BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>042797
MSWLIYEGLLLLGIIAVMLTIAGNAQYHIHKVAYEHLKHIGNNMWDLTMEKRDKKLIEQP
SSASSN

High Scoring Gene Products

Symbol, full name Information P value
AT3G08610 protein from Arabidopsis thaliana 6.6e-10

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042797
        (66 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2077813 - symbol:AT3G08610 "AT3G08610" species...   142  6.6e-10   1


>TAIR|locus:2077813 [details] [associations]
            symbol:AT3G08610 "AT3G08610" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005747 "mitochondrial respiratory chain complex
            I" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
            [GO:0051788 "response to misfolded protein" evidence=RCA]
            [GO:0080129 "proteasome core complex assembly" evidence=RCA]
            GO:GO:0016021 EMBL:CP002686 GO:GO:0022900 TCDB:3.D.1.6.3
            GO:GO:0005747 EMBL:AC012562 EMBL:BT006372 EMBL:AK220620
            EMBL:AK227324 EMBL:AY088759 IPI:IPI00533229 RefSeq:NP_566330.1
            UniGene:At.17613 IntAct:Q9C9Z5 STRING:Q9C9Z5 PRIDE:Q9C9Z5
            GeneID:820008 KEGG:ath:AT3G08610 GeneFarm:1878 TAIR:At3g08610
            eggNOG:NOG253590 HOGENOM:HOG000241498 InParanoid:Q9C9Z5 KO:K03945
            OMA:GGMLCIM PhylomeDB:Q9C9Z5 ProtClustDB:CLSN2688171
            BioCyc:ARA:AT3G08610-MONOMER BioCyc:MetaCyc:AT3G08610-MONOMER
            Genevestigator:Q9C9Z5 Uniprot:Q9C9Z5
        Length = 65

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 25/48 (52%), Positives = 37/48 (77%)

Query:    18 MLTIAGNAQYHIHKVAYEHLKHIGNNMWDLTMEKRDKKLIEQPSSASS 65
             ML I GN+QY+IHK  +   KHIG++ WD+ ME+RDKK++E+ ++ SS
Sbjct:    18 MLCIMGNSQYYIHKAYHGRPKHIGHDEWDVAMERRDKKVVEKAAAPSS 65


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.127   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       66        58   0.00091  102 3  11 22  0.49    27
                                                     29  0.47    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  543 (58 KB)
  Total size of DFA:  104 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.65u 0.11s 7.76t   Elapsed:  00:00:01
  Total cpu time:  7.65u 0.11s 7.76t   Elapsed:  00:00:01
  Start:  Sat May 11 01:41:51 2013   End:  Sat May 11 01:41:52 2013

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