BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042800
(450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GTX|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTX|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTY|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTY|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTZ|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
pdb|4GTZ|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
Length = 823
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 161/401 (40%), Positives = 229/401 (57%), Gaps = 37/401 (9%)
Query: 56 KLERPVVILVSSDGFRFGY--QFKTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIV 113
+ E P +L S DGFR Y + P I +L N GT + + P++PT TFPNHYSIV
Sbjct: 106 EFESPPTLLFSLDGFRAEYLHTWGGLLPVISKLKNCGTYTK-NMRPMYPTKTFPNHYSIV 164
Query: 114 TGLYPASHGIINNRFVEPRTGDQFSPARHE---PKWWLGEPLWETVANQGLKAAAYFWAG 170
TGLYP SHGII+N+ +P+ FS E P W+ G+P+W T +Q +K+ YFW G
Sbjct: 165 TGLYPESHGIIDNKMYDPKMNASFSLKSKEKFNPLWYKGQPIWVTANHQEVKSGTYFWPG 224
Query: 171 SEVRKGSWDCPKGYCMKYNSSVPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVV 230
S+V P Y + YN SVPFEER+ VL + LPS E P F LY E+PDS GH
Sbjct: 225 SDVEIDGI-LPDIYKV-YNGSVPFEERILAVLEWLQLPSHERPHFYTLYLEEPDSSGHSH 282
Query: 231 GPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGM-VGTCEDKVI---FLD 286
GP + KA+ ++D ++G L+DGL+ G+ K + +IL+ DHGM G+C+ V +L
Sbjct: 283 GPVSSEVIKALQKVDRLVGMLMDGLKDLGLDKCLNLILISDHGMEQGSCKKYVYLNKYLG 342
Query: 287 DL-------APWVKI-PADWVHSYFPLLAIWPPAGHNLTEIVQQMNQGLDSGKVEKGKSL 338
D+ P ++ P D +Y+ N + + ++ E +
Sbjct: 343 DVNNVKVVYGPAARLRPTDVPETYYSF---------NYEALAKNLSCR------EPNQHF 387
Query: 339 RVYLKEELPARLHYAASDRIPPIIGMVDEGFTVAQRRTEGARYCG-GAHGYDNEYFSMRS 397
R YLK LP RLH+A SDRI P+ +D + +A +E +YCG G HG DN + +M++
Sbjct: 388 RPYLKPFLPKRLHFAKSDRIEPLTFYLDPQWQLALNPSE-RKYCGSGFHGSDNLFSNMQA 446
Query: 398 IFIGHGPRFARGRKVPSFENVQIYNVITSLLNIKGAPNNGS 438
+FIG+GP F G +V SFEN+++YN++ LL + APNNGS
Sbjct: 447 LFIGYGPAFKHGAEVDSFENIEVYNLMCDLLGLIPAPNNGS 487
>pdb|4B56|A Chain A, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
pdb|4B56|B Chain B, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
Length = 820
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 161/401 (40%), Positives = 229/401 (57%), Gaps = 37/401 (9%)
Query: 56 KLERPVVILVSSDGFRFGY--QFKTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIV 113
+ E P +L S DGFR Y + P I +L N GT + + P++PT TFPNHYSIV
Sbjct: 102 EFESPPTLLFSLDGFRAEYLHTWGGLLPVISKLKNCGTYTK-NMRPMYPTKTFPNHYSIV 160
Query: 114 TGLYPASHGIINNRFVEPRTGDQFSPARHE---PKWWLGEPLWETVANQGLKAAAYFWAG 170
TGLYP SHGII+N+ +P+ FS E P W+ G+P+W T +Q +K+ YFW G
Sbjct: 161 TGLYPESHGIIDNKMYDPKMNASFSLKSKEKFNPLWYKGQPIWVTANHQEVKSGTYFWPG 220
Query: 171 SEVRKGSWDCPKGYCMKYNSSVPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVV 230
S+V P Y + YN SVPFEER+ VL + LPS E P F LY E+PDS GH
Sbjct: 221 SDVEIDGI-LPDIYKV-YNGSVPFEERILAVLEWLQLPSHERPHFYTLYLEEPDSSGHSH 278
Query: 231 GPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGM-VGTCEDKVI---FLD 286
GP + KA+ ++D ++G L+DGL+ G+ K + +IL+ DHGM G+C+ V +L
Sbjct: 279 GPVSSEVIKALQKVDRLVGMLMDGLKDLGLDKCLNLILISDHGMEQGSCKKYVYLNKYLG 338
Query: 287 DL-------APWVKI-PADWVHSYFPLLAIWPPAGHNLTEIVQQMNQGLDSGKVEKGKSL 338
D+ P ++ P D +Y+ N + + ++ E +
Sbjct: 339 DVNNVKVVYGPAARLRPTDVPETYYSF---------NYEALAKNLSCR------EPNQHF 383
Query: 339 RVYLKEELPARLHYAASDRIPPIIGMVDEGFTVAQRRTEGARYCG-GAHGYDNEYFSMRS 397
