Query 042795
Match_columns 122
No_of_seqs 176 out of 1377
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 09:35:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158 Cytochrome P450 CYP3/C 100.0 1.4E-32 3E-37 203.0 10.7 114 1-117 386-499 (499)
2 KOG0157 Cytochrome P450 CYP4/C 100.0 3E-31 6.5E-36 197.8 11.0 112 1-117 384-496 (497)
3 PLN02169 fatty acid (omega-1)- 100.0 4.8E-31 1E-35 196.8 11.0 111 1-116 387-499 (500)
4 PLN02183 ferulate 5-hydroxylas 100.0 6.1E-31 1.3E-35 196.8 10.6 120 1-120 395-515 (516)
5 PLN03234 cytochrome P450 83B1; 100.0 6.7E-31 1.5E-35 195.6 10.4 116 1-116 380-498 (499)
6 PLN03195 fatty acid omega-hydr 100.0 1.3E-30 2.9E-35 194.9 11.2 112 1-117 404-516 (516)
7 PLN02394 trans-cinnamate 4-mon 100.0 2.7E-30 5.9E-35 192.5 11.2 115 1-117 385-502 (503)
8 PLN02426 cytochrome P450, fami 100.0 6.5E-30 1.4E-34 190.9 11.5 114 1-117 386-500 (502)
9 PLN02738 carotene beta-ring hy 100.0 7.7E-30 1.7E-34 194.6 12.0 114 1-118 481-596 (633)
10 KOG0156 Cytochrome P450 CYP2 s 100.0 4.3E-30 9.4E-35 190.6 9.9 111 1-117 378-488 (489)
11 PLN02966 cytochrome P450 83A1 100.0 4.9E-30 1.1E-34 191.3 10.2 115 1-117 383-498 (502)
12 PLN02687 flavonoid 3'-monooxyg 100.0 6.1E-30 1.3E-34 191.4 10.7 117 1-117 389-509 (517)
13 PLN00168 Cytochrome P450; Prov 100.0 7.8E-30 1.7E-34 190.9 11.2 115 1-118 399-518 (519)
14 PLN02971 tryptophan N-hydroxyl 100.0 5.7E-30 1.2E-34 192.6 9.9 115 1-118 419-535 (543)
15 PLN02290 cytokinin trans-hydro 100.0 7.9E-30 1.7E-34 190.6 10.6 110 1-118 406-516 (516)
16 PTZ00404 cytochrome P450; Prov 100.0 8.6E-30 1.9E-34 189.0 10.4 107 1-116 376-482 (482)
17 PLN00110 flavonoid 3',5'-hydro 100.0 8E-30 1.7E-34 190.4 10.0 114 1-117 381-497 (504)
18 PLN03112 cytochrome P450 famil 100.0 2.3E-29 5.1E-34 188.0 10.5 118 1-118 388-509 (514)
19 PLN02655 ent-kaurene oxidase 100.0 2.9E-29 6.3E-34 185.7 10.8 112 1-117 353-464 (466)
20 PLN02500 cytochrome P450 90B1 100.0 2.1E-29 4.4E-34 187.5 9.4 108 1-115 375-488 (490)
21 PF00067 p450: Cytochrome P450 100.0 1.2E-29 2.6E-34 184.1 7.7 88 1-88 354-441 (463)
22 PLN03141 3-epi-6-deoxocathaste 100.0 2.7E-29 5.8E-34 185.3 9.3 107 1-119 346-452 (452)
23 PLN02774 brassinosteroid-6-oxi 100.0 5.7E-29 1.2E-33 184.1 9.5 105 1-115 358-462 (463)
24 PLN02936 epsilon-ring hydroxyl 100.0 1.7E-28 3.7E-33 182.6 11.5 113 1-118 369-483 (489)
25 PLN03018 homomethionine N-hydr 100.0 1.5E-28 3.2E-33 184.7 11.2 114 1-117 406-524 (534)
26 KOG0159 Cytochrome P450 CYP11/ 100.0 1.4E-28 3.1E-33 180.2 9.7 111 1-117 408-518 (519)
27 PLN02987 Cytochrome P450, fami 100.0 2.1E-28 4.5E-33 181.6 10.7 110 1-118 361-470 (472)
28 PLN02302 ent-kaurenoic acid ox 100.0 1.8E-28 3.8E-33 182.0 9.6 107 1-117 382-488 (490)
29 PLN02196 abscisic acid 8'-hydr 100.0 2.7E-28 5.8E-33 180.5 9.0 105 1-116 358-462 (463)
30 KOG0684 Cytochrome P450 [Secon 99.9 1.1E-26 2.3E-31 167.7 8.5 112 2-117 370-485 (486)
31 COG2124 CypX Cytochrome P450 [ 99.9 8E-24 1.7E-28 154.9 7.7 77 1-87 311-387 (411)
32 PLN02648 allene oxide synthase 99.9 2.2E-23 4.7E-28 155.1 7.6 85 1-88 369-463 (480)
33 PF08492 SRP72: SRP72 RNA-bind 74.4 2.5 5.4E-05 22.8 1.6 8 31-38 44-51 (59)
34 PF09201 SRX: SRX; InterPro: 66.1 6.6 0.00014 25.0 2.3 22 58-79 19-40 (148)
35 cd04518 TBP_archaea archaeal T 53.6 7.7 0.00017 25.6 1.2 35 28-62 29-63 (174)
36 PF12444 Sox_N: Sox developmen 53.5 10 0.00023 21.9 1.6 20 67-86 60-79 (84)
37 COG2101 SPT15 TATA-box binding 52.3 6 0.00013 26.2 0.5 36 28-63 35-70 (185)
38 PRK00394 transcription factor; 50.2 9.4 0.0002 25.3 1.2 34 28-61 28-61 (179)
39 PRK14759 potassium-transportin 49.4 7.2 0.00016 17.8 0.4 6 30-35 24-29 (29)
40 cd00652 TBP_TLF TATA box bindi 48.4 23 0.0005 23.3 2.8 34 28-61 29-62 (174)
41 KOG3302 TATA-box binding prote 48.4 8.2 0.00018 26.0 0.7 34 28-61 50-83 (200)
42 cd04516 TBP_eukaryotes eukaryo 48.2 15 0.00032 24.3 1.9 56 28-83 29-86 (174)
43 PF09604 Potass_KdpF: F subuni 45.2 9.2 0.0002 16.8 0.4 6 30-35 20-25 (25)
44 PF00352 TBP: Transcription fa 44.8 18 0.00039 20.7 1.7 35 28-62 31-65 (86)
45 PLN00062 TATA-box-binding prot 42.5 13 0.00028 24.7 0.9 55 28-82 29-85 (179)
46 KOG3506 40S ribosomal protein 40.5 12 0.00026 19.8 0.4 10 51-60 13-22 (56)
47 PF02663 FmdE: FmdE, Molybdenu 31.5 45 0.00097 20.6 2.1 22 56-77 4-25 (131)
48 TIGR02115 potass_kdpF K+-trans 31.4 11 0.00024 16.7 -0.5 7 30-36 19-25 (26)
49 PHA03162 hypothetical protein; 30.4 35 0.00075 21.5 1.4 24 53-76 2-25 (135)
50 PF01629 DUF22: Domain of unkn 28.8 45 0.00097 20.4 1.6 33 3-35 63-95 (112)
51 PF07886 BA14K: BA14K-like pro 23.2 82 0.0018 14.6 1.6 16 45-60 16-31 (31)
52 PF14510 ABC_trans_N: ABC-tran 22.7 24 0.00052 20.1 -0.3 19 19-37 23-41 (85)
53 KOG1939 Oxoprolinase [Amino ac 22.3 37 0.0008 28.3 0.5 56 31-86 458-517 (1247)
54 COG0794 GutQ Predicted sugar p 21.7 52 0.0011 22.4 1.1 27 47-73 40-66 (202)
55 PF12508 DUF3714: Protein of u 20.5 53 0.0011 22.3 0.9 12 1-12 83-94 (200)
No 1
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-32 Score=202.97 Aligned_cols=114 Identities=29% Similarity=0.473 Sum_probs=99.0
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhHhc
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLYHF 80 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~~f 80 (122)
|+.|+||+.|+++.|++||||++||||++|+||||++.+.+ ...+..|+|||.|+|.|+|++||++|+|+.++.||++|
T Consensus 386 ~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~-~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f 464 (499)
T KOG0158|consen 386 GFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEEENNK-SRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNF 464 (499)
T ss_pred CeEeCCCCEEEeecccccCCcccCCCcccCCCccCCCCccc-ccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhC
Confidence 57899999999999999999999999999999999977644 45678999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCC
Q 042795 81 DWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYH 117 (122)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 117 (122)
+++..+.+... ......+.++.|++++++++++|+
T Consensus 465 ~~~~~~~t~~~--~~~~~~~~~l~pk~gi~Lkl~~r~ 499 (499)
T KOG0158|consen 465 SFEVCPTTIIP--LEGDPKGFTLSPKGGIWLKLEPRD 499 (499)
T ss_pred EEecCCcccCc--ccCCccceeeecCCceEEEEEeCC
Confidence 99987743322 222233778899999999999984
No 2
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.97 E-value=3e-31 Score=197.81 Aligned_cols=112 Identities=31% Similarity=0.472 Sum_probs=99.5
Q ss_pred CCccCCCCEEEecchhhcCCCCCCC-CCCCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhHh
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWT-EPERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLYH 79 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~-~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~~ 79 (122)
||.||||+.|++++|++|||+.+|+ ||++|+||||+++......+++.|+|||+|+|.|+|++||++||+++++.|+++
T Consensus 384 g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~ 463 (497)
T KOG0157|consen 384 GYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRR 463 (497)
T ss_pred CcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCccccCCCCCcccchhHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999997 999999999997544334457899999999999999999999999999999999
Q ss_pred ceeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCC
Q 042795 80 FDWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYH 117 (122)
Q Consensus 80 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 117 (122)
|+|++..+.. .......++++++++.|++++|.
T Consensus 464 f~~~~~~~~~-----~~~~~~~~l~~~~gl~v~~~~r~ 496 (497)
T KOG0157|consen 464 FRIEPVGGDK-----PKPVPELTLRPKNGLKVKLRPRG 496 (497)
T ss_pred eEEEecCCCC-----ceeeeEEEEEecCCeEEEEEeCC
Confidence 9999876532 34456888999999999999986
No 3
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.97 E-value=4.8e-31 Score=196.81 Aligned_cols=111 Identities=20% Similarity=0.402 Sum_probs=95.0
Q ss_pred CCccCCCCEEEecchhhcCCCCCC-CCCCCcCCCCcCCCCCCCC-CCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhH
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYW-TEPERFIPDRFLECSIDYK-GNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLY 78 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~-~~p~~F~P~R~l~~~~~~~-~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~ 78 (122)
||.|||||.|++++|++||||++| +||++|+||||++++.... ..+..|+|||+|+|.|+|++||++|++++++.|++
T Consensus 387 G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll~ 466 (500)
T PLN02169 387 GHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIK 466 (500)
T ss_pred CEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999 8999999999997543211 23678999999999999999999999999999999
Q ss_pred hceeecCCCCCCCCcccccceeeEEecCCCeEEEEEeC
Q 042795 79 HFDWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLY 116 (122)
Q Consensus 79 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R 116 (122)
+|++++.++.. + ......++++++++.+++++|
T Consensus 467 ~f~~~~~~~~~---~--~~~~~~~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 467 NYDFKVIEGHK---I--EAIPSILLRMKHGLKVTVTKK 499 (500)
T ss_pred HCEEEEcCCCC---c--ccccceEEecCCCEEEEEEeC
Confidence 99998865431 2 223457788999999999987
No 4
>PLN02183 ferulate 5-hydroxylase
Probab=99.97 E-value=6.1e-31 Score=196.76 Aligned_cols=120 Identities=38% Similarity=0.788 Sum_probs=97.2
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCC-CCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhHh
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSID-YKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLYH 79 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~-~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~~ 79 (122)
||.|||||.|.++.|++||||++|+||++|+||||++++.. .......++|||+|+|.|+|+++|++|+++++|.|+++
T Consensus 395 g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~ 474 (516)
T PLN02183 395 GYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHC 474 (516)
T ss_pred CEEECCCCEEEEehhhhcCCccccCCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHhe
Confidence 79999999999999999999999999999999999975432 12345689999999999999999999999999999999
Q ss_pred ceeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCCCCC
Q 042795 80 FDWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYHPSP 120 (122)
Q Consensus 80 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~~~ 120 (122)
|++++.++...........++.+.....++.+.+++|-.++
T Consensus 475 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 515 (516)
T PLN02183 475 FTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYRLQCP 515 (516)
T ss_pred eEEEcCCCCCCCCCChhhccccccccCCCcEEEeecCCCCC
Confidence 99998776432223333344555445558888888886554
No 5
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.97 E-value=6.7e-31 Score=195.64 Aligned_cols=116 Identities=36% Similarity=0.796 Sum_probs=98.7
Q ss_pred CCccCCCCEEEecchhhcCCCCCC-CCCCCcCCCCcCCCCCC--CCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHh
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYW-TEPERFIPDRFLECSID--YKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLL 77 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~-~~p~~F~P~R~l~~~~~--~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll 77 (122)
||.|||||.|.++.|++||||++| +||++|+||||+++... .+.....++|||+|+|.|+|+++|++|+++++|.|+
T Consensus 380 g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll 459 (499)
T PLN03234 380 GYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLL 459 (499)
T ss_pred CEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 789999999999999999999999 89999999999975432 123466899999999999999999999999999999
Q ss_pred HhceeecCCCCCCCCcccccceeeEEecCCCeEEEEEeC
Q 042795 78 YHFDWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLY 116 (122)
Q Consensus 78 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R 116 (122)
++|++++.++..+..+......++...+++.+.+.+++|
T Consensus 460 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
T PLN03234 460 YKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKH 498 (499)
T ss_pred HheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecC
Confidence 999999987644444555556677777888888888766
No 6
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.97 E-value=1.3e-30 Score=194.85 Aligned_cols=112 Identities=21% Similarity=0.356 Sum_probs=93.5
Q ss_pred CCccCCCCEEEecchhhcCCCCCC-CCCCCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhHh
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYW-TEPERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLYH 79 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~~ 79 (122)
||.|||||.|.++.|++||||++| +||++|+||||++++......+..++|||+|+|.|+|++||++|++++++.|+++
T Consensus 404 G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~ 483 (516)
T PLN03195 404 GTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRF 483 (516)
T ss_pred CcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999999999 9999999999996432112345679999999999999999999999999999999
Q ss_pred ceeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCC
Q 042795 80 FDWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYH 117 (122)
Q Consensus 80 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 117 (122)
|++++.++. .. ......++.++.++.|++++|.
