BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042799
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQ 98
PLHVAS GH+ VK ++ R N +P+HMA+ GHTEV + LL+ ++
Sbjct: 17 PLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKVN 74
Query: 99 LQGPEAKTPLHCAAIKGRSHAVAEML--SACPECVEDVTIQHYTALHLAIKSSQYGVIAI 156
+ + +TPLHCAA G ++ V +L +A P T +T LH+A + +
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL---ATTAGHTPLHIAAREGHVETVLA 131
Query: 157 IVD 159
+++
Sbjct: 132 LLE 134
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 29/222 (13%)
Query: 32 ALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
A T+ PLH+A+ GH++ V ++ A + + GF+P+H+A+ G V LL+
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEKEASQAC-MTKKGFTPLHVAAKYGKVRVAELLLE 167
Query: 92 VDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQY 151
D G TPLH A+ + + ++L YT LH+A K +Q
Sbjct: 168 RDAH-PNAAGKNGLTPLHV-AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV 225
Query: 152 GVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQA 211
V ++ + E + QG T + L++ H +++ LLL QA
Sbjct: 226 EVARSLLQYGGSANAESV------QGVTPLH---LAAQEG-------HAEMVALLLSKQA 269
Query: 212 NASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAG 253
N + G N SGLT + L+ ++ G + ++L G
Sbjct: 270 NGNLG------NKSGLTPLHLV----AQEGHVPVADVLIKHG 301
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
PLHVAS YG+I VK ++ + D+ + + G+SP+H A+ GHT++V LLK
Sbjct: 314 PLHVASHYGNIKLVKFLLQHQADVNAKT-KLGYSPLHQAAQQGHTDIVTLLLK 365
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQ 98
PLH+A+ ++ + ++ E Q G +P+H+A+ GH E+V LL +
Sbjct: 215 PLHIAAKQNQVEVARSLLQYGGSANAESVQ-GVTPLHLAAQEGHAEMVALLLS-KQANGN 272
Query: 99 LQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAII 157
L TPLH A +G VA++L V+ T YT LH+A S YG I ++
Sbjct: 273 LGNKSGLTPLHLVAQEGHV-PVADVLIKHGVMVDATTRMGYTPLHVA---SHYGNIKLV 327
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 71 FSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPEC 130
+P+H+AS +GH +V+ LL+ + + +TPLH AA G + VA+ L
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHT-EVAKYLLQNKAK 72
Query: 131 VEDVTIQHYTALHLAIKSSQYGVIAIIVD 159
V T LH A + ++ ++++
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLE 101
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQ 98
PLH+A+ GH++ VK ++ D+ + +++G +P+H+A+ GH EVV+ LL+ +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-N 62
Query: 99 LQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIV 158
+ +TPLH AA G V +L A + V T LHLA ++ V+ +++
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 159 D 159
+
Sbjct: 122 E 122
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQ 98
PLH+A+ GH++ VK ++ D+ + +++G +P+H+A+ GH EVV+ LL+ +
Sbjct: 38 PLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-N 95
Query: 99 LQGPEAKTPLHCAAIKGRSHAVAEMLSA 126
+ +TPLH AA G V +L A
Sbjct: 96 AKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 69 DGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACP 128
+G +P+H+A+ GH EVV+ LL+ + + +TPLH AA G V +L A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 129 ECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQ 182
+ V T LHLA ++ V+ ++++ ++ N +D+ G T +
Sbjct: 60 D-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV------NAKDKNGRTPLH 106
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAG-NPLHVASAYGHIDFVKEIINLR 59
+ +KL EA +AG + L+ + +A+ + G PLH+A+ GH++ V+ ++
Sbjct: 14 LGKKLLEAARAGQDDEVRILIANGADV---NAVDNTGLTPLHLAAVSGHLEIVEVLLKHG 70
Query: 60 PDMAQEVNQDGFSPMHMASSIGHTEVVRELLK--VDRKLCQLQGPEAKTPLHCAAIKGRS 117
D+ + GF+P+H+A+ GH E+V LLK D + G TPLH AA +G
Sbjct: 71 ADV-DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS---TPLHLAADEGHL 126
Query: 118 HAVAEML 124
V +L
Sbjct: 127 EIVEVLL 133
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
PLH+A+ GH++ V+ ++ D+ + G +P+H+A+ GH E+V LLK
Sbjct: 83 PLHLAAMTGHLEIVEVLLKYGADV-NAFDMTGSTPLHLAADEGHLEIVEVLLK 134
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAG-NPLHVASAYGHIDFVKEIINLR 59
+ +KL EA +AG + L+ +A G PLH+A+A GH++ V+ ++
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGA---DANAYDHYGRTPLHMAAAVGHLEIVEVLLRNG 58
Query: 60 PDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHA 119
D+ V+ +G +P+H+A+S+GH E+V LLK + TPL+ AA G
Sbjct: 59 ADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD-VNAKDATGITPLYLAAYWGHLEI 116
Query: 120 VAEML 124
V +L
Sbjct: 117 VEVLL 121
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 34 TSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
T+ PLH+A++ GH++ V+ ++ D+ + + G +P+++A+ GH E+V LLK
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNAK-DATGITPLYLAAYWGHLEIVEVLLK 122
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 27/146 (18%)
Query: 105 KTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREM 164
+TPLH AA G V +L + V V T LHLA ++ +++ + ++
Sbjct: 36 RTPLHMAAAVGHLEIVEVLLRNGAD-VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV 94
Query: 165 KKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINH 224
N +D G T + L++ W H +++E+LL H G +VNA +
Sbjct: 95 ------NAKDATGITPLY---LAA-------YWGHLEIVEVLLKH------GADVNAQDK 132
Query: 225 SGLTAIDLLLIFPSEAGDREIEEILR 250
G TA D+ + + G+ ++ EIL+
Sbjct: 133 FGKTAFDISI----DIGNEDLAEILQ 154
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRP 60
+ RKL EA +AG + L+ + +A + PLH+A+ GH++ V+ ++
Sbjct: 14 LGRKLLEAARAGQDDEVRILMANGADV--NAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 61 DM-AQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAA 112
D+ A +V G++P+H+A+ GH E+V LLK + + + TPLH AA
Sbjct: 72 DVDASDVF--GYTPLHLAAYWGHLEIVEVLLKNGADVNAMD-SDGMTPLHLAA 121
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
PLH+A+ +GH++ V+ ++ D+ ++ DG +P+H+A+ G+ E+V LLK
Sbjct: 83 PLHLAAYWGHLEIVEVLLKNGADV-NAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRP 60
+ +KL EA +AG + L+ + T L PLH+A+ GH++ V+ ++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDWLGHT--PLHLAAKTGHLEIVEVLLKYGA 71
Query: 61 DMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAV 120
D+ N G +P+H+A+ GH E+V LLK + E TPLH AA G V
Sbjct: 72 DVNAWDNY-GATPLHLAADNGHLEIVEVLLKHGAD-VNAKDYEGFTPLHLAAYDGHLEIV 129
Query: 121 AEML 124
+L
Sbjct: 130 EVLL 133
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
PLH+A+ GH++ V+ ++ D+ + + +GF+P+H+A+ GH E+V LLK
Sbjct: 83 PLHLAADNGHLEIVEVLLKHGADVNAK-DYEGFTPLHLAAYDGHLEIVEVLLK 134
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 70 GFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPE 129
G +P+H+A+ GH E+V LLK + A TPLH AA G V +L +
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGA-TPLHLAADNGHLEIVEVLLKHGAD 105
Query: 130 CVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLS-S 188
V + +T LHLA ++ +++ + ++ N +D+ G T ++D+S
Sbjct: 106 -VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV------NAQDKFGKT---AFDISID 155
Query: 189 NYKEQL 194
N E L
Sbjct: 156 NGNEDL 161
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRP 60
+ +KL EA +AG + L+ + + PLH+A+ GH + V+ ++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV--NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA 71
Query: 61 DMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAV 120
D+ + DG++P+H+A+ GH E+V LLK Q TPLH AA +G V
Sbjct: 72 DVNAR-DTDGWTPLHLAADNGHLEIVEVLLKYGAD-VNAQDAYGLTPLHLAADRGHLEIV 129
Query: 121 AEML 124
+L
Sbjct: 130 EVLL 133
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 34 TSAGNPLHVASAYGHIDFVKEIINLRPDM-AQEVNQDGFSPMHMASSIGHTEVVRELLK 91
