Query 042800
Match_columns 450
No_of_seqs 373 out of 3108
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 09:37:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2645 Type I phosphodiestera 100.0 1.4E-62 3E-67 467.2 28.0 379 55-447 18-399 (418)
2 PF01663 Phosphodiest: Type I 100.0 1.8E-37 3.9E-42 304.1 7.7 319 62-389 1-365 (365)
3 TIGR02335 hydr_PhnA phosphonoa 100.0 2.9E-35 6.3E-40 286.7 17.9 337 59-424 12-403 (408)
4 TIGR03417 chol_sulfatase choli 100.0 3.6E-34 7.8E-39 289.4 22.6 200 58-274 1-292 (500)
5 PRK13759 arylsulfatase; Provis 100.0 6.2E-32 1.4E-36 272.1 24.4 201 58-274 5-307 (485)
6 KOG3867 Sulfatase [General fun 100.0 8.8E-29 1.9E-33 240.9 21.0 218 57-276 27-310 (528)
7 KOG3731 Sulfatases [Carbohydra 100.0 3.5E-28 7.6E-33 225.0 21.0 271 59-447 34-383 (541)
8 COG3119 AslA Arylsulfatase A a 100.0 9.6E-28 2.1E-32 240.7 23.6 69 58-128 3-77 (475)
9 COG1524 Uncharacterized protei 100.0 9.8E-29 2.1E-33 247.4 14.9 376 55-442 34-444 (450)
10 COG3379 Uncharacterized conser 100.0 9.1E-27 2E-31 213.6 20.6 357 60-433 4-457 (471)
11 PF00884 Sulfatase: Sulfatase; 99.9 3.4E-26 7.4E-31 218.6 16.5 202 60-275 1-251 (308)
12 PRK03776 phosphoglycerol trans 99.9 5E-21 1.1E-25 194.3 25.7 208 56-275 158-398 (762)
13 PRK12363 phosphoglycerol trans 99.9 3.4E-21 7.4E-26 195.5 22.4 206 57-274 154-394 (703)
14 COG3083 Predicted hydrolase of 99.8 7.4E-20 1.6E-24 173.0 17.5 198 56-277 256-465 (600)
15 PRK09598 lipid A phosphoethano 99.8 5.3E-18 1.1E-22 170.1 26.4 190 56-275 220-442 (522)
16 PRK10649 hypothetical protein; 99.8 7.6E-18 1.7E-22 171.6 18.1 190 58-275 235-465 (577)
17 KOG2125 Glycosylphosphatidylin 99.7 2E-17 4.3E-22 162.2 14.6 199 56-277 47-256 (760)
18 KOG2126 Glycosylphosphatidylin 99.7 1.1E-16 2.4E-21 161.1 15.7 186 61-277 60-266 (895)
19 PRK11598 putative metal depend 99.7 2.1E-15 4.6E-20 151.7 23.7 189 57-275 231-458 (545)
20 cd00016 alkPPc Alkaline phosph 99.6 3.5E-14 7.6E-19 137.4 22.0 79 192-277 231-309 (384)
21 PRK11560 phosphoethanolamine t 99.6 8.5E-14 1.8E-18 140.2 21.8 189 58-275 246-468 (558)
22 TIGR01696 deoB phosphopentomut 99.6 8E-14 1.7E-18 132.3 16.3 108 150-274 217-325 (381)
23 PRK05362 phosphopentomutase; P 99.6 8.1E-14 1.8E-18 133.7 16.4 109 150-274 224-333 (394)
24 KOG2124 Glycosylphosphatidylin 99.6 3E-14 6.4E-19 143.6 13.9 207 60-277 44-262 (883)
25 PRK05434 phosphoglyceromutase; 99.5 1.8E-13 3.8E-18 135.6 17.3 111 156-275 328-444 (507)
26 PF01676 Metalloenzyme: Metall 99.5 3.2E-14 6.9E-19 131.0 5.8 72 195-275 126-197 (252)
27 PRK12383 putative mutase; Prov 99.4 2.9E-12 6.2E-17 123.0 15.4 107 151-274 235-341 (406)
28 TIGR01307 pgm_bpd_ind 2,3-bisp 99.4 4.1E-12 9E-17 125.0 16.1 75 192-275 364-438 (501)
29 PLN02538 2,3-bisphosphoglycera 99.3 6.9E-11 1.5E-15 116.6 16.3 75 192-275 403-477 (558)
30 COG1368 MdoB Phosphoglycerol t 99.3 7.2E-11 1.6E-15 123.2 17.2 202 56-275 258-494 (650)
31 PF02995 DUF229: Protein of un 99.3 1.1E-10 2.4E-15 117.5 16.2 223 56-313 123-371 (497)
32 COG1785 PhoA Alkaline phosphat 99.1 4E-08 8.7E-13 95.4 23.4 79 192-277 280-358 (482)
33 PRK10518 alkaline phosphatase; 98.9 2E-07 4.2E-12 91.7 18.4 78 192-276 324-401 (476)
34 COG1015 DeoB Phosphopentomutas 98.8 9.8E-08 2.1E-12 88.4 13.7 111 150-276 227-338 (397)
35 COG2194 Predicted membrane-ass 98.6 8.6E-07 1.9E-11 89.6 15.9 219 59-311 231-488 (555)
36 PF08665 PglZ: PglZ domain; I 98.6 1.2E-07 2.7E-12 82.8 7.7 62 212-277 111-177 (181)
37 COG0696 GpmI Phosphoglyceromut 98.6 2.1E-06 4.5E-11 82.7 15.3 76 192-276 371-446 (509)
38 KOG4513 Phosphoglycerate mutas 98.4 1E-05 2.2E-10 75.0 14.1 71 196-275 391-461 (531)
39 TIGR03397 acid_phos_Burk acid 98.1 0.00016 3.4E-09 71.5 17.2 57 210-274 342-399 (483)
40 PRK04024 cofactor-independent 98.0 1.5E-05 3.3E-10 78.0 8.6 71 193-274 279-349 (412)
41 smart00098 alkPPc Alkaline pho 98.0 2E-05 4.3E-10 77.0 9.2 79 192-277 234-312 (419)
42 TIGR02687 conserved hypothetic 98.0 1.1E-05 2.5E-10 85.8 7.8 60 212-277 569-631 (844)
43 PF00245 Alk_phosphatase: Alka 97.7 4.5E-05 9.7E-10 75.2 5.2 76 193-275 238-313 (421)
44 TIGR00306 apgM 2,3-bisphosphog 97.7 0.00014 3.1E-09 71.0 8.2 71 194-275 274-344 (396)
45 PRK04200 cofactor-independent 97.4 0.00071 1.5E-08 66.2 8.3 72 193-274 269-341 (395)
46 TIGR02535 hyp_Hser_kinase prop 97.3 0.0009 1.9E-08 65.5 8.2 73 193-274 270-343 (396)
47 PF04185 Phosphoesterase: Phos 97.0 0.003 6.5E-08 62.0 8.6 178 74-274 117-309 (376)
48 PRK04135 cofactor-independent 96.9 0.003 6.4E-08 61.2 7.2 69 193-275 265-333 (395)
49 COG3635 Predicted phosphoglyce 96.9 0.0028 6E-08 59.7 6.6 70 193-274 282-351 (408)
50 KOG4126 Alkaline phosphatase [ 96.7 0.0048 1E-07 60.4 7.6 77 192-276 325-401 (529)
51 TIGR03396 PC_PLC phospholipase 93.4 0.65 1.4E-05 48.7 10.6 174 77-274 146-340 (690)
52 PF11658 DUF3260: Protein of u 92.7 3.3 7.1E-05 41.3 13.5 192 61-278 197-413 (518)
53 COG3635 Predicted phosphoglyce 92.0 0.16 3.6E-06 48.2 3.7 55 59-113 3-67 (408)
54 TIGR03368 cellulose_yhjU cellu 91.1 4.1 8.8E-05 40.5 12.2 192 61-278 195-410 (518)
55 TIGR02535 hyp_Hser_kinase prop 89.2 0.54 1.2E-05 46.3 4.7 57 61-118 2-68 (396)
56 PRK04200 cofactor-independent 88.8 0.63 1.4E-05 45.8 4.8 57 61-118 2-68 (395)
57 PF07394 DUF1501: Protein of u 88.7 0.8 1.7E-05 45.3 5.6 61 213-277 246-306 (392)
58 PRK04024 cofactor-independent 87.6 0.8 1.7E-05 45.3 4.7 57 61-118 4-70 (412)
59 PRK04135 cofactor-independent 86.5 1.1 2.4E-05 43.7 4.9 59 59-118 7-74 (395)
60 TIGR00306 apgM 2,3-bisphosphog 82.0 1.6 3.5E-05 42.9 4.0 51 63-113 1-61 (396)
61 smart00098 alkPPc Alkaline pho 73.0 5.7 0.00012 39.4 4.9 91 60-167 1-105 (419)
62 PF07172 GRP: Glycine rich pro 70.9 5.9 0.00013 30.3 3.5 21 20-40 4-24 (95)
63 PF00245 Alk_phosphatase: Alka 64.2 2 4.4E-05 42.6 -0.2 90 60-167 2-104 (421)
64 PF14606 Lipase_GDSL_3: GDSL-l 56.7 28 0.00061 30.0 5.4 139 90-272 8-146 (178)
65 PRK05434 phosphoglyceromutase; 54.6 12 0.00026 38.2 3.3 42 395-439 462-504 (507)
66 PLN02538 2,3-bisphosphoglycera 53.4 13 0.00029 38.0 3.4 46 394-439 505-555 (558)
67 PF05991 NYN_YacP: YacP-like N 52.5 13 0.00029 31.7 2.8 31 242-275 77-107 (166)
68 COG0696 GpmI Phosphoglyceromut 50.6 15 0.00033 36.6 3.1 41 396-439 463-505 (509)
69 TIGR01307 pgm_bpd_ind 2,3-bisp 50.2 13 0.00029 37.6 2.8 43 394-438 454-498 (501)
70 COG3885 Uncharacterized conser 50.2 33 0.00071 30.6 4.8 34 238-276 143-176 (261)
71 PRK13366 protocatechuate 4,5-d 45.2 36 0.00079 31.9 4.7 35 239-275 28-62 (284)
72 PF06796 NapE: Periplasmic nit 42.8 51 0.0011 22.3 3.8 27 4-30 3-29 (56)
73 PRK13364 protocatechuate 4,5-d 42.1 36 0.00078 31.8 4.1 33 241-275 30-62 (278)
74 cd07950 Gallate_Doxase_N The N 39.2 44 0.00094 31.3 4.3 34 241-276 30-63 (277)
75 TIGR02049 gshA_ferroox glutama 39.2 1.7E+02 0.0036 28.4 8.0 64 210-276 207-270 (403)
76 PF00231 ATP-synt: ATP synthas 38.6 28 0.00061 32.8 2.9 17 261-277 74-90 (290)
77 cd07364 PCA_45_Dioxygenase_B S 37.8 51 0.0011 30.8 4.5 34 240-275 29-62 (277)
78 PHA02754 hypothetical protein; 36.5 83 0.0018 21.3 3.9 36 236-271 6-53 (67)
79 PRK05621 F0F1 ATP synthase sub 35.7 43 0.00093 31.4 3.7 13 265-277 77-89 (284)
80 cd07369 PydA_Rs_like PydA is a 34.9 65 0.0014 30.9 4.7 33 240-274 27-59 (329)
81 cd07368 PhnC_Bs_like PhnC is a 34.9 1E+02 0.0022 28.8 6.0 36 239-276 26-61 (277)
82 cd07949 PCA_45_Doxase_B_like_1 34.3 50 0.0011 30.8 3.8 34 241-276 30-63 (276)
83 PRK13365 protocatechuate 4,5-d 33.8 53 0.0012 30.7 3.9 33 241-275 30-62 (279)
84 TIGR01146 ATPsyn_F1gamma ATP s 31.2 59 0.0013 30.5 3.8 14 265-278 78-91 (287)
85 PF05827 ATP-synt_S1: Vacuolar 29.3 89 0.0019 29.2 4.7 52 211-272 126-177 (282)
86 PRK11901 hypothetical protein; 29.3 1.4E+02 0.003 28.4 5.7 12 2-13 14-25 (327)
87 PF07765 KIP1: KIP1-like prote 29.2 1.1E+02 0.0024 22.1 3.9 31 228-258 7-37 (74)
88 PRK13424 F0F1 ATP synthase sub 29.1 62 0.0013 30.5 3.6 13 265-277 79-91 (291)
89 PF06072 Herpes_US9: Alphaherp 27.7 21 0.00045 24.3 0.1 10 11-20 24-33 (60)
90 COG4077 Uncharacterized protei 27.3 1.1E+02 0.0024 24.7 4.0 34 231-264 69-102 (156)
91 TIGR03323 alt_F1F0_F1_gam alte 27.2 81 0.0017 29.6 4.0 13 265-277 74-86 (285)
92 PRK13427 F0F1 ATP synthase sub 26.9 69 0.0015 30.1 3.4 14 265-278 79-92 (289)
93 cd07367 CarBb CarBb is the B s 26.2 1.1E+02 0.0024 28.4 4.6 34 240-275 23-56 (268)
94 PRK14111 F0F1 ATP synthase sub 25.4 47 0.001 31.3 2.0 16 263-278 78-94 (290)
95 COG4102 Uncharacterized protei 25.1 2.3E+02 0.0051 27.2 6.3 64 209-276 264-328 (418)
96 PRK13422 F0F1 ATP synthase sub 24.6 70 0.0015 30.3 3.0 13 265-277 78-90 (298)
97 PRK13425 F0F1 ATP synthase sub 24.3 1.2E+02 0.0027 28.5 4.6 14 265-278 79-92 (291)
98 PF10673 DUF2487: Protein of u 24.2 2.5E+02 0.0055 23.2 5.8 29 245-275 70-98 (142)
99 PRK13423 F0F1 ATP synthase sub 24.1 76 0.0016 29.8 3.2 14 265-278 78-91 (288)
100 cd07366 3MGA_Dioxygenase Subun 24.0 99 0.0021 29.7 3.9 29 245-275 72-100 (328)
101 PF14556 AF2331-like: AF2331-l 21.3 1.4E+02 0.003 21.8 3.2 21 250-271 10-30 (93)
102 PRK13373 putative dioxygenase; 21.0 1.6E+02 0.0035 28.3 4.6 35 240-276 27-61 (344)
103 PRK13426 F0F1 ATP synthase sub 20.2 1.7E+02 0.0037 27.5 4.7 13 265-277 78-90 (291)
104 PF12249 AftA_C: Arabinofurano 20.1 1.1E+02 0.0024 26.1 2.9 52 216-276 10-64 (178)
105 PF11807 DUF3328: Domain of un 20.0 1.3E+02 0.0028 26.3 3.8 20 240-259 159-178 (217)
No 1
>KOG2645 consensus Type I phosphodiesterase/nucleotide pyrophosphatase [General function prediction only]
Probab=100.00 E-value=1.4e-62 Score=467.20 Aligned_cols=379 Identities=46% Similarity=0.839 Sum_probs=339.2
Q ss_pred ccCCCCcEEEEEeCCCCCCCCCCCCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccCCCCCC
Q 042800 55 KKLERPVVILVSSDGFRFGYQFKTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFVEPRTG 134 (450)
Q Consensus 55 ~~~~~pnvvlI~iD~l~~~~~~~~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~~~~~~ 134 (450)
....+|++++|++||++++|+.+..+|+|++|++.|+..++ +.++||+.|.|+|.||+||+||..|||++|.++++...
T Consensus 18 ~~~~~p~lllis~DGFr~~yl~~~~~p~i~~l~~~gv~~~~-~~pvFpT~TfPNhySivTGlype~HGIv~N~~~Dp~~~ 96 (418)
T KOG2645|consen 18 SGSTHPKLLLISFDGFRADYLYKVLTPNIHKLASCGVWVTY-VIPVFPTKTFPNHYSIVTGLYPESHGIVGNYFFDPKTN 96 (418)
T ss_pred ccCCCCCEEEEEecccchhhccCccCccHHHHHhccccccE-EEecCcccccCCcceeeecccchhceeeceeeeccccc
Confidence 33457899999999999999988999999999999999996 99999999999999999999999999999999999999
Q ss_pred CcccCC---CCCCCcccCCcchHhHHhcCCceEEEeecCccccCCCccCCCcccccCCCCCChHHHHHHHHhcccCCCCC
Q 042800 135 DQFSPA---RHEPKWWLGEPLWETVANQGLKAAAYFWAGSEVRKGSWDCPKGYCMKYNSSVPFEERVDTVLSYFDLPSDE 211 (450)
Q Consensus 135 ~~~~~~---~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 211 (450)
..+... ...+.||.++|+|.+..++|.++++++|||+++...++ .+.+...|+...+++++++.+++ ++...++
T Consensus 97 ~~F~~~~~~~~~~~ww~~ePiW~t~~~~~~kaa~~~wpg~~v~~~~~--~~~~~~~~n~~~~~~~~~~~i~~-~~~~~~e 173 (418)
T KOG2645|consen 97 KEFDLFTNSDLEPFWWNGEPIWVTARKQGRKVATFFWPGCEVEIHGY--IPDPYDIYNQSVPLEERADTVLD-LDLPEKE 173 (418)
T ss_pred cccccCCCccccccccCCCcchhhhhhcCCceeEEecCCcccccccc--cccccccccccccHHHHHHHHhc-ccccccc
Confidence 888877 47899999999999988899999999999999988777 55667788889999999999998 6667788
Q ss_pred CCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCCCCCCcEEEccccCCc
Q 042800 212 IPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVGTCEDKVIFLDDLAPW 291 (450)
Q Consensus 212 ~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~~~~~~~~~l~~~~~~ 291 (450)
+|.|+.+|+.+||..||.+|+.+++...+++.+|..||.|++.|+++++.+++.|||+|||||++++.+..+.++.+..
T Consensus 174 ~p~l~~~Y~~~pD~~gh~~Gp~~~~v~~~l~~vD~~i~~L~~~Lk~r~L~~~vNvIi~SDHGM~~~~~~~~~~~d~l~~- 252 (418)
T KOG2645|consen 174 RPDLLLLYVEEPDHSGHRYGPDSPEVEKALKEVDDFIGYLIKGLKDRNLFEDVNVIIVSDHGMTDICDKKIIWVDYLPD- 252 (418)
T ss_pred CCCceEEeccCCCccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHccccccceEEEeecCCccccccceeehhhhhhh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999985445555555422
Q ss_pred CCCCCCeEeeccceEEEeCCCCCCHHHHHHHHHhhhccCcccCCcceEEEecCCCcccccCCCCCCCCCeEEEecCCeEE
Q 042800 292 VKIPADWVHSYFPLLAIWPPAGHNLTEIVQQMNQGLDSGKVEKGKSLRVYLKEELPARLHYAASDRIPPIIGMVDEGFTV 371 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~~~~~~g~~~ 371 (450)
...+....+|...|+|......+++++.|.+... .. +.++||+++++|+|+||..++|++++++++++||.+
T Consensus 253 ---~~~~~~~~gp~~~i~~~~~~~~~ev~~~l~~~~~----~~-~~~kvy~k~dlP~r~hy~~~~ri~~i~l~~d~g~sv 324 (418)
T KOG2645|consen 253 ---LVSTVVDEGPVARIRPKKDEIVKEVYANLSCAKP----EH-EHVKVYLKEDLPKRLHYKKSDRIGPIVLLADPGWSV 324 (418)
T ss_pred ---hhhhhcccccceEEEecccccHHHHHHhhhccCC----Cc-cceeccccccCchhhcccccccCCceEEEecCcEEE
Confidence 2234556789999999655567778888776532 12 679999999999999999999999999999999999
Q ss_pred EeeccCCCccCCCcCCCCCCCCcccceeeccCCCCCCCcccCCccchhHHHHHHHhcCCCCCCCCCCCccccccCC
Q 042800 372 AQRRTEGARYCGGAHGYDNEYFSMRSIFIGHGPRFARGRKVPSFENVQIYNVITSLLNIKGAPNNGSKSFPQSILL 447 (450)
Q Consensus 372 ~~~~~~~~~~~~g~HG~~~~~~~~~~~f~~~Gp~~~~~~~~~~~~~~Diapti~~llgi~~~~~~G~~~~~~~~~~ 447 (450)
+.+.... ....|.|||++...+|+++|+|+||.|+++..++++++|||++.||++|||++.++|||.+.+..+|+
T Consensus 325 ~~~~~~~-~~~~g~hGydn~~~~M~~if~a~Gp~F~~~~~~~pfenv~vyn~~~~ll~l~~~pnNGt~~~~~~lL~ 399 (418)
T KOG2645|consen 325 VKSETDD-PEALGDHGYDNNFSDMRTIFVGHGPSFKKNTKVPPFENVEIYNLLCDLLGLRPAPNNGTHGFLRSLLK 399 (418)
T ss_pred Eeccccc-hhhhccccccccchhhhhhhhhcccccCCCcccCCccceehhhhhhhhcCCccCCCCCCccchhhhhc
Confidence 9887765 35689999999999999999999999999999999999999999999999998899999999999996
No 2
>PF01663 Phosphodiest: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro: IPR002591 This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase I / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulphate bonds in NAD, deoxynucleotides and nucleotide sugars []. Another member of this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity []. The alignment encompasses the active site [, ]. Also present within this family is 60 kDa Ca2+-ATPase from Myroides odoratus []. This signature also hits a number of ethanolamine phosphate transferase involved in glycosylphosphatidylinositol-anchor biosynthesis.; GO: 0003824 catalytic activity; PDB: 2XRG_A 2XR9_A 3T02_A 3T01_A 3SZZ_A 3SZY_A 3T00_A 3NKM_A 3NKN_A 3NKR_A ....
Probab=100.00 E-value=1.8e-37 Score=304.12 Aligned_cols=319 Identities=31% Similarity=0.561 Sum_probs=218.5
Q ss_pred EEEEEeCCCCCCCCCC--CCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccCCCCCCCc--c
Q 042800 62 VILVSSDGFRFGYQFK--TPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFVEPRTGDQ--F 137 (450)
Q Consensus 62 vvlI~iD~l~~~~~~~--~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~~~~~~~~--~ 137 (450)
||+|++||++++++.+ ..+|||.+|+++|+.+.+ ..+++|+.|.|+|+||+||.+|.+|||++|.++++..... +
T Consensus 1 vv~i~iDGl~~~~l~~~~~~~p~l~~l~~~G~~~~~-~~s~~Ps~T~~~~~si~TG~~P~~HGi~~~~~~~~~~~~~~~~ 79 (365)
T PF01663_consen 1 VVVIGIDGLRPDLLDRYIGNLPNLKRLAEEGVYGPN-LRSVFPSTTAPNWASILTGAYPEEHGIIGNYWYDPKTGKESTF 79 (365)
T ss_dssp EEEEEETT-BHHHHHHHHTSSHHHHHHHHHSEEECE-EE-SSSBSHHHHHHHHHHSS-HHHHS--SSCEEETTTTEEECE
T ss_pred cEEEEEeCCCHHHHHhHhccCHHHHHHHHCCCCCCC-ceecCCCCcccchhhhhcCccccccCCccccccCccccccccc
Confidence 7999999999997766 899999999999999986 8889999999999999999999999999999988766543 3
Q ss_pred cCCCCCCCcccCCcchHhHHhcCCceEEEeecCccccCCCcc----------------CCCccc-ccCCCC--CC-----
Q 042800 138 SPARHEPKWWLGEPLWETVANQGLKAAAYFWAGSEVRKGSWD----------------CPKGYC-MKYNSS--VP----- 193 (450)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~----------------~~~~~~-~~~~~~--~~----- 193 (450)
........+....++|+.+.++|.+++.++||+.......+. .+..+. ..+... .+
T Consensus 80 ~~~~~~~~~~~~~~i~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~ 159 (365)
T PF01663_consen 80 WDELGDSGDVDSPPIWESLAKAGKKVAVFGWPGTHPPYPGLNGILDPSFGTPDTYRYYSPKSLSDELYDGQGDNPLYLAW 159 (365)
T ss_dssp ESSSSGGGCCCCHEHHHHHHHTT-EEEECS-CTTSSHHHCCTCCCCTCTT-EESSTCCCCSCCHHHHHHHC-HHCHSTCH
T ss_pred cccccccccccchhHHHHHHHcCCceeeeccccccccccccccccccccccccccccccccccccchhhccccccccccc
Confidence 322223334445699999999999999998987643322110 011110 000000 01
Q ss_pred -------hHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEE
Q 042800 194 -------FEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTV 266 (450)
Q Consensus 194 -------~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~v 266 (450)
..+.+..+++.+ .++.+|+|++++|.++|..+|.+|++++++.++++.+|++||+|++.|++.++.++|.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~l--~~~~~pdl~~~~~~~~D~~~H~~g~~s~~~~~~~~~~D~~ig~l~~~l~~~~~~~~~~i 237 (365)
T PF01663_consen 160 FFEQSPELDEWITDAAEYL--IQKERPDLIFVYFPEPDHIGHRYGPDSPEIEDAYRRIDQAIGRLLEALDENGLLEDTNI 237 (365)
T ss_dssp HHSSSHHHHHHHHHHHHHH--HHTTTESEEEEEEECCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTT-TTTEEE
T ss_pred cccchHHHHHHHHHHHHHH--HhhCCCCEEEEEecCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEE
Confidence 111112122221 13567999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCcEEEccccC---CcCCCCC---CeE-eeccceEEEeCC-CCCCHHHHHHHHHhhhccCcccCCcce
Q 042800 267 ILLGDHGMVGTCEDKVIFLDDLA---PWVKIPA---DWV-HSYFPLLAIWPP-AGHNLTEIVQQMNQGLDSGKVEKGKSL 338 (450)
Q Consensus 267 ivtsDHG~~~~~~~~~~~l~~~~---~~~~~~~---~~~-~~~~~~~~~~p~-~~~~~~~~~~~l~~~l~~~~~~~~~~~ 338 (450)
||+|||||.....++.+++++++ ++..++. ... .....+.+++++ .....+++++.|.+. .......
T Consensus 238 iv~SDHG~~~~~~~~~i~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~~~L~~~-----~~~~~~~ 312 (365)
T PF01663_consen 238 IVTSDHGMTPVPDEKVIDLNDYLRQNGLLKLDPSDINEDYVGEGRMAYIYVKDDEEVIDEVYEALKGL-----QDPQPGI 312 (365)
T ss_dssp EEEES---EEECTTSEEEHHHCCECCCCCHSHGCTCEEECEESBSEEEEEECHTTSHHHHHHHHHCTS------STTTTE
T ss_pred EEEccCcccccCcCceecHHHhhhhhhhhhcccccceeeeeecCceeeEecccchhhHHHHHHHHHhh-----ccCCCce
Confidence 99999999998667889999885 2222211 111 456677888887 333455666666543 1123456
Q ss_pred EEEe---cCCCcccccCCCCCCCCCeEEEecCCeEEEeeccCCCccCCCcCCCC
Q 042800 339 RVYL---KEELPARLHYAASDRIPPIIGMVDEGFTVAQRRTEGARYCGGAHGYD 389 (450)
Q Consensus 339 ~v~~---~~~~~~~~~~~~~~~~~di~~~~~~g~~~~~~~~~~~~~~~g~HG~~ 389 (450)
.++. +++++++++|. .+|+||+++++++||.+............|+|||+
T Consensus 313 ~~~~~~~~~~l~~~~~~~-~~r~gdlv~~~~~g~~~~~~~~~~~~~~~g~HG~~ 365 (365)
T PF01663_consen 313 KVYLTVPRSDLPERYHYG-SDRSGDLVVIAKPGYSFVTKDTTKEYKPKGMHGYD 365 (365)
T ss_dssp EEEEEHHGGGSHGGGTHC-STTS-SEEEEE-TTEEEESHCSTSSSS-EEE-BS-
T ss_pred EEEecccHHHHHHHhCCC-CCCcCCEEEEEeCCEEEEeCCCCCCCCCCccCCCC
Confidence 6776 66788777776 78999999999999999887652224567999985
No 3
>TIGR02335 hydr_PhnA phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.
Probab=100.00 E-value=2.9e-35 Score=286.67 Aligned_cols=337 Identities=20% Similarity=0.239 Sum_probs=228.5
Q ss_pred CCcEEEEEeCCCCCCCCCC----CCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccCCCCCC
Q 042800 59 RPVVILVSSDGFRFGYQFK----TPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFVEPRTG 134 (450)
Q Consensus 59 ~pnvvlI~iD~l~~~~~~~----~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~~~~~~ 134 (450)
+.+||+|++||++++++.+ ..+|||++|+++|.... ..++||++|.|+++||+||++|.+|||++|.++++..+
T Consensus 12 ~~~vvvi~vDGl~~~~l~~~~~~g~~P~L~~l~~~G~~~~--~~s~~Ps~T~p~~tSi~TG~~P~~HGI~gn~~~dp~~~ 89 (408)
T TIGR02335 12 QRPTVVICVDGCDPEYINRGIADGVAPFIAELTGFGTVLT--ADCVVPSFTNPNNLSIVTGAPPAVHGICGNYYLDQDTG 89 (408)
T ss_pred CCCEEEEEeCCCCHHHHHhhhhcCCCchHHHHHhcCceee--ccCCCCCcccccceeeecCCChhhCceecceEEecCCC
Confidence 4579999999999997644 58999999999998764 67899999999999999999999999999999998776
Q ss_pred CcccCCCCCCCcccCCcchHhHHhcCCceEEEeecCccccCCCccCCCcc-c-----------------ccCCC---CC-
Q 042800 135 DQFSPARHEPKWWLGEPLWETVANQGLKAAAYFWAGSEVRKGSWDCPKGY-C-----------------MKYNS---SV- 192 (450)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------~~~~~---~~- 192 (450)
+.+.+ ...+|+..+|+|+.++++|.+++.+.++.......++..+... . ..+.+ ..
T Consensus 90 ~~~~~--~~~~~~~~pTi~e~a~~aG~~ta~v~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~g~~~~~~~vg~~~~~~ 167 (408)
T TIGR02335 90 EEIMM--TDAKYLRAPTILGEMSKAGVLTAVVTAKDKLRKVLGHQLKGICFSSEKADQVNLEEHGVENILALVGRPRPDV 167 (408)
T ss_pred ceEEE--eChhhhCCchHHHHHHHcCCeEEEEecccccccccCcccccccccccccccccccccchHHHHHHhCCCCCcc
Confidence 55543 2478888999999999999999988765322111111111000 0 00000 00
Q ss_pred ---ChHH-HHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEE
Q 042800 193 ---PFEE-RVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVIL 268 (450)
Q Consensus 193 ---~~~~-~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~viv 268 (450)
...+ .++.++..+ ++.+|+|+++ .++|..+|.+|++|+++.++++.+|+.|++|++. +|+||+
T Consensus 168 ~~~~~~~~~~~~a~~~l---~~~~pdllyl--~~~D~~gH~~Gp~S~e~~~~~~~lD~~l~~L~~~--------~~~vvv 234 (408)
T TIGR02335 168 YSADLSLFVLDAGLSLL---TNERPDLMYL--STSDYVQHKHAPGEPESNAFYAAMDSRFKRYHEQ--------GAIVAI 234 (408)
T ss_pred chHHHHHHHHHHHHHHH---hccCCcEEEe--cCcCccccccCCCCHHHHHHHHHHHHHHHHHHHC--------CCEEEE
Confidence 1111 135555566 3568999764 6999999999999999999999999999998872 699999
Q ss_pred EcCCCCCCCCCC----cEEEccccCC-cCCCC-CCe--------Eee---ccceEEEeCCCCCCHHHHHHHHHhhhccCc
Q 042800 269 LGDHGMVGTCED----KVIFLDDLAP-WVKIP-ADW--------VHS---YFPLLAIWPPAGHNLTEIVQQMNQGLDSGK 331 (450)
Q Consensus 269 tsDHG~~~~~~~----~~~~l~~~~~-~~~~~-~~~--------~~~---~~~~~~~~p~~~~~~~~~~~~l~~~l~~~~ 331 (450)
||||||.+.... +...+++++. ..... ..+ +.. .+.++.++.++..+.+++.+.+..
T Consensus 235 taDHG~~~~~~~~~~~nv~~l~~~L~~~~g~~~~~~i~~~~~~~V~~~~~~g~~~~~y~~~~~~~~~v~~~l~~------ 308 (408)
T TIGR02335 235 TADHGMNAKTDAIGRPNILFLQDLLDAQFGAGRARVICPITDPFVRHHGALGSFVRVYLRDPVDIRAMMDFAAG------ 308 (408)
T ss_pred ECCCCCccCcccccCccHHHHHHHHHHHhCCCcceeeecccchhhccccccCCeeeeecCCHHHHHHHHHHHhc------
Confidence 999999987531 1223332221 00100 011 111 134555665543323344444432
Q ss_pred ccCCcceEEEecCCCcccccCCCCCCCCCeEEEecCCeEEEeeccCCCccCCC-----cCCCCCCCCcccceeeccCCCC
Q 042800 332 VEKGKSLRVYLKEELPARLHYAASDRIPPIIGMVDEGFTVAQRRTEGARYCGG-----AHGYDNEYFSMRSIFIGHGPRF 406 (450)
Q Consensus 332 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~~~~~~g~~~~~~~~~~~~~~~g-----~HG~~~~~~~~~~~f~~~Gp~~ 406 (450)
.++...|+.++++.+.+++ ..+|++|++++.++||.+............| +||+++ ||..+|+...|--
T Consensus 309 --~~gva~V~tr~ea~~~~g~-~~~RsGDvvv~a~~g~~~~~~~~~~~~~~~~~~~~~~HG~~~---e~~vp~~~~~~~~ 382 (408)
T TIGR02335 309 --IAGVEAVLTRSQACQRFEL-PEDREGDFVVLGERLTVLGSRADKHDLSGLGDHPLRSHGGVS---EQKVPFILSRPLV 382 (408)
T ss_pred --CCCHHHHhCHHHHHHhcCC-CCCCcccEEEEecCCEEEeecccccccccccCcCcccCCCcc---cCcCceEEEeccc
Confidence 2356778999988775555 4689999999999999887653322123345 999998 7889999888753
Q ss_pred CC---CcccCCccchhHHHHH
Q 042800 407 AR---GRKVPSFENVQIYNVI 424 (450)
Q Consensus 407 ~~---~~~~~~~~~~Diapti 424 (450)
.. .......+|.||.-.-
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~ 403 (408)
T TIGR02335 383 RDYRERAAPGRLRNFDIFDFA 403 (408)
T ss_pred chhcccccccccccccHHHHH
Confidence 21 1223346777776543
No 4
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=100.00 E-value=3.6e-34 Score=289.36 Aligned_cols=200 Identities=20% Similarity=0.259 Sum_probs=138.6
Q ss_pred CCCcEEEEEeCCCCCCC----C--CCCCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccCCC
Q 042800 58 ERPVVILVSSDGFRFGY----Q--FKTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFVEP 131 (450)
Q Consensus 58 ~~pnvvlI~iD~l~~~~----~--~~~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~~~ 131 (450)
++||||||++|++|++. . ....|||||+||++|+.|+|+|++ .++|+|||+||+||+||.+||++.|....+
T Consensus 1 ~rPNIllI~~Dd~r~d~lg~~G~~~~~~TPnLD~LA~eGv~F~nay~~--~p~C~PSRaSllTG~yp~~~G~~~~~~~l~ 78 (500)
T TIGR03417 1 TRPNILILMADQLNGTLLPDYGPARWLHAPNLKRLAARSVVFDNAYCA--SPLCAPSRASFMSGQLPSRTGAYDNAAEFP 78 (500)
T ss_pred CCCeEEEEEeCCCCccccccCCCCCcCCCCcHHHHHHhCceecccccC--CCccHHHHHHHHHCCCHHhcCcccchhhcC
Confidence 37999999999999983 3 246899999999999999999988 589999999999999999999987631111
Q ss_pred CCCCcccCCCCCCCcccCCcchHhHHhcCCceEEEe-ec--------Ccccc--------CCC----ccCCC---ccccc
Q 042800 132 RTGDQFSPARHEPKWWLGEPLWETVANQGLKAAAYF-WA--------GSEVR--------KGS----WDCPK---GYCMK 187 (450)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~--------~~~~~--------~~~----~~~~~---~~~~~ 187 (450)
. ...++.+.|+++||.|+.+. |. |.... ..+ |.... .+...
T Consensus 79 ~---------------~~~tl~~~L~~aGY~T~~~GK~H~~~~~~~~GF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (500)
T TIGR03417 79 S---------------DIPTYAHYLRRAGYRTALSGKMHFCGPDQLHGFEERLTTDIYPADFGWTPDWRKPGERIDWYHN 143 (500)
T ss_pred c---------------CCCCHHHHHHHCCCeEEEeccccccCCccccCcccccccccCccccCCCccccccccccccccc
Confidence 0 12456688888888886653 10 00000 000 00000 00000
Q ss_pred C-----C------CCCCh-HHHHHHHHhcccC---CCCCCCcEEEEcccCCCCCCCC-------CC--------------
Q 042800 188 Y-----N------SSVPF-EERVDTVLSYFDL---PSDEIPAFTALYFEDPDSHGHV-------VG-------------- 231 (450)
Q Consensus 188 ~-----~------~~~~~-~~~~~~~~~~l~~---~~~~~P~fl~~~~~~~d~~~h~-------~g-------------- 231 (450)
. . ....+ ...++.+++|+.. .+.++|||++++|..||.+... |.
T Consensus 144 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~kPFFl~vs~~~PH~P~~~p~~y~~~y~~~~~~~p~~~~~~~ 223 (500)
T TIGR03417 144 MGSVTGAGPCERTNQLDYDDEVAFHARQKLYDLARGKDARPFCLTVSFTHPHDPYVIRRKYWDLYEDCEILMPEVAIPYA 223 (500)
T ss_pred ccccccCCcCcccccccCCHHHHHHHHHHHHHHhhccCCCCeEEEecCCCCcCCCcCCHHHHhhcCcccCCCCCCCCccc
Confidence 0 0 00011 1244566666642 2457899999999999985321 00
Q ss_pred ---C---------------C--------cHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCC
Q 042800 232 ---P---------------D--------DVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGM 274 (450)
Q Consensus 232 ---~---------------~--------~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~ 274 (450)
+ . ...|+++++++|.+||+|++.|++.|++|||+||||||||.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~v~~~D~~iG~il~~L~~~g~~dnTivvf~sDHG~ 292 (500)
T TIGR03417 224 EQDPHSQRLLDACDLWNFPITDEQIRRARRAYFGAISYLDDKIGELLQTLEETRQADDTIVLFTSDHGD 292 (500)
T ss_pred ccChhhhhhhhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcEEEEECCCch
Confidence 0 0 12488999999999999999999999999999999999997
No 5
>PRK13759 arylsulfatase; Provisional
Probab=100.00 E-value=6.2e-32 Score=272.06 Aligned_cols=201 Identities=20% Similarity=0.286 Sum_probs=140.0
Q ss_pred CCCcEEEEEeCCCCCCCC-----CCCCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccCCCC
Q 042800 58 ERPVVILVSSDGFRFGYQ-----FKTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFVEPR 132 (450)
Q Consensus 58 ~~pnvvlI~iD~l~~~~~-----~~~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~~~~ 132 (450)
++||||+|++|++|++.+ ....||||++|+++|+.|+|+|++ .+.|+|||+||+||+||.+||+.+|....+.
T Consensus 5 ~rPNIl~I~~Ddlr~d~l~~~G~~~~~TPnld~La~~G~~F~nay~~--~p~c~psr~sl~TG~yp~~~g~~~~~~~~~~ 82 (485)
T PRK13759 5 KKPNIILIMVDQMRGDCLGCNGNKAVETPNLDMLASEGYNFENAYSA--VPSCTPARAALLTGLSQWHHGRVGYGDVVPW 82 (485)
T ss_pred CCCCEEEEEECCCCHHHHHhcCCCcCCCccHHHHHhcCceeeceecC--CCcchhhHHHHHhcCChhhcCcccccccccc
Confidence 489999999999999832 246899999999999999999987 5899999999999999999999765321110
Q ss_pred CCCcccCCCCCCCcccCCcchHhHHhcCCceEEEe-e---cCc---ccc----CCCc------------cCCCccc----
Q 042800 133 TGDQFSPARHEPKWWLGEPLWETVANQGLKAAAYF-W---AGS---EVR----KGSW------------DCPKGYC---- 185 (450)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~---~~~---~~~----~~~~------------~~~~~~~---- 185 (450)
....++.+.++++||.|+.+. | +.. ++. ..++ .....+.
T Consensus 83 --------------~~~~tl~~~l~~~GY~T~~~GK~h~~~~~~~~gfd~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 148 (485)
T PRK13759 83 --------------NYKNTLPQEFRDAGYYTQCIGKMHVFPQRNLLGFHNVLLHDGYLHSGRNEDKSQFDFVSDYLAWLR 148 (485)
T ss_pred --------------cccchHHHHHHHcCCeeEEecccccCCCcccCCccceeccccccccccccCcccccccchHHHHhh
Confidence 012456677788888776542 1 100 000 0000 0000000
Q ss_pred -------ccCC----------C-----C-C--ChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCC-------CCCC
Q 042800 186 -------MKYN----------S-----S-V--PFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHV-------VGPD 233 (450)
Q Consensus 186 -------~~~~----------~-----~-~--~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~-------~g~~ 233 (450)
..+. . . . .....++.+++||+..+.++|||+++.+..||.+... |...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~kPfFl~v~~~~pH~P~~~p~~~~~~y~~~ 228 (485)
T PRK13759 149 EKAPGKDPDLTDIGWDCNSWVARPWDLEERLHPTNWVGSESIEFLRRRDPTKPFFLKMSFARPHSPYDPPKRYFDMYKDA 228 (485)
T ss_pred hhcCCCCCcccccccccccccccccccccceeccHHHHHHHHHHHHhCCCCCCeEEEeCCCCCcCCCCCCHHHHHhcccc
Confidence 0000 0 0 0 0112357888998754457899999999999985321 1000
Q ss_pred --------------------------------------cHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCC
Q 042800 234 --------------------------------------DVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGM 274 (450)
Q Consensus 234 --------------------------------------~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~ 274 (450)
...|.++++++|.+||+|++.|++.|++|||+||||||||.
T Consensus 229 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~~D~~iG~l~~~l~~~g~~dnTiiv~tsDHG~ 307 (485)
T PRK13759 229 DIPDPHIGDWEYAEDQDPEGGSIDALRGNLGEEYARRARAAYYGLITHIDHQIGRFLQALKEFGLLDNTIILFVSDHGD 307 (485)
T ss_pred CCCCCCCCchhhhcccccccccchhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCeEEEEECCCcc
Confidence 13488999999999999999999999999999999999997
No 6
>KOG3867 consensus Sulfatase [General function prediction only]
Probab=99.96 E-value=8.8e-29 Score=240.93 Aligned_cols=218 Identities=22% Similarity=0.250 Sum_probs=137.3
Q ss_pred CCCCcEEEEEeCCCCC-C---CCCC-CCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccCC-
Q 042800 57 LERPVVILVSSDGFRF-G---YQFK-TPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFVE- 130 (450)
Q Consensus 57 ~~~pnvvlI~iD~l~~-~---~~~~-~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~~- 130 (450)
.++||||+|++||+++ | |.++ ..|||||+||++|+.|+|+|++ ++.|+|||++++||+||.+.|+.+...+.
T Consensus 27 ~~~PNillIlaDDlG~gDlg~yG~~~i~TPniD~LA~~Gv~f~n~~~a--~s~CtPSRaalLTGr~pirtGm~~~~~~r~ 104 (528)
T KOG3867|consen 27 TDPPNILLILADDLGWGDLGCYGNKTIRTPNIDRLAAEGLLFTNAYAA--VSLCSPSRAALLTGRYPIRTGMYHSVIYRV 104 (528)
T ss_pred CCCCCEEEEEEccCCCcccccCCCcccCCCCHHHHHhcccceeccccc--ccccCchHHHHhcCCCccccccccceeEee
Confidence 3599999999999999 5 4444 7899999999999999999988 68999999999999999999998774441
Q ss_pred ---CCCC--------------CcccCCCCCCCcccCCcch-HhHHhcCCceEEEeecCcccc---CCCccCCCc---ccc
Q 042800 131 ---PRTG--------------DQFSPARHEPKWWLGEPLW-ETVANQGLKAAAYFWAGSEVR---KGSWDCPKG---YCM 186 (450)
Q Consensus 131 ---~~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~~~~~~~~~~~---~~~~~~~~~---~~~ 186 (450)
...+ +.-+.+...||||++..-- ....++||+............ ...+..... +..
T Consensus 105 ~~~~~~gglP~~E~tlae~l~~~GY~T~liGKWHLG~~~~~~~P~~rGFd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (528)
T KOG3867|consen 105 HHNFSPGGLPLNETTLAEILQEAGYSTGLIGKWHLGRSDPCYHPTNRGFDYFYGEPELHSPLLGPRDVLDVPEQALQFLG 184 (528)
T ss_pred ccCCCCCCcccchhHHHHHHHhCCccccccccccCCCCCCCcCCcccCccccccccccccccccccccccccchhhhhhc
Confidence 1110 0112234677887772111 123445555422110000000 000000000 000
Q ss_pred cCCCC-CCh------------------HHHHHHHHhcccC-CCCCCCcEEEEcccCCCCC-----CCCCC----------
Q 042800 187 KYNSS-VPF------------------EERVDTVLSYFDL-PSDEIPAFTALYFEDPDSH-----GHVVG---------- 231 (450)
Q Consensus 187 ~~~~~-~~~------------------~~~~~~~~~~l~~-~~~~~P~fl~~~~~~~d~~-----~h~~g---------- 231 (450)
..... ..+ ....+.....++. ...++|+|++......|.. .|...
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~~l~v~~p~~~~~~f~~ 264 (528)
T KOG3867|consen 185 KLKVSAKPFFLREGLHVPHRPGWYSSTGLPTFGACYLMRNHGLSEQPMFLYWAPPAAHKEAMDSPLHVHVPLFTPKTFAG 264 (528)
T ss_pred ccCccccchhhhhhcccccccCCccccccccchhhhhhhccCcCCCCceeeccchhhcccccccccccCccccCCccccc
Confidence 00000 000 0011112222222 1467899999988777763 22221
Q ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCC
Q 042800 232 -PDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVG 276 (450)
Q Consensus 232 -~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~ 276 (450)
.....|.++|.++|..||+++++|++.|+++||+|+||||||...
T Consensus 265 ~s~~~~y~~~V~~mD~~VG~ildaL~~~gl~nnTiv~FtSDnG~~~ 310 (528)
T KOG3867|consen 265 RSKRGLYGDMVSEMDWSVGRILDALDDLGLANNTLVIFTSDNGGPL 310 (528)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEeCCCCccc
Confidence 123568999999999999999999999999999999999999954
No 7
>KOG3731 consensus Sulfatases [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3.5e-28 Score=225.04 Aligned_cols=271 Identities=23% Similarity=0.368 Sum_probs=181.1
Q ss_pred CCcEEEEEeCCCCCCCCC-CCCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccCCCCCCCcc
Q 042800 59 RPVVILVSSDGFRFGYQF-KTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFVEPRTGDQF 137 (450)
Q Consensus 59 ~pnvvlI~iD~l~~~~~~-~~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~~~~~~~~~ 137 (450)
+||||+|+.||.+-.+.. ....|.++-+.+.|..|.++|.+ .+.|+|+|.|++||+||++|+++.|.-.-
T Consensus 34 ~PNvIlvLTDDqD~eLGsm~vm~kt~~~~~dgg~~Fi~aYvt--tslCcPSRnSiLTGky~hnhhv~tnn~nc------- 104 (541)
T KOG3731|consen 34 PPNVILVLTDDQDVELGSMAVMFKTLTIMLDGGAHFISAYVT--TSLCCPSRNSILTGKYVHNHHVYTNNENC------- 104 (541)
T ss_pred CCCEEEEEccCcchhcccccccchHHHHHhcCCceEEecccC--ccccccccchhhhcccccccccccccccc-------
Confidence 599999999999866543 45789999999999999999988 59999999999999999999998772111
Q ss_pred cCCCCCCCcc---cCCcchHhH-HhcCCceEEEee---c--CccccCCCccCCCcc---cccCC-------------CCC
Q 042800 138 SPARHEPKWW---LGEPLWETV-ANQGLKAAAYFW---A--GSEVRKGSWDCPKGY---CMKYN-------------SSV 192 (450)
Q Consensus 138 ~~~~~~~~~~---~~~~~~~~~-~~~G~~~~~~~~---~--~~~~~~~~~~~~~~~---~~~~~-------------~~~ 192 (450)
....|+ ...++...+ .++||+|+.+.- + ++.+ .-+|...... ...|+ ...
T Consensus 105 ----ss~~Wq~~he~~t~~~~l~~~~GYrT~~~GKylney~gsyi-PpgW~ew~~l~knskfyNytv~~Ng~~~khg~~y 179 (541)
T KOG3731|consen 105 ----SSPSWQADHEKRTFAVYLAIDQGYRTAFFGKYLNEYNGSYI-PPGWSEWAGLIKNSKFYNYTVCKNGIKEKHGSDY 179 (541)
T ss_pred ----CchhHhhhhccCchhhhhhhhhceeeecchhhccccCcccC-CCCchhhhccccccchhcchhhcCcccccccccc
Confidence 123342 234444444 459999966421 1 1111 1112111000 00000 001
Q ss_pred ---ChHH-HHHHHHhcccC---CCCCCCcEEEEcccCCCCCC---------------CCCC------------------C
Q 042800 193 ---PFEE-RVDTVLSYFDL---PSDEIPAFTALYFEDPDSHG---------------HVVG------------------P 232 (450)
Q Consensus 193 ---~~~~-~~~~~~~~l~~---~~~~~P~fl~~~~~~~d~~~---------------h~~g------------------~ 232 (450)
.+.+ .....+.+++. ....+|||+++.|++||.+. |.+. +
T Consensus 180 ~kdyltDlitn~s~~ff~~s~~~~~~~Pf~l~is~~aPHgped~apQf~~~F~n~~~h~t~s~n~aPnpdk~W~~~~t~p 259 (541)
T KOG3731|consen 180 SKDYLTDLITNDSLLFFDGSKKRHSQEPFFLAISFPAPHGPEDSAPQFSHLFNNVQFHRTPSYNLAPNPDKHWILRTTGP 259 (541)
T ss_pred chhhhchhhhhhhHHHHhhccccccCCCeEEEeccCCCCCCCCccHHHHHhccccccccCcccccCCCCccceeeeeccC
Confidence 1111 12344455543 23478999999999999832 2211 1
Q ss_pred Cc-----------HHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCCCCCCcEEEccccCCcCCCCCCeEee
Q 042800 233 DD-----------VAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVGTCEDKVIFLDDLAPWVKIPADWVHS 301 (450)
Q Consensus 233 ~~-----------~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 301 (450)
.+ .+..+.+..+|+.|.+|.+.|.+.|.++||+||.|||||. +++++.-|.
T Consensus 260 m~~ih~~ft~~l~rkrlQtlqSvd~sve~l~n~l~elgeLdnTyivytsDhGy---------hlGqfgl~k--------- 321 (541)
T KOG3731|consen 260 MSNIHIPFTNILPRKRLQTLQSVDDSVERLYNLLGELGELDNTYIVYTSDHGY---------HLGQFGLWK--------- 321 (541)
T ss_pred CCccccccccchHHHHHHHHHhHHHHHHHHHHHHHHhhcccceEEEEEcCCcc---------ccccccccc---------
Confidence 11 3457889999999999999999999999999999999999 344441110
Q ss_pred ccceEEEeCCCCCCHHHHHHHHHhhhccCcccCCcceEEEecCCCcccccCCCCCCCCCeEEEecCCeEEEeeccCCCcc
Q 042800 302 YFPLLAIWPPAGHNLTEIVQQMNQGLDSGKVEKGKSLRVYLKEELPARLHYAASDRIPPIIGMVDEGFTVAQRRTEGARY 381 (450)
Q Consensus 302 ~~~~~~~~p~~~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~~~~~~g~~~~~~~~~~~~~ 381 (450)
|.+ +| |.
T Consensus 322 ---------------------------------gks--------~p---------------------yE----------- 328 (541)
T KOG3731|consen 322 ---------------------------------GKS--------MP---------------------YE----------- 328 (541)
T ss_pred ---------------------------------CCC--------Cc---------------------ee-----------
Confidence 000 00 00
Q ss_pred CCCcCCCCCCCCcccceeeccCCCCCCCcccCCc-cchhHHHHHHHhcCCCCC-CCCCCCccccccCC
Q 042800 382 CGGAHGYDNEYFSMRSIFIGHGPRFARGRKVPSF-ENVQIYNVITSLLNIKGA-PNNGSKSFPQSILL 447 (450)
Q Consensus 382 ~~g~HG~~~~~~~~~~~f~~~Gp~~~~~~~~~~~-~~~Diapti~~llgi~~~-~~~G~~~~~~~~~~ 447 (450)
-+.+++|+..||+|+++.....+ .+|||||||+.+.|++.| ..||+. ++.+|.
T Consensus 329 -----------fdiRVPf~iRgP~v~~~~~~~~Iv~niDlaPTilDiAGlp~p~~mdg~s--ll~ll~ 383 (541)
T KOG3731|consen 329 -----------FDIRVPFLIRGPGVAPNKTVNEIVLNIDLAPTILDIAGLPKPACMDGRS--LLPLLG 383 (541)
T ss_pred -----------EeeeeeEEeeCCCCCccccchhhheeccccchhhhhcCCCCcccccccc--hhhhhc
Confidence 14689999999999999987654 899999999999999976 367764 555443
No 8
>COG3119 AslA Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]
Probab=99.96 E-value=9.6e-28 Score=240.66 Aligned_cols=69 Identities=28% Similarity=0.495 Sum_probs=61.7
Q ss_pred CCCcEEEEEeCCCCCCC----CCCC--CCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCcc
Q 042800 58 ERPVVILVSSDGFRFGY----QFKT--PTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRF 128 (450)
Q Consensus 58 ~~pnvvlI~iD~l~~~~----~~~~--~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~ 128 (450)
+|||||+|++|++++.. .... .|||+++|+++|++|+|+|++ ++.|.|+|++|+||+||.+||+.+|..
T Consensus 3 ~rPNil~i~~Ddlg~~~l~~~g~~~~~~tp~~d~LA~~Gv~f~n~y~~--~~~c~PsRa~l~TGr~~~~~G~~~~~~ 77 (475)
T COG3119 3 KRPNILIIMADDLGYGDLGAYGGPVVGPTPNIDRLAAEGVRFTNAYTT--SPCCGPSRAALLTGRYPFRTGVGGNAE 77 (475)
T ss_pred CCCcEEEEEeccCCCCCCCcCCCccccCCCCHHHHHhcCceeeccccC--cCCCchhhhHHhhCCCccccccccccC
Confidence 39999999999999984 3334 799999999999999999988 677779999999999999999999865
No 9
>COG1524 Uncharacterized proteins of the AP superfamily [General function prediction only]
Probab=99.96 E-value=9.8e-29 Score=247.41 Aligned_cols=376 Identities=23% Similarity=0.307 Sum_probs=228.4
Q ss_pred ccCCCCcEEEEEeCCCCCCCCCC--CCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccCCCC
Q 042800 55 KKLERPVVILVSSDGFRFGYQFK--TPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFVEPR 132 (450)
Q Consensus 55 ~~~~~pnvvlI~iD~l~~~~~~~--~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~~~~ 132 (450)
....++++|+|++||+++++..+ ..+|++.+|+++|..+. .+.+++|+.|.|+++||+||.+|..||+.+|.++++.
T Consensus 34 ~~~~~~klvli~iDgl~~d~~~~~~~~~p~l~~l~~~g~~~~-~~~s~~Pt~T~p~~~tl~TG~~P~~hgi~~N~~~~~~ 112 (450)
T COG1524 34 TPAPKKKLVLISIDGLRADVLDRKAGILPFLSSLAENGVHVA-ELISVFPTTTRPRHTTLITGSYPDEHGIVGNILYDPE 112 (450)
T ss_pred CCcchheEEEEEEeccChhhhhhhccCchhHHHHHhCCceeE-EEecCCCccccccceeeecccCcchhccccccccCCc
Confidence 34457789999999999997544 78999999999999654 5788999999999999999999999999999999988
Q ss_pred CCCcc---cCCC----C----CCCcccCCcchHhHHhcCCceEE-EeecCccccCCCccCCCcccccCCCCCChHHHHHH
Q 042800 133 TGDQF---SPAR----H----EPKWWLGEPLWETVANQGLKAAA-YFWAGSEVRKGSWDCPKGYCMKYNSSVPFEERVDT 200 (450)
Q Consensus 133 ~~~~~---~~~~----~----~~~~~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
.++.+ .... . ...|..+.++|......+.+... ..|++..........+. ..............++.
T Consensus 113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 191 (450)
T COG1524 113 TGDSVLQFLLDNPTILFPGDDEAGMDVAAPFESLTVSDKLRVAVDLVWDVPILHYLHIGGPD-HITMRRFLIDEDDNIKP 191 (450)
T ss_pred ccchHHHHHhcCCceecCcccccccccCccceeeecCCcccccccccCccccccceeecCCc-ccccChhhhhhHHHHHH
Confidence 77653 1110 0 11222223333333222222211 22332221110000000 00000000011111211
Q ss_pred HHh-----------cccC---CCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEE
Q 042800 201 VLS-----------YFDL---PSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTV 266 (450)
Q Consensus 201 ~~~-----------~l~~---~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~v 266 (450)
..+ ++.. .++.+|+++++|+...|..+|.+|+.++++..+++.+|..++++++.+++.|..+++++
T Consensus 192 ~~~~~~~~~~d~~~~~~~~~~~~~~~p~~~l~~~~~iD~~~H~~G~~s~~~~~~~~~~d~~l~~ll~~l~~~~~~~~~~~ 271 (450)
T COG1524 192 GYDYISEHFLDSLLFLDSVLLLDRADPDLLLVYLPNIDAIGHKYGPDSPEYAEAVREVDSLLGELLELLKKRGLYEEYLV 271 (450)
T ss_pred HhccccccCCcceeeeccccCccccCcchhhhhccccchhhhccCCCCHHHHhhhhhhhhhHHHHHHHHHhhccccceEE
Confidence 111 1111 12348999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCcEEEccccCCcCCCCCCeEee---ccceEEEeCCCCCCHHHHHHHHHhhhccCcccCCcceEEEec
Q 042800 267 ILLGDHGMVGTCEDKVIFLDDLAPWVKIPADWVHS---YFPLLAIWPPAGHNLTEIVQQMNQGLDSGKVEKGKSLRVYLK 343 (450)
Q Consensus 267 ivtsDHG~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~ 343 (450)
|++|||||.+...+..++++.... ...+... .+....+..+.......+...+...... ....++.+
T Consensus 272 ii~sDHG~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~ 341 (450)
T COG1524 272 IITSDHGMSPLGVHGIIYLNELLE----EKGIFTLLVLYGGPGEVDLPDPGLIRWIYSLLLDISDS------LISEILTK 341 (450)
T ss_pred EEecccccchhhhhhhhhHHHhhh----ccceEEEeeecCcceEEEecCcchhHHHHHHHhhhhhh------hHHHHhhh
Confidence 999999999654345566655521 1111111 1222222222222333444444322100 01122333
Q ss_pred CCCcccccCCCCCCCCCeEEEecCCeEE---EeeccCCCccCCCcCCCCCCCCcccceeeccCCCCCCCc-ccCCccchh
Q 042800 344 EELPARLHYAASDRIPPIIGMVDEGFTV---AQRRTEGARYCGGAHGYDNEYFSMRSIFIGHGPRFARGR-KVPSFENVQ 419 (450)
Q Consensus 344 ~~~~~~~~~~~~~~~~di~~~~~~g~~~---~~~~~~~~~~~~g~HG~~~~~~~~~~~f~~~Gp~~~~~~-~~~~~~~~D 419 (450)
..++.+.++.....+.-.......++.. ............++||+.+..+.++.+|+.+|++++.+. .+......+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (450)
T COG1524 342 LSIPKRNSFGIGELIIWAEFSVHFLFVTEAADFGFARKSLELLGTHGFSPLLPLFRVLFIISGPGFANGKTLILLAGLHD 421 (450)
T ss_pred hhhhHhhhcCCCceeecccccccccchhhhhccccccccccccceecCCccChhhhheeeeeccccccceeeeccccccc
Confidence 3344333332221111111111122210 011111123567999999999999999999999999875 456678999
Q ss_pred HHHHHHHhcCCCCCCCCCCCccc
Q 042800 420 IYNVITSLLNIKGAPNNGSKSFP 442 (450)
Q Consensus 420 iapti~~llgi~~~~~~G~~~~~ 442 (450)
++||++...|+.++...+.....
T Consensus 422 ~~p~~~~~~~~~~~~~~~~~~~~ 444 (450)
T COG1524 422 ILPTILAVSGLEPGEIWGILLAL 444 (450)
T ss_pred ccccchhhccCCcccccChhHHH
Confidence 99999999999987666655433
No 10
>COG3379 Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=9.1e-27 Score=213.62 Aligned_cols=357 Identities=19% Similarity=0.261 Sum_probs=229.3
Q ss_pred CcEEEEEeCCCCCCCCC--CCCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccCCCCCCCcc
Q 042800 60 PVVILVSSDGFRFGYQF--KTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFVEPRTGDQF 137 (450)
Q Consensus 60 pnvvlI~iD~l~~~~~~--~~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~~~~~~~~~ 137 (450)
-++++|.+||..+..++ +..+|||++|+++|+.-. +.+++||.|.|+|.||+||..|.+|||++.. .+..++.-
T Consensus 4 ~K~~liGlDgvp~sl~~~f~~~lpnl~~Lm~~~s~G~--l~S~iPpIT~~~W~sl~TG~~PGe~GiygF~--~Rkg~sy~ 79 (471)
T COG3379 4 RKTLLIGLDGVPPSLFRQFRDNLPNLNKLMKNGSFGK--LESGIPPITPAAWPSLFTGYNPGETGIYGFR--HRKGNSYS 79 (471)
T ss_pred ceEEEEEeCCCCHHHHHHHhhhhhHHHHHHHhccccc--ccccCCCcchhhHHHHhhccCCccccceeee--cccCCccC
Confidence 46899999999997432 457999999999999874 8889999999999999999999999999953 33333322
Q ss_pred cCCCCCCCcccCCcchHhHHhcCCceEEEeecCccccC-------CCc---------cCCCccc--------ccCCCC--
Q 042800 138 SPARHEPKWWLGEPLWETVANQGLKAAAYFWAGSEVRK-------GSW---------DCPKGYC--------MKYNSS-- 191 (450)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-------~~~---------~~~~~~~--------~~~~~~-- 191 (450)
......++|....++|+.+..+|+++..++.|...... +++ .+++... ..|...
T Consensus 80 ~~yva~Ss~vk~~~iWD~L~~kG~k~~V~~vP~tyPpk~i~g~lvS~f~tP~~~~~~a~P~e~~~eI~~t~~~e~vfdv~ 159 (471)
T COG3379 80 EPYVAHSSTVKEDPIWDLLGKKGKKSVVAGVPPTYPPKRIKGNLVSGFLTPDKSKAKAYPPELKDEIENTTGNEYVFDVE 159 (471)
T ss_pred ceecccccccccccHHHHHhhcCceEEEEeCCCCCCCcccccceeeeecCCCccccccCCHHHHHHHHhccccceeeecc
Confidence 33334567778899999999999999988766442111 011 1111110 001000
Q ss_pred ---CChHH-----------HHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCC----CCc-----------HHHHHHHH
Q 042800 192 ---VPFEE-----------RVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVG----PDD-----------VAITKAVA 242 (450)
Q Consensus 192 ---~~~~~-----------~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g----~~~-----------~~~~~~~~ 242 (450)
.+.+. +.+.+..++ ..+..++....+.+.|+..|.++ |.+ ....+-.+
T Consensus 160 ~~~edk~~~i~d~~~~~~~~k~~v~~~~---~~k~wD~~~~v~~gTDRv~H~~w~y~dp~H~lypg~~n~yEnvi~eyy~ 236 (471)
T COG3379 160 YHDEDKDIFIEDLWENTESRKEVVKEYL---SPKEWDCFGFVMIGTDRVHHALWKYLDPEHPLYPGEQNKYENVIPEYYS 236 (471)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhh---CcccccceeEEEEehhHHhhhhhhhcCccccCCcccCchHhHHHHHHHH
Confidence 01000 012233344 23447777777788887766542 211 22344567
Q ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCCCCCCcEEEccccC---CcCCCCC------------------CeEe-
Q 042800 243 RIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVGTCEDKVIFLDDLA---PWVKIPA------------------DWVH- 300 (450)
Q Consensus 243 ~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~~~~~~~~~l~~~~---~~~~~~~------------------~~~~- 300 (450)
-+|+.||.+++.+.- ++|.+++.||||+... ...+.+++|+ +|+++.. +|-.
T Consensus 237 LvD~~IG~~~~~i~~----~e~~l~vvSDHGf~s~--~g~f~lnrWL~~~GyL~l~~~p~~l~~Gi~~~~~~~~idw~rt 310 (471)
T COG3379 237 LVDKYIGLKLEIIGF----EETYLTVVSDHGFKSN--YGLFALNRWLAEEGYLSLKDNPKGLDHGILKDLLAKKIDWKRT 310 (471)
T ss_pred HHHHHHHHHHHhccc----cceEEEEEeccccccc--hhhHHHHHHHHhcCeeeeccCcccCCccchhhhhhhhhhhhhh
Confidence 899999999998873 6899999999999754 3556677765 3443321 1211
Q ss_pred -----e-ccceEEEeCCCC--------CCHHHHHHHHHhhhccCcccCCc--ceEEEecCCCcccccCCCCCCCCCeE-E
Q 042800 301 -----S-YFPLLAIWPPAG--------HNLTEIVQQMNQGLDSGKVEKGK--SLRVYLKEELPARLHYAASDRIPPII-G 363 (450)
Q Consensus 301 -----~-~~~~~~~~p~~~--------~~~~~~~~~l~~~l~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~di~-~ 363 (450)
+ .-.-+++..+.. .+.++++++|...|+.....++. .+.||..++++.. .....||++ .
T Consensus 311 ~a~~~Gg~~sri~iN~~gRE~~Giv~~ke~~~vi~elt~~l~ki~~Pdg~~~~~~V~~~~ely~~----dr~~~pDlmV~ 386 (471)
T COG3379 311 KAYYWGGGYSRIYINLEGREPRGIVGKKEFDKVIDELTINLEKIEGPDGEEVIFRVYYPEELYPG----DRGAGPDLMVY 386 (471)
T ss_pred heeccCCceeEEEEeccccccccccchhHHHHHHHHHHHHHHhccCCCCceeEEEEeccccCCcc----ccccCCCcEEe
Confidence 1 011333333221 13567888888777765444443 6789999998642 123357765 4
Q ss_pred EecCCeEEEeeccCCCc-cCCCcCCCCCCCCcccceeeccCCCCCCCcccCCccchhHHHHHHHhcCCCCC
Q 042800 364 MVDEGFTVAQRRTEGAR-YCGGAHGYDNEYFSMRSIFIGHGPRFARGRKVPSFENVQIYNVITSLLNIKGA 433 (450)
Q Consensus 364 ~~~~g~~~~~~~~~~~~-~~~g~HG~~~~~~~~~~~f~~~Gp~~~~~~~~~~~~~~Diapti~~llgi~~~ 433 (450)
+.+.+|.+......... ...-.||-++..+..+++|-+.||.++.+.....+.+.||||||+.|+||+.+
T Consensus 387 idn~~~~i~~~i~~Pt~~l~~~~~gp~~a~H~~~gi~~~~~~~~~~~~k~~s~~IyDvaPTIL~L~gi~~~ 457 (471)
T COG3379 387 IDNLSFSIAGTIGKPTIYLRENDYGPDTADHSYYGIFDINGPIIKDGKKQSSVSIYDVAPTILKLYGINCP 457 (471)
T ss_pred cCCCCcccccccCCCccccccCCCCCCccccCccccccccccchhccccccceeeEeechHHHHHhCCCCC
Confidence 66778877654432211 11112333333344578999999999988666678999999999999999975
No 11
>PF00884 Sulfatase: Sulfatase; InterPro: IPR000917 Sulphatases 3.1.6. from EC are enzymes that hydrolyze various sulphate esters. The sequence of different types of sulphatases are available and have shown to be structurally related [, , ]; these include: arylsulphatase A 3.1.6.8 from EC (ASA), a lysosomal enzyme which hydrolyses cerebroside sulphate; arylsulphatase B 3.1.6.12 from EC (ASB), which hydrolyses the sulphate ester group from N-acetylgalactosamine 4-sulphate residues of dermatan sulphate; arylsulphatase C (ASD) and E (ASE); steryl-sulphatase 3.1.6.2 from EC (STS), a membrane bound microsomal enzyme which hydrolyses 3-beta-hydroxy steroid sulphates; iduronate 2-sulphatase precursor 3.1.6.13 from EC (IDS), a lysosomal enzyme that hydrolyses the 2-sulphate groups from non-reducing-terminal iduronic acid residues in dermatan sulphate and heparan sulphate; N-acetylgalactosamine-6-sulphatase 3.1.6.4 from EC, which hydrolyses the 6-sulphate groups of the N-acetyl-d-galactosamine 6-sulphate units of chondroitin sulphate and the D-galactose 6-sulphate units of keratan sulphate; glucosamine-6-sulphatase 3.1.6.14 from EC (G6S), which hydrolyses the N-acetyl-D-glucosamine 6-sulphate units of heparan sulphate and keratan sulphate; N-sulphoglucosamine sulphohydrolase 3.10.1.1 from EC (sulphamidase), the lysosomal enzyme that catalyses the hydrolysis of N-sulpho-d-glucosamine into glucosamine and sulphate; sea urchin embryo arylsulphatase 3.1.6.1 from EC; green algae arylsulphatase 3.1.6.1 from EC, which plays an important role in the mineralisation of sulphates; and arylsulphatase 3.1.6.1 from EC from Escherichia coli (aslA), Klebsiella aerogenes (gene atsA) and Pseudomonas aeruginosa (gene atsA). ; GO: 0008484 sulfuric ester hydrolase activity, 0008152 metabolic process; PDB: 1P49_A 1FSU_A 2QZU_A 2W5Q_A 2W5T_A 2W5S_A 2W5R_A 3LXQ_A 1HDH_B 1E33_P ....
Probab=99.94 E-value=3.4e-26 Score=218.64 Aligned_cols=202 Identities=20% Similarity=0.291 Sum_probs=134.1
Q ss_pred CcEEEEEeCCCCCCCC----C-CCCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccCCCCCC
Q 042800 60 PVVILVSSDGFRFGYQ----F-KTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFVEPRTG 134 (450)
Q Consensus 60 pnvvlI~iD~l~~~~~----~-~~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~~~~~~ 134 (450)
||||+|++|+++.+.. . ...||+|++|+++|+.|+|++++ .+.|.|++++++||++|..+|+..+..+..
T Consensus 1 pNVv~i~~Es~~~~~~~~~~~~~~~tP~l~~l~~~g~~f~~~~s~--~~~T~~s~~~~ltG~~~~~~~~~~~~~~~~--- 75 (308)
T PF00884_consen 1 PNVVLIVLESLRADDLSCYGYPIPTTPNLDRLAENGLRFSNAYSS--GPWTSPSRFSMLTGLYPHNSGVYSNGPYQQ--- 75 (308)
T ss_dssp -EEEEEEETT--TTSSGGGTSSSSSSHHHHHHHHTSEEESSEE-S--SSSHHHHHHHHHHSS-HHHHT-SSSCSTTT---
T ss_pred CEEEEEEcccCCCCCCCCCCCCcccCHHHHHhhhccEEEEEEEec--cCccccchhhhccccccccccccccccccc---
Confidence 8999999999998732 2 23499999999999999999877 589999999999999999999876643321
Q ss_pred CcccCCCCCCCcccCCcchHhHHhcCCceEEEeecCcc-cc------CCCcc---C----CCccc-----ccC-------
Q 042800 135 DQFSPARHEPKWWLGEPLWETVANQGLKAAAYFWAGSE-VR------KGSWD---C----PKGYC-----MKY------- 188 (450)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~~------~~~~~---~----~~~~~-----~~~------- 188 (450)
...+....++.+.++++||++..+.-.... .. ..+|. . ..... ..+
T Consensus 76 --------~~~~~~~~~l~~~l~~~GY~t~~~~~~~~~~~~~~~~~~~~gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (308)
T PF00884_consen 76 --------FNLPSKFPSLPDLLKKAGYRTSFFGPWDASFYNNQAFYPSHGFDYFLGQPGLSDRIDNPRISGPFNDVNRSN 147 (308)
T ss_dssp --------CSSTTTS--HHHHHHHTT-EEEEEEES-STGGGHHCHCHHTT-SEEEEESSSGGGTTSSTTEEECTTTTEST
T ss_pred --------ccccccccccHHHHhhcccccceeeccccCccccccccccCCcceEEeeecccccccccccccccccccccc
Confidence 011112357889999999999665411100 00 00110 0 00000 000
Q ss_pred CCCCChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCC------------------CCcHHHHHHHHHHHHHHHH
Q 042800 189 NSSVPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVG------------------PDDVAITKAVARIDSMIGR 250 (450)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g------------------~~~~~~~~~~~~~D~~ig~ 250 (450)
.........++.+.+++.. ++++|+|+++++..+|.+..... .....|.+++.++|++||+
T Consensus 148 ~~~~~d~~~~~~~~~~l~~-~~~~p~f~~~~~~~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~~D~~l~~ 226 (308)
T PF00884_consen 148 EWGYSDDALFDYAIDFLLN-EDDKPFFLFIHTMGPHGPYPYPPDYAEKFPKFSPDIPDKDREMRNNYLNAIAYVDDQLGR 226 (308)
T ss_dssp TTCEHHHHHHHHHHHHHHC-TTTSSEEEEEEE-TTSSSTCTTCCHHHGGTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhh-cccccceeEEeeccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHHhhh
Confidence 0112223456777777632 34899999999999998542221 1124689999999999999
Q ss_pred HHHHHHHcCCCCCeEEEEEcCCCCC
Q 042800 251 LIDGLEKRGVFKDVTVILLGDHGMV 275 (450)
Q Consensus 251 ll~~l~~~g~~~nT~vivtsDHG~~ 275 (450)
+++.|++.|+++||+||||||||..
T Consensus 227 ~~~~l~~~~~~d~TiiiitsDHG~~ 251 (308)
T PF00884_consen 227 FIEYLKEQGLYDNTIIIITSDHGES 251 (308)
T ss_dssp HHHHHHHTTCGGGEEEEEEESSSSS
T ss_pred hhhhhhhcCCcccceeEEecCcCcc
Confidence 9999999999999999999999994
No 12
>PRK03776 phosphoglycerol transferase I; Provisional
Probab=99.89 E-value=5e-21 Score=194.31 Aligned_cols=208 Identities=15% Similarity=0.119 Sum_probs=134.0
Q ss_pred cCCCCcEEEEEeCCCCCCCC----CCCCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccCCC
Q 042800 56 KLERPVVILVSSDGFRFGYQ----FKTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFVEP 131 (450)
Q Consensus 56 ~~~~pnvvlI~iD~l~~~~~----~~~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~~~ 131 (450)
+.++||||+|.++++...|. ....||+|++|+++|+.|+|.+...-...|..+..++++|. |...-+..+...
T Consensus 158 p~kK~NVViI~LESle~ty~d~~~~~~ltP~LdkLakegl~FsN~~q~~gt~~Ti~GmfAs~cGl-Pl~~pf~~n~s~-- 234 (762)
T PRK03776 158 PNPKLNLVYIYGESLERTYFDNEAFPGLTPELGALKNEGLDFSHTQQLPGTDYTIAGMVASQCGI-PLFAPFEGNASA-- 234 (762)
T ss_pred CCCCCcEEEEEEecCChhhhccCCCCCCChhHHHHHhcCeeecCceecCCCCccHHHHHHHHcCC-CCCCCCCCcccc--
Confidence 56799999999999998754 24579999999999999998653222456899999999998 432111111100
Q ss_pred CCCCcccCCCCCCCcccCCcchHhHHhcCCceEEEeecCccc-------cCCCccC---CCcccc-----cCCCC--CCh
Q 042800 132 RTGDQFSPARHEPKWWLGEPLWETVANQGLKAAAYFWAGSEV-------RKGSWDC---PKGYCM-----KYNSS--VPF 194 (450)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~-------~~~~~~~---~~~~~~-----~~~~~--~~~ 194 (450)
....+. -....+.+.|+++||.+..+.-..... ...+|.. ...+.. .+.+. ...
T Consensus 235 -~~~~f~--------P~~~cLgdILK~~GY~T~Fi~G~d~~F~n~~~f~~~hGFD~~yg~~d~~~~~~~~~~~n~WG~~D 305 (762)
T PRK03776 235 -SVSSFF--------PQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKSHGFDHLYGSEELKSVVADPHYRNDWGFYD 305 (762)
T ss_pred -cccccC--------CccccHHHHHHhCCCceEEEeCCCcCcCchhhhHHhCCCcEEecchhcccccccccccCCcccCc
Confidence 000000 012356688999999987764111000 0011110 000000 01111 112
Q ss_pred HHHHHHHHhcccC-CCCCCCcEEEEcccCCCCCC-CC--------CC--CCcHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 042800 195 EERVDTVLSYFDL-PSDEIPAFTALYFEDPDSHG-HV--------VG--PDDVAITKAVARIDSMIGRLIDGLEKRGVFK 262 (450)
Q Consensus 195 ~~~~~~~~~~l~~-~~~~~P~fl~~~~~~~d~~~-h~--------~g--~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~ 262 (450)
+..++.+.+.++. .+.++|||+++...++|.+. +. +. ....++.++++++|.+||++++.|++.|++|
T Consensus 306 d~Lfd~A~e~l~eLsk~~kPFfl~llTlstH~P~g~~~~~c~~~~y~~~g~~~~~~~~v~~~D~~iG~fi~~Lk~~g~~d 385 (762)
T PRK03776 306 DTVLDEAWKKFEELSRSGQRFSLFTLTVDTHHPDGFISRTCNRKSYDFDGKPNQSFSAVSCSQENIAALINKIKASPWFK 385 (762)
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEEecCCCCcCCCccCchhhcccccccCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3445666655543 34678999999999999883 21 11 1235678999999999999999999999999
Q ss_pred CeEEEEEcCCCCC
Q 042800 263 DVTVILLGDHGMV 275 (450)
Q Consensus 263 nT~vivtsDHG~~ 275 (450)
||+||++||||..
T Consensus 386 NTiIV~~sDHG~m 398 (762)
T PRK03776 386 NTVIVVSSDHLAM 398 (762)
T ss_pred CeEEEEEccCCcc
Confidence 9999999999983
No 13
>PRK12363 phosphoglycerol transferase I; Provisional
Probab=99.88 E-value=3.4e-21 Score=195.50 Aligned_cols=206 Identities=18% Similarity=0.230 Sum_probs=128.3
Q ss_pred CCCCcEEEEEeCCCCCCCCC----CCCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCC-CCCccCccCCC
Q 042800 57 LERPVVILVSSDGFRFGYQF----KTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPAS-HGIINNRFVEP 131 (450)
Q Consensus 57 ~~~pnvvlI~iD~l~~~~~~----~~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~-hGi~~n~~~~~ 131 (450)
.++||||+|.+|+++..+.. ...||+|++|+++|+.|+|+++..-...|..+..+.++|..... .| ..|.+...
T Consensus 154 aKk~NVVvI~LESle~~~id~~~~~~lTPnLd~Lakegl~FtNfy~~~G~g~Ti~Gl~as~~GlPl~~~~g-~~Nt~~~~ 232 (703)
T PRK12363 154 QKRKNIVWIYGESLERTYFDEDVFPGLMPNLTRLATEAVDVRNLASTEGSGWTIAGMVASMCGVPLTTAQG-DENSMDRM 232 (703)
T ss_pred cCCCCEEEEEEccCchhhhcCCCCCCcChhHHHHHhCCeeECCeEeCCCCCcchhhHhHHHhCCCCcCCCC-cccccccc
Confidence 57899999999999976432 46799999999999999998865222345555555556643111 11 00110000
Q ss_pred CCCCcccCCCCCCCcccCCcchHhHHhcCCceEEEeecCccc-c------CCCccC--CCcccc-------cCCCC--CC
Q 042800 132 RTGDQFSPARHEPKWWLGEPLWETVANQGLKAAAYFWAGSEV-R------KGSWDC--PKGYCM-------KYNSS--VP 193 (450)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~-~------~~~~~~--~~~~~~-------~~~~~--~~ 193 (450)
. .+ .+ ...++.+.|+++||.++.+.-..... . ..+|.. ...+.. .+... ..
T Consensus 233 --~-~f-----~p---~~~~La~ILkq~GY~Taf~hG~~~sF~nrd~fyk~hGFD~f~d~~~f~~~~~~~~~~~~~WGl~ 301 (703)
T PRK12363 233 --G-HF-----LP---EARCLGDYLKDQGYTNHYVGGADASFAGKGKFLSSHGFDEVHDVNYFLHDKGVAPKHFSAWGVH 301 (703)
T ss_pred --c-cc-----Cc---ccchHHHHHHhCCCcEEEEeCCCcCcCchhhHHHhCCCCEEeechhhccccccCcccCCCCCcc
Confidence 0 00 00 12456688999999997765110000 0 001100 000000 00000 11
Q ss_pred hHHHHHHHHhcccC-CCCCCCcEEEEcccCCCCCC-CCC--------CC--CcHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 042800 194 FEERVDTVLSYFDL-PSDEIPAFTALYFEDPDSHG-HVV--------GP--DDVAITKAVARIDSMIGRLIDGLEKRGVF 261 (450)
Q Consensus 194 ~~~~~~~~~~~l~~-~~~~~P~fl~~~~~~~d~~~-h~~--------g~--~~~~~~~~~~~~D~~ig~ll~~l~~~g~~ 261 (450)
.+..++.++++++. .+.++|||+++....+|.+. +.. .. ....|.++++++|++||++++.|++.|++
T Consensus 302 Dd~lfd~A~~~Le~Ls~~~qPFfl~llTvsnH~Py~~lp~~~~~~~~~~~~gd~~Yl~tI~ysD~aIG~FId~LKksgly 381 (703)
T PRK12363 302 DDVLLDDAYDEFETLSRAGQPFMLTTLTMDTHHPAGHLPSACKGQRYDSPLGDIGMLHAIKCSDRLIGQLVDRIRNSRYG 381 (703)
T ss_pred cHHHHHHHHHHHHhhhccCCCEEEEeeCCCCCCCcccCchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 23445777777654 24579999999999999873 211 00 13578899999999999999999999999
Q ss_pred CCeEEEEEcCCCC
Q 042800 262 KDVTVILLGDHGM 274 (450)
Q Consensus 262 ~nT~vivtsDHG~ 274 (450)
|||+|||+||||.
T Consensus 382 dNTIIV~~GDH~~ 394 (703)
T PRK12363 382 KNTIIVIASDHLA 394 (703)
T ss_pred CCeEEEEEcCCCc
Confidence 9999999999986
No 14
>COG3083 Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]
Probab=99.84 E-value=7.4e-20 Score=172.97 Aligned_cols=198 Identities=19% Similarity=0.290 Sum_probs=136.8
Q ss_pred cCCCCcEEEEEeCCCCCCCCCCCCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCC-CCCccCccCCCCCC
Q 042800 56 KLERPVVILVSSDGFRFGYQFKTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPAS-HGIINNRFVEPRTG 134 (450)
Q Consensus 56 ~~~~pnvvlI~iD~l~~~~~~~~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~-hGi~~n~~~~~~~~ 134 (450)
+..+||||+|++||+|.|.+++..||+|..++++.+.|+|+|++ ...|-.+...|+-|..|.- -++..+.
T Consensus 256 ~a~~~NillI~vdglR~d~l~~~~MP~la~Fa~q~i~FtnHySs--GN~t~~GlfGLFYGL~~~Y~d~vls~~------- 326 (600)
T COG3083 256 PAHGPNILLITVDGLRYDALDEKQMPNLADFANQNIRFTNHYSS--GNSTQAGLFGLFYGLSATYWDSVLSAR------- 326 (600)
T ss_pred CCCCCCEEEEEeccccccccChhhChhHHHHHhhhcccccccCC--CCccccchheeeccCChhHHHHHHhcC-------
Confidence 45689999999999999999889999999999999999999988 5677888888888876632 1111110
Q ss_pred CcccCCCCCCCcccCCcchHhHHhcCCceEEEeecCccccCCCcc--CCCcccc-cCCCCCChHHHH-HHHHhcccCCCC
Q 042800 135 DQFSPARHEPKWWLGEPLWETVANQGLKAAAYFWAGSEVRKGSWD--CPKGYCM-KYNSSVPFEERV-DTVLSYFDLPSD 210 (450)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~-~~~~~~l~~~~~ 210 (450)
..+-+.+.+++++|.-+.+.-.+.... .|. ....... ......+.++++ +....+.+..++
T Consensus 327 -------------t~p~Lie~L~qq~YQfglfss~~F~sp--lfrqalf~~l~~~~~~t~~~~~~~~t~~~~wf~~~~~~ 391 (600)
T COG3083 327 -------------TPPALIEALRQQNYQFGLFSSDGFKSP--LFRQALFSDLSLPALVTQSSDDERATQWLLWFGRYRDE 391 (600)
T ss_pred -------------CchHHHHHHHhcCceEEeeccCCCCCc--hHHHHHhhhcCccccccCCchHHHHHHHHHHHHHhhcc
Confidence 023456889999999766642221111 000 0000000 000011123333 333334444567
Q ss_pred CCCcEEEEcccCCCCCCCCC-------CCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCCC
Q 042800 211 EIPAFTALYFEDPDSHGHVV-------GPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVGT 277 (450)
Q Consensus 211 ~~P~fl~~~~~~~d~~~h~~-------g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~~ 277 (450)
++|+|.++.+...|...... .+....|..+++++|.+||++++.|++.|++|||+||||||||....
T Consensus 392 d~PwFs~L~l~~~~~~~~~~s~q~~~~~~~~~~Y~~a~~~vD~~I~~vLe~L~~~~~L~NTvVIITs~HG~eFn 465 (600)
T COG3083 392 DNPWFSYLSLNSSHANDDPSSNQAKARPPFKNRYQNALREVDSQIGRVLEQLRNSGLLDNTVVIITADHGEEFN 465 (600)
T ss_pred CCCceEEEEccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcccccceEEEEECCCCcccC
Confidence 88999999999987654210 11336799999999999999999999999999999999999998543
No 15
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=99.82 E-value=5.3e-18 Score=170.07 Aligned_cols=190 Identities=17% Similarity=0.120 Sum_probs=128.3
Q ss_pred cCCCCcEEEEEeCCCCCCC----C-CCCCCccHHH-HHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccC
Q 042800 56 KLERPVVILVSSDGFRFGY----Q-FKTPTPNIHR-LINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFV 129 (450)
Q Consensus 56 ~~~~pnvvlI~iD~l~~~~----~-~~~~tP~l~~-L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~ 129 (450)
..++++||+|+.|++|++. . .+..||+|++ ++++|+.|.+++++ .+.|.+|..+|+||.++..+.
T Consensus 220 ~~~~~~vVlViGES~R~d~~slyGY~r~TTP~L~~~la~~~~~f~n~~S~--gt~T~~Slp~mls~~~~~~~~------- 290 (522)
T PRK09598 220 NHSKSVVVLVIGESARKHNYALYGYEKPTNPRLSKRLATHELTLFNATSC--ATYTTASLECILDSSFKNTSN------- 290 (522)
T ss_pred CCCCCEEEEEEECCccHhhcccCCCCCCCChhhhhhcccCceEEcceeeC--CCCHHHHHHHHccCCCccccc-------
Confidence 4468899999999999872 2 3567999977 55689999998776 689999999999998875532
Q ss_pred CCCCCCcccCCCCCCCcccCCcchHhHHhcCCceEEEeecCccc--cCCCccCCCcccccCCC-CC-ChHHHHHHHHhcc
Q 042800 130 EPRTGDQFSPARHEPKWWLGEPLWETVANQGLKAAAYFWAGSEV--RKGSWDCPKGYCMKYNS-SV-PFEERVDTVLSYF 205 (450)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l 205 (450)
. .+++.+.++++||+|....-..... ....|.....+.....+ .. ..+..+..+.+++
T Consensus 291 -~-----------------~~nl~~ilk~aGy~T~W~snq~g~~~~~~~~~~~~~~~~~~~~~~~~~~De~LL~~l~~~l 352 (522)
T PRK09598 291 -A-----------------YENLPTYLTRAGIKVFWRSANDGEPNVKVTSYLKNYELIQKCPNCEAPYDESLLYNLPELI 352 (522)
T ss_pred -c-----------------cCCHHHHHHHCCCeEEEEECCCCCCCccceeeccchhccccCCCCCCCCHHHHHHHHHHHH
Confidence 0 1256688999999995443211000 00011000001111111 11 2233455666666
Q ss_pred cCCCCCCCcEEEEcccCCCCCC--CCC-------CCC--------------cHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 042800 206 DLPSDEIPAFTALYFEDPDSHG--HVV-------GPD--------------DVAITKAVARIDSMIGRLIDGLEKRGVFK 262 (450)
Q Consensus 206 ~~~~~~~P~fl~~~~~~~d~~~--h~~-------g~~--------------~~~~~~~~~~~D~~ig~ll~~l~~~g~~~ 262 (450)
+. .+++|+|+++|..+.|.+. .+| .|. ...|.+++.++|..||++++.|++.+.
T Consensus 353 ~~-~~~~p~fivlH~~GSH~P~Y~~RyP~~f~~F~p~~~~~~l~~~~~~~~~n~YdnsI~ytD~~l~~ii~~Lk~~~~-- 429 (522)
T PRK09598 353 KA-SSNENVLLILHLAGSHGPNYDNKYPLNFRVFKPVCSSVELSSCSKESLINAYDNTIFYNDYLLDKIISMLKNLKQ-- 429 (522)
T ss_pred Hh-cCCCCeEEEEeCcCCCCCcccccCChhhcccCCCCcchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--
Confidence 53 2347999999999999752 111 110 135899999999999999999999876
Q ss_pred CeEEEEEcCCCCC
Q 042800 263 DVTVILLGDHGMV 275 (450)
Q Consensus 263 nT~vivtsDHG~~ 275 (450)
||+||++||||..
T Consensus 430 ~t~iIy~SDHGe~ 442 (522)
T PRK09598 430 PALMIYLSDHGES 442 (522)
T ss_pred CeEEEEEccCccc
Confidence 9999999999984
No 16
>PRK10649 hypothetical protein; Provisional
Probab=99.77 E-value=7.6e-18 Score=171.58 Aligned_cols=190 Identities=13% Similarity=0.080 Sum_probs=124.1
Q ss_pred CCCcEEEEEeCCCCCCC----C-CCCCCccHHHHHh---cCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccC
Q 042800 58 ERPVVILVSSDGFRFGY----Q-FKTPTPNIHRLIN---QGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFV 129 (450)
Q Consensus 58 ~~pnvvlI~iD~l~~~~----~-~~~~tP~l~~L~~---~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~ 129 (450)
+.+|||+|+.|++|.+. . .+..||+|++|++ +++.|+|++++ .+.|.+|+.+++|..... +
T Consensus 235 ~p~niVlVIGES~r~d~~slyGY~r~TTP~Ld~l~~~~~~~~~F~n~~S~--~~~T~~Sl~~~LS~~~~~------~--- 303 (577)
T PRK10649 235 APRTLVLVIGESTQRGRMSLYGYPRETTPELDALHKTDPGLTVFNNVVTS--RPYTIEILQQALTFADEK------N--- 303 (577)
T ss_pred CCCeEEEEEEeccCHhhccccCCCCCCChhHHhhhccCCCeEEeCceecC--CcCHHHHHHHHccCCccc------c---
Confidence 44499999999999983 2 4467999999998 88999998887 689999999999842110 0
Q ss_pred CCCCCCcccCCCCCCCcccCCcchHhHHhcCCceEEEeecCcccc----CCCccC---CCcccc--cCCCCCC-hHHHHH
Q 042800 130 EPRTGDQFSPARHEPKWWLGEPLWETVANQGLKAAAYFWAGSEVR----KGSWDC---PKGYCM--KYNSSVP-FEERVD 199 (450)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~----~~~~~~---~~~~~~--~~~~~~~-~~~~~~ 199 (450)
+ ..|...+++.+.++++||+|..+.-...... ...+.. ...+.. ....... .++.+.
T Consensus 304 -~------------~~~~~~~~l~~llk~aGY~T~wisNq~~~~~~~~~~~~~~~~~d~~~f~~~~~~~~~~~~D~~LL~ 370 (577)
T PRK10649 304 -P------------DLYLTQPSLMNMMKQAGYKTFWITNQQTMTARNTMLTVFSRQTDKQYYMNQQRTQNAREYDTNVLK 370 (577)
T ss_pred -h------------hhhccCCCHHHHHHHCCCeEEEEeCCccccccchhhhHhhhhccchhhccccccCCCCCcHHHHHH
Confidence 0 0111134678999999999964421111000 000100 000000 0111111 223334
Q ss_pred HHHhcccCCCCCCCcEEEEcccCCCCCCCC--------CCCC---------------cHHHHHHHHHHHHHHHHHHHHHH
Q 042800 200 TVLSYFDLPSDEIPAFTALYFEDPDSHGHV--------VGPD---------------DVAITKAVARIDSMIGRLIDGLE 256 (450)
Q Consensus 200 ~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~--------~g~~---------------~~~~~~~~~~~D~~ig~ll~~l~ 256 (450)
...++++ +..+|.|+++|+.++|..... +.+. -..|.+++.++|..||++++.|+
T Consensus 371 ~l~~~L~--~~~~~~fivlHl~GsH~~Y~~RyP~~~~~F~~~~~~~~~~~~~~~~~~~~~Y~nsI~y~D~~l~~ii~~Lk 448 (577)
T PRK10649 371 PFSEVLA--DPAPKKFIIVHLLGTHIKYKYRYPENQGKFDDRTGHVPPGLNADELESYNDYDNANLYNDHVVASLIKDFK 448 (577)
T ss_pred HHHHHHh--ccCCCcEEEEEecCCCcchhhhCCHHHhcCCCCCCcccccccchHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 4445554 335688999999999985321 2111 13599999999999999999999
Q ss_pred HcCCCCCeEEEEEcCCCCC
Q 042800 257 KRGVFKDVTVILLGDHGMV 275 (450)
Q Consensus 257 ~~g~~~nT~vivtsDHG~~ 275 (450)
+.+ +||+||++||||..
T Consensus 449 ~~~--~nt~iiy~SDHGe~ 465 (577)
T PRK10649 449 ATD--PNGFLVYFSDHGEE 465 (577)
T ss_pred cCC--CCeEEEEECCCCcc
Confidence 874 89999999999995
No 17
>KOG2125 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=99.74 E-value=2e-17 Score=162.17 Aligned_cols=199 Identities=20% Similarity=0.278 Sum_probs=129.5
Q ss_pred cCCCCcEEEEEeCCCCCCCC--CCCCCccHHHHHhcC--ceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccCCC
Q 042800 56 KLERPVVILVSSDGFRFGYQ--FKTPTPNIHRLINQG--TEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFVEP 131 (450)
Q Consensus 56 ~~~~pnvvlI~iD~l~~~~~--~~~~tP~l~~L~~~G--~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~~~ 131 (450)
+...+++|++++|++|.|+. .+..+|+-..++.+| .-+. ++... |++|.|-..++.||..|..--+.-|.....
T Consensus 47 ~~~~~~lvf~viDalr~dF~~~s~~smp~t~s~~~~~~a~g~~-a~A~~-PTVTmPRLka~tTGtlp~FidvllNva~~~ 124 (760)
T KOG2125|consen 47 PPEKDRLVFVVIDALRADFLFSSKESMPFTQSLLANGDAKGYH-AFARP-PTVTMPRLKAITTGTLPSFIDVLLNVATQE 124 (760)
T ss_pred CcccceEEEEEhhhhhhhccccCCCCCccHHHHHhcCCceeee-cccCC-CcccchhhhhhhcCCCccHHHHHHhhhhHh
Confidence 34577899999999999964 456899988877643 4443 44433 899999999999999997766655532222
Q ss_pred CCCCcccCCCCCCCcccCCcch-HhHHhcCCceEEEeecCcccc--CCCcc----CCCcccccCCCCCChHHHHHHHHhc
Q 042800 132 RTGDQFSPARHEPKWWLGEPLW-ETVANQGLKAAAYFWAGSEVR--KGSWD----CPKGYCMKYNSSVPFEERVDTVLSY 204 (450)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (450)
... ..| ..+.+.|.+...+ |...-.. .+.|. ....+..+|. .-++.+.+-+.-
T Consensus 125 ~~~----------------d~wl~q~~~~n~kv~f~-GDdTWLkLfPs~f~~f~g~~SFfVsDyt---~vDnNVTr~L~~ 184 (760)
T KOG2125|consen 125 LLD----------------DNWLGQFFQINKKVHFN-GDDTWLKLFPSEFLRFEGVTSFFVSDYT---DVDNNVTRHLPT 184 (760)
T ss_pred hcc----------------cHHHHHHHHhCcEEEEc-cchHHHHHhhHHHHhccCcceEEehhhh---hhhhhhhhcCCc
Confidence 111 112 3445555443221 1100000 00000 0000111110 011111122221
Q ss_pred ccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCCC
Q 042800 205 FDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVGT 277 (450)
Q Consensus 205 l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~~ 277 (450)
+ +.+..+++.+.+|+.+.|+.||..|+.++..-+.++++|+-+++|.+++.+..-.++|++|+++||||+..
T Consensus 185 l-~~~~~~Wd~lILHYLGlDHIGH~~G~~Sp~vp~KLkEmDeiv~~I~~~~~~~~s~d~tllil~gDHGM~e~ 256 (760)
T KOG2125|consen 185 L-ELNSSDWDLLILHYLGLDHIGHVLGPSSPLVPAKLKEMDEIVKRIHDYLMEHRSGDQTLLILCGDHGMTES 256 (760)
T ss_pred h-hhhhcchhHHHHHHhccceeccccCCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEcccccccc
Confidence 1 22456799999999999999999999999999999999999999999999977778999999999999754
No 18
>KOG2126 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=99.72 E-value=1.1e-16 Score=161.06 Aligned_cols=186 Identities=19% Similarity=0.365 Sum_probs=120.7
Q ss_pred cEEEEEeCCCCCCCCC--CCCCcc---------HHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccC
Q 042800 61 VVILVSSDGFRFGYQF--KTPTPN---------IHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFV 129 (450)
Q Consensus 61 nvvlI~iD~l~~~~~~--~~~tP~---------l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~ 129 (450)
.||++++|++|+|+.- ....|. +..+-+++.....+.+ .-|+.|.--.-.+-||..|..--+..|..
T Consensus 60 svvilliDaLrydf~ip~~~~~~y~n~~~~l~~~~~l~~~~~~l~~f~A-DpPTTTlQRLKGLTTGsLPTFID~GsNF~- 137 (895)
T KOG2126|consen 60 SVVILLIDALRYDFLIPINSPLPYHNRGTILQELKHLNKSKAFLAKFIA-DPPTTTLQRLKGLTTGSLPTFIDIGSNFA- 137 (895)
T ss_pred ceEEEEeehhhhccccccCCCchhhhcchhHHHHHhhCcchhHHHHHhc-CCCccHHHHhhccccCCCccceeccccCC-
Confidence 4999999999999421 122333 3333445554443333 33566666677899999998766655532
Q ss_pred CCCCCCcccCCCCCCCcccCCcchHhHHhcCCceEEEeecCccccCCCcc--CCCcccccCC----CCCC----hHHHHH
Q 042800 130 EPRTGDQFSPARHEPKWWLGEPLWETVANQGLKAAAYFWAGSEVRKGSWD--CPKGYCMKYN----SSVP----FEERVD 199 (450)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~----~~~~~~ 199 (450)
.+... ...+...+...|.....+ |.+ .|. .++.+...|. +..+ ..+..+
T Consensus 138 g~~I~--------------EDNfv~Ql~~~gk~vvfl---GDd----TW~~LFp~~f~~s~s~pSfnv~DLdtVDn~v~~ 196 (895)
T KOG2126|consen 138 GPAIA--------------EDNFVRQLVLNGKSVVFL---GDD----TWTSLFPNQFNKSYSFPSFNVHDLDTVDNGVIE 196 (895)
T ss_pred Ccccc--------------hhHHHHHHHHCCCeEEEe---cCc----cHHHhChHhhcCCCCCCCCCCccccccchHHHH
Confidence 22211 123445666777666443 211 121 1111111110 0011 122334
Q ss_pred HHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCCC
Q 042800 200 TVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVGT 277 (450)
Q Consensus 200 ~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~~ 277 (450)
...+.+ +++.++++..||.+.|+.||.+||+++++.+.+.++|+.|+++++.++ |||++||+|||||+..
T Consensus 197 ~if~~l---~s~dwdVlIAHfLGVDH~GHk~GPdH~~M~~KL~qmD~vI~~ii~~md-----edTlLvVmGDHGMt~n 266 (895)
T KOG2126|consen 197 KIFKSL---NSKDWDVLIAHFLGVDHCGHKHGPDHPEMADKLVQMDRVINEIIKKMD-----EDTLLVVMGDHGMTDN 266 (895)
T ss_pred Hhhhhh---ccCchHHHHHHHhCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHhc-----cCeeEEEecCCCCCCC
Confidence 444444 467899999999999999999999999999999999999999999999 7999999999999765
No 19
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=99.71 E-value=2.1e-15 Score=151.72 Aligned_cols=189 Identities=14% Similarity=0.119 Sum_probs=121.9
Q ss_pred CCCCc-EEEEEeCCCCCCC----C-CCCCCccHHHHHhcCc-eeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccC
Q 042800 57 LERPV-VILVSSDGFRFGY----Q-FKTPTPNIHRLINQGT-EAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFV 129 (450)
Q Consensus 57 ~~~pn-vvlI~iD~l~~~~----~-~~~~tP~l~~L~~~G~-~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~ 129 (450)
..+|+ ||+|+-|..|.+. . .+..||.|.+ +++ .|++++++ .+.|.+|..+|+|+..+..+...
T Consensus 231 ~~~~~~vVlViGESaR~~~~slyGY~r~TtP~L~~---~~~~~F~~~~S~--gt~T~~Svp~mfS~~~~~~y~~~----- 300 (545)
T PRK11598 231 QKRKNLTILVVGETSRAENFSLGGYPRETNPRLAK---DNVIYFPHTTSC--GTATAVSVPCMFSNMPRKHYDEE----- 300 (545)
T ss_pred CCCCcEEEEEehhhHHHhhcCCCCCCCCCCccccc---cCceeecccccC--ccchHHHHHHHhcccccccccch-----
Confidence 34666 7788999999872 2 3456898764 555 68887776 68999999999999866432210
Q ss_pred CCCCCCcccCCCCCCCcccCCcchHhHHhcCCceEEEeecCccc-cCCCccC-C-Cccc-----ccCCCCC-ChHHHHHH
Q 042800 130 EPRTGDQFSPARHEPKWWLGEPLWETVANQGLKAAAYFWAGSEV-RKGSWDC-P-KGYC-----MKYNSSV-PFEERVDT 200 (450)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~~~~~-~-~~~~-----~~~~~~~-~~~~~~~~ 200 (450)
. +...+++.+.++++||++ .|..... ..+.+.. + .... ....... ..+..++.
T Consensus 301 ---~------------~~~~~~l~d~l~~aG~~t---~W~~Nq~g~~g~~~r~~~~~~~~~~~~~~~~~~~~~De~LL~~ 362 (545)
T PRK11598 301 ---L------------AHHQEGLLDIIQRAGINV---LWNDNDGGCKGACDRVPHQDVTALNLPGQCIDGECYDEVLFHG 362 (545)
T ss_pred ---h------------hhhcccHHHHHHHcCCeE---EeecCCCCCcchhcccchhhhhhhccccccCCCCccHHHHHHH
Confidence 0 001246789999999999 3432211 0111100 0 0000 0011111 22334455
Q ss_pred HHhcccCCCCCCCcEEEEcccCCCCCC--CCC-------CCC--------------cHHHHHHHHHHHHHHHHHHHHHHH
Q 042800 201 VLSYFDLPSDEIPAFTALYFEDPDSHG--HVV-------GPD--------------DVAITKAVARIDSMIGRLIDGLEK 257 (450)
Q Consensus 201 ~~~~l~~~~~~~P~fl~~~~~~~d~~~--h~~-------g~~--------------~~~~~~~~~~~D~~ig~ll~~l~~ 257 (450)
+.++++. .+++.|+++|+.++|.+. .+| .|. ...|.+++.++|..||++++.|++
T Consensus 363 l~~~L~~--~~~~~fivLH~~GSH~P~Y~~RyP~~~~~F~p~~~~~~~~~~~~~~~~n~YdnsI~ytD~~lg~ii~~Lk~ 440 (545)
T PRK11598 363 LENYINN--LQGDGVIVLHTIGSHGPTYYNRYPPQFRKFTPTCDTNEIQTCTQQQLVNTYDNTILYVDYIVDKAINLLKQ 440 (545)
T ss_pred HHHHHHh--cCCCeEEEEeCCCCCCcchhhcCChhhccCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555642 234579999999999752 122 110 134899999999999999999999
Q ss_pred cCCCCCeEEEEEcCCCCC
Q 042800 258 RGVFKDVTVILLGDHGMV 275 (450)
Q Consensus 258 ~g~~~nT~vivtsDHG~~ 275 (450)
.+..+||+||++||||..
T Consensus 441 ~~~~~nT~iIy~SDHGe~ 458 (545)
T PRK11598 441 HQDKFNTSLVYLSDHGES 458 (545)
T ss_pred cCCcCCeEEEEECcCCCc
Confidence 999999999999999985
No 20
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=99.64 E-value=3.5e-14 Score=137.40 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=67.7
Q ss_pred CChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcC
Q 042800 192 VPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGD 271 (450)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsD 271 (450)
..+.+.++.+++.|+ ++.++||+++....+|+.+|.. +...+.+.+.++|+.|+.+++.+++ .+||+||+|||
T Consensus 231 psL~emt~~al~~L~--~~~~gFfl~ve~~~iD~~gH~~--d~~~~~~~l~~~D~av~~~l~~l~~---~~dTLiIvTAD 303 (384)
T cd00016 231 PSLAEMTEKAIDVLS--KNPNGFFLMVEGGRIDHAHHAN--DAAGALSETLAFDDAVEAALDFAKK---DGDTLVVVTAD 303 (384)
T ss_pred CCHHHHHHHHHHHHH--hcCCcEEEEEeCCCCCcccCCC--cHHHHHHHHHHHHHHHHHHHHHhhC---CCCeEEEEECC
Confidence 456778899999996 3458999999999999999987 4567999999999999999999983 36999999999
Q ss_pred CCCCCC
Q 042800 272 HGMVGT 277 (450)
Q Consensus 272 HG~~~~ 277 (450)
||....
T Consensus 304 Hg~~~~ 309 (384)
T cd00016 304 HSHGGT 309 (384)
T ss_pred CCCCcc
Confidence 999643
No 21
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=99.61 E-value=8.5e-14 Score=140.23 Aligned_cols=189 Identities=14% Similarity=0.155 Sum_probs=116.4
Q ss_pred CCCcEEEEEeCCCCCCCC-----CCCCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccCCCC
Q 042800 58 ERPVVILVSSDGFRFGYQ-----FKTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFVEPR 132 (450)
Q Consensus 58 ~~pnvvlI~iD~l~~~~~-----~~~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~~~~ 132 (450)
++++||+|+.|.+|.+.. .+..||+|++ ++++.+-+.+++ .+.|..|..+|+++..... ++.
T Consensus 246 ~~~~vVlViGESaRad~~slyGY~r~TtP~L~~--~~~~~~f~~~S~--gt~T~~Slp~mfs~~~~~~--------~~~- 312 (558)
T PRK11560 246 DDTYVVFIIGETTRWDHMGILGYERNTTPKLAQ--EKNLAAFRGYSC--DTATKLSLRCMFVREGGAE--------DNP- 312 (558)
T ss_pred CCCEEEEEEEcccCHhhcccCCCCCCCCcchHh--cCCEEEecCccC--CccchhhhHHHhcCCCccc--------cch-
Confidence 456888999999999732 4667899987 346554345655 6889999999998854321 000
Q ss_pred CCCcccCCCCCCCcccCCcchHhHHhcCCceEEEe-----ecCccccCCCccCCCccc-cc-CCCCCChH-HHHHHHHhc
Q 042800 133 TGDQFSPARHEPKWWLGEPLWETVANQGLKAAAYF-----WAGSEVRKGSWDCPKGYC-MK-YNSSVPFE-ERVDTVLSY 204 (450)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~~~~~ 204 (450)
.++...+.+.+.++++||++..+. |-................ .. ..+...++ ..++.+.++
T Consensus 313 -----------~~~~~~~nlld~l~~aGy~t~w~SnQ~~~w~~n~~~~~~~~~~~~~~~~~~~~g~~~~D~~LL~~l~~~ 381 (558)
T PRK11560 313 -----------QRTLKEQNVFAVLKQLGFSSELFAMQSEMWFYNNTMADNYAYREQIGAEPRNRGKPVDDMLLVDEMKQS 381 (558)
T ss_pred -----------hhhcccCCHHHHHHHCCCcEEEeecccceeeecCcccccchhhhhcccccCCCCCCcChHHHHHHHHHH
Confidence 011123568899999999985543 211100000000000000 00 01111122 234555566
Q ss_pred ccCCCCCCCcEEEEcccCCCCCCCC--------CCCC-------------cHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 042800 205 FDLPSDEIPAFTALYFEDPDSHGHV--------VGPD-------------DVAITKAVARIDSMIGRLIDGLEKRGVFKD 263 (450)
Q Consensus 205 l~~~~~~~P~fl~~~~~~~d~~~h~--------~g~~-------------~~~~~~~~~~~D~~ig~ll~~l~~~g~~~n 263 (450)
++... +++.|+++|+.++|..... +.|. ...|.+++.++|..||++++.|++ +|
T Consensus 382 L~~~~-~~~~~ivLH~~GSH~~Y~~RyP~~f~~F~p~~~~~~~~c~~~~~~n~YdnsI~ytD~~lg~ii~~Lk~----~n 456 (558)
T PRK11560 382 LGRNP-DGKHLIILHTKGSHYNYTQRYPRSFARYQPECIGVDSGCSKAQLINSYDNSVLYVDHFISSVIDQLRD----KK 456 (558)
T ss_pred HHhcC-CCCeEEEEeccCCCcChhhcCCHhhhccCCcCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC
Confidence 65322 2346789999999974321 1111 034899999999999999999998 69
Q ss_pred eEEEEEcCCCCC
Q 042800 264 VTVILLGDHGMV 275 (450)
Q Consensus 264 T~vivtsDHG~~ 275 (450)
|+||++||||..
T Consensus 457 TivIy~SDHGe~ 468 (558)
T PRK11560 457 AIVFYAADHGES 468 (558)
T ss_pred eEEEEEcCCCCc
Confidence 999999999995
No 22
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=99.57 E-value=8e-14 Score=132.29 Aligned_cols=108 Identities=16% Similarity=0.191 Sum_probs=82.4
Q ss_pred CcchHhHHhcCCceEEEeecCccccCCCccCCCcccccCCCCCChHHHHHHHHhcccCCCCCCCcEEEEcccCCCC-CCC
Q 042800 150 EPLWETVANQGLKAAAYFWAGSEVRKGSWDCPKGYCMKYNSSVPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDS-HGH 228 (450)
Q Consensus 150 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~-~~h 228 (450)
+++++.+.++|+.+..+.-....+...+. ..........+.++.+++.++ ++.+.|+++++.++|. .||
T Consensus 217 pTvld~l~~aG~~V~~VGki~DiF~g~Gl-------t~a~~~~~~~~~~~~~l~aL~---~~~~~lif~nl~d~D~~~GH 286 (381)
T TIGR01696 217 PTVLQKLKDEGHDVISIGKIADIYDGEGI-------TKKVRTTSNMDGMDATIKEMK---EDFTGISFTNLVDFDALWGH 286 (381)
T ss_pred CCHHHHHHHCCCeEEEEccHHhEecCCCc-------ccccCCCCHHHHHHHHHHHHh---cCCCCEEEEEeCCCccccCC
Confidence 57889999999998776322111111111 111134566788888888885 4457899999999996 799
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCC
Q 042800 229 VVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGM 274 (450)
Q Consensus 229 ~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~ 274 (450)
.. ++..|.++++.+|++|++|++.|+ +||+||||||||+
T Consensus 287 ~~--d~~~y~~ale~vD~~Lg~ll~~L~-----~~tllIITADHG~ 325 (381)
T TIGR01696 287 RR--DVAGYAAALELFDRRLPELFSLLR-----EDDLLIITADHGN 325 (381)
T ss_pred CC--CHHHHHHHHHHHHHHHHHHHHHhc-----cCCEEEEECCCCC
Confidence 86 788999999999999999999997 4899999999999
No 23
>PRK05362 phosphopentomutase; Provisional
Probab=99.57 E-value=8.1e-14 Score=133.70 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=82.4
Q ss_pred CcchHhHHhcCCceEEEeecCccccCCCccCCCcccccCCCCCChHHHHHHHHhcccCCCCCCCcEEEEcccCCCC-CCC
Q 042800 150 EPLWETVANQGLKAAAYFWAGSEVRKGSWDCPKGYCMKYNSSVPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDS-HGH 228 (450)
Q Consensus 150 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~-~~h 228 (450)
+++++.++++|+.+..+.-...-+...++ ..........+.++.+++.++. +++++|+++++.++|. .||
T Consensus 224 ~Tl~d~L~~aG~~v~~VGki~DiFa~~G~-------t~~~~~~~~~~~~~~ale~L~~--~~~~~fvfvn~~~~D~~~GH 294 (394)
T PRK05362 224 PTVLDKLKEAGGEVIAVGKIADIFAGQGI-------TEKVKTKSNMDGMDATIEEMKE--AGDNGLVFTNLVDFDSLYGH 294 (394)
T ss_pred CCHHHHHHHCCCeEEEEEehhhcccCCCc-------ccccCCCCHHHHHHHHHHHHHh--CCCCcEEEEecccCccccCC
Confidence 57889999999999776432211111111 1111334566778888888852 4679999999999998 499
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCC
Q 042800 229 VVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGM 274 (450)
Q Consensus 229 ~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~ 274 (450)
..+. ..|.++++.+|++|++|++.|+ +||+||||||||+
T Consensus 295 ~~~~--~~y~~ale~~D~~lg~ll~~L~-----~~tlliiTaDHG~ 333 (394)
T PRK05362 295 RRDV--AGYAAALEEFDARLPELLAALK-----EDDLLIITADHGN 333 (394)
T ss_pred cCCH--HHHHHHHHHHHHHHHHHHHHhc-----cCCEEEEeCCCCC
Confidence 7754 7899999999999999999997 3899999999998
No 24
>KOG2124 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=99.57 E-value=3e-14 Score=143.64 Aligned_cols=207 Identities=21% Similarity=0.196 Sum_probs=122.4
Q ss_pred CcEEEEEeCCCCCCCC---CC-CCCccHHHHH-hcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccCCCCCC
Q 042800 60 PVVILVSSDGFRFGYQ---FK-TPTPNIHRLI-NQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFVEPRTG 134 (450)
Q Consensus 60 pnvvlI~iD~l~~~~~---~~-~~tP~l~~L~-~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~~~~~~ 134 (450)
.+.++++.||+|+|.. .. ...|+|+.+. ++|..-.. .+.+ |+.|.|+|.++.-|-|++..-+......+|..-
T Consensus 44 ~RLvl~v~DGLRAd~~~~~~~~s~ap~LR~ii~~qg~~GiS-~tr~-PTeSRpghvAliaGfyedpSAvtkgwk~NPv~F 121 (883)
T KOG2124|consen 44 KRLVLFVGDGLRADTLFEPNCESRAPFLRSIILNQGTVGIS-HTRV-PTESRPGHVALIAGFYEDPSAVTKGWKSNPVNF 121 (883)
T ss_pred HhEEEEcccccchhhhcCccccccCCcHHHHHHhcCccccc-ccCC-CCCCCCCcEEEEeccccChHHhhhhhhcCCchh
Confidence 4699999999999932 12 3789999976 55666553 3333 999999999999999999877665333333322
Q ss_pred C-cccCCCCCCCcccCCcchHhHHhcCCceEEEeecCccccCCCccCCCcccccCCCCCChHHHHHHHHhcccC------
Q 042800 135 D-QFSPARHEPKWWLGEPLWETVANQGLKAAAYFWAGSEVRKGSWDCPKGYCMKYNSSVPFEERVDTVLSYFDL------ 207 (450)
Q Consensus 135 ~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------ 207 (450)
+ .++.......|-.+ .+-....+.+-+. .+++-+.....+.. +...-+.-..++++..+++...
T Consensus 122 DsvFN~S~~t~~~gs~-dil~~fs~~~~~v---~~~~y~~~~~~~~~-----d~~~lD~WvFd~~~~l~~~~~~~~~L~~ 192 (883)
T KOG2124|consen 122 DSVFNRSRHTYSFGSP-DILPMFSEDLSHV---DTPMYDHELEDFDS-----DAIELDEWVFDRVDDLLHNSTNDQELRD 192 (883)
T ss_pred hhhhhhhhhhhcccCc-ccchhhhcCCCcc---CccccchhHhhccc-----cccccchhhhhhHHHHHhhhhcchhHHH
Confidence 2 22221111111111 0101111111111 11110000000000 0000000001222333333211
Q ss_pred CCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCCC
Q 042800 208 PSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVGT 277 (450)
Q Consensus 208 ~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~~ 277 (450)
......-..++|+.+.|..+|.+.|++.+|.+.++++|+.|.++.+..++-=-.+.|..++|+||||++.
T Consensus 193 ~~~~~kvVfflhLlg~dt~gH~~~P~s~~y~~nl~~~d~~i~~~y~l~e~~fnD~kTayi~TaDhgms~~ 262 (883)
T KOG2124|consen 193 LLHQDKIVFFLHLLGIDTAGHAHRPYSVEYRENLKYTDKGIRELYDLFENYFNDGKTAYIFTADHGMSDF 262 (883)
T ss_pred hhccCceEEEEeecCcCccccccCCCcHHHHHHhhcCCccHHHHHHHHHHHhcCCcceEEEehhcccccc
Confidence 0122335778899999999999999999999999999999999999999855578999999999999764
No 25
>PRK05434 phosphoglyceromutase; Provisional
Probab=99.55 E-value=1.8e-13 Score=135.58 Aligned_cols=111 Identities=24% Similarity=0.374 Sum_probs=82.6
Q ss_pred HHhcCCceEEEeecCcccc-CCC---ccCCCcccccCCC--CCChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCC
Q 042800 156 VANQGLKAAAYFWAGSEVR-KGS---WDCPKGYCMKYNS--SVPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHV 229 (450)
Q Consensus 156 ~~~~G~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~ 229 (450)
.+.+++....++|+|.... ..+ +..+......|.. ..+..+.++.++++++ +++++|++++|..||..||.
T Consensus 328 aEtek~ahvt~f~~GG~~~~~~~e~r~~~~s~~va~yd~~p~Ms~~e~~d~~i~~l~---~~~~Dfv~vnf~~~D~vGHt 404 (507)
T PRK05434 328 AETEKYAHVTFFFNGGREEPFPGEDRILIPSPKVATYDLKPEMSAYEVTDKLVEAIE---SGKYDFIILNFANPDMVGHT 404 (507)
T ss_pred hcCCCCCeEEEecCCCcCCCCCCceeeecCCceeecccCCCCCcHHHHHHHHHHHHh---ccCCCEEEEEecCcchhhcC
Confidence 3445577888999876222 111 1111111122332 3566778899999995 56899999999999999998
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCC
Q 042800 230 VGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMV 275 (450)
Q Consensus 230 ~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~ 275 (450)
.+ .+++.++++.+|++||+|++.|++.|. +||||||||..
T Consensus 405 g~--~~a~~~AIe~vD~~LGrll~aLk~~g~----ivIITADHGn~ 444 (507)
T PRK05434 405 GN--LEAAVKAVEAVDECLGRVVDAVLKVGG----TLLITADHGNA 444 (507)
T ss_pred CC--HHHHHHHHHHHHHHHHHHHHHHHhCCC----EEEEEcCCCcc
Confidence 64 578999999999999999999998764 89999999985
No 26
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=99.48 E-value=3.2e-14 Score=131.03 Aligned_cols=72 Identities=29% Similarity=0.485 Sum_probs=61.7
Q ss_pred HHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCC
Q 042800 195 EERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGM 274 (450)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~ 274 (450)
.+.++.+++.++ +.+++|+++++.++|..||.. +-++|.++++.+|+.|++|++.+++ +++++|||||||.
T Consensus 126 ~~~~~~~~~~l~---~~~~~~v~~~~~~~D~~GH~~--~~~~~~~~ie~~D~~l~~l~~~~~~----~~~~liiTaDHg~ 196 (252)
T PF01676_consen 126 KEIAEAAIEALK---KDKYDFVFVHVKGTDEAGHRG--DPEAYIEAIERIDRFLGRLLEALDK----EDDLLIITADHGN 196 (252)
T ss_dssp HHHHHHHHHHHH---HTTSSEEEEEEEHHHHHHTTT---HHHHHHHHHHHHHHHHHHHHHHHH----TTEEEEEEESSBS
T ss_pred HHHHHHHHHhhh---cccCCeEEEeecCcchhhccC--CHHHHHHHHHHHHHHHHHHHHHHhc----CCCEEEEECCCCC
Confidence 334677888873 567889999999999999986 4578999999999999999999976 5799999999999
Q ss_pred C
Q 042800 275 V 275 (450)
Q Consensus 275 ~ 275 (450)
.
T Consensus 197 ~ 197 (252)
T PF01676_consen 197 D 197 (252)
T ss_dssp T
T ss_pred c
Confidence 4
No 27
>PRK12383 putative mutase; Provisional
Probab=99.43 E-value=2.9e-12 Score=123.01 Aligned_cols=107 Identities=18% Similarity=0.315 Sum_probs=77.1
Q ss_pred cchHhHHhcCCceEEEeecCccccCCCccCCCcccccCCCCCChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCC
Q 042800 151 PLWETVANQGLKAAAYFWAGSEVRKGSWDCPKGYCMKYNSSVPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVV 230 (450)
Q Consensus 151 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~ 230 (450)
++.+.+++.|+++..+.-.... +... -...+....+..+.++.+++.++ +..+.|+|+++.++|..||..
T Consensus 235 ~v~~~l~~~G~~v~~VGKi~Di-----~s~~--G~t~~~~~~~t~~~~~~~l~aL~---~~~~dlvfvnl~~~D~~GH~~ 304 (406)
T PRK12383 235 QVPQKLYEAGVPVVLVGKVADI-----VNNP--YGVSWQNLVDTQRVMDITLDEFN---THPTAFICTNIQETDLAGHAE 304 (406)
T ss_pred hhhhHHHHcCCCEEEEEEhHHe-----eccC--CcccccccCCHHHHHHHHHHHHh---cCCCCEEEEeccCCccccccC
Confidence 4556677788887665211100 0000 01111223344577888888884 445789999999999999988
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCC
Q 042800 231 GPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGM 274 (450)
Q Consensus 231 g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~ 274 (450)
++ +.|.++++.+|++|++|++.|+ ++++||||||||.
T Consensus 305 d~--~~y~~aiE~iD~~lg~ll~~L~-----~~~lliITaDHG~ 341 (406)
T PRK12383 305 DV--ARYAERLEVVDRNLARLLEAMT-----PDDCLVVMADHGN 341 (406)
T ss_pred CH--HHHHHHHHHHHHHHHHHHHHhc-----cCCEEEEEcCCCC
Confidence 55 7899999999999999999997 4899999999998
No 28
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=99.42 E-value=4.1e-12 Score=124.96 Aligned_cols=75 Identities=29% Similarity=0.425 Sum_probs=65.3
Q ss_pred CChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcC
Q 042800 192 VPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGD 271 (450)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsD 271 (450)
....+.++.++++++ +++|+|++++|..+|..||.. ...+|.++++.+|++||+|++.|++.|. +||||||
T Consensus 364 Msa~evtd~~i~~I~---~~k~dfi~vnfan~DmvGHtg--~~~a~v~AIE~vD~~LGrIl~aLke~G~----~VIiTAD 434 (501)
T TIGR01307 364 MSAKAVTDAVLEAIA---QGKFDLIVVNFANPDMVGHTG--NFEAAIKAVEALDVCLGRIVEACKKVGG----TLFLTAD 434 (501)
T ss_pred cCHHHHHHHHHHHHh---ccCCCEEEEECCCcccccCCC--CHHHHHHHHHHHHHHHHHHHHHHHhCCC----EEEEEcC
Confidence 445667889999994 578999999999999999975 4468999999999999999999998764 6999999
Q ss_pred CCCC
Q 042800 272 HGMV 275 (450)
Q Consensus 272 HG~~ 275 (450)
||.+
T Consensus 435 HGna 438 (501)
T TIGR01307 435 HGNA 438 (501)
T ss_pred CCCh
Confidence 9984
No 29
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=99.30 E-value=6.9e-11 Score=116.65 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=64.9
Q ss_pred CChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcC
Q 042800 192 VPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGD 271 (450)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsD 271 (450)
....+.++.+++.+. .++.+|++++|..+|..||.- +.+++.++++.+|.+|++|++.+++. +.++|||||
T Consensus 403 MSA~eVtd~~i~~i~---~~~ydfi~vNfan~DmvGHtG--~~ea~ikAIE~vD~~Lg~Il~al~~~----g~~liITAD 473 (558)
T PLN02538 403 MKALEIAEKARDALL---SGKFDQVRVNLANGDMVGHTG--DLEATIVACEAVDAAVKEILDAVEQV----GGIYLVTAD 473 (558)
T ss_pred CCHHHHHHHHHHHHh---cCCCCEEEEeccCcccccCCC--CHHHHHHHHHHHHHHHHHHHHHHHhc----CCEEEEeCC
Confidence 344567788888884 567999999999999999975 66889999999999999999999875 488999999
Q ss_pred CCCC
Q 042800 272 HGMV 275 (450)
Q Consensus 272 HG~~ 275 (450)
||-.
T Consensus 474 HGNa 477 (558)
T PLN02538 474 HGNA 477 (558)
T ss_pred CCCc
Confidence 9975
No 30
>COG1368 MdoB Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]
Probab=99.30 E-value=7.2e-11 Score=123.24 Aligned_cols=202 Identities=20% Similarity=0.251 Sum_probs=123.1
Q ss_pred cCCCCcEEEEEeCCCCCCC-----CCCCCCccHHHHHhcC--ceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCcc
Q 042800 56 KLERPVVILVSSDGFRFGY-----QFKTPTPNIHRLINQG--TEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRF 128 (450)
Q Consensus 56 ~~~~pnvvlI~iD~l~~~~-----~~~~~tP~l~~L~~~G--~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~ 128 (450)
..+.||||+|.++.+.--. .....||++++|.+++ ..|.+.+..+....+.-+.+.+.+-.+|...|+.-...
T Consensus 258 ~~~~~nvIvi~lES~~~~~~~~~~~g~~vtP~ln~l~~~~~s~~f~~ff~~~~~~~~~~ae~~~~~s~~~~~~~~~~~~~ 337 (650)
T COG1368 258 EAKGPNVIVIQLESFQGFLINPKVNGIEVTPNLNKLQKGGVSLLFSNFFGGVTAGSTFDAETGVLSSLFPAARGSVFQTY 337 (650)
T ss_pred ccCCCcEEEEEeccccchheeccccCCCCCCcHHHHhccCchhHHHHHHhhcCCCCcccchhhhccCCCCCccCceeeec
Confidence 4578999999999997431 2346899999999997 67666665542223444444444455554444432211
Q ss_pred CCCCCCCcccCCCCCCCcccCCcchHhHHhcCCceEEEeecCccc-------cCCCcc---CCCcccc----cCCCCCCh
Q 042800 129 VEPRTGDQFSPARHEPKWWLGEPLWETVANQGLKAAAYFWAGSEV-------RKGSWD---CPKGYCM----KYNSSVPF 194 (450)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~-------~~~~~~---~~~~~~~----~~~~~~~~ 194 (450)
.... -..+...++++||.+..++--.... ...++. ....+.. ...-....
T Consensus 338 ~~~~----------------~~slp~iLk~~GY~t~a~hg~~~~fwNr~~~yk~~Gfd~f~~~~~~~~~~~~~~~~G~sD 401 (650)
T COG1368 338 GDNK----------------YSSLPAILKQQGYKTAALHGGDGSFWNRKSFYKIFGFDDFFDLESFDGNADSEIGWGLSD 401 (650)
T ss_pred CCCC----------------cccHHHHHhcCCceEEEEeCCCcceecHHHHHHhcChhhccchhhcCCCcccccCCCCch
Confidence 1111 1356678899999997764111100 000110 0111110 00111233
Q ss_pred HHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCC--------CCCC------CcHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 042800 195 EERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGH--------VVGP------DDVAITKAVARIDSMIGRLIDGLEKRGV 260 (450)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h--------~~g~------~~~~~~~~~~~~D~~ig~ll~~l~~~g~ 260 (450)
....++++..++. -++|+|.++....-|.+-. .... .-..|.+++++.|++++++++.++++|+
T Consensus 402 ~~l~~~~~~~l~~--~~~Pfy~~~iTlsnH~Pf~~~~~~~~~~~~~~~~~~~~l~~y~~~~~y~D~al~~F~~~lkk~~~ 479 (650)
T COG1368 402 KDLFKESLPLLKK--LKKPFFSFVITLSNHGPFELPEGKRNELLEEPLSASTALANYLQAVHYADEALGQFIDKLKKSGL 479 (650)
T ss_pred HHHHHHHHHHHHh--cCCChHheEEeccCCCCCCCChhhhcccccccCcCcccccchhhhhhhHHHHHHHHHHHHHhcCC
Confidence 4456777777763 4568888777655554321 1211 2356889999999999999999999999
Q ss_pred CCCeEEEEEcCCCCC
Q 042800 261 FKDVTVILLGDHGMV 275 (450)
Q Consensus 261 ~~nT~vivtsDHG~~ 275 (450)
++||+||+++||...
T Consensus 480 ~~~sviv~~GDH~~~ 494 (650)
T COG1368 480 YKNSVIVLYGDHYGI 494 (650)
T ss_pred CCCcEEEEECCCCCc
Confidence 999999999999984
No 31
>PF02995 DUF229: Protein of unknown function (DUF229); InterPro: IPR004245 Members of this family are uncharacterised with a long conserved region that may contain several domains.
Probab=99.27 E-value=1.1e-10 Score=117.52 Aligned_cols=223 Identities=18% Similarity=0.281 Sum_probs=130.5
Q ss_pred cCCCCcEEEEEeCCCCCCCCCCCCCccHHHHH-hcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccCCCCCC
Q 042800 56 KLERPVVILVSSDGFRFGYQFKTPTPNIHRLI-NQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFVEPRTG 134 (450)
Q Consensus 56 ~~~~pnvvlI~iD~l~~~~~~~~~tP~l~~L~-~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~~~~~~ 134 (450)
...+|||++|++|+++..-.. ..+|-.-++. +.|...-..|..+ ...|.|+..+|+||..-....+.... .....
T Consensus 123 ~~~~~sV~ilgiDS~Sr~~f~-R~mPkT~~~l~~~~~~~f~gyn~v-gdnt~~Nl~alltG~~~~~~~~~~~~-~~~~~- 198 (497)
T PF02995_consen 123 SESKPSVLILGIDSMSRMNFR-RSMPKTVKFLRELGAVEFKGYNKV-GDNTFPNLMALLTGKIFSEKELKADC-NKPYC- 198 (497)
T ss_pred cCCCCcEEEEEeeccChhhhh-hcCcHHHHHHHhCCCEEEcccccc-CCCcHHHHHHHHhcCCCCchhhcccc-ccccC-
Confidence 467899999999999875433 4566655544 4454433466665 68999999999999621111111110 00000
Q ss_pred CcccCCCCCCCcccCCcchHhHHhcCCceEEEe-ecCccc---cCCCccCCC-c-cccc-------------------CC
Q 042800 135 DQFSPARHEPKWWLGEPLWETVANQGLKAAAYF-WAGSEV---RKGSWDCPK-G-YCMK-------------------YN 189 (450)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~---~~~~~~~~~-~-~~~~-------------------~~ 189 (450)
.+.+-.-+-+|...+++||.|+..- |+.... ...+|..++ . |..+ ..
T Consensus 199 --------~~~~d~~~~iw~~fk~~GY~T~~~ED~~~~~~f~y~~~GF~~~ptDhy~rpf~~~~e~~~~~~~~~~~~C~g 270 (497)
T PF02995_consen 199 --------KGYLDKCPFIWKDFKKAGYVTAYAEDWPSIGTFNYRKKGFKKQPTDHYLRPFMLAAEKHLNKFRRFGLKCLG 270 (497)
T ss_pred --------CCCcccccHHHHHHhhcCceEEEecCcccccccccCCCCCCCCCCCcccchHHHHHHHhccceeccCCCccC
Confidence 0011112568999999999996531 222111 111222111 1 1100 01
Q ss_pred CCCChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEE
Q 042800 190 SSVPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILL 269 (450)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivt 269 (450)
.....+..++.+.+++.. -.+.|.|.++++...+ | .+.+.+..+|..+-++++.+++.|+++||+|||+
T Consensus 271 ~~~~~~~~~dy~~~f~~~-y~~~~~F~~~w~~~~~---h-------~~~~~~~~~D~~~~~~l~~~~~~g~l~nT~vi~~ 339 (497)
T PF02995_consen 271 GRESHEYLLDYIEQFMEA-YKDRPKFGFFWFNSLS---H-------DDFNGPSSLDDDLLDFLEKLQEEGVLDNTFVIFM 339 (497)
T ss_pred chHHHHHHHHHHHHHHHH-hhccceeeEEEecccc---c-------cccchhHHHHHHHHHHHHHhhhcCcccccEEEEE
Confidence 111122223444444433 2467888888887764 2 2445788899999999999999999999999999
Q ss_pred cCCCCCCCCCCcEEEccccCCcCCCCCCeEeeccceEEEeCCCC
Q 042800 270 GDHGMVGTCEDKVIFLDDLAPWVKIPADWVHSYFPLLAIWPPAG 313 (450)
Q Consensus 270 sDHG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 313 (450)
||||.-.- . .......+.+.+-|++.|+.|+.
T Consensus 340 SDHG~R~g---------~---~r~t~~G~~EerlP~l~i~lP~~ 371 (497)
T PF02995_consen 340 SDHGLRFG---------S---FRETSQGKLEERLPFLFISLPPW 371 (497)
T ss_pred cCCCcccC---------c---cccccccchhhcCccceeEcCHH
Confidence 99998421 1 11112344556788888877653
No 32
>COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=99.09 E-value=4e-08 Score=95.36 Aligned_cols=79 Identities=19% Similarity=0.223 Sum_probs=67.0
Q ss_pred CChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcC
Q 042800 192 VPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGD 271 (450)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsD 271 (450)
..+.+.++.+++.|. ++++.|||+|--..+|+.+|...+. .....+..+|++++..++..++. .+|+||+|+|
T Consensus 280 PsLaeMt~kAi~~L~--kn~~GFFLMVEGg~ID~a~Hand~~--~~i~e~~~fd~Avq~al~fA~k~---~~TLVIvTAD 352 (482)
T COG1785 280 PSLAEMTEKAIDLLS--KNKKGFFLMVEGGRIDWAGHANDPA--GAIGETVAFDEAVQAALDFAEKD---GNTLVIVTAD 352 (482)
T ss_pred CcHHHHHHHHHHHhc--cCCCceEEEEeccccchhhcCcCHH--HHHHHHHHHHHHHHHHHHHHhcC---CCeEEEEecc
Confidence 456778889999886 5668999999999999999988553 45668899999999999999987 5999999999
Q ss_pred CCCCCC
Q 042800 272 HGMVGT 277 (450)
Q Consensus 272 HG~~~~ 277 (450)
|=....
T Consensus 353 H~tgg~ 358 (482)
T COG1785 353 HETGGL 358 (482)
T ss_pred ccCCce
Confidence 977543
No 33
>PRK10518 alkaline phosphatase; Provisional
Probab=98.85 E-value=2e-07 Score=91.75 Aligned_cols=78 Identities=15% Similarity=0.237 Sum_probs=67.6
Q ss_pred CChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcC
Q 042800 192 VPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGD 271 (450)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsD 271 (450)
..+.+.++.+++.|+ ++++.|||+|--..+|+..|... .......+..+|+.|+..++..++.+ ||+||||+|
T Consensus 324 PsLaeMT~kAI~~Ls--kn~~GFFLmVEGg~ID~a~H~nd--a~~~i~E~~~fD~AV~~A~~~~~~~~---dTLVIVTAD 396 (476)
T PRK10518 324 PTLAQMTDKAIDLLK--KNEKGFFLQVEGASIDKQDHAAN--PCGQIGETVDLDEAVQKALEFARKDG---NTLVIVTAD 396 (476)
T ss_pred CCHHHHHHHHHHHhc--cCCCceEEEeeccccchhhccCC--HHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEEEEcc
Confidence 456788899999996 46789999999999999999873 45677788899999999999999864 999999999
Q ss_pred CCCCC
Q 042800 272 HGMVG 276 (450)
Q Consensus 272 HG~~~ 276 (450)
|++..
T Consensus 397 H~h~~ 401 (476)
T PRK10518 397 HAHSS 401 (476)
T ss_pred CCCcc
Confidence 99964
No 34
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=98.81 E-value=9.8e-08 Score=88.43 Aligned_cols=111 Identities=20% Similarity=0.203 Sum_probs=77.8
Q ss_pred CcchHhHHhcCCceEEEeecCccccCCCccCCCcccccCCCCCChHHHHHHHHhcccCCCCCCCcEEEEcccCCC-CCCC
Q 042800 150 EPLWETVANQGLKAAAYFWAGSEVRKGSWDCPKGYCMKYNSSVPFEERVDTVLSYFDLPSDEIPAFTALYFEDPD-SHGH 228 (450)
Q Consensus 150 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d-~~~h 228 (450)
+++.+.|.++|..+..+.--..-+. ...+...+ ...+..+.+|..++.++. .+.-.|++.++.+-| ..||
T Consensus 227 ~tvl~~L~e~g~~vi~IGKI~DI~~------~~Git~~~-~~~~n~~~~d~tl~~~~~--~~~~~~vFtNlVdfD~~yGH 297 (397)
T COG1015 227 PTVLDKLKEAGRPVIAIGKIADIYA------GQGITEKV-KAVSNMDGMDVTLEEMKT--AEFNGLVFTNLVDFDSLYGH 297 (397)
T ss_pred hhHHHHHHHcCCceEEEeeHHhhhc------cccccccc-cCCCcHHHHHHHHHHHhc--CCCCcEEEEeeeeccccccc
Confidence 4677888889988766531111111 01111111 223445677888888863 233479999999999 7899
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCC
Q 042800 229 VVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVG 276 (450)
Q Consensus 229 ~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~ 276 (450)
+-. -..|.++++.+|+.+.+|++.|+ ++-++|+|+|||--+
T Consensus 298 RrD--v~gYa~aLe~FD~rL~e~~~~l~-----edDlLiiTADHGnDP 338 (397)
T COG1015 298 RRD--VAGYAAALEEFDRRLPELIENLR-----EDDLLIITADHGNDP 338 (397)
T ss_pred ccc--hHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEecCCCCCC
Confidence 874 46799999999999999999998 477999999999844
No 35
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=98.64 E-value=8.6e-07 Score=89.58 Aligned_cols=219 Identities=16% Similarity=0.153 Sum_probs=127.5
Q ss_pred CCcEEEEEeCCCCCCC-----CCCCCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccCCCCC
Q 042800 59 RPVVILVSSDGFRFGY-----QFKTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFVEPRT 133 (450)
Q Consensus 59 ~pnvvlI~iD~l~~~~-----~~~~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~~~~~ 133 (450)
+.++|+|+-+..|++. -.+..||.|+++.++=+.|.+++++ .+.|..|..+|++=. |..+.- +
T Consensus 231 ~~~~VLVIGESaR~~n~~L~GY~R~TtP~L~~~~~~~~~f~~~~Sc--gt~Ta~Slpcmfs~~-~r~~~~-------~-- 298 (555)
T COG2194 231 PRTVVLVIGESARRDNMSLYGYPRETTPFLAKLRGPLTVFFNAYSC--GTATALSLPCMFSRD-PRENYS-------E-- 298 (555)
T ss_pred CcEEEEEEechhhHhhccccCCCCCCChhHHhccCCceeecccccc--ccceeeeehhhcccC-chhccc-------c--
Confidence 4468888999999883 1456789887765544778777766 688999888888742 222210 0
Q ss_pred CCcccCCCCCCCcccCCcchHhHHhcCCceEEEeecCccccCCCccCC---------Ccccc--cCCCCCChHHH-HHHH
Q 042800 134 GDQFSPARHEPKWWLGEPLWETVANQGLKAAAYFWAGSEVRKGSWDCP---------KGYCM--KYNSSVPFEER-VDTV 201 (450)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~~~~-~~~~ 201 (450)
.++...+.+.+.++++|+++ +|-... ....+... ..+.. .-++...+++. +...
T Consensus 299 ----------~~~~~~~Nl~dilkrAG~~t---~W~~nq-~~~k~~~~~~~~~~~~d~~~~~~~~~~~~~~~De~LL~~~ 364 (555)
T COG2194 299 ----------QKALHQDNLLDLLKRAGYKT---FWISNQ-TGCKGVTDRIPIANRADENYFLKGYCNGGNCYDEALLPDL 364 (555)
T ss_pred ----------ccccccccHHHHHHHcCCeE---EeeccC-cccccchhhchhhhhhhhhccccccccCcccchHHHhHhH
Confidence 01112357889999999999 443322 11111110 01111 11112223322 2233
Q ss_pred HhcccCCCCCCCcEEEEcccCCCCC-CC-------CCCCC---------c-----HHHHHHHHHHHHHHHHHHHHHHHcC
Q 042800 202 LSYFDLPSDEIPAFTALYFEDPDSH-GH-------VVGPD---------D-----VAITKAVARIDSMIGRLIDGLEKRG 259 (450)
Q Consensus 202 ~~~l~~~~~~~P~fl~~~~~~~d~~-~h-------~~g~~---------~-----~~~~~~~~~~D~~ig~ll~~l~~~g 259 (450)
.+.++. +..+.-|+.+|..+-|.. .. .+.|. + ..|.+.+.+.|..|.++++.|+++.
T Consensus 365 ~~~l~~-~~~~~~~IVLH~~GSHp~Y~~Ryp~~~~kF~p~c~~~~~~~c~~~~lvN~YDNtilYtD~~L~~vi~~Lk~~~ 443 (555)
T COG2194 365 DQVLAQ-ELSQKKLIVLHLMGSHPNYYDRYPKEFAKFTPTCDTNDISSCSQEQLVNCYDNTILYTDYFLSKLIDQLKDKK 443 (555)
T ss_pred HHHhhc-cCCCCeEEEEEccCCCccHhhhCCHHHhccCCCCCccccccCcHHHHHHhhhchhhhhHHHHHHHHHHHHhCC
Confidence 333331 123447999999999931 11 11221 1 2388999999999999999999987
Q ss_pred CCCCeEEEEEcCCCCCCCCCCcEEEccccCCcCCCCCCeEeeccceEEEeCC
Q 042800 260 VFKDVTVILLGDHGMVGTCEDKVIFLDDLAPWVKIPADWVHSYFPLLAIWPP 311 (450)
Q Consensus 260 ~~~nT~vivtsDHG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~ 311 (450)
++|.+|++||||.+-. ++..++....... ..-.+.+.|++++..+
T Consensus 444 --~~~~liY~SDHGEslg--En~~ylhg~p~~~---ap~~q~~VP~i~w~S~ 488 (555)
T COG2194 444 --DNTSLIYFSDHGESLG--ENGPYLHGTPYEI---APQEQYHVPFIVWSSD 488 (555)
T ss_pred --CCeEEEEEcCccHhhc--cCCcccccCcccC---CchhheeeeEEEEECh
Confidence 4999999999999643 1223333221100 1112356788777653
No 36
>PF08665 PglZ: PglZ domain; InterPro: IPR013973 This entry is a member of the Alkaline phosphatase clan.
Probab=98.61 E-value=1.2e-07 Score=82.75 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=41.8
Q ss_pred CCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHH-----HHHHHHHHHHHHcCCCCCeEEEEEcCCCCCCC
Q 042800 212 IPAFTALYFEDPDSHGHVVGPDDVAITKAVARID-----SMIGRLIDGLEKRGVFKDVTVILLGDHGMVGT 277 (450)
Q Consensus 212 ~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D-----~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~~ 277 (450)
...++++++...|..+|...........+.+.++ ..|.+++..|.+. .+.|+||||||+.-.
T Consensus 111 ~~~vv~vv~n~ID~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~li~~l~~~----~~~V~ITsDHG~v~~ 177 (181)
T PF08665_consen 111 GTRVVYVVHNFIDDLGHKRKSEQLGFEAMYRAIELWWFEHELRSLIKELRNA----GRRVVITSDHGFVYQ 177 (181)
T ss_pred CCCEEEEEEcchhhhhCcccccchhHHHHHHHHhhhhhhHHHHHHHHHHHhc----CceEEEECCCCCEEe
Confidence 4469999999999999955444333333333332 2566667766665 367999999999643
No 37
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=2.1e-06 Score=82.72 Aligned_cols=76 Identities=28% Similarity=0.463 Sum_probs=63.4
Q ss_pred CChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcC
Q 042800 192 VPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGD 271 (450)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsD 271 (450)
.+-.+.++.+++.+ ++++.+++.+.|..||-+||.- .-....++++.+|.+||++++.+++.| ..++||+|
T Consensus 371 MSa~evtd~~~~~i---~~g~~D~iV~N~ANpDMVGHTG--~~eatiKAvEavD~~lg~ivd~~~~~g----g~~~iTaD 441 (509)
T COG0696 371 MSAKEVTDALVEAI---EKGKYDLIVLNYANPDMVGHTG--NFEATIKAVEAVDECLGRIVDAVKKNG----GTLLITAD 441 (509)
T ss_pred cchHHHHHHHHHHH---hCCCCCEEEEecCCCccCcccc--cHHHHHHHHHHHHHHHHHHHHHHHhcC----CeEEEeec
Confidence 34456678888887 4678899999999999999964 345677899999999999999999964 78999999
Q ss_pred CCCCC
Q 042800 272 HGMVG 276 (450)
Q Consensus 272 HG~~~ 276 (450)
||-+.
T Consensus 442 HGNaE 446 (509)
T COG0696 442 HGNAE 446 (509)
T ss_pred Ccchh
Confidence 99864
No 38
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=98.38 E-value=1e-05 Score=75.00 Aligned_cols=71 Identities=24% Similarity=0.329 Sum_probs=58.2
Q ss_pred HHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCC
Q 042800 196 ERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMV 275 (450)
Q Consensus 196 ~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~ 275 (450)
+..+.+.+.+ ...+-.++.+++..||-.||.- +-+....+++..|.+||+|++++++.| .++++|+|||-+
T Consensus 391 eva~ka~~~i---e~G~~p~v~vNlappDMVGHTG--~~EAtv~AcEatD~aig~Iy~A~~~~~----y~lvvTADHGNA 461 (531)
T KOG4513|consen 391 EVAEKARDAI---ESGKFPQVRVNLAPPDMVGHTG--DIEATVVACEATDEAIGKIYDAIEQVG----YILVVTADHGNA 461 (531)
T ss_pred HHHHHHHHHH---HcCCCCeEEEcCCCccccCccc--chhhhhhHHHHHHHHHHHHHHHHHhcC----cEEEEEcCCCCH
Confidence 3456666666 3566678999999999999974 334567789999999999999999964 789999999985
No 39
>TIGR03397 acid_phos_Burk acid phosphatase, Burkholderia-type. A member of this family, AcpA from Burkholderia mallei, has been charactized as a surface-bound glycoprotein with acid phosphatase activity, as can be shown with the colorigenic substrate 5-bromo-4-chloro-3-indolyl phosphate. This family shares regions of sequence similarity with phosphocholine-preferring phospholipase C enzymes (TIGR03396) from many of the same species.
Probab=98.13 E-value=0.00016 Score=71.53 Aligned_cols=57 Identities=25% Similarity=0.252 Sum_probs=44.5
Q ss_pred CCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcC-CCC
Q 042800 210 DEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGD-HGM 274 (450)
Q Consensus 210 ~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsD-HG~ 274 (450)
..-|-+.+|--...+ ..|.- . ..+...|..|++|++.|++.+.++||+||||+| ||.
T Consensus 342 g~LPqvSfI~P~~~~-d~Hp~--~-----s~v~~gD~~vg~vl~aL~~~p~w~NTlII~T~DENGG 399 (483)
T TIGR03397 342 GKLPQVSFYKPQGNL-NEHAG--Y-----ADVAAGDRHIADVIAHLQKSPQWKNMVVIVTYDENGG 399 (483)
T ss_pred CCCCcEEEEeCCCCC-CCCcC--C-----CCHHHHHHHHHHHHHHHHhCccccCcEEEEEEECCCC
Confidence 456888877655443 23321 1 148999999999999999999999999999999 884
No 40
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=98.05 E-value=1.5e-05 Score=78.03 Aligned_cols=71 Identities=23% Similarity=0.425 Sum_probs=60.8
Q ss_pred ChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCC
Q 042800 193 PFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDH 272 (450)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDH 272 (450)
.+...++.+++.++ +.+|+++++..+|..||.- +-.++.++++.+|+.|+++++.+++ ++++||||+||
T Consensus 279 ~~~~k~~~~~~~l~-----~~Dfv~vh~~~~D~~GH~g--d~~~k~~aiE~iD~~l~~il~~l~~----~~~~liITaDH 347 (412)
T PRK04024 279 NYMAKAKAAVELLK-----EYDFVLLNIKGTDEAGHDG--DFEGKVEVIEKIDKMLGYILDNLDL----DEVYIAVTGDH 347 (412)
T ss_pred CHHHHHHHHHHHhc-----cCCEEEEeccCcchhhcCC--CHHHHHHHHHHHHHHHHHHHHHhhc----CCCEEEEecCC
Confidence 45666778887773 5899999999999999976 4568999999999999999999864 46799999999
Q ss_pred CC
Q 042800 273 GM 274 (450)
Q Consensus 273 G~ 274 (450)
|-
T Consensus 348 gt 349 (412)
T PRK04024 348 ST 349 (412)
T ss_pred CC
Confidence 98
No 41
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=98.04 E-value=2e-05 Score=77.03 Aligned_cols=79 Identities=20% Similarity=0.218 Sum_probs=67.6
Q ss_pred CChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcC
Q 042800 192 VPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGD 271 (450)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsD 271 (450)
..+.+.++.+++.|+ ++++.|||+|--..+|+.+|.. +.......+..+|++|+..++..++ .++|+||+|+|
T Consensus 234 PsL~eMt~~Al~~L~--~~~~GFfLmVEgg~ID~a~H~n--d~~~~i~E~~~fd~AV~~a~~~~~~---~~dTLiiVTAD 306 (419)
T smart00098 234 PSLAEMTEVAIRLLS--KNERGFFLMVEGGRIDHAHHEN--DACGALHETVDFDQAIQAALEFAKK---EDETLVIVTAD 306 (419)
T ss_pred CCHHHHHHHHHHHhh--cCCCceEEEEecccCChhhccC--CHHHHHHHHHHHHHHHHHHHHHhhC---CCCcEEEEEec
Confidence 456778899999996 4578999999999999999987 4456777889999999999999987 37999999999
Q ss_pred CCCCCC
Q 042800 272 HGMVGT 277 (450)
Q Consensus 272 HG~~~~ 277 (450)
|+....
T Consensus 307 H~~g~~ 312 (419)
T smart00098 307 HSHVGT 312 (419)
T ss_pred CCCccc
Confidence 998643
No 42
>TIGR02687 conserved hypothetical protein TIGR02687. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 880 amino acids in length. This protein is repeatedly found upstream of another uncharacterized protein of about 470 amino acids in length, modeled by TIGR02688.
Probab=98.03 E-value=1.1e-05 Score=85.76 Aligned_cols=60 Identities=18% Similarity=0.399 Sum_probs=51.4
Q ss_pred CCcEEEEcccCCCCCCCCCCCCcH---HHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCCC
Q 042800 212 IPAFTALYFEDPDSHGHVVGPDDV---AITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVGT 277 (450)
Q Consensus 212 ~P~fl~~~~~~~d~~~h~~g~~~~---~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~~ 277 (450)
.+.++|+|+..+|..||..++.+. +..++++.++..|++|++.+. -+.||||+|||+...
T Consensus 569 ~~~~vyiY~~~ID~~g~~~~~e~~~f~a~~~~l~el~~~v~~l~~~l~------~~~i~iTADHGfi~~ 631 (844)
T TIGR02687 569 DKRVIYIYHNKIDATGDKQSSEENVFEAVEETIVELKKLVKYLINRLN------GTNIIVTADHGFLYQ 631 (844)
T ss_pred CCcEEEEecCccchhhcccCCcchHHHHHHHHHHHHHHHHHHHHHhcC------CcEEEEECCCccccc
Confidence 467999999999999999998875 677888889999999888764 358999999999755
No 43
>PF00245 Alk_phosphatase: Alkaline phosphatase; InterPro: IPR001952 This entry represents alkaline phosphatases (3.1.3.1 from EC) (ALP), which act as non-specific phosphomonoesterases to hydrolyse phosphate esters, optimally at high pH. The reaction mechanism involves the attack of a serine alkoxide on a phosphorus of the substrate to form a transient covalent enzyme-phosphate complex, followed by the hydrolysis of the serine phosphate. Alkaline phosphatases are found in all kingdoms of life, with the exception of some plants. Alkaline phosphatases are metalloenzymes that exist as a dimer, each monomer binding metal ions. The metal ions they carry can differ, although zinc and magnesium are the most common. For example, Escherichia coli alkaline phosphatase (encoded by phoA) requires the presence of two zinc ions bound at the M1 and M2 metal sites, and one magnesium ion bound at the M3 site []. However, alkaline phosphatases from Thermotoga maritima and Bacillus subtilis require cobalt for maximal activity []. In mammals, there are four alkaline phosphatase isozymes: placental, placental-like (germ cell), intestinal and tissue-nonspecific (liver/bone/kidney). All four isozymes are anchored to the outer surface of the plasma membrane by a covalently attached glycosylphosphatidylinositol (GPI) anchor []. Human alkaline phosphatases have four metal binding sites: two for zinc, one for magnesium, and one for calcium ion. Placental alkaline phosphatase (ALPP or PLAP) is highly polymorphic, with at least three common alleles []. Its activity is down-regulated by a number of effectors such as l-phenylalanine, 5'-AMP, and by p-nitrophenyl-phosphonate (PNPPate) []. The placental-like isozyme (ALPPL or PLAP-like) is elevated in germ cell tumours. The intestinal isozyme (ALPI or IAP) has the ability to detoxify lipopolysaccharide and prevent bacterial invasion across the gut mucosal barrier []. The tissue-nonspecific isozyme (ALPL) is, and may play a role in skeletal mineralisation. Defects in ALPL are a cause of hypophosphatasia, including infantile-type (OMIM:241500), childhood-type (OMIM:241510) and adult-type (OMIM:146300). Hhypophosphatasia is an inherited metabolic bone disease characterised by defective skeletal mineralisation []. This entry also contains the related enzyme streptomycin-6-phosphate phosphatase (3.1.3.39 from EC) (encoded by strK) from Streptomyces species. This enzyme is involved in the synthesis of the antibiotic streptomycin, specifically cleaving both streptomycin-6-phosphate and, more slowly, streptomycin-3-phosphate [].; GO: 0016791 phosphatase activity, 0008152 metabolic process; PDB: 1AJD_B 1ALH_B 2ANH_B 3BDF_A 1ELZ_B 1ELX_B 1B8J_B 2GA3_A 1ANJ_B 1Y6V_B ....
Probab=97.70 E-value=4.5e-05 Score=75.18 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=64.6
Q ss_pred ChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCC
Q 042800 193 PFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDH 272 (450)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDH 272 (450)
.+.+.++.+++.|. ++++.|||+|--..+|+.+|... .......+..+|+.|+..++..++. +||+||+|+||
T Consensus 238 sL~eMt~~Al~~L~--~~~~GFfLmVEg~~ID~a~H~nd--~~~~i~E~~~fD~AV~~a~~~~~~~---~~TLiIVTADH 310 (421)
T PF00245_consen 238 SLAEMTEKALEVLS--KNPKGFFLMVEGGRIDWAGHAND--AARAIEETLEFDDAVKVALDFAEKD---DDTLIIVTADH 310 (421)
T ss_dssp HHHHHHHHHHHHHT--TSTT-EEEEEEETHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHC---SSEEEEEEESS
T ss_pred CHHHHHHHHHHHHh--hCCCCcEEEecccchhhhhhhch--HHHHHHHHHHHHHHHHHHHHHhccC---CCeEEEEEecc
Confidence 45677889999997 46689999999999999999874 3567788999999999999999855 79999999999
Q ss_pred CCC
Q 042800 273 GMV 275 (450)
Q Consensus 273 G~~ 275 (450)
+..
T Consensus 311 etg 313 (421)
T PF00245_consen 311 ETG 313 (421)
T ss_dssp EES
T ss_pred cCc
Confidence 986
No 44
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=97.67 E-value=0.00014 Score=70.97 Aligned_cols=71 Identities=24% Similarity=0.348 Sum_probs=58.4
Q ss_pred hHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCC
Q 042800 194 FEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHG 273 (450)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG 273 (450)
+....+.+++.++ +-+|+++++..+|..+|.- +..++.++++.+|+.++++++.|++ ++.+||||+|||
T Consensus 274 ~~~k~~~~~~~l~-----~yDfv~v~~~~~D~aGH~g--d~~~k~~aIE~iD~~l~~~l~~l~~----~~~~liiTaDHg 342 (396)
T TIGR00306 274 YRGKVRALILALE-----EYDFVLVHTKGPDEAGHDG--DPELKVRAIEKIDSKIVGPLLALDL----DETRLILTADHS 342 (396)
T ss_pred HHHHHHHHHHHhh-----cCCEEEEEecCCChhhhcC--CHHHHHHHHHHHHHHHHHHHHHhhh----CCCEEEEeCCCC
Confidence 4445556666653 4689999999999999976 6678999999999999999999865 467999999999
Q ss_pred CC
Q 042800 274 MV 275 (450)
Q Consensus 274 ~~ 275 (450)
-.
T Consensus 343 tp 344 (396)
T TIGR00306 343 TP 344 (396)
T ss_pred CC
Confidence 74
No 45
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=97.35 E-value=0.00071 Score=66.22 Aligned_cols=72 Identities=29% Similarity=0.482 Sum_probs=57.5
Q ss_pred ChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHH-HHHHHHHHHHcCCCCCeEEEEEcC
Q 042800 193 PFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSM-IGRLIDGLEKRGVFKDVTVILLGD 271 (450)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~-ig~ll~~l~~~g~~~nT~vivtsD 271 (450)
.+...++.+++.++ +-+|+++++..+|..+|.- +-.+-.++++.+|+. ++.|++.|++. ++.+||||||
T Consensus 269 ~~~~k~~~a~~~l~-----~~DfV~vh~~~~D~aGH~g--d~~~kv~aiE~lD~~~~~~ll~al~~~---~~~~l~it~D 338 (395)
T PRK04200 269 NYEGKAEAALEALK-----THDFVFVHVEAPDEAGHEG--DLEAKIKAIEDIDERVVGPILEALKKY---EDYRILVLPD 338 (395)
T ss_pred chHHHHHHHHHHhc-----cCCEEEEEecCcchhhccC--CHHHHHHHHHHHHHHhHHHHHHHHHhc---CCCEEEEecc
Confidence 34555667777763 4689999999999999965 456778899999998 55899999752 3679999999
Q ss_pred CCC
Q 042800 272 HGM 274 (450)
Q Consensus 272 HG~ 274 (450)
||-
T Consensus 339 H~t 341 (395)
T PRK04200 339 HPT 341 (395)
T ss_pred CCc
Confidence 994
No 46
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=97.29 E-value=0.0009 Score=65.53 Aligned_cols=73 Identities=32% Similarity=0.489 Sum_probs=57.1
Q ss_pred ChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHH-HHHHHHHHHHcCCCCCeEEEEEcC
Q 042800 193 PFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSM-IGRLIDGLEKRGVFKDVTVILLGD 271 (450)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~-ig~ll~~l~~~g~~~nT~vivtsD 271 (450)
.+...++.+++.++ +-+|+++++..+|..+|.- +-.+-.++++.+|+. ++.+++.|++.| ++++||||||
T Consensus 270 ~~~~k~~~~~~~l~-----~~Dfv~vh~~~~D~aGH~g--d~~~kv~aIE~lD~~~~~~ll~al~~~~--~~~~~~vt~D 340 (396)
T TIGR02535 270 NYEGKVRAALEALE-----TYDFVVVHVEAPDEAGHEG--DLEAKIKAIELIDSRIVGPLLEALSDRD--EPFRILVLPD 340 (396)
T ss_pred chHHHHHHHHHHHh-----hCCEEEEEeCCCChhhccC--CHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEEeee
Confidence 34445666666663 3578999999999999965 556788899999997 558999997654 3569999999
Q ss_pred CCC
Q 042800 272 HGM 274 (450)
Q Consensus 272 HG~ 274 (450)
||-
T Consensus 341 H~t 343 (396)
T TIGR02535 341 HPT 343 (396)
T ss_pred Ccc
Confidence 995
No 47
>PF04185 Phosphoesterase: Phosphoesterase family; InterPro: IPR007312 This entry includes both bacterial phospholipase C enzymes (3.1.4.3 from EC) and eukaryotic acid phosphatases 3.1.3.2 from EC.; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2D1G_B.
Probab=96.99 E-value=0.003 Score=61.96 Aligned_cols=178 Identities=15% Similarity=0.183 Sum_probs=86.9
Q ss_pred CCCCCCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccCCCCCCCcccCCCCCCCcccCCcch
Q 042800 74 YQFKTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFVEPRTGDQFSPARHEPKWWLGEPLW 153 (450)
Q Consensus 74 ~~~~~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (450)
|.....+|++.+||++.+.++|.|+++ +.-|.|+|..+++|..- |...+. .+..... .......+++
T Consensus 117 ~y~~~~~P~~~~LA~~f~l~Dnyf~s~-~~pS~PNr~~l~sG~~~---~~~~~~--~~~~~~~-------~~~~~~~ti~ 183 (376)
T PF04185_consen 117 YYTPADLPFLWALADQFTLCDNYFCSV-PGPSQPNRLYLISGTSD---GVGNNG--NPFIDNP-------SPPFSWPTIF 183 (376)
T ss_dssp E--TTTSHHHHHHHHHSEEESSEE-SS-SS-HHHHHHHHHHS------TT-STS---TTS-EE-------ES------HH
T ss_pred eeCCCCChHHHHHHhheEEecccccCC-CCCCCCCceEEEeeccC---ccccCC--CCceecC-------CCCcccccHH
Confidence 345678999999999999999988776 67899999999999872 221110 0000000 0011235899
Q ss_pred HhHHhcCCceEