=28.18 E-value=3.9e+02 Score=25.24 Aligned_cols=66 Identities=11% Similarity=0.010 Sum_probs=33.5
Q ss_pred ccceEEEEcCCEEEEEcCCCCCCCc---cCcEEEEecC--CCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEccc
Q 042793 336 SWHSSCTLDGTKLIVSGGCADSGVL---LSDTFLLDLS--MEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGL 407 (545)
Q Consensus 336 ~~~~~~~~~~~~iyv~GG~~~~~~~---~~~~~~~d~~--~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~ 407 (545)
..|+++...++++|..|--.....- .......... ........+.. -..|++++..++.+|..|-.
T Consensus 116 ~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~------G~~hs~alt~~G~v~~wG~n 186 (389)
T 3kci_A 116 GKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA------GGAHSACVTAAGDLYTWGKG 186 (389)
T ss_dssp CSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE------CSSEEEEEETTSCEEEEECC
T ss_pred CCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe------CcCeEEEEeCCCeEEEeCCC
Confidence 3467766667799999853211100 0111111100 00112333332 34688888877799999853
No 352
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=27.66 E-value=3.3e+02 Score=24.31 Aligned_cols=155 Identities=8% Similarity=-0.031 Sum_probs=71.0
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
++.||+.+-.+ +.++++++. . ..+.+.. +.. .-..++.-.++++|+.... ...+.+||++ .
T Consensus 56 g~~l~~~d~~~------~~i~~~~~~-g--~~~~~~~---~~~-~~~gl~~d~dG~l~v~~~~-----~~~v~~~~~~-g 116 (305)
T 3dr2_A 56 QRTLVWSDLVG------RRVLGWRED-G--TVDVLLD---ATA-FTNGNAVDAQQRLVHCEHG-----RRAITRSDAD-G 116 (305)
T ss_dssp GTEEEEEETTT------TEEEEEETT-S--CEEEEEE---SCS-CEEEEEECTTSCEEEEETT-----TTEEEEECTT-S
T ss_pred CCEEEEEECCC------CEEEEEeCC-C--CEEEEeC---CCC-ccceeeECCCCCEEEEECC-----CCEEEEECCC-C
Confidence 34577776432 368899884 3 4443321 111 1123333334467776321 1358888886 4
Q ss_pred CCceEeccCCCCCCC-CccceEEEEcCCEEEEE----cCCCC-------CCCccCcEEEEecCCCCCceEEecCCCCCCC
Q 042793 320 PPTWREISGLAPPLP-RSWHSSCTLDGTKLIVS----GGCAD-------SGVLLSDTFLLDLSMEKPVWREIPVTWTPPS 387 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~-r~~~~~~~~~~~~iyv~----GG~~~-------~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~ 387 (545)
+.+.+.......+ ..-...+.-.++.+|+. |-... .......+++||.. +.+.+.+. . ..
T Consensus 117 --~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~--~g~~~~~~-~-~~-- 188 (305)
T 3dr2_A 117 --QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD--GSPLQRMA-D-LD-- 188 (305)
T ss_dssp --CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS--SCCCEEEE-E-ES--
T ss_pred --CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC--CCcEEEEe-c-CC--
Confidence 5554432100000 11122333334578885 32110 01112458888854 33555443 1 11
Q ss_pred CCCcEEEEEC-CcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 388 RLGHTLSVYG-GRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 388 r~~~~~~~~~-~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
....++... ++.||+......... ...|++|++.
T Consensus 189 -~p~gl~~spdg~~lyv~~~~~~~~~----~~~i~~~~~~ 223 (305)
T 3dr2_A 189 -HPNGLAFSPDEQTLYVSQTPEQGHG----SVEITAFAWR 223 (305)
T ss_dssp -SEEEEEECTTSSEEEEEECCC---C----CCEEEEEEEE
T ss_pred -CCcceEEcCCCCEEEEEecCCcCCC----CCEEEEEEec
Confidence 112333433 335887654321110 2678999886
No 353
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=27.49 E-value=4.4e+02 Score=25.70 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=33.1
Q ss_pred cceEEEEecCCEEEEEcCcCCCCCCCCceE-----EEcCCC-CCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcC
Q 042793 455 LDHVAVSLPGGRILIFGGSVAGLHSATQLY-----LLDPTE-EKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGG 526 (545)
Q Consensus 455 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~-----~~d~~~-~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG 526 (545)
..|++++..+++||.+|-...+.--..... .+.+.. .......+. .-..|++++..++.||.+|-
T Consensus 213 ~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia-------~G~~hs~alt~~G~v~~wG~ 283 (473)
T 3of7_A 213 KDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIA-------SGENHCFALTKDNKLVSWGL 283 (473)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEE-------ECSSEEEEEETTSCEEEEEE
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEe-------cCCCeEEEEecCCCEEEeCC
Confidence 457777777889999986432211000000 000000 001122221 22457787777899999983
No 354
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=26.49 E-value=4.8e+02 Score=25.80 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=28.2
Q ss_pred ceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 258 DTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
.+.+||..+. .... . ..........+..+ .++++++.|+.+ ..+.+||+.+.
T Consensus 468 ~i~~~~~~~~--~~~~-~--~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~i~iw~~~~~ 520 (615)
T 1pgu_A 468 TIQVFKLSDL--EVSF-D--LKTPLRAKPSYISISPSETYIAAGDVM-----GKILLYDLQSR 520 (615)
T ss_dssp CEEEEETTEE--EEEE-E--CSSCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTT
T ss_pred eEEEEECCCc--cccc-c--ccCCccCceEEEEECCCCCEEEEcCCC-----CeEEEeeCCCC
Confidence 6888998765 3321 1 11111222223333 234566777654 35899999876
No 355
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=26.45 E-value=4.1e+02 Score=24.99 Aligned_cols=64 Identities=11% Similarity=0.211 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCce-EEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEW-QHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLD 317 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W-~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~ 317 (545)
++.+++.|+.+. .+.++|+.+. +- ..+. .+.......+..+ .+++.++.|+.+ ..+.+||+.