T PLH+A+ GH++ V+ ++ D+ AQ+ G +P+H+A+ GH E+V LLK
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAY--GLTPLHLAADRGHLEIVEVLLK 134
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRP 60
+ +KL EA +AG + L+ + +A PLH+A+ +GH++ V+ ++
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADV--NAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 61 DMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAV 120
D+ + G +P+H+A+ GH E+V LLK + + TPLH AA +G V
Sbjct: 72 DV-NAYDTLGSTPLHLAAHFGHLEIVEVLLK-NGADVNAKDDNGITPLHLAANRGHLEIV 129
Query: 121 AEML 124
+L
Sbjct: 130 EVLL 133
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 34 TSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
T PLH+A+ +GH++ V+ ++ D+ + + +G +P+H+A++ GH E+V LLK
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAK-DDNGITPLHLAANRGHLEIVEVLLK 134
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 70 GFSPMHMASSIGHTEVVRELLK--VDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEML--S 125
G++P+H+A+ GH E+V LLK D G TPLH AA G V +L
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGS---TPLHLAAHFGHLEIVEVLLKNG 103
Query: 126 ACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYD 185
A +D I T LHLA ++ +++ + ++ N +D+ G T ++D
Sbjct: 104 ADVNAKDDNGI---TPLHLAANRGHLEIVEVLLKYGADV------NAQDKFGKT---AFD 151
Query: 186 LSSN 189
+S N
Sbjct: 152 ISIN 155
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQ 98
PLH+A+ GH++ VK ++ D+ + +++G +P+H+A+ GH EVV+ LL+ +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-N 62
Query: 99 LQGPEAKTPLHCAAIKGRSHAVAEMLSA 126
+ +TPLH AA G V +L A
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 69 DGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACP 128
+G +P+H+A+ GH EVV+ LL+ + + +TPLH AA G V +L A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 129 ECVEDVTIQHYTALHLAIKSSQYGVIAIIVD 159
+ V T LHLA ++ V+ ++++
Sbjct: 60 D-VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRP 60
+ +KL EA +AG + L+ + A S PLH+A+ GH++ V+ ++
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDA--SGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 61 DMAQEVNQDGFSPMHMASSIGHTEVVRELLK--VDRKLCQLQGPEAKTPLHCAAIKGRSH 118
D+ V+ G +P+ +A+ GH E+V LLK D ++G TPLH AA+ G
Sbjct: 72 DV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG---HTPLHLAAMFGHLE 127
Query: 119 AVAEML 124
V +L
Sbjct: 128 IVEVLL 133
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 30 TSALTSAG-NPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRE 88
+A+ AG PL +A+ +GH++ V+ ++ D+ + +G +P+H+A+ GH E+V
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN-DMEGHTPLHLAAMFGHLEIVEV 131
Query: 89 LLK 91
LLK
Sbjct: 132 LLK 134
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 13/159 (8%)
Query: 37 GNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKL 96
G L A+ G D V+ ++ D+ E + G++P+H+A+ GH E+V LLK +
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 97 CQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAI 156
+ TPL AA+ G V E+L V ++ +T LHLA ++ +
Sbjct: 74 NAVD-HAGMTPLRLAALFGHLEIV-EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 157 IVDWIREMKKEHIFNMRDEQGNTKIQSYDLS-SNYKEQL 194
+ +K N +D+ G T ++D+S N E L
Sbjct: 132 L------LKNGADVNAQDKFGKT---AFDISIDNGNEDL 161
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 199 HWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGATGMG 258
H +++E+LL G +VNA++H+G+T + L +F G EI E+L GA
Sbjct: 59 HLEIVEVLL------KNGADVNAVDHAGMTPLRLAALF----GHLEIVEVLLKNGADVNA 108
Query: 259 DDNQTST 265
+D + T
Sbjct: 109 NDMEGHT 115
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 37 GNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKL 96
G L A+ G D V+ ++ D+ + ++DG++P+H+A+ GH E+V LLK +
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADV 73
Query: 97 CQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAI 156
+ + TPLH AA +G V +L A + V YT LHLA + ++ +
Sbjct: 74 -NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEV 131
Query: 157 IVDWIREMKKEHIFNMRDEQGNTKIQSYDLS-SNYKEQL 194
+ +K N +D+ G T ++D+S N E L
Sbjct: 132 L------LKAGADVNAQDKFGKT---AFDISIDNGNEDL 161
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 34/169 (20%)
Query: 33 LTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKV 92
++ G L A+ G+ D VK+++ D+ + DG +P+H+A+ GH EVV+ L
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLL--- 56
Query: 93 DRKLCQLQGPEA-----KTPLHCAAIKGRSHAVAEMLS--ACPECVEDVTIQHYTALHLA 145
L Q P A KTPLH AA G V +LS A P + T LHLA
Sbjct: 57 ---LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD---SDGKTPLHLA 110
Query: 146 IKSSQYGVIAII-----------------VDWIREMKKEHIFNMRDEQG 177
++ V+ ++ +D RE E + + ++QG
Sbjct: 111 AENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 67 NQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSA 126
++DG++P+H+A+ GH E+V LLK + + + TPLH AA +G V +L A
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 127 CPECVEDVTIQHYTALHLAIKSSQYGVIAIIV 158
+ V YT LHLA + ++ +++
Sbjct: 91 GAD-VNAKDKDGYTPLHLAAREGHLEIVEVLL 121
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRP 60
+ +KL EA +AG + L+ + + T PLH+A+ GH++ V+ ++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV--NAEDTYGDTPLHLAARVGHLEIVEVLLKNGA 71
Query: 61 DMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAV 120
D+ ++ G +P+H+A+ GH E+V LLK TPLH AA G V
Sbjct: 72 DV-NALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD-VNADDTIGSTPLHLAADTGHLEIV 129
Query: 121 AEML 124
+L
Sbjct: 130 EVLL 133
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 17/161 (10%)
Query: 37 GNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLK--VDR 94
G L A+ G D V+ ++ D+ E + G +P+H+A+ +GH E+V LLK D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAE-DTYGDTPLHLAARVGHLEIVEVLLKNGADV 73
Query: 95 KLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVI 154
G TPLH AA +G V +L + D TI T LHLA + ++
Sbjct: 74 NALDFSGS---TPLHLAAKRGHLEIVEVLLKYGADVNADDTIG-STPLHLAADTGHLEIV 129
Query: 155 AIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLS-SNYKEQL 194
+++ + ++ N +D+ G T ++D+S N E L
Sbjct: 130 EVLLKYGADV------NAQDKFGKT---AFDISIDNGNEDL 161
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 35 SAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQD---GFSPMHMASSIGHTEVVRELLK 91
S PLH+A+ GH++ V+ ++ D VN D G +P+H+A+ GH E+V LLK
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKYGAD----VNADDTIGSTPLHLAADTGHLEIVEVLLK 134
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAG-NPLHVASAYGHIDFVKEIINLR 59
+ +KL EAT+AG + L+ + +A+ AG PLH+A+ GH++ V+ ++
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADV---NAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 60 PDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
D+ + G +P+H+A+++GH E+V LL+
Sbjct: 71 ADVNAS-DSWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 7/93 (7%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAG-NPLHVASAYGHIDFVKEIINLR 59
+ +KL EAT+AG + L+ + +A+ AG PLH+A+ GH++ V+ ++
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADV---NAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 60 PDM-AQEVNQDGFSPMHMASSIGHTEVVRELLK 91
D+ A+++ G +P+H+A+++GH E+V LL+
Sbjct: 71 ADVNARDIW--GRTPLHLAATVGHLEIVEVLLE 101
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 5/92 (5%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAG-NPLHVASAYGHIDFVKEIINLR 59