T Consensus 484 f~~~~~~~~---~~--~~~~~~~~~~~~~~~v~~~~r~ 516 (516)
T PLN03195 484 FKFQLVPGH---PV--KYRMMTILSMANGLKVTVSRRS 516 (516)
T ss_pred ceeEecCCC---cc--eeeeeeEEecCCCEEEEEEeCC
Confidence 999986543 11 2223455678899999999874
No 7
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.97 E-value=2.7e-30 Score=192.55 Aligned_cols=115 Identities=30% Similarity=0.590 Sum_probs=95.0
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCC--CCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhH
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSID--YKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLY 78 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~--~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~ 78 (122)
||.|||||.|.++.|++||||++|+||++|+||||++++.. .......++|||+|+|.|+|+++|++|+++++|.|++
T Consensus 385 g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~ 464 (503)
T PLN02394 385 GYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQ 464 (503)
T ss_pred CEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999965421 1224568999999999999999999999999999999
Q ss_pred hceeecCCCCCCCCccccccee-eEEecCCCeEEEEEeCC
Q 042795 79 HFDWTLPNEMKHEDLDMTETFS-VGIRTKDDMYIIPTLYH 117 (122)
Q Consensus 79 ~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~R~ 117 (122)
+|++++.++.. .++....++ ..+..+.++.+++.+|.
T Consensus 465 ~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~r~ 502 (503)
T PLN02394 465 NFELLPPPGQS--KIDVSEKGGQFSLHIAKHSTVVFKPRS 502 (503)
T ss_pred HceeEeCCCCC--cCccccccCceeeccCCCceEEeecCC
Confidence 99999876542 233343443 44545669999999985
No 8
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.97 E-value=6.5e-30 Score=190.85 Aligned_cols=114 Identities=22% Similarity=0.307 Sum_probs=95.3
Q ss_pred CCccCCCCEEEecchhhcCCCCCC-CCCCCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhHh
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYW-TEPERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLYH 79 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~~ 79 (122)
||.|||||.|.++.|++||||++| +||++|+||||++++......+..++|||+|+|.|+|+++|++|++++++.|+++
T Consensus 386 G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~ 465 (502)
T PLN02426 386 GTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRR 465 (502)
T ss_pred CcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999 9999999999997432112345678999999999999999999999999999999
Q ss_pred ceeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCC
Q 042795 80 FDWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYH 117 (122)
Q Consensus 80 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 117 (122)
|++++.++.. . ......+.++++++++.|++++|.
T Consensus 466 f~~~~~~~~~-~--~~~~~~~~~~~~~~gl~v~~~~r~ 500 (502)
T PLN02426 466 FDIEVVGRSN-R--APRFAPGLTATVRGGLPVRVRERV 500 (502)
T ss_pred ceEEEecCCC-C--CCcccceeEEecCCCEEEEEEEcc
Confidence 9999864321 1 112233577889999999999885
No 9
>PLN02738 carotene beta-ring hydroxylase
Probab=99.97 E-value=7.7e-30 Score=194.56 Aligned_cols=114 Identities=26% Similarity=0.471 Sum_probs=95.6
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCC--CCCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhH
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSI--DYKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLY 78 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~--~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~ 78 (122)
||.|||||.|.++.|.+||||++|+||++|+||||+.+.. .....+..++|||.|+|.|+|++||++|++++++.|++
T Consensus 481 gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El~l~LA~Llr 560 (633)
T PLN02738 481 GYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAMLVR 560 (633)
T ss_pred CEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999985321 11234568999999999999999999999999999999
Q ss_pred hceeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCCC
Q 042795 79 HFDWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYHP 118 (122)
Q Consensus 79 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~ 118 (122)
+|+|++..+.. .+ ......++.+++++++++++|..
T Consensus 561 ~F~~el~~~~~--~~--~~~~~~~~~p~~~l~v~l~~R~~ 596 (633)
T PLN02738 561 RFDFQLAPGAP--PV--KMTTGATIHTTEGLKMTVTRRTK 596 (633)
T ss_pred hCeeEeCCCCC--Cc--ccccceEEeeCCCcEEEEEECCC
Confidence 99999876542 12 22235667788899999999964
No 10
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=4.3e-30 Score=190.64 Aligned_cols=111 Identities=43% Similarity=0.809 Sum_probs=95.1
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhHhc
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLYHF 80 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~~f 80 (122)
||+|||||.|+++.|++||||++|+||++|+||||++.+ +.+.....++|||.|+|.|+|..+|++++.++++.|+++|
T Consensus 378 Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~-d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~F 456 (489)
T KOG0156|consen 378 GYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSN-DGKGLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQRF 456 (489)
T ss_pred CEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCc-cccCCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHhee
Confidence 899999999999999999999999999999999999875 2234678999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCC
Q 042795 81 DWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYH 117 (122)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 117 (122)
+|++..+ .++.... +.++..+.++.+...+|.
T Consensus 457 ~w~~~~~----~~d~~e~-~~~~~~~~pl~~~~~~r~ 488 (489)
T KOG0156|consen 457 DWKLPGG----KVDMEEA-GLTLKKKKPLKAVPVPRL 488 (489)
T ss_pred eeecCCC----CCCCccc-ccceecCCcceeeeecCC
Confidence 9998866 2233344 366667778887777663
No 11
>PLN02966 cytochrome P450 83A1
Probab=99.96 E-value=4.9e-30 Score=191.30 Aligned_cols=115 Identities=37% Similarity=0.793 Sum_probs=92.6
Q ss_pred CCccCCCCEEEecchhhcCCCCCC-CCCCCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhHh
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYW-TEPERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLYH 79 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~~ 79 (122)
||.|||||.|.++.|++||||++| +||++|+||||++.+.........++|||+|+|.|+|++||++|+++++|.|+++
T Consensus 383 g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~~ 462 (502)
T PLN02966 383 GYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLN 462 (502)
T ss_pred cEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999 9999999999996543222345689999999999999999999999999999999
Q ss_pred ceeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCC
Q 042795 80 FDWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYH 117 (122)
Q Consensus 80 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 117 (122)
|++++.++...+.++.....++...++..+ ++.+|+
T Consensus 463 f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 498 (502)
T PLN02966 463 FNFKLPNGMKPDDINMDVMTGLAMHKSQHL--KLVPEK 498 (502)
T ss_pred ceeeCCCCCCcccCCcccccCeeeccCCCe--EEEEEe
Confidence 999988765444454445556555444344 455543
No 12
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.96 E-value=6.1e-30 Score=191.42 Aligned_cols=117 Identities=35% Similarity=0.701 Sum_probs=96.5
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCC----CCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHH
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSID----YKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVL 76 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~----~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~l 76 (122)
||.|||||.|.++.|++||||++|+||++|+||||++.+.. ....+..++|||+|+|.|+|++||++|++++++.|
T Consensus 389 g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~l 468 (517)
T PLN02687 389 GYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATL 468 (517)
T ss_pred CEEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999975321 12235679999999999999999999999999999
Q ss_pred hHhceeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCC
Q 042795 77 LYHFDWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYH 117 (122)
Q Consensus 77 l~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 117 (122)
+++|++++.++.....+...........+..++.+++++|.
T Consensus 469 l~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 509 (517)
T PLN02687 469 VHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVHPRPRL 509 (517)
T ss_pred HHhcceecCCCCCcccCCcccccceeeecCCCeEEeeccCC
Confidence 99999998765432233333344566667778999999885
No 13
>PLN00168 Cytochrome P450; Provisional
Probab=99.96 E-value=7.8e-30 Score=190.92 Aligned_cols=115 Identities=23% Similarity=0.403 Sum_probs=94.7
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCC----C-CCCCceeeeecCcCCCCcCHHHHHHHHHHHHHH
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSID----Y-KGNNFEYIPFGAGRRICPGISFADAIMKLSLVV 75 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~----~-~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ 75 (122)
||.|||||.|.++.|++||||++|+||++|+||||++.... . ......++|||+|+|.|+|++||++|++++++.