T Consensus 181 ~~~~l~~~~~d~------~i~iwd~~~~--~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~ 244 (437)
T 3gre_A 181 EKSLLVALTNLS------RVIIFDIRTL--ERLQIIE---NSPRHGAVSSICIDEECCVLILGTTR-----GIIDIWDIR 244 (437)
T ss_dssp SCEEEEEEETTS------EEEEEETTTC--CEEEEEE---CCGGGCCEEEEEECTTSCEEEEEETT-----SCEEEEETT
T ss_pred CCCEEEEEeCCC------eEEEEeCCCC--eeeEEEc---cCCCCCceEEEEECCCCCEEEEEcCC-----CeEEEEEcC
Confidence 366777776542 7889999876 32 2222 1101112222333 234566667654 358899998
Q ss_pred CC
Q 042793 318 AK 319 (545)
Q Consensus 318 t~ 319 (545)
+.
T Consensus 245 ~~ 246 (437)
T 3gre_A 245 FN 246 (437)
T ss_dssp TT
T ss_pred Cc
Confidence 76
No 356
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=26.35 E-value=3.5e+02 Score=24.14 Aligned_cols=56 Identities=11% Similarity=0.026 Sum_probs=30.9
Q ss_pred CceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 257 NDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 257 ~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
..+++||+.+. +++.+. .+..+ ..++.. +++.||+..........+.+++||+...
T Consensus 169 ~~v~~~d~~~g--~~~~~~--~~~~p---~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 169 HSVYRLPPDGS--PLQRMA--DLDHP---NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp EEEEEECSSSC--CCEEEE--EESSE---EEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred CeEEEEcCCCC--cEEEEe--cCCCC---cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 47999999776 666553 22222 233332 3446888754221111257899998765
No 357
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=25.91 E-value=6.8e+02 Score=27.33 Aligned_cols=139 Identities=11% Similarity=0.060 Sum_probs=67.2
Q ss_pred CcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEE-EEecCCCCCceEEecCCCCCCC
Q 042793 309 NDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTF-LLDLSMEKPVWREIPVTWTPPS 387 (545)
Q Consensus 309 ~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~-~~d~~~~~~~W~~~~~~~~p~~ 387 (545)
..+++++..+. ....+... +..+..+.+.. ++..++..+. ...++ .+++.. .....+. ...
T Consensus 317 ~~i~~~~~~~~--~~~~~~~~--~~~~~~~~~~s-dg~~l~~~s~-------~~~l~~~~d~~~--~~~~~l~----~~~ 378 (1045)
T 1k32_A 317 GQAFIQDVSGT--YVLKVPEP--LRIRYVRRGGD-TKVAFIHGTR-------EGDFLGIYDYRT--GKAEKFE----ENL 378 (1045)
T ss_dssp TEEEEECTTSS--BEEECSCC--SCEEEEEECSS-SEEEEEEEET-------TEEEEEEEETTT--CCEEECC----CCC
T ss_pred CEEEEEcCCCC--ceEEccCC--CcceEEeeeEc-CCCeEEEEEC-------CCceEEEEECCC--CCceEec----CCc
Confidence 46888888776 55444322 11021112222 3434444332 13678 888653 3444443 111
Q ss_pred CCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEE
Q 042793 388 RLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRI 467 (545)
Q Consensus 388 r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l 467 (545)
.....++...+++.++++.. ...++.+|+. +.+-..+... ........+ ...+++.
T Consensus 379 ~~~~~~~~SpDG~~la~~~~---------~~~v~~~d~~--tg~~~~~~~~------------~~~~v~~~~-~SpDG~~ 434 (1045)
T 1k32_A 379 GNVFAMGVDRNGKFAVVAND---------RFEIMTVDLE--TGKPTVIERS------------REAMITDFT-ISDNSRF 434 (1045)
T ss_dssp CSEEEEEECTTSSEEEEEET---------TSEEEEEETT--TCCEEEEEEC------------SSSCCCCEE-ECTTSCE
T ss_pred cceeeeEECCCCCEEEEECC---------CCeEEEEECC--CCceEEeccC------------CCCCccceE-ECCCCCe
Confidence 12233333334455555543 2579999998 5555555322 111112222 2346776
Q ss_pred EEEcCcCC----CCCCCCceEEEcCC
Q 042793 468 LIFGGSVA----GLHSATQLYLLDPT 489 (545)
Q Consensus 468 ~v~GG~~~----~~~~~~~v~~~d~~ 489 (545)
+++++.+. .......++++|++
T Consensus 435 la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 435 IAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred EEEEecCccccccCCCCCeEEEEECC
Confidence 66665432 01123579999996
No 358
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=24.94 E-value=13 Score=30.48 Aligned_cols=51 Identities=10% Similarity=-0.097 Sum_probs=35.7
Q ss_pred HHhhhhhhhhccccc-----CCCcccCCCC-ccccccCcccc-hhhHHHHHhhccCCh
Q 042793 103 EFLKSSERQRSFFSG-----NRTFPIGDRN-VCREVCGIFQL-SDEVISLKILSWLSP 153 (545)
Q Consensus 103 ~~~~~~~r~~~~~~~-----~~~~~~g~~~-~~~~~~~~~~l-p~~~~~~~~~~~l~~ 153 (545)
++.+.+..++.++++ +..+.++... +|++.+.+.|+ ++|++|..+....|.