+ +KL EA +AG + L+ + +A G PL++A+A+GH++ V+ ++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV---NAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70
Query: 60 PDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
D+ V+ GF+P+H+A+ IGH E+ LLK
Sbjct: 71 ADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGN-PLHVASAYGHIDFVKEIINLR 59
+ +KL EA +AG + L+ + +A GN PLH+A+ Y H++ V+ ++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV---NANDRKGNTPLHLAADYDHLEIVEVLLKHG 70
Query: 60 PDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
D+ N DG +P+H+A+ GH E+V LLK
Sbjct: 71 ADVNAHDN-DGSTPLHLAALFGHLEIVEVLLK 101
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 37 GNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKL 96
G L A+ G D V+ ++ D+ ++ G +P+H+A+ H E+V LLK +
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAN-DRKGNTPLHLAADYDHLEIVEVLLKHGADV 73
Query: 97 CQLQGPEAKTPLHCAAIKGRSHAVAEML 124
+ TPLH AA+ G V +L
Sbjct: 74 -NAHDNDGSTPLHLAALFGHLEIVEVLL 100
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 67 NQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSA 126
++DG++P+H+A+ GH E+V LLK + + TPLH AA +G V +L A
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 127 CPECVEDVTIQHYTALHLAIKSSQYGVIAIIV 158
+ V YT LHLA + ++ +++
Sbjct: 91 GAD-VNAKDKDGYTPLHLAAREGHLEIVEVLL 121
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAG-NPLHVASAYGHIDFVKEIINLR 59
+ +KL EA +AG + L+ + +A G PLH+A+ +GH++ V+ ++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV---NARDFTGWTPLHLAAHFGHLEIVEVLLKNG 70
Query: 60 PDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHA 119
D+ + + G +P+H+A+ GH E+V LLK + TPLH AA +G
Sbjct: 71 ADVNAK-DSLGVTPLHLAARRGHLEIVEVLLK-NGADVNASDSHGFTPLHLAAKRGHLEI 128
Query: 120 VAEML 124
V +L
Sbjct: 129 VEVLL 133
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
Query: 70 GFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPE 129
G++P+H+A+ GH E+V LLK + + TPLH AA +G V +L +
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLK-NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105
Query: 130 CVEDVTIQH-YTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLS- 187
+ + H +T LHLA K ++ ++ +K N +D+ G T ++D+S
Sbjct: 106 V--NASDSHGFTPLHLAAKRGHLEIVEVL------LKNGADVNAQDKFGKT---AFDISI 154
Query: 188 SNYKEQL 194
N E L
Sbjct: 155 DNGNEDL 161
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
PLH+A+ GH++ V+ ++ D+ + GF+P+H+A+ GH E+V LLK
Sbjct: 83 PLHLAARRGHLEIVEVLLKNGADV-NASDSHGFTPLHLAAKRGHLEIVEVLLK 134
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAG-NPLHVASAYGHIDFVKEIINLR 59
+ +KL EA +AG + L+ + +AL G PLH+A+ GH++ V+ ++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV---NALDEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 60 PDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
D+ E N G +P+H+A+ GH E+V LLK
Sbjct: 71 ADVNAEDNF-GITPLHLAAIRGHLEIVEVLLK 101
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 37 GNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKL 96
G L A+ G D V+ ++ D+ +++DG +P+H+A+ +GH E+V LLK +
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADV-NALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV 73
Query: 97 CQLQGPEAKTPLHCAAIKGRSHAVAEML 124
+ TPLH AAI+G V +L
Sbjct: 74 -NAEDNFGITPLHLAAIRGHLEIVEVLL 100
Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 214 SQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGATGMGDDN 261
+ G +VNA++ GLT + L ++ G EI E+L GA +DN
Sbjct: 35 ANGADVNALDEDGLTPLHL----AAQLGHLEIVEVLLKYGADVNAEDN 78
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAG-NPLHVASAYGHIDFVKEIINLR 59
+ +KL EA +AG + L+ + +A G PLH+A+ +GH++ V+ ++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV---NASDHVGWTPLHLAAYFGHLEIVEVLLKNG 70
Query: 60 PDMAQEVNQD---GFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGR 116
D VN D G +P+H+A+ GH EVV LLK + TPLH AA G
Sbjct: 71 AD----VNADDSLGVTPLHLAADRGHLEVVEVLLK-NGADVNANDHNGFTPLHLAANIGH 125
Query: 117 SHAVAEML 124
V +L
Sbjct: 126 LEIVEVLL 133
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
PLH+A+ GH++ V+ ++ D+ + +GF+P+H+A++IGH E+V LLK
Sbjct: 83 PLHLAADRGHLEVVEVLLKNGADVNAN-DHNGFTPLHLAANIGHLEIVEVLLK 134
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 12/126 (9%)
Query: 70 GFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPE 129
G++P+H+A+ GH E+V LLK + TPLH AA +G V E+L
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLK-NGADVNADDSLGVTPLHLAADRGHLE-VVEVLLKNGA 104
Query: 130 CVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLS-S 188
V +T LHLA ++ ++ +K N +D+ G T ++D+S
Sbjct: 105 DVNANDHNGFTPLHLAANIGHLEIVEVL------LKHGADVNAQDKFGKT---AFDISID 155
Query: 189 NYKEQL 194
N E L
Sbjct: 156 NGNEDL 161
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 199 HWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGA 254
H +V+E+LL G +VNA +H+G T + L + G EI E+L GA
Sbjct: 92 HLEVVEVLL------KNGADVNANDHNGFTPLHL----AANIGHLEIVEVLLKHGA 137
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 56/93 (60%), Gaps = 7/93 (7%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAG-NPLHVASAYGHIDFVKEIINLR 59
+ +KL EAT+AG + L+ + +A+ AG PLH+A+ GH++ V+ ++
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADV---NAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 60 PDM-AQEVNQDGFSPMHMASSIGHTEVVRELLK 91
D+ A ++ G +P+H+A+++GH E+V LL+
Sbjct: 71 ADVNASDIW--GRTPLHLAATVGHLEIVEVLLE 101
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRP 60
+ +KL EA +AG + L+ + PLH+ GH++ ++ ++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDWFGIT--PLHLVVNNGHLEIIEVLLKYAA 71
Query: 61 DMAQEVNQDGFSPMHMASSIGHTEVVRELLK--VDRKLCQLQGPEAKTPLHCAAIKGRSH 118
D+ ++ G++P+H+A+ GH E+V LLK D QG TPLH AA G
Sbjct: 72 DV-NASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQG---YTPLHLAAEDGHLE 127
Query: 119 AVAEML 124
V +L
Sbjct: 128 IVEVLL 133
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 70 GFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPE 129
G +P+H+ + GH E++ LLK TPLH AA +G V E+L
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIV-EVLLKYGA 104
Query: 130 CVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLS-S 188
V + Q YT LHLA + ++ +++ + ++ N +D+ G T ++D+S
Sbjct: 105 DVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADV------NAQDKFGKT---AFDISID 155
Query: 189 NYKEQL 194
N E L
Sbjct: 156 NGNEDL 161
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 35 SAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
S PLH+A+ GH++ V+ ++ D+ ++ G++P+H+A+ GH E+V LLK
Sbjct: 79 SGWTPLHLAAYRGHLEIVEVLLKYGADV-NAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 3 RKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDM 62
+KL EA +AG + L+ + + S PLH+A+ GH++ V+ ++ D+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADV--NAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV 73
Query: 63 AQEVNQDGFSPMHMASSIGHTEVVRELLK--VDRKLCQLQGPEAKTPLHCAAIKGRSHAV 120
++ G +P+H+A+ GH E+V LLK D G TPLH AA G V
Sbjct: 74 -NAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGF---TPLHLAADAGHLEIV 129
Query: 121 AEML 124
+L
Sbjct: 130 EVLL 133
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
PLH+A+ YGH++ V+ ++ D+ + GF+P+H+A+ GH E+V LLK
Sbjct: 83 PLHLAALYGHLEIVEVLLKNGADV-NATDTYGFTPLHLAADAGHLEIVEVLLK 134
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 17/161 (10%)
Query: 37 GNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLK--VDR 94
G L A+ G D V+ ++ D+ + DG++P+H+A+S GH E+V LLK D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLLKNGADV 73