T Consensus 399 g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ 478 (519)
T PLN00168 399 GYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVAN 478 (519)
T ss_pred CEEECCCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999964221 0 123457999999999999999999999999999
Q ss_pred HhHhceeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCCC
Q 042795 76 LLYHFDWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYHP 118 (122)
Q Consensus 76 ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~ 118 (122)
|+++|+|++.++.. ++......++..+++++.+++++|+.
T Consensus 479 ll~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~R~~ 518 (519)
T PLN00168 479 MVREFEWKEVPGDE---VDFAEKREFTTVMAKPLRARLVPRRT 518 (519)
T ss_pred HHHHccceeCCCCc---CChhhhceeEEeecCCcEEEEEeccC
Confidence 99999999876532 22222234566677789999999863
No 14
>PLN02971 tryptophan N-hydroxylase
Probab=99.96 E-value=5.7e-30 Score=192.59 Aligned_cols=115 Identities=24% Similarity=0.506 Sum_probs=94.8
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCC--CCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhH
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSID--YKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLY 78 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~--~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~ 78 (122)
||.|||||.|+++.|++||||++|+||++|+||||+++..+ ....+..++|||+|+|.|+|++||+.|++++++.|++
T Consensus 419 G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~ 498 (543)
T PLN02971 419 GYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQ 498 (543)
T ss_pred CEEECCCCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999975322 1224567999999999999999999999999999999
Q ss_pred hceeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCCC
Q 042795 79 HFDWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYHP 118 (122)
Q Consensus 79 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~ 118 (122)
+|+|++.++.. ..+....++ ++..++++.+.+++|-+
T Consensus 499 ~f~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~ 535 (543)
T PLN02971 499 GFKWKLAGSET--RVELMESSH-DMFLSKPLVMVGELRLS 535 (543)
T ss_pred hCEEEeCCCCC--CcchhhhcC-cccccccceeeeeecCC
Confidence 99999876542 234444455 55445588999988843
No 15
>PLN02290 cytokinin trans-hydroxylase
Probab=99.96 E-value=7.9e-30 Score=190.61 Aligned_cols=110 Identities=24% Similarity=0.427 Sum_probs=94.2
Q ss_pred CCccCCCCEEEecchhhcCCCCCC-CCCCCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhHh
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYW-TEPERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLYH 79 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~~ 79 (122)
||.|||||.|+++.|++||||++| +||++|+||||++.. ......++|||.|+|.|+|+++|++|++++++.|+++
T Consensus 406 g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~---~~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~~ 482 (516)
T PLN02290 406 DLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRP---FAPGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLISK 482 (516)
T ss_pred CEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCC---CCCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999 799999999999532 1234579999999999999999999999999999999
Q ss_pred ceeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCCC
Q 042795 80 FDWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYHP 118 (122)
Q Consensus 80 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~ 118 (122)
|++++.++.. .......++.|++++.+++++|.+
T Consensus 483 f~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~~~ 516 (516)
T PLN02290 483 FSFTISDNYR-----HAPVVVLTIKPKYGVQVCLKPLNP 516 (516)
T ss_pred ceEeeCCCcc-----cCccceeeecCCCCCeEEEEeCCC
Confidence 9999876531 111235778899999999999864
No 16
>PTZ00404 cytochrome P450; Provisional
Probab=99.96 E-value=8.6e-30 Score=189.02 Aligned_cols=107 Identities=26% Similarity=0.527 Sum_probs=90.5
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhHhc
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLYHF 80 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~~f 80 (122)
||.|||||.|.++.|++||||++|+||++|+||||++.. ....++|||+|+|.|+|+++|++|++++++.|+++|
T Consensus 376 g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~-----~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f 450 (482)
T PTZ00404 376 GHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD-----SNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNF 450 (482)
T ss_pred CeEECCCCEEEeeHHHhhCCccccCCccccCccccCCCC-----CCCceeccCCCCCCCccHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999999998642 356899999999999999999999999999999999
Q ss_pred eeecCCCCCCCCcccccceeeEEecCCCeEEEEEeC
Q 042795 81 DWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLY 116 (122)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R 116 (122)
++++.++.. .......+++++ +.++.+++++|
T Consensus 451 ~~~~~~~~~---~~~~~~~~~~~~-~~~~~v~~~~R 482 (482)
T PTZ00404 451 KLKSIDGKK---IDETEEYGLTLK-PNKFKVLLEKR 482 (482)
T ss_pred EEecCCCCC---CCcccccceeec-CCCceeeeecC
Confidence 998865431 112223455566 56899999876
No 17
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.96 E-value=8e-30 Score=190.39 Aligned_cols=114 Identities=37% Similarity=0.690 Sum_probs=95.7
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCCCC---CCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHh
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSIDYK---GNNFEYIPFGAGRRICPGISFADAIMKLSLVVLL 77 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~---~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll 77 (122)
||.|||||.|.++.|++|+||++|+||++|+||||+++..... .....++|||+|+|.|+|+++|++|++++++.|+
T Consensus 381 g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll 460 (504)
T PLN00110 381 GYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLV 460 (504)
T ss_pred CEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999996532111 1235799999999999999999999999999999
Q ss_pred HhceeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCC
Q 042795 78 YHFDWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYH 117 (122)
Q Consensus 78 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 117 (122)
++|++++.++. ........+.++.++.++.+++++|.
T Consensus 461 ~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~ 497 (504)
T PLN00110 461 HSFDWKLPDGV---ELNMDEAFGLALQKAVPLSAMVTPRL 497 (504)
T ss_pred HhceeecCCCC---ccCcccccccccccCCCceEeeccCC
Confidence 99999987653 22222345677788889999999985
No 18
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.96 E-value=2.3e-29 Score=188.01 Aligned_cols=118 Identities=27% Similarity=0.571 Sum_probs=97.9
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCC---C-CCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHH
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSID---Y-KGNNFEYIPFGAGRRICPGISFADAIMKLSLVVL 76 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~---~-~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~l 76 (122)
||.|||||.|.++.|++||||++|+||++|+||||+.+... . ...+..++|||.|+|.|+|+++|++|++++++.|
T Consensus 388 g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~l 467 (514)
T PLN03112 388 GYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARL 467 (514)
T ss_pred CEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999997653211 0 1234679999999999999999999999999999
Q ss_pred hHhceeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCCC
Q 042795 77 LYHFDWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYHP 118 (122)
Q Consensus 77 l~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~ 118 (122)
+++|++++..+....++......++.+.+.+++.+++.+|..
T Consensus 468 l~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 509 (514)
T PLN03112 468 FHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVATPRLA 509 (514)
T ss_pred HHheeeecCCCCCcccCCCccccCcccccCCCeEEEeecCCc
Confidence 999999987554333444445556777778899999999964
No 19
>PLN02655 ent-kaurene oxidase
Probab=99.96 E-value=2.9e-29 Score=185.73 Aligned_cols=112 Identities=23% Similarity=0.439 Sum_probs=95.8
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhHhc
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLYHF 80 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~~f 80 (122)
||.|||||.|+++.|++|||+++|+||++|+||||+++... ......++|||.|+|.|+|+++|..+++++++.|+++|
T Consensus 353 g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~-~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f 431 (466)
T PLN02655 353 GYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYE-SADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEF 431 (466)
T ss_pred CEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCCcc-cCCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHe
Confidence 78999999999999999999999999999999999975422 22346899999999999999999999999999999999
Q ss_pred eeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCC
Q 042795 81 DWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYH 117 (122)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 117 (122)
++++.++.. . .....++++.+++++.+.+.+|.