R YLK LP RLH+A SDRI P+ +D + +A +E +YCG G HG DN + +M++
Sbjct: 384 RPYLKPFLPKRLHFAKSDRIEPLTFYLDPQWQLALNPSE-RKYCGSGFHGSDNLFSNMQA 442
Query: 398 IFIGHGPRFARGRKVPSFENVQIYNVITSLLNIKGAPNNGS 438
+FIG+GP F G +V SFEN+++YN++ LL + APNNGS
Sbjct: 443 LFIGYGPAFKHGAEVDSFENIEVYNLMCDLLGLIPAPNNGS 483
>pdb|4GTW|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Amp
pdb|4GTW|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Amp
Length = 823
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 159/401 (39%), Positives = 223/401 (55%), Gaps = 37/401 (9%)
Query: 56 KLERPVVILVSSDGFRFGY--QFKTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIV 113
+ E P +L S DGFR Y + P I +L N GT + P +PT TFPNHYSIV
Sbjct: 106 EFESPPTLLFSLDGFRAEYLHTWGGLLPVISKLKNCGTYTKNXR-PXYPTKTFPNHYSIV 164
Query: 114 TGLYPASHGIINNRFVEPRTGDQFSPARHE---PKWWLGEPLWETVANQGLKAAAYFWAG 170
TGLYP SHGII+N+ +P+ FS E P W+ G+P+W T +Q +K+ YFW G
Sbjct: 165 TGLYPESHGIIDNKXYDPKXNASFSLKSKEKFNPLWYKGQPIWVTANHQEVKSGTYFWPG 224
Query: 171 SEVRKGSWDCPKGYCMKYNSSVPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVV 230
S+V P Y + YN SVPFEER+ VL + LPS E P F LY E+PDS GH
Sbjct: 225 SDVEIDGI-LPDIYKV-YNGSVPFEERILAVLEWLQLPSHERPHFYTLYLEEPDSSGHSH 282
Query: 231 GPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGM-VGTCEDKVI---FLD 286
GP + KA+ ++D ++G L DGL+ G+ K + +IL+ DHG G+C+ V +L
Sbjct: 283 GPVSSEVIKALQKVDRLVGXLXDGLKDLGLDKCLNLILISDHGXEQGSCKKYVYLNKYLG 342
Query: 287 DL-------APWVKI-PADWVHSYFPLLAIWPPAGHNLTEIVQQMNQGLDSGKVEKGKSL 338
D+ P ++ P D +Y+ N + + ++ E +
Sbjct: 343 DVNNVKVVYGPAARLRPTDVPETYYSF---------NYEALAKNLSCR------EPNQHF 387
Query: 339 RVYLKEELPARLHYAASDRIPPIIGMVDEGFTVAQRRTEGARYCG-GAHGYDNEYFSMRS 397
R YLK LP RLH+A SDRI P+ +D + +A +E +YCG G HG DN + + ++
Sbjct: 388 RPYLKPFLPKRLHFAKSDRIEPLTFYLDPQWQLALNPSE-RKYCGSGFHGSDNLFSNXQA 446
Query: 398 IFIGHGPRFARGRKVPSFENVQIYNVITSLLNIKGAPNNGS 438
+FIG+GP F G +V SFEN+++YN+ LL + APNNGS
Sbjct: 447 LFIGYGPAFKHGAEVDSFENIEVYNLXCDLLGLIPAPNNGS 487
>pdb|3NKM|A Chain A, Crystal Structure Of Mouse Autotaxin
pdb|3NKN|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
14:0-Lpa
pdb|3NKO|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
16:0-Lpa
pdb|3NKP|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:1-Lpa
pdb|3NKQ|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:3-Lpa
pdb|3NKR|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
22:6-Lpa
Length = 831
Score = 234 bits (596), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 142/391 (36%), Positives = 206/391 (52%), Gaps = 37/391 (9%)
Query: 59 RPVVILVSSDGFRFGYQFKTPT--PNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGL 116
RP +I+ S DGFR Y K PNI +L + GT A + PV+PT TFPN Y++ TGL
Sbjct: 127 RPPLIIFSVDGFRASYMKKGSKVMPNIEKLRSCGTHAPY-MRPVYPTKTFPNLYTLATGL 185
Query: 117 YPASHGIINNRFVEPRTGDQFSPARHEP---KWWLGEPLWETVANQGLKAAAYFWAGSEV 173
YP SHGI+ N +P F E +WW G+PLW T QG++A +FW+
Sbjct: 186 YPESHGIVGNSMYDPVFDATFHLRGREKFNHRWWGGQPLWITATKQGVRAGTFFWS---- 241
Query: 174 RKGSWDCPKGYCMKYNSSVPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPD 233
S+P E R+ T+L + LP +E P+ A Y E PD GH GP
Sbjct: 242 ----------------VSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPF 285
Query: 234 DVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVGTCEDKVIFLDDLAPWVK 293
+T + ID +G+L+DGL++ + + V VI +GDHGM D+ FL + V
Sbjct: 286 GPEMTNPLREIDKTVGQLMDGLKQLKLHRCVNVIFVGDHGMEDVTCDRTEFLSNYLTNVD 345