T Consensus 16 ~~~~~~~~l~~il~~~~~gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~ 73 (152)
T 3mxq_A 16 AMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPE 73 (152)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC
Confidence 344444455666653 5556677664 89999999999 688888777777765
No 359
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=24.27 E-value=5.8e+02 Score=25.97 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=47.7
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEE---EcCCEEEEEcCCCC------------
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSC---VNGSHLVVFGGCGR------------ 304 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~---~~~~~iyv~GG~~~------------ 304 (545)
+.++||--. ..+.+.++|+.+. +-.++- .+|....-|.++. -+++++|+.+-...
T Consensus 101 G~~lfVnd~------~~~rVavIdl~t~--~~~~ii--~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 101 GRFLFMNDK------ANTRVARVRCDVM--KCDAIL--EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEET------TTTEEEEEETTTT--EEEEEE--ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred CCEEEEEcC------CCCEEEEEECCCc--eEeeEE--eCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence 456887432 2347999999987 544432 3454445566664 35678888764321
Q ss_pred CcccCcEEEEecCCCCCceEec
Q 042793 305 QGLLNDVFVLDLDAKPPTWREI 326 (545)
Q Consensus 305 ~~~~~~~~~yd~~t~~~~W~~~ 326 (545)
..+.+.+-+.|.++....|+-.
T Consensus 171 ~~~~~~vtvID~~t~~v~~qI~ 192 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEVAWQVL 192 (595)
T ss_dssp GGEEEEEEEEETTTTEEEEEEE
T ss_pred cccCceEEEEECCCCeEEEEEE
Confidence 1245678899999886667643
No 360
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=24.11 E-value=3.9e+02 Score=23.91 Aligned_cols=154 Identities=10% Similarity=0.016 Sum_probs=76.7
Q ss_pred CCEEEEEcCCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEEcCCEEEEEcCCCCCcccCcEEEEecCCC
Q 042793 240 GNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAK 319 (545)
Q Consensus 240 ~~~lyv~GG~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 319 (545)
+++|||...... ...++++|..+. +.+.+. ..+..+.....+...++.+|+.-- ....+|++|+.+.
T Consensus 82 dG~l~vad~~~~----~~~v~~~d~~~g--~~~~~~--~~~~~~~~~g~~~~~~~~~~v~d~-----~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 82 NGDLVATGWNAD----SIPVVSLVKSDG--TVETLL--TLPDAIFLNGITPLSDTQYLTADS-----YRGAIWLIDVVQP 148 (306)
T ss_dssp TSCEEEEEECTT----SCEEEEEECTTS--CEEEEE--ECTTCSCEEEEEESSSSEEEEEET-----TTTEEEEEETTTT
T ss_pred CCcEEEEeccCC----cceEEEEcCCCC--eEEEEE--eCCCccccCcccccCCCcEEEEEC-----CCCeEEEEeCCCC
Confidence 466887653211 014888888776 666543 223344444444455567777532 1247899998764
Q ss_pred CC-ceEeccCCC--CCC-CCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCC-CC-ceEEecCCCCCCCCCCcEE
Q 042793 320 PP-TWREISGLA--PPL-PRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSME-KP-VWREIPVTWTPPSRLGHTL 393 (545)
Q Consensus 320 ~~-~W~~~~~~~--~~~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~-~~-~W~~~~~~~~p~~r~~~~~ 393 (545)
.. .|..-..+. .+. ..........+++.+|+.--. .+.+++|+++.. +. ....+.. .. .-..+
T Consensus 149 ~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~------~~~I~~~~~~~~g~~~~~~~~~~--~~---~P~gi 217 (306)
T 2p4o_A 149 SGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE------KMLLLRIPVDSTDKPGEPEIFVE--QT---NIDDF 217 (306)
T ss_dssp EEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT------TTEEEEEEBCTTSCBCCCEEEEE--SC---CCSSE
T ss_pred cEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCC------CCEEEEEEeCCCCCCCccEEEec--cC---CCCCe
Confidence 10 221111000 011 111112224556688986432 256899997531 10 1111111 11 11334
Q ss_pred EEECCcEEEEEcccCCCCCCccccCcEEEEeCC
Q 042793 394 SVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLS 426 (545)
Q Consensus 394 ~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~ 426 (545)
++-.++.+|+.-.. .+.|.+||+.
T Consensus 218 ~vd~dG~l~va~~~---------~~~V~~~~~~ 241 (306)
T 2p4o_A 218 AFDVEGNLYGATHI---------YNSVVRIAPD 241 (306)
T ss_dssp EEBTTCCEEEECBT---------TCCEEEECTT
T ss_pred EECCCCCEEEEeCC---------CCeEEEECCC
Confidence 44444578887542 3679999986
No 361
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=23.21 E-value=4.9e+02 Score=24.72 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=33.7
Q ss_pred cceEEEEecCCEEEEEcCcCCCCC----CCCceEEEc-CCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcCC
Q 042793 455 LDHVAVSLPGGRILIFGGSVAGLH----SATQLYLLD-PTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGGQ 527 (545)
Q Consensus 455 ~~~~~~~~~~~~l~v~GG~~~~~~----~~~~v~~~d-~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~ 527 (545)
..|+.++..++++|.+|-...+.- ...+...-. +. .-.....+.. -..|++++..++.||.+|-.
