Query 042799
Match_columns 449
No_of_seqs 397 out of 3252
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 16:49:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aji_A 26S proteasome non-ATPa 100.0 2.1E-40 7.1E-45 302.1 21.1 224 2-255 7-230 (231)
2 1yyh_A HN1;, notch 1, ankyrin 100.0 6E-40 2.1E-44 303.7 18.2 223 2-253 11-246 (253)
3 3d9h_A CDNA FLJ77766, highly s 100.0 1.8E-39 6.3E-44 305.9 21.2 239 2-271 16-263 (285)
4 2xai_A ASB-9, ankyrin repeat a 100.0 2.9E-39 1E-43 300.6 22.0 235 2-271 4-246 (261)
5 1wdy_A 2-5A-dependent ribonucl 100.0 4.1E-39 1.4E-43 302.2 22.6 245 2-271 6-261 (285)
6 3utm_A Tankyrase-1; tankyrase, 100.0 2.9E-39 9.8E-44 312.7 21.3 240 2-271 25-321 (351)
7 1wdy_A 2-5A-dependent ribonucl 100.0 1.3E-38 4.4E-43 298.9 24.1 229 2-260 40-283 (285)
8 1k1a_A B-cell lymphoma 3-encod 100.0 5E-39 1.7E-43 294.7 19.6 222 2-254 10-240 (241)
9 2dzn_A Probable 26S proteasome 100.0 1.2E-38 4.1E-43 289.8 21.1 218 2-251 3-226 (228)
10 1n11_A Ankyrin; clathrin, BAND 100.0 1.1E-38 3.7E-43 318.9 22.2 238 3-271 148-385 (437)
11 4b93_B Ankyrin repeat domain-c 100.0 3.7E-39 1.3E-43 300.9 16.3 225 3-256 13-245 (269)
12 3d9h_A CDNA FLJ77766, highly s 100.0 2.7E-38 9.4E-43 297.9 22.4 222 2-258 60-282 (285)
13 1oy3_D Transcription factor in 100.0 1.8E-38 6E-43 298.0 20.3 247 2-275 10-270 (282)
14 1n11_A Ankyrin; clathrin, BAND 100.0 3.2E-38 1.1E-42 315.5 23.4 239 2-271 15-253 (437)
15 3b7b_A Euchromatic histone-lys 100.0 7.3E-38 2.5E-42 286.4 23.5 219 2-250 12-230 (237)
16 4g8k_A 2-5A-dependent ribonucl 100.0 4.8E-38 1.6E-42 303.4 23.2 231 2-259 26-302 (337)
17 3ljn_A Hypothetical protein; a 100.0 3.2E-38 1.1E-42 307.9 21.6 229 2-258 21-272 (364)
18 1oy3_D Transcription factor in 100.0 4.2E-38 1.4E-42 295.4 19.0 207 2-234 46-266 (282)
19 2f8y_A Notch homolog 1, transl 100.0 4.6E-38 1.6E-42 285.0 18.1 220 11-259 1-220 (223)
20 1yyh_A HN1;, notch 1, ankyrin 100.0 1E-38 3.4E-43 295.5 13.3 224 33-289 7-243 (253)
21 3eu9_A Huntingtin-interacting 100.0 2.4E-37 8.3E-42 282.8 21.1 227 2-258 10-238 (240)
22 3b7b_A Euchromatic histone-lys 100.0 4.1E-37 1.4E-41 281.4 19.6 213 31-271 6-218 (237)
23 2fo1_E LIN-12 protein; beta-ba 100.0 8E-38 2.7E-42 306.2 15.8 225 2-256 126-372 (373)
24 1s70_B 130 kDa myosin-binding 100.0 3.8E-37 1.3E-41 291.8 19.9 242 7-271 4-273 (299)
25 1s70_B 130 kDa myosin-binding 100.0 2.5E-37 8.6E-42 293.0 17.8 219 2-251 41-285 (299)
26 2dzn_A Probable 26S proteasome 100.0 7.1E-37 2.4E-41 278.0 20.1 209 36-271 2-216 (228)
27 1k1a_A B-cell lymphoma 3-encod 100.0 1E-36 3.5E-41 279.3 21.1 211 33-271 6-224 (241)
28 2xai_A ASB-9, ankyrin repeat a 100.0 7.4E-37 2.5E-41 284.3 19.5 206 35-271 2-207 (261)
29 2fo1_E LIN-12 protein; beta-ba 100.0 4E-38 1.4E-42 308.3 9.8 244 2-271 95-354 (373)
30 3kea_A K1L; tropism, ANK repea 100.0 6.7E-37 2.3E-41 288.4 17.2 217 2-260 32-251 (285)
31 3utm_A Tankyrase-1; tankyrase, 100.0 6.4E-36 2.2E-40 289.2 23.5 220 2-256 59-335 (351)
32 3aji_A 26S proteasome non-ATPa 100.0 4.8E-36 1.6E-40 273.2 18.5 209 35-271 5-213 (231)
33 4g8k_A 2-5A-dependent ribonucl 100.0 1.1E-35 3.7E-40 286.9 22.0 226 2-259 60-330 (337)
34 1ikn_D Protein (I-kappa-B-alph 100.0 3.8E-36 1.3E-40 275.1 12.8 209 34-269 6-225 (236)
35 4b93_B Ankyrin repeat domain-c 100.0 6.5E-36 2.2E-40 279.0 13.8 209 35-271 10-226 (269)
36 2rfa_A Transient receptor pote 100.0 2.7E-35 9.2E-40 268.5 17.6 203 36-260 3-227 (232)
37 3ljn_A Hypothetical protein; a 100.0 1.2E-35 4.2E-40 289.6 14.4 212 34-271 18-252 (364)
38 3kea_A K1L; tropism, ANK repea 100.0 1.6E-35 5.5E-40 278.9 14.0 216 9-260 7-225 (285)
39 1ikn_D Protein (I-kappa-B-alph 100.0 1.5E-35 5.2E-40 271.1 13.3 210 2-233 9-226 (236)
40 2rfa_A Transient receptor pote 100.0 1.4E-34 4.8E-39 263.8 18.7 196 2-211 4-221 (232)
41 3hra_A Ankyrin repeat family p 100.0 3.6E-34 1.2E-38 255.0 19.6 198 35-253 4-201 (201)
42 2f8y_A Notch homolog 1, transl 100.0 9.7E-34 3.3E-38 256.5 21.1 190 2-211 26-215 (223)
43 3hra_A Ankyrin repeat family p 100.0 1.1E-33 3.7E-38 251.9 19.8 191 2-210 6-201 (201)
44 2etb_A Transient receptor pote 100.0 1.6E-34 5.5E-39 267.6 11.4 194 36-257 2-248 (256)
45 3eu9_A Huntingtin-interacting 100.0 1.1E-33 3.6E-38 258.6 14.3 211 34-271 7-218 (240)
46 4gpm_A Engineered protein OR26 100.0 4.9E-33 1.7E-37 240.5 17.4 155 38-211 6-160 (169)
47 2pnn_A Transient receptor pote 100.0 5.1E-34 1.7E-38 266.8 11.7 212 2-230 14-271 (273)
48 2pnn_A Transient receptor pote 100.0 4.6E-34 1.6E-38 267.1 10.8 211 33-263 10-267 (273)
49 2etb_A Transient receptor pote 100.0 3.5E-33 1.2E-37 258.6 14.8 198 2-211 3-245 (256)
50 4gpm_A Engineered protein OR26 100.0 2.4E-32 8.2E-37 236.2 14.8 159 72-258 6-164 (169)
51 3jxi_A Vanilloid receptor-rela 100.0 1.1E-32 3.7E-37 255.8 13.5 198 2-211 6-249 (260)
52 1sw6_A Regulatory protein SWI6 100.0 3.6E-33 1.2E-37 268.1 10.1 230 12-271 58-324 (327)
53 1sw6_A Regulatory protein SWI6 100.0 2.9E-32 9.9E-37 261.8 13.4 198 4-233 100-323 (327)
54 3jxi_A Vanilloid receptor-rela 100.0 5.7E-33 2E-37 257.7 7.4 204 35-259 4-254 (260)
55 3v30_A DNA-binding protein rfx 100.0 2.6E-31 8.7E-36 230.7 14.7 154 3-160 4-157 (172)
56 3v30_A DNA-binding protein rfx 100.0 1.4E-30 4.8E-35 226.0 18.3 142 36-185 2-143 (172)
57 4hbd_A KN motif and ankyrin re 100.0 1.4E-31 4.9E-36 250.7 12.0 191 3-210 78-273 (276)
58 2vge_A RELA-associated inhibit 100.0 2.3E-32 7.7E-37 248.8 3.4 203 17-249 1-207 (229)
59 4hbd_A KN motif and ankyrin re 100.0 4.3E-31 1.5E-35 247.4 10.5 191 36-253 76-273 (276)
60 1ihb_A P18-INK4C(INK6), cyclin 100.0 4.4E-30 1.5E-34 220.4 15.7 156 1-161 5-160 (162)
61 2rfm_A Putative ankyrin repeat 100.0 2.8E-30 9.5E-35 228.3 14.0 160 32-210 31-190 (192)
62 3v31_A Ankyrin repeat family A 100.0 7.4E-30 2.5E-34 220.3 15.7 157 36-211 3-159 (167)
63 1ihb_A P18-INK4C(INK6), cyclin 100.0 6.3E-30 2.2E-34 219.4 14.8 157 35-211 4-161 (162)
64 3f6q_A Integrin-linked protein 100.0 1.9E-29 6.5E-34 220.4 17.4 168 35-226 4-171 (179)
65 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.6E-29 5.6E-34 218.7 16.1 157 35-210 13-169 (169)
66 1awc_B Protein (GA binding pro 100.0 2.8E-29 9.4E-34 213.5 16.9 150 2-157 3-152 (153)
67 3twr_A Tankyrase-2; ankyrin re 100.0 1.6E-29 5.3E-34 217.8 15.6 159 34-211 6-164 (165)
68 2rfm_A Putative ankyrin repeat 100.0 5.8E-30 2E-34 226.3 12.7 163 63-253 28-190 (192)
69 2y1l_E Darpin-8.4; hydrolase-i 100.0 6E-29 2E-33 215.2 18.2 154 2-160 15-168 (169)
70 3v31_A Ankyrin repeat family A 100.0 2.3E-29 7.8E-34 217.2 13.3 162 69-258 2-163 (167)
71 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.1E-28 3.8E-33 210.3 16.2 153 2-160 3-155 (156)
72 1ycs_B 53BP2, P53BP2; ankyrin 100.0 3.6E-30 1.2E-34 235.9 7.2 214 2-233 6-225 (239)
73 3f6q_A Integrin-linked protein 100.0 7.1E-29 2.4E-33 216.8 14.7 166 68-260 3-168 (179)
74 1awc_B Protein (GA binding pro 100.0 1.3E-28 4.5E-33 209.3 15.4 151 36-206 2-152 (153)
75 3twr_A Tankyrase-2; ankyrin re 100.0 6E-29 2E-33 214.1 12.2 161 66-254 4-164 (165)
76 1bd8_A P19INK4D CDK4/6 inhibit 100.0 5.5E-28 1.9E-32 206.0 14.7 154 36-209 2-155 (156)
77 1ycs_B 53BP2, P53BP2; ankyrin 100.0 8.9E-29 3E-33 226.6 8.3 173 35-233 4-188 (239)
78 2vge_A RELA-associated inhibit 99.9 2.1E-29 7.2E-34 229.1 3.4 192 52-274 1-199 (229)
79 2aja_A Ankyrin repeat family p 99.9 1.6E-29 5.6E-34 245.7 2.7 223 2-252 93-341 (376)
80 3t8k_A Uncharacterized protein 99.9 3.2E-27 1.1E-31 207.4 11.2 155 3-163 8-179 (186)
81 2aja_A Ankyrin repeat family p 99.9 3.8E-28 1.3E-32 236.1 0.9 174 4-211 68-249 (376)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 1.4E-26 4.8E-31 197.5 9.5 140 33-182 9-149 (156)
83 3t8k_A Uncharacterized protein 99.9 9.5E-27 3.2E-31 204.4 7.1 156 36-211 6-178 (186)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 3.3E-26 1.1E-30 195.1 9.7 145 64-233 6-151 (156)
85 1d9s_A Cyclin-dependent kinase 99.9 1.4E-25 4.8E-30 186.6 12.4 125 33-161 9-134 (136)
86 1d9s_A Cyclin-dependent kinase 99.9 1E-25 3.5E-30 187.5 10.4 132 60-211 3-135 (136)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 7.7E-25 2.6E-29 182.1 13.5 123 35-160 13-135 (136)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.1E-24 7.3E-29 176.3 14.6 123 36-161 2-124 (126)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 3.4E-24 1.2E-28 178.2 10.9 128 65-210 9-136 (136)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.9 8.9E-24 3E-28 172.6 12.8 125 69-211 1-125 (126)
91 3c5r_A BARD-1, BRCA1-associate 99.9 6.5E-24 2.2E-28 176.6 11.1 128 65-210 5-132 (137)
92 3deo_A Signal recognition part 99.9 2.1E-23 7.3E-28 182.6 12.3 138 35-209 43-181 (183)
93 2b0o_E UPLC1; arfgap, structur 99.9 1.7E-23 5.8E-28 197.9 12.5 136 35-185 150-294 (301)
94 2b0o_E UPLC1; arfgap, structur 99.9 8E-23 2.7E-27 193.3 16.4 140 3-151 153-299 (301)
95 3ui2_A Signal recognition part 99.9 1.9E-23 6.4E-28 191.7 11.5 140 35-211 44-184 (244)
96 3ui2_A Signal recognition part 99.9 3.7E-23 1.3E-27 189.8 13.3 138 2-162 46-184 (244)
97 3aaa_C Myotrophin, protein V-1 99.9 2.2E-23 7.5E-28 170.0 10.3 115 35-152 6-120 (123)
98 3deo_A Signal recognition part 99.9 5.7E-23 2E-27 179.9 13.2 135 2-159 45-180 (183)
99 3c5r_A BARD-1, BRCA1-associate 99.9 1.8E-23 6.2E-28 173.9 7.9 130 99-255 5-134 (137)
100 3ehr_A Osteoclast-stimulating 99.9 2.6E-23 8.8E-28 187.9 9.2 139 65-226 68-206 (222)
101 3ehr_A Osteoclast-stimulating 99.9 3.9E-23 1.3E-27 186.7 9.6 125 35-162 72-197 (222)
102 3aaa_C Myotrophin, protein V-1 99.9 1.9E-22 6.5E-27 164.4 10.2 115 67-192 4-118 (123)
103 3jue_A Arfgap with coiled-coil 99.9 1.1E-21 3.8E-26 189.8 13.8 146 36-190 199-347 (368)
104 1dcq_A PYK2-associated protein 99.9 7.8E-22 2.7E-26 184.4 12.3 126 36-163 130-263 (278)
105 3jue_A Arfgap with coiled-coil 99.8 3.8E-21 1.3E-25 186.1 13.2 145 2-148 200-347 (368)
106 1n0q_A 3ANK, 3 ankyrin repeats 99.8 7.4E-21 2.5E-25 146.8 11.5 91 36-128 2-92 (93)
107 3lvq_E ARF-GAP with SH3 domain 99.8 9.5E-21 3.2E-25 191.8 14.9 125 3-129 134-265 (497)
108 3lvq_E ARF-GAP with SH3 domain 99.8 1E-20 3.5E-25 191.6 13.9 132 36-182 132-272 (497)
109 1dcq_A PYK2-associated protein 99.8 1.6E-20 5.6E-25 175.4 12.9 128 104-257 130-265 (278)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.8 3.7E-20 1.3E-24 142.9 10.0 90 69-160 1-90 (93)
111 2l6b_A NR1C; ankyrin, consensu 99.8 2.8E-20 9.7E-25 149.5 7.9 106 67-180 6-111 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1.3E-19 4.5E-24 145.6 8.2 109 99-230 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 8.9E-18 3E-22 133.8 10.2 87 35-123 23-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 1.4E-17 4.8E-22 132.6 9.5 93 63-157 17-109 (110)
115 2jwa_A Receptor tyrosine-prote 58.9 21 0.0007 22.0 4.5 14 427-440 29-42 (44)
116 2l2t_A Receptor tyrosine-prote 53.0 22 0.00076 21.9 4.0 12 428-439 29-40 (44)
117 3mkq_B Coatomer subunit alpha; 51.1 99 0.0034 25.5 9.1 131 2-160 9-140 (177)
118 3mkq_B Coatomer subunit alpha; 44.3 1.3E+02 0.0046 24.7 10.0 106 36-160 8-115 (177)
119 2lx0_A Membrane fusion protein 42.0 38 0.0013 18.2 3.3 16 422-437 16-31 (32)
120 2ks1_B Epidermal growth factor 34.4 31 0.0011 21.2 2.6 10 429-438 31-40 (44)
121 3zrh_A Ubiquitin thioesterase 32.2 63 0.0021 30.5 5.4 23 69-91 68-90 (454)
122 1gp8_A Protein (scaffolding pr 31.4 20 0.00068 21.2 1.2 17 4-20 16-32 (40)
123 3zrh_A Ubiquitin thioesterase 28.9 1.2E+02 0.0039 28.8 6.6 52 7-58 28-91 (454)
124 1iij_A ERBB-2 receptor protein 27.2 66 0.0023 18.7 3.0 15 422-436 20-34 (35)
125 2iub_A CORA, divalent cation t 24.2 49 0.0017 30.9 3.4 22 380-401 303-324 (363)
126 4ev6_A Magnesium transport pro 23.7 54 0.0018 30.2 3.5 20 381-400 280-299 (339)
127 3gvo_A Pumilio 2, pumilio homo 20.1 1.9E+02 0.0065 26.5 6.6 94 32-125 69-166 (351)
No 1
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.1e-40 Score=302.13 Aligned_cols=224 Identities=20% Similarity=0.313 Sum_probs=210.3
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
++|||.|++.|+.+.++.|++.++...... +..|.||||+|+..|+.+++++|+++|.++ +..|..|+||||+|+..|
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHT
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcC-CCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHcC
Confidence 689999999999999999999887654333 345999999999999999999999999987 888999999999999999
Q ss_pred cHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHH
Q 042799 82 HTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWI 161 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~ 161 (449)
+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++
T Consensus 85 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~- 161 (231)
T 3aji_A 85 XDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFY- 161 (231)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-
T ss_pred HHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-
Confidence 999999999999998 88999999999999999999999999999887 888999999999999999999999999987
Q ss_pred HhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcC
Q 042799 162 REMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAG 241 (449)
Q Consensus 162 ~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~ 241 (449)
+.+++.+|..|+|||| +|+..++ .+++++|+++|+ +++.+|..|.||+|+| ...+
T Consensus 162 -----g~~~~~~~~~g~t~L~---~A~~~~~-------~~~v~~Ll~~ga------~~~~~~~~g~t~l~~A----~~~~ 216 (231)
T 3aji_A 162 -----KASTNIQDTEGNTPLH---LACDEER-------VEEAKFLVTQGA------SIYIENKEEKTPLQVA----KGGL 216 (231)
T ss_dssp -----TCCSCCCCTTSCCHHH---HHHHTTC-------HHHHHHHHHTTC------CSCCCCTTSCCHHHHS----CHHH
T ss_pred -----CCCccccCCCCCCHHH---HHHHCCC-------HHHHHHHHHCCC------CCCCCCCCCCCHHHHH----HhhH
Confidence 7889999999999999 9999999 999999999998 8999999999999999 7788
Q ss_pred hhHHHHHHHHcCCC
Q 042799 242 DREIEEILRSAGAT 255 (449)
Q Consensus 242 ~~~i~~~Ll~~ga~ 255 (449)
+.+++++|.++|++
T Consensus 217 ~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 217 GLILKRLAEGEEAS 230 (231)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHcccccc
Confidence 99999999998876
No 2
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6e-40 Score=303.74 Aligned_cols=223 Identities=18% Similarity=0.232 Sum_probs=182.0
Q ss_pred CHHHHHHHHhC-------------CHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCC
Q 042799 2 DRKLFEATQAG-------------NVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQ 68 (449)
Q Consensus 2 dt~L~~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~ 68 (449)
.||||.|+..| +.++++.|++.+++..... +..|.||||+|+..|+.+++++|+++|+++ +..|.
T Consensus 11 ~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~ 88 (253)
T 1yyh_A 11 FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEASADA-NIQDN 88 (253)
T ss_dssp -----------------------------------------CC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred CcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC
Confidence 59999999987 8999999999998875443 345999999999999999999999999998 88899
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHh
Q 042799 69 DGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKS 148 (449)
Q Consensus 69 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 148 (449)
.|+||||+|+..|+.+++++|+++++...+.+|.+|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+|+..
T Consensus 89 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~ 167 (253)
T 1yyh_A 89 MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAV 167 (253)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TTCBCTTSCBHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence 9999999999999999999999999844488999999999999999999999999999887 889999999999999999
Q ss_pred CCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCC
Q 042799 149 SQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLT 228 (449)
Q Consensus 149 ~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T 228 (449)
|+.+++++|+++ +.+++.+|..|+|||| +|+..++ .+++++|+++|+ +++.+|..|.|
T Consensus 168 ~~~~~v~~Ll~~------ga~~~~~~~~g~tpL~---~A~~~~~-------~~~v~~Ll~~ga------~~~~~d~~g~t 225 (253)
T 1yyh_A 168 NNVDAAVVLLKN------GANKDMQNNREETPLF---LAAREGS-------YETAKVLLDHFA------NRDITDHMDRL 225 (253)
T ss_dssp TCHHHHHHHHHT------TCCTTCCCTTSCCHHH---HHHHHTC-------HHHHHHHHHTTC------CTTCCCTTCCC
T ss_pred CCHHHHHHHHHc------CCCCCCcCCCCCCHHH---HHHHCCC-------HHHHHHHHHcCC------CccccccCCCC
Confidence 999999999987 7889999999999999 9999999 999999999999 89999999999
Q ss_pred hHHHHhhCCCCcChhHHHHHHHHcC
Q 042799 229 AIDLLLIFPSEAGDREIEEILRSAG 253 (449)
Q Consensus 229 ~l~~A~~~~~~~~~~~i~~~Ll~~g 253 (449)
|+|+| ...++.+++++|.+..
T Consensus 226 pl~~A----~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 226 PRDIA----QERMHHDIVRLLDLEH 246 (253)
T ss_dssp HHHHH----HHTTCHHHHHHHHC--
T ss_pred HHHHH----HHcCCHHHHHHHHHHh
Confidence 99999 7889999999997653
No 3
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=305.93 Aligned_cols=239 Identities=18% Similarity=0.207 Sum_probs=195.9
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccc---------cccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCc
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLI---------LHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFS 72 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~---------~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 72 (449)
+|+||.|++.|+.+.+..++..++.. .....+..|+||||+|+..|+.+++++|+++|.++ +..|.+|+|
T Consensus 16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~t 94 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVS 94 (285)
T ss_dssp --------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCCC
T ss_pred HHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCC
Confidence 68999999999988888876654321 01223445999999999999999999999999987 889999999
Q ss_pred HHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHh
Q 042799 73 PMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYG 152 (449)
Q Consensus 73 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~ 152 (449)
|||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.+.+ ++. +.+|.||||+|+..|+.+
T Consensus 95 ~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~-~~~g~t~L~~A~~~g~~~ 171 (285)
T 3d9h_A 95 PLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGAS-VQP-ESDLASPIHEAARRGHVE 171 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSC-SCTTSCHHHHHHHHTCHH
T ss_pred HHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC-CCC-CCCCCCHHHHHHHcCCHH
Confidence 999999999999999999999998 88999999999999999999999999999876 443 456999999999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHH
Q 042799 153 VIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDL 232 (449)
Q Consensus 153 ~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~ 232 (449)
++++|+++ +.+++.+|.+|+|||| +|+..++ .+++++|+++|+ +++. |..|.||||+
T Consensus 172 ~v~~Ll~~------g~~~~~~d~~g~t~L~---~A~~~~~-------~~~v~~Ll~~ga------~~~~-~~~g~t~L~~ 228 (285)
T 3d9h_A 172 CVNSLIAY------GGNIDHKISHLGTPLY---LACENQQ-------RACVKKLLESGA------DVNQ-GKGQDSPLHA 228 (285)
T ss_dssp HHHHHHHT------TCCTTCCBTTTBCHHH---HHHHTTC-------HHHHHHHHHTTC------CTTC-CBTTBCHHHH
T ss_pred HHHHHHHC------CCCCCCcCCCCCCHHH---HHHHcCc-------HHHHHHHHHCCC------CCCC-CCCCCCHHHH
Confidence 99999987 7889999999999999 9999999 999999999998 7774 8899999999
Q ss_pred HhhCCCCcChhHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 042799 233 LLIFPSEAGDREIEEILRSAGATGMGDDNQTSTGNPPAS 271 (449)
Q Consensus 233 A~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~ 271 (449)
| ...++.+++++|+++|++++.++..|.||.+.+.
T Consensus 229 A----~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~ 263 (285)
T 3d9h_A 229 V----VRTASEELACLLMDFGADTQAKNAEGKRPVELVP 263 (285)
T ss_dssp H----HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC
T ss_pred H----HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc
Confidence 9 6788999999999999999999999999999887
No 4
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.9e-39 Score=300.59 Aligned_cols=235 Identities=18% Similarity=0.217 Sum_probs=208.9
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
.||||.|++.|+.++++.|++.+.+++. .+..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|
T Consensus 4 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 4 WSPMHEAAIHGHQLSLRNLISQGWAVNI--ITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSG 80 (261)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSSC--CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcC
Confidence 5999999999999999999999887643 3345999999999999999999999999987 889999999999999999
Q ss_pred cHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHH
Q 042799 82 HTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWI 161 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~ 161 (449)
+.+++++|+++|+++ + .+.+|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++.
T Consensus 81 ~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~- 156 (261)
T 2xai_A 81 SWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLES- 156 (261)
T ss_dssp CHHHHHHHHHTTCCS-S-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHH-
T ss_pred CHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHhCCHHHHHHHHHc-
Confidence 999999999999987 4 356699999999999999999999999887 889999999999999999999999999998
Q ss_pred HhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcC
Q 042799 162 REMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAG 241 (449)
Q Consensus 162 ~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~ 241 (449)
+.++|. |..|+|||| .|+..++ .+++++|+++|+ +++.+|.+|+||+|+| . .
T Consensus 157 -----g~~~~~-~~~g~t~Lh---~A~~~~~-------~~~v~~Ll~~ga------d~~~~d~~g~tpl~~A----~--~ 208 (261)
T 2xai_A 157 -----GADVNQ-GKGQDSPLH---AVARTAS-------EELACLLMDFGA------DTQAKNAEGKRPVELV----P--P 208 (261)
T ss_dssp -----TCCTTC-CBTTBCHHH---HHHHHTC-------HHHHHHHHHTTC------CTTCCCTTSCCGGGGS----C--T
T ss_pred -----CCCCCC-CCCCCChHH---HHHHcCC-------HHHHHHHHHcCC------CCCCcCCCCCChhhhc----c--c
Confidence 666774 899999999 9999999 999999999999 8999999999999999 4 3
Q ss_pred hhHHHHHHHHcCCCCC--------CCCCCCCCCCCCCC
Q 042799 242 DREIEEILRSAGATGM--------GDDNQTSTGNPPAS 271 (449)
Q Consensus 242 ~~~i~~~Ll~~ga~~~--------~~~~~~~~~~~~~~ 271 (449)
+.+++++|+++++.+. .++..|.++.+.+.
T Consensus 209 ~~~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~ 246 (261)
T 2xai_A 209 ESPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKIT 246 (261)
T ss_dssp TCTHHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGG
T ss_pred cccHHHHHHhccCCccHHHHHHHHHHHHhchhccccCc
Confidence 4569999999887643 44556666655443
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.1e-39 Score=302.22 Aligned_cols=245 Identities=20% Similarity=0.170 Sum_probs=219.0
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
+|+||.|++.|+.+.++.|++.++++.... +..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 83 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAG 83 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcC
Confidence 489999999999999999999998775442 345999999999999999999999999987 888999999999999999
Q ss_pred cHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCccccc----------ccCCCcHHHHHHHhCCH
Q 042799 82 HTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDV----------TIQHYTALHLAIKSSQY 151 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~----------d~~g~t~Lh~A~~~~~~ 151 (449)
+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+.+ ++.. +..|.||||+|+..|+.
T Consensus 84 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~ 161 (285)
T 1wdy_A 84 SVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATALMDAAEKGHV 161 (285)
T ss_dssp CHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred CHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCC-cccccccHHHHHhhccCCCcHHHHHHHcCCH
Confidence 999999999999998 88999999999999999999999999999876 5544 78899999999999999
Q ss_pred hHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHH
Q 042799 152 GVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAID 231 (449)
Q Consensus 152 ~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~ 231 (449)
+++++|++. .+.+++.+|..|+|||| .|+..++... ..+++++|+++|+ +++.+|..|.||||
T Consensus 162 ~~v~~Ll~~-----~~~~~~~~~~~g~t~l~---~a~~~~~~~~---~~~i~~~Ll~~g~------~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 162 EVLKILLDE-----MGADVNACDNMGRNALI---HALLSSDDSD---VEAITHLLLDHGA------DVNVRGERGKTPLI 224 (285)
T ss_dssp HHHHHHHHT-----SCCCTTCCCTTSCCHHH---HHHHCSCTTT---HHHHHHHHHHTTC------CSSCCCTTSCCHHH
T ss_pred HHHHHHHHh-----cCCCCCccCCCCCCHHH---HHHHccccch---HHHHHHHHHHcCC------CCCCcCCCCCcHHH
Confidence 999999986 47788999999999999 8887765111 1678999999998 89999999999999
Q ss_pred HHhhCCCCcChhHHHHHHHH-cCCCCCCCCCCCCCCCCCCC
Q 042799 232 LLLIFPSEAGDREIEEILRS-AGATGMGDDNQTSTGNPPAS 271 (449)
Q Consensus 232 ~A~~~~~~~~~~~i~~~Ll~-~ga~~~~~~~~~~~~~~~~~ 271 (449)
+| ...++.+++++|++ .|++++..+..|.||.+.+.
T Consensus 225 ~A----~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~ 261 (285)
T 1wdy_A 225 LA----VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261 (285)
T ss_dssp HH----HHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHH
T ss_pred HH----HHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHH
Confidence 99 67789999999999 89999999999999888776
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.9e-39 Score=312.75 Aligned_cols=240 Identities=27% Similarity=0.304 Sum_probs=216.6
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
+|+||.|++.|+.+.++.|+....... ...+..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g 102 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLNVNC-HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYG 102 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTC-CCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred chhHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHCC
Confidence 489999999999999999998643322 223345999999999999999999999999997 889999999999999999
Q ss_pred cHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccc----------------------------
Q 042799 82 HTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVED---------------------------- 133 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~---------------------------- 133 (449)
+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++++.+ ++.
T Consensus 103 ~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~ 180 (351)
T 3utm_A 103 HYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFKGH 180 (351)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCcchHHHhhhhhHHHHHhhhccc
Confidence 999999999999998 88999999999999999999999999998766 332
Q ss_pred --------------------------cccCCCcHHHHHHHh---CCHhHHHHHHHHHHhhccccccccccCCCCCcccch
Q 042799 134 --------------------------VTIQHYTALHLAIKS---SQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSY 184 (449)
Q Consensus 134 --------------------------~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~ 184 (449)
.+..|+||||+|+.. ++.+++++|++. +.++|.+|.+|+||||
T Consensus 181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~------g~~~~~~~~~g~t~L~-- 252 (351)
T 3utm_A 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK------GANVNEKNKDFMTPLH-- 252 (351)
T ss_dssp HHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT------TCCTTCCCTTCCCHHH--
T ss_pred HHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc------CCCcCCcCCCCCCHHH--
Confidence 345678999999999 557899999987 7889999999999999
Q ss_pred hhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcCCCCCCCCCCCC
Q 042799 185 DLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGATGMGDDNQTS 264 (449)
Q Consensus 185 ~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~ 264 (449)
+|+..++ .+++++|+++|+ ++|.+|..|+||||+| ...++.+++++|+++|++++..+..|.