T Consensus 432 ~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~r~ 464 (466)
T PLN02655 432 EWRLREGDE-E---KEDTVQLTTQKLHPLHAHLKPRG 464 (466)
T ss_pred EEEeCCCCc-c---ccchhheeEeecCCcEEEEeecC
Confidence 999876542 1 12345677788899999998885
No 20
>PLN02500 cytochrome P450 90B1
Probab=99.96 E-value=2.1e-29 Score=187.46 Aligned_cols=108 Identities=22% Similarity=0.357 Sum_probs=88.3
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCCCC------CCCceeeeecCcCCCCcCHHHHHHHHHHHHH
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSIDYK------GNNFEYIPFGAGRRICPGISFADAIMKLSLV 74 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~------~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a 74 (122)
||.|||||.|+++.|++||||++|+||++|+||||++++.... ..+..++|||+|+|.|+|+++|++|++++++
T Consensus 375 G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~la 454 (490)
T PLN02500 375 GYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIH 454 (490)
T ss_pred CEEECCCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999996532111 1356799999999999999999999999999
Q ss_pred HHhHhceeecCCCCCCCCcccccceeeEEecCCCeEEEEEe
Q 042795 75 VLLYHFDWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTL 115 (122)
Q Consensus 75 ~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (122)
.|+++|+|++.++.. .. . .. ...+.+++.|++.+
T Consensus 455 ~ll~~f~~~~~~~~~--~~--~--~~-~~~~~~~l~~~~~~ 488 (490)
T PLN02500 455 HLVLNFNWELAEADQ--AF--A--FP-FVDFPKGLPIRVRR 488 (490)
T ss_pred HHHhccEEEEcCCCc--ce--e--cc-cccCCCCceEEEEe
Confidence 999999999876532 11 1 11 22445688888765
No 21
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.96 E-value=1.2e-29 Score=184.08 Aligned_cols=88 Identities=39% Similarity=0.639 Sum_probs=77.6
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhHhc
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLYHF 80 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~~f 80 (122)
||.|||||.|+++.+++|+||++|+||++|+||||++.+.........++|||.|+|.|+|+++|++|++++++.|+++|
T Consensus 354 g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f 433 (463)
T PF00067_consen 354 GYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERGISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRF 433 (463)
T ss_dssp TEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHHE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999987652234677899999999999999999999999999999999
Q ss_pred eeecCCCC
Q 042795 81 DWTLPNEM 88 (122)
Q Consensus 81 ~~~~~~~~ 88 (122)
++++.++.
T Consensus 434 ~~~~~~~~ 441 (463)
T PF00067_consen 434 DFELVPGS 441 (463)
T ss_dssp EEEESTTS
T ss_pred EEEECCCC
Confidence 99997654
No 22
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.96 E-value=2.7e-29 Score=185.29 Aligned_cols=107 Identities=26% Similarity=0.394 Sum_probs=93.2
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhHhc
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLYHF 80 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~~f 80 (122)
||.||||+.|+++.+++|+|+++|+||++|+||||+++.. .+..++|||+|+|.|+|+++|++|+++++|.|+++|
T Consensus 346 g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~----~~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~f 421 (452)
T PLN03141 346 GYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDM----NNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRF 421 (452)
T ss_pred CEEECCCCEEEEehHhccCCchhcCCccccCcccccCCCC----CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999996532 356799999999999999999999999999999999
Q ss_pred eeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCCCC
Q 042795 81 DWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYHPS 119 (122)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~~ 119 (122)
++++.++.. . ...++.|.+++.|.+++|+.|
T Consensus 422 ~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~ 452 (452)
T PLN03141 422 RWVAEEDTI---V-----NFPTVRMKRKLPIWVTRIDDS 452 (452)
T ss_pred eeecCCCCe---e-----ecccccCCCCceEEEEeCCCC
Confidence 998765421 1 124678889999999999643
No 23
>PLN02774 brassinosteroid-6-oxidase
Probab=99.96 E-value=5.7e-29 Score=184.07 Aligned_cols=105 Identities=19% Similarity=0.325 Sum_probs=88.0
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhHhc
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLYHF 80 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~~f 80 (122)
||.||||+.|+++.|++||||++|+||++|+||||++++.. ....++|||+|+|.|+|+++|.+|++++++.|+++|
T Consensus 358 g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~---~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~f 434 (463)
T PLN02774 358 GYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLE---SHNYFFLFGGGTRLCPGKELGIVEISTFLHYFVTRY 434 (463)
T ss_pred CEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcC---CCccccCcCCCCCcCCcHHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999999999999999965421 123699999999999999999999999999999999
Q ss_pred eeecCCCCCCCCcccccceeeEEecCCCeEEEEEe
Q 042795 81 DWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTL 115 (122)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (122)
++++.++... . . ..++.|++++++++++
T Consensus 435 ~~~~~~~~~~--~---~--~~~~~p~~g~~~~~~~ 462 (463)
T PLN02774 435 RWEEVGGDKL--M---K--FPRVEAPNGLHIRVSP 462 (463)
T ss_pred eEEECCCCcc--c---c--CCCCCCCCCceEEeee
Confidence 9998765321 1 1 1234477899998874
No 24
>PLN02936 epsilon-ring hydroxylase
Probab=99.96 E-value=1.7e-28 Score=182.63 Aligned_cols=113 Identities=26% Similarity=0.450 Sum_probs=94.3
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCC--CCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhH
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSID--YKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLY 78 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~--~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~ 78 (122)
||.||+||.|+++.+++||||++|+||++|+||||+..+.. ....+..++|||.|+|.|+|+++|++|++++++.|++
T Consensus 369 g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ll~ 448 (489)
T PLN02936 369 GYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQ 448 (489)
T ss_pred CeEECCCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999964321 1122458999999999999999999999999999999
Q ss_pred hceeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCCC
Q 042795 79 HFDWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYHP 118 (122)
Q Consensus 79 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~ 118 (122)
+|+++++++.. +. ...+.++.+++++.|++++|.-
T Consensus 449 ~f~~~~~~~~~---~~--~~~~~~~~~~~~~~v~~~~R~~ 483 (489)
T PLN02936 449 RLDLELVPDQD---IV--MTTGATIHTTNGLYMTVSRRRV 483 (489)
T ss_pred hCeEEecCCCc---cc--eecceEEeeCCCeEEEEEeeeC
Confidence 99999876532 11 1224566788899999999863
No 25
>PLN03018 homomethionine N-hydroxylase
Probab=99.96 E-value=1.5e-28 Score=184.72 Aligned_cols=114 Identities=22% Similarity=0.378 Sum_probs=92.8
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCCC-----CCCCceeeeecCcCCCCcCHHHHHHHHHHHHHH
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSIDY-----KGNNFEYIPFGAGRRICPGISFADAIMKLSLVV 75 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~-----~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ 75 (122)
||.|||||.|.++.|++|+||++|+||++|+||||++++... ...+..++|||.|+|.|+|+++|++|++++++.
T Consensus 406 G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ 485 (534)
T PLN03018 406 GYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLAR 485 (534)
T ss_pred CEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999643211 124567999999999999999999999999999
Q ss_pred HhHhceeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCC
Q 042795 76 LLYHFDWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYH 117 (122)
Q Consensus 76 ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 117 (122)
|+++|++++.++.. .++.....+.+.. +.++.+++++|.
T Consensus 486 ll~~f~~~~~~~~~--~~~~~~~~~~~~~-p~~~~v~~~~R~ 524 (534)
T PLN03018 486 FLQGFNWKLHQDFG--PLSLEEDDASLLM-AKPLLLSVEPRL 524 (534)
T ss_pred HHHhceEEeCCCCC--CCCccccccceec-CCCeEEEEEecc
Confidence 99999999865431 2222222344444 569999999995
No 26
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=1.4e-28 Score=180.17 Aligned_cols=111 Identities=25% Similarity=0.427 Sum_probs=100.0
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhHhc
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLYHF 80 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~~f 80 (122)
||.|||||.|.++.|.+.+||.+|++|++|+|||||+++. .+.++..++|||.|+|+|+|+++|.+|+.+.+++++++|
T Consensus 408 gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~-~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~f 486 (519)
T KOG0159|consen 408 GYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPST-KTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRNF 486 (519)
T ss_pred cceecCCCeEEEeehhhccChhhCCCccccChhhhccccc-CCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999998763 266789999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCC
Q 042795 81 DWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYH 117 (122)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 117 (122)
+++....+ +....+.+++.|..++.+++++|.
T Consensus 487 ~V~~~~~~-----pv~~~~~~il~P~~~l~f~f~~r~ 518 (519)
T KOG0159|consen 487 KVEFLHEE-----PVEYVYRFILVPNRPLRFKFRPRN 518 (519)
T ss_pred ceeecCCC-----CccceeEEEEcCCCCcceeeeeCC
Confidence 99987643 344556788889999999999885
No 27
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.96 E-value=2.1e-28 Score=181.64 Aligned_cols=110 Identities=25% Similarity=0.352 Sum_probs=94.3
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhHhc
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLYHF 80 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~~f 80 (122)
||.|||||.|+++.+++|+||++|+||++|+||||+++... ......++|||+|+|.|+|+++|..|++++++.|+++|
T Consensus 361 G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~-~~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f 439 (472)
T PLN02987 361 GYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGT-TVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRF 439 (472)
T ss_pred CEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCC-CCCCcceECCCCCCcCCCcHHHHHHHHHHHHHHHHhce
Confidence 79999999999999999999999999999999999975322 22346799999999999999999999999999999999
Q ss_pred eeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCCC
Q 042795 81 DWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYHP 118 (122)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~ 118 (122)
++++.++. +. ....++.|.+++.+++++|+-
T Consensus 440 ~~~~~~~~---~~----~~~~~~~p~~~~~~~~~~r~~ 470 (472)
T PLN02987 440 SWVPAEQD---KL----VFFPTTRTQKRYPINVKRRDV 470 (472)
T ss_pred EEEECCCC---ce----eecccccCCCCceEEEEeccc
Confidence 99986543 11 123477898999999999964
No 28
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.95 E-value=1.8e-28 Score=182.02 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=92.0
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhHhc
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLYHF 80 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~~f 80 (122)
||.||||+.|.++.+++|||+++|+||++|+||||++.. ..+..++|||+|+|.|+|+++|.+|++++++.|+++|
T Consensus 382 g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~----~~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f 457 (490)
T PLN02302 382 GYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYT----PKAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGY 457 (490)
T ss_pred CEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCC----CCCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhcC
Confidence 799999999999999999999999999999999999643 2456899999999999999999999999999999999
Q ss_pred eeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCC
Q 042795 81 DWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYH 117 (122)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 117 (122)
++++.++.. ... ......|.+++.+++++|.
T Consensus 458 ~~~~~~~~~----~~~--~~~~~~p~~~~~~~~~~~~ 488 (490)
T PLN02302 458 RLERLNPGC----KVM--YLPHPRPKDNCLARITKVA 488 (490)
T ss_pred eeEEcCCCC----cce--eCCCCCCCCCceEEEEecc
Confidence 999875421 111 2233678899999999885
No 29
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.95 E-value=2.7e-28 Score=180.53 Aligned_cols=105 Identities=17% Similarity=0.334 Sum_probs=89.8
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhHhc
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLYHF 80 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~~f 80 (122)
||.|||||.|+++.+++|||+++|+||++|+||||+... .+..++|||.|+|.|+|+++|++|++++++.|+++|
T Consensus 358 g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~-----~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~ll~~f 432 (463)
T PLN02196 358 GYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP-----KPNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTKY 432 (463)
T ss_pred CEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC-----CCCcccCcCCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999999999532 346899999999999999999999999999999999
Q ss_pred eeecCCCCCCCCcccccceeeEEecCCCeEEEEEeC
Q 042795 81 DWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLY 116 (122)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R 116 (122)
++++.++.. .. ....+..|++++.|++...
T Consensus 433 ~~~~~~~~~----~~--~~~~~~~p~~~~~~~~~~~ 462 (463)
T PLN02196 433 RWSIVGTSN----GI--QYGPFALPQNGLPIALSRK 462 (463)
T ss_pred EEEEcCCCC----ce--EEcccccCCCCceEEEecC
Confidence 999876431 11 2334456888999988743
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=1.1e-26 Score=167.73 Aligned_cols=112 Identities=34% Similarity=0.546 Sum_probs=96.2
Q ss_pred CccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCCC-C-CC--CceeeeecCcCCCCcCHHHHHHHHHHHHHHHh
Q 042795 2 DSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSIDY-K-GN--NFEYIPFGAGRRICPGISFADAIMKLSLVVLL 77 (122)
Q Consensus 2 ~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~-~-~~--~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll 77 (122)
|.||+|..|.++++.+|+||++|+||+.|+|+||++++.+. + +. ++.++|||+|.+.|+|+.||++|++.++..+|
T Consensus 370 Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L 449 (486)
T KOG0684|consen 370 YVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLLL 449 (486)
T ss_pred eecCCCCEEEeccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCcCCCCchHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999876543 1 22 44579999999999999999999999999999
Q ss_pred HhceeecCCCCCCCCcccccceeeEEecCCCeEEEEEeCC
Q 042795 78 YHFDWTLPNEMKHEDLDMTETFSVGIRTKDDMYIIPTLYH 117 (122)
Q Consensus 78 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 117 (122)
+.||+++.++. .+.++ ...+++.|.+++.++.+.|.
T Consensus 450 ~~fdleLid~~-~P~~d---~s~~v~~P~g~v~irYK~R~ 485 (486)
T KOG0684|consen 450 RHFDLELIDGP-FPEVD---YSRMVMQPEGDVRIRYKRRP 485 (486)
T ss_pred HHcceeecCCC-CCCCC---HHHhhcCCCCCceEEEeecC
Confidence 99999999862 22333 23558889999999999885
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=8e-24 Score=154.89 Aligned_cols=77 Identities=31% Similarity=0.505 Sum_probs=72.9
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCHHHHHHHHHHHHHHHhHhc
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGISFADAIMKLSLVVLLYHF 80 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~a~ll~~f 80 (122)
|+.||||+.|++++++.||||++|++|++|+|+||. ..++|||+|.|.|+|..||++|++++++.|+++|
T Consensus 311 g~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~----------~~~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r~ 380 (411)
T COG2124 311 GYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN----------NAHLPFGGGPHRCLGAALARLELKVALAELLRRF 380 (411)
T ss_pred CEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC----------CCCcCCCCCCccccCHHHHHHHHHHHHHHHHHhC
Confidence 689999999999999999999999999999999996 5699999999999999999999999999999999
Q ss_pred eeecCCC
Q 042795 81 DWTLPNE 87 (122)
Q Consensus 81 ~~~~~~~ 87 (122)
++....+
T Consensus 381 ~~~~~~~ 387 (411)
T COG2124 381 PLLLLAE 387 (411)
T ss_pred chhhcCC
Confidence 9877654
No 32
>PLN02648 allene oxide synthase
Probab=99.89 E-value=2.2e-23 Score=155.10 Aligned_cols=85 Identities=22% Similarity=0.452 Sum_probs=72.6
Q ss_pred CCccCCCCEEEecchhhcCCCCCCCCCCCcCCCCcCCCCCCCCCCCceeeee---------cCcCCCCcCHHHHHHHHHH
Q 042795 1 MDSTYPGKPVIVNAWALGRDSKYWTEPERFIPDRFLECSIDYKGNNFEYIPF---------GAGRRICPGISFADAIMKL 71 (122)
Q Consensus 1 G~~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~F---------g~G~~~C~G~~~a~~~~~~ 71 (122)
||.||||+.|+++.+.+||||++|+||++|+|+||+++... ....+++| |+|+|.|+|++||++|+++
T Consensus 369 g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~---~~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~ 445 (480)
T PLN02648 369 AFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGE---KLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARL 445 (480)
T ss_pred eEEECCCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCcc---ccccccccCCCcccCCCCCCCccCccHHHHHHHHHH
Confidence 58999999999999999999999999999999999864321 11233343 6778999999999999999
Q ss_pred HHHHHhHhce-eecCCCC
Q 042795 72 SLVVLLYHFD-WTLPNEM 88 (122)
Q Consensus 72 ~~a~ll~~f~-~~~~~~~ 88 (122)
+++.|+++|+ |++.++.