T Consensus 295 ~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~-~l~~v~~v~~-------G~~hs~alt~~G~v~~wG~n 364 (413)
T 1a12_A 295 QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS-RLPAVSSVAC-------GASVGYAVTKDGRVFAWGMG 364 (413)
T ss_dssp SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECC-SSSSEEEEEE-------CSSEEEEEETTSCEEEEECC
T ss_pred cceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEec-ccCceeEEEE-------CcceEEEEeCCCCEEEecCC
Confidence 457777777899999986331110 111111000 00 0012333321 23577777778999999843
No 362
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=22.89 E-value=2.7e+02 Score=24.06 Aligned_cols=52 Identities=13% Similarity=0.006 Sum_probs=35.1
Q ss_pred HHHHHHHH--cCCeEEEEEEeeecCCcceeEEEEEEEeecCCCCEEEEEEEeeeee
Q 042793 35 SEIRRCLE--EGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDETITHVIGIQFFTE 88 (545)
Q Consensus 35 ~~~~~~~~--~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~Dit 88 (545)
..+..++. .++.+-.+....+..|. |+..-..||.+.+|++.+++++..++.
T Consensus 99 ~~f~~a~~~~~~~~~is~p~~~~~~g~--~~i~~~~pi~~~~g~~~Gvl~~~i~l~ 152 (254)
T 3lif_A 99 SYFRYHRANDDHTLLITGPIQSRTSGV--WVFVVSRRLETTDGKFFGVVVATIESE 152 (254)
T ss_dssp HHHHHHHHCCCCCCEEEEEEECTTTCC--EEEEEEEEEECTTCCEEEEEEEEECHH
T ss_pred HHHHHHHhCCCCCeEECCceecCCCCc--EEEEEEeeeeCCCCCEeEEEEEEECHH
Confidence 34555555 45656666554445565 556667899998999988888776665
No 363
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=22.88 E-value=5.5e+02 Score=25.21 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=14.4
Q ss_pred cCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 463 PGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 463 ~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
.++++++.|+.+ ..+.+||..
T Consensus 477 pd~~~las~~~d------~~i~iw~~~ 497 (577)
T 2ymu_A 477 PDGQTIASASDD------KTVKLWNRN 497 (577)
T ss_dssp TTSCEEEEEETT------SEEEEEETT
T ss_pred CCCCEEEEEeCC------CEEEEEcCC
Confidence 467788877743 457788864
No 364
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=22.87 E-value=4.6e+02 Score=24.36 Aligned_cols=184 Identities=13% Similarity=0.163 Sum_probs=86.1
Q ss_pred cCcEEEEecC---CCCCceEe-ccCCCCCC-----C-Ccc-ceEEEE-cCCEEEEEcCCCCCCCccCcEEEEecCCCCC-
Q 042793 308 LNDVFVLDLD---AKPPTWRE-ISGLAPPL-----P-RSW-HSSCTL-DGTKLIVSGGCADSGVLLSDTFLLDLSMEKP- 374 (545)
Q Consensus 308 ~~~~~~yd~~---t~~~~W~~-~~~~~~~~-----~-r~~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~- 374 (545)
.+.+.+||+. |....|.. ++... .. + ++. ..-+++ ..+.+||.+... +..+++++.+....
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~-~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~-----~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQ-DEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG-----MPAIARVSADGKTVS 172 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHH-HHHHHHHSSCCEEEEEEEECTTSCEEEEEEES-----SCEEEEECTTSCCEE
T ss_pred CCEEEEEcCCcCCCCCEEEEecCcccc-ccccccccccccCCceeEECCCCCEEEeCCCC-----CCeEEEEeCCCCEEe
Confidence 3568999998 66556662 22110 00 0 211 122233 234799965431 14588888542211
Q ss_pred ceEEecCCCCCCCCCCc-EEEEEC-CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecC--CCCCCCCCCCCC
Q 042793 375 VWREIPVTWTPPSRLGH-TLSVYG-GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGS--GMPGAGNPGGIA 450 (545)
Q Consensus 375 ~W~~~~~~~~p~~r~~~-~~~~~~-~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~--~~~~~~~~~g~~ 450 (545)
.|-. .. +.+..+.+. .++... ++.|++..+ . ..+++||+.. ...| +++.. | . .+..
T Consensus 173 ~~~~-~~-~~~~~~~G~nGIv~~pdg~~Liv~~~-~---------g~L~~fD~~~-pv~~-~v~~~~~G-----~-~~~~ 232 (334)
T 2p9w_A 173 TFAW-ES-GNGGQRPGYSGITFDPHSNKLIAFGG-P---------RALTAFDVSK-PYAW-PEPVKING-----D-FGTL 232 (334)
T ss_dssp EEEE-CC-CCSSSCCSCSEEEEETTTTEEEEESS-S---------SSEEEEECSS-SSCC-CEECEESS-----C-CCCC
T ss_pred eeee-cC-CCcccccCcceEEEeCCCCEEEEEcC-C---------CeEEEEcCCC-Ccce-eecccccC-----C-cccc
Confidence 2432 21 122234333 444553 446666655 2 6789999872 2233 23211 1 0 0011
Q ss_pred CCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCCCCCCceEEeccCCCCCCC--CCCceeEEe----CCeeEEEE
Q 042793 451 PPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPTEEKPTWRILNVPGRPPRF--AWGHSTCVV----GGTRTIVL 524 (545)
Q Consensus 451 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~--r~~~~~~~~----~~~~l~i~ 524 (545)
..+ ..-...- .+++++++.-. .+.++.+--. .. |+.....+..|.. -.+.++.+. .+++||+.
T Consensus 233 ~~~-dgilp~~-~~G~vllV~~~------~~~~~~l~S~--Dg-W~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv 301 (334)
T 2p9w_A 233 SGT-EKIVTVP-VGNESVLVGAR------APYAISFRSW--DN-WKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAV 301 (334)
T ss_dssp TTE-EEEEEEE-ETTEEEEEEEE------TTEEEEEECS--ST-TSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEE
T ss_pred cCc-ccccccc-cCCEEEEEEcC------CCCEEEEECC--CC-cceeEEeeeecCccccCceeEEEEeccccCCeEEEE
Confidence 111 0101222 37888555432 1334444432 33 9887655544432 123344433 57999998
Q ss_pred cCCC
Q 042793 525 GGQT 528 (545)
Q Consensus 525 GG~~ 528 (545)
.++-
T Consensus 302 ~~~f 305 (334)
T 2p9w_A 302 SAFF 305 (334)
T ss_dssp ECCG
T ss_pred eeec
Confidence 7654
No 365
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=22.73 E-value=4.2e+02 Score=23.82 Aligned_cols=60 Identities=12% Similarity=0.250 Sum_probs=32.7
Q ss_pred cCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccC
Q 042793 256 MNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISG 328 (545)
Q Consensus 256 ~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~ 328 (545)
...+|++|+.+. +-+.+ .. ....... ++++|+...... ......++++|+.+. ....+..
T Consensus 42 ~~~l~~~d~~~~--~~~~l-------~~-~~~~~~SpDg~~la~~~~~~-~~~~~~l~~~~~~~g--~~~~l~~ 102 (347)
T 2gop_A 42 ENTIVIENLKNN--ARRFI-------EN-ATMPRISPDGKKIAFMRANE-EKKVSEIWVADLETL--SSKKILE 102 (347)
T ss_dssp EEEEEEEETTTC--CEEEE-------ES-CEEEEECTTSSEEEEEEEET-TTTEEEEEEEETTTT--EEEEEEE
T ss_pred cceEEEEeCCCC--ceEEc-------cc-CCCeEECCCCCEEEEEEecc-CCCcceEEEEECCCC--ceEEEEc
Confidence 457999998876 55544 11 1122222 454555443221 112346899999887 6666554
No 366
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=22.61 E-value=4.7e+02 Score=24.33 Aligned_cols=102 Identities=15% Similarity=0.091 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEECCcEEEEEcccCCCCCCccccCcEEEEe
Q 042793 345 GTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMD 424 (545)
Q Consensus 345 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~lyi~GG~~~~~~~~~~~~~i~~~d 424 (545)
+++.++.|+.+ ..+.++|+... +-...-. .....-.+++...++..++.|+. ...+..+|
T Consensus 134 dg~~l~s~~~d------~~i~iwd~~~~--~~~~~~~---~h~~~v~~~~~~p~~~~l~s~s~---------d~~v~iwd 193 (393)
T 1erj_A 134 DGKFLATGAED------RLIRIWDIENR--KIVMILQ---GHEQDIYSLDYFPSGDKLVSGSG---------DRTVRIWD 193 (393)
T ss_dssp TSSEEEEEETT------SCEEEEETTTT--EEEEEEC---CCSSCEEEEEECTTSSEEEEEET---------TSEEEEEE
T ss_pred CCCEEEEEcCC------CeEEEEECCCC--cEEEEEc---cCCCCEEEEEEcCCCCEEEEecC---------CCcEEEEE
Confidence 44666666643 35888896533 3322211 11111223333334355566654 25677789
Q ss_pred CCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEe-c-CCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 425 LSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSL-P-GGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 425 ~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~-~-~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
+. +.+....... . ....++.+ . ++++++.|+.+ ..+.+||+.
T Consensus 194 ~~--~~~~~~~~~~------------~---~~v~~~~~~~~~~~~l~~~s~d------~~v~iwd~~ 237 (393)
T 1erj_A 194 LR--TGQCSLTLSI------------E---DGVTTVAVSPGDGKYIAAGSLD------RAVRVWDSE 237 (393)
T ss_dssp TT--TTEEEEEEEC------------S---SCEEEEEECSTTCCEEEEEETT------SCEEEEETT
T ss_pred CC--CCeeEEEEEc------------C---CCcEEEEEECCCCCEEEEEcCC------CcEEEEECC
Confidence 87 4443322211 1 11222333 2 56788888754 458888986
No 367
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=22.54 E-value=3.7e+02 Score=23.11 Aligned_cols=156 Identities=14% Similarity=0.214 Sum_probs=72.9
Q ss_pred EEEcCCEEEEEcCCCCCcccCcEEEEecCCCCCce-EeccCCCCCCCCccceEEEE-cCCEEEEEcCCCCCCCccCcEEE
Q 042793 289 SCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTW-REISGLAPPLPRSWHSSCTL-DGTKLIVSGGCADSGVLLSDTFL 366 (545)
Q Consensus 289 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W-~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~ 366 (545)
+.+ .+++|+|=| +.+|.++.......- ..|...-+..|..--++... .++++|+|-|. ..|+
T Consensus 37 ~~~-~g~~~fFkg-------~~~Wr~~~~~~~~~~P~~I~~~wp~lp~~IDAA~~~~~~~k~yfFkG~--------~yW~ 100 (218)
T 1gen_A 37 AQI-RGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGN--------EYWI 100 (218)
T ss_dssp EEE-TTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSCSCCSEEEEETTTTEEEEEETT--------EEEE
T ss_pred EeC-CCcEEEEEC-------CEEEEEeCCCCccCCCEEHHHhcCCCCCCccEEEEECCCCEEEEEeCC--------EEEE
Confidence 334 558999876 245665543320011 12222111112222333333 34689999772 4788
Q ss_pred EecCCCCC--c-eEEecCCCCCCC--CCCcEEEEE-CCcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCC
Q 042793 367 LDLSMEKP--V-WREIPVTWTPPS--RLGHTLSVY-GGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGM 440 (545)
Q Consensus 367 ~d~~~~~~--~-W~~~~~~~~p~~--r~~~~~~~~-~~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~ 440 (545)
|+- .+. . =..+..-+.|.. ... ++... .++++|+|-| +..|+||.. +.+ +... -
T Consensus 101 y~~--~~~~~gyPk~I~~~g~p~~~~~ID-AAf~~~~~g~~YfFkG-----------~~ywr~d~~--~~~---v~~g-y 160 (218)
T 1gen_A 101 YSA--STLERGYPKPLTSLGLPPDVQRVD-AAFNWSKNKKTYIFAG-----------DKFWRYNEV--KKK---MDPG-F 160 (218)
T ss_dssp EET--TEECTTCSEEGGGGTCCTTCCCCS-EEEEETTTTEEEEEET-----------TEEEEEETT--TTE---ECSS-C
T ss_pred EcC--ccccCCCCccHhhcCCCCCcCCcc-EEEEEcCCCeEEEEEC-----------CEEEEEECc--ccc---ccCC-C
Confidence 872 100 0 012221123322 222 33332 4459999966 678999976 321 1100 0
Q ss_pred CCCCCCCCCCCCCCcceEEEEec-CCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 441 PGAGNPGGIAPPPRLDHVAVSLP-GGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 441 ~~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
|.... ..-...|..-.+++... ++++|+|-| +..|.||..