Query: 294 IPADWVHSYFPLLAIWPPAGHNLTEIVQQMNQGLDSGKVEKGKSLRVYLKEELPARLHYA 353
D L I P +NL + + L K + + + Y+K+ LP RLHYA
Sbjct: 346 ---DITLVPGTLGRIRPKIPNNLKYDPKAIIANLTCKKPD--QHFKPYMKQHLPKRLHYA 400
Query: 354 ASDRIPPIIGMVDEGFTVAQ------RRTEGARYCGGAHGYDNEYFSMRSIFIGHGPRFA 407
+ RI + +V+ + VA+ ++ G + G HG+DN+ SM+++F+G+GP F
Sbjct: 401 NNRRIEDLHLLVERRWHVARKPLDVYKKPSGKCFFQGDHGFDNKVNSMQTVFVGYGPTFK 460
Query: 408 RGRKVPSFENVQIYNVITSLLNIKGAPNNGS 438
KVP FEN+++YNV+ LL +K APNNG+
Sbjct: 461 YRTKVPPFENIELYNVMCDLLGLKPAPNNGT 491
>pdb|2XRG|A Chain A, Crystal Structure Of Autotaxin (Enpp2) In Complex With The
Ha155 Boronic Acid Inhibitor
Length = 862
Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 142/391 (36%), Positives = 205/391 (52%), Gaps = 37/391 (9%)
Query: 59 RPVVILVSSDGFRFGYQFKTPT--PNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGL 116
RP +I+ S DGFR Y K PNI +L + GT A + PV+PT TFPN Y++ TGL
Sbjct: 162 RPPLIIFSVDGFRASYMKKGSKVMPNIEKLRSCGTHAPY-MRPVYPTKTFPNLYTLATGL 220
Query: 117 YPASHGIINNRFVEPRTGDQFSPARHEP---KWWLGEPLWETVANQGLKAAAYFWAGSEV 173
YP SHGI+ N +P F E +WW G+PLW T QG++A +FW+
Sbjct: 221 YPESHGIVGNSMYDPVFDASFHLRGREKFNHRWWGGQPLWITATKQGVRAGTFFWS---- 276
Query: 174 RKGSWDCPKGYCMKYNSSVPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPD 233
S+P E R+ T+L + LP +E P+ A Y E PD GH GP
Sbjct: 277 ----------------VSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPF 320
Query: 234 DVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVGTCEDKVIFLDDLAPWVK 293
+T + ID +G+L+DGL++ + + V VI +GDHGM D+ FL + V
Sbjct: 321 GPEMTNPLREIDKTVGQLMDGLKQLRLHRCVNVIFVGDHGMEDVTCDRTEFLSNYLTNVD 380
Query: 294 IPADWVHSYFPLLAIWPPAGHNLTEIVQQMNQGLDSGKVEKGKSLRVYLKEELPARLHYA 353
D L I + +N + + L K + + + Y+K+ LP RLHYA
Sbjct: 381 ---DITLVPGTLGRIRAKSINNSKYDPKTIIAALTCKKPD--QHFKPYMKQHLPKRLHYA 435
Query: 354 ASDRIPPIIGMVDEGFTVAQ------RRTEGARYCGGAHGYDNEYFSMRSIFIGHGPRFA 407
+ RI I +VD + VA+ ++ G + G HG+DN+ SM+++F+G+GP F
Sbjct: 436 NNRRIEDIHLLVDRRWHVARKPLDVYKKPSGKCFFQGDHGFDNKVNSMQTVFVGYGPTFK 495
Query: 408 RGRKVPSFENVQIYNVITSLLNIKGAPNNGS 438
KVP FEN+++YNV+ LL +K APNNG+
Sbjct: 496 YRTKVPPFENIELYNVMCDLLGLKPAPNNGT 526
>pdb|2XR9|A Chain A, Crystal Structure Of Autotaxin (Enpp2)
Length = 827
Score = 232 bits (591), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 142/391 (36%), Positives = 205/391 (52%), Gaps = 37/391 (9%)
Query: 59 RPVVILVSSDGFRFGYQFKTPT--PNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGL 116
RP +I+ S DGFR Y K PNI +L + GT A + PV+PT TFPN Y++ TGL
Sbjct: 127 RPPLIIFSVDGFRASYMKKGSKVMPNIEKLRSCGTHAPY-MRPVYPTKTFPNLYTLATGL 185
Query: 117 YPASHGIINNRFVEPRTGDQFSPARHEP---KWWLGEPLWETVANQGLKAAAYFWAGSEV 173
YP SHGI+ N +P F E +WW G+PLW T QG++A +FW+
Sbjct: 186 YPESHGIVGNSMYDPVFDASFHLRGREKFNHRWWGGQPLWITATKQGVRAGTFFWS---- 241
Query: 174 RKGSWDCPKGYCMKYNSSVPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPD 233
S+P E R+ T+L + LP +E P+ A Y E PD GH GP
Sbjct: 242 ----------------VSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPF 285
Query: 234 DVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVGTCEDKVIFLDDLAPWVK 293
+T + ID +G+L+DGL++ + + V VI +GDHGM D+ FL + V
Sbjct: 286 GPEMTNPLREIDKTVGQLMDGLKQLRLHRCVNVIFVGDHGMEDVTCDRTEFLSNYLTNVD 345
Query: 294 IPADWVHSYFPLLAIWPPAGHNLTEIVQQMNQGLDSGKVEKGKSLRVYLKEELPARLHYA 353
D L I + +N + + L K + + + Y+K+ LP RLHYA
Sbjct: 346 ---DITLVPGTLGRIRAKSINNSKYDPKTIIAALTCKKPD--QHFKPYMKQHLPKRLHYA 400
