Query 042797
Match_columns 66
No_of_seqs 105 out of 121
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 16:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_D Cytochrome C oxidase su 89.4 1.4 4.7E-05 29.0 6.3 47 9-55 79-125 (147)
2 2y69_D Cytochrome C oxidase su 88.0 1.8 6.3E-05 29.1 6.3 47 9-55 101-147 (169)
3 1v54_M VIIIB, IX, cytochrome C 86.4 1.1 3.8E-05 24.4 3.7 28 5-32 12-40 (46)
4 2y69_M Cytochrome C oxidase po 83.0 1.7 5.8E-05 25.6 3.7 28 5-32 36-64 (70)
5 2kvo_A Photosystem II reaction 46.3 2.8 9.7E-05 26.9 -0.8 22 31-52 69-99 (120)
6 1q90_G Cytochrome B6F complex 31.9 57 0.002 16.8 3.7 24 11-34 6-29 (37)
7 3arc_C Photosystem II core lig 30.2 1.5E+02 0.0051 22.7 6.2 55 7-63 251-313 (455)
8 3dww_A Prostaglandin E synthas 25.1 34 0.0012 21.9 1.7 19 6-24 82-100 (158)
9 2lez_A Secreted effector prote 23.8 61 0.0021 21.2 2.7 30 22-51 15-44 (145)
10 2o3a_A UPF0106 protein AF_0751 21.2 22 0.00074 24.2 0.1 9 51-59 15-23 (178)
No 1
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=89.37 E-value=1.4 Score=29.03 Aligned_cols=47 Identities=13% Similarity=0.149 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHhhhhh
Q 042797 9 LLLLGIIAVMLTIAGNAQYHIHKVAYEHLKHIGNNMWDLTMEKRDKK 55 (66)
Q Consensus 9 Lpp~gIi~~~~~v~G~~~~~i~~~~~Gk~kr~~~d~wd~~mm~RD~R 55 (66)
-+-+|.+..++++.+.....++.+.++.+++-..+.|+....+|=..
T Consensus 79 K~v~g~v~~~i~~s~~~f~~~r~~v~~p~P~T~~~Ewqeaq~erm~~ 125 (147)
T 1v54_D 79 KTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLD 125 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHH
Confidence 44577777778888888888888988888888889999888777443
No 2
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.01 E-value=1.8 Score=29.06 Aligned_cols=47 Identities=13% Similarity=0.149 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHhhhhh
Q 042797 9 LLLLGIIAVMLTIAGNAQYHIHKVAYEHLKHIGNNMWDLTMEKRDKK 55 (66)
Q Consensus 9 Lpp~gIi~~~~~v~G~~~~~i~~~~~Gk~kr~~~d~wd~~mm~RD~R 55 (66)
-+-+|.+..++++.+....+++.|.++.+++-..+.|+....||=..
T Consensus 101 K~V~ggv~~~i~~s~~~f~~~r~~v~~p~P~T~~~Ewqeaq~erml~ 147 (169)
T 2y69_D 101 KTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLD 147 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHH
Confidence 45577777778888888888888988888888889999888777443
No 3
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=86.44 E-value=1.1 Score=24.44 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 042797 5 IYEGLLLLGIIAVMLTIA-GNAQYHIHKV 32 (66)
Q Consensus 5 wfEaLpp~gIi~~~~~v~-G~~~~~i~~~ 32 (66)
+-|...++.++.++|.+| |+.+.++..|
T Consensus 12 ~~E~aigl~v~f~~~L~PagWVLshL~~Y 40 (46)
T 1v54_M 12 PKEQAIGLSVTFLSFLLPAGWVLYHLDNY 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 458888999999988888 9999988865
No 4
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.00 E-value=1.7 Score=25.58 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 042797 5 IYEGLLLLGIIAVMLTIA-GNAQYHIHKV 32 (66)
Q Consensus 5 wfEaLpp~gIi~~~~~v~-G~~~~~i~~~ 32 (66)
.-|..+++.++.++|.+| |+.++++..|
T Consensus 36 ~~E~aigltv~f~~~L~PagWVLshLe~Y 64 (70)
T 2y69_M 36 PKEQAIGLSVTFLSFLLPAGWVLYHLDNY 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 358889999999998888 9999988865
No 5
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=46.31 E-value=2.8 Score=26.90 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=16.3
Q ss_pred HHhcCCCccc-------cCcHHHHHH--Hhh