T Consensus 253 -~A~~~g~-------~~~v~~Ll~~ga------~~n~~d~~g~t~L~~A----~~~~~~~~v~~Ll~~gad~~~~~~~g~ 314 (351)
T 3utm_A 253 -VAAERAH-------NDVMEVLHKHGA------KMNALDSLGQTALHRA----ALAGHLQTCRLLLSYGSDPSIISLQGF 314 (351)
T ss_dssp -HHHHTTC-------HHHHHHHHHTTC------CTTCCCTTSCCHHHHH----HHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred -HHHHcCC-------HHHHHHHHHCCC------CCCCcCCCCCCHHHHH----HHcCcHHHHHHHHHcCCCCCCcCCCCC
Confidence 9999999 999999999998 9999999999999999 678999999999999999999999999
Q ss_pred CCCCCCC
Q 042799 265 TGNPPAS 271 (449)
Q Consensus 265 ~~~~~~~ 271 (449)
|+.+.+.
T Consensus 315 tal~~a~ 321 (351)
T 3utm_A 315 TAAQMGN 321 (351)
T ss_dssp CHHHHSC
T ss_pred Chhhhhh
Confidence 8877663
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-38 Score=298.88 Aligned_cols=229 Identities=24% Similarity=0.275 Sum_probs=211.9
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
.||||.|++.|+.+++++|++.+.++... +..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|
T Consensus 40 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 116 (285)
T 1wdy_A 40 WTPLHNAVQMSREDIVELLLRHGADPVLR--KKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYG 116 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTT
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhC
Confidence 48999999999999999999998876443 345999999999999999999999999997 888999999999999999
Q ss_pred cHHHHHHHHHcCccccccc----------CCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCC-
Q 042799 82 HTEVVRELLKVDRKLCQLQ----------GPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQ- 150 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~----------d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~- 150 (449)
+.+++++|+++|+++ +.. +..|.||||.|+..|+.+++++|++..+..++..|..|+||||+|+..++
T Consensus 117 ~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~ 195 (285)
T 1wdy_A 117 KVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195 (285)
T ss_dssp CHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT
T ss_pred CHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc
Confidence 999999999999887 554 78899999999999999999999998555589999999999999999999
Q ss_pred ---HhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhh-CccccccCccccccCCCC
Q 042799 151 ---YGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLG-HQANASQGLEVNAINHSG 226 (449)
Q Consensus 151 ---~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~n~~g 226 (449)
.+++++|++. +.+++.+|..|+|||| +|+..++ .+++++|++ .|+ +++.+|..|
T Consensus 196 ~~~~~i~~~Ll~~------g~~~~~~~~~g~t~L~---~A~~~~~-------~~~v~~Ll~~~g~------~~~~~~~~g 253 (285)
T 1wdy_A 196 SDVEAITHLLLDH------GADVNVRGERGKTPLI---LAVEKKH-------LGLVQRLLEQEHI------EINDTDSDG 253 (285)
T ss_dssp TTHHHHHHHHHHT------TCCSSCCCTTSCCHHH---HHHHTTC-------HHHHHHHHHSSSC------CTTCCCTTS
T ss_pred chHHHHHHHHHHc------CCCCCCcCCCCCcHHH---HHHHcCC-------HHHHHHHHhccCC------CccccCCCC
Confidence 8899999987 7889999999999999 9999999 999999999 777 899999999
Q ss_pred CChHHHHhhCCCCcChhHHHHHHHHcCCCCCCCC
Q 042799 227 LTAIDLLLIFPSEAGDREIEEILRSAGATGMGDD 260 (449)
Q Consensus 227 ~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~~~ 260 (449)
.||||+| ...++.+++++|+++|++++.++
T Consensus 254 ~t~l~~A----~~~~~~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 254 KTALLLA----VELKLKKIAELLCKRGASTDCGD 283 (285)
T ss_dssp CCHHHHH----HHTTCHHHHHHHHHHSSCSCCSS
T ss_pred CcHHHHH----HHcCcHHHHHHHHHcCCCCCccc
Confidence 9999999 67889999999999999998875
No 8
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=5e-39 Score=294.68 Aligned_cols=222 Identities=17% Similarity=0.189 Sum_probs=192.2
Q ss_pred CHHHHHHHHhCCHHHHHHHHh----cCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHH
Q 042799 2 DRKLFEATQAGNVQSLHQLLG----ENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMA 77 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~----~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 77 (449)
+||||.|++.|+.++++.|++ .+.++.. .+..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|
T Consensus 10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI--YNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLA 86 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc--ccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHH
Confidence 589999999999999999987 4444432 2345999999999999999999999999887 78899999999999
Q ss_pred HHcCcHHHHHHHHHcCc----ccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccc-cCCCcHHHHHHHhCCHh
Q 042799 78 SSIGHTEVVRELLKVDR----KLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVT-IQHYTALHLAIKSSQYG 152 (449)
Q Consensus 78 a~~g~~~iv~~Ll~~~~----~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~ 152 (449)
+..|+.+++++|+++++ ++ +..|..|.||||+|+..|+.+++++|++.+.+ ++..+ ..|+||||+|+..|+.+
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~~~~~ 164 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGAD-IDAVDIKSGRSPLIHAVENNSLS 164 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC-cccccccCCCcHHHHHHHcCCHH
Confidence 99999999999999987 55 77888999999999999999999999999887 66666 78999999999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHH
Q 042799 153 VIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDL 232 (449)
Q Consensus 153 ~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~ 232 (449)
++++|+++ +.+++.+|.+|+|||| +|+..++ .+++++|+++|+ +++.+|..|.||+|+
T Consensus 165 ~v~~Ll~~------g~~~~~~~~~g~t~L~---~A~~~~~-------~~~v~~Ll~~ga------~~~~~~~~g~tpl~~ 222 (241)
T 1k1a_A 165 MVQLLLQH------GANVNAQMYSGSSALH---SASGRGL-------LPLVRTLVRSGA------DSSLKNCHNDTPLMV 222 (241)
T ss_dssp HHHHHHHT------TCCTTCBCTTSCBHHH---HHHHHTC-------HHHHHHHHHTTC------CTTCCCTTSCCTTTT
T ss_pred HHHHHHHc------CCCCCCcCCCCCCHHH---HHHHcCC-------HHHHHHHHhcCC------CCCCcCCCCCCHHHH
Confidence 99999987 7788999999999999 9999999 999999999998 899999999999999
Q ss_pred HhhCCCCcChhHHHHHHHHcCC
Q 042799 233 LLIFPSEAGDREIEEILRSAGA 254 (449)
Q Consensus 233 A~~~~~~~~~~~i~~~Ll~~ga 254 (449)
| ...++.++++.|.+.++
T Consensus 223 A----~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 223 A----RSRRVIDILRGKATRPA 240 (241)
T ss_dssp C----SSHHHHHHHTC------
T ss_pred H----HhcCcHHHHhhhccCCC
Confidence 9 78899999999887664
No 9
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.2e-38 Score=289.76 Aligned_cols=218 Identities=19% Similarity=0.242 Sum_probs=198.2
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhC--CCcccccCCCCCcHHHHHHH
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLR--PDMAQEVNQDGFSPMHMASS 79 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~Aa~ 79 (449)
+||||.|++.|+.+.++.|++.+++..... +..|.||||+|+..|+.+++++|++++ +++....|..|+||||+|+.
T Consensus 3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 3 NYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred ccHHHHHHHhCCHHHHHHHHhcCccccccC-CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 699999999999999999999998765433 345999999999999999999999999 66533388999999999999
Q ss_pred cCcHHHHHHHHHcC--cccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHH
Q 042799 80 IGHTEVVRELLKVD--RKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAII 157 (449)
Q Consensus 80 ~g~~~iv~~Ll~~~--~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L 157 (449)
.|+.+++++|+++| +++ +.+|..|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L 159 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELL 159 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999998 666 88899999999999999999999999999877 889999999999999999999999999
Q ss_pred HHHHHhhccc-cccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHh-hCccccccCccccccCCCCCChHHHHhh
Q 042799 158 VDWIREMKKE-HIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLL-GHQANASQGLEVNAINHSGLTAIDLLLI 235 (449)
Q Consensus 158 l~~~~~~~~~-~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll-~~ga~~~~~~~~~~~n~~g~T~l~~A~~ 235 (449)
++. + .+++.+|..|+|||| +|+..++ .+++++|+ ++|+ +++.+|..|.||+|+|
T Consensus 160 l~~------g~~~~~~~d~~g~t~L~---~A~~~~~-------~~~v~~Ll~~~ga------~~~~~~~~g~t~l~~A-- 215 (228)
T 2dzn_A 160 CGL------GKSAVNWQDKQGWTPLF---HALAEGH-------GDAAVLLVEKYGA------EYDLVDNKGAKAEDVA-- 215 (228)
T ss_dssp HTT------TCCCSCCCCTTSCCHHH---HHHHTTC-------HHHHHHHHHHHCC------CSCCBCTTSCBGGGGC--
T ss_pred Hhc------CcccccCcCCCCCCHHH---HHHHcCC-------HHHHHHHHHhcCC------CCCccCCCCCcHHHHH--
Confidence 987 5 889999999999999 9999999 99999999 8898 9999999999999999
Q ss_pred CCCCcChhHHHHHHHH
Q 042799 236 FPSEAGDREIEEILRS 251 (449)
Q Consensus 236 ~~~~~~~~~i~~~Ll~ 251 (449)
.. .++.++|++
T Consensus 216 --~~---~~~~~~l~~ 226 (228)
T 2dzn_A 216 --LN---EQVKKFFLN 226 (228)
T ss_dssp --SS---TTHHHHHHT
T ss_pred --HH---HHHHHHHHh
Confidence 33 366677664
No 10
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-38 Score=318.89 Aligned_cols=238 Identities=25% Similarity=0.340 Sum_probs=145.1
Q ss_pred HHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCc
Q 042799 3 RKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGH 82 (449)
Q Consensus 3 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~ 82 (449)
||||.|+..|+.++++.|++.+.+... .+..|.||||+|+..|+.+++++|++++.++ +..+..|.||||+|+..|+
T Consensus 148 t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~ 224 (437)
T 1n11_A 148 TPLHVAAKYGKVRVAELLLERDAHPNA--AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQ 224 (437)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTC--CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCC
Confidence 455555555555555555554443322 1123555555555555555555555555554 4455555566666666666
Q ss_pred HHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHH
Q 042799 83 TEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIR 162 (449)
Q Consensus 83 ~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~ 162 (449)
.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|++.+++ .+..|..|+||||+|+..|+.+++++|+++
T Consensus 225 ~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-- 300 (437)
T 1n11_A 225 VEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKH-- 300 (437)
T ss_dssp HHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--
Confidence 66666666655555 55556666666666666666666666666554 555666666666666666666666666665
Q ss_pred hhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcCh
Q 042799 163 EMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGD 242 (449)
Q Consensus 163 ~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~ 242 (449)
+.+++.+|..|+|||| +|+..++ .+++++|+++|+ ++|.+|..|.||||+| ...++
T Consensus 301 ----g~~~~~~~~~g~t~L~---~A~~~g~-------~~~v~~Ll~~ga------d~n~~~~~g~t~L~~A----~~~g~ 356 (437)
T 1n11_A 301 ----GVMVDATTRMGYTPLH---VASHYGN-------IKLVKFLLQHQA------DVNAKTKLGYSPLHQA----AQQGH 356 (437)
T ss_dssp ----TCCTTCCCSSCCCHHH---HHHHSSC-------SHHHHHHHHTTC------CTTCCCTTSCCHHHHH----HHTTC
T ss_pred ----CccCCCCCCCCCCHHH---HHHHcCc-------HHHHHHHHhcCC------CCCCCCCCCCCHHHHH----HHCCh
Confidence 5566666667777777 6666666 677777777666 6666677777777776 45566
Q ss_pred hHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 042799 243 REIEEILRSAGATGMGDDNQTSTGNPPAS 271 (449)
Q Consensus 243 ~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~ 271 (449)
.+++++|+++|++++..+..|.||.+.+.
T Consensus 357 ~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~ 385 (437)
T 1n11_A 357 TDIVTLLLKNGASPNEVSSDGTTPLAIAK 385 (437)
T ss_dssp HHHHHHHHHTTCCSCCCCSSSCCHHHHHH
T ss_pred HHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence 67777777777777766666666665554
No 11
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-39 Score=300.91 Aligned_cols=225 Identities=23% Similarity=0.285 Sum_probs=172.9
Q ss_pred HHHHHHHHhCCHHHHHHHHhcCcccccc------ccCCCCChHHHHHHHcCCH-HHHHHHHhhCCCcccccCCCCCcHHH
Q 042799 3 RKLFEATQAGNVQSLHQLLGENPLILHT------SALTSAGNPLHVASAYGHI-DFVKEIINLRPDMAQEVNQDGFSPMH 75 (449)
Q Consensus 3 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~------~~~~~g~t~Lh~Aa~~g~~-~~v~~Ll~~~~~~~~~~d~~g~tpLh 75 (449)
++|+.||+.|+.++|+.||+.+...... ..+..|.||||.|+..++. .+++.|++.|.++ +..|.+|+||||
T Consensus 13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpLh 91 (269)
T 4b93_B 13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDGSSPLH 91 (269)
T ss_dssp HHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTTSCCHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCCCCHHH
Confidence 7999999999999999999987653221 1223489999999998876 4889999999998 899999999999
Q ss_pred HHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHH
Q 042799 76 MASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIA 155 (449)
Q Consensus 76 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~ 155 (449)
+|+..|+.+++++|++.++++ +.++.+|.||+|.|+..++.++++.|++.+.+ ++.+|..|+||||+|+..|+.++++
T Consensus 92 ~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~ 169 (269)
T 4b93_B 92 VAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVA 169 (269)
T ss_dssp HHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHH
T ss_pred HHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 999999999999999999998 88999999999999999999999999999887 8999999999999999999999999
Q ss_pred HHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhh
Q 042799 156 IIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLI 235 (449)
Q Consensus 156 ~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~ 235 (449)
+|+++ ++++|.+|..|+|||| +|+..++ .+++++|+++|+ +++.+|..|+||||+|
T Consensus 170 ~Ll~~------gadvn~~~~~g~t~Lh---~A~~~g~-------~~~v~~Ll~~Ga------d~~~~d~~G~TpL~~A-- 225 (269)
T 4b93_B 170 LLLQH------GASINASNNKGNTALH---EAVIEKH-------VFVVELLLLHGA------SVQVLNKRQRTAVDCA-- 225 (269)
T ss_dssp HHHHT------TCCTTCBCTTSCBHHH---HHHHTTC-------HHHHHHHHHTTC------CSCCCCTTSCCSGGGS--
T ss_pred HHHHC------CCCCCccccCCCcHHH---HHHHcCC-------HHHHHHHHHCCC------CCCCcCCCCCCHHHHH--
Confidence 99987 7889999999999999 9999999 999999999999 9999999999999999
Q ss_pred CCCCcCh-hHHHHHHHHcCCCC
Q 042799 236 FPSEAGD-REIEEILRSAGATG 256 (449)
Q Consensus 236 ~~~~~~~-~~i~~~Ll~~ga~~ 256 (449)
.++++ .++++.|.+.++..
T Consensus 226 --~~~~~i~~lL~~l~~~~~~~ 245 (269)
T 4b93_B 226 --EQNSKIMELLQVVPSCVASL 245 (269)
T ss_dssp --CTTCHHHHHTTC--------
T ss_pred --HhCCcHHHHHHHHHHhchhh
Confidence 55554 34444454555443
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.7e-38 Score=297.90 Aligned_cols=222 Identities=20% Similarity=0.250 Sum_probs=199.3
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
.||||.|+..|+.++++.|++.+.+++.. +..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|
T Consensus 60 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~ 136 (285)
T 3d9h_A 60 WSPMHEAAIHGHQLSLRNLISQGWAVNII--TADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSG 136 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCSCEE--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcC
Confidence 48999999999999999999998876543 345999999999999999999999999997 889999999999999999
Q ss_pred cHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHH
Q 042799 82 HTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWI 161 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~ 161 (449)
+.+++++|+++++++ +. +.+|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++.
T Consensus 137 ~~~~v~~Ll~~g~~~-~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~- 212 (285)
T 3d9h_A 137 SWDCVNLLLQHGASV-QP-ESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLES- 212 (285)
T ss_dssp CHHHHHHHHHTTCCS-SC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHT-
T ss_pred HHHHHHHHHHCCCCC-CC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHC-
Confidence 999999999999887 43 45599999999999999999999999887 889999999999999999999999999987
Q ss_pred HhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcC
Q 042799 162 REMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAG 241 (449)
Q Consensus 162 ~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~ 241 (449)
+.+++. |..|+|||| +|+..++ .+++++|+++|+ +++.+|.+|+||+|+| . +
T Consensus 213 -----ga~~~~-~~~g~t~L~---~A~~~~~-------~~~v~~Ll~~ga------d~~~~d~~g~t~l~~A----~--~ 264 (285)
T 3d9h_A 213 -----GADVNQ-GKGQDSPLH---AVVRTAS-------EELACLLMDFGA------DTQAKNAEGKRPVELV----P--P 264 (285)
T ss_dssp -----TCCTTC-CBTTBCHHH---HHHHTTC-------HHHHHHHHHTTC------CTTCCCTTSCCGGGGS----C--T
T ss_pred -----CCCCCC-CCCCCCHHH---HHHHcCC-------HHHHHHHHHCCC------CCCCcCCCCCCHHHHh----c--C
Confidence 666774 899999999 9999999 999999999998 9999999999999999 4 4
Q ss_pred hhHHHHHHHHc-CCCCCC
Q 042799 242 DREIEEILRSA-GATGMG 258 (449)
Q Consensus 242 ~~~i~~~Ll~~-ga~~~~ 258 (449)
+.+++++|+++ |++...
T Consensus 265 ~~~~~~~Ll~~~~a~l~~ 282 (285)
T 3d9h_A 265 ESPLAQLFLEREGASLPK 282 (285)
T ss_dssp TSHHHHHHHHHC------
T ss_pred ccHHHHHHHHhhccCCCC
Confidence 57899999998 776543
No 13
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.8e-38 Score=297.96 Aligned_cols=247 Identities=17% Similarity=0.155 Sum_probs=164.9
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCcccc-ccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLIL-HTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSI 80 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~-~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~ 80 (449)
.||||.|++.|+.++++.|++.+++.. ....+..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..
T Consensus 10 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~ 88 (282)
T 1oy3_D 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRV 88 (282)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTT
T ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 467777777777777777777655421 1222234777777777777777777777777776 66677777777777777
Q ss_pred CcHHHHHHHHHcCcccc------------cccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHh
Q 042799 81 GHTEVVRELLKVDRKLC------------QLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKS 148 (449)
Q Consensus 81 g~~~iv~~Ll~~~~~~~------------~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 148 (449)
|+.+++++|++++++.. ......+.++++.++..+.......++......++..|..|+||||+|+..
T Consensus 89 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 168 (282)
T 1oy3_D 89 RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH 168 (282)
T ss_dssp TCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHT
T ss_pred CCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHc
Confidence 77777777777665421 112234556666666555544444444333334777889999999999999
Q ss_pred CCHhHHHHHHHHHHhhccccccccccCC-CCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCC
Q 042799 149 SQYGVIAIIVDWIREMKKEHIFNMRDEQ-GNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGL 227 (449)
Q Consensus 149 ~~~~~v~~Ll~~~~~~~~~~~~n~~d~~-G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~ 227 (449)
|+.+++++|+++ +.+++.+|.. |+|||| +|+..++ .+++++|+++|+ +++.+|..|.
T Consensus 169 g~~~~v~~Ll~~------g~~~~~~~~~~g~tpL~---~A~~~~~-------~~~v~~Ll~~ga------d~~~~d~~g~ 226 (282)
T 1oy3_D 169 KDAEMVRLLRDA------GADLNKPEPTCGRTPLH---LAVEAQA-------ASVLELLLKAGA------DPTARMYGGR 226 (282)
T ss_dssp TCHHHHHHHHHH------TCCTTCCCTTTCCCHHH---HHHHTTC-------HHHHHHHHHTTC------CTTCCCTTSC
T ss_pred CCHHHHHHHHHc------CCCCCCCCCCCCcCHHH---HHHHcCC-------HHHHHHHHHcCC------CCcccccCCC
Confidence 999999999998 7788888855 999999 9999999 999999999998 8999999999
Q ss_pred ChHHHHhhCCCCcChhHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCC
Q 042799 228 TAIDLLLIFPSEAGDREIEEILRSAGATGMGDDNQTSTGNPPASSAET 275 (449)
Q Consensus 228 T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 275 (449)
||||+| ...++.+++++|+++|++++.++..|.+|...+...+.
T Consensus 227 tpL~~A----~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 227 TPLGSA----LLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp CHHHHH----HTSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred CHHHHH----HHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence 999999 68899999999999999999999999999998875543
No 14
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.2e-38 Score=315.54 Aligned_cols=239 Identities=23% Similarity=0.324 Sum_probs=222.3
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
.||||.|++.|+.++|++|++++.+++. .+..|.||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..|
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASPNV--SNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCC--SSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHT
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCC
Confidence 5899999999999999999999887643 2345999999999999999999999999997 889999999999999999
Q ss_pred cHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHH
Q 042799 82 HTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWI 161 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~ 161 (449)
+.+++++|+++|+++ +..|..|.||||+|+..|+.++++.|++.+.+ ....+..|.||||+|+..|+.+++++|+++
T Consensus 92 ~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~- 168 (437)
T 1n11_A 92 HTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLER- 168 (437)
T ss_dssp CHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-
T ss_pred CHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHhC-
Confidence 999999999999998 88999999999999999999999999999877 777889999999999999999999999987
Q ss_pred HhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcC
Q 042799 162 REMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAG 241 (449)
Q Consensus 162 ~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~ 241 (449)
+.+++..|..|.|||| .|+..++ .+++++|+++|+ +++..+..|.||||+| +..+
T Consensus 169 -----g~~~~~~~~~g~t~L~---~A~~~~~-------~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A----~~~~ 223 (437)
T 1n11_A 169 -----DAHPNAAGKNGLTPLH---VAVHHNN-------LDIVKLLLPRGG------SPHSPAWNGYTPLHIA----AKQN 223 (437)
T ss_dssp -----TCCTTCCCSSCCCHHH---HHHHTTC-------HHHHHHHGGGTC------CSCCCCTTCCCHHHHH----HHTT
T ss_pred -----CCCCCCCCCCCCCHHH---HHHHcCC-------HHHHHHHHhCCC------CCCCcCCCCCCHHHHH----HHcC
Confidence 7788999999999999 9999999 999999999998 8888899999999999 6788
Q ss_pred hhHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 042799 242 DREIEEILRSAGATGMGDDNQTSTGNPPAS 271 (449)
Q Consensus 242 ~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~ 271 (449)
+.+++++|+++|++.+..+..|.+|.+.+.
T Consensus 224 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 253 (437)
T 1n11_A 224 QVEVARSLLQYGGSANAESVQGVTPLHLAA 253 (437)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 999999999999999999988988888776
No 15
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=7.3e-38 Score=286.40 Aligned_cols=219 Identities=21% Similarity=0.235 Sum_probs=201.2
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
.||||.|++.|+.+++++|++.+.++... +..|.||||+|+..|+.+++++|+++|.++ +..|..|.||||+|+..|
T Consensus 12 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 88 (237)
T 3b7b_A 12 RSPLHAAAEAGHVDICHMLVQAGANIDTC--SEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKG 88 (237)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHHHTT
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCCcCcc--CCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcC
Confidence 58999999999999999999998876443 345999999999999999999999999987 888999999999999999
Q ss_pred cHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHH
Q 042799 82 HTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWI 161 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~ 161 (449)
+.+++++|+++++...+..|..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.
T Consensus 89 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~- 166 (237)
T 3b7b_A 89 HYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAA- 166 (237)
T ss_dssp CHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHHHHHHTT-
T ss_pred CHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHHHHHHHc-
Confidence 999999999999444488999999999999999999999999999887 888999999999999999999999999987
Q ss_pred HhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcC
Q 042799 162 REMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAG 241 (449)
Q Consensus 162 ~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~ 241 (449)
+.+++.+|..|+|||| +|+..++ .+++++|+++|+ +++.+|..|.||+|+| ...+
T Consensus 167 -----g~~~~~~~~~g~t~L~---~A~~~~~-------~~~v~~Ll~~ga------d~~~~d~~g~t~l~~A----~~~~ 221 (237)
T 3b7b_A 167 -----KCDLHAVNIHGDSPLH---IAARENR-------YDCVVLFLSRDS------DVTLKNKEGETPLQCA----SLNS 221 (237)
T ss_dssp -----TCCTTCCCTTCCCHHH---HHHHTTC-------HHHHHHHHTTTC------CTTCCCTTSCCHHHHS----CTTC
T ss_pred -----CCCCCCcCCCCCCHHH---HHHHhCC-------HhHHHHHHHcCC------CCCccCCCCCCHHHHH----HHHH
Confidence 7889999999999999 9999999 999999999998 8999999999999999 7778
Q ss_pred hhHHHHHHH
Q 042799 242 DREIEEILR 250 (449)
Q Consensus 242 ~~~i~~~Ll 250 (449)
+.+.+..|+
T Consensus 222 ~~~~~~~l~ 230 (237)
T 3b7b_A 222 QVWSALQMS 230 (237)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 775554444
No 16
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=4.8e-38 Score=303.41 Aligned_cols=231 Identities=24% Similarity=0.270 Sum_probs=196.3
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCc-------------------
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDM------------------- 62 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~------------------- 62 (449)
+|+||.||+.|++++|+.||+.|++++... +..|.||||+|+..|+.++|++|+++|+++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~-~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 104 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGS 104 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhccc
Confidence 489999999999999999999999875433 234999999999999999999999998754
Q ss_pred -------------ccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccc---------cccCCCCCcHhHHHHHhCcHHHH
Q 042799 63 -------------AQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLC---------QLQGPEAKTPLHCAAIKGRSHAV 120 (449)
Q Consensus 63 -------------~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~---------~~~d~~g~tpLh~A~~~g~~~~v 120 (449)
.+..|..|+||||+|+..|+.+++++|+++|+++. ...+..|.||||+|++.|+.+++
T Consensus 105 ~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v 184 (337)
T 4g8k_A 105 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 184 (337)
T ss_dssp HHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHH
T ss_pred chhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHH
Confidence 24567788999999999999999999999987752 12355788999999999999999
Q ss_pred HHHHhhCCCcccccccCCCcHHHHHHHhCC----HhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhh
Q 042799 121 AEMLSACPECVEDVTIQHYTALHLAIKSSQ----YGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKT 196 (449)
Q Consensus 121 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~ 196 (449)
++|+++.+.+++..|..|+|+||.++..+. .+++++|+++ ++++|.+|.+|+|||| .|+..++
T Consensus 185 ~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~------gad~n~~d~~g~t~L~---~a~~~~~---- 251 (337)
T 4g8k_A 185 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH------GADVNVRGERGKTPLI---LAVEKKH---- 251 (337)
T ss_dssp HHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT------TCCTTCCCGGGCCHHH---HHHHTTC----
T ss_pred HHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC------CCCCCCcCCCCCCHHH---HHHHhhh----
Confidence 999976555588899999999988876654 3477788776 7889999999999999 9999999
Q ss_pred hhHHHHHHHHhhC-ccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcCCCCCCC
Q 042799 197 WIHWQVIELLLGH-QANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGATGMGD 259 (449)
Q Consensus 197 ~~~~~iv~~Ll~~-ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~~ 259 (449)
.++++.|++. |+ ++|.+|.+|+||||+| +..++.+++++|+++||+++.+
T Consensus 252 ---~~~v~~Ll~~~~~------~vn~~d~~G~TpL~~A----~~~g~~~iv~~Ll~~GAd~n~~ 302 (337)
T 4g8k_A 252 ---LGLVQRLLEQEHI------EINDTDSDGKTALLLA----VELKLKKIAELLCKRGASTDCG 302 (337)
T ss_dssp ---HHHHHHHHTSTTC------CTTCBCTTSCBHHHHH----HHTTCHHHHHHHHTTSCSSTTC
T ss_pred ---hHHHHHHHHhcCC------cccCcCCCCCCHHHHH----HHcCCHHHHHHHHHCCCCCCCC
Confidence 9999999985 45 8999999999999999 6788999999999999998754
No 17
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=3.2e-38 Score=307.91 Aligned_cols=229 Identities=15% Similarity=0.131 Sum_probs=205.6
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
.||||.||+.|+.++|+.|++.+.+++. .+..|.||||+|+..|+.+++++|++++++. .+.+|.||||+|+..|
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A~~~g 95 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVSPTI--QNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMAN 95 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccc--cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHHHHcC
Confidence 4899999999999999999999887643 3345999999999999999999999999854 3458999999999999
Q ss_pred cHHHHHHHHHc----Ccccccc-----------------cCCCCCcHhHHHHHhC--cHHHHHHHHhhCCCcccccccCC
Q 042799 82 HTEVVRELLKV----DRKLCQL-----------------QGPEAKTPLHCAAIKG--RSHAVAEMLSACPECVEDVTIQH 138 (449)
Q Consensus 82 ~~~iv~~Ll~~----~~~~~~~-----------------~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g 138 (449)
+.+++++|+++ +.++ +. +|.+|.||||+|+..| +.+++++|++.+.+ ++..|..|
T Consensus 96 ~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~-~~~~d~~g 173 (364)
T 3ljn_A 96 KTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKAD 173 (364)
T ss_dssp CHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC-TTCCCTTS
T ss_pred CHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-CcccCCCC
Confidence 99999999998 6655 44 7889999999999999 99999999999877 89999999
Q ss_pred CcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCcc
Q 042799 139 YTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLE 218 (449)
Q Consensus 139 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~ 218 (449)
+||||+|+..|+.+++++|++++.+. .+.++|.+|..|+|||| +|+..++ .+++++|+++|+ +
T Consensus 174 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~~~~~g~t~L~---~A~~~g~-------~~~v~~Ll~~ga------d 236 (364)
T 3ljn_A 174 ETPLMRAMEFRNREALDLMMDTVPSK-SSLRLDYANKQGNSHLH---WAILINW-------EDVAMRFVEMGI------D 236 (364)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCSCS-SSCCTTCCCTTCCCTTH---HHHTTTC-------HHHHHHHHTTTC------C
T ss_pred CCHHHHHHHcCCHHHHHHHHhccccc-ccccccccCCCCCcHHH---HHHHcCC-------HHHHHHHHHcCC------C
Confidence 99999999999999999999983221 12339999999999999 9999999 999999999999 8
Q ss_pred ccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcCCCCCC
Q 042799 219 VNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGATGMG 258 (449)
Q Consensus 219 ~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~ 258 (449)
++..|..|.||||+| +..++.+++++|+++|++...
T Consensus 237 ~~~~d~~g~tpL~~A----~~~g~~~~v~~Ll~~~~~~~~ 272 (364)
T 3ljn_A 237 VNMEDNEHTVPLYLS----VRAAMVLLTKELLQKTDVFLI 272 (364)
T ss_dssp TTCCCTTSCCHHHHH----HHTCCHHHHHHHHHHSCHHHH
T ss_pred CCCCCCCCCCHHHHH----HHhChHHHHHHHHHcCCchhh
Confidence 999999999999999 678999999999999988644
No 18
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=4.2e-38 Score=295.39 Aligned_cols=207 Identities=17% Similarity=0.136 Sum_probs=154.2
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcc------------cccCCC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMA------------QEVNQD 69 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~------------~~~d~~ 69 (449)
.||||+|+..|+.++++.|++.++++... +..|.||||+|+..|+.+++++|++++++.. ......
T Consensus 46 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~--~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (282)
T 1oy3_D 46 QTALHLAAILGEASTVEKLYAAGAGVLVA--ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123 (282)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSSCC--CTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcch
Confidence 58999999999999999999999877533 3469999999999999999999999887531 122345
Q ss_pred CCcHHHHHHHcCcHHHHH-HHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCccccccc-CCCcHHHHHHH
Q 042799 70 GFSPMHMASSIGHTEVVR-ELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTI-QHYTALHLAIK 147 (449)
Q Consensus 70 g~tpLh~Aa~~g~~~iv~-~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~ 147 (449)
+.++++.++..+...... .+...+.++ +.+|..|.||||+|+..|+.+++++|++.+++ ++..+. .|+||||+|+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~ 201 (282)
T 1oy3_D 124 SHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVE 201 (282)
T ss_dssp --------------------CCCGGGGT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHH
T ss_pred hcchhhhccccccchhhhhhhhhhhhcC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHH
Confidence 678888887776554443 334445555 88899999999999999999999999999987 677764 59999999999
Q ss_pred hCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCC
Q 042799 148 SSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGL 227 (449)
Q Consensus 148 ~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~ 227 (449)
.|+.+++++|+++ +++++.+|..|+|||| +|+..++ .+++++|+++|+ +++.+|..|.