Query: 354 ASDRIPPIIGMVDEGFTVAQ------RRTEGARYCGGAHGYDNEYFSMRSIFIGHGPRFA 407
+ RI I +VD + VA+ ++ G + G HG+DN+ SM+++F+G+GP F
Sbjct: 401 NNRRIEDIHLLVDRRWHVARKPLDVYKKPSGKCFFQGDHGFDNKVNSMQTVFVGYGPTFK 460
Query: 408 RGRKVPSFENVQIYNVITSLLNIKGAPNNGS 438
KVP FEN+++YNV+ LL +K APNNG+
Sbjct: 461 YRTKVPPFENIELYNVMCDLLGLKPAPNNGT 491
>pdb|2GSN|A Chain A, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE
pdb|2GSN|B Chain B, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE
pdb|2GSO|A Chain A, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE IN COMPLEX WITH
VANADATE
pdb|2GSO|B Chain B, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE IN COMPLEX WITH
VANADATE
pdb|2GSU|A Chain A, Structure Of Xac Nucleotide
Pyrophosphatase/phosphodiesterase In Complex With Amp
pdb|2GSU|B Chain B, Structure Of Xac Nucleotide
Pyrophosphatase/phosphodiesterase In Complex With Amp
pdb|2RH6|A Chain A, Structure Of Xac Npp For Evaluation Of Refinement
Methodology
pdb|2RH6|B Chain B, Structure Of Xac Npp For Evaluation Of Refinement
Methodology
Length = 393
Score = 202 bits (514), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 132/404 (32%), Positives = 196/404 (48%), Gaps = 43/404 (10%)
Query: 61 VVILVSSDGFRFGYQFKTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPAS 120
++L+S DG R + TPN+ L +G A + P +P+ TFPNHY++VTGL P
Sbjct: 8 ALLLISIDGLRADMLDRGITPNLSHLAREGVRARW-MAPSYPSLTFPNHYTLVTGLRPDH 66
Query: 121 HGIINNRFVEPRTGDQF---SPARHEPKWWLGEPLWETVANQGLKAAAYFWAGSE----- 172
HGI++N +P G + S A + +WW GEP+W V N G AA + W GSE
Sbjct: 67 HGIVHNSMRDPTLGGFWLSKSEAVGDARWWGGEPVWVGVENTGQHAATWSWPGSEAAIKG 126
Query: 173 VRKGSWDCPKGYCMKYNSSVPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGP 232
VR W Y V + RVD V + + LYFE D GH GP
Sbjct: 127 VRPSQW-------RHYQKGVRLDTRVDAVRGWLATDGAQRNRLVTLYFEHVDEAGHDHGP 179
Query: 233 DDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVGTCEDKVIFLDDLAPWV 292
+ AV +D+ IGRL+ G+++ G +I++ DHGM I ++D+AP
Sbjct: 180 ESRQYADAVRAVDAAIGRLLAGMQRDGTRARTNIIVVSDHGMAEVAPGHAISVEDIAP-- 237
Query: 293 KIPADWVHSYFPLLAIWPPAGHNLT-EIVQQMNQGLDSGKVEKGKSLRVYLKEELPARLH 351
P +A G + E + ++ + + K ELPAR
Sbjct: 238 -----------PQIATAITDGQVIGFEPLPGQQAAAEASVLGAHDHYDCWRKAELPARWQ 286
Query: 352 YAASDRIPPIIGMVDEGF------TVAQRRTEGARYCGGAHGYDNEYFSMRSIFIGHGPR 405
Y + RIP ++ + EG+ +A+R G R G+HGYD SMR++F+ GP
Sbjct: 287 YGSHPRIPSLVCQMHEGWDALFPDKLAKRAQRGTR---GSHGYDPALPSMRAVFLAQGPD 343
Query: 406 FARGRKVPSFENVQIYNVITSLLNIKGAPNNGSKSFPQSILLPA 449
A+G+ +P F+NV +Y +++ LL I APN+G+ + LLPA
Sbjct: 344 LAQGKTLPGFDNVDVYALMSRLLGIPAAPNDGNP----ATLLPA 383
>pdb|1EI6|A Chain A, Crystal Structure Of Phosphonoacetate Hydrolase Complexed
With Phosphonoformate
pdb|1EI6|B Chain B, Crystal Structure Of Phosphonoacetate Hydrolase Complexed
With Phosphonoformate
pdb|1EI6|C Chain C, Crystal Structure Of Phosphonoacetate Hydrolase Complexed
With Phosphonoformate
pdb|1EI6|D Chain D, Crystal Structure Of Phosphonoacetate Hydrolase Complexed
With Phosphonoformate
Length = 406
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 83/217 (38%), Gaps = 41/217 (18%)
Query: 100 VFPTYTFPNHYSIVTGLYPASHGIINNRFVEPRTGDQFSPARHEPKWWLGEPLWETVANQ 159
V P++T PN+ SIVTG P+ HGI N F + T ++ ++ K+ + +A
Sbjct: 58 VVPSFTNPNNLSIVTGAPPSVHGICGNFFFDQETQEEV--LMNDAKYLRAPTILAEMAKA 115
Query: 160 GLKAAAYFWAGSEVRKGSWDCPKGYCMKYNSS--VPFEER-VDTVLSYFDLP-------- 208
G + A A ++R KG C + V EE V+ +L+ +P
Sbjct: 116 G-QLVAVVTAKDKLRNLLGHQLKGICFSAEKADQVNLEEHGVENILARVGMPVPSVYSAD 174
Query: 209 -------------SDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGL 255
++E P F L D H H G + A ++D
Sbjct: 175 LSEFVFAAGLSLLTNERPDFMYLSTTDYVQHKHAPGTPEANAFYA----------MMDSY 224
Query: 256 EKRGVFKDVTVILLGDHGMVGTCED----KVIFLDDL 288
KR + V + DHGM + ++FL DL
Sbjct: 225 FKRYHEQGAIVAITADHGMNAKTDAIGRPNILFLQDL 261
>pdb|3SZY|A Chain A, Crystal Structure Of Phosphonoacetate Hydrolase From
Sinorhizobium Meliloti 1021 In Apo Form
pdb|3SZZ|A Chain A, Crystal Structure Of Phosphonoacetate Hydrolase From
Sinorhizobium Meliloti 1021 In Complex With Acetate
pdb|3T00|A Chain A, Crystal Structure Of Phosphonoacetate Hydrolase From
Sinorhizobium Meliloti 1021 In Complex With Vanadate
pdb|3T01|A Chain A, Crystal Structure Of Phosphonoacetate Hydrolase From
Sinorhizobium Meliloti 1021 In Complex With
Phosphonoformate
Length = 427
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 100 VFPTYTFPNHYSIVTGLYPASHGIINNRFVEPRTGDQFSPARHEPKWWLGEPLWETVANQ 159
V P++T PN+ SI TG PA HGI N EP TG++ ++PK+ +++ +
Sbjct: 66 VIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEV--MMNDPKFLRAPTIFQAFYDA 123
Query: 160 GLKAA 164
G + A
Sbjct: 124 GARVA 128
>pdb|3T02|A Chain A, Crystal Structure Of Phosphonoacetate Hydrolase From
Sinorhizobium Meliloti 1021 In Complex With
Phosphonoacetate
Length = 427
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 100 VFPTYTFPNHYSIVTGLYPASHGIINNRFVEPRTGDQFSPARHEPKWWLGEPLWETVANQ 159
V P++ PN+ SI TG PA HGI N EP TG++ ++PK+ +++ +
Sbjct: 66 VIPSFANPNNLSIATGSPPAVHGICGNYLYEPSTGEEV--MMNDPKFLRAPTIFQAFYDA 123
Query: 160 GLKAA 164
G + A
Sbjct: 124 GARVA 128
>pdb|3O24|A Chain A, Crystal Structure Of The Brevianamide F Prenyltransferase
Ftmpt1 From Aspergillus Fumigatus
pdb|3O2K|A Chain A, Crystal Structure Of Brevianamide F Prenyltransferase
Complexed With Brevianamide F And Dimethylallyl
S-Thiolodiphosphate
Length = 474
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 143 EPKWWLGEPLWETVANQGLKAAAYFWAGSEVRKGSWDCPKGYCMKYNSSVPFEERVDTVL 202
E W G + A +GL+ +FWA ++R+G + P+G+C SS FE ++
Sbjct: 308 EDIWTFGGLRRDPDALRGLELLRHFWADIQMREGYYTMPRGFCELGKSSAGFEA---PMM 364
Query: 203 SYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIG 249
+F L + P F DP + V G + + + + +G
Sbjct: 365 FHFHLDGSQSP------FPDPQMYVCVFGMNSRKLVEGLTTFYRRVG 405
>pdb|3Q3Q|A Chain A, Crystal Structure Of Spap: An Novel Alkaline Phosphatase
From Bacterium Sphingomonas Sp. Strain Bsar-1
Length = 565
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 224 DSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHG 273
D GH G + V R+D+ +G D L+K G+ D V+L DHG
Sbjct: 300 DYVGHTFGTEGTESCIQVDRLDTELGAFFDKLDKDGI--DYVVVLTADHG 347
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 61 VVILVSSDGFR---FGYQFKTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLY 117
+++ +S D F F + T + RL ++G G T T P H +I+TG
Sbjct: 42 LIVAISVDQFSADLFSEYRQYYTGGLKRLTSEGAVFPRGYQSHAATETCPGHSTILTGSR 101
Query: 118 PASHGIINNRFVE 130
P+ GII N + +
Sbjct: 102 PSRTGIIANNWFD 114
>pdb|2QZU|A Chain A, Crystal Structure Of The Putative Sulfatase Yidj From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr123
Length = 491
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 240 AVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMV 275
+ +D +GR+I+ L++ +F + V+ DHG+