T Consensus 446 ~la~Ll~~f~~~~l~~~~ 463 (480)
T PLN02648 446 FVAELFLRYDSFEIEVDT 463 (480)
T ss_pred HHHHHHHHhCEEeecCCc
Confidence 9999999998 9987765
No 33
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=74.44 E-value=2.5 Score=22.79 Aligned_cols=8 Identities=38% Similarity=0.646 Sum_probs=6.2
Q ss_pred CCCCcCCC
Q 042795 31 IPDRFLEC 38 (122)
Q Consensus 31 ~P~R~l~~ 38 (122)
||||||.-
T Consensus 44 DPERWLP~ 51 (59)
T PF08492_consen 44 DPERWLPK 51 (59)
T ss_pred CccccCch
Confidence 68999853
No 34
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=66.10 E-value=6.6 Score=25.00 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=16.2
Q ss_pred CCcCHHHHHHHHHHHHHHHhHh
Q 042795 58 ICPGISFADAIMKLSLVVLLYH 79 (122)
Q Consensus 58 ~C~G~~~a~~~~~~~~a~ll~~ 79 (122)
.|.|++||..++..++..|+..
T Consensus 19 N~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 19 NCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp ETTS----HHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999864
No 35
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=53.62 E-value=7.7 Score=25.62 Aligned_cols=35 Identities=20% Similarity=0.499 Sum_probs=24.9
Q ss_pred CCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCH
Q 042795 28 ERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGI 62 (122)
Q Consensus 28 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~ 62 (122)
-+|+|+||-.---....+.-+.+-|+.|+=.|.|-
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEcc
Confidence 58899988532222233556789999999999975
No 36
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=53.50 E-value=10 Score=21.95 Aligned_cols=20 Identities=25% Similarity=0.512 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhHhceeecCC
Q 042795 67 AIMKLSLVVLLYHFDWTLPN 86 (122)
Q Consensus 67 ~~~~~~~a~ll~~f~~~~~~ 86 (122)
..|+-++.++|+-|||.|+.
T Consensus 60 ~~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred HHHHHHHHHHhccCCceeee
Confidence 46888999999999999864
No 37
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=52.29 E-value=6 Score=26.21 Aligned_cols=36 Identities=17% Similarity=0.427 Sum_probs=25.1
Q ss_pred CCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCHH
Q 042795 28 ERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGIS 63 (122)
Q Consensus 28 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~ 63 (122)
.+|+|++|-.---....+....+-|..|+-.|.|.+
T Consensus 35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 378888884321122345678999999999999853
No 38
>PRK00394 transcription factor; Reviewed
Probab=50.22 E-value=9.4 Score=25.32 Aligned_cols=34 Identities=18% Similarity=0.499 Sum_probs=24.4
Q ss_pred CCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcC
Q 042795 28 ERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPG 61 (122)
Q Consensus 28 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G 61 (122)
-+|+|+||-.---....+.-+.+-|..|+=.|.|
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEc
Confidence 5889998853222223456678999999999988
No 39
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=49.44 E-value=7.2 Score=17.83 Aligned_cols=6 Identities=50% Similarity=1.198 Sum_probs=3.8
Q ss_pred cCCCCc
Q 042795 30 FIPDRF 35 (122)
Q Consensus 30 F~P~R~ 35 (122)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 457775
No 40
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=48.42 E-value=23 Score=23.33 Aligned_cols=34 Identities=18% Similarity=0.414 Sum_probs=24.2
Q ss_pred CCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcC
Q 042795 28 ERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPG 61 (122)
Q Consensus 28 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G 61 (122)
-+|+||||-.---....+.-+.+-|+.|+=.|.|
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitG 62 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITG 62 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEe
Confidence 5788888853222223356678899999999998
No 41
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=48.39 E-value=8.2 Score=25.99 Aligned_cols=34 Identities=21% Similarity=0.549 Sum_probs=22.3
Q ss_pred CCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcC
Q 042795 28 ERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPG 61 (122)
Q Consensus 28 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G 61 (122)
.+|+|.||-.--.....+.....-|+.|.=.|.|
T Consensus 50 ~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctg 83 (200)
T KOG3302|consen 50 AEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTG 83 (200)
T ss_pred cccCcccccEEEEEEcCCceEEEEecCCcEEEec
Confidence 5788988853211112244566789999999986
No 42
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=48.17 E-value=15 Score=24.28 Aligned_cols=56 Identities=16% Similarity=0.383 Sum_probs=31.9
Q ss_pred CCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcC-HHHHH-HHHHHHHHHHhHhceee
Q 042795 28 ERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPG-ISFAD-AIMKLSLVVLLYHFDWT 83 (122)
Q Consensus 28 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G-~~~a~-~~~~~~~a~ll~~f~~~ 83 (122)
-+|+||+|-.---....+.-..+-|+.|+=.|.| +.... ....--++.+|++..+.
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~i~~~L~~~g~~ 86 (174)
T cd04516 29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGAKSEDDSKLAARKYARIIQKLGFP 86 (174)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCC
Confidence 5888988743221223345678899999999987 32221 11222334556655543
No 43
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=45.18 E-value=9.2 Score=16.84 Aligned_cols=6 Identities=50% Similarity=1.198 Sum_probs=3.4
Q ss_pred cCCCCc
Q 042795 30 FIPDRF 35 (122)
Q Consensus 30 F~P~R~ 35 (122)
++||||
T Consensus 20 l~PErF 25 (25)
T PF09604_consen 20 LRPERF 25 (25)
T ss_pred hCcccC
Confidence 356665
No 44
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=44.76 E-value=18 Score=20.70 Aligned_cols=35 Identities=17% Similarity=0.368 Sum_probs=23.0
Q ss_pred CCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCH
Q 042795 28 ERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGI 62 (122)
Q Consensus 28 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~ 62 (122)
-+|+||+|-.---....+.-..+-|..|.=.|.|.
T Consensus 31 ~~YePe~fpgl~~r~~~p~~t~~IF~sGki~itGa 65 (86)
T PF00352_consen 31 VEYEPERFPGLIYRLRNPKATVLIFSSGKIVITGA 65 (86)
T ss_dssp EEEETTTESSEEEEETTTTEEEEEETTSEEEEEEE
T ss_pred cEEeeccCCeEEEeecCCcEEEEEEcCCEEEEEec
Confidence 36888877321111233456788999999999884
No 45
>PLN00062 TATA-box-binding protein; Provisional
Probab=42.46 E-value=13 Score=24.69 Aligned_cols=55 Identities=16% Similarity=0.404 Sum_probs=32.1
Q ss_pred CCcCCCCcCCCCCCCCCCCceeeeecCcCCCCcCH-HHHHH-HHHHHHHHHhHhcee
Q 042795 28 ERFIPDRFLECSIDYKGNNFEYIPFGAGRRICPGI-SFADA-IMKLSLVVLLYHFDW 82 (122)
Q Consensus 28 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~-~~a~~-~~~~~~a~ll~~f~~ 82 (122)
-+|+||+|-.---....+.-..+-|+.|+=.|.|- ..... ....-++.+|++..+
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~~~~~L~~lg~ 85 (179)
T PLN00062 29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHDSKLAARKYARIIQKLGF 85 (179)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCC
Confidence 58899988432222233456789999999999984 22221 122333455555544
No 46
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=40.51 E-value=12 Score=19.81 Aligned_cols=10 Identities=50% Similarity=1.089 Sum_probs=8.7
Q ss_pred eecCcCCCCc
Q 042795 51 PFGAGRRICP 60 (122)
Q Consensus 51 ~Fg~G~~~C~ 60 (122)
+||-|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6999999985
No 47
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=31.54 E-value=45 Score=20.61 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=16.7
Q ss_pred CCCCcCHHHHHHHHHHHHHHHh
Q 042795 56 RRICPGISFADAIMKLSLVVLL 77 (122)
Q Consensus 56 ~~~C~G~~~a~~~~~~~~a~ll 77 (122)
.|.|+|.-++......++..|-
T Consensus 4 GH~Cpgl~~G~r~~~~a~~~l~ 25 (131)
T PF02663_consen 4 GHLCPGLALGYRMAKYALEELG 25 (131)
T ss_dssp SS--HHHHHHHHHHHHHHHHHT
T ss_pred CCcCccHHHHHHHHHHHHHHcC
Confidence 4789999999999988887763
No 48
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=31.36 E-value=11 Score=16.73 Aligned_cols=7 Identities=43% Similarity=1.008 Sum_probs=4.3
Q ss_pred cCCCCcC
Q 042795 30 FIPDRFL 36 (122)
Q Consensus 30 F~P~R~l 36 (122)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 4577764
No 49
>PHA03162 hypothetical protein; Provisional
Probab=30.43 E-value=35 Score=21.54 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=18.5
Q ss_pred cCcCCCCcCHHHHHHHHHHHHHHH
Q 042795 53 GAGRRICPGISFADAIMKLSLVVL 76 (122)
Q Consensus 53 g~G~~~C~G~~~a~~~~~~~~a~l 76 (122)
++|.+.||++...+-++..=|++|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 468899999888877777666665
No 50
>PF01629 DUF22: Domain of unknown function DUF22; InterPro: IPR002572 This region is found in 1 to 3 copies in archaeal proteins whose function is unknown. It only appears in multiple copies in proteins from Archaeoglobus fulgidus.
Probab=28.78 E-value=45 Score=20.44 Aligned_cols=33 Identities=15% Similarity=-0.011 Sum_probs=22.0
Q ss_pred ccCCCCEEEecchhhcCCCCCCCCCCCcCCCCc
Q 042795 3 STYPGKPVIVNAWALGRDSKYWTEPERFIPDRF 35 (122)
Q Consensus 3 ~ip~Gt~v~~~~~~~~~~~~~~~~p~~F~P~R~ 35 (122)
.||++|.++...|..|.--.+-.=-++..|-+.
T Consensus 63 ~iP~~tIv~p~~~~rha~G~vi~v~e~~~p~~v 95 (112)
T PF01629_consen 63 EIPPNTIVMPCAYMRHALGSVIDVGEEGPPRPV 95 (112)
T ss_pred ecCCCCEEEEchHhhccCccEEEEEeccCceee
Confidence 589999999999988876555432333334444
No 51
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=23.22 E-value=82 Score=14.55 Aligned_cols=16 Identities=31% Similarity=0.789 Sum_probs=12.6
Q ss_pred CCceeeeecCcCCCCc
Q 042795 45 NNFEYIPFGAGRRICP 60 (122)
Q Consensus 45 ~~~~~~~Fg~G~~~C~ 60 (122)
...+|+++.+-.|.|.
T Consensus 16 ~~~Ty~~~~G~r~~C~ 31 (31)
T PF07886_consen 16 RDNTYQPYDGPRRFCR 31 (31)
T ss_pred CCCcEeCCCCccccCc
Confidence 4568999998888884
No 52
>PF14510 ABC_trans_N: ABC-transporter extracellular N-terminal
Probab=22.71 E-value=24 Score=20.08 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=15.1
Q ss_pred CCCCCCCCCCCcCCCCcCC
Q 042795 19 RDSKYWTEPERFIPDRFLE 37 (122)
Q Consensus 19 ~~~~~~~~p~~F~P~R~l~ 37 (122)
.|+.+-|+.++|+.++|+.
T Consensus 23 ~d~~ldp~s~~Fdl~~~lr 41 (85)
T PF14510_consen 23 SDSSLDPDSDDFDLRRWLR 41 (85)
T ss_pred CCCCCCCCCccccHHHHHH
Confidence 4566667778899999995
No 53
>KOG1939 consensus Oxoprolinase [Amino acid transport and metabolism]
Probab=22.31 E-value=37 Score=28.30 Aligned_cols=56 Identities=21% Similarity=0.274 Sum_probs=34.6
Q ss_pred CCCCcCCCCCCCCCCCceeeeec--CcCCCCc-CHHHHHHHHHHHH-HHHhHhceeecCC
Q 042795 31 IPDRFLECSIDYKGNNFEYIPFG--AGRRICP-GISFADAIMKLSL-VVLLYHFDWTLPN 86 (122)
Q Consensus 31 ~P~R~l~~~~~~~~~~~~~~~Fg--~G~~~C~-G~~~a~~~~~~~~-a~ll~~f~~~~~~ 86 (122)
+|=|-|.+........+...-|| +|.|+|. .+.|...++.+-- +.+|..|-+.+++
T Consensus 458 RPIR~lTesrG~d~s~H~LacFGGAGgQHacaiA~~LGI~kVlIHkYssiLSAYGmaLAd 517 (1247)
T KOG1939|consen 458 RPIRALTESRGHDTSNHALACFGGAGGQHACAIAKSLGILKVLIHKYSSILSAYGMALAD 517 (1247)
T ss_pred chHHHHHhhcCCcccceeeEeecCCCcchhHHHHhhcchhhhhHHHHHHHHhhhhhhhhh
Confidence 44455544333344566778898 5888883 6666666655443 6677777666654
No 54
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=21.66 E-value=52 Score=22.40 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=21.9
Q ss_pred ceeeeecCcCCCCcCHHHHHHHHHHHH
Q 042795 47 FEYIPFGAGRRICPGISFADAIMKLSL 73 (122)
Q Consensus 47 ~~~~~Fg~G~~~C~G~~~a~~~~~~~~ 73 (122)
...+-.|.|+..|+|+.||...+.+-.
T Consensus 40 gkv~V~G~GkSG~Igkk~Aa~L~s~G~ 66 (202)
T COG0794 40 GKVFVTGVGKSGLIGKKFAARLASTGT 66 (202)
T ss_pred CcEEEEcCChhHHHHHHHHHHHHccCC
Confidence 457889999999999999987666544
No 55
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=20.50 E-value=53 Score=22.30 Aligned_cols=12 Identities=8% Similarity=-0.338 Sum_probs=9.4
Q ss_pred CCccCCCCEEEe
Q 042795 1 MDSTYPGKPVIV 12 (122)
Q Consensus 1 G~~ip~Gt~v~~ 12 (122)
|..|||||.+.-
T Consensus 83 g~~IPkgt~l~G 94 (200)
T PF12508_consen 83 GILIPKGTYLYG 94 (200)
T ss_pred CEEeCCCCEEEE
Confidence 567899988765
Done!