T Consensus 161 Pr~i~-~~w~g~p~~idaAf~~~~~g~~YfFkg--------~~y~~~~~~ 201 (218)
T 1gen_A 161 PKLIA-DAWNAIPDNLDAVVDLQGGGHSYFFKG--------AYYLKLENQ 201 (218)
T ss_dssp CEEHH-HHSSSCCSSCSEEEECTTTCEEEEEET--------TEEEEEETT
T ss_pred Ccchh-hccCCCCCCCCEEEEEcCCCcEEEEEC--------CEEEEEECC
Confidence 00000 00011222334555553 489999977 568889874
No 368
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=21.90 E-value=5.3e+02 Score=24.69 Aligned_cols=150 Identities=12% Similarity=0.080 Sum_probs=74.1
Q ss_pred CCEEEEEcCCCCCcccCcEEEEecCCCCCceEeccCCCCCCCCccceEEEEcCCEEEEEcCCCCCCCccCcEEEEecCCC
Q 042793 293 GSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSME 372 (545)
Q Consensus 293 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~~~W~~~~~~~~~~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 372 (545)
++.||+.--. +.+.++|+.++ ..+.+... ..+-.+-++..+++.+|+...... .....++.++....
T Consensus 149 ~g~Lyv~d~~------~~I~~id~~~~--~v~~~~~~---~~~P~~ia~d~~G~~lyvad~~~~--~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 149 HNHLYLVGEQ------HPTRLIDFEKE--YVSTVYSG---LSKVRTICWTHEADSMIITNDQNN--NDRPNNYILTRESG 215 (430)
T ss_dssp EEEEEEEEBT------EEEEEEETTTT--EEEEEECC---CSCEEEEEECTTSSEEEEEECCSC--TTSEEEEEEEGGGT
T ss_pred CCeEEEEeCC------CcEEEEECCCC--EEEEEecC---CCCcceEEEeCCCCEEEEEeCCCC--cccceEEEEeCCCc
Confidence 3578887431 57899999988 66665431 111111122224556999754221 11223555664221
Q ss_pred CCceEEecCCCCCCCCCCcEEEEEC-CcEEEEEcccCCCCCCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCC
Q 042793 373 KPVWREIPVTWTPPSRLGHTLSVYG-GRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAP 451 (545)
Q Consensus 373 ~~~W~~~~~~~~p~~r~~~~~~~~~-~~~lyi~GG~~~~~~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p 451 (545)
......+.. .. .-+.+++.. ++.||+..-. ...|++|++. +..-..+... +...
T Consensus 216 ~~~~~~l~~--~~---~p~giavdp~~g~lyv~d~~---------~~~V~~~~~~--~~~~~~~~~~---------~~~~ 270 (430)
T 3tc9_A 216 FKVITELTK--GQ---NCNGAETHPINGELYFNSWN---------AGQVFRYDFT--TQETTPLFTI---------QDSG 270 (430)
T ss_dssp SCSEEEEEE--CS---SCCCEEECTTTCCEEEEETT---------TTEEEEEETT--TTEEEEEEEC---------SSSS
T ss_pred eeeeeeecc--CC---CceEEEEeCCCCEEEEEECC---------CCEEEEEECC--CCcEEEEEEc---------CCCC
Confidence 111122221 11 224455544 4588887532 3679999997 4444333322 0011
Q ss_pred CCCcceEEEEecCCE-EEEEcCcCCCCCCCCceEEEcCC
Q 042793 452 PPRLDHVAVSLPGGR-ILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 452 ~~r~~~~~~~~~~~~-l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
.| .+.++. .+++ |||.-- ..+.|++++.+
T Consensus 271 ~P--~gia~~-pdG~~lyv~d~------~~~~I~~~~~d 300 (430)
T 3tc9_A 271 WE--FHIQFH-PSGNYAYIVVV------NQHYILRSDYD 300 (430)
T ss_dssp CC--EEEEEC-TTSSEEEEEET------TTTEEEEEEEE
T ss_pred cc--eeEEEc-CCCCEEEEEEC------CCCEEEEEeCC
Confidence 12 122222 2444 888743 23578887764
No 369
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=21.32 E-value=1.5e+02 Score=28.40 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=39.9
Q ss_pred CCEEEEEc---CCCCCCCccCceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCC-EEEEEcCCCCCcccCcEEEE
Q 042793 240 GNRVVLFG---GEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGS-HLVVFGGCGRQGLLNDVFVL 314 (545)
Q Consensus 240 ~~~lyv~G---G~~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~y 314 (545)
++++||.- +.......-+.++++|+.|. +-.. ..+.+..-.+++.- +++ .+|+.-+ ..+++.+|
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~--kv~~----~i~vg~~~~~lavs~D~~~~ly~tn~-----~~~~VsVi 359 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--ERLA----KFEMGHEIDSINVSQDEKPLLYALST-----GDKTLYIH 359 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTC--CEEE----EEEEEEEECEEEECSSSSCEEEEEET-----TTTEEEEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCC--eEEE----EEECCCCcceEEECCCCCeEEEEEcC-----CCCeEEEE
Confidence 67899963 22222234578999999876 3321 12222222344443 333 5676533 23679999
Q ss_pred ecCCC
Q 042793 315 DLDAK 319 (545)
Q Consensus 315 d~~t~ 319 (545)
|..+.
T Consensus 360 D~~t~ 364 (386)
T 3sjl_D 360 DAESG 364 (386)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 99988
No 370
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=21.29 E-value=7e+02 Score=25.84 Aligned_cols=178 Identities=11% Similarity=0.040 Sum_probs=80.4
Q ss_pred ceEEEeCCCCCCceEEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEEEecCCCCC--ceEeccCCCCCCC
Q 042793 258 DTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFVLDLDAKPP--TWREISGLAPPLP 334 (545)
Q Consensus 258 ~~~~~d~~t~~~~W~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~~--~W~~~~~~~~~~~ 334 (545)
.+.++++.+. ....+. +....-++++.- .+++||+.-- ....++++++.+... .-..+.......|
T Consensus 387 ~I~~id~~~~--~~~~~~----~~~~~p~gla~d~~~~~Ly~sD~-----~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P 455 (699)
T 1n7d_A 387 EVRKMTLDRS--EYTSLI----PNLRNVVALDTEVASNRIYWSDL-----SQRMICSTQLDRAHGVSSYDTVISRDIQAP 455 (699)
T ss_dssp C-CEECTTSC--CEECCS----CCCTTCCCCEEETTTTEEEECCT-----TTTSBEEEESCCCCC-CCCCCBCCSCC--C
T ss_pred ceEEEeCCCC--cceeee----ccCcceEEEccccccCeEEEEec-----CCCeEEEEecCCCCCCcceEEEEeCCCCCc
Confidence 5667777665 554332 111222344332 3458888632 124688898875100 1111111000112
Q ss_pred CccceEEEE--cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEecCCCCCCCCCCcEEEEE-CCcEEEEEcccCCCC
Q 042793 335 RSWHSSCTL--DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVY-GGRKILMFGGLAKSG 411 (545)
Q Consensus 335 r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~lyi~GG~~~~~ 411 (545)
. .+++ .++.||+.-.. .+.+++++++.. .-..+....+..|+ .+++. .++.||+..-..
T Consensus 456 ~----glavD~~~g~LY~tD~~------~~~I~v~d~dg~--~~~~l~~~~~~~P~---giavDp~~g~ly~td~~~--- 517 (699)
T 1n7d_A 456 D----GLAVDWIHSNIYWTDSV------LGTVSVADTKGV--KRKTLFREQGSKPR---AIVVDPVHGFMYWTDWGT--- 517 (699)
T ss_dssp C----CEECCCSSSBCEECCTT------TSCEEEEBSSSC--CEEEECCCSSCCCC---CEECCSSSSCCEECCCSS---
T ss_pred c----eEEEEeeCCcEEEEecc------CCeEEEEecCCC--ceEEEEeCCCCCcc---eEEEccCCCcEEEcccCC---
Confidence 1 1222 35588885321 245888886532 33333221222222 23332 234788754210
Q ss_pred CCccccCcEEEEeCCCCCCceEEeecCCCCCCCCCCCCCCCCCcceEEEEecCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 412 PLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 412 ~~~~~~~~i~~~d~~~~~~~W~~v~~~~~~~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
...|+++++. ...-+.+... .+..| ...++-..+++||+.-. ..+.|+++|++
T Consensus 518 -----~~~I~~~~~d--G~~~~~l~~~----------~l~~P--nGlavd~~~~~LY~aD~------~~~~I~~~d~d 570 (699)
T 1n7d_A 518 -----PAKIKKGGLN--GVDIYSLVTE----------NIQWP--NGITLDLLSGRLYWVDS------KLHSISSIDVN 570 (699)
T ss_dssp -----SCCEEBCCSS--SCCCCEESCS----------SCSSC--CCEEECTTTCCEEEEET------TTTEEEEECSS
T ss_pred -----CCeEEEEeCC--CCCeeEEEeC----------CCCCc--cEEEEeccCCEEEEEec------CCCeEEEEccC
Confidence 2578888876 3222222111 01112 11222223578988743 24679999996
No 371
>1so7_A Sialidase 2; neuraminidase, ganglioside, sugar-induced form; 1.49A {Homo sapiens} SCOP: b.68.1.1 PDB: 1snt_A 1vcu_A* 2f0z_A* 2f10_A* 2f11_A* 2f12_A* 2f13_A* 2f28_A 2f29_A* 2f24_A 2f25_A* 2f26_A 2f27_A*
Probab=21.05 E-value=1.9e+02 Score=27.44 Aligned_cols=54 Identities=6% Similarity=-0.036 Sum_probs=27.1
Q ss_pred CCceEeccCCCCCCCCccceEEEE---cCCEEEEEcCCCCCCCccCcEEEEecCCCCCceEEec
Q 042793 320 PPTWREISGLAPPLPRSWHSSCTL---DGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIP 380 (545)
Q Consensus 320 ~~~W~~~~~~~~~~~r~~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 380 (545)
..+|+....+ +..-..+..+.+ .+++++++..... ....+|.-.....+|+.+.
T Consensus 205 G~tW~~~~~~--~~~~~~~~~~~~~~~~dg~l~~~~r~~~-----g~~~v~~S~D~G~tW~~~~ 261 (382)
T 1so7_A 205 GRTWARGHFV--AQDTLECQVAEVETGEQRVVTLNARSHL-----RARVQAQSTNDGLDFQESQ 261 (382)
T ss_dssp TSSCEECCCC--SBSEEEEEEEEEEC--CEEEEEEEEESS-----SEEEEEEESSTTSSCCCCE
T ss_pred CceeEcCccc--CCCCCccEEEEEEECCCCEEEEEEecCC-----CCEEEEEEcCCCCCCCCCE
Confidence 3499987654 211122223334 4557887754321 1244454334466887654
No 372
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=21.00 E-value=5.4e+02 Score=24.43 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=33.3
Q ss_pred cceEEEEecCCEEEEEcC--cCCCC----CCCCceEEEcCCCCCCceEEeccCCCCCCCCCCceeEEeCCeeEEEEcC
Q 042793 455 LDHVAVSLPGGRILIFGG--SVAGL----HSATQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRTIVLGG 526 (545)
Q Consensus 455 ~~~~~~~~~~~~l~v~GG--~~~~~----~~~~~v~~~d~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG 526 (545)
..|++++..+++||..|- ...+. ...+...-..+. .......+. .-..|++++..++.||.+|-
T Consensus 136 ~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~-~~~~i~~va-------~G~~hs~alt~~G~v~~wG~ 205 (423)
T 3mvd_K 136 DSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLM-EGTVCCSIA-------SGADHLVILTTAGKVFTVGC 205 (423)
T ss_dssp SSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESS-TTCCEEEEE-------ECSSEEEEEETTSCEEEEEC
T ss_pred cCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEec-CCCcEEEEe-------cCCCeEEEEecCCeEEEeeC
Confidence 467777777899999984 11100 000000000010 112233332 22357888888899999993
No 373
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=21.00 E-value=31 Score=32.22 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=35.0
Q ss_pred CCcccCCCC-ccccccCcccc-hhhHHHHHhhccCChhhhhhHHHh
Q 042793 119 RTFPIGDRN-VCREVCGIFQL-SDEVISLKILSWLSPRDIASVGSV 162 (545)
Q Consensus 119 ~~~~~g~~~-~~~~~~~~~~l-p~~~~~~~~~~~l~~~~~~~~~~v 162 (545)
+.+.+|... ++++...++|+ |+|+++..++.++.++|+..+...
T Consensus 179 rh~~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~ 224 (317)
T 4dj3_A 179 THTPGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAI 224 (317)
T ss_dssp EECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHH
T ss_pred EecCCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHH
Confidence 345566664 89999999998 999999889999999998765443
No 374
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=20.68 E-value=3.9e+02 Score=26.97 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=14.6
Q ss_pred cCCEEEEEcCcCCCCCCCCceEEEcCC
Q 042793 463 PGGRILIFGGSVAGLHSATQLYLLDPT 489 (545)
Q Consensus 463 ~~~~l~v~GG~~~~~~~~~~v~~~d~~ 489 (545)
.++++++.|+.+ ..+..||+.
T Consensus 501 pdg~~las~s~d------~~v~~w~~~ 521 (611)
T 1nr0_A 501 NNGAFLVATDQS------RKVIPYSVA 521 (611)
T ss_dssp TTSSEEEEEETT------SCEEEEEGG
T ss_pred CCCCEEEEEcCC------CCEEEEEcC
Confidence 467777777754 457888875
No 375
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=20.22 E-value=3.3e+02 Score=25.24 Aligned_cols=65 Identities=14% Similarity=0.291 Sum_probs=37.8
Q ss_pred CCEEEEEcCCC----CCCCccCceEEEeCCCCCCce-EEeccCCCCCCccceeEEEE-cCCEEEEEcCCCCCcccCcEEE
Q 042793 240 GNRVVLFGGEG----VNMQPMNDTFVLDLNSSNPEW-QHVHVSSPPPGRWGHTLSCV-NGSHLVVFGGCGRQGLLNDVFV 313 (545)
Q Consensus 240 ~~~lyv~GG~~----~~~~~~~~~~~~d~~t~~~~W-~~~~~~~~~~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 313 (545)
++++|+....+ ......+.++++|+.+. +- ..++ .+. -+.++.. ++++||+.++ +.+.+
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--~~v~~i~-----~~~-p~~ia~spdg~~l~v~n~-------~~v~v 329 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--QRVARIP-----GRD-ALSMTIDQQRNLMLTLDG-------GNVNV 329 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--EEEEEEE-----CTT-CCEEEEETTTTEEEEECS-------SCEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCC--cEEEEEe-----cCC-eeEEEECCCCCEEEEeCC-------CeEEE
Confidence 57899875311 11123458999999876 32 2222 222 3444433 5667776552 67999
Q ss_pred EecCCC
Q 042793 314 LDLDAK 319 (545)
Q Consensus 314 yd~~t~ 319 (545)
||..+.
T Consensus 330 ~D~~t~ 335 (361)
T 2oiz_A 330 YDISQP 335 (361)
T ss_dssp EECSSS
T ss_pred EECCCC
Confidence 998765
Done!