Query: 95 KLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVI 154
L G TPLH AA G V +L + V +T LHLA K ++
Sbjct: 74 NASDLTGI---TPLHLAAATGHLEIVEVLLKHGAD-VNAYDNDGHTPLHLAAKYGHLEIV 129
Query: 155 AIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLS-SNYKEQL 194
++ +K N +D+ G T ++D+S N E L
Sbjct: 130 EVL------LKHGADVNAQDKFGKT---AFDISIDNGNEDL 161
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPD 61
DR+L EA +AG+V+++ +L + + PLH A+ Y + V+ ++ D
Sbjct: 11 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYLLQHGAD 69
Query: 62 MAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGR 116
+ + ++ G P+H A S GH EV ELL + + TPLH AA KG+
Sbjct: 70 VHAK-DKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGK 122
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPD 61
DR+L EA +AG+V+++ +L + + PLH A+ Y + V+ ++ D
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYLLQHGAD 67
Query: 62 MAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGR 116
+ + ++ G P+H A S GH EV ELL + + TPLH AA KG+
Sbjct: 68 VHAK-DKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGK 120
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPD 61
DR+L EA +AG+V+++ +L + + PLH A+ Y + V+ ++ D
Sbjct: 13 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYLLQHGAD 71
Query: 62 MAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGR 116
+ + ++ G P+H A S GH EV ELL + + TPLH AA KG+
Sbjct: 72 VHAK-DKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGK 124
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRP 60
+ +KL EA AG + L+ + T + PLH+A+A G ++ V+ ++
Sbjct: 6 LGKKLLEAAAAGQDDEVRILMANGADVNATD--DNGLTPLHLAAANGQLEIVEVLLKNGA 63
Query: 61 DMAQEVNQDGFSPMHMASSIGHTEVVRELLK--VDRKLCQLQGPEAKTPLHCAAIKGRSH 118
D+ + G +P+H+A+ GH E+V LLK D G TPLH AA+ G+
Sbjct: 64 DV-NASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAG---WTPLHLAALSGQLE 119
Query: 119 AVAEML 124
V +L
Sbjct: 120 IVEVLL 125
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 30 TSALTSAG-NPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRE 88
+A SAG PLH+A+ GH++ V+ ++ D+ ++ G++P+H+A+ G E+V
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEV 123
Query: 89 LLK 91
LLK
Sbjct: 124 LLK 126
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 62/214 (28%)
Query: 37 GNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKL 96
G L A+A G D V+ ++ D+ + +G +P+H+A++ G E+V LLK +
Sbjct: 7 GKKLLEAAAAGQDDEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLLK-NGAD 64
Query: 97 CQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAI 156
TPLH AA G V +L + V +T LHLA S Q
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD-VNAYDRAGWTPLHLAALSGQL----- 118
Query: 157 IVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQG 216
+++E+LL H G
Sbjct: 119 --------------------------------------------EIVEVLLKH------G 128
Query: 217 LEVNAINHSGLTAIDLLLIFPSEAGDREIEEILR 250
+VNA + GLTA D+ + G ++ EIL+
Sbjct: 129 ADVNAQDALGLTAFDISI----NQGQEDLAEILQ 158
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query: 33 LTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKV 92
++ G L A+ G+ D VK++I D+ + DG +P+H A+ GH E+V+ LL
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVK-LLIS 58
Query: 93 DRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYG 152
+ + +TPLH AA +G V ++S + V T LH A K
Sbjct: 59 KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKE 117
Query: 153 VIAIIV-----------------DWIREMKKEHIFNMRDEQG 177
++ +++ D RE E I + ++QG
Sbjct: 118 IVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 29 HTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRE 88
H PLH A+ GH + VK++++ D+ ++DG +P+H+A+ GH E+V+
Sbjct: 2 HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHAEIVKL 60
Query: 89 LLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSA 126
LL + + + TP H A G H + ++L A
Sbjct: 61 LLAKGADV-NARSKDGNTPEHLAKKNGH-HEIVKLLDA 96
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 4 KLFEATQAGNVQSLHQLLGENPLILHTSALTS-AGNPLHVASAYGHIDFVKEIINLRPDM 62
+L EA ++GN + L LL PL ++ A PLH+A+ Y + V+ ++ D+
Sbjct: 27 ELLEAARSGNEEKLMALL--TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84
Query: 63 AQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAE 122
+ ++ G P+H A S GH EV LLK + + + TPLH AA K R +
Sbjct: 85 HAK-DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF-TPLHEAASKNRVEVCSL 142
Query: 123 MLS 125
+LS
Sbjct: 143 LLS 145
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 29 HTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRE 88
H +AL A VAS + V E++ + E N+D +P+H+A+ H +V+
Sbjct: 211 HETALHCA-----VASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEV 265
Query: 89 LLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLS 125
L K K+ L +T LH AA+ G +LS
Sbjct: 266 LHKHGAKMNALDSL-GQTALHRAALAGHLQTCRLLLS 301
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query: 33 LTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKV 92
++ G L A+ G+ D VK++I D+ + DG +P+H A+ GH EVV+ LL
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVK-LLIS 58
Query: 93 DRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYG 152
+ + +TPLH AA G V ++S + V T LH A ++
Sbjct: 59 KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKE 117
Query: 153 VIAIIV-----------------DWIREMKKEHIFNMRDEQG 177
V+ +++ D RE E + + ++QG
Sbjct: 118 VVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 91/185 (49%), Gaps = 12/185 (6%)
Query: 5 LFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEII-NLRPDMA 63
L EA + +++++ L+ L+ A S LH+A+ GH + V+ ++ N + D+
Sbjct: 48 LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC--LHLAAKKGHYEVVQYLLSNGQMDVN 105
Query: 64 QEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEM 123
+ + G++PM A+ H ++V+ LL + ++ E LH AA G +AE+
Sbjct: 106 CQ-DDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVD-IAEI 162
Query: 124 LSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQS 183
L A + V I + LH+A + ++Y + + + ++ +++++G T +Q
Sbjct: 163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF------LSRDSDVTLKNKEGETPLQC 216
Query: 184 YDLSS 188
L+S
Sbjct: 217 ASLNS 221
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 38 NPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLC 97
+PLH A+ GH+D ++ ++ ++D +P+ A+ H E V+ L+K L
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAG-ALV 70
Query: 98 QLQGPEAKTPLHCAAIKGRSHAVAEMLS 125
+ E T LH AA KG V +LS
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLS 98
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 40 LHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQL 99
LH A+ G +D + ++ + D+ VN G SP+H+A+ + V L D + L
Sbjct: 148 LHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV-TL 205
Query: 100 QGPEAKTPLHCAAIKGRSHAVAEMLSA 126
+ E +TPL CA++ + + +M A
Sbjct: 206 KNKEGETPLQCASLNSQVWSALQMSKA 232
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 27/186 (14%)
Query: 67 NQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSA 126
+Q+ SP+H A+ GH ++ L++ + + +TPL AA AV ++ A
Sbjct: 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKA 66
Query: 127 CPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDL 186
V+ + T LHLA K Y V+ ++ + N +D+ G T +
Sbjct: 67 -GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS-----NGQMDVNCQDDGGWTPMI---W 117
Query: 187 SSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIE 246
++ YK H +++LLL S+G ++N ++ ++ L + + +G +I