Q 042797 31 KVAYEHLKHI-------GNNMWDLTM--EKR 52 (66)
Q Consensus 31 ~~~~Gk~kr~-------~~d~wd~~m--m~R 52 (66)
||.||||+.+ +-+.|||-| |+|
T Consensus 69 KFvnGkp~~iEa~y~m~s~~~WdRFMRFMeR 99 (120)
T 2kvo_A 69 KFINGRPTAIEATVILNSQPEWDRFMRFMER 99 (120)
T ss_dssp EEETTEEEEEEEEEEECSSHHHHHHHHHHHH
T ss_pred EEECCceeEEEEEEEECCHHHHHHHHHHHHH
Confidence 3568998873 678999987 455
No 6
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=31.88 E-value=57 Score=16.84 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 042797 11 LLGIIAVMLTIAGNAQYHIHKVAY 34 (66)
Q Consensus 11 p~gIi~~~~~v~G~~~~~i~~~~~ 34 (66)
.+||+-+++.|+-.++...-..++
T Consensus 6 L~GIVlGlipvtlaGLfv~Ay~Qy 29 (37)
T 1q90_G 6 LCGIVLGLVPVTIAGLFVTAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHH
Confidence 368888888888777776666554
No 7
>3arc_C Photosystem II core light harvesting protein CP43; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_C* 1s5l_C* 1w5c_C* 2axt_C* 3bz2_C* 3prq_C* 3kzi_C* 3prr_C* 3a0b_C* 3a0h_C* 1izl_C*
Probab=30.23 E-value=1.5e+02 Score=22.71 Aligned_cols=55 Identities=22% Similarity=0.075 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcc-cc--CcHHHH----HHHhhhhhhhcccCCC
Q 042797 7 EGLLLLGIIAVMLTIAGNAQYHIHKVAY-EHLKH-IG--NNMWDL----TMEKRDKKLIEQPSSA 63 (66)
Q Consensus 7 EaLpp~gIi~~~~~v~G~~~~~i~~~~~-Gk~kr-~~--~d~wd~----~mm~RD~RLtg~~~~~ 63 (66)
|+.+++.|-+++ ++|....+.=.+++ =-|.- ++ ..+|++ .-..||+||-.+..+.
T Consensus 251 Ea~LSySLaava--~~gfiAA~~~wyNttayP~EfyGPt~~easQaq~ftflvrdqrlg~~~~s~ 313 (455)
T 3arc_C 251 EAYLSYSLGALS--MMGFIATCFVWFNNTVYPSEFYGPTGPEASQAQAMTFLIRDQKLGANVGSA 313 (455)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHCSTTTTHHHHCCCHHHHHHHHHHHHHHHHHHTTCCTTTC
T ss_pred hheeccchHHHH--HHHHHHhhhhccCcccchhhhcCCCccccccccchhhhhhhhhhccccccc
Confidence 889999886665 44666655555544 33333 23 344554 2468999998877654
No 8
>3dww_A Prostaglandin E synthase; membrane protein, four helix bundle, isomerase, membrane, transmembrane; HET: GSH; 3.50A {Homo sapiens}
Probab=25.11 E-value=34 Score=21.86 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 042797 6 YEGLLLLGIIAVMLTIAGN 24 (66)
Q Consensus 6 fEaLpp~gIi~~~~~v~G~ 24 (66)
+|.+|+|.+...+..+.|.
T Consensus 82 lE~~p~Fl~~~ll~~l~g~ 100 (158)
T 3dww_A 82 METIYPFLFLGFVYSFLGP 100 (158)
T ss_dssp HHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 6999999988877666543
No 9
>2lez_A Secreted effector protein PIPB2; structural genomics, northeast structural genomics consortiu bacterial effector, virulence factor; NMR {Salmonella enterica subsp}
Probab=23.75 E-value=61 Score=21.23 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCCccccCcHHHHHHHh
Q 042797 22 AGNAQYHIHKVAYEHLKHIGNNMWDLTMEK 51 (66)
Q Consensus 22 ~G~~~~~i~~~~~Gk~kr~~~d~wd~~mm~ 51 (66)
-|+..+.||-|+.|.-+|.+-.+|++.|..
T Consensus 15 qgi~E~IiNFFT~ggvrr~n~~~y~e~~e~ 44 (145)
T 2lez_A 15 KTILEYIINFFTCGGIRRRNETQYQELIET 44 (145)
T ss_dssp HHHHHHHHHHHHHCCCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhhhhHHHHHHHHHH
Confidence 366777888899999999888889888764
No 10
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=21.17 E-value=22 Score=24.16 Aligned_cols=9 Identities=33% Similarity=0.689 Sum_probs=5.6
Q ss_pred hhhhhhhcc
Q 042797 51 KRDKKLIEQ 59 (66)
Q Consensus 51 ~RD~RLtg~ 59 (66)
+||+|+|-.
T Consensus 15 ~RDkRiTTH 23 (178)
T 2o3a_A 15 ERDKRISTH 23 (178)
T ss_dssp --CHHHHHH
T ss_pred ccccchhhH
Confidence 699999853
Done!