T Consensus 202 ~~~~~~v~~Ll~~------gad~~~~d~~g~tpL~---~A~~~~~-------~~~v~~Ll~~ga------~~~~~~~~g~ 259 (282)
T 1oy3_D 202 AQAASVLELLLKA------GADPTARMYGGRTPLG---SALLRPN-------PILARLLRAHGA------PEPEDGGDKL 259 (282)
T ss_dssp TTCHHHHHHHHHT------TCCTTCCCTTSCCHHH---HHHTSSC-------HHHHHHHHHTTC------CCCCCC----
T ss_pred cCCHHHHHHHHHc------CCCCcccccCCCCHHH---HHHHcCC-------cHHHHHHHHcCC------CcCcCCCccc
Confidence 9999999999997 7889999999999999 9999999 999999999999 9999999999
Q ss_pred ChHHHHh
Q 042799 228 TAIDLLL 234 (449)
Q Consensus 228 T~l~~A~ 234 (449)
||+++|.
T Consensus 260 tpl~~a~ 266 (282)
T 1oy3_D 260 SPCSSSG 266 (282)
T ss_dssp -------
T ss_pred ccccccC
Confidence 9999993
No 19
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4.6e-38 Score=284.97 Aligned_cols=220 Identities=17% Similarity=0.222 Sum_probs=200.6
Q ss_pred hCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 042799 11 AGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELL 90 (449)
Q Consensus 11 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll 90 (449)
.|+.+++++|++.++++.... +..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ----CCEETTEETTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHcCCCccccc-CCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 378889999999998876543 345999999999999999999999999987 888999999999999999999999999
Q ss_pred HcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhcccccc
Q 042799 91 KVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIF 170 (449)
Q Consensus 91 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 170 (449)
++++...+.++.+|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|+++ +.++
T Consensus 79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~ 151 (223)
T 2f8y_A 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKN------GANK 151 (223)
T ss_dssp HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT------TCCT
T ss_pred HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHc------CCCC
Confidence 999855588999999999999999999999999999887 889999999999999999999999999987 7889
Q ss_pred ccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHH
Q 042799 171 NMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILR 250 (449)
Q Consensus 171 n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll 250 (449)
+.+|..|+|||| +|+..++ .+++++|+++|+ +++.+|..|.||+++| ...++.+++++|+
T Consensus 152 ~~~~~~g~t~L~---~A~~~~~-------~~~v~~Ll~~ga------~~~~~~~~g~t~l~~A----~~~~~~~i~~~L~ 211 (223)
T 2f8y_A 152 DMQNNREETPLF---LAAREGS-------YETAKVLLDHFA------NRDITDHMDRLPRDIA----QERMHHDIVRLLD 211 (223)
T ss_dssp TCCCTTCCCHHH---HHHHHTC-------HHHHHHHHHTTC------CTTCCCTTCCCHHHHH----HHTTCHHHHHHHH
T ss_pred CCcCCCCcCHHH---HHHHcCC-------HHHHHHHHHcCC------CCccccccCCCHHHHH----HHhcchHHHHHHH
Confidence 999999999999 9999999 999999999998 8999999999999999 6789999999999
Q ss_pred HcCCCCCCC
Q 042799 251 SAGATGMGD 259 (449)
Q Consensus 251 ~~ga~~~~~ 259 (449)
++|+.....
T Consensus 212 ~~g~~~~~~ 220 (223)
T 2f8y_A 212 EYNLVRSPQ 220 (223)
T ss_dssp HTTCSSCC-
T ss_pred HcCCCcccc
Confidence 999986553
No 20
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1e-38 Score=295.54 Aligned_cols=224 Identities=17% Similarity=0.221 Sum_probs=178.8
Q ss_pred CCCCChHHHHHHHcC-------------CHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccc
Q 042799 33 LTSAGNPLHVASAYG-------------HIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQL 99 (449)
Q Consensus 33 ~~~g~t~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~ 99 (449)
+..|.||||+|+..| +.++++.|+++|+++....|..|+||||+|+..|+.+++++|+++|+++ +.
T Consensus 7 d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~ 85 (253)
T 1yyh_A 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NI 85 (253)
T ss_dssp ---------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TC
T ss_pred CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CC
Confidence 345999999999987 8999999999999987778999999999999999999999999999998 88
Q ss_pred cCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCC
Q 042799 100 QGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNT 179 (449)
Q Consensus 100 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T 179 (449)
+|..|.||||+|+..|+.+++++|++.++..++..|..|.||||+|+..|+.+++++|++. +.+++.+|.+|+|
T Consensus 86 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~d~~g~t 159 (253)
T 1yyh_A 86 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS------HADVNAVDDLGKS 159 (253)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT------TCCTTCBCTTSCB
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc------CCCCCCcCCCCCC
Confidence 9999999999999999999999999999866899999999999999999999999999997 7889999999999
Q ss_pred cccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcCCCCCCC
Q 042799 180 KIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGATGMGD 259 (449)
Q Consensus 180 ~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~~ 259 (449)
||| +|+..++ .+++++|+++|+ +++.+|..|.||||+| ...++.+++++|+++|++++.+
T Consensus 160 ~L~---~A~~~~~-------~~~v~~Ll~~ga------~~~~~~~~g~tpL~~A----~~~~~~~~v~~Ll~~ga~~~~~ 219 (253)
T 1yyh_A 160 ALH---WAAAVNN-------VDAAVVLLKNGA------NKDMQNNREETPLFLA----AREGSYETAKVLLDHFANRDIT 219 (253)
T ss_dssp HHH---HHHHHTC-------HHHHHHHHHTTC------CTTCCCTTSCCHHHHH----HHHTCHHHHHHHHHTTCCTTCC
T ss_pred HHH---HHHHcCC-------HHHHHHHHHcCC------CCCCcCCCCCCHHHHH----HHCCCHHHHHHHHHcCCCcccc
Confidence 999 9999999 999999999998 8999999999999999 6789999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCccccccchhhhhh
Q 042799 260 DNQTSTGNPPASSAETNPLQTKNDVTEYFK 289 (449)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (449)
+..|.+|.+.+. ..++.++.+++.
T Consensus 220 d~~g~tpl~~A~------~~g~~~i~~~l~ 243 (253)
T 1yyh_A 220 DHMDRLPRDIAQ------ERMHHDIVRLLD 243 (253)
T ss_dssp CTTCCCHHHHHH------HTTCHHHHHHHH
T ss_pred ccCCCCHHHHHH------HcCCHHHHHHHH
Confidence 999999998887 444555555554
No 21
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=282.83 Aligned_cols=227 Identities=23% Similarity=0.223 Sum_probs=205.9
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
.|+||.|++.|+.+.++.|++.+.++... +..|.||||+|+..|+.+++++|++++++.....+..|.||||+|+..|
T Consensus 10 ~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 10 TWDIVKATQYGIYERCRELVEAGYDVRQP--DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp GCCHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred chHHHHHHHcCChHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence 47999999999999999999998876433 3459999999999999999999999999886666777999999999999
Q ss_pred cHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCC-HhHHHHHHHH
Q 042799 82 HTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQ-YGVIAIIVDW 160 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~~v~~Ll~~ 160 (449)
+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..++ .+++++|++.
T Consensus 88 ~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~ 165 (240)
T 3eu9_A 88 HLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165 (240)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHT
T ss_pred CHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhCChHHHHHHHHhc
Confidence 999999999999998 88899999999999999999999999999887 88999999999999997776 7899999887
Q ss_pred HHhhccccccccccC-CCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCC
Q 042799 161 IREMKKEHIFNMRDE-QGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSE 239 (449)
Q Consensus 161 ~~~~~~~~~~n~~d~-~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~ 239 (449)
+.+++..+. .|+|||| .|+..++ .+++++|+++|+ +++..|..|.||+|+| ..
T Consensus 166 ------~~~~~~~~~~~g~t~L~---~A~~~~~-------~~~v~~Ll~~g~------~~~~~~~~g~t~l~~A----~~ 219 (240)
T 3eu9_A 166 ------NVSVNLGDKYHKNTALH---WAVLAGN-------TTVISLLLEAGA------NVDAQNIKGESALDLA----KQ 219 (240)
T ss_dssp ------TCCTTCCCTTTCCCHHH---HHHHHTC-------HHHHHHHHHHTC------CTTCBCTTSCBHHHHH----HH
T ss_pred ------CCCcchhhccCCCcHHH---HHHHcCC-------HHHHHHHHHcCC------CCCCcCCCCCCHHHHH----HH
Confidence 788888887 9999999 9999999 999999999998 8999999999999999 67
Q ss_pred cChhHHHHHHHHcCCCCCC
Q 042799 240 AGDREIEEILRSAGATGMG 258 (449)
Q Consensus 240 ~~~~~i~~~Ll~~ga~~~~ 258 (449)
.++.+++++|+++|++...
T Consensus 220 ~~~~~~v~~L~~~~~~~~~ 238 (240)
T 3eu9_A 220 RKNVWMINHLQEARQAKGY 238 (240)
T ss_dssp TTCHHHHHHHHHHC-----
T ss_pred cCcHHHHHHHHHhhhccCc
Confidence 8999999999999988654
No 22
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=4.1e-37 Score=281.40 Aligned_cols=213 Identities=20% Similarity=0.259 Sum_probs=201.7
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHH
Q 042799 31 SALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHC 110 (449)
Q Consensus 31 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~ 110 (449)
..+..|.||||+|+..|+.+++++|+++|.++ +..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+
T Consensus 6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 83 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHL 83 (237)
T ss_dssp CSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHH
T ss_pred cccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHH
Confidence 34456999999999999999999999999987 888999999999999999999999999999988 8899999999999
Q ss_pred HHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcc
Q 042799 111 AAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNY 190 (449)
Q Consensus 111 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~ 190 (449)
|+..|+.+++++|++.++..++..|..|+||||+|+..|+.+++++|++. +.+++.+|..|+|||| .|+..
T Consensus 84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~------g~~~~~~~~~g~t~L~---~A~~~ 154 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK------GSDINIRDNEENICLH---WAAFS 154 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHH---HHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC------CCCCCccCCCCCCHHH---HHHHC
Confidence 99999999999999999766899999999999999999999999999997 7788999999999999 99999
Q ss_pred cchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcCCCCCCCCCCCCCCCCCC
Q 042799 191 KEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGATGMGDDNQTSTGNPPA 270 (449)
Q Consensus 191 ~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~ 270 (449)
++ .+++++|+++|+ +++.+|..|.||||+| ...++.+++++|+++|++++.++..|.||.+.+
T Consensus 155 ~~-------~~~~~~Ll~~g~------~~~~~~~~g~t~L~~A----~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A 217 (237)
T 3b7b_A 155 GC-------VDIAEILLAAKC------DLHAVNIHGDSPLHIA----ARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217 (237)
T ss_dssp CC-------HHHHHHHHTTTC------CTTCCCTTCCCHHHHH----HHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHS
T ss_pred CC-------HHHHHHHHHcCC------CCCCcCCCCCCHHHHH----HHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence 99 999999999998 8999999999999999 678899999999999999999999999999888
Q ss_pred C
Q 042799 271 S 271 (449)
Q Consensus 271 ~ 271 (449)
.
T Consensus 218 ~ 218 (237)
T 3b7b_A 218 S 218 (237)
T ss_dssp C
T ss_pred H
Confidence 6
No 23
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=8e-38 Score=306.15 Aligned_cols=225 Identities=18% Similarity=0.181 Sum_probs=198.1
Q ss_pred CHHHHHHHHhCCHHHHHHHH--------hcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcH
Q 042799 2 DRKLFEATQAGNVQSLHQLL--------GENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSP 73 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll--------~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp 73 (449)
.||||+|+..|+.++++.|+ +.+.+++.. +..|.||||+|+..|+.+++++|+++|+++ +..|..|.||
T Consensus 126 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~ 202 (373)
T 2fo1_E 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM--DCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSA 202 (373)
T ss_dssp CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCH
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC--CCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCH
Confidence 48999999999998887776 667666433 345999999999999999999999999997 8889999999
Q ss_pred HHHHHHcCcHHHHHHHHHcC---cccccccCCCCCcHhHHHHHhC---cHHHHHHHHhhCCCcccc--------cccCCC
Q 042799 74 MHMASSIGHTEVVRELLKVD---RKLCQLQGPEAKTPLHCAAIKG---RSHAVAEMLSACPECVED--------VTIQHY 139 (449)
Q Consensus 74 Lh~Aa~~g~~~iv~~Ll~~~---~~~~~~~d~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~--------~d~~g~ 139 (449)
||+|+..|+.+++++|++++ .++ +..|.+|.||||+|+..+ +.+++++|++.+.+ ++. .|..|+
T Consensus 203 L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~ 280 (373)
T 2fo1_E 203 LHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGR 280 (373)
T ss_dssp HHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCC
T ss_pred HHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCC-cccccccccCcccccCC
Confidence 99999999999999999987 565 788999999999999998 89999999999876 443 567899
Q ss_pred cHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccc
Q 042799 140 TALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEV 219 (449)
Q Consensus 140 t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~ 219 (449)
||||+|+..|+.+++++|++. .+.++|.+|.+|+|||| +|+..++ .+++++|+++|+ ++
T Consensus 281 t~Lh~A~~~g~~~~v~~Ll~~-----~~~~~n~~d~~g~TpL~---~A~~~g~-------~~iv~~Ll~~ga------d~ 339 (373)
T 2fo1_E 281 TALHYAAQVSNMPIVKYLVGE-----KGSNKDKQDEDGKTPIM---LAAQEGR-------IEVVMYLIQQGA------SV 339 (373)
T ss_dssp CTHHHHHSSCCHHHHHHHHHH-----SCCCTTCCCTTCCCHHH---HHHHHTC-------HHHHHHHHHTTC------CS
T ss_pred CHHHHHHHhCCHHHHHHHHHh-----cCCCccCcCCCCCCHHH---HHHHcCC-------HHHHHHHHHcCC------Cc
Confidence 999999999999999999987 24889999999999999 9999999 999999999998 89
Q ss_pred cccCCCCCChHHHHhhCCCCcChhHHHHHHHHcCCCC
Q 042799 220 NAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGATG 256 (449)
Q Consensus 220 ~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~ 256 (449)
+.+|..|.||||+| ...++.+++++|+++|++.
T Consensus 340 ~~~d~~g~t~l~~A----~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 340 EAVDATDHTARQLA----QANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp SCCCSSSCCHHHHH----HHTTCHHHHHHHHTTC---
T ss_pred cCCCCCCCCHHHHH----HHcCCHHHHHHHHhcCccc
Confidence 99999999999999 6789999999999998764
No 24
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.8e-37 Score=291.75 Aligned_cols=242 Identities=18% Similarity=0.174 Sum_probs=211.8
Q ss_pred HHHHhCCHHHHHHHHhcCcccccccc-------CCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 042799 7 EATQAGNVQSLHQLLGENPLILHTSA-------LTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASS 79 (449)
Q Consensus 7 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~-------~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~ 79 (449)
.+++.|..+.++.++........... +..|.||||.||..|+.+++++|+++|+++ +..|..|.||||+|+.
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 82 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACI 82 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHH
Confidence 57888888999999887654322111 113789999999999999999999999987 8899999999999999
Q ss_pred cCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHH
Q 042799 80 IGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVD 159 (449)
Q Consensus 80 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~ 159 (449)
.|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++++++ ++..|..|.||||+|+..++.++++.++.
T Consensus 83 ~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~ll~ 160 (299)
T 1s70_B 83 DDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVN 160 (299)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence 99999999999999998 88999999999999999999999999999887 88899999999999999999999998887
Q ss_pred HHHhh-c--------------------cccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCcc
Q 042799 160 WIREM-K--------------------KEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLE 218 (449)
Q Consensus 160 ~~~~~-~--------------------~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~ 218 (449)
..... . ........|..|.|||| +|+..++ .+++++|+++|+ +
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~---~A~~~g~-------~~~v~~Ll~~g~------d 224 (299)
T 1s70_B 161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALH---VAAAKGY-------TEVLKLLIQARY------D 224 (299)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHH---HHHHHTC-------HHHHHHHHTTTC------C
T ss_pred hcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHH---HHHHCCc-------HHHHHHHHHcCC------C
Confidence 52110 0 01122346788999999 9999999 999999999998 8
Q ss_pred ccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 042799 219 VNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGATGMGDDNQTSTGNPPAS 271 (449)
Q Consensus 219 ~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~ 271 (449)
+|.+|..|.||||+| +..++.+++++|+++|++++.++..|.||.+.+.
T Consensus 225 ~~~~d~~g~tpL~~A----~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~ 273 (299)
T 1s70_B 225 VNIKDYDGWTPLHAA----AHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273 (299)
T ss_dssp TTCCCTTCCCHHHHH----HHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred CCCcCCCCCcHHHHH----HhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 999999999999999 6788999999999999999999999999999986
No 25
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.5e-37 Score=292.95 Aligned_cols=219 Identities=20% Similarity=0.275 Sum_probs=194.9
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
+||||.|+..|+.+.++.|++.+.+++.. +..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|
T Consensus 41 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g 117 (299)
T 1s70_B 41 GAVFLAACSSGDTEEVLRLLERGADINYA--NVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCG 117 (299)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHCCCTTCB--CTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred ccHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcC
Confidence 48999999999999999999999876543 345999999999999999999999999998 888999999999999999
Q ss_pred cHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCccc--------------------------ccc
Q 042799 82 HTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVE--------------------------DVT 135 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~--------------------------~~d 135 (449)
+.+++++|+++|+++ +..|.+|.||||+|+..|+.++++.++...+..++ ..+
T Consensus 118 ~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 196 (299)
T 1s70_B 118 YLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA 196 (299)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred CHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhc
Confidence 999999999999998 88999999999999999999999988875443232 245
Q ss_pred cCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCcccccc
Q 042799 136 IQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQ 215 (449)
Q Consensus 136 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~ 215 (449)
..|.||||+|+..|+.+++++|++. +.++|.+|.+|+|||| +|+..++ .+++++|+++|+
T Consensus 197 ~~g~t~L~~A~~~g~~~~v~~Ll~~------g~d~~~~d~~g~tpL~---~A~~~~~-------~~~v~~Ll~~ga---- 256 (299)
T 1s70_B 197 KSGGTALHVAAAKGYTEVLKLLIQA------RYDVNIKDYDGWTPLH---AAAHWGK-------EEACRILVENLC---- 256 (299)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHTT------TCCTTCCCTTCCCHHH---HHHHTTC-------HHHHHHHHHTTC----
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHc------CCCCCCcCCCCCcHHH---HHHhcCC-------HHHHHHHHHcCC----
Confidence 7899999999999999999999987 7889999999999999 9999999 999999999998
Q ss_pred CccccccCCCCCChHHHHhhCCCCcChhHHHHHHHH
Q 042799 216 GLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRS 251 (449)
Q Consensus 216 ~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~ 251 (449)
+++.+|..|+||+|+| .+.. .+.++.+++
T Consensus 257 --d~~~~d~~g~t~l~~A----~~~~-~~~l~~l~~ 285 (299)
T 1s70_B 257 --DMEAVNKVGQTAFDVA----DEDI-LGYLEELQK 285 (299)
T ss_dssp --CTTCCCTTSCCTTTSC----CSGG-GHHHHHHHH
T ss_pred --CCCCcCCCCCCHHHHH----HHHH-HHHHHHHHH
Confidence 8999999999999999 4544 444444443
No 26
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=7.1e-37 Score=278.01 Aligned_cols=209 Identities=23% Similarity=0.296 Sum_probs=195.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcC--cccccccCCCCCcHhHHHHH
Q 042799 36 AGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVD--RKLCQLQGPEAKTPLHCAAI 113 (449)
Q Consensus 36 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~--~~~~~~~d~~g~tpLh~A~~ 113 (449)
|+||||.|+..|+.++++.|++.+++.....|..|+||||+|+..|+.+++++|++++ .++....|..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 7899999999999999999999999887778999999999999999999999999999 55533388999999999999
Q ss_pred hCcHHHHHHHHhhC--CCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhccc
Q 042799 114 KGRSHAVAEMLSAC--PECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYK 191 (449)
Q Consensus 114 ~g~~~~v~~Ll~~~--~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~ 191 (449)
.|+.+++++|++.+ ++ ++..|..|.||||+|+..|+.+++++|+++ +.+++.+|..|+|||| +|+..+
T Consensus 82 ~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~------g~~~~~~~~~g~t~L~---~A~~~~ 151 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIEN------GASVRIKDKFNQIPLH---RAASVG 151 (228)
T ss_dssp HCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT------TCCSCCCCTTSCCHHH---HHHHTT
T ss_pred cCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHc------CCCccccCCCCCCHHH---HHHHcC
Confidence 99999999999997 44 888899999999999999999999999987 7889999999999999 999999
Q ss_pred chhhhhhHHHHHHHHhhCc-cccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHH-HcCCCCCCCCCCCCCCCCC
Q 042799 192 EQLKTWIHWQVIELLLGHQ-ANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILR-SAGATGMGDDNQTSTGNPP 269 (449)
Q Consensus 192 ~~~~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll-~~ga~~~~~~~~~~~~~~~ 269 (449)
+ .+++++|+++| + +++.+|..|.||||+| ...++.+++++|+ ++|++++.++..|.||.+.
T Consensus 152 ~-------~~~v~~Ll~~g~~------~~~~~d~~g~t~L~~A----~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~ 214 (228)
T 2dzn_A 152 S-------LKLIELLCGLGKS------AVNWQDKQGWTPLFHA----LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214 (228)
T ss_dssp C-------HHHHHHHHTTTCC------CSCCCCTTSCCHHHHH----HHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGG
T ss_pred C-------HHHHHHHHhcCcc------cccCcCCCCCCHHHHH----HHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHH
Confidence 9 99999999999 6 8999999999999999 6788999999999 9999999999999999998
Q ss_pred CC
Q 042799 270 AS 271 (449)
Q Consensus 270 ~~ 271 (449)
+.
T Consensus 215 A~ 216 (228)
T 2dzn_A 215 AL 216 (228)
T ss_dssp CS
T ss_pred HH
Confidence 86
No 27
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1e-36 Score=279.25 Aligned_cols=211 Identities=21% Similarity=0.256 Sum_probs=197.4
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHh----hCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHh
Q 042799 33 LTSAGNPLHVASAYGHIDFVKEIIN----LRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPL 108 (449)
Q Consensus 33 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL 108 (449)
+..|+||||+|+..|+.+++++|++ .+.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.|||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l 83 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAA 83 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHH
Confidence 3559999999999999999999997 56665 888999999999999999999999999999988 88899999999
Q ss_pred HHHHHhCcHHHHHHHHhhCCC---cccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhcccccccccc-CCCCCcccch
Q 042799 109 HCAAIKGRSHAVAEMLSACPE---CVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRD-EQGNTKIQSY 184 (449)
Q Consensus 109 h~A~~~g~~~~v~~Ll~~~~~---~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d-~~G~T~Lh~~ 184 (449)
|+|+..|+.+++++|++.++. .++..|..|+||||+|+..|+.+++++|++. +.+++..| ..|.||||
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~------g~~~~~~~~~~g~t~L~-- 155 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER------GADIDAVDIKSGRSPLI-- 155 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT------TCCTTCCCTTTCCCHHH--
T ss_pred HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc------CCCcccccccCCCcHHH--
Confidence 999999999999999999872 4788899999999999999999999999997 77888888 88999999
Q ss_pred hhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcCCCCCCCCCCCC
Q 042799 185 DLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGATGMGDDNQTS 264 (449)
Q Consensus 185 ~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~ 264 (449)
.|+..++ .+++++|+++|+ +++..|..|.||||+| ...++.+++++|+++|++++.++..|.
T Consensus 156 -~A~~~~~-------~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A----~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 217 (241)
T 1k1a_A 156 -HAVENNS-------LSMVQLLLQHGA------NVNAQMYSGSSALHSA----SGRGLLPLVRTLVRSGADSSLKNCHND 217 (241)
T ss_dssp -HHHHTTC-------HHHHHHHHHTTC------CTTCBCTTSCBHHHHH----HHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred -HHHHcCC-------HHHHHHHHHcCC------CCCCcCCCCCCHHHHH----HHcCCHHHHHHHHhcCCCCCCcCCCCC
Confidence 9999999 999999999998 8999999999999999 678899999999999999999999999
Q ss_pred CCCCCCC
Q 042799 265 TGNPPAS 271 (449)
Q Consensus 265 ~~~~~~~ 271 (449)
||.+.+.
T Consensus 218 tpl~~A~ 224 (241)
T 1k1a_A 218 TPLMVAR 224 (241)
T ss_dssp CTTTTCS
T ss_pred CHHHHHH
Confidence 9999987
No 28
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=7.4e-37 Score=284.34 Aligned_cols=206 Identities=19% Similarity=0.243 Sum_probs=192.9
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHh
Q 042799 35 SAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIK 114 (449)
Q Consensus 35 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 114 (449)
+|+||||.|+..|+.+++++|+++|.++ +..|.+|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVS 79 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHc
Confidence 3899999999999999999999999987 889999999999999999999999999999998 88999999999999999
Q ss_pred CcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchh
Q 042799 115 GRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQL 194 (449)
Q Consensus 115 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~ 194 (449)
|+.+++++|++.+++ ++ .+.+|.||||+|+..|+.+++++|+++ +.+++.+|.+|+|||| .|+..++
T Consensus 80 ~~~~~v~~Ll~~g~~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~---~A~~~~~-- 146 (261)
T 2xai_A 80 GSWDCVNLLLQHGAS-VQ-PESDLASPIHEAARRGHVECVNSLIAY------GGNIDHKISHLGTPLY---LACENQQ-- 146 (261)
T ss_dssp TCHHHHHHHHHTTCC-SS-CSCTTCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCBTTTBCHHH---HHHHTTC--
T ss_pred CCHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcCcHHHHHHHHHc------CCCCCcCCCCCCCHHH---HHHHhCC--
Confidence 999999999999887 44 356699999999999999999999997 7889999999999999 9999999
Q ss_pred hhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 042799 195 KTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGATGMGDDNQTSTGNPPAS 271 (449)
Q Consensus 195 ~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~ 271 (449)
.+++++|+++|+ ++|. |..|.||||+| +..++.+++++|+++|++++.++..|.||.+.+.
T Consensus 147 -----~~~v~~Ll~~g~------~~~~-~~~g~t~Lh~A----~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~ 207 (261)
T 2xai_A 147 -----RACVKKLLESGA------DVNQ-GKGQDSPLHAV----ARTASEELACLLMDFGADTQAKNAEGKRPVELVP 207 (261)
T ss_dssp -----HHHHHHHHHHTC------CTTC-CBTTBCHHHHH----HHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC
T ss_pred -----HHHHHHHHHcCC------CCCC-CCCCCChHHHH----HHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhcc
Confidence 999999999998 7775 88999999999 6788999999999999999999999999999887
No 29
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4e-38 Score=308.26 Aligned_cols=244 Identities=17% Similarity=0.202 Sum_probs=211.4
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHH--------hhCCCcccccCCCCCcH
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEII--------NLRPDMAQEVNQDGFSP 73 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll--------~~~~~~~~~~d~~g~tp 73 (449)
.||||.|+..|+ ++++.|++.+.+. .+...|.||||+|+..|+.+++++|+ +.|.++ +..|..|+||
T Consensus 95 ~t~L~~Aa~~~~-~~~~~L~~~~~n~---~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g~Tp 169 (373)
T 2fo1_E 95 PIKLHTEAAGSY-AITEPITRESVNI---IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTP 169 (373)
T ss_dssp CCHHHHHHHSSS-CCCSCCSTTTTTT---CCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCH
T ss_pred ccHHHHHhcCCc-hHHHHhccccccc---cCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCCCCCCCH
Confidence 589999999654 7888877643322 22245999999999999998877776 788887 8899999999
Q ss_pred HHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCC--CcccccccCCCcHHHHHHHhC--
Q 042799 74 MHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACP--ECVEDVTIQHYTALHLAIKSS-- 149 (449)
Q Consensus 74 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~--~~~~~~d~~g~t~Lh~A~~~~-- 149 (449)
||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+. ..++..|..|.||||+|+..+
T Consensus 170 L~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~ 248 (373)
T 2fo1_E 170 LMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR 248 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCST
T ss_pred HHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCc
Confidence 99999999999999999999998 8899999999999999999999999999872 237888999999999999998
Q ss_pred -CHhHHHHHHHHHHhhcc--ccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCc-cccccCccccccCCC
Q 042799 150 -QYGVIAIIVDWIREMKK--EHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQ-ANASQGLEVNAINHS 225 (449)
Q Consensus 150 -~~~~v~~Ll~~~~~~~~--~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~n~~ 225 (449)
+.+++++|++.+.+.+. ....+..|..|+|||| +|+..++ .+++++|+++| + +++.+|..
T Consensus 249 ~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh---~A~~~g~-------~~~v~~Ll~~~~~------~~n~~d~~ 312 (373)
T 2fo1_E 249 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH---YAAQVSN-------MPIVKYLVGEKGS------NKDKQDED 312 (373)
T ss_dssp THHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHH---HHHSSCC-------HHHHHHHHHHSCC------CTTCCCTT
T ss_pred chHHHHHHHHHCCCCcccccccccCcccccCCCHHH---HHHHhCC-------HHHHHHHHHhcCC------CccCcCCC
Confidence 89999999998433221 0112347889999999 9999999 99999999886 6 89999999
Q ss_pred CCChHHHHhhCCCCcChhHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 042799 226 GLTAIDLLLIFPSEAGDREIEEILRSAGATGMGDDNQTSTGNPPAS 271 (449)
Q Consensus 226 g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~ 271 (449)
|.||||+| +..++.+++++|+++|++++..+..|.|+.+.+.
T Consensus 313 g~TpL~~A----~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~ 354 (373)
T 2fo1_E 313 GKTPIMLA----AQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQ 354 (373)
T ss_dssp CCCHHHHH----HHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHH
T ss_pred CCCHHHHH----HHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHH
Confidence 99999999 6789999999999999999999999999988876
No 30
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=6.7e-37 Score=288.39 Aligned_cols=217 Identities=19% Similarity=0.246 Sum_probs=194.6
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
.||||.|++.|+.++++.|++.+.+++.. +|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|
T Consensus 32 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g 106 (285)
T 3kea_A 32 HSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSG 106 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHcC
Confidence 58999999999999999999998876543 3999999999999999999999999997 888999999999999999
Q ss_pred cHHHHHHHHHcCcccccccCCCC-CcHhHHHHHhCcHHHHHHHHhhCCCccccccc-CCCcHHHHHHHhCCHhHHHHHHH
Q 042799 82 HTEVVRELLKVDRKLCQLQGPEA-KTPLHCAAIKGRSHAVAEMLSACPECVEDVTI-QHYTALHLAIKSSQYGVIAIIVD 159 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~v~~Ll~ 159 (449)
+.+++++|+++|+++ +.+|..| .||||+|+..|+.+++++|++++++. .+. .|+||||+|+..|+.+++++|++
T Consensus 107 ~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 107 NMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp CHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCccHHHHHHHcChHHHHHHHHH
Confidence 999999999999998 8889988 79999999999999999999998763 233 89999999999999999999999
Q ss_pred HHHhhccccccccccCCCCCc-ccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCC
Q 042799 160 WIREMKKEHIFNMRDEQGNTK-IQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPS 238 (449)
Q Consensus 160 ~~~~~~~~~~~n~~d~~G~T~-Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~ 238 (449)
+ ++++|.+|..|+|| || +|+..++ .+++++|+++|+ +++..|. .+ .