Sbjct: 118 ATEYK-------HVDLVKLLL------SKGSDINIRDNEE----NICLHWAAFSGCVDIA 160
Query: 247 EILRSA 252
EIL +A
Sbjct: 161 EILLAA 166
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 24/164 (14%)
Query: 33 LTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKV 92
++ G L A+ G+ D VK+++ D + DG +P+H A+ GH E+V+ LL
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSK 59
Query: 93 DRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLS--ACPECVEDVTIQHYTALHLAIKSSQ 150
+ + +TPLH AA G V +LS A P + T LH A ++
Sbjct: 60 GAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD---SDGRTPLHYAAENGH 115
Query: 151 YGVIAII-----------------VDWIREMKKEHIFNMRDEQG 177
++ ++ +D RE E I + ++QG
Sbjct: 116 KEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 47 GHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKT 106
G +D +KE I +A +QD + +H A S GHTE+V LL++ + + +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWS 75
Query: 107 PLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVD 159
PLH AA GR V +L V V T LH A +++ + ++++
Sbjct: 76 PLHIAASAGRDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 38 NPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLC 97
+PLH+A++ G + VK ++ ++ VNQ+G +P+H A+S E+ LL+
Sbjct: 75 SPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG---- 129
Query: 98 QLQGPEAK-----TPLHCAAIKG 115
P+AK T +H AA KG
Sbjct: 130 --ANPDAKDHYDATAMHRAAAKG 150
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 47 GHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKT 106
G ++ +KE I +A +QD + +H A S GHTE+V LL++ + + +
Sbjct: 18 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWS 76
Query: 107 PLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVD 159
PLH AA GR V +L + V V T LH A +++ + ++++
Sbjct: 77 PLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLE 128
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 38 NPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLC 97
+PLH+A++ G + VK ++ + VNQ+G +P+H A+S E+ LL+
Sbjct: 76 SPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-- 132
Query: 98 QLQGPEAK-----TPLHCAAIKG 115
P+AK T +H AA KG
Sbjct: 133 ----PDAKDHYEATAMHRAAAKG 151
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 47 GHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKT 106
G ++ +KE I +A +QD + +H A S GHTE+V LL++ + + +
Sbjct: 17 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWS 75
Query: 107 PLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVD 159
PLH AA GR V +L + V V T LH A +++ + ++++
Sbjct: 76 PLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 38 NPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLC 97
+PLH+A++ G + VK ++ + VNQ+G +P+H A+S E+ LL+
Sbjct: 75 SPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-- 131
Query: 98 QLQGPEAK-----TPLHCAAIKG 115
P+AK T +H AA KG
Sbjct: 132 ----PDAKDHYEATAMHRAAAKG 150
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 70 GFSPMHMASSIGHTEVVRELLK--VDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSAC 127
G +P+H+A++ GH E+V LLK D + G TPLH AA+ G V +L
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS---TPLHLAALIGHLEIVEVLLKHG 103
Query: 128 PECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLS 187
+ V V T LHLA ++ ++ +K N +D+ G T ++D+S
Sbjct: 104 AD-VNAVDTWGDTPLHLAAIMGHLEIVEVL------LKHGADVNAQDKFGKT---AFDIS 153
Query: 188 -SNYKEQL 194
N E L
Sbjct: 154 IDNGNEDL 161
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 70 GFSPMHMASSIGHTEVVRELLK--VDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSAC 127
G +P+H+A++ GH E+V LLK D + G TPLH AA+ G V +L
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS---TPLHLAALIGHLEIVEVLLKHG 103
Query: 128 PECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLS 187
+ V V T LHLA ++ ++ +K N +D+ G T ++D+S
Sbjct: 104 AD-VNAVDTWGDTPLHLAAIMGHLEIVEVL------LKHGADVNAQDKFGKT---AFDIS 153
Query: 188 -SNYKEQL 194
N E L
Sbjct: 154 IDNGNEDL 161
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRP 60
+ +KL EA +AG + ++L N T L ++ PLH+A+ YGH F + LR
Sbjct: 2 LGKKLLEAARAGQDDEV-RILMANGAPFTTDWLGTS--PLHLAAQYGH--FSTTEVLLRA 56
Query: 61 DMAQEVNQD-GFSPMHMASSIGHTEVVRELLK 91
++++ +P+HMA+S GH +V LLK
Sbjct: 57 GVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 70 GFSPMHMASSIGHTEVVRELLK--VDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSAC 127
G SP+H+A+ GH LL+ V R + +TPLH AA +G ++ V +L
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSR---DARTKVDRTPLHMAASEGHANIVEVLLKHG 90
Query: 128 PECVEDVTIQHYTALHLAIKSSQYGVIAIIVDW 160
+ V + TALH A + + V+ +++ +
Sbjct: 91 AD-VNAKDMLKMTALHWATEHNHQEVVELLIKY 122
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 35 SAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDR 94
S G LHVA+A G+ + +K +I R D+ + + DG++P+H A+ G E R L++
Sbjct: 198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIK-DYDGWTPLHAAAHWGKEEACRILVE--- 253
Query: 95 KLCQLQ 100
LC ++
Sbjct: 254 NLCDME 259
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 70 GFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAV 120
G + +H+A++ G+TEV++ L++ R ++ + TPLH AA G+ A
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEAC 248
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQ 98
PLH A+ GH+ V +++ D ++ +G S +H+A+ GHT +V L+ + +
Sbjct: 79 PLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-D 136
Query: 99 LQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHY-TALHLAIKSSQYGVIAII 157
+ TPL AA + S +L V H TALH A+ + VI+++
Sbjct: 137 MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL 196
Query: 158 VD 159
++
Sbjct: 197 LE 198
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 92/217 (42%), Gaps = 43/217 (19%)
Query: 43 ASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGP 102
A+ YG + +E++ D+ Q +++ + +H A+ ++V+ + + QL G
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQP-DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD 74
Query: 103 EAKTPLHCAAIKGRSHAVAEML--SACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDW 160
TPLH A +G V +++ A P ++ + + +HLA + ++A ++
Sbjct: 75 LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG---EGCSCIHLAAQFGHTSIVAYLI-- 129
Query: 161 IREMKKEHIFNMRDEQGNTKIQ----------------SYDLSSNYKEQL--KTWIHW-- 200
K +M D+ G T + ++++S N ++ T +HW
Sbjct: 130 ----AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAV 185
Query: 201 -----QVIELLLGHQANASQGLEVNAINHSGLTAIDL 232
VI LLL G V+A N G +A+DL
Sbjct: 186 LAGNTTVISLLL------EAGANVDAQNIKGESALDL 216
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 47 GHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKT 106
G +D +KE I +A +QD + +H A S GHTE+V LL++ + + +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWS 75
Query: 107 PLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVD 159
PLH AA G V +L V V T LH A +++ + ++++
Sbjct: 76 PLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 38 NPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLC 97
+PLH+A++ G + VK ++ ++ VNQ+G +P+H A+S E+ LL+
Sbjct: 75 SPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG---- 129
Query: 98 QLQGPEAK-----TPLHCAAIKG 115
P+AK T +H AA KG
Sbjct: 130 --ANPDAKDHYDATAMHRAAAKG 150
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 40 LHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQL 99
LH+AS G I V+ ++ D + + G++P+H A + GH +VV ELL + L
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVV-ELLLQHKALVNT 71
Query: 100 QGPEAKTPLHCAAIKGRSHAVAEMLS 125
G + +PLH AA G V +LS
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 67 NQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSA 126
N G + +H+AS G V LL+ + ++ TPLH A G V E+L
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHL-KVVELLLQ 64
Query: 127 CPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMR 173
V Q+ + LH A K+ ++ +++ + +IF +R
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLR 111
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAG-NPLHVASAYGHIDFVKEIINLR 59
+ +KL EA +AG + L+ + +A G PLH+A+ H++ V+ ++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV---NAEDKVGLTPLHLAAMNDHLEIVEVLLKNG 70
Query: 60 PDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
D+ ++ G +P+H+ + GH E+V LLK
Sbjct: 71 ADV-NAIDAIGETPLHLVAMYGHLEIVEVLLK 101
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 35 SAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDR 94
S NPLH A+ G++ +++E ++ R + +++ G + ++ A GH ++V L
Sbjct: 72 SIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEXLFTQPN 130
Query: 95 KLCQLQGPEAKTPLHCAAIKGRSHAVAEMLS 125
Q T LH AA KG + V +L+
Sbjct: 131 IELNQQNKLGDTALHAAAWKGYADIVQLLLA 161
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 3/124 (2%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQ 98
PLH A V+E+++ +P + + +QDG P+H + S E+ LL +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 99 LQGPEAK--TPLHCAAIKGRSHAVAEMLS-ACPECVEDVTIQHYTALHLAIKSSQYGVIA 155
P+ TP H A G V + + +T Q T LHLA+ + V
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 156 IIVD 159
+++
Sbjct: 125 FLIE 128
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQ 98
PLH A V+E+++ +P + + +QDG P+H + S E+ LL +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 99 LQGPEAK--TPLHCAAIKGRSHAVAEMLS--ACPECVEDVTIQHYTALHLAIKSSQYGVI 154
P+ TP H A G V + P+ + +T Q T LHLA+ + V
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVS 123
Query: 155 AIIVD 159
+++
Sbjct: 124 QFLIE 128
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 38 NPLHVA-----SAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKV 92
NPL +A S G D V+ II D N +G + +H A GHTE+V+ L++
Sbjct: 34 NPLPLALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92
Query: 93 DRKLCQLQGPEAKTPLHCAA 112
+ + TPLHCAA
Sbjct: 93 GVNV-NAADSDGWTPLHCAA 111
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 5 LFEATQAGNVQSLHQLLGE--NPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDM 62
L +++ G + +++ E +P + + +T+ LH A GH + VK ++ ++
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITA----LHNAVCAGHTEIVKFLVQFGVNV 96
Query: 63 AQEVNQDGFSPMHMASSIGHTEVVRELLK 91
+ DG++P+H A+S + +V + L++
Sbjct: 97 -NAADSDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQ 98
PLH A V+E+++ +P + + +QDG P+H + S E+ LL +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 99 LQGPEAK--TPLHCAAIKGRSHAVAEMLS--ACPECVEDVTIQHYTALHLAIKSSQYGVI 154
P+ TP H A G V + P+ + +T Q T LHLA+ + V
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVS 123
Query: 155 AIIVD 159
+++
Sbjct: 124 QFLIE 128
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 1 MDRKLFEATQAGNVQSLHQL------LGENPLILHTSALTSAGNPLHVASAYGHIDFVKE 54
+ +KL EA +AG + L + N HT PLH+A+ GH++ V+
Sbjct: 14 LGKKLLEAARAGQDDEVRILTANGADVNANDYWGHT--------PLHLAAMLGHLEIVEV 65
Query: 55 IINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
++ D+ N G +P+H+A+ H E+V LLK
Sbjct: 66 LLKNGADVNATGNT-GRTPLHLAAWADHLEIVEVLLK 101
Score = 37.0 bits (84), Expect = 0.024, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 70 GFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAA 112
G +P+H+A+ +GH E+V LLK + G +TPLH AA
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADV-NATGNTGRTPLHLAA 88
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 38 NPLHV---ASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDR 94
NPL + +S G D V+ II D N +G + +H A GHTE+V+ L++
Sbjct: 36 NPLALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 94
Query: 95 KLCQLQGPEAKTPLHCAA 112
+ + TPLHCAA
Sbjct: 95 NV-NAADSDGWTPLHCAA 111
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 5 LFEATQAGNVQSLHQLLGE--NPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDM 62
L +++ G + +++ E +P + + +T+ LH A GH + VK ++ ++
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITA----LHNAVCAGHTEIVKFLVQFGVNV 96
Query: 63 AQEVNQDGFSPMHMASSIGHTEVVRELLK 91
+ DG++P+H A+S + +V + L++
Sbjct: 97 -NAADSDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQ 98
PLH A G V+ +I +R +N+ +P+H+A+S GH ++V++LL+ +
Sbjct: 42 PLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 99 LQGPEAKTPLHCAAIKGRSHAVAEMLSA 126
+ PLH A G+ VAE L A
Sbjct: 101 VN-EHGNVPLHYACFWGQDQ-VAEDLVA 126
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 70 GFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEML 124
GFSP+H A G + VV E+L + + TPLH AA G V ++L
Sbjct: 39 GFSPLHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 92
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQ 98
PLH A G V+ +I +R +N+ +P+H+A+S GH ++V++LL+ +
Sbjct: 37 PLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 99 LQGPEAKTPLHCAAIKGRSHAVAEMLSA 126
+ PLH A G+ VAE L A
Sbjct: 96 VN-EHGNVPLHYACFWGQDQ-VAEDLVA 121
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 70 GFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEML 124
GFSP+H A G + VV E+L + + TPLH AA G V ++L
Sbjct: 34 GFSPLHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 87
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 3 RKLFEATQAGNVQSLHQLL--GENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRP 60
R + + GN + +LL G NP + + +H A+ G +D ++ ++ +
Sbjct: 39 RTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAV----IHDAARAGQLDTLQTLLEFQA 94
Query: 61 DMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAV 120
D+ E N+ G P+H+A+ GH VV L+K + + T A + GR+ V
Sbjct: 95 DVNIEDNE-GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Query: 121 AEM 123
+ M
Sbjct: 154 SLM 156
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 3 RKLFEATQAGNVQSLHQLL--GENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRP 60
R + + GN + +LL G NP + + +H A+ G +D ++ ++ +
Sbjct: 39 RTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAV----IHDAARAGFLDTLQTLLEFQA 94
Query: 61 DMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAV 120
D+ E N+ G P+H+A+ GH VV L+K + + T A + GR+ V
Sbjct: 95 DVNIEDNE-GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Query: 121 AEM 123
+ M
Sbjct: 154 SLM 156
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 3 RKLFEATQAGNVQSLHQLL--GENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRP 60
R + + GN + +LL G NP + + +H A+ G +D ++ ++ +
Sbjct: 39 RTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAV----IHDAARAGFLDTLQTLLEFQA 94
Query: 61 DMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAV 120
D+ E N+ G P+H+A+ GH VV L+K + + T A + GR+ V
Sbjct: 95 DVNIEDNE-GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Query: 121 AEM 123
+ M
Sbjct: 154 SLM 156
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 3 RKLFEATQAGNVQSLHQLL--GENPLILHTSALTSAGNP-LHVASAYGHIDFVKEIINLR 59
R + + GN + +LL G NP + + GN +H A+ G +D ++ ++ +
Sbjct: 39 RTALQVMKLGNPEIARRLLLRGANPDLKDRT-----GNAVIHDAARAGFLDTLQTLLEFQ 93
Query: 60 PDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHA 119
D+ E N+ G P+H+A+ GH VV L+K + + T A + GR+
Sbjct: 94 ADVNIEDNE-GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Query: 120 VAEM 123
V+ M