Sbjct: 282 CITGVDENVGRIIEALKQNNLFDNTIVVFTSDHGIC 317
>pdb|2P2V|A Chain A, Crystal Structure Analysis Of Monofunctional Alpha-2,3-
Sialyltransferase Cst-I From Campylobacter Jejuni
pdb|2P56|A Chain A, Crystal Structure Of Alpha-2,3-Sialyltransferase From
Campylobacter Jejuni In Apo Form
Length = 288
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 131 PRTGDQFSPARH--EPKWWLGEPLWETVANQGLKAAAYFWAGSEVRKGSWDCPKGYCMKY 188
PR D F + E K++LG+ + N G+ Y A + K ++ +C +
Sbjct: 40 PREYDVFRCNQFYFEDKYYLGKKIKAVFFNPGVFLQQYHTAKQLILKNEYEIKNIFCSTF 99
Query: 189 NSSVPFEERVDTVLSYFDLPSD 210
N +PF E D + +++ D
Sbjct: 100 N--LPFIESNDFLHQFYNFFPD 119
>pdb|2J0G|A Chain A, L-Ficolin Complexed To N-Acetyl-Mannosamine
pdb|2J0G|B Chain B, L-Ficolin Complexed To N-Acetyl-Mannosamine
pdb|2J0G|C Chain C, L-Ficolin Complexed To N-Acetyl-Mannosamine
pdb|2J0G|D Chain D, L-Ficolin Complexed To N-Acetyl-Mannosamine
pdb|2J0G|E Chain E, L-Ficolin Complexed To N-Acetyl-Mannosamine
pdb|2J0G|F Chain F, L-Ficolin Complexed To N-Acetyl-Mannosamine
pdb|2J0H|A Chain A, L-Ficolin Complexed To Acetyl-Choline
pdb|2J0H|B Chain B, L-Ficolin Complexed To Acetyl-Choline
pdb|2J0H|C Chain C, L-Ficolin Complexed To Acetyl-Choline
pdb|2J0H|D Chain D, L-Ficolin Complexed To Acetyl-Choline
pdb|2J0H|E Chain E, L-Ficolin Complexed To Acetyl-Choline
pdb|2J0H|F Chain F, L-Ficolin Complexed To Acetyl-Choline
pdb|2J0Y|A Chain A, L-ficolin Complexed To B-1,3-d-glucan
pdb|2J0Y|B Chain B, L-ficolin Complexed To B-1,3-d-glucan
pdb|2J0Y|C Chain C, L-ficolin Complexed To B-1,3-d-glucan
pdb|2J0Y|D Chain D, L-ficolin Complexed To B-1,3-d-glucan
pdb|2J0Y|E Chain E, L-ficolin Complexed To B-1,3-d-glucan
pdb|2J0Y|F Chain F, L-ficolin Complexed To B-1,3-d-glucan
pdb|2J1G|A Chain A, L-Ficolin Complexed To N-Acetyl-Cystein
pdb|2J1G|B Chain B, L-Ficolin Complexed To N-Acetyl-Cystein
pdb|2J1G|C Chain C, L-Ficolin Complexed To N-Acetyl-Cystein
pdb|2J1G|D Chain D, L-Ficolin Complexed To N-Acetyl-Cystein
pdb|2J1G|E Chain E, L-Ficolin Complexed To N-Acetyl-Cystein
pdb|2J1G|F Chain F, L-Ficolin Complexed To N-Acetyl-Cystein
pdb|2J2P|A Chain A, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
pdb|2J2P|B Chain B, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
pdb|2J2P|C Chain C, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
pdb|2J2P|D Chain D, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
pdb|2J2P|E Chain E, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
pdb|2J2P|F Chain F, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
pdb|2J3G|A Chain A, L-ficolin
pdb|2J3G|B Chain B, L-ficolin
pdb|2J3G|C Chain C, L-ficolin
pdb|2J3G|D Chain D, L-ficolin
pdb|2J3G|E Chain E, L-ficolin
pdb|2J3G|F Chain F, L-ficolin
pdb|2J3U|A Chain A, L-Ficolin Complexed To Galactose
pdb|2J3U|B Chain B, L-Ficolin Complexed To Galactose
pdb|2J3U|C Chain C, L-Ficolin Complexed To Galactose
pdb|2J3U|D Chain D, L-Ficolin Complexed To Galactose
pdb|2J3U|E Chain E, L-Ficolin Complexed To Galactose
pdb|2J3U|F Chain F, L-Ficolin Complexed To Galactose
pdb|2J61|B Chain B, L-ficolin Complexed To N-acetylglucosamine (forme C)
Length = 218
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 69 GFRFGYQFKTPTPNIHRLINQGT-EAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNR 127
G R G +F NIH L QGT E T L+ Y F + S + ++
Sbjct: 72 GSRLG-EFWLGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGA 130
Query: 128 FVEPRTGDQFS 138
FVE GD +
Sbjct: 131 FVEGSAGDSLT 141
>pdb|2J3F|D Chain D, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
Length = 219
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 69 GFRFGYQFKTPTPNIHRLINQGT-EAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNR 127
G R G +F NIH L QGT E T L+ Y F + S + ++
Sbjct: 73 GSRLG-EFWLGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGA 131
Query: 128 FVEPRTGDQFS 138
FVE GD +
Sbjct: 132 FVEGSAGDSLT 142
>pdb|2J3F|A Chain A, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
pdb|2J3F|B Chain B, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
pdb|2J3F|C Chain C, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
pdb|2J3F|E Chain E, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
pdb|2J3F|F Chain F, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
pdb|2J3O|A Chain A, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
pdb|2J3O|B Chain B, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
pdb|2J3O|C Chain C, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
pdb|2J3O|D Chain D, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
pdb|2J3O|E Chain E, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
pdb|2J3O|F Chain F, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
Length = 219
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 69 GFRFGYQFKTPTPNIHRLINQGT-EAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNR 127
G R G +F NIH L QGT E T L+ Y F + S + ++
Sbjct: 73 GSRLG-EFWLGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGA 131
Query: 128 FVEPRTGDQFS 138
FVE GD +
Sbjct: 132 FVEGSAGDSLT 142
>pdb|2J61|A Chain A, L-ficolin Complexed To N-acetylglucosamine (forme C)
Length = 218
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 69 GFRFGYQFKTPTPNIHRLINQGT-EAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNR 127
G R G +F NIH L QGT E T L+ Y F + S + ++
Sbjct: 72 GSRLG-EFWLGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFRVADEAEKYNLVLGA 130
Query: 128 FVEPRTGDQFS 138
FVE GD +
Sbjct: 131 FVEGSAGDSLT 141
>pdb|1HDH|A Chain A, Arylsulfatase From Pseudomonas Aeruginosa
pdb|1HDH|B Chain B, Arylsulfatase From Pseudomonas Aeruginosa
Length = 536
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 241 VARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVGTC 278
V R+D IGR++D L ++G + V+ + D+G G
Sbjct: 287 VERMDWNIGRVVDYLRRQGELDNTFVLFMSDNGAEGAL 324
>pdb|3JQ0|A Chain A, Crystal Structure Of Susd Superfamily Protein
(Yp_001299712.1) From Bacteroides Vulgatus Atcc 8482 At
1.13 A Resolution
Length = 493
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 148 LGEPLWETVANQGLKAAAYFWAGSEVRKGSWD 179
LG W A Q LK AY W+G + G+ D
Sbjct: 175 LGRHFWSAAATQXLKGEAYLWSGRQXNGGNSD 206
>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK7|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|E Chain E, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|F Chain F, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|G Chain G, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|H Chain H, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
Length = 269
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 189 NSSVPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGH 228
N +VPF+E + +L Y + + EI A + FE+ ++G+
Sbjct: 64 NVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFENGKAYGY 103
>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
Length = 275
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 189 NSSVPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGH 228
N +VPF+E + +L Y + + EI A + FE+ ++G+
Sbjct: 70 NVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFENGKAYGY 109
>pdb|2VTF|A Chain A, X-Ray Crystal Structure Of The Endo-Beta-N-
Acetylglucosaminidase From Arthrobacter Protophormiae
E173q Mutant Reveals A Tim Barrel Catalytic Domain And
Two Ancillary Domains
pdb|2VTF|B Chain B, X-Ray Crystal Structure Of The Endo-Beta-N-
Acetylglucosaminidase From Arthrobacter Protophormiae
E173q Mutant Reveals A Tim Barrel Catalytic Domain And
Two Ancillary Domains
Length = 626
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 319 IVQQMNQGLDSGKVEKGKSLRVYLKEELPARLHYAASDRIPPIIGMVDEGFTVAQR 374
+ Q +G D G E ++ VYL+E+ P +H D M+D G Q
Sbjct: 174 FINQQTEGADEGTAEAMQAFLVYLQEQKPEGMHIMWYDS------MIDTGAIAWQN 223
>pdb|2W8S|B Chain B, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
pdb|2W8S|C Chain C, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
pdb|2W8S|D Chain D, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
Length = 514
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 241 VARIDSMIGRLIDGLEKRGVFKDVTVILLGDHG 273
+ ID +GR+ L++ G + D +I DHG
Sbjct: 294 ITEIDDCLGRVFAYLDETGQWDDTLIIFTSDHG 326
>pdb|2W8S|A Chain A, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
Length = 513
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 241 VARIDSMIGRLIDGLEKRGVFKDVTVILLGDHG 273
+ ID +GR+ L++ G + D +I DHG
Sbjct: 293 ITEIDDCLGRVFAYLDETGQWDDTLIIFTSDHG 325
>pdb|2VQR|A Chain A, Crystal Structure Of A Phosphonate Monoester Hydrolase
From Rhizobium Leguminosarum: A New Member Of The
Alkaline Phosphatase Superfamily
Length = 514
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 241 VARIDSMIGRLIDGLEKRGVFKDVTVILLGDHG 273
+ +D +GR+ L++ G + D +I DHG
Sbjct: 294 ITEVDDCLGRVFSYLDETGQWDDTLIIFTSDHG 326
>pdb|1XB2|B Chain B, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 291
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 246 SMIGRLIDGLEKRGVFKDVTVILLGDHGMVGTCEDKVIFLDDLAPWVKIPADWVHSYFPL 305
S + L G E+ G KD + +G G E+ ++ A WVK+PA + +
Sbjct: 125 SELSELPAGPEREGSLKDQLALAIGKLG-----ENMIL---KRAAWVKVPAGFYVGSYVH 176
Query: 306 LAIWPPAGHNL 316
A+ P+ HNL
Sbjct: 177 GAMHSPSLHNL 187
>pdb|2W37|A Chain A, Crystal Structure Of The Hexameric Catabolic Ornithine
Transcarbamylase From Lactobacillus Hilgardii
pdb|2W37|B Chain B, Crystal Structure Of The Hexameric Catabolic Ornithine
Transcarbamylase From Lactobacillus Hilgardii
pdb|2W37|C Chain C, Crystal Structure Of The Hexameric Catabolic Ornithine
Transcarbamylase From Lactobacillus Hilgardii
Length = 359
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 180 CPKGYCMKYNSSVPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITK 239
P Y N ++ FE+ S F S ++ A H +G +D+ + K
Sbjct: 60 IPHHYLEGKNIALLFEKSSTRTRSAFTTASIDLGA-----------HPEYLGQNDIQLGK 108
Query: 240 AVARIDS--MIGRLIDGLEKRGVFKDVTVILLGDHGM 274
+ D+ ++G + DG+E RG + IL D G+
Sbjct: 109 KESTSDTAKVLGSMFDGIEFRGFKQSDAEILARDSGV 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,609,442
Number of Sequences: 62578
Number of extensions: 656162
Number of successful extensions: 1275
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1222
Number of HSP's gapped (non-prelim): 37
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)