T Consensus 183 ~------gad~n~~~~~g~t~~L~---~A~~~~~-------~~~v~~Ll~~ga------d~~~~~~-------~a----~ 229 (285)
T 3kea_A 183 Y------MTSTNTNNSLLFIPDIK---LAIDNKD-------IEMLQALFKYDI------NIYSANL-------EN----V 229 (285)
T ss_dssp H------HHHTCTTCCCBCCTTHH---HHHHHTC-------HHHHHHHTTSCB------CSTTTTG-------GG----G
T ss_pred c------CCCCCcccCCCCChHHH---HHHHcCC-------HHHHHHHHHcCC------CCCCCCh-------hh----h
Confidence 8 66788999999998 99 9999999 999999999998 8888773 23 4
Q ss_pred CcChhHHHHHHHHcCCCCCCCC
Q 042799 239 EAGDREIEEILRSAGATGMGDD 260 (449)
Q Consensus 239 ~~~~~~i~~~Ll~~ga~~~~~~ 260 (449)
..++.+++++|+++|++.....
T Consensus 230 ~~~~~~iv~~Ll~~g~~~~~~~ 251 (285)
T 3kea_A 230 LLDDAEIAKMIIEKHVEYKSDS 251 (285)
T ss_dssp TTTCHHHHHHHHHHHHHHTTCT
T ss_pred hcCCHHHHHHHHHcCCCCCCcc
Confidence 5789999999999999876654
No 31
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=6.4e-36 Score=289.23 Aligned_cols=220 Identities=23% Similarity=0.304 Sum_probs=198.8
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
.||||.|+..|+.++++.|++.+.++... +..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|
T Consensus 59 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 135 (351)
T 3utm_A 59 STPLHLAAGYNRVRIVQLLLQHGADVHAK--DKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKN 135 (351)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcC
Confidence 58999999999999999999999876443 345999999999999999999999999998 888999999999999999
Q ss_pred cHHHHHHHHHcCcccccc------------------------------------------------------cCCCCCcH
Q 042799 82 HTEVVRELLKVDRKLCQL------------------------------------------------------QGPEAKTP 107 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~------------------------------------------------------~d~~g~tp 107 (449)
+.+++++|+++|+++ +. .+..|.||
T Consensus 136 ~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~ 214 (351)
T 3utm_A 136 RVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETA 214 (351)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCH
T ss_pred CHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCH
Confidence 999999999998875 32 34677899
Q ss_pred hHHHHHh---CcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccch
Q 042799 108 LHCAAIK---GRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSY 184 (449)
Q Consensus 108 Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~ 184 (449)
||+|+.. +..+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|+++ +.++|.+|..|+||||
T Consensus 215 L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~------ga~~n~~d~~g~t~L~-- 285 (351)
T 3utm_A 215 LHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKH------GAKMNALDSLGQTALH-- 285 (351)
T ss_dssp HHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHH--
T ss_pred HHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHC------CCCCCCcCCCCCCHHH--
Confidence 9999999 568999999999887 889999999999999999999999999987 7889999999999999
Q ss_pred hhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcCCCC
Q 042799 185 DLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGATG 256 (449)
Q Consensus 185 ~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~ 256 (449)
+|+..++ .+++++|+++|+ +++.+|..|.||+++| ..+++++|.+.+...
T Consensus 286 -~A~~~~~-------~~~v~~Ll~~ga------d~~~~~~~g~tal~~a--------~~~~~~~l~~~~~~~ 335 (351)
T 3utm_A 286 -RAALAGH-------LQTCRLLLSYGS------DPSIISLQGFTAAQMG--------NEAVQQILSESTPMR 335 (351)
T ss_dssp -HHHHHTC-------HHHHHHHHHTTC------CTTCCCTTSCCHHHHS--------CHHHHHHHHHC----
T ss_pred -HHHHcCc-------HHHHHHHHHcCC------CCCCcCCCCCChhhhh--------hHHHHHHHHhccccc
Confidence 9999999 999999999999 9999999999999998 578889998876554
No 32
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.8e-36 Score=273.21 Aligned_cols=209 Identities=22% Similarity=0.265 Sum_probs=198.7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHh
Q 042799 35 SAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIK 114 (449)
Q Consensus 35 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 114 (449)
.+.||||.|+..|+.+.++.|++.++...+..|..|.||||+|+..|+.+++++|+++|.++ +.+|..|.||||+|+..
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA 83 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHH
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHc
Confidence 37899999999999999999999998877889999999999999999999999999999988 88999999999999999
Q ss_pred CcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchh
Q 042799 115 GRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQL 194 (449)
Q Consensus 115 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~ 194 (449)
|+.+++++|++++.+ ++..|..|.||||+|+..|+.+++++|++. +.+++.+|..|.|||| .|+..++
T Consensus 84 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~------g~~~~~~~~~g~t~L~---~A~~~~~-- 151 (231)
T 3aji_A 84 GXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEG------GANPDAKDHYDATAMH---RAAAKGN-- 151 (231)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHH---HHHHHTC--
T ss_pred CHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCCCCcCCCCCcHHH---HHHHcCC--
Confidence 999999999999887 888999999999999999999999999987 7788999999999999 9999999
Q ss_pred hhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 042799 195 KTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGATGMGDDNQTSTGNPPAS 271 (449)
Q Consensus 195 ~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~ 271 (449)
.+++++|+++|+ +++.+|..|.||||+| ...++.+++++|+++|++++.++..|.||.+.+.
T Consensus 152 -----~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A----~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 213 (231)
T 3aji_A 152 -----LKMVHILLFYKA------STNIQDTEGNTPLHLA----CDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213 (231)
T ss_dssp -----HHHHHHHHHTTC------CSCCCCTTSCCHHHHH----HHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSC
T ss_pred -----HHHHHHHHhcCC------CccccCCCCCCHHHHH----HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 999999999998 8999999999999999 6788999999999999999999999999988775
No 33
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.1e-35 Score=286.89 Aligned_cols=226 Identities=18% Similarity=0.183 Sum_probs=195.8
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCcccccc-------------------------------ccCCCCChHHHHHHHcCCHH
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHT-------------------------------SALTSAGNPLHVASAYGHID 50 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~-------------------------------~~~~~g~t~Lh~Aa~~g~~~ 50 (449)
.||||+|++.|+.++|+.|++.|+++... ..+..|.||||+|+..|+.+
T Consensus 60 ~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~ 139 (337)
T 4g8k_A 60 WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 139 (337)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHH
T ss_pred cCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHH
Confidence 48999999999999999999988754321 12345999999999999999
Q ss_pred HHHHHHhhCCCcc---------cccCCCCCcHHHHHHHcCcHHHHHHHHHc-CcccccccCCCCCcHhHHHHHhCc----
Q 042799 51 FVKEIINLRPDMA---------QEVNQDGFSPMHMASSIGHTEVVRELLKV-DRKLCQLQGPEAKTPLHCAAIKGR---- 116 (449)
Q Consensus 51 ~v~~Ll~~~~~~~---------~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~---- 116 (449)
++++|+++|+++. ...+..|.||||+|+..|+.+++++||++ |+++ +.+|..|.||||.++..++
T Consensus 140 ~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~ 218 (337)
T 4g8k_A 140 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDV 218 (337)
T ss_dssp HHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTH
T ss_pred HHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccH
Confidence 9999999988752 23456799999999999999999999964 7887 8999999999999887654
Q ss_pred HHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhh
Q 042799 117 SHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKT 196 (449)
Q Consensus 117 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~ 196 (449)
.+++++|++++.+ ++.+|.+|+||||+|+..|+.++++.|++. .+.++|.+|.+|+|||| +|++.++
T Consensus 219 ~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~-----~~~~vn~~d~~G~TpL~---~A~~~g~---- 285 (337)
T 4g8k_A 219 EAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQ-----EHIEINDTDSDGKTALL---LAVELKL---- 285 (337)
T ss_dssp HHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTS-----TTCCTTCBCTTSCBHHH---HHHHTTC----
T ss_pred HHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHh-----cCCcccCcCCCCCCHHH---HHHHcCC----
Confidence 4678899999887 899999999999999999999999999875 47889999999999999 9999999
Q ss_pred hhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcCCCCCCC
Q 042799 197 WIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGATGMGD 259 (449)
Q Consensus 197 ~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~~ 259 (449)
.+++++|+++|+ ++|. .+|||+| ...++.+++++|+++||+++..
T Consensus 286 ---~~iv~~Ll~~GA------d~n~-----~~~L~~A----~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 286 ---KKIAELLCKRGA------STDC-----GDLVMTA----RRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp ---HHHHHHHHTTSC------SSTT-----CCHHHHH----HHTTCHHHHHHHHHTTCCC---
T ss_pred ---HHHHHHHHHCCC------CCCC-----CCHHHHH----HHcCCHHHHHHHHHCcCCCCCC
Confidence 999999999999 6654 4699999 6788999999999999998763
No 34
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=3.8e-36 Score=275.05 Aligned_cols=209 Identities=20% Similarity=0.280 Sum_probs=179.3
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhhCCC---cccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHH
Q 042799 34 TSAGNPLHVASAYGHIDFVKEIINLRPD---MAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHC 110 (449)
Q Consensus 34 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~ 110 (449)
..|.||||+|+..|+.+++++|++.++. ..+..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus 6 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 84 (236)
T 1ikn_D 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHL 84 (236)
T ss_dssp -CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHH
T ss_pred CCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHH
Confidence 4599999999999999999999988763 24788899999999999999999999999999888 8889999999999
Q ss_pred HHHhCcHHHHHHHHhhCCC-----cccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccC-CCCCcccch
Q 042799 111 AAIKGRSHAVAEMLSACPE-----CVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDE-QGNTKIQSY 184 (449)
Q Consensus 111 A~~~g~~~~v~~Ll~~~~~-----~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~-~G~T~Lh~~ 184 (449)
|+..|+.+++++|++.+++ ..+..|..|.||||+|+..|+.+++++|+++ +.+++.+|. .|+||||
T Consensus 85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~~g~tpL~-- 156 (236)
T 1ikn_D 85 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL------GADVNAQEPCNGRTALH-- 156 (236)
T ss_dssp HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH------TCCTTCCCTTTCCCHHH--
T ss_pred HHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCCCCCCCCCCCCHHH--
Confidence 9999999999999998753 2567788899999999999999999999987 778889987 9999999
Q ss_pred hhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcCCCCC--CCCCC
Q 042799 185 DLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGATGM--GDDNQ 262 (449)
Q Consensus 185 ~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~--~~~~~ 262 (449)
+|+..++ .+++++|+++|+ +++.+|..|.||+|+| ...++.+++++|+++|++.. ..+..
T Consensus 157 -~A~~~~~-------~~~v~~Ll~~ga------~~~~~~~~g~tpl~~A----~~~~~~~~~~~Ll~~ga~~~~~~~~~~ 218 (236)
T 1ikn_D 157 -LAVDLQN-------PDLVSLLLKCGA------DVNRVTYQGYSPYQLT----WGRPSTRIQQQLGQLTLENLQMLPESE 218 (236)
T ss_dssp -HHHHTTC-------HHHHHHHHTTTC------CSCCCCTTCCCGGGGC----TTSSCHHHHHHHHTTSCGGGSSCCCCC
T ss_pred -HHHHcCC-------HHHHHHHHHcCC------CCCcccCCCCCHHHHH----HccCchHHHHHHHHcchhhhhcCCccc
Confidence 9999999 999999999998 8999999999999999 78899999999999999876 44444
Q ss_pred CCCCCCC
Q 042799 263 TSTGNPP 269 (449)
Q Consensus 263 ~~~~~~~ 269 (449)
+.++...
T Consensus 219 ~~~~~~~ 225 (236)
T 1ikn_D 219 DEESYDT 225 (236)
T ss_dssp TTTCCCC
T ss_pred hHHHHhh
Confidence 5444443
No 35
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-36 Score=278.97 Aligned_cols=209 Identities=20% Similarity=0.261 Sum_probs=169.6
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhhCCCc-------ccccCCCCCcHHHHHHHcCcH-HHHHHHHHcCcccccccCCCCCc
Q 042799 35 SAGNPLHVASAYGHIDFVKEIINLRPDM-------AQEVNQDGFSPMHMASSIGHT-EVVRELLKVDRKLCQLQGPEAKT 106 (449)
Q Consensus 35 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~-------~~~~d~~g~tpLh~Aa~~g~~-~iv~~Ll~~~~~~~~~~d~~g~t 106 (449)
.+.+||+.||..|+.++|++|++.+++. .+..|..|.||||+|+..++. +++++|++.|+++ +.+|.+|+|
T Consensus 10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~T 88 (269)
T 4b93_B 10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDGSS 88 (269)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTTSCC
T ss_pred cchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCCCC
Confidence 3789999999999999999999988753 355678899999999998876 5899999999998 899999999
Q ss_pred HhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhh
Q 042799 107 PLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDL 186 (449)
Q Consensus 107 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~ 186 (449)
|||+|+..|+.+++++|++.+++ ++..+.+|.||+|+|+..++.+++++|++. +.++|.+|..|+|||| +
T Consensus 89 pLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~------g~~~n~~d~~g~TpL~---~ 158 (269)
T 4b93_B 89 PLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDS------NAKPNKKDLSGNTPLI---Y 158 (269)
T ss_dssp HHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT------TCCSCCCCTTCCCHHH---H
T ss_pred HHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHC------CCCCCCCCCCCCCHHH---H
Confidence 99999999999999999999887 889999999999999999999999999987 7889999999999999 9
Q ss_pred hhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcCCCCCCCCCCCCCC
Q 042799 187 SSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGATGMGDDNQTSTG 266 (449)
Q Consensus 187 A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~ 266 (449)
|+..++ .+++++|+++|+ ++|..|..|.||||+| +..++.+++++|+++|++++.++..|.||
T Consensus 159 A~~~g~-------~~~v~~Ll~~ga------dvn~~~~~g~t~Lh~A----~~~g~~~~v~~Ll~~Gad~~~~d~~G~Tp 221 (269)
T 4b93_B 159 ACSGGH-------HELVALLLQHGA------SINASNNKGNTALHEA----VIEKHVFVVELLLLHGASVQVLNKRQRTA 221 (269)
T ss_dssp HHHTTC-------GGGHHHHHHTTC------CTTCBCTTSCBHHHHH----HHTTCHHHHHHHHHTTCCSCCCCTTSCCS
T ss_pred HHHCCC-------HHHHHHHHHCCC------CCCccccCCCcHHHHH----HHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 999999 999999999998 9999999999999999 67899999999999999999999999999
Q ss_pred CCCCC
Q 042799 267 NPPAS 271 (449)
Q Consensus 267 ~~~~~ 271 (449)
.+.|.
T Consensus 222 L~~A~ 226 (269)
T 4b93_B 222 VDCAE 226 (269)
T ss_dssp GGGSC
T ss_pred HHHHH
Confidence 99886
No 36
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2.7e-35 Score=268.51 Aligned_cols=203 Identities=17% Similarity=0.179 Sum_probs=162.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHhh-CCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccc----cccCCCCCcHhHH
Q 042799 36 AGNPLHVASAYGHIDFVKEIINL-RPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLC----QLQGPEAKTPLHC 110 (449)
Q Consensus 36 g~t~Lh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~----~~~d~~g~tpLh~ 110 (449)
|+||||.|+..|+.++++.|++. +.++ +..|..|+||||+|+..|+.+++++|+++++++. +.+|.+|.||||+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 77888888888888888888877 5555 7777888888888888888888888888877653 3456678888888
Q ss_pred HHHhCcHHHHHHHHhhCCCcccccc-------------cCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCC
Q 042799 111 AAIKGRSHAVAEMLSACPECVEDVT-------------IQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQG 177 (449)
Q Consensus 111 A~~~g~~~~v~~Ll~~~~~~~~~~d-------------~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G 177 (449)
|+..|+.+++++|++++.+ ++..+ ..|+||||+|+..|+.+++++|+++ +.++|.+|.+|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~d~~g 154 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH------GADIRAQDSLG 154 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT------TCCTTCCCTTS
T ss_pred HHHcCCHHHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHC------CCCCCCCCCCC
Confidence 8888888888888887765 44444 3799999999999999999999987 78899999999
Q ss_pred CCcccchhhhhcccchhhhhhHHHHH----HHHhhCccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcC
Q 042799 178 NTKIQSYDLSSNYKEQLKTWIHWQVI----ELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAG 253 (449)
Q Consensus 178 ~T~Lh~~~~A~~~~~~~~~~~~~~iv----~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~g 253 (449)
+|||| +|+..++ .+++ ++|+++|++.......+.+|..|.||||+| ...++.+++++|+++|
T Consensus 155 ~t~L~---~A~~~~~-------~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A----~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 155 NTVLH---ILILQPN-------KTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA----GVEGNIVMFQHLMQKR 220 (232)
T ss_dssp CCHHH---HHHTCSC-------HHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHH----HHHTCHHHHHHHHHHH
T ss_pred CCHHH---HHHHcCC-------hHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHH----HHcCCHHHHHHHHhcC
Confidence 99999 9999999 8777 999999982111111168999999999999 7789999999999999
Q ss_pred CCCCCCC
Q 042799 254 ATGMGDD 260 (449)
Q Consensus 254 a~~~~~~ 260 (449)
+......
T Consensus 221 ~~~~~~~ 227 (232)
T 2rfa_A 221 KHIAAAH 227 (232)
T ss_dssp HHC----
T ss_pred ccchhhh
Confidence 8766543
No 37
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.2e-35 Score=289.58 Aligned_cols=212 Identities=17% Similarity=0.221 Sum_probs=194.4
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHH
Q 042799 34 TSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAI 113 (449)
Q Consensus 34 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 113 (449)
..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++. .+.+|.||||+|+.
T Consensus 18 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A~~ 93 (364)
T 3ljn_A 18 DENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVM 93 (364)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHHHH
Confidence 44999999999999999999999999997 889999999999999999999999999999854 44589999999999
Q ss_pred hCcHHHHHHHHhh----CCCcccc-----------------cccCCCcHHHHHHHhC--CHhHHHHHHHHHHhhcccccc
Q 042799 114 KGRSHAVAEMLSA----CPECVED-----------------VTIQHYTALHLAIKSS--QYGVIAIIVDWIREMKKEHIF 170 (449)
Q Consensus 114 ~g~~~~v~~Ll~~----~~~~~~~-----------------~d~~g~t~Lh~A~~~~--~~~~v~~Ll~~~~~~~~~~~~ 170 (449)
.|+.+++++|++. +.+ ++. .|..|.||||+|+..| +.+++++|++. +.++
T Consensus 94 ~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~------ga~~ 166 (364)
T 3ljn_A 94 ANKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL------GASP 166 (364)
T ss_dssp TTCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH------TCCT
T ss_pred cCCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc------CCCC
Confidence 9999999999998 554 444 8889999999999999 99999999998 7889
Q ss_pred ccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHH
Q 042799 171 NMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILR 250 (449)
Q Consensus 171 n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll 250 (449)
+.+|..|.|||| +|+..++ .+++++|+++|++ ...+++|..|..|.||||+| +..++.+++++|+
T Consensus 167 ~~~d~~g~t~L~---~A~~~g~-------~~~v~~Ll~~g~~-~~~~~~~~~~~~g~t~L~~A----~~~g~~~~v~~Ll 231 (364)
T 3ljn_A 167 TAKDKADETPLM---RAMEFRN-------REALDLMMDTVPS-KSSLRLDYANKQGNSHLHWA----ILINWEDVAMRFV 231 (364)
T ss_dssp TCCCTTSCCHHH---HHHHTTC-------HHHHHHHHHHCSC-SSSCCTTCCCTTCCCTTHHH----HTTTCHHHHHHHH
T ss_pred cccCCCCCCHHH---HHHHcCC-------HHHHHHHHhcccc-cccccccccCCCCCcHHHHH----HHcCCHHHHHHHH
Confidence 999999999999 9999999 9999999999982 12233999999999999999 7889999999999
Q ss_pred HcCCCCCCCCCCCCCCCCCCC
Q 042799 251 SAGATGMGDDNQTSTGNPPAS 271 (449)
Q Consensus 251 ~~ga~~~~~~~~~~~~~~~~~ 271 (449)
++|++++.++..|.||.+.+.
T Consensus 232 ~~gad~~~~d~~g~tpL~~A~ 252 (364)
T 3ljn_A 232 EMGIDVNMEDNEHTVPLYLSV 252 (364)
T ss_dssp TTTCCTTCCCTTSCCHHHHHH
T ss_pred HcCCCCCCCCCCCCCHHHHHH
Confidence 999999999999999988876
No 38
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.6e-35 Score=278.92 Aligned_cols=216 Identities=15% Similarity=0.067 Sum_probs=191.4
Q ss_pred HHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHH
Q 042799 9 TQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRE 88 (449)
Q Consensus 9 a~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~ 88 (449)
++..+.+.+..||..+ ++ ...+..|.||||+|+..|+.+++++|+++|+++ +.. +|+||||+|+..|+.+++++
T Consensus 7 i~~~~~~~v~~lL~~~-~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~ 80 (285)
T 3kea_A 7 INTWKSKQLKSFLSSK-DT--FKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKI 80 (285)
T ss_dssp GGGCCHHHHHHHHHST-TT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHH
T ss_pred HHhcCHHHHHHHHHhC-CC--CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHH
Confidence 4566666666666654 22 233456999999999999999999999999887 554 49999999999999999999
Q ss_pred HHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCC-CcHHHHHHHhCCHhHHHHHHHHHHhhccc
Q 042799 89 LLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQH-YTALHLAIKSSQYGVIAIIVDWIREMKKE 167 (449)
Q Consensus 89 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g-~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~ 167 (449)
|+++|+++ +.+|..|.||||+|+..|+.+++++|++++++ ++..|..| .||||+|+..|+.+++++|+++ +
T Consensus 81 Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~------g 152 (285)
T 3kea_A 81 LLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE------I 152 (285)
T ss_dssp HHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT------S
T ss_pred HHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhC------C
Confidence 99999998 88999999999999999999999999999877 88999999 8999999999999999999987 3
Q ss_pred cccccccC-CCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCCh-HHHHhhCCCCcChhHH
Q 042799 168 HIFNMRDE-QGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTA-IDLLLIFPSEAGDREI 245 (449)
Q Consensus 168 ~~~n~~d~-~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~-l~~A~~~~~~~~~~~i 245 (449)
... .|. .|+|||| .|+..++ .+++++|+++|+ +++.+|..|.|| ||+| ...++.++
T Consensus 153 ~~~--~~~~~g~t~L~---~A~~~g~-------~~~v~~Ll~~ga------d~n~~~~~g~t~~L~~A----~~~~~~~~ 210 (285)
T 3kea_A 153 PST--FDLAILLSCIH---ITIKNGH-------VDMMILLLDYMT------STNTNNSLLFIPDIKLA----IDNKDIEM 210 (285)
T ss_dssp CTT--CCCSTHHHHHH---HHHHTTC-------HHHHHHHHHHHH------HTCTTCCCBCCTTHHHH----HHHTCHHH
T ss_pred Ccc--ccccCCccHHH---HHHHcCh-------HHHHHHHHHcCC------CCCcccCCCCChHHHHH----HHcCCHHH
Confidence 322 333 8999999 9999999 999999999999 999999999998 9999 67889999
Q ss_pred HHHHHHcCCCCCCCC
Q 042799 246 EEILRSAGATGMGDD 260 (449)
Q Consensus 246 ~~~Ll~~ga~~~~~~ 260 (449)
+++|+++|++++..+
T Consensus 211 v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 211 LQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHTTSCBCSTTTT
T ss_pred HHHHHHcCCCCCCCC
Confidence 999999999998876
No 39
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.5e-35 Score=271.05 Aligned_cols=210 Identities=18% Similarity=0.110 Sum_probs=185.2
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccc--cccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLI--LHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASS 79 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~--~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~ 79 (449)
+||||.|+..|+.++++.|++.+... .....+..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+.
T Consensus 9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 87 (236)
T 1ikn_D 9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACE 87 (236)
T ss_dssp CCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHH
T ss_pred CchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence 58999999999999999999987642 12223345999999999999999999999999997 8899999999999999
Q ss_pred cCcHHHHHHHHHcCccc-----ccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCccccccc-CCCcHHHHHHHhCCHhH
Q 042799 80 IGHTEVVRELLKVDRKL-----CQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTI-QHYTALHLAIKSSQYGV 153 (449)
Q Consensus 80 ~g~~~iv~~Ll~~~~~~-----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~ 153 (449)
.|+.+++++|++++++. .+..|..|.||||+|+..|+.+++++|++.+.+ ++..+. .|+||||+|+..|+.++
T Consensus 88 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~ 166 (236)
T 1ikn_D 88 QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDL 166 (236)
T ss_dssp HTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHH
Confidence 99999999999998642 367889999999999999999999999999987 788887 99999999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHH
Q 042799 154 IAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLL 233 (449)
Q Consensus 154 v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A 233 (449)
+++|+++ +++++.+|..|+|||| +|+..++ .+++++|+++|++ ......+.+|.||.+.+
T Consensus 167 v~~Ll~~------ga~~~~~~~~g~tpl~---~A~~~~~-------~~~~~~Ll~~ga~----~~~~~~~~~~~~~~~~~ 226 (236)
T 1ikn_D 167 VSLLLKC------GADVNRVTYQGYSPYQ---LTWGRPS-------TRIQQQLGQLTLE----NLQMLPESEDEESYDTE 226 (236)
T ss_dssp HHHHHTT------TCCSCCCCTTCCCGGG---GCTTSSC-------HHHHHHHHTTSCG----GGSSCCCCCTTTCCCCC
T ss_pred HHHHHHc------CCCCCcccCCCCCHHH---HHHccCc-------hHHHHHHHHcchh----hhhcCCccchHHHHhhh
Confidence 9999987 7889999999999999 9999999 9999999999992 12347889999998766
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.4e-34 Score=263.75 Aligned_cols=196 Identities=17% Similarity=0.245 Sum_probs=172.1
Q ss_pred CHHHHHHHHhCCHHHHHHHHhc-CccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcc----cccCCCCCcHHHH
Q 042799 2 DRKLFEATQAGNVQSLHQLLGE-NPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMA----QEVNQDGFSPMHM 76 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~----~~~d~~g~tpLh~ 76 (449)
+||||.|++.|+.+.++.|++. +.++.. .+..|.||||+|+..|+.+++++|+++++++. +..|..|+||||+
T Consensus 4 ~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQ--RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp TCHHHHHHHTTCHHHHHHHHTTTCSCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHhcCCCccc--CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 6999999999999999999998 665533 23559999999999999999999999998753 4567799999999
Q ss_pred HHHcCcHHHHHHHHHcCcccccccCC-------------CCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHH
Q 042799 77 ASSIGHTEVVRELLKVDRKLCQLQGP-------------EAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALH 143 (449)
Q Consensus 77 Aa~~g~~~iv~~Ll~~~~~~~~~~d~-------------~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh 143 (449)
|+..|+.+++++|+++|+++ +.++. +|.||||+|+..|+.+++++|++++.+ ++.+|..|+||||
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~ 159 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLH 159 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred HHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHH
Confidence 99999999999999999987 55554 799999999999999999999999887 8999999999999
Q ss_pred HHHHhCCHhHH----HHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCcc
Q 042799 144 LAIKSSQYGVI----AIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQA 211 (449)
Q Consensus 144 ~A~~~~~~~~v----~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga 211 (449)
+|+..|+.+++ ++|++.+.+.......+.+|..|+|||| +|+..++ .+++++|+++|+
T Consensus 160 ~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~---~A~~~g~-------~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 160 ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFK---LAGVEGN-------IVMFQHLMQKRK 221 (232)
T ss_dssp HHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHH---HHHHHTC-------HHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHH---HHHHcCC-------HHHHHHHHhcCc
Confidence 99999999988 8888774332222223789999999999 9999999 999999999997
No 41
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=3.6e-34 Score=255.03 Aligned_cols=198 Identities=21% Similarity=0.266 Sum_probs=163.7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHh
Q 042799 35 SAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIK 114 (449)
Q Consensus 35 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 114 (449)
.+.||||.|+..|+.+.++.|++.++...+..|.+|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 37888999999999988888888887444788888889999999999999999999888887 77888888999999999
Q ss_pred CcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchh
Q 042799 115 GRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQL 194 (449)
Q Consensus 115 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~ 194 (449)
|+.+++++|++.++..++..|..|.||||+|+..|+.+++++|++.+ ..+++.+|..|+|||| .|+..++..
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~~g~t~L~---~A~~~~~~~ 154 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG-----REDIDFQNDFGYTALI---EAVGLREGN 154 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC-----CCCTTCCCTTSCCHHH---HHHHSSCCS
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC-----CCCcCCCCCCCCCHHH---HHHHhccch
Confidence 99999998887776668888888889999999999999999888871 2778888888999998 887655311
Q ss_pred hhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcC
Q 042799 195 KTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAG 253 (449)
Q Consensus 195 ~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~g 253 (449)
.. +.+++++|+++|+ +++.+|..|.||+|+| ...++.+++++|+++|
T Consensus 155 ~~--~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~A----~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 155 QL--YQDIVKLLMENGA------DQSIKDNSGRTAMDYA----NQKGYTEISKILAQYN 201 (201)
T ss_dssp HH--HHHHHHHHHHTTC------CTTCCCTTSCCHHHHH----HHHTCHHHHHHHHTCC
T ss_pred hh--HHHHHHHHHHCCC------CCCccCCCCCCHHHHH----HHcCCHhHHHHHHhcC
Confidence 11 2788889998888 8888888899999988 6778888998888876
No 42
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=9.7e-34 Score=256.48 Aligned_cols=190 Identities=16% Similarity=0.192 Sum_probs=178.6
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
.||||.|++.|+.++++.|++.+.+... .+..|.||||+|+..|+.+++++|+++++...+..|..|.||||+|+..|
T Consensus 26 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 103 (223)
T 2f8y_A 26 ETALHLAARYSRSDAAKRLLEASADANI--QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103 (223)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHT
T ss_pred CchHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhC
Confidence 5899999999999999999999887643 33559999999999999999999999998555889999999999999999
Q ss_pred cHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHH
Q 042799 82 HTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWI 161 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~ 161 (449)
+.+++++|+++++++ +.+|.+|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+|++.|+.+++++|+++
T Consensus 104 ~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~- 180 (223)
T 2f8y_A 104 VEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDH- 180 (223)
T ss_dssp CHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-
T ss_pred cHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCcCHHHHHHHcCCHHHHHHHHHc-
Confidence 999999999999998 88999999999999999999999999999877 889999999999999999999999999997
Q ss_pred HhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCcc
Q 042799 162 REMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQA 211 (449)
Q Consensus 162 ~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga 211 (449)
+.+++.+|..|.|||| +|+..++ .+++++|+++|+
T Consensus 181 -----ga~~~~~~~~g~t~l~---~A~~~~~-------~~i~~~L~~~g~ 215 (223)
T 2f8y_A 181 -----FANRDITDHMDRLPRD---IAQERMH-------HDIVRLLDEYNL 215 (223)
T ss_dssp -----TCCTTCCCTTCCCHHH---HHHHTTC-------HHHHHHHHHTTC
T ss_pred -----CCCCccccccCCCHHH---HHHHhcc-------hHHHHHHHHcCC
Confidence 7788999999999999 9999999 999999999998
No 43
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.1e-33 Score=251.88 Aligned_cols=191 Identities=20% Similarity=0.228 Sum_probs=174.3
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
.||||.|+..|+.+.++.|++.++..... .+..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|
T Consensus 6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 6 VGALLEAANQRDTKKVKEILQDTTYQVDE-VDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp TTHHHHHHHTTCHHHHHHHHTCTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred ccHHHHHHHhccHHHHHHHHHcCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence 48999999999999999999988733222 2345999999999999999999999999998 889999999999999999
Q ss_pred cHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCC-----HhHHHH
Q 042799 82 HTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQ-----YGVIAI 156 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~~v~~ 156 (449)
+.+++++|++.+....+.+|..|.||||+|+..|+.+++++|++.++..++.+|..|+||||+|+..++ .+++++
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence 999999999655433388999999999999999999999999999966699999999999999999998 999999
Q ss_pred HHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCc
Q 042799 157 IVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQ 210 (449)
Q Consensus 157 Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~g 210 (449)
|+++ +.+++.+|.+|+|||| +|+..++ .+++++|+++|
T Consensus 164 Ll~~------ga~~~~~~~~g~t~l~---~A~~~~~-------~~~~~~Ll~~G 201 (201)
T 3hra_A 164 LMEN------GADQSIKDNSGRTAMD---YANQKGY-------TEISKILAQYN 201 (201)
T ss_dssp HHHT------TCCTTCCCTTSCCHHH---HHHHHTC-------HHHHHHHHTCC
T ss_pred HHHC------CCCCCccCCCCCCHHH---HHHHcCC-------HhHHHHHHhcC
Confidence 9997 7889999999999999 9999999 99999999876
No 44
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1.6e-34 Score=267.58 Aligned_cols=194 Identities=19% Similarity=0.184 Sum_probs=166.0
Q ss_pred CChHHHHHHHcCCHH----HHHHHHhhCCCcccc----cCCCCCcHHHHHHHc---CcHHHHHHHHHcCccccc------
Q 042799 36 AGNPLHVASAYGHID----FVKEIINLRPDMAQE----VNQDGFSPMHMASSI---GHTEVVRELLKVDRKLCQ------ 98 (449)
Q Consensus 36 g~t~Lh~Aa~~g~~~----~v~~Ll~~~~~~~~~----~d~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~------ 98 (449)
|+||||.|+..|+.+ ++++|++++.++ +. .|..|+||||+|+.. |+.+++++|+++|++...
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 788888888888886 556666778877 55 788888888888888 888888888888876521
Q ss_pred ----ccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccC-------------CCcHHHHHHHhCCHhHHHHHHH--
Q 042799 99 ----LQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQ-------------HYTALHLAIKSSQYGVIAIIVD-- 159 (449)
Q Consensus 99 ----~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-------------g~t~Lh~A~~~~~~~~v~~Ll~-- 159 (449)
.+|.+|.||||+|+..|+.+++++|++++++ ++..|.. |+||||+|+..|+.+++++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~ 159 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 2346788999999999999999999988776 6777665 9999999999999999999998
Q ss_pred -HHHhhccccccccccCCCCCcccchhhhhc--ccchhhhhhHHH-------HHHHHhhCccccccCccc-------ccc
Q 042799 160 -WIREMKKEHIFNMRDEQGNTKIQSYDLSSN--YKEQLKTWIHWQ-------VIELLLGHQANASQGLEV-------NAI 222 (449)
Q Consensus 160 -~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~--~~~~~~~~~~~~-------iv~~Ll~~ga~~~~~~~~-------~~~ 222 (449)
. +.++|.+|.+|+|||| +|+. .++ .+ ++++|+++|+ ++ +.+
T Consensus 160 ~~------ga~~n~~d~~g~TpLh---~A~~~~~~~-------~~~~~~~~~iv~~Ll~~ga------~~~~~~~~~~~~ 217 (256)
T 2etb_A 160 HQ------PASLEATDSLGNTVLH---ALVMIADNS-------PENSALVIHMYDGLLQMGA------RLCPTVQLEEIS 217 (256)
T ss_dssp SC------CCCTTCCCTTSCCHHH---HHHHHCCSC-------HHHHHHHHHHHHHHHHHHH------HHSTTCCGGGCC
T ss_pred cc------CCCcCccCCCCCCHHH---HHHHcccCC-------chhhHHHHHHHHHHHHcCC------Cccccccccccc
Confidence 6 8889999999999999 9998 666 66 9999999999 77 899
Q ss_pred CCCCCChHHHHhhCCCCcChhHHHHHHHHcCCCCC
Q 042799 223 NHSGLTAIDLLLIFPSEAGDREIEEILRSAGATGM 257 (449)
Q Consensus 223 n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~ 257 (449)
|..|.||||+| ...++.+++++|+++|++..
T Consensus 218 d~~g~tpL~~A----~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 218 NHQGLTPLKLA----AKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp CTTSCCHHHHH----HHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHH----HHhCCHHHHHHHHhCCCCCC
Confidence 99999999999 67899999999999987654
No 45
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=258.59 Aligned_cols=211 Identities=19% Similarity=0.240 Sum_probs=194.5
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHH
Q 042799 34 TSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAI 113 (449)
Q Consensus 34 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 113 (449)
..|.||||.|+..|+.+++++|++.|.++ +..|..|.||||+|+..|+.+++++|++++++.....+..|.||||+|+.
T Consensus 7 ~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~ 85 (240)
T 3eu9_A 7 DYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATR 85 (240)
T ss_dssp CGGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHH
T ss_pred cccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHH
Confidence 34899999999999999999999999987 88899999999999999999999999999998866777779999999999
Q ss_pred hCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccch
Q 042799 114 KGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQ 193 (449)
Q Consensus 114 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~ 193 (449)
.|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++. +.+++.+|..|.|||| .|+..++
T Consensus 86 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~------~~~~~~~~~~g~t~l~---~a~~~~~- 154 (240)
T 3eu9_A 86 QGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAK------GQDVDMMDQNGMTPLM---WAAYRTH- 154 (240)
T ss_dssp HTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHH---HHHHHCC-
T ss_pred cCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhc------CCCccccCCCCCcHHH---HHHHhCC-
Confidence 9999999999999877 888899999999999999999999999987 7789999999999999 9885543
Q ss_pred hhhhhHHHHHHHHhhCccccccCccccccCC-CCCChHHHHhhCCCCcChhHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 042799 194 LKTWIHWQVIELLLGHQANASQGLEVNAINH-SGLTAIDLLLIFPSEAGDREIEEILRSAGATGMGDDNQTSTGNPPAS 271 (449)
Q Consensus 194 ~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~-~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~ 271 (449)
..+++++|++.|+ +++..+. .|.||||+| +..++.+++++|+++|++++..+..|.+|.+.+.
T Consensus 155 -----~~~~~~~L~~~~~------~~~~~~~~~g~t~L~~A----~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 218 (240)
T 3eu9_A 155 -----SVDPTRLLLTFNV------SVNLGDKYHKNTALHWA----VLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218 (240)
T ss_dssp -----SSTTHHHHHHTTC------CTTCCCTTTCCCHHHHH----HHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHH
T ss_pred -----hHHHHHHHHhcCC------CcchhhccCCCcHHHHH----HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 1688999999998 8888887 899999999 6788999999999999999999999999888776
No 46
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=4.9e-33 Score=240.51 Aligned_cols=155 Identities=27% Similarity=0.398 Sum_probs=127.9
Q ss_pred hHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcH
Q 042799 38 NPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRS 117 (449)
Q Consensus 38 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~ 117 (449)
++|+.||+.|+.++|+.|+++|+++ +.+|.+|+||||+|+..++.+++++|+++|+++ +.+|.+|+||||+|++.|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence 4688888888888888888888887 778888888888888888888888888888887 77888888888888888888
Q ss_pred HHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhh
Q 042799 118 HAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTW 197 (449)
Q Consensus 118 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~ 197 (449)
+++++|++++++ ++.+|.+|+||||+|++.|+.+++++|+++ +++++.+|.+|+|||| +|+..++
T Consensus 84 ~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~------gad~~~~d~~G~TpL~---~A~~~g~----- 148 (169)
T 4gpm_A 84 EVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISK------GADVNTSDSDGRTPLD---LAREHGN----- 148 (169)
T ss_dssp HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHH---HHHHTTC-----
T ss_pred HHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCccccCCCCCCHHH---HHHHcCC-----
Confidence 888888888776 778888888888888888888888888876 6778888888888888 8888888
Q ss_pred hHHHHHHHHhhCcc
Q 042799 198 IHWQVIELLLGHQA 211 (449)
Q Consensus 198 ~~~~iv~~Ll~~ga 211 (449)
.+++++|+++||
T Consensus 149 --~~iv~~Ll~~GA 160 (169)
T 4gpm_A 149 --EEVVKLLEKQGG 160 (169)
T ss_dssp --HHHHHHHHTC--
T ss_pred --HHHHHHHHHCCC
Confidence 888888888888
No 47
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=5.1e-34 Score=266.83 Aligned_cols=212 Identities=16% Similarity=0.186 Sum_probs=168.8
Q ss_pred CHHHHHHHHhCCHHHHHHHHhc----Ccccccc--ccCCCCChHHHHHHHc---CCHHHHHHHHhhCCCc------cc--
Q 042799 2 DRKLFEATQAGNVQSLHQLLGE----NPLILHT--SALTSAGNPLHVASAY---GHIDFVKEIINLRPDM------AQ-- 64 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~----~~~~~~~--~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~------~~-- 64 (449)
.||||.|++.|+.+.|+.|++. +.++... ..+..|.||||+|+.. |+.+++++|+++|++. ++
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~ 93 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS 93 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCC
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcc
Confidence 5899999999999999999874 3333211 2244699999999987 9999999999997642 12
Q ss_pred --ccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCC--------------CCCcHhHHHHHhCcHHHHHHHHh---
Q 042799 65 --EVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGP--------------EAKTPLHCAAIKGRSHAVAEMLS--- 125 (449)
Q Consensus 65 --~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~--------------~g~tpLh~A~~~g~~~~v~~Ll~--- 125 (449)
..|..|+||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|++
T Consensus 94 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 172 (273)
T 2pnn_A 94 YTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW 172 (273)
T ss_dssp CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 25678999999999999999999999999998 76776 79999999999999999999999
Q ss_pred hCCCcccccccCCCcHHHHHHHhCC---------HhHHHHHHHHHHhhcc-ccccccccCCCCCcccchhhhhcccchhh
Q 042799 126 ACPECVEDVTIQHYTALHLAIKSSQ---------YGVIAIIVDWIREMKK-EHIFNMRDEQGNTKIQSYDLSSNYKEQLK 195 (449)
Q Consensus 126 ~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~v~~Ll~~~~~~~~-~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~ 195 (449)
.+.+ ++.+|.+|+||||+|+..|+ .+++++|++++.+++. ...++.+|.+|+|||| +|+..++
T Consensus 173 ~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~---~A~~~g~--- 245 (273)
T 2pnn_A 173 QPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLA---LAASSGK--- 245 (273)
T ss_dssp CCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH---HHHHTTC---
T ss_pred CCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHH---HHHHhCh---
Confidence 6666 89999999999999999998 7999999999554321 1112469999999999 9999999
Q ss_pred hhhHHHHHHHHhhCccccccCccccccCCCCCChH
Q 042799 196 TWIHWQVIELLLGHQANASQGLEVNAINHSGLTAI 230 (449)
Q Consensus 196 ~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l 230 (449)
.+++++|+++|+. |+......+.+|-
T Consensus 246 ----~~iv~~Ll~~ga~-----dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 246 ----IGVLAYILQREIH-----EPECRHAAAHHHH 271 (273)
T ss_dssp ----HHHHHHHHHHHTC------------------
T ss_pred ----HHHHHHHHHCCCC-----Cchhhhhhhhhcc
Confidence 9999999999983 5655555555553
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=4.6e-34 Score=267.13 Aligned_cols=211 Identities=16% Similarity=0.149 Sum_probs=172.7
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhh----CCCccc---ccCCCCCcHHHHHHHc---CcHHHHHHHHHcCcccc-----
Q 042799 33 LTSAGNPLHVASAYGHIDFVKEIINL----RPDMAQ---EVNQDGFSPMHMASSI---GHTEVVRELLKVDRKLC----- 97 (449)
Q Consensus 33 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~----~~~~~~---~~d~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~----- 97 (449)
+..|.||||.|+..|+.++++.|++. +.++.. ..|..|+||||+|+.. |+.+++++|+++|++..
T Consensus 10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~ 89 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF 89 (273)
T ss_dssp -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence 34599999999999999999998874 444311 4588999999999987 99999999999987531
Q ss_pred -c----ccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCccccccc--------------CCCcHHHHHHHhCCHhHHHHHH
Q 042799 98 -Q----LQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTI--------------QHYTALHLAIKSSQYGVIAIIV 158 (449)
Q Consensus 98 -~----~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~--------------~g~t~Lh~A~~~~~~~~v~~Ll 158 (449)
+ .+|..|.||||+|+..|+.+++++|++++++ ++..+. .|+||||+|+..|+.+++++|+
T Consensus 90 i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 168 (273)
T 2pnn_A 90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL 168 (273)
T ss_dssp HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHH
T ss_pred hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 2 2567999999999999999999999999887 777776 7999999999999999999999
Q ss_pred H---HHHhhccccccccccCCCCCcccchhhhhcccchhh--hhhHHHHHHHHhhCccccccCcccc-------ccCCCC
Q 042799 159 D---WIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLK--TWIHWQVIELLLGHQANASQGLEVN-------AINHSG 226 (449)
Q Consensus 159 ~---~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~--~~~~~~iv~~Ll~~ga~~~~~~~~~-------~~n~~g 226 (449)
+ . +.++|.+|.+|+|||| +|+..++... .-...+++++|+++|+ ++| .+|..|
T Consensus 169 ~~~~~------gad~~~~d~~g~tpLh---~A~~~~~~~~~~~~~~~~~v~~Ll~~ga------~~n~~~~~~~~~d~~g 233 (273)
T 2pnn_A 169 QNSWQ------PADISARDSVGNTVLH---ALVEVADNTVDNTKFVTSMYNEILILGA------KLHPTLKLEEITNRKG 233 (273)
T ss_dssp HCSSC------CCCTTCCCTTSCCHHH---HHHHHCCSCHHHHHHHHHHHHHHHHHHH------HHCTTCCGGGCCCTTS
T ss_pred hcccC------CCCceeeCCCCCcHHH---HHHHccCcchhHHHHHHHHHHHHHHhhh------hcccccccccccCCCC
Confidence 8 6 7889999999999999 9998665211 1111589999999998 665 589999
Q ss_pred CChHHHHhhCCCCcChhHHHHHHHHcCC-CCCCCCCCC
Q 042799 227 LTAIDLLLIFPSEAGDREIEEILRSAGA-TGMGDDNQT 263 (449)
Q Consensus 227 ~T~l~~A~~~~~~~~~~~i~~~Ll~~ga-~~~~~~~~~ 263 (449)
.||||+| ...++.+++++|+++|+ ++......+
T Consensus 234 ~TpL~~A----~~~g~~~iv~~Ll~~ga~dp~~~~~~~ 267 (273)
T 2pnn_A 234 LTPLALA----ASSGKIGVLAYILQREIHEPECRHAAA 267 (273)
T ss_dssp CCHHHHH----HHTTCHHHHHHHHHHHTC---------
T ss_pred CCHHHHH----HHhChHHHHHHHHHCCCCCchhhhhhh
Confidence 9999999 67899999999999999 666654433
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=3.5e-33 Score=258.58 Aligned_cols=198 Identities=16% Similarity=0.177 Sum_probs=169.2
Q ss_pred CHHHHHHHHhCCHH----HHHHHHhcCcccccc--ccCCCCChHHHHHHHc---CCHHHHHHHHhhCCCccc--------
Q 042799 2 DRKLFEATQAGNVQ----SLHQLLGENPLILHT--SALTSAGNPLHVASAY---GHIDFVKEIINLRPDMAQ-------- 64 (449)
Q Consensus 2 dt~L~~Aa~~g~~~----~v~~Ll~~~~~~~~~--~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~-------- 64 (449)
.||||.|++.|+.+ ++++|++.+.+++.. ..+..|.||||+|+.. |+.+++++|++.|++...
T Consensus 3 ~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 82 (256)
T 2etb_A 3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ 82 (256)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCC
T ss_pred ccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccc
Confidence 58999999999997 556666788776540 1234599999999999 999999999999876521
Q ss_pred --ccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCC-------------CCcHhHHHHHhCcHHHHHHHHh---h
Q 042799 65 --EVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPE-------------AKTPLHCAAIKGRSHAVAEMLS---A 126 (449)
Q Consensus 65 --~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~-------------g~tpLh~A~~~g~~~~v~~Ll~---~ 126 (449)
..|..|.||||+|+..|+.+++++|+++|+++ +.+|.. |.||||+|+..|+.+++++|++ .
T Consensus 83 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 83 CTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred cccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 23478999999999999999999999999998 777776 9999999999999999999999 6
Q ss_pred CCCcccccccCCCcHHHHHHH--hCCHh-------HHHHHHHHHHhhccccc-cccccCCCCCcccchhhhhcccchhhh
Q 042799 127 CPECVEDVTIQHYTALHLAIK--SSQYG-------VIAIIVDWIREMKKEHI-FNMRDEQGNTKIQSYDLSSNYKEQLKT 196 (449)
Q Consensus 127 ~~~~~~~~d~~g~t~Lh~A~~--~~~~~-------~v~~Ll~~~~~~~~~~~-~n~~d~~G~T~Lh~~~~A~~~~~~~~~ 196 (449)
+.+ ++.+|.+|+||||+|+. .++.+ ++++|+++|.++..... .+.+|..|+|||| +|+..++
T Consensus 162 ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~---~A~~~g~---- 233 (256)
T 2etb_A 162 PAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK---LAAKEGK---- 233 (256)
T ss_dssp CCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHH---HHHHTTC----
T ss_pred CCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHH---HHHHhCC----
Confidence 666 89999999999999999 78888 99999999544321111 1899999999999 9999999
Q ss_pred hhHHHHHHHHhhCcc
Q 042799 197 WIHWQVIELLLGHQA 211 (449)
Q Consensus 197 ~~~~~iv~~Ll~~ga 211 (449)
.+++++|+++|+
T Consensus 234 ---~~~v~~Ll~~g~ 245 (256)
T 2etb_A 234 ---IEIFRHILQREF 245 (256)
T ss_dssp ---HHHHHHHHHHHH
T ss_pred ---HHHHHHHHhCCC
Confidence 999999999987
No 50
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.98 E-value=2.4e-32 Score=236.21 Aligned_cols=159 Identities=24% Similarity=0.374 Sum_probs=147.7
Q ss_pred cHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCH
Q 042799 72 SPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQY 151 (449)
Q Consensus 72 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~ 151 (449)
++|+.||+.|+.++|+.|+++|+++ +.+|.+|.||||+|+..++.++++.|++.+.+ ++.+|.+|+||||+|+.+|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHHcCCH
Confidence 4799999999999999999999998 89999999999999999999999999999887 899999999999999999999
Q ss_pred hHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHH
Q 042799 152 GVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAID 231 (449)
Q Consensus 152 ~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~ 231 (449)
+++++|+++ ++++|.+|.+|+|||| +|+..++ .+++++|+++|+ +++.+|.+|+||||
T Consensus 84 ~~v~~Ll~~------gadvn~~d~~G~TpLh---~A~~~g~-------~~~v~~Ll~~ga------d~~~~d~~G~TpL~ 141 (169)
T 4gpm_A 84 EVVKLLISK------GADVNAKDSDGRTPLH---HAAENGH-------KEVVKLLISKGA------DVNTSDSDGRTPLD 141 (169)
T ss_dssp HHHHHHHHT------TCCTTCCCTTSCCHHH---HHHHTTC-------HHHHHHHHHTTC------CTTCCCTTSCCHHH
T ss_pred HHHHHHHHC------cCCCCCCCCCCCCHHH---HHHHcCC-------HHHHHHHHHcCC------CccccCCCCCCHHH
Confidence 999999997 7889999999999999 9999999 999999999999 99999999999999
Q ss_pred HHhhCCCCcChhHHHHHHHHcCCCCCC
Q 042799 232 LLLIFPSEAGDREIEEILRSAGATGMG 258 (449)
Q Consensus 232 ~A~~~~~~~~~~~i~~~Ll~~ga~~~~ 258 (449)
+| ...++.+++++|+++||++..
T Consensus 142 ~A----~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 142 LA----REHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp HH----HHTTCHHHHHHHHTC------
T ss_pred HH----HHcCCHHHHHHHHHCCCCcCC
Confidence 99 678899999999999999764
No 51
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=1.1e-32 Score=255.78 Aligned_cols=198 Identities=14% Similarity=0.188 Sum_probs=168.8
Q ss_pred CHHHHHHHHhCCHHHHHHHHh----cCcccccccc--CCCCChHHHHHH---HcCCHHHHHHHHhhCCCc----------
Q 042799 2 DRKLFEATQAGNVQSLHQLLG----ENPLILHTSA--LTSAGNPLHVAS---AYGHIDFVKEIINLRPDM---------- 62 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~----~~~~~~~~~~--~~~g~t~Lh~Aa---~~g~~~~v~~Ll~~~~~~---------- 62 (449)
.|+||.|++.|+.+.++.|++ .+.++..... +..|.||||+|+ ..|+.+++++|++.+++.
T Consensus 6 ~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 85 (260)
T 3jxi_A 6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSP 85 (260)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccc
Confidence 389999999999996655555 7776654432 245999999999 679999999999987432
Q ss_pred ccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccC--------------CCCCcHhHHHHHhCcHHHHHHHHh---
Q 042799 63 AQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQG--------------PEAKTPLHCAAIKGRSHAVAEMLS--- 125 (449)
Q Consensus 63 ~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~~v~~Ll~--- 125 (449)
.+..|..|+||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+|+..|+.+++++|++
T Consensus 86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 164 (260)
T 3jxi_A 86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH 164 (260)
T ss_dssp BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 2445668999999999999999999999999998 7777 689999999999999999999999
Q ss_pred hCCCcccccccCCCcHHHHHHHhCC---------HhHHHHHHHHHHhhcc-ccccccccCCCCCcccchhhhhcccchhh
Q 042799 126 ACPECVEDVTIQHYTALHLAIKSSQ---------YGVIAIIVDWIREMKK-EHIFNMRDEQGNTKIQSYDLSSNYKEQLK 195 (449)
Q Consensus 126 ~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~v~~Ll~~~~~~~~-~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~ 195 (449)
.+.+ ++.+|..|+||||+|+..++ .+++++|+++|.+++. ....+.+|.+|+|||| +|+..++
T Consensus 165 ~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~---~A~~~g~--- 237 (260)
T 3jxi_A 165 KQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLM---MAAKTGK--- 237 (260)
T ss_dssp CCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH---HHHHTTC---
T ss_pred cCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHH---HHHHcCC---
Confidence 6666 89999999999999999888 7999999999655321 1122789999999999 9999999
Q ss_pred hhhHHHHHHHHhhCcc
Q 042799 196 TWIHWQVIELLLGHQA 211 (449)
Q Consensus 196 ~~~~~~iv~~Ll~~ga 211 (449)
.+++++|+++|+
T Consensus 238 ----~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 238 ----IGIFQHIIRREI 249 (260)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhCC
Confidence 999999999997
No 52
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.98 E-value=3.6e-33 Score=268.08 Aligned_cols=230 Identities=17% Similarity=0.139 Sum_probs=182.3
Q ss_pred CCHHHHHHHHhcCcccccccc---------------CCCCChHHHHHHHcCCHHHHHHHHhhCCCcccc-cCCCCCcHHH
Q 042799 12 GNVQSLHQLLGENPLILHTSA---------------LTSAGNPLHVASAYGHIDFVKEIINLRPDMAQE-VNQDGFSPMH 75 (449)
Q Consensus 12 g~~~~v~~Ll~~~~~~~~~~~---------------~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~-~d~~g~tpLh 75 (449)
|+.++|+.|++++.+...... .....+.+|.|+..+..++++.|++.|.++ +. .|..|+||||
T Consensus 58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh 136 (327)
T 1sw6_A 58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLH 136 (327)
T ss_dssp HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHH
T ss_pred chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHH
Confidence 899999999998755322100 001234468888888899999999999998 76 8999999999
Q ss_pred HHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCc---HHHHHHHHhhCCCcccccccCCCcHHHHHHH----h
Q 042799 76 MASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGR---SHAVAEMLSACPECVEDVTIQHYTALHLAIK----S 148 (449)
Q Consensus 76 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~ 148 (449)
+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+ .++++.|++.+..+++.+|..|+||||+|+. .
T Consensus 137 ~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~ 215 (327)
T 1sw6_A 137 WLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMT 215 (327)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTST
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccc
Confidence 999999999999999999999 8999999999999999998 6888888888755689999999999999999 8
Q ss_pred CCHhHHHHHHHHHHhhc--------------cccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccc
Q 042799 149 SQYGVIAIIVDWIREMK--------------KEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANAS 214 (449)
Q Consensus 149 ~~~~~v~~Ll~~~~~~~--------------~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~ 214 (449)
|+.+++++|++.+.... .+.+++.+|..|.|||| .|+. +++|+++
T Consensus 216 g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~---~a~~-------------~~~Ll~~----- 274 (327)
T 1sw6_A 216 GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSIL---ENLD-------------LKWIIAN----- 274 (327)
T ss_dssp TCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHH---HHCS-------------HHHHHHH-----
T ss_pred ccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhH---HHHH-------------HHHHHHh-----
Confidence 99999999999864321 16789999999999999 7763 5777876
Q ss_pred cCccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 042799 215 QGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGATGMGDDNQTSTGNPPAS 271 (449)
Q Consensus 215 ~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~ 271 (449)
++|.+|..|+||||+| +..++.+++++|+++|++++.++..|.||.+.+.
T Consensus 275 ---~~n~~d~~G~TpLh~A----~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~ 324 (327)
T 1sw6_A 275 ---MLNAQDSNGDTCLNIA----ARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324 (327)
T ss_dssp ---TTTCCCTTSCCHHHHH----HHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred ---CCCCCCCCCCCHHHHH----HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 6889999999999999 6789999999999999999999999999998876
No 53
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=2.9e-32 Score=261.78 Aligned_cols=198 Identities=17% Similarity=0.159 Sum_probs=164.7
Q ss_pred HHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCc-
Q 042799 4 KLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGH- 82 (449)
Q Consensus 4 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~- 82 (449)
.+|.|+..+..++++.|++.+.+++.. .+..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+
T Consensus 100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~ 177 (327)
T 1sw6_A 100 QQHVSFDSLLQEVNDAFPNTQLNLNIP-VDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNN 177 (327)
T ss_dssp ----CHHHHHHHHHHHCTTSCCCSCSC-CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHH
T ss_pred hhHHHHHhhHHHHHHHHHhcCCCcccc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhccc
Confidence 357788888889999999998877542 2345999999999999999999999999998 8999999999999999999
Q ss_pred --HHHHHHHHHcCcccccccCCCCCcHhHHHHH----hCcHHHHHHHHhhC-------------------CCcccccccC
Q 042799 83 --TEVVRELLKVDRKLCQLQGPEAKTPLHCAAI----KGRSHAVAEMLSAC-------------------PECVEDVTIQ 137 (449)
Q Consensus 83 --~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~----~g~~~~v~~Ll~~~-------------------~~~~~~~d~~ 137 (449)
.++++.|++.+....+.+|.+|.||||+|++ .|+.++++.|++.+ ...++..|..
T Consensus 178 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 257 (327)
T 1sw6_A 178 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 257 (327)
T ss_dssp HHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--------------
T ss_pred ccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccccc
Confidence 7888889888733338999999999999999 89999999999873 3338889999
Q ss_pred CCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCc
Q 042799 138 HYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGL 217 (449)
Q Consensus 138 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~ 217 (449)
|+||||.|+. +++|+++ ++|.+|.+|+|||| +|+..++ .+++++|+++|+
T Consensus 258 g~t~L~~a~~------~~~Ll~~--------~~n~~d~~G~TpLh---~A~~~g~-------~~~v~~Ll~~Ga------ 307 (327)
T 1sw6_A 258 RKDSILENLD------LKWIIAN--------MLNAQDSNGDTCLN---IAARLGN-------ISIVDALLDYGA------ 307 (327)
T ss_dssp --CHHHHHCS------HHHHHHH--------TTTCCCTTSCCHHH---HHHHHCC-------HHHHHHHHHTTC------
T ss_pred CCChhHHHHH------HHHHHHh--------CCCCCCCCCCCHHH---HHHHcCC-------HHHHHHHHHcCC------
Confidence 9999999985 8888875 48999999999999 9999999 999999999999
Q ss_pred cccccCCCCCChHHHH
Q 042799 218 EVNAINHSGLTAIDLL 233 (449)
Q Consensus 218 ~~~~~n~~g~T~l~~A 233 (449)
+++.+|..|+||||+|
T Consensus 308 d~~~~d~~G~TpL~~A 323 (327)
T 1sw6_A 308 DPFIANKSGLRPVDFG 323 (327)
T ss_dssp CTTCCCTTSCCGGGGT
T ss_pred CCcccCCCCCCHHHHH
Confidence 9999999999999999
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=5.7e-33 Score=257.65 Aligned_cols=204 Identities=17% Similarity=0.177 Sum_probs=172.8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHh----hCCCcccccC----CCCCcHHHHHH---HcCcHHHHHHHHHcCccc-------
Q 042799 35 SAGNPLHVASAYGHIDFVKEIIN----LRPDMAQEVN----QDGFSPMHMAS---SIGHTEVVRELLKVDRKL------- 96 (449)
Q Consensus 35 ~g~t~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~d----~~g~tpLh~Aa---~~g~~~iv~~Ll~~~~~~------- 96 (449)
.++|+||.|+..|+.+.++.|++ .+.++ +..+ ..|+||||+|+ +.|+.+++++|++.|++.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 82 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence 48999999999999996555555 88876 4433 77999999999 779999999999988642
Q ss_pred ---ccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccc--------------cCCCcHHHHHHHhCCHhHHHHHHH
Q 042799 97 ---CQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVT--------------IQHYTALHLAIKSSQYGVIAIIVD 159 (449)
Q Consensus 97 ---~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~~~~~~v~~Ll~ 159 (449)
....|.+|.||||+|+..|+.+++++|++.+++ ++..| ..|+||||+|+..|+.+++++|++
T Consensus 83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 134455899999999999999999999999887 77777 589999999999999999999998
Q ss_pred ---HHHhhccccccccccCCCCCcccchhhhhcccchh--hhhhHHHHHHHHhhCccccccCccc-------cccCCCCC
Q 042799 160 ---WIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQL--KTWIHWQVIELLLGHQANASQGLEV-------NAINHSGL 227 (449)
Q Consensus 160 ---~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~--~~~~~~~iv~~Ll~~ga~~~~~~~~-------~~~n~~g~ 227 (449)
. +.++|.+|.+|+|||| +|+..++.. ......+++++|+++|+ ++ +..|..|.
T Consensus 162 ~~~~------ga~~~~~d~~g~TpLh---~A~~~~~~~~~~~~~~~~~v~~Ll~~ga------~~~~~~~~~~~~d~~g~ 226 (260)
T 3jxi_A 162 NGHK------QADLRRQDSRGNTVLH---ALVAIADNTRENTKFVTKMYDLLLIKCA------KLFPDTNLEALLNNDGL 226 (260)
T ss_dssp CSSC------CCCTTCCCTTSCCHHH---HHHHHCCSSHHHHHHHHHHHHHHHHHHH------HHCTTCCGGGCCCTTSC
T ss_pred cccc------CCCCcccCCCCCcHHH---HHHHhccCchhHHHHHHHHHHHHHHhCc------ccccccchhhcccCCCC
Confidence 6 7889999999999999 998655411 12222589999999999 66 78999999
Q ss_pred ChHHHHhhCCCCcChhHHHHHHHHcCCCCCCC
Q 042799 228 TAIDLLLIFPSEAGDREIEEILRSAGATGMGD 259 (449)
Q Consensus 228 T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~~ 259 (449)
||||+| +..++.+++++|+++|++....