Sbjct: 153 VSLM 156
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 38 NPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRK 95
+PLHVA+ +G D + ++ + A N D P+H+A GH +VV+ LL + K
Sbjct: 88 SPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAK 144
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 34/182 (18%)
Query: 67 NQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSA 126
+QDG SP+H+A+ G +++ LLK +A PLH A +G V +L +
Sbjct: 83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQA-VPLHLACQQGHFQVVKCLLDS 141
Query: 127 CPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDL 186
+ + T L A + ++A++ ++ N + +GNT + +
Sbjct: 142 NAK-PNKKDLSGNTPLIYACSGGHHELVALL------LQHGASINASNNKGNTALHEAVI 194
Query: 187 SSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAID----------LLLIF 236
H V+ELLL H G V +N TA+D LL +
Sbjct: 195 EK----------HVFVVELLLLH------GASVQVLNKRQRTAVDCAEQNSKIMELLQVV 238
Query: 237 PS 238
PS
Sbjct: 239 PS 240
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 40 LHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQL 99
+H +A G +D +KE + ++ + ++ GF+P+ AS+ G E VR LL+ +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHI 64
Query: 100 QGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHY 139
E ++ L A+ G + V +L DV I Y
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLE------RDVDINIY 98
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 40 LHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQL 99
+H +A G +D +KE + ++ + ++ GF+P+ AS+ G E VR LL+ +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHI 64
Query: 100 QGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHY 139
E ++ L A+ G + V +L DV I Y
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLE------RDVDINIY 98
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 72 SPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECV 131
SP+ +A+ + + +LLK + +G +T LH AA+ A ++ A PE V
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 132 -EDVTIQHY---TALHLAI 146
E +T + Y TALH+A+
Sbjct: 65 FEPMTSELYEGQTALHIAV 83
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 37 GNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
G L A+ G D V+ ++ D+ + ++DG++P+H+A+ GH E+V LLK
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 3 RKLFEATQAGNVQSLHQLL--GENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRP 60
R + + GN + +LL G NP + + +H A+ G +D ++ ++ +
Sbjct: 39 RTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAV----IHDAARAGFLDTLQTLLENQA 94
Query: 61 DMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAV 120
D+ E N+ G P+H+A+ GH VV L+K + + T A + GR+ V
Sbjct: 95 DVNIEDNE-GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Query: 121 AEM 123
+ M
Sbjct: 154 SLM 156
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 40 LHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQL 99
L +A ++G +D VK ++ D+ + + DG + + A GH E+ LL V L
Sbjct: 187 LMLAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACEHGHKEIAGLLLAVPSCDISL 245
Query: 100 QGPEAKTPLHCAAIKGRSHAVAEML 124
+ T L A G+S +A ML
Sbjct: 246 TDRDGSTALMVALDAGQSE-IASML 269
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 33/53 (62%)
Query: 40 LHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKV 92
LH+AS +G++ V+ +++L D+ + +G + +H+A + + ++V LLK
Sbjct: 118 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 170
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 70 GFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPE 129
G + +H A+ + + +V+ L+ Q + KTP+ AA +GR V ++
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA- 337
Query: 130 CVEDVTIQHYTALHLAIKSSQYGVIAI 156
VE V +TA LA ++ + ++ I
Sbjct: 338 SVEAVDATDHTARQLAQANNHHNIVDI 364
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 32.3 bits (72), Expect = 0.55, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 37 GNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
G L A+ G D V+ ++ D+A + +++G +P+H+A+ GH EVV+ LL+
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLE 78
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRP 60
+ +KL EA +AG + L+ + + + PLH+A+ GH++ VK ++
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGADV--AAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81
Query: 61 DMAQEVNQDGFSPMHMASSIGH-TEVVRELLK 91
D+ QD F SI + E + E+L+
Sbjct: 82 DVXA---QDKFGKTAFDISIDNGNEDLAEILQ 110
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 9 TQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQ 68
TQ+ LH +L HT LH+AS +G++ V+ +++L D+ +
Sbjct: 98 TQSCTTPHLHSILKATNYNGHTC--------LHLASIHGYLGIVELLVSLGADVNAQEPC 149
Query: 69 DGFSPMHMASSIGHTEVVRELLKV 92
+G + +H+A + + ++V LLK
Sbjct: 150 NGRTALHLAVDLQNPDLVSLLLKC 173
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
Query: 64 QEVNQDGFSPMHMASSIGH------TEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRS 117
Q++ +DG S +H+A I H EV+R++ K D Q +TPLH A I +
Sbjct: 2 QQLTEDGDSFLHLA--IIHEEKALTMEVIRQV-KGDLAFLNFQNNLQQTPLHLAVITNQP 58
Query: 118 HAVAEMLSA-CPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQ 176
+L A C + D + T LHLA + + ++ I +
Sbjct: 59 EIAEALLGAGCDPELRD--FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN 116
Query: 177 GNTKI 181
G+T +
Sbjct: 117 GHTCL 121
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 32.0 bits (71), Expect = 0.64, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 37 GNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLK 91
G L A+ G D V+ ++ D+A + +++G +P+H+A+ GH EVV+ LL+
Sbjct: 7 GKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLE 60
Score = 29.3 bits (64), Expect = 4.7, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRP 60
+ +KL EA +AG + L+ + + + PLH+A+ GH++ VK ++
Sbjct: 6 LGKKLLEAARAGQDDEVRILMANGADV--AAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
Query: 61 DMAQEVNQDGFSPMHMASSIGH-TEVVRELLK 91
D+ QD F SI + E + E+L+
Sbjct: 64 DVNA---QDKFGKTAFDISIDNGNEDLAEILQ 92
>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SNZ|B Chain B, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SO0|A Chain A, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|B Chain B, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|C Chain C, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|D Chain D, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
Length = 344
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 183 SYDLSSNYKEQLKTWIHWQVI--ELLLGHQANASQGLEVNAINHS 225
S D Y +LK W+ + + EL++ ++A ASQ VN NHS
Sbjct: 135 SPDGEEGYPGELKVWVTYTLDGGELIVNYRAQASQATPVNLTNHS 179
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDR 94
PL VAS YG + VK+++ L D++ + G + A G EV++ +V R
Sbjct: 137 PLIVASKYGRSEIVKKLLELGADISAR-DLTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 41/157 (26%)
Query: 105 KTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREM 164
+TPL A + G +A+ +++ + +ED I+ TAL A+K+++ G+ + +
Sbjct: 36 RTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKL------L 88
Query: 165 KKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVI-------ELLLGHQANASQGL 217
K N +D G KT + W +I LL H AN
Sbjct: 89 SKGSNVNTKDFSG-----------------KTPLMWSIIFGYSEMSYFLLEHGAN----- 126
Query: 218 EVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGA 254
VN N G T LI S+ G EI + L GA
Sbjct: 127 -VNDRNLEGETP----LIVASKYGRSEIVKKLLELGA 158
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 34 TSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVD 93
TS +P+H A+ G +D +K ++ D+ + G P+H+A GHT VV L +
Sbjct: 66 TSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVV-SFLAAE 123
Query: 94 RKLCQLQGPEAKTPLHCAAIKG 115
L + + TPL A +G
Sbjct: 124 SDLHR-RDARGLTPLELALQRG 144
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 34 TSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVD 93
TS +P+H A+ G +D +K ++ D+ + G P+H+A GHT VV L +
Sbjct: 72 TSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVV-SFLAAE 129
Query: 94 RKLCQLQGPEAKTPLHCAAIKG 115
L + + TPL A +G
Sbjct: 130 SDLHR-RDARGLTPLELALQRG 150
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 67 NQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEML 124
N DG +P+H+A E+VR L L + + +TPLH A++ ++ +V E+L
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL-AVEAQAASVLELL 211
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 15/191 (7%)
Query: 66 VNQDGFSPMHMASSIGHTEVVRELL--KVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEM 123
V +DG + +H+A H + LL + LQ +T LH AAI G + V E
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV-EK 63
Query: 124 LSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQS 183
L A V +TALHLA + + +++ + + H RD QS
Sbjct: 64 LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLL----QPRPSH---PRDASDTYLTQS 116
Query: 184 YDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDR 243
D + + + Q + L++ A N+ G T + + +I D
Sbjct: 117 QDCTPD-TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH----KDA 171
Query: 244 EIEEILRSAGA 254
E+ +LR AGA
Sbjct: 172 EMVRLLRDAGA 182
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 67 NQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEML 124
N DG +P+H+A E+VR L L + + +TPLH A++ ++ +V E+L
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL-AVEAQAASVLELL 211
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 15/191 (7%)
Query: 66 VNQDGFSPMHMASSIGHTEVVRELL--KVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEM 123
V +DG + +H+A H + LL + LQ +T LH AAI G + V E
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV-EK 63
Query: 124 LSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQS 183
L A V +TALHLA + + +++ + + H RD QS
Sbjct: 64 LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLL----QPRPSH---PRDASDTYLTQS 116
Query: 184 YDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDR 243
D + + + Q + L++ A N+ G T + + +I D
Sbjct: 117 QDCTPD-TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH----KDA 171
Query: 244 EIEEILRSAGA 254
E+ +LR AGA
Sbjct: 172 EMVRLLRDAGA 182
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 32/200 (16%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEV---NQDGFSPMHMASSIGHTEVVRELLKVDRK 95
PLH+A G++ V ++NL +E+ N +P+H+A VVR L+
Sbjct: 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 71
Query: 96 LCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHY---TALHLAIKSSQYG 152
L +T H A + +L + D+ ++Y TALH+A+ +
Sbjct: 72 PMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE 130
Query: 153 VIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIH--WQVIELLLGHQ 210
+ +++ E+G I + D+ S + + +++LLL H
Sbjct: 131 TVQLLL----------------ERG-ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG 173
Query: 211 ANASQGLEVNAINHSGLTAI 230
AN VNA +SG +A+
Sbjct: 174 AN------VNAQMYSGSSAL 187
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 28 LHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVR 87
LH + LH+A+AY D K ++ D + N G +P+H A S V +
Sbjct: 49 LHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNM-GRTPLHAAVSADAQGVFQ 107
Query: 88 ELLKVDRKLCQLQGPEAKTPLHCAA 112
L++ + + TPL AA
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAA 132
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 38 NPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLC 97
+P+H A+ +GH ++ +I+ + + D SP+H A GH V+ LLK
Sbjct: 5 SPMHEAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA--- 60
Query: 98 QLQGPEAK--TPLHCAAIKGRSHAVAEML 124
Q+ G A TPL A + G V +L
Sbjct: 61 QVNGVTADWHTPLFNACVSGSWDCVNLLL 89
>pdb|1UD2|A Chain A, Crystal Structure Of Calcium-Free Alpha-Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38)
pdb|1UD4|A Chain A, Crystal Structure Of Calcium Free Alpha Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38, In Calcium
Containing Solution)
pdb|1UD5|A Chain A, Crystal Structure Of Amyk38 With Rubidium Ion
pdb|1UD6|A Chain A, Crystal Structure Of Amyk38 With Potassium Ion
pdb|1UD8|A Chain A, Crystal Structure Of Amyk38 With Lithium Ion
Length = 480
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 26/109 (23%)
Query: 135 TIQHYTALHLAIKSSQYGVIAII------VDWIREMKKEHIFNMRDEQGNTKIQ----SY 184
TI +T + +++ Y VDW + ++ HIF + N ++ +Y
Sbjct: 134 TIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNY 193
Query: 185 D--LSSN-------YKEQLKTWIHWQVIELLLGHQANASQGLEVNAINH 224
D L SN +++LK W W EL L G ++AI H
Sbjct: 194 DYLLGSNIDFSHPEVQDELKDWGSWFTDELDL-------DGYRLDAIKH 235
>pdb|1UD3|A Chain A, Crystal Structure Of Amyk38 N289h Mutant
Length = 480
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 26/109 (23%)
Query: 135 TIQHYTALHLAIKSSQYGVIAII------VDWIREMKKEHIFNMRDEQGNTKIQ----SY 184
TI +T + +++ Y VDW + ++ HIF + N ++ +Y
Sbjct: 134 TIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNY 193
Query: 185 D--LSSN-------YKEQLKTWIHWQVIELLLGHQANASQGLEVNAINH 224
D L SN +++LK W W EL L G ++AI H
Sbjct: 194 DYLLGSNIDFSHPEVQDELKDWGSWFTDELDL-------DGYRLDAIKH 235
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 24 NPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHT 83
NPL+ S +P+H A+ +GH ++ +I+ + + D SP+H A GH
Sbjct: 50 NPLM---GDAVSDWSPMHEAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHL 105
Query: 84 EVVRELLKVDRKLCQLQGPEAK--TPLHCAAIKGRSHAVAEML 124
V+ LLK Q+ G A TPL A + G V +L
Sbjct: 106 SCVKILLK---HGAQVNGVTADWHTPLFNACVSGSWDCVNLLL 145
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 34 TSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVV 86
S +P+H A+ G +D +K ++ D+ ++ G P+H+A GH+ VV
Sbjct: 74 ASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGHSSVV 125
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 34 TSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVV 86
S +P+H A+ G +D +K ++ D+ ++ G P+H+A GH+ VV
Sbjct: 72 ASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGHSSVV 123
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 28 LHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVR 87
LH + LH+A+ Y D K ++ D + N G +P+H A S V +
Sbjct: 14 LHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNM-GRTPLHAAVSADAQGVFQ 72
Query: 88 ELLKVDRKLCQLQGPEAKTPLHCAA 112
LL+ + + TPL AA
Sbjct: 73 ILLRNRATDLDARMHDGTTPLILAA 97
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 6/123 (4%)
Query: 39 PLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQ 98
PLH A A + + ++ R DG +P+ +A+ + +V +L+ D +
Sbjct: 87 PLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA 146
Query: 99 LQGPEAKTPLHCAAIKGRSHAVAEML--SACPECVEDVTIQHYTALHLAIKSSQYGVIAI 156
KT LH AA + AV +L A + +D + T L LA + Y
Sbjct: 147 ADNS-GKTALHWAAAVNNTEAVNILLMHHANRDAQDD---KDETPLFLAAREGSYEASKA 202
Query: 157 IVD 159
++D
Sbjct: 203 LLD 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,750,974
Number of Sequences: 62578
Number of extensions: 497156
Number of successful extensions: 1376
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 200
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)