T Consensus 227 tpL~~A----~~~g~~~~v~~Ll~~g~~~~~~ 254 (260)
T 3jxi_A 227 SPLMMA----AKTGKIGIFQHIIRREIADAAA 254 (260)
T ss_dssp CHHHHH----HHTTCHHHHHHHHHHHHHHHC-
T ss_pred CHHHHH----HHcCCHHHHHHHHHhCCCcccc
Confidence 999999 7789999999999999876543
No 55
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=2.6e-31 Score=230.66 Aligned_cols=154 Identities=21% Similarity=0.282 Sum_probs=83.7
Q ss_pred HHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCc
Q 042799 3 RKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGH 82 (449)
Q Consensus 3 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~ 82 (449)
||||.|++.|+.+.++.|++.++...... +..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGGY 81 (172)
T ss_dssp CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-CTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTC
T ss_pred hhHHHHHHcCCHHHHHHHHHcCcccccCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCCC
Confidence 45555555555555555555554422221 123555555555555555555555555554 4555555555555555555
Q ss_pred HHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHH
Q 042799 83 TEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDW 160 (449)
Q Consensus 83 ~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 160 (449)
.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|+++
T Consensus 82 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 82 TDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 55555555555554 45555555555555555555555555555544 455555555555555555555555555555
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=1.4e-30 Score=226.00 Aligned_cols=142 Identities=20% Similarity=0.275 Sum_probs=134.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhC
Q 042799 36 AGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKG 115 (449)
Q Consensus 36 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 115 (449)
+.||||.|+..|+.++++.|++.+++..+..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence 5689999999999999999999999867899999999999999999999999999999998 889999999999999999
Q ss_pred cHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchh
Q 042799 116 RSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYD 185 (449)
Q Consensus 116 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~ 185 (449)
+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|+++ +.+++.+|.+|+||||.++
T Consensus 81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~ 143 (172)
T 3v30_A 81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLAR------GADLTTEADSGYTPMDLAV 143 (172)
T ss_dssp CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHH
T ss_pred CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCccccCCCCCCHHHHHH
Confidence 99999999999887 889999999999999999999999999987 7889999999999999776
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.4e-31 Score=250.67 Aligned_cols=191 Identities=14% Similarity=0.198 Sum_probs=175.2
Q ss_pred HHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHH----
Q 042799 3 RKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMAS---- 78 (449)
Q Consensus 3 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa---- 78 (449)
+++|.|+..|+.+.++.+++...+......+..|.||||+|+..|+.+++++|++.|+...+..|..|.||||+|+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~ 157 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence 6789999999999999999887664445555679999999999999999999999998445899999999999999
Q ss_pred -HcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHH
Q 042799 79 -SIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAII 157 (449)
Q Consensus 79 -~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L 157 (449)
..++.+++++|++.|... ...|..|.||||+|+..|+.+++++|++.+++ ++.+|.+|+||||+|+..|+.+++++|
T Consensus 158 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~L 235 (276)
T 4hbd_A 158 KTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLL 235 (276)
T ss_dssp CSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence 678999999999999777 78899999999999999999999999999887 899999999999999999999999999
Q ss_pred HHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCc
Q 042799 158 VDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQ 210 (449)
Q Consensus 158 l~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~g 210 (449)
++. .+.+++.+|.+|+|||| +|+..++ .+++++|++++
T Consensus 236 l~~-----~gad~~~~d~~g~TpL~---~A~~~g~-------~~iv~~Ll~~~ 273 (276)
T 4hbd_A 236 LAV-----PSCDISLTDRDGSTALM---VALDAGQ-------SEIASMLYSRM 273 (276)
T ss_dssp HTS-----TTCCTTCCCTTSCCHHH---HHHHHTC-------HHHHHHHHHHC
T ss_pred Hhc-----CCCCCcCcCCCCCCHHH---HHHHcCC-------HHHHHHHHhcc
Confidence 983 28889999999999999 9999999 99999999875
No 58
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.3e-32 Score=248.80 Aligned_cols=203 Identities=15% Similarity=0.094 Sum_probs=170.1
Q ss_pred HHHHHhcCcccccccc-CCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcc
Q 042799 17 LHQLLGENPLILHTSA-LTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRK 95 (449)
Q Consensus 17 v~~Ll~~~~~~~~~~~-~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~ 95 (449)
++.|++++.+...... ..++.||||.|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN 79 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 4677887766543322 234889999999999999999999999987 88999999999999999999999999999999
Q ss_pred cccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccc-cCCCcHHHHH--HHhCCHhHHHHHHHHHHhhcccccccc
Q 042799 96 LCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVT-IQHYTALHLA--IKSSQYGVIAIIVDWIREMKKEHIFNM 172 (449)
Q Consensus 96 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A--~~~~~~~~v~~Ll~~~~~~~~~~~~n~ 172 (449)
+ +.+|..|.||||+|+..|+.+++++|++.+++ ++..+ .+|+||||+| +..|+.+++++|++. +.+++.
T Consensus 80 ~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~------ga~~~~ 151 (229)
T 2vge_A 80 V-NSPDSHGWTPLHCAASCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLADV------EQSMGL 151 (229)
T ss_dssp T-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH------HHHTTT
T ss_pred C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcChHHHHHHHHHc------CCCccc
Confidence 8 88999999999999999999999999999887 66665 6999999999 999999999999998 566888
Q ss_pred ccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHH
Q 042799 173 RDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEIL 249 (449)
Q Consensus 173 ~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~L 249 (449)
+|..|.||+| .++.... .++|++.|+ .++++.+|..|.||||+| +..++.++++.+
T Consensus 152 ~~~~~~~~l~---~~~~~~~----------~~~ll~~ga----~~~~~~~d~~G~TpL~~A----~~~g~~~~v~~~ 207 (229)
T 2vge_A 152 MNSGAVYALW---DYSAEFG----------DELSFREGE----SVTVLRRDGPEETDWWWA----ALHGQEGYVPRN 207 (229)
T ss_dssp SGGGEEEESS---CBCCSST----------TBCCBCTTC----EEEEEESSCTTCSSEEEE----EETTEEEEEEGG
T ss_pred ccCCchHHHH---HHhhccc----------cccCccccc----cccccccCCCcccHHHHH----HHcCCcceeehh
Confidence 9999999999 6665544 367888887 335889999999999999 788888888653
No 59
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=4.3e-31 Score=247.43 Aligned_cols=191 Identities=19% Similarity=0.245 Sum_probs=176.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHhhCCC-cccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHH--
Q 042799 36 AGNPLHVASAYGHIDFVKEIINLRPD-MAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAA-- 112 (449)
Q Consensus 36 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~-~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~-- 112 (449)
+.+++|.|+..|+.+.++.+++.+.+ .++..|.+|+||||+|+..|+.+++++|++.|+...+..|..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 57889999999999999999987655 237889999999999999999999999999998444899999999999999
Q ss_pred ---HhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhc
Q 042799 113 ---IKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSN 189 (449)
Q Consensus 113 ---~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~ 189 (449)
..++.++++.|++.+.. ....|..|+||||+|+.+|+.+++++|++. ++++|.+|.+|+|||| +|+.
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~------gad~n~~d~~G~TpLh---~A~~ 225 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLAC------EADVNVQDDDGSTALM---CACE 225 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHH---HHHH
T ss_pred HhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhC------CCCCCCCCCCCCCHHH---HHHH
Confidence 77899999999999866 778889999999999999999999999997 7889999999999999 9999
Q ss_pred ccchhhhhhHHHHHHHHhh-CccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcC
Q 042799 190 YKEQLKTWIHWQVIELLLG-HQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAG 253 (449)
Q Consensus 190 ~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~g 253 (449)
.++ .+++++|++ .|+ +++.+|..|.||||+| ...++.+++++|++++
T Consensus 226 ~g~-------~~iv~~Ll~~~ga------d~~~~d~~g~TpL~~A----~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 226 HGH-------KEIAGLLLAVPSC------DISLTDRDGSTALMVA----LDAGQSEIASMLYSRM 273 (276)
T ss_dssp HTC-------HHHHHHHHTSTTC------CTTCCCTTSCCHHHHH----HHHTCHHHHHHHHHHC
T ss_pred CCC-------HHHHHHHHhcCCC------CCcCcCCCCCCHHHHH----HHcCCHHHHHHHHhcc
Confidence 999 999999999 788 9999999999999999 6789999999999875
No 60
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=4.4e-30 Score=220.42 Aligned_cols=156 Identities=20% Similarity=0.261 Sum_probs=145.8
Q ss_pred CCHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 042799 1 MDRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSI 80 (449)
Q Consensus 1 ~dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~ 80 (449)
.+||||.|++.|+.+.++.|++.+.++... +..|.||||+|+. |+.+++++|+++|+++ +.+|..|+||||+|+..
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQ--NGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA 80 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCC--CTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCcccc--CccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 368999999999999999999998876433 3459999999999 9999999999999987 88899999999999999
Q ss_pred CcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHH
Q 042799 81 GHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDW 160 (449)
Q Consensus 81 g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 160 (449)
|+.+++++|+++|+++ +.+|.+|.||||+|++.|+.+++++|++.+++.++..|..|+||||+|+..|+.+++++|+++
T Consensus 81 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 81 GFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 9999999999999998 889999999999999999999999999999987789999999999999999999999999987
Q ss_pred H
Q 042799 161 I 161 (449)
Q Consensus 161 ~ 161 (449)
|
T Consensus 160 G 160 (162)
T 1ihb_A 160 G 160 (162)
T ss_dssp C
T ss_pred C
Confidence 3
No 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=2.8e-30 Score=228.34 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=151.8
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHH
Q 042799 32 ALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCA 111 (449)
Q Consensus 32 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A 111 (449)
.+..|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 108 (192)
T 2rfm_A 31 RDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWS 108 (192)
T ss_dssp CCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence 3455999999999999999999999999987 888999999999999999999999999999988 88999999999999
Q ss_pred HHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhccc
Q 042799 112 AIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYK 191 (449)
Q Consensus 112 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~ 191 (449)
+..|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|+++ +.+++.+|..|.|||| +|+..+
T Consensus 109 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~---~A~~~~ 178 (192)
T 2rfm_A 109 IIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLEL------GADISARDLTGLTAEA---SARIFG 178 (192)
T ss_dssp HHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHT------TCCTTCBCTTSCBHHH---HHHHTT
T ss_pred HHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC------CCCCCCcCCCCCCHHH---HHHHhC
Confidence 999999999999999887 889999999999999999999999999987 7889999999999999 999999
Q ss_pred chhhhhhHHHHHHHHhhCc
Q 042799 192 EQLKTWIHWQVIELLLGHQ 210 (449)
Q Consensus 192 ~~~~~~~~~~iv~~Ll~~g 210 (449)
+ .+++++|+++|
T Consensus 179 ~-------~~~v~~Ll~~~ 190 (192)
T 2rfm_A 179 R-------QEVIKIFTEVR 190 (192)
T ss_dssp C-------HHHHHHHHHHH
T ss_pred c-------HHHHHHHHhcc
Confidence 9 99999999876
No 62
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=7.4e-30 Score=220.28 Aligned_cols=157 Identities=19% Similarity=0.281 Sum_probs=92.7
Q ss_pred CChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhC
Q 042799 36 AGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKG 115 (449)
Q Consensus 36 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 115 (449)
|.||||.|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKG 80 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcC
Confidence 555666666666666666666655554 555555666666666666666666666665555 555555666666666666
Q ss_pred cHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhh
Q 042799 116 RSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLK 195 (449)
Q Consensus 116 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~ 195 (449)
+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|+++ +.+++.+|.+|+|||| +|+..++
T Consensus 81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~g~t~l~---~A~~~~~--- 147 (167)
T 3v31_A 81 YTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLES------GADPTIETDSGYNSMD---LAVALGY--- 147 (167)
T ss_dssp CHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHH---HHHHHTC---
T ss_pred CHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCCCCcCCCCCCHHH---HHHHcCc---
Confidence 66666666665554 555555566666666666666666666554 4555555666666666 6666555
Q ss_pred hhhHHHHHHHHhhCcc
Q 042799 196 TWIHWQVIELLLGHQA 211 (449)
Q Consensus 196 ~~~~~~iv~~Ll~~ga 211 (449)
.+++++|+++++
T Consensus 148 ----~~~~~~L~~~~~ 159 (167)
T 3v31_A 148 ----RSVQQVIESHLL 159 (167)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHH
Confidence 566666665554
No 63
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=6.3e-30 Score=219.43 Aligned_cols=157 Identities=22% Similarity=0.301 Sum_probs=148.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHh
Q 042799 35 SAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIK 114 (449)
Q Consensus 35 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 114 (449)
+..||||.|+..|+.+++++|+++++++ +..|..|+||||+|+. |+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA 80 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 3789999999999999999999999987 8889999999999999 9999999999999998 88999999999999999
Q ss_pred CcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccc-cccccCCCCCcccchhhhhcccch
Q 042799 115 GRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHI-FNMRDEQGNTKIQSYDLSSNYKEQ 193 (449)
Q Consensus 115 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~-~n~~d~~G~T~Lh~~~~A~~~~~~ 193 (449)
|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|+++ +.+ ++.+|..|+|||| +|+..++
T Consensus 81 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~~g~t~l~---~A~~~~~- 149 (162)
T 1ihb_A 81 GFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKH------TASNVGHRNHKGDTACD---LARLYGR- 149 (162)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH------SCCCTTCCCTTSCCHHH---HHHHTTC-
T ss_pred CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc------cCCCCCCcCCCCCcHHH---HHHHcCC-
Confidence 999999999999877 889999999999999999999999999998 444 6899999999999 9999999
Q ss_pred hhhhhHHHHHHHHhhCcc
Q 042799 194 LKTWIHWQVIELLLGHQA 211 (449)
Q Consensus 194 ~~~~~~~~iv~~Ll~~ga 211 (449)
.+++++|+++||
T Consensus 150 ------~~~~~~Ll~~GA 161 (162)
T 1ihb_A 150 ------NEVVSLMQANGA 161 (162)
T ss_dssp ------HHHHHHHHHTC-
T ss_pred ------HHHHHHHHHhCC
Confidence 999999999997
No 64
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=1.9e-29 Score=220.42 Aligned_cols=168 Identities=19% Similarity=0.207 Sum_probs=152.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHh
Q 042799 35 SAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIK 114 (449)
Q Consensus 35 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 114 (449)
.+.++||.|+..|+.+++++|++.++...+..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence 37889999999999999999999977666889999999999999999999999999999988 88899999999999999
Q ss_pred CcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchh
Q 042799 115 GRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQL 194 (449)
Q Consensus 115 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~ 194 (449)
|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|+++ +.+++.+|..|.|||| +|+..++
T Consensus 83 ~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~tpl~---~A~~~~~-- 150 (179)
T 3f6q_A 83 GHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVAN------GALVSICNKYGEMPVD---KAKAPLR-- 150 (179)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCSSBCCTTSCCGGG---GSCHHHH--
T ss_pred CCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHC------CCCcchhccCCCCcHH---HHHHHHH--
Confidence 999999999999887 889999999999999999999999999987 7889999999999999 9999988
Q ss_pred hhhhHHHHHHHHhhCccccccCccccccCCCC
Q 042799 195 KTWIHWQVIELLLGHQANASQGLEVNAINHSG 226 (449)
Q Consensus 195 ~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g 226 (449)
.+++++|+++|+ +++..+.++
T Consensus 151 -----~~~~~~L~~~g~------~~~~~~~~~ 171 (179)
T 3f6q_A 151 -----ELLRERAEKMGQ------NLNRIPYKD 171 (179)
T ss_dssp -----HHHHHHHHHTTC------CCSCBCCCC
T ss_pred -----HHHHHHHHHhhc------CcccCCccc
Confidence 999999999998 677665543
No 65
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=1.6e-29 Score=218.73 Aligned_cols=157 Identities=25% Similarity=0.342 Sum_probs=132.9
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHh
Q 042799 35 SAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIK 114 (449)
Q Consensus 35 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 114 (449)
.+.|+||.|+..|+.+++++|+++|.++ +..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 90 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALF 90 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred cccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence 3678888888888888888888888876 777888888888888888888888888888877 77888888888888888
Q ss_pred CcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchh
Q 042799 115 GRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQL 194 (449)
Q Consensus 115 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~ 194 (449)
|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|+++ +.+++.+|..|.|||| +|+..++
T Consensus 91 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~g~t~l~---~A~~~~~-- 158 (169)
T 2y1l_E 91 GHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKN------GADVNAQDKFGKTAFD---ISIDNGN-- 158 (169)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHH---HHHHTTC--
T ss_pred CCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCCCCcCCCCCCHHH---HHHHhCC--
Confidence 888888888888776 778888888888888888888888888886 6778888888888888 8888888
Q ss_pred hhhhHHHHHHHHhhCc
Q 042799 195 KTWIHWQVIELLLGHQ 210 (449)
Q Consensus 195 ~~~~~~~iv~~Ll~~g 210 (449)
.+++++|++.|
T Consensus 159 -----~~~~~~L~~~G 169 (169)
T 2y1l_E 159 -----EDLAEILQKLN 169 (169)
T ss_dssp -----HHHHHHHHTC-
T ss_pred -----HHHHHHHHHcC
Confidence 88888888765
No 66
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=2.8e-29 Score=213.52 Aligned_cols=150 Identities=23% Similarity=0.337 Sum_probs=141.4
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
+|+||.|++.|+.+.++.|++.+++.. .+..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 78 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG 78 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence 589999999999999999999988653 2445999999999999999999999999997 888999999999999999
Q ss_pred cHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHH
Q 042799 82 HTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAII 157 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L 157 (449)
+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+.+|+.+++++|
T Consensus 79 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 79 HANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 999999999999998 88999999999999999999999999999887 889999999999999999999999987
No 67
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.6e-29 Score=217.80 Aligned_cols=159 Identities=20% Similarity=0.326 Sum_probs=143.9
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHH
Q 042799 34 TSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAI 113 (449)
Q Consensus 34 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 113 (449)
..|.||||.|+..|+.++++.|++.++...+..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+.
T Consensus 6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACS 84 (165)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHH
Confidence 348899999999999999999999776555788888999999999999999999999999988 8899999999999999
Q ss_pred hCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccch
Q 042799 114 KGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQ 193 (449)
Q Consensus 114 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~ 193 (449)
.|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|+++ +.+++.+|.+|+|||| +|.. ++
T Consensus 85 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~---~a~~-~~- 152 (165)
T 3twr_A 85 YGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQH------GADPTKKNRDGNTPLD---LVKD-GD- 152 (165)
T ss_dssp TTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCTGG---GSCT-TC-
T ss_pred cCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCCcccCCCCCChhH---hHhc-CC-
Confidence 9999999999999887 888999999999999999999999999987 7888999999999999 8776 77
Q ss_pred hhhhhHHHHHHHHhhCcc
Q 042799 194 LKTWIHWQVIELLLGHQA 211 (449)
Q Consensus 194 ~~~~~~~~iv~~Ll~~ga 211 (449)
.+++++|+++||
T Consensus 153 ------~~i~~~L~~~gA 164 (165)
T 3twr_A 153 ------TDIQDLLRGDAA 164 (165)
T ss_dssp ------HHHHHHHHTC--
T ss_pred ------hHHHHHHhhccc
Confidence 899999999886
No 68
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=5.8e-30 Score=226.29 Aligned_cols=163 Identities=21% Similarity=0.236 Sum_probs=154.6
Q ss_pred ccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHH
Q 042799 63 AQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTAL 142 (449)
Q Consensus 63 ~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 142 (449)
.+.+|..|+||||+|+..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|++.+++ ++..|..|+|||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L 105 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTPL 105 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHH
Confidence 3667999999999999999999999999999888 88999999999999999999999999999887 889999999999
Q ss_pred HHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCcccccc
Q 042799 143 HLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAI 222 (449)
Q Consensus 143 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~ 222 (449)
|+|+..|+.+++++|+++ +.+++.+|..|+|||| +|+..++ .+++++|+++|+ +++.+
T Consensus 106 ~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~---~A~~~~~-------~~~v~~Ll~~ga------~~~~~ 163 (192)
T 2rfm_A 106 MWSIIFGYSEMSYFLLEH------GANVNDRNLEGETPLI---VASKYGR-------SEIVKKLLELGA------DISAR 163 (192)
T ss_dssp HHHHHHTCHHHHHHHHHT------TCCSSCCCTTCCCHHH---HHHHHTC-------HHHHHHHHHTTC------CTTCB
T ss_pred HHHHHcCCHHHHHHHHHC------CCCCCCCCCCCCCHHH---HHHHcCC-------HHHHHHHHHCCC------CCCCc
Confidence 999999999999999987 7889999999999999 9999999 999999999998 89999
Q ss_pred CCCCCChHHHHhhCCCCcChhHHHHHHHHcC
Q 042799 223 NHSGLTAIDLLLIFPSEAGDREIEEILRSAG 253 (449)
Q Consensus 223 n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~g 253 (449)
|..|.||+|+| ...++.+++++|+++|
T Consensus 164 ~~~g~t~l~~A----~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 164 DLTGLTAEASA----RIFGRQEVIKIFTEVR 190 (192)
T ss_dssp CTTSCBHHHHH----HHTTCHHHHHHHHHHH
T ss_pred CCCCCCHHHHH----HHhCcHHHHHHHHhcc
Confidence 99999999999 6789999999999875
No 69
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=6e-29 Score=215.17 Aligned_cols=154 Identities=27% Similarity=0.426 Sum_probs=144.4
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
.++|+.|++.|+.+++++|++.+.+++.. +..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|
T Consensus 15 ~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 15 GKKLLEAARAGRDDEVRILMANGADVNAE--DASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFG 91 (169)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHcCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcC
Confidence 47999999999999999999999876433 345999999999999999999999999987 888999999999999999
Q ss_pred cHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHH
Q 042799 82 HTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDW 160 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 160 (449)
+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++++.+ ++.+|..|.||||+|+.+|+.+++++|++.
T Consensus 92 ~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 92 HLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168 (169)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred CHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 999999999999998 88999999999999999999999999999887 889999999999999999999999999864
No 70
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=2.3e-29 Score=217.22 Aligned_cols=162 Identities=19% Similarity=0.218 Sum_probs=152.9
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHh
Q 042799 69 DGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKS 148 (449)
Q Consensus 69 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 148 (449)
.|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHc
Confidence 5889999999999999999999999887 88999999999999999999999999999877 888999999999999999
Q ss_pred CCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCC
Q 042799 149 SQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLT 228 (449)
Q Consensus 149 ~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T 228 (449)
|+.+++++|++. +.+++.+|..|+|||| .|+..++ .+++++|+++|+ +++.+|..|.|
T Consensus 80 ~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~---~A~~~~~-------~~~v~~Ll~~g~------~~~~~~~~g~t 137 (167)
T 3v31_A 80 GYTDIVKMLLDC------GVDVNEYDWNGGTPLL---YAVHGNH-------VKCVKMLLESGA------DPTIETDSGYN 137 (167)
T ss_dssp TCHHHHHHHHHH------TCCTTCCCTTSCCHHH---HHHHTTC-------HHHHHHHHHTTC------CTTCCCTTSCC
T ss_pred CCHHHHHHHHHC------CCCCCcCCCCCCCHHH---HHHHcCC-------HHHHHHHHHcCC------CCCCcCCCCCC
Confidence 999999999998 7889999999999999 9999999 999999999998 89999999999
Q ss_pred hHHHHhhCCCCcChhHHHHHHHHcCCCCCC
Q 042799 229 AIDLLLIFPSEAGDREIEEILRSAGATGMG 258 (449)
Q Consensus 229 ~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~ 258 (449)
|+|+| ...++.+++++|++++++...
T Consensus 138 ~l~~A----~~~~~~~~~~~L~~~~~~~~~ 163 (167)
T 3v31_A 138 SMDLA----VALGYRSVQQVIESHLLKLLQ 163 (167)
T ss_dssp HHHHH----HHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHH----HHcCcHHHHHHHHHHHHHHHH
Confidence 99999 678999999999999876544
No 71
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=1.1e-28 Score=210.33 Aligned_cols=153 Identities=19% Similarity=0.317 Sum_probs=139.7
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
+||||.|++.|+.+.++.|++. ........+..|.||||+ +..|+.+++++|+++|+++ +..|..|.||||+|+..|
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred chHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence 5899999999999999999998 322223334559999999 9999999999999999997 889999999999999999
Q ss_pred cHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHH
Q 042799 82 HTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDW 160 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 160 (449)
+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++. .+ ++..|..|+||||+|+..|+.+++++|+++
T Consensus 80 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 80 FLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999999999999998 88999999999999999999999999999 54 889999999999999999999999999864
No 72
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=3.6e-30 Score=235.93 Aligned_cols=214 Identities=17% Similarity=0.192 Sum_probs=150.9
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
.||||.|++.|+.+.++.|+++|.++... ..|.||||.|+..|+.+++++|+++|+++ +..|..|+||||+|+..|
T Consensus 6 ~t~L~~a~~~~~~~~~~~ll~~g~~~~~~---~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g 81 (239)
T 1ycs_B 6 QVSLPPGKRTNLRKTGSERIAHGMRVKFN---PLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAG 81 (239)
T ss_dssp ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHT
T ss_pred cccCchhhhhhhHHHHHHHhccCCCcccC---chhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcC
Confidence 59999999999999999999999877532 34899999999999999999999999987 889999999999999999
Q ss_pred cHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCC-cHHHHH--HHhCCHhHHHHHH
Q 042799 82 HTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHY-TALHLA--IKSSQYGVIAIIV 158 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~~v~~Ll 158 (449)
+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++++++ ++..|..|. ||||+| +..|+.+++++|+
T Consensus 82 ~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll 159 (239)
T 1ycs_B 82 HTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 159 (239)
T ss_dssp CHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred CHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHHHH
Confidence 999999999999998 89999999999999999999999999999988 788887777 999999 8899999999999
Q ss_pred HHHHhhcc---ccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHH
Q 042799 159 DWIREMKK---EHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLL 233 (449)
Q Consensus 159 ~~~~~~~~---~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A 233 (449)
+.+.+.+. +......|..|.++++ ++...|. +++.|.+.+.+...--.....+..|.+|.++.
T Consensus 160 ~~~a~~~~~~~~~~~al~d~~~~~~~e---La~~~G~---------~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv 225 (239)
T 1ycs_B 160 GVQEKMGIMNKGVIYALWDYEPQNDDE---LPMKEGD---------CMTIIHREDEDEIEWWWARLNDKEGYVPRNLL 225 (239)
T ss_dssp HHHHHTTTTGGGEEEESSCBCCSSTTB---CCBCSSC---------EEEECCCCTTSCSSEEEEEETTEEEEEEGGGE
T ss_pred HhhhcccccccceEEEEeccCCCCCCc---ccccCCC---------EEEEEEecCCCCCCEEEEEECCcEEEeehHHe
Confidence 99766431 2223345888999999 8888776 33444444331000001234567788898876
No 73
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=7.1e-29 Score=216.75 Aligned_cols=166 Identities=19% Similarity=0.201 Sum_probs=153.4
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHH
Q 042799 68 QDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIK 147 (449)
Q Consensus 68 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 147 (449)
.++.+|||.|+..|+.+++++|++.+....+.+|..|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence 46789999999999999999999996655588999999999999999999999999999877 88999999999999999
Q ss_pred hCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCC
Q 042799 148 SSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGL 227 (449)
Q Consensus 148 ~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~ 227 (449)
.|+.+++++|+++ +.++|.+|.+|+|||| +|+..++ .+++++|+++|+ +++.+|..|.
T Consensus 82 ~~~~~~v~~Ll~~------g~~~~~~d~~g~t~L~---~A~~~~~-------~~~v~~Ll~~ga------~~~~~~~~g~ 139 (179)
T 3f6q_A 82 HGHRDIVQKLLQY------KADINAVNEHGNVPLH---YACFWGQ-------DQVAEDLVANGA------LVSICNKYGE 139 (179)
T ss_dssp TTCHHHHHHHHHT------TCCTTCCCTTSCCHHH---HHHHTTC-------HHHHHHHHHTTC------CSSBCCTTSC
T ss_pred cCCHHHHHHHHHc------CCCCCccCCCCCCHHH---HHHHcCC-------HHHHHHHHHCCC------CcchhccCCC
Confidence 9999999999987 7889999999999999 9999999 999999999998 8999999999
Q ss_pred ChHHHHhhCCCCcChhHHHHHHHHcCCCCCCCC
Q 042799 228 TAIDLLLIFPSEAGDREIEEILRSAGATGMGDD 260 (449)
Q Consensus 228 T~l~~A~~~~~~~~~~~i~~~Ll~~ga~~~~~~ 260 (449)
||+|+| ...++.+++++|+++|++++...
T Consensus 140 tpl~~A----~~~~~~~~~~~L~~~g~~~~~~~ 168 (179)
T 3f6q_A 140 MPVDKA----KAPLRELLRERAEKMGQNLNRIP 168 (179)
T ss_dssp CGGGGS----CHHHHHHHHHHHHHTTCCCSCBC
T ss_pred CcHHHH----HHHHHHHHHHHHHHhhcCcccCC
Confidence 999999 78899999999999999988754
No 74
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=1.3e-28 Score=209.30 Aligned_cols=151 Identities=23% Similarity=0.329 Sum_probs=143.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhC
Q 042799 36 AGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKG 115 (449)
Q Consensus 36 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 115 (449)
..|+||.|+..|+.+++++|+++|++. + .|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 78 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG 78 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence 468999999999999999999999876 3 5889999999999999999999999999998 889999999999999999
Q ss_pred cHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhh
Q 042799 116 RSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLK 195 (449)
Q Consensus 116 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~ 195 (449)
+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|+++ +.+++.+|.+|+|||| +|+..++
T Consensus 79 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~---~A~~~~~--- 145 (153)
T 1awc_B 79 HANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKY------GADVHTQSKFCKTAFD---ISIDNGN--- 145 (153)
T ss_dssp CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHH---HHHHTTC---
T ss_pred hHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCccccCCCCCCHHH---HHHHcCC---
Confidence 99999999999887 889999999999999999999999999997 7889999999999999 9999999
Q ss_pred hhhHHHHHHHH
Q 042799 196 TWIHWQVIELL 206 (449)
Q Consensus 196 ~~~~~~iv~~L 206 (449)
.+++++|
T Consensus 146 ----~~i~~~L 152 (153)
T 1awc_B 146 ----EDLAEIL 152 (153)
T ss_dssp ----HHHHHHH
T ss_pred ----HHHHHHh
Confidence 9999886
No 75
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=6e-29 Score=214.14 Aligned_cols=161 Identities=27% Similarity=0.361 Sum_probs=147.5
Q ss_pred cCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHH
Q 042799 66 VNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLA 145 (449)
Q Consensus 66 ~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 145 (449)
.|.+|.||||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHH
Confidence 4677899999999999999999999976655577888999999999999999999999999887 889999999999999
Q ss_pred HHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCC
Q 042799 146 IKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHS 225 (449)
Q Consensus 146 ~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~ 225 (449)
+..|+.+++++|+++ +.+++.+|..|+|||| +|+..++ .+++++|+++|+ +++.+|..
T Consensus 83 ~~~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~---~A~~~~~-------~~~v~~Ll~~ga------~~~~~~~~ 140 (165)
T 3twr_A 83 CSYGHYEVAELLVKH------GAVVNVADLWKFTPLH---EAAAKGK-------YEICKLLLQHGA------DPTKKNRD 140 (165)
T ss_dssp HHTTCHHHHHHHHHT------TCCTTCCCTTCCCHHH---HHHHTTC-------HHHHHHHHHTTC------CTTCCCTT
T ss_pred HHcCcHHHHHHHHhC------CCCCCCcCCCCCCHHH---HHHHcCC-------HHHHHHHHHcCC------CCcccCCC
Confidence 999999999999997 7889999999999999 9999999 999999999998 89999999
Q ss_pred CCChHHHHhhCCCCcChhHHHHHHHHcCC
Q 042799 226 GLTAIDLLLIFPSEAGDREIEEILRSAGA 254 (449)
Q Consensus 226 g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga 254 (449)
|.||+|+| .. ++.+++++|++.||
T Consensus 141 g~t~l~~a----~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 141 GNTPLDLV----KD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp SCCTGGGS----CT-TCHHHHHHHHTC--
T ss_pred CCChhHhH----hc-CChHHHHHHhhccc
Confidence 99999998 45 78899999999886
No 76
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=5.5e-28 Score=206.00 Aligned_cols=154 Identities=22% Similarity=0.326 Sum_probs=143.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhC
Q 042799 36 AGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKG 115 (449)
Q Consensus 36 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 115 (449)
+.||||.|+..|+.++++.|+++.+...+..|..|+||||+ +..|+.+++++|+++|+++ +.+|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence 57999999999999999999999433348889999999999 9999999999999999998 889999999999999999
Q ss_pred cHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhh
Q 042799 116 RSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLK 195 (449)
Q Consensus 116 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~ 195 (449)
+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++. .+++.+|.+|+|||| +|+..++
T Consensus 80 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------~~~~~~~~~g~t~l~---~A~~~~~--- 145 (156)
T 1bd8_A 80 FLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-------SDLHRRDARGLTPLE---LALQRGA--- 145 (156)
T ss_dssp CHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-------SCTTCCCTTSCCHHH---HHHHSCC---
T ss_pred cHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-------cCCCCcCCCCCCHHH---HHHHcCc---
Confidence 99999999999877 889999999999999999999999999874 568899999999999 9999999
Q ss_pred hhhHHHHHHHHhhC
Q 042799 196 TWIHWQVIELLLGH 209 (449)
Q Consensus 196 ~~~~~~iv~~Ll~~ 209 (449)
.+++++|+++
T Consensus 146 ----~~~v~~Ll~~ 155 (156)
T 1bd8_A 146 ----QDLVDILQGH 155 (156)
T ss_dssp ----HHHHHHHHTT
T ss_pred ----HHHHHHHHhh
Confidence 9999999975
No 77
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=8.9e-29 Score=226.65 Aligned_cols=173 Identities=16% Similarity=0.083 Sum_probs=127.9
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHh
Q 042799 35 SAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIK 114 (449)
Q Consensus 35 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 114 (449)
.|.||||.|+..|+.+.++.|+++|.++ +. +..|.||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRV-KF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCA 80 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHH
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCc-cc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence 3999999999999999999999999887 43 478899999999999999999999999988 88999999999999999
Q ss_pred CcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCC-Ccccchhhh--hccc
Q 042799 115 GRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGN-TKIQSYDLS--SNYK 191 (449)
Q Consensus 115 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~-T~Lh~~~~A--~~~~ 191 (449)
|+.+++++|++++.+ ++.+|..|+||||+|+..|+.+++++|+++ +++++.+|..|. |||| +| +..+
T Consensus 81 g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~~~~t~l~---~a~~~~~g 150 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVES------GAAVFAMTYSDMQTAAD---KCEEMEEG 150 (239)
T ss_dssp TCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCSSSCCCHHH---HCCSSSTT
T ss_pred CCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCcceecCCCCcchHH---HHHHhhhc
Confidence 999999999999887 899999999999999999999999999997 788999998887 9999 88 7788
Q ss_pred chhhhhhHHHHHHHHhhCccccccCcccccc---------CCCCCChHHHH
Q 042799 192 EQLKTWIHWQVIELLLGHQANASQGLEVNAI---------NHSGLTAIDLL 233 (449)
Q Consensus 192 ~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~---------n~~g~T~l~~A 233 (449)
+ .+++++|+++|+ +++.. +..+.++.+++
T Consensus 151 ~-------~~~~~~Ll~~~a------~~~~~~~~~~~al~d~~~~~~~eLa 188 (239)
T 1ycs_B 151 Y-------TQCSQFLYGVQE------KMGIMNKGVIYALWDYEPQNDDELP 188 (239)
T ss_dssp C-------CCHHHHHHHHHH------HTTTTGGGEEEESSCBCCSSTTBCC
T ss_pred c-------HHHHHHHHHhhh------cccccccceEEEEeccCCCCCCccc
Confidence 8 999999999998 55544 55667776666
No 78
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.1e-29 Score=229.14 Aligned_cols=192 Identities=16% Similarity=0.094 Sum_probs=161.6
Q ss_pred HHHHHhhCCCcc--cccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCC
Q 042799 52 VKEIINLRPDMA--QEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPE 129 (449)
Q Consensus 52 v~~Ll~~~~~~~--~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~ 129 (449)
++.|+++++++. +..+..|.||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..|+.+++++|++.+.+
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN 79 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 467888887652 345667789999999999999999999999988 88999999999999999999999999999877
Q ss_pred cccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhcccccccccc-CCCCCcccchhhh--hcccchhhhhhHHHHHHHH
Q 042799 130 CVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRD-EQGNTKIQSYDLS--SNYKEQLKTWIHWQVIELL 206 (449)
Q Consensus 130 ~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d-~~G~T~Lh~~~~A--~~~~~~~~~~~~~~iv~~L 206 (449)
++..|..|+||||+|+..|+.+++++|++. +.+++.+| .+|+|||| +| +..++ .+++++|
T Consensus 80 -~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~------ga~~~~~~~~~g~tpL~---~A~a~~~~~-------~~~v~~L 142 (229)
T 2vge_A 80 -VNSPDSHGWTPLHCAASCNDTVICMALVQH------GAAIFATTLSDGATAFE---KCDPYREGY-------ADCATYL 142 (229)
T ss_dssp -TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT------TCCTTCCCSSTTCCTGG---GCCTTSTTH-------HHHHHHH
T ss_pred -CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCcccccCCCCCCHHH---HHHHHhcCh-------HHHHHHH
Confidence 899999999999999999999999999987 78889887 69999999 98 89999 9999999
Q ss_pred hhCccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcCCC--CCCCCCCCCCCCCCCCCCC
Q 042799 207 LGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGAT--GMGDDNQTSTGNPPASSAE 274 (449)
Q Consensus 207 l~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~--~~~~~~~~~~~~~~~~~~~ 274 (449)
+++|+ +++..|..|.||++.+ .... ..++|++.|++ .+.++..|.||.+.+....
T Consensus 143 l~~ga------~~~~~~~~~~~~l~~~----~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g 199 (229)
T 2vge_A 143 ADVEQ------SMGLMNSGAVYALWDY----SAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHG 199 (229)
T ss_dssp HHHHH------HTTTSGGGEEEESSCB----CCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETT
T ss_pred HHcCC------CcccccCCchHHHHHH----hhcc---ccccCccccccccccccCCCcccHHHHHHHcC
Confidence 99999 8999999999998865 2222 23678889998 6778889999999987433
No 79
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=1.6e-29 Score=245.73 Aligned_cols=223 Identities=15% Similarity=0.105 Sum_probs=163.6
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCcccccc-ccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcc--cccCCCCCcHHHHHH
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHT-SALTSAGNPLHVASAYGHIDFVKEIINLRPDMA--QEVNQDGFSPMHMAS 78 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~-~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~--~~~d~~g~tpLh~Aa 78 (449)
+||||.|++.|+.++|+.|++.+...... ..+..|.||||+||..|+.++|++|+++|++.. +..+.+ +||||+||
T Consensus 93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa 171 (376)
T 2aja_A 93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA 171 (376)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence 38999999999999999999988622111 111238899999999999999999999997521 222223 99999999
Q ss_pred HcCcHHHHHHHHHcCcccccc--cCCCCCcHhHHHH-HhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHH
Q 042799 79 SIGHTEVVRELLKVDRKLCQL--QGPEAKTPLHCAA-IKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIA 155 (449)
Q Consensus 79 ~~g~~~iv~~Ll~~~~~~~~~--~d~~g~tpLh~A~-~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~ 155 (449)
..|+.+++++|+++|+++ +. .|.+|.||||+|+ .+|+.+++++|++.+. .|.||||+|+.+|+.++++
T Consensus 172 ~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~ 242 (376)
T 2aja_A 172 ENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNP 242 (376)
T ss_dssp HTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHH
T ss_pred HCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHH
Confidence 999999999999999987 44 7888999999999 9999999999999542 3889999999999999999
Q ss_pred HHHHHHHhhccccccccccCCCCCcccchhhhhcccchh--------------------hhhhHHHHHHHHhhCcccccc
Q 042799 156 IIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQL--------------------KTWIHWQVIELLLGHQANASQ 215 (449)
Q Consensus 156 ~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~--------------------~~~~~~~iv~~Ll~~ga~~~~ 215 (449)
+|++.+.+. +..|. +++ .|+..|+.. ......+.+++|++.++...
T Consensus 243 lL~~~ga~~------~~~~~----~l~---~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~- 308 (376)
T 2aja_A 243 FIARHVNRL------KEMHD----AFK---LSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA- 308 (376)
T ss_dssp HHHHHHHHH------HHHHT----TTT---TTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGG-
T ss_pred HHHhcCccc------ccccH----HHH---HHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhh-
Confidence 999986543 33322 333 333222210 00112567888887653110
Q ss_pred CccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHc
Q 042799 216 GLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSA 252 (449)
Q Consensus 216 ~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ 252 (449)
-.+.....+.+.||+|+| ...++.+++++|++.
T Consensus 309 l~~~g~~~n~~~~~L~~A----~~~g~~e~v~lLl~~ 341 (376)
T 2aja_A 309 LAPTATIPGDANELLRLA----LRLGNQGACALLLSI 341 (376)
T ss_dssp GSSCCSSTTCCCHHHHHH----HHHTCTTHHHHHTTS
T ss_pred hhccCCCCCCccHHHHHH----HHcCcHHHHHHHHcC
Confidence 001122234567899999 678899999999864
No 80
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=3.2e-27 Score=207.36 Aligned_cols=155 Identities=14% Similarity=0.045 Sum_probs=138.7
Q ss_pred HHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCH----HHHHHHHhhCCCcccccCCCCCcHHHHHH
Q 042799 3 RKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHI----DFVKEIINLRPDMAQEVNQDGFSPMHMAS 78 (449)
Q Consensus 3 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa 78 (449)
++||.|++.|+.+.++.+++.+.+... +..|+||||+|+..|+. +++++|+++|+++ +.+|..|+||||+|+
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~~---~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGYEDKE---SVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPLF 83 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSSSCHH---HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCccccc---ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHH
Confidence 689999999999999999998765422 13499999999999985 5999999999998 899999999999999
Q ss_pred HcCc------HHHHHHHHHcCcccccccCCCCC-cHhHHHHHhC-----cHHHHHHHHh-hCCCcccccccCCCcHHHHH
Q 042799 79 SIGH------TEVVRELLKVDRKLCQLQGPEAK-TPLHCAAIKG-----RSHAVAEMLS-ACPECVEDVTIQHYTALHLA 145 (449)
Q Consensus 79 ~~g~------~~iv~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~g-----~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A 145 (449)
..|+ .+++++|+++|+++ +.+|..|. ||||+|+..+ +.+++++|++ ++.+ ++.+|..|+||||+|
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-~~~~d~~G~TpL~~A 161 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKDKWGLTALEFV 161 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-TTCCCTTSCCHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-CcccCCCCCCHHHHH
Confidence 9987 68999999999999 99999999 9999999944 4679999999 7776 999999999999999
Q ss_pred HHhCCHhHHHHHHHHHHh
Q 042799 146 IKSSQYGVIAIIVDWIRE 163 (449)
Q Consensus 146 ~~~~~~~~v~~Ll~~~~~ 163 (449)
++.|+.+++++|.++.+.
T Consensus 162 ~~~~~~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 162 KRCQKPIALKMMEDYIKK 179 (186)
T ss_dssp HTTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999988543
No 81
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=3.8e-28 Score=236.05 Aligned_cols=174 Identities=16% Similarity=0.160 Sum_probs=142.4
Q ss_pred HHHHHHH-hCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCc--ccccCCCCCcHHHHHHHc
Q 042799 4 KLFEATQ-AGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDM--AQEVNQDGFSPMHMASSI 80 (449)
Q Consensus 4 ~L~~Aa~-~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~Aa~~ 80 (449)
.++.|.. .++.+.++.+++++.+ +.||||.|+..|+.+++++|+++|+.. ....|..|.||||+||..
T Consensus 68 ~~~~a~~~~~~~~~~~~l~~~g~~---------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~ 138 (376)
T 2aja_A 68 CLYYAHYNRNAKQLWSDAHKKGIK---------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN 138 (376)
T ss_dssp HHHHHHTTTTCTTHHHHHHHHTCC---------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHcCCC---------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc
Confidence 4555554 4667777777776532 569999999999999999999998722 123456788999999999
Q ss_pred CcHHHHHHHHHcCccc--ccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccc--cccCCCcHHHHHH-HhCCHhHHH
Q 042799 81 GHTEVVRELLKVDRKL--CQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVED--VTIQHYTALHLAI-KSSQYGVIA 155 (449)
Q Consensus 81 g~~~iv~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~--~d~~g~t~Lh~A~-~~~~~~~v~ 155 (449)
|+.+++++|+++|++. .+..+.+ .||||+|+..|+.+++++|++++++ ++. .|..|+||||+|+ .+|+.++++
T Consensus 139 G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~Aa~~~G~~eiv~ 216 (376)
T 2aja_A 139 GHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVIN 216 (376)
T ss_dssp TCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred CCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCc-cchhccCCCCCCHHHHHHHHCCCHHHHH
Confidence 9999999999999742 1233333 9999999999999999999999887 555 8889999999999 999999999
Q ss_pred HHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCcc
Q 042799 156 IIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQA 211 (449)
Q Consensus 156 ~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga 211 (449)
+|++.+. .|+|||| .|+..|+ .+++++|+++|+
T Consensus 217 ~Ll~~ga-------------~~~taL~---~Aa~~g~-------~evv~lL~~~ga 249 (376)
T 2aja_A 217 FLLDCPV-------------MLAYAEI---HEFEYGE-------KYVNPFIARHVN 249 (376)
T ss_dssp HHTTSHH-------------HHHHHHH---CTTTTTT-------TTHHHHHHHHHH
T ss_pred HHHhCCC-------------ccchHHH---HHHHCCC-------HHHHHHHHhcCc
Confidence 9998631 2889999 9999999 999999999998
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=1.4e-26 Score=197.48 Aligned_cols=140 Identities=16% Similarity=0.160 Sum_probs=117.7
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCc-HhHHH
Q 042799 33 LTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKT-PLHCA 111 (449)
Q Consensus 33 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-pLh~A 111 (449)
+..|.||||.|+..|+.+++++|+++|+++ +..|..|+||||+|+ .|+.+++++|+++|+++ +.+|..|.| |||+|
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A 85 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDA 85 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence 345999999999999999999999999987 888999999999986 99999999999999998 889999999 99999
Q ss_pred HHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCccc
Q 042799 112 AIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQ 182 (449)
Q Consensus 112 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh 182 (449)
+..|+.+++++|++++.+ ++.+|..|+||||+|+..|+.+++++|+++ +++++.+|..|.||.+
T Consensus 86 ~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 86 AREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAA------AGGTRGSNHARIDAAE 149 (156)
T ss_dssp HHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSC------C---------------
T ss_pred HHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHc------CCCCCccCcCcCcccc
Confidence 999999999999999887 889999999999999999999999999987 8889999999999987
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=9.5e-27 Score=204.36 Aligned_cols=156 Identities=8% Similarity=0.014 Sum_probs=140.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcH----HHHHHHHHcCcccccccCCCCCcHhHHH
Q 042799 36 AGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHT----EVVRELLKVDRKLCQLQGPEAKTPLHCA 111 (449)
Q Consensus 36 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~d~~g~tpLh~A 111 (449)
+.++|+.|+..|+.+.++.+++.+.+. ..|..|+||||+|+..|+. +++++|+++|+++ +.+|.+|+||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence 678999999999999999999987543 2237899999999999975 5999999999999 99999999999999
Q ss_pred HHhCc------HHHHHHHHhhCCCcccccccCCC-cHHHHHHHhC-----CHhHHHHHHH-HHHhhccccccccccCCCC
Q 042799 112 AIKGR------SHAVAEMLSACPECVEDVTIQHY-TALHLAIKSS-----QYGVIAIIVD-WIREMKKEHIFNMRDEQGN 178 (449)
Q Consensus 112 ~~~g~------~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~~-----~~~~v~~Ll~-~~~~~~~~~~~n~~d~~G~ 178 (449)
+..|+ .+++++|++++.+ ++.+|..|+ ||||+|+..+ +.+++++|++ . +++++.+|..|+
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~------gad~~~~d~~G~ 155 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS------GLQLLIKDKWGL 155 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTST------TCCTTCCCTTSC
T ss_pred HHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhc------CCCCcccCCCCC
Confidence 99987 5889999999987 999999999 9999999954 4568999998 6 889999999999
Q ss_pred CcccchhhhhcccchhhhhhHHHHHHHHhhCcc
Q 042799 179 TKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQA 211 (449)
Q Consensus 179 T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga 211 (449)
|||| +|++.++ .+++++|.+...
T Consensus 156 TpL~---~A~~~~~-------~~~v~~L~~~~~ 178 (186)
T 3t8k_A 156 TALE---FVKRCQK-------PIALKMMEDYIK 178 (186)
T ss_dssp CHHH---HHHTTTC-------HHHHHHHHHHHH
T ss_pred CHHH---HHHHcCC-------HHHHHHHHHHHH
Confidence 9999 9999999 999999998765
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=3.3e-26 Score=195.12 Aligned_cols=145 Identities=16% Similarity=0.185 Sum_probs=119.1
Q ss_pred cccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCc-HH
Q 042799 64 QEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYT-AL 142 (449)
Q Consensus 64 ~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-~L 142 (449)
...+..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+ .|+.+++++|++.+.+ ++.+|..|+| ||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttpL 82 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPV 82 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHHH
Confidence 456788999999999999999999999999988 889999999999985 9999999999999877 8999999999 99
Q ss_pred HHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCcccccc
Q 042799 143 HLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAI 222 (449)
Q Consensus 143 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~ 222 (449)
|+|+..|+.+++++|+++ +.+++.+|..|+|||| +|+..++ .+++++|+++|+ +++.+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~------ga~~~~~d~~g~tpl~---~A~~~~~-------~~~v~~Ll~~ga------~~~~~ 140 (156)
T 1bi7_B 83 HDAAREGFLDTLVVLHRA------GARLDVRDAWGRLPVD---LAEELGH-------RDVARYLRAAAG------GTRGS 140 (156)
T ss_dssp HHHHHHTCHHHHHHHHHH------TCCSSCCCTTCCCHHH---HHHHHTC-------HHHHHHHSSCC------------
T ss_pred HHHHHCCCHHHHHHHHHc------CCCCcccCCCCCCHHH---HHHHhCH-------HHHHHHHHHcCC------CCCcc
Confidence 999999999999999998 7889999999999999 9999999 999999999999 99999
Q ss_pred CCCCCChHHHH
Q 042799 223 NHSGLTAIDLL 233 (449)
Q Consensus 223 n~~g~T~l~~A 233 (449)
|..|.||.+-+
T Consensus 141 ~~~g~t~~~~~ 151 (156)
T 1bi7_B 141 NHARIDAAEGP 151 (156)
T ss_dssp -----------
T ss_pred CcCcCcccccC
Confidence 99999997654
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=1.4e-25 Score=186.63 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=118.8
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCC-CCcHhHHH
Q 042799 33 LTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPE-AKTPLHCA 111 (449)
Q Consensus 33 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~-g~tpLh~A 111 (449)
+..|.||||.|+..|+.+++++|+++++++ +..|..|+||||+|+. |+.+++++|+++|+++ +.+|.. |.||||+|
T Consensus 9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A 85 (136)
T 1d9s_A 9 GGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPVHDA 85 (136)
T ss_dssp CCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHHHHH
T ss_pred CCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHHHHH
Confidence 345999999999999999999999999987 8889999999999999 9999999999999998 888988 99999999
Q ss_pred HHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHH
Q 042799 112 AIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWI 161 (449)
Q Consensus 112 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~ 161 (449)
+..|+.+++++|++.+++ ++.+|..|+||||+|+.+++.+++++|+++|
T Consensus 86 ~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G 134 (136)
T 1d9s_A 86 AREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134 (136)
T ss_dssp HHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 999999999999999887 8999999999999999999999999999984
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=1e-25 Score=187.47 Aligned_cols=132 Identities=14% Similarity=0.196 Sum_probs=125.4
Q ss_pred CCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccC-C
Q 042799 60 PDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQ-H 138 (449)
Q Consensus 60 ~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-g 138 (449)
+++ +..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+. |+.+++++|++++.+ ++.+|.. |
T Consensus 3 ~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g 78 (136)
T 1d9s_A 3 PGI-HMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATL 78 (136)
T ss_dssp CCC-SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTT
T ss_pred CCc-cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCC
Confidence 444 788999999999999999999999999999988 8899999999999999 999999999999887 8899999 9
Q ss_pred CcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCcc
Q 042799 139 YTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQA 211 (449)
Q Consensus 139 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga 211 (449)
+||||+|+..|+.+++++|+++ +.+++.+|..|+|||| +|+..++ .+++++|+++|+
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~d~~g~tpl~---~A~~~~~-------~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRA------GARLDVCDAWGRLPVD---LAEEQGH-------RDIARYLHAATG 135 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHT------CCCCCCCSSSSSCHHH---HHHHHTC-------HHHHHHHHHHHC
T ss_pred CCHHHHHHHcCCHHHHHHHHHc------CCCCCccCCCCCCHHH---HHHHcCC-------HHHHHHHHHcCC
Confidence 9999999999999999999987 7889999999999999 9999999 999999999997
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=7.7e-25 Score=182.10 Aligned_cols=123 Identities=24% Similarity=0.317 Sum_probs=115.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHh
Q 042799 35 SAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIK 114 (449)
Q Consensus 35 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 114 (449)
.+.||||.|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFI 90 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred cccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHc
Confidence 3899999999999999999999999887 888999999999999999999999999999988 88899999999999999
Q ss_pred CcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHH
Q 042799 115 GRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDW 160 (449)
Q Consensus 115 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 160 (449)
|+.+++++|++++.+ ++..|.+|+||||+|+..|+.+++++|+++
T Consensus 91 ~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 91 GHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred CCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 999999999999877 888999999999999999999999999875
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=2.1e-24 Score=176.29 Aligned_cols=123 Identities=30% Similarity=0.508 Sum_probs=109.7
Q ss_pred CChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhC
Q 042799 36 AGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKG 115 (449)
Q Consensus 36 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 115 (449)
|+||||.|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcC
Confidence 889999999999999999999998887 778888999999999999999999999998887 788888999999999999
Q ss_pred cHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHH
Q 042799 116 RSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWI 161 (449)
Q Consensus 116 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~ 161 (449)
+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 80 ~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 124 (126)
T 1n0r_A 80 HLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124 (126)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 99999999998876 7888889999999999999999999998873
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=3.4e-24 Score=178.16 Aligned_cols=128 Identities=21% Similarity=0.238 Sum_probs=118.7
Q ss_pred ccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHH
Q 042799 65 EVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHL 144 (449)
Q Consensus 65 ~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 144 (449)
.....|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~ 86 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHL 86 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHH
T ss_pred cccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHH
Confidence 34566889999999999999999999999998 88999999999999999999999999999877 88999999999999
Q ss_pred HHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCc
Q 042799 145 AIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQ 210 (449)
Q Consensus 145 A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~g 210 (449)
|+..|+.+++++|+++ +.+++.+|.+|+|||| +|+..++ .+++++|+++|
T Consensus 87 A~~~~~~~~v~~Ll~~------g~~~~~~~~~g~tpl~---~A~~~~~-------~~~~~~Ll~~G 136 (136)
T 2jab_A 87 AAFIGHLEIAEVLLKH------GADVNAQDKFGKTAFD---ISIGNGN-------EDLAEILQKLN 136 (136)
T ss_dssp HHHHTCHHHHHHHHHT------TCCTTCCCTTSCCHHH---HHHHTTC-------HHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHc------CCCCcCcCCCCCCHHH---HHHHCCC-------HHHHHHHHHcC
Confidence 9999999999999987 7889999999999999 9999999 99999999876
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=8.9e-24 Score=172.56 Aligned_cols=125 Identities=30% Similarity=0.481 Sum_probs=119.7
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHh
Q 042799 69 DGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKS 148 (449)
Q Consensus 69 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 148 (449)
+|+||||+|+..|+.+++++|++++.++ +.+|..|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHc
Confidence 5899999999999999999999999988 88899999999999999999999999999877 888999999999999999
Q ss_pred CCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCcc
Q 042799 149 SQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQA 211 (449)
Q Consensus 149 ~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga 211 (449)
|+.+++++|+++ +.+++.+|..|+|||| +|+..++ .+++++|+++|+
T Consensus 79 ~~~~~~~~Ll~~------g~~~~~~~~~g~t~l~---~A~~~~~-------~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 79 GHLEVVKLLLEA------GADVNAKDKNGRTPLH---LAARNGH-------LEVVKLLLEAGA 125 (126)
T ss_dssp TCHHHHHHHHHT------TCCTTCCCTTSCCHHH---HHHHTTC-------HHHHHHHHHHTC
T ss_pred ChHHHHHHHHHc------CCCCcccCCCCCCHHH---HHHHcCc-------HHHHHHHHHcCC
Confidence 999999999987 7788999999999999 9999999 999999999997
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=6.5e-24 Score=176.65 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=92.6
Q ss_pred ccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHH
Q 042799 65 EVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHL 144 (449)
Q Consensus 65 ~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 144 (449)
.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHH
Confidence 45667777777777777777777777777766 66777777777777777777777777777665 66777777777777
Q ss_pred HHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCc
Q 042799 145 AIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQ 210 (449)
Q Consensus 145 A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~g 210 (449)
|+..|+.+++++|+++ +.+++.+|.+|+|||| +|+..+. .+++++|.+.+
T Consensus 83 A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~tpl~---~A~~~~~-------~~~l~~l~~~~ 132 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSY------GASRNAVNIFGLRPVD---YTDDESM-------KSLLLLPEKNE 132 (137)
T ss_dssp HHHTTCHHHHHHHHHT------TCCTTCCCTTSCCGGG---GCCCHHH-------HHHHSCC----
T ss_pred HHHcCCHHHHHHHHHc------CCCCCCCCCCCCCHHH---HHhhccH-------HHHHhhccccc
Confidence 7777777777777765 6667777778888888 7777766 67666665544
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.90 E-value=2.1e-23 Score=182.61 Aligned_cols=138 Identities=20% Similarity=0.257 Sum_probs=124.4
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccC-CCCCcHhHHHHH
Q 042799 35 SAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQG-PEAKTPLHCAAI 113 (449)
Q Consensus 35 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpLh~A~~ 113 (449)
.|.||||.|+..|+.++++.|++ +.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+| .+|.||||+|+.
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHh
Confidence 48999999999999999999999 7776 889999999999999999999999999999998 6666 899999999999
Q ss_pred hCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccch
Q 042799 114 KGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQ 193 (449)
Q Consensus 114 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~ 193 (449)
.|+.+++++|++++.+ ++.+|.+|+||||+|++.++. ..+.++|+ .|+..+.
T Consensus 120 ~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~-----------------------~~~~~~l~---~a~~~~~- 171 (183)
T 3deo_A 120 YVRPEVVEALVELGAD-IEVEDERGLTALELAREILKT-----------------------TPKGNPMQ---FGRRIGL- 171 (183)
T ss_dssp TTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT-----------------------CCCCSHHH---HHHHHHH-
T ss_pred cCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC-----------------------cccccHHH---HHHHcCH-
Confidence 9999999999999877 889999999999999864221 34678999 9999998
Q ss_pred hhhhhHHHHHHHHhhC
Q 042799 194 LKTWIHWQVIELLLGH 209 (449)
Q Consensus 194 ~~~~~~~~iv~~Ll~~ 209 (449)
.+++++|.++
T Consensus 172 ------~~i~~~L~~~ 181 (183)
T 3deo_A 172 ------EKVINVLEGQ 181 (183)
T ss_dssp ------HHHHHHHHTC
T ss_pred ------HHHHHHHHHh
Confidence 9999999865
No 93
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=197.94 Aligned_cols=136 Identities=16% Similarity=0.114 Sum_probs=104.8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhhCCCcccc------cCCCCCcHHHHHHHc---CcHHHHHHHHHcCcccccccCCCCC
Q 042799 35 SAGNPLHVASAYGHIDFVKEIINLRPDMAQE------VNQDGFSPMHMASSI---GHTEVVRELLKVDRKLCQLQGPEAK 105 (449)
Q Consensus 35 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~------~d~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~d~~g~ 105 (449)
.+.++||.|+..|+.+.++.|++.++++ +. .|..|+||||+|+.. |+.+++++|+++|+++ +.+|.+|.
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~ 227 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGN 227 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCC
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcc-cccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCC
Confidence 3677888888888888888888888776 43 577788888888876 7788888888888877 77788888
Q ss_pred cHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchh
Q 042799 106 TPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYD 185 (449)
Q Consensus 106 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~ 185 (449)
||||+|+..|+.+++++|++.+++ ++.+|.+|+||||+|+..|+.+++++|++.+.+ .|.||||.++
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------------~g~tpLh~A~ 294 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG------------TFAFPLHVDY 294 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------------TTSSCCC---
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------------CCCChhHHHH
Confidence 888888888888888888887766 777888888888888888888888888887543 3678887654
No 94
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.89 E-value=8e-23 Score=193.30 Aligned_cols=140 Identities=17% Similarity=0.145 Sum_probs=121.2
Q ss_pred HHHHHHHHhCCHHHHHHHHhcCccccccc----cCCCCChHHHHHHHc---CCHHHHHHHHhhCCCcccccCCCCCcHHH
Q 042799 3 RKLFEATQAGNVQSLHQLLGENPLILHTS----ALTSAGNPLHVASAY---GHIDFVKEIINLRPDMAQEVNQDGFSPMH 75 (449)
Q Consensus 3 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~----~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh 75 (449)
++||.|++.|+.+.++.|++.++++.... .+..|.||||+|+.. |+.+++++|+++|+++ +.+|..|+||||
T Consensus 153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~TpLh 231 (301)
T 2b0o_E 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALH 231 (301)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCHHH
T ss_pred HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCHHH
Confidence 67999999999999999999998865421 234599999999997 8999999999999997 889999999999
Q ss_pred HHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCH
Q 042799 76 MASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQY 151 (449)
Q Consensus 76 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~ 151 (449)
+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.+++ .|.||||+|++.|+.
T Consensus 232 ~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 232 YAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC--------
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCCc
Confidence 999999999999999999998 89999999999999999999999999998754 689999999998864
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=1.9e-23 Score=191.75 Aligned_cols=140 Identities=20% Similarity=0.252 Sum_probs=126.6
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccC-CCCCcHhHHHHH
Q 042799 35 SAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQG-PEAKTPLHCAAI 113 (449)
Q Consensus 35 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpLh~A~~ 113 (449)
.|.||||.|+..|+.++++.|++ +.++ +.+|..|+||||+|+..|+.+++++|+++|+++ +.+| ..|.||||+|+.
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~ 120 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAG 120 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHH
Confidence 38999999999999999999999 8776 889999999999999999999999999999998 6666 889999999999
Q ss_pred hCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccch
Q 042799 114 KGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQ 193 (449)
Q Consensus 114 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~ 193 (449)
.|+.+++++|++++++ ++.+|..|+||||+|+..+ .+..+.|||| +|+..++
T Consensus 121 ~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~-----------------------~~~~~~~~l~---~a~~~g~- 172 (244)
T 3ui2_A 121 YVRPEVVEALVELGAD-IEVEDERGLTALELAREIL-----------------------KTTPKGNPMQ---FGRRIGL- 172 (244)
T ss_dssp TTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHH-----------------------TTCCCSSHHH---HHHHHHH-
T ss_pred cCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHH-----------------------hccCCCCHHH---HHHHcCh-
Confidence 9999999999999887 8899999999999998521 1256899999 9999999
Q ss_pred hhhhhHHHHHHHHhhCcc
Q 042799 194 LKTWIHWQVIELLLGHQA 211 (449)
Q Consensus 194 ~~~~~~~~iv~~Ll~~ga 211 (449)
.+++++|++++.
T Consensus 173 ------~~iv~~L~~~~~ 184 (244)
T 3ui2_A 173 ------EKVINVLEGQVF 184 (244)
T ss_dssp ------HHHHHHHHHHHE
T ss_pred ------HHHHHHHHHhcc
Confidence 999999998765
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=3.7e-23 Score=189.82 Aligned_cols=138 Identities=17% Similarity=0.242 Sum_probs=123.2
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccC-CCCCcHHHHHHHc
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVN-QDGFSPMHMASSI 80 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~Aa~~ 80 (449)
+||||.|++.|+.++++.|++ +.+++. .+..|.||||+|+..|+.+++++|+++|+++ +..| ..|+||||+|+..
T Consensus 46 ~t~L~~A~~~g~~~~v~~Ll~-~~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~~ 121 (244)
T 3ui2_A 46 ETPWWTAARKADEQALSQLLE-DRDVDA--VDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGY 121 (244)
T ss_dssp HHHHHHHHTTTCHHHHHHTTT-TCCTTC--BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHc-CCCCCC--cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHc
Confidence 489999999999999999999 765543 3355999999999999999999999999998 6666 8899999999999
Q ss_pred CcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHH
Q 042799 81 GHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDW 160 (449)
Q Consensus 81 g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 160 (449)
|+.+++++|+++|+++ +.+|..|.||||+|+..++ +..+.||||+|+..|+.+++++|++.
T Consensus 122 g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 122 VRPEVVEALVELGADI-EVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 9999999999999998 8999999999999986332 25679999999999999999999987
Q ss_pred HH
Q 042799 161 IR 162 (449)
Q Consensus 161 ~~ 162 (449)
+.
T Consensus 183 ~~ 184 (244)
T 3ui2_A 183 VF 184 (244)
T ss_dssp HE
T ss_pred cc
Confidence 43
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=2.2e-23 Score=170.04 Aligned_cols=115 Identities=21% Similarity=0.235 Sum_probs=101.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHh
Q 042799 35 SAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIK 114 (449)
Q Consensus 35 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 114 (449)
.|.||||.|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYE 83 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHc
Confidence 4889999999999999999999999887 888999999999999999999999999999888 88899999999999999
Q ss_pred CcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHh
Q 042799 115 GRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYG 152 (449)
Q Consensus 115 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~ 152 (449)
|+.+++++|++++++ ++.+|.+|+||||+|...+..+
T Consensus 84 ~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~ 120 (123)
T 3aaa_C 84 GHVSCVKLLLSKGAD-KTVKGPDGLTAFEATDNQAIKA 120 (123)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCCHHHHH
T ss_pred CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHhCCHHHHH
Confidence 999999999999877 8889999999999995444333
No 98
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=5.7e-23 Score=179.88 Aligned_cols=135 Identities=17% Similarity=0.252 Sum_probs=120.9
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccC-CCCCcHHHHHHHc
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVN-QDGFSPMHMASSI 80 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~Aa~~ 80 (449)
+||||.|++.|+.+.++.|++ +.+++. .+..|.||||+|+..|+.+++++|+++|+++ +..| ..|+||||+|+..
T Consensus 45 ~t~L~~A~~~g~~~~v~~Ll~-~~~~~~--~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~~~ 120 (183)
T 3deo_A 45 ETPWWTAARKADEQALSQLLE-DRDVDA--VDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGY 120 (183)
T ss_dssp HHHHHHHHHTTCHHHHHHHTT-TSCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHh-cCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHhc
Confidence 489999999999999999999 665543 3356999999999999999999999999998 6666 8999999999999
Q ss_pred CcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHH
Q 042799 81 GHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVD 159 (449)
Q Consensus 81 g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~ 159 (449)
|+.+++++|+++|+++ +.+|.+|.||||+|++.++. ..+.++|++|+..|+.+++++|.+
T Consensus 121 ~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~~ 180 (183)
T 3deo_A 121 VRPEVVEALVELGADI-EVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEG 180 (183)
T ss_dssp TCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHHH
Confidence 9999999999999998 89999999999999975533 356799999999999999999865
No 99
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=1.8e-23 Score=173.92 Aligned_cols=130 Identities=20% Similarity=0.289 Sum_probs=117.2
Q ss_pred ccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCC
Q 042799 99 LQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGN 178 (449)
Q Consensus 99 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~ 178 (449)
.+|.+|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|+++ +.+++.+|..|+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~------g~~~~~~~~~g~ 77 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQH------KALVNTTGYQND 77 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCGGGC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCcccCcCCCCC
Confidence 5789999999999999999999999999877 889999999999999999999999999987 788999999999
Q ss_pred CcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcCCC
Q 042799 179 TKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGAT 255 (449)
Q Consensus 179 T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~ 255 (449)
|||| +|+..++ .+++++|+++|+ +++.+|..|.||+|+| ...+..+++++|.+.+..
T Consensus 78 t~L~---~A~~~~~-------~~~v~~Ll~~ga------~~~~~~~~g~tpl~~A----~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 78 SPLH---DAAKNGH-------VDIVKLLLSYGA------SRNAVNIFGLRPVDYT----DDESMKSLLLLPEKNESS 134 (137)
T ss_dssp CHHH---HHHHTTC-------HHHHHHHHHTTC------CTTCCCTTSCCGGGGC----CCHHHHHHHSCC------
T ss_pred CHHH---HHHHcCC-------HHHHHHHHHcCC------CCCCCCCCCCCHHHHH----hhccHHHHHhhccccccC
Confidence 9999 9999999 999999999998 8999999999999999 778888888877665543
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.88 E-value=2.6e-23 Score=187.90 Aligned_cols=139 Identities=17% Similarity=0.126 Sum_probs=113.0
Q ss_pred ccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHH
Q 042799 65 EVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHL 144 (449)
Q Consensus 65 ~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 144 (449)
..|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.++..++.+|..|+||||+
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA 146 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence 45677899999999999999999999999888 88899999999999999999999999998444488999999999999
Q ss_pred HHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCC
Q 042799 145 AIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINH 224 (449)
Q Consensus 145 A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~ 224 (449)
|+..|+.+++++|+++ +++++.+|.+|+|||| +|+..+. .++++.|++.|+ +.+..|.
T Consensus 147 A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~---~A~~~~~-------~~~l~~l~~~~~------~~~~~~~ 204 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAK------GARTDLRNIEKKLAFD---MATNAAC-------ASLLKKKQGTDA------VRTLSNA 204 (222)
T ss_dssp HHHHTCHHHHHHHHHH------TCCSCCCCTTSCCHHH---HCCSHHH-------HHHHC--------------------
T ss_pred HHHcCCHHHHHHHHHc------CCCCccccCCCCCHHH---HhcchhH-------HHHHHHHhccch------hhhccch
Confidence 9999999999999998 7888999999999999 9999998 999999999988 5555554
Q ss_pred CC
Q 042799 225 SG 226 (449)
Q Consensus 225 ~g 226 (449)
+|
T Consensus 205 ~~ 206 (222)
T 3ehr_A 205 ED 206 (222)
T ss_dssp --
T ss_pred hh
Confidence 43
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.88 E-value=3.9e-23 Score=186.68 Aligned_cols=125 Identities=23% Similarity=0.319 Sum_probs=113.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHc-CcccccccCCCCCcHhHHHHH
Q 042799 35 SAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKV-DRKLCQLQGPEAKTPLHCAAI 113 (449)
Q Consensus 35 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~ 113 (449)
.|.||||+|+..|+.+++++|++.|.++ +..|..|+||||+|+..|+.+++++|+++ |+++ +.+|..|.||||+|+.
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAW 149 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHH
T ss_pred ccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHH
Confidence 3789999999999999999999999987 88899999999999999999999999999 8887 8999999999999999
Q ss_pred hCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHH
Q 042799 114 KGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIR 162 (449)
Q Consensus 114 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~ 162 (449)
.|+.+++++|++++.+ ++.+|.+|+||||+|+..++.++++.|++.+.
T Consensus 150 ~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 150 KGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp HTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred cCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence 9999999999999887 89999999999999999999999999998743
No 102
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=1.9e-22 Score=164.43 Aligned_cols=115 Identities=15% Similarity=0.150 Sum_probs=105.6
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHH
Q 042799 67 NQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAI 146 (449)
Q Consensus 67 d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 146 (449)
+..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHH
Confidence 567889999999999999999999999988 88999999999999999999999999999877 8999999999999999
Q ss_pred HhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcccc
Q 042799 147 KSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNYKE 192 (449)
Q Consensus 147 ~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~~~ 192 (449)
..|+.+++++|+++ +.+++.+|.+|+|||| +|...+.
T Consensus 82 ~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~---~A~~~~~ 118 (123)
T 3aaa_C 82 YEGHVSCVKLLLSK------GADKTVKGPDGLTAFE---ATDNQAI 118 (123)
T ss_dssp HHTCHHHHHHHHHT------TCCTTCCCTTSCCHHH---HCCCHHH
T ss_pred HcCCHHHHHHHHHc------CCCCCCcCCCCCCHHH---HhCCHHH
Confidence 99999999999997 7889999999999999 8865544
No 103
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.86 E-value=1.1e-21 Score=189.82 Aligned_cols=146 Identities=16% Similarity=0.207 Sum_probs=117.6
Q ss_pred CChHHHHHHHc-CCHHHHHHHHhhCCCcccccC--CCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHH
Q 042799 36 AGNPLHVASAY-GHIDFVKEIINLRPDMAQEVN--QDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAA 112 (449)
Q Consensus 36 g~t~Lh~Aa~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~ 112 (449)
+.|+||.|+.. |+.++++.|+++|+++ +..| ..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~ 276 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHAT 276 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence 56899999999 9999999999999998 7777 89999999999999999999999999998 899999999999999
Q ss_pred HhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCcccchhhhhcc
Q 042799 113 IKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQSYDLSSNY 190 (449)
Q Consensus 113 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh~~~~A~~~ 190 (449)
..|+.+++++|++++++ ++..|.+|+||||+|+..|+.+++++|++.+.. .......+..+.|+++ ++...
T Consensus 277 ~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~---~~~~~~~~~~~~t~l~---i~~~~ 347 (368)
T 3jue_A 277 ILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMR---EAEAAQGQAGDETYLD---IFRDF 347 (368)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------------
T ss_pred HcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---cccccccCCCCCCHHH---HHHHH
Confidence 99999999999999887 899999999999999999999999999987533 3444566778889988 55544
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.86 E-value=7.8e-22 Score=184.38 Aligned_cols=126 Identities=14% Similarity=0.105 Sum_probs=112.5
Q ss_pred CChHHHHHHHcCCHHHHHHHHhhCCCcc-----cccCCCCCcHHHHHHHc---CcHHHHHHHHHcCcccccccCCCCCcH
Q 042799 36 AGNPLHVASAYGHIDFVKEIINLRPDMA-----QEVNQDGFSPMHMASSI---GHTEVVRELLKVDRKLCQLQGPEAKTP 107 (449)
Q Consensus 36 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~-----~~~d~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~d~~g~tp 107 (449)
..++|+.|+..|+.+.++.+++.|+++. +..|..|+||||+|+.. |+.+++++|+++|+++ +.+|.+|.||
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~Tp 208 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTA 208 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCH
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCH
Confidence 6789999999999999999999988752 44488899999999998 8899999999999988 8889999999
Q ss_pred hHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHh
Q 042799 108 LHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIRE 163 (449)
Q Consensus 108 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~ 163 (449)
||+|+..|+.+++++|++++++ ++.+|.+|+||||+|+..|+.+++++|+++++.
T Consensus 209 Lh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 209 LHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999998887 888999999999999999999999999998654
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.85 E-value=3.8e-21 Score=186.13 Aligned_cols=145 Identities=18% Similarity=0.193 Sum_probs=116.5
Q ss_pred CHHHHHHHHh-CCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 042799 2 DRKLFEATQA-GNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSI 80 (449)
Q Consensus 2 dt~L~~Aa~~-g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~ 80 (449)
+|+||.|++. |+.++++.|++.+.+++....+..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..
T Consensus 200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~~~ 278 (368)
T 3jue_A 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATIL 278 (368)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred CcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 3799999999 999999999999998865543356999999999999999999999999998 89999999999999999
Q ss_pred CcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCc--ccccccCCCcHHHHHHHh
Q 042799 81 GHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPEC--VEDVTIQHYTALHLAIKS 148 (449)
Q Consensus 81 g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~--~~~~d~~g~t~Lh~A~~~ 148 (449)
|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+..+... ....+..+.|+++++...
T Consensus 279 g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 279 GHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred CcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 9999999999999998 899999999999999999999999999876432 223456677787776543
No 106
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=7.4e-21 Score=146.83 Aligned_cols=91 Identities=33% Similarity=0.572 Sum_probs=76.1
Q ss_pred CChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhC
Q 042799 36 AGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKG 115 (449)
Q Consensus 36 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 115 (449)
|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcC
Confidence 788888888888888888888888876 778888888888888888888888888888887 778888888888888888
Q ss_pred cHHHHHHHHhhCC
Q 042799 116 RSHAVAEMLSACP 128 (449)
Q Consensus 116 ~~~~v~~Ll~~~~ 128 (449)
+.+++++|++.++
T Consensus 80 ~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 80 HLEVVKLLLEAGA 92 (93)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCC
Confidence 8888888888765
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.84 E-value=9.5e-21 Score=191.84 Aligned_cols=125 Identities=18% Similarity=0.172 Sum_probs=87.0
Q ss_pred HHHHHHHHhCCHHHHHHHHhcCcccccc----ccCCCCChHHHHHHH---cCCHHHHHHHHhhCCCcccccCCCCCcHHH
Q 042799 3 RKLFEATQAGNVQSLHQLLGENPLILHT----SALTSAGNPLHVASA---YGHIDFVKEIINLRPDMAQEVNQDGFSPMH 75 (449)
Q Consensus 3 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~----~~~~~g~t~Lh~Aa~---~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh 75 (449)
+.||.|++.|+.+.++.|++.|++++.. ..+..|.||||+||. .|+.+++++|+++|+++ +.+|..|+||||
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~TpLh 212 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALH 212 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCCHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCcHHH
Confidence 4577777777777777777777665432 112347777777755 67777777777777776 667777777777
Q ss_pred HHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCC
Q 042799 76 MASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPE 129 (449)
Q Consensus 76 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~ 129 (449)
+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++++++
T Consensus 213 ~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 265 (497)
T 3lvq_E 213 YAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG 265 (497)
T ss_dssp HHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 777777777777777777776 66777777777777777777777777777665
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.84 E-value=1e-20 Score=191.63 Aligned_cols=132 Identities=17% Similarity=0.113 Sum_probs=116.7
Q ss_pred CChHHHHHHHcCCHHHHHHHHhhCCCccccc------CCCCCcHHHHHHH---cCcHHHHHHHHHcCcccccccCCCCCc
Q 042799 36 AGNPLHVASAYGHIDFVKEIINLRPDMAQEV------NQDGFSPMHMASS---IGHTEVVRELLKVDRKLCQLQGPEAKT 106 (449)
Q Consensus 36 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~------d~~g~tpLh~Aa~---~g~~~iv~~Ll~~~~~~~~~~d~~g~t 106 (449)
..+.||.|+..|+.+.++.|+++|+++ +.. |..|+||||+||. .|+.+++++|+++|+++ +.+|.+|.|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~T 209 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT 209 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCC
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCc
Confidence 457899999999999999999999987 555 8899999999976 89999999999999998 999999999
Q ss_pred HhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCCCccc
Q 042799 107 PLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTKIQ 182 (449)
Q Consensus 107 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~Lh 182 (449)
|||+|+..|+.+++++|++++++ ++.+|.+|+||||+|+..|+.+++++|+++ +++++. +|+|
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~------ga~~~~------~~~h 272 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQA------QAGTFA------FPLH 272 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHTCCC-CSCCCTTCCCHHHHHHHTTCHHHHHHHHHT------CC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh------CCCCCC------Ccce
Confidence 99999999999999999999988 999999999999999999999999999998 555554 5777
No 109
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=1.6e-20 Score=175.38 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=115.1
Q ss_pred CCcHhHHHHHhCcHHHHHHHHhhCCCc-----ccccccCCCcHHHHHHHh---CCHhHHHHHHHHHHhhccccccccccC
Q 042799 104 AKTPLHCAAIKGRSHAVAEMLSACPEC-----VEDVTIQHYTALHLAIKS---SQYGVIAIIVDWIREMKKEHIFNMRDE 175 (449)
Q Consensus 104 g~tpLh~A~~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~~~~~~n~~d~ 175 (449)
..++|+.|+..|+.+.++.+++.+.+. ++..|..|+||||+|+.. |+.+++++|+++ ++++|.+|.
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~------ga~in~~d~ 203 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN------SGNLDKQTG 203 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH------CSCTTCCCT
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC------CCCccccCC
Confidence 457899999999999999999998774 333478899999999999 899999999998 788999999
Q ss_pred CCCCcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChHHHHhhCCCCcChhHHHHHHHHcCCC
Q 042799 176 QGNTKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAIDLLLIFPSEAGDREIEEILRSAGAT 255 (449)
Q Consensus 176 ~G~T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l~~A~~~~~~~~~~~i~~~Ll~~ga~ 255 (449)
+|+|||| +|+..++ .+++++|+++|+ +++.+|..|.||||+| ...++.+++++|+++|++
T Consensus 204 ~g~TpLh---~A~~~g~-------~~~v~~Ll~~ga------d~~~~d~~g~tpL~~A----~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 204 KGSTALH---YCCLTDN-------AECLKLLLRGKA------SIEIANESGETPLDIA----KRLKHEHCEELLTQALSG 263 (278)
T ss_dssp TCCCHHH---HHHHTTC-------HHHHHHHHHTTC------CTTCCCTTSCCHHHHH----HHTTCHHHHHHHHHHHTT
T ss_pred CCCCHHH---HHHHcCC-------HHHHHHHHHcCC------CCCCccCCCCCHHHHH----HHcCCHHHHHHHHHcCCC
Confidence 9999999 9999999 999999999998 8999999999999999 677899999999999986
Q ss_pred CC
Q 042799 256 GM 257 (449)
Q Consensus 256 ~~ 257 (449)
..
T Consensus 264 ~~ 265 (278)
T 1dcq_A 264 RF 265 (278)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.82 E-value=3.7e-20 Score=142.91 Aligned_cols=90 Identities=31% Similarity=0.502 Sum_probs=85.5
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHh
Q 042799 69 DGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKS 148 (449)
Q Consensus 69 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 148 (449)
+|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.+++ ++.+|.+|+||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHc
Confidence 4899999999999999999999999998 89999999999999999999999999999887 889999999999999999
Q ss_pred CCHhHHHHHHHH
Q 042799 149 SQYGVIAIIVDW 160 (449)
Q Consensus 149 ~~~~~v~~Ll~~ 160 (449)
|+.+++++|+++
T Consensus 79 ~~~~~~~~Ll~~ 90 (93)
T 1n0q_A 79 GHLEVVKLLLEA 90 (93)
T ss_dssp TCHHHHHHHHHT
T ss_pred CCHHHHHHHHHc
Confidence 999999999987
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.81 E-value=2.8e-20 Score=149.50 Aligned_cols=106 Identities=26% Similarity=0.371 Sum_probs=51.1
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHH
Q 042799 67 NQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAI 146 (449)
Q Consensus 67 d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 146 (449)
|.+|+||||+|+..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHLAK 83 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHH
Confidence 444445555555555555555555444444 44444455555555555555555555544443 4444444555555555
Q ss_pred HhCCHhHHHHHHHHHHhhccccccccccCCCCCc
Q 042799 147 KSSQYGVIAIIVDWIREMKKEHIFNMRDEQGNTK 180 (449)
Q Consensus 147 ~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~T~ 180 (449)
..++.+++++|+++ ++++|.++..|.||
T Consensus 84 ~~~~~~~~~~Ll~~------ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 84 KNGHHEIVKLLDAK------GADVNARSWGSSHH 111 (115)
T ss_dssp TTTCHHHHHHHHTT------SSSHHHHSCCCC--
T ss_pred HCCCHHHHHHHHHc------CCCCCcCCcccccc
Confidence 55555555555443 44444455444444
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.79 E-value=1.3e-19 Score=145.57 Aligned_cols=109 Identities=27% Similarity=0.357 Sum_probs=101.2
Q ss_pred ccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHHHHhhccccccccccCCCC
Q 042799 99 LQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDWIREMKKEHIFNMRDEQGN 178 (449)
Q Consensus 99 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~n~~d~~G~ 178 (449)
.+|.+|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++. +.+++.+|.+|+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~------g~~~~~~d~~g~ 76 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK------GADVNARSKDGN 76 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTT------TCCTTCCCTTCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc------CCCCcccCCCCC
Confidence 5789999999999999999999999999887 888999999999999999999999999987 788999999999
Q ss_pred CcccchhhhhcccchhhhhhHHHHHHHHhhCccccccCccccccCCCCCChH
Q 042799 179 TKIQSYDLSSNYKEQLKTWIHWQVIELLLGHQANASQGLEVNAINHSGLTAI 230 (449)
Q Consensus 179 T~Lh~~~~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~n~~g~T~l 230 (449)
|||| +|+..++ .+++++|+++|+ ++|..+..|.||-
T Consensus 77 tpl~---~A~~~~~-------~~~~~~Ll~~ga------~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 77 TPEH---LAKKNGH-------HEIVKLLDAKGA------DVNARSWGSSHHH 112 (115)
T ss_dssp CTTH---HHHTTTC-------HHHHHHHHTTSS------SHHHHSCCCC---
T ss_pred CHHH---HHHHCCC-------HHHHHHHHHcCC------CCCcCCccccccc
Confidence 9999 9999999 999999999999 9999999999884
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.74 E-value=8.9e-18 Score=133.79 Aligned_cols=87 Identities=25% Similarity=0.358 Sum_probs=65.9
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHh
Q 042799 35 SAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIK 114 (449)
Q Consensus 35 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 114 (449)
+|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus 23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~ 100 (110)
T 2zgd_A 23 DLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDISIDN 100 (110)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHHHHHc
Confidence 4777777777777777777777777766 666777777777777777777777777777776 66777777777777777
Q ss_pred CcHHHHHHH
Q 042799 115 GRSHAVAEM 123 (449)
Q Consensus 115 g~~~~v~~L 123 (449)
|+.+++++|
T Consensus 101 ~~~~~~~~L 109 (110)
T 2zgd_A 101 GNEDLAEIL 109 (110)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 777777665
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.72 E-value=1.4e-17 Score=132.63 Aligned_cols=93 Identities=23% Similarity=0.271 Sum_probs=84.7
Q ss_pred ccccCCCCCcHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHHHHHHHhhCCCcccccccCCCcHH
Q 042799 63 AQEVNQDGFSPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHAVAEMLSACPECVEDVTIQHYTAL 142 (449)
Q Consensus 63 ~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 142 (449)
....|.+|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++++.+ ++.+|..|+|||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl 94 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAF 94 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcHH
Confidence 3567889999999999999999999999999988 88999999999999999999999999999877 889999999999
Q ss_pred HHHHHhCCHhHHHHH
Q 042799 143 HLAIKSSQYGVIAII 157 (449)
Q Consensus 143 h~A~~~~~~~~v~~L 157 (449)
|+|+..|+.+++++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 999999999999986
No 115
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=58.85 E-value=21 Score=22.02 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=6.0
Q ss_pred HHhhhhHhHhhhcc
Q 042799 427 YGFRLQRKRRRSER 440 (449)
Q Consensus 427 ~~~~~~~~~~~~~~ 440 (449)
..+-++.+||+..+
T Consensus 29 l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 29 VVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHHHHCSCC
T ss_pred HHHHhheehhhhhc
Confidence 33444444444433
No 116
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=52.96 E-value=22 Score=21.87 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=5.0
Q ss_pred HhhhhHhHhhhc
Q 042799 428 GFRLQRKRRRSE 439 (449)
Q Consensus 428 ~~~~~~~~~~~~ 439 (449)
..+++++||+..
T Consensus 29 ~~~~~~RRRr~~ 40 (44)
T 2l2t_A 29 TFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHTTCSS
T ss_pred HHHHHhhhhhhh
Confidence 344444444433
No 117
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=51.07 E-value=99 Score=25.51 Aligned_cols=131 Identities=9% Similarity=0.025 Sum_probs=84.1
Q ss_pred CHHHHHHHHhCCHHHHHHHHhcCccccccccCCCCChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 042799 2 DRKLFEATQAGNVQSLHQLLGENPLILHTSALTSAGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGFSPMHMASSIG 81 (449)
Q Consensus 2 dt~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 81 (449)
|+.+-.|...|+++....+.+.-.+ .....+.=..|...|+.++++....+-.+. . ..+.+....|
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l~~------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~------~--~L~~Ly~~tg 74 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKLND------SITWERLIQEALAQGNASLAEMIYQTQHSF------D--KLSFLYLVTG 74 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHCC------HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH------H--HHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhCC------HHHHHHHHHHHHHcCChHHHHHHHHHhCCH------H--HHHHHHHHhC
Confidence 4677899999999999888764210 011344445677899999999998876554 1 2344455567
Q ss_pred cHHHHHHHHHcCcccccccCCCCCcHhHHHHHhCcHHH-HHHHHhhCCCcccccccCCCcHHHHHHHhCCHhHHHHHHHH
Q 042799 82 HTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIKGRSHA-VAEMLSACPECVEDVTIQHYTALHLAIKSSQYGVIAIIVDW 160 (449)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~-v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 160 (449)
+.+-++.+-+.- ....+...+.+.+-..|+.+- ++.|.+.+-- .+ +...|-.+|..++.+.+++.
T Consensus 75 ~~e~L~kla~iA-----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~-~e--------A~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 75 DVNKLSKMQNIA-----QTREDFGSMLLNTFYNNSTKERSSIFAEGGSL-PL--------AYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp CHHHHHHHHHHH-----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCH-HH--------HHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCCh-HH--------HHHHHHHcCcHHHHHHHHHH
Confidence 776666554321 112233567788878888754 4555444321 21 56777888888888888876
No 118
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=44.31 E-value=1.3e+02 Score=24.72 Aligned_cols=106 Identities=10% Similarity=0.111 Sum_probs=60.9
Q ss_pred CChHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCC-cHHHHHHHcCcHHHHHHHHHcCcccccccCCCCCcHhHHHHHh
Q 042799 36 AGNPLHVASAYGHIDFVKEIINLRPDMAQEVNQDGF-SPMHMASSIGHTEVVRELLKVDRKLCQLQGPEAKTPLHCAAIK 114 (449)
Q Consensus 36 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 114 (449)
-++=+-.|...|+++....+.+...+ ..-| .-=..|...|+.++++.-..+-.+. ...+.+....
T Consensus 8 ~~~rF~LAL~lg~l~~A~e~a~~l~~------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~t 73 (177)
T 3mkq_B 8 PHIRFDLALEYGNLDAALDEAKKLND------SITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVT 73 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHCC------HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHHhCC------HHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHh
Confidence 35567778888888877776654211 1112 2224466778888888877765444 2344455556
Q ss_pred CcHHHHHHHHhhCCCcccccccCCCcHHHHHHHhCCHh-HHHHHHHH
Q 042799 115 GRSHAVAEMLSACPECVEDVTIQHYTALHLAIKSSQYG-VIAIIVDW 160 (449)
Q Consensus 115 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~-~v~~Ll~~ 160 (449)
|+.+-++.+.+.. ....+-+.++|.+...|..+ +++.|.+.
T Consensus 74 g~~e~L~kla~iA-----~~~g~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 74 GDVNKLSKMQNIA-----QTREDFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp TCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHH-----HHCccHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 7766666655431 11122334667777777754 66666554
No 119
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=42.03 E-value=38 Score=18.19 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=9.4
Q ss_pred HHHHHHHhhhhHhHhh
Q 042799 422 IGLAAYGFRLQRKRRR 437 (449)
Q Consensus 422 ~~~~~~~~~~~~~~~~ 437 (449)
+-++.++||+.....+
T Consensus 16 ltflafgfwlfkylqk 31 (32)
T 2lx0_A 16 LTFLAFGFWLFKYLQK 31 (32)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3445567777665543
No 120
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=34.40 E-value=31 Score=21.24 Aligned_cols=10 Identities=30% Similarity=0.355 Sum_probs=4.2
Q ss_pred hhhhHhHhhh
Q 042799 429 FRLQRKRRRS 438 (449)
Q Consensus 429 ~~~~~~~~~~ 438 (449)
++++++||+.
T Consensus 31 ~~~~~RRr~~ 40 (44)
T 2ks1_B 31 IGLFMRRRHI 40 (44)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHhhhhHh
Confidence 3344444443
No 121
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=32.19 E-value=63 Score=30.52 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=19.7
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHH
Q 042799 69 DGFSPMHMASSIGHTEVVRELLK 91 (449)
Q Consensus 69 ~g~tpLh~Aa~~g~~~iv~~Ll~ 91 (449)
-|.|.+|+|++..+.+++..|+.
T Consensus 68 ~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 68 VGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCchhhhhhhhhhhhhHHHHhhh
Confidence 48888999999888888888886
No 122
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=31.40 E-value=20 Score=21.18 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=10.0
Q ss_pred HHHHHHHhCCHHHHHHH
Q 042799 4 KLFEATQAGNVQSLHQL 20 (449)
Q Consensus 4 ~L~~Aa~~g~~~~v~~L 20 (449)
.+..|+..||.+.++.|
T Consensus 16 qiyvA~seGd~etv~~L 32 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKL 32 (40)
T ss_dssp HHHHHHTTSCHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHH
Confidence 34556666666666655
No 123
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=28.89 E-value=1.2e+02 Score=28.77 Aligned_cols=52 Identities=10% Similarity=0.151 Sum_probs=40.7
Q ss_pred HHHHhCCHHHHHHHHhcCcccccccc------------CCCCChHHHHHHHcCCHHHHHHHHhh
Q 042799 7 EATQAGNVQSLHQLLGENPLILHTSA------------LTSAGNPLHVASAYGHIDFVKEIINL 58 (449)
Q Consensus 7 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~------------~~~g~t~Lh~Aa~~g~~~~v~~Ll~~ 58 (449)
..+..|+...|+..+..|.+...... ..-|.|.+|+|++..+-+++..|+..
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhhc
Confidence 34568999999999998876432221 22399999999999999999999973
No 124
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=27.23 E-value=66 Score=18.65 Aligned_cols=15 Identities=20% Similarity=0.100 Sum_probs=7.4
Q ss_pred HHHHHHHhhhhHhHh
Q 042799 422 IGLAAYGFRLQRKRR 436 (449)
Q Consensus 422 ~~~~~~~~~~~~~~~ 436 (449)
++.+...+-+|.+||
T Consensus 20 ~vii~l~~~~~iRRr 34 (35)
T 1iij_A 20 FLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHTTTTTHHHHHC
T ss_pred HHHHHHHhheEEeec
Confidence 333444455555554
No 125
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=24.16 E-value=49 Score=30.86 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHHHHHHhhee
Q 042799 380 LQFELQLCFLAMNFTYDTAVIS 401 (449)
Q Consensus 380 ~~~~~~~~~~~m~~af~~~~~~ 401 (449)
++.+-.++.+.|..+|++|+|-
T Consensus 303 mk~LTiit~IflP~T~IaGiyG 324 (363)
T 2iub_A 303 MKVLTIIATIFMPLTFIAGIYG 324 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 3456678888999999999984
No 126
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=23.71 E-value=54 Score=30.24 Aligned_cols=20 Identities=5% Similarity=-0.074 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHhhe
Q 042799 381 QFELQLCFLAMNFTYDTAVI 400 (449)
Q Consensus 381 ~~~~~~~~~~m~~af~~~~~ 400 (449)
+.+-.++++.+..+|++|+|
T Consensus 280 k~LTiit~IflP~T~IaGiy 299 (339)
T 4ev6_A 280 KILTMVTTIFAVPMWITGIY 299 (339)
T ss_dssp HHHHHHHHHSSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 45557777888999999998
No 127
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=20.11 E-value=1.9e+02 Score=26.49 Aligned_cols=94 Identities=7% Similarity=0.029 Sum_probs=46.6
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHhhC-CCc-ccccCCCCCcHHHHHHHcCcHHHHHHHHHc--CcccccccCCCCCcH
Q 042799 32 ALTSAGNPLHVASAYGHIDFVKEIINLR-PDM-AQEVNQDGFSPMHMASSIGHTEVVRELLKV--DRKLCQLQGPEAKTP 107 (449)
Q Consensus 32 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~-~~~-~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~--~~~~~~~~d~~g~tp 107 (449)
.+..|+..+--....|+.+....+++.- +.+ .-..|..|.-.+..+......+-...+++. +.-..-..|..|...
T Consensus 69 ~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~V 148 (351)
T 3gvo_A 69 TDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHV 148 (351)
T ss_dssp TSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHH
T ss_pred hChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHH
Confidence 3445777776666777776666665532 111 123456666666666655554433333332 111112355566555
Q ss_pred hHHHHHhCcHHHHHHHHh
Q 042799 108 LHCAAIKGRSHAVAEMLS 125 (449)
Q Consensus 108 Lh~A~~~g~~~~v~~Ll~ 125 (449)
+..+...+..+....+++
T Consensus 149 iQk~l~~~~~~~~~~i~~ 166 (351)
T 3gvo_A 149 VQKCIECVQPQSLQFIID 166 (351)
T ss_dssp HHHHHHHSCGGGTHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 555555444433333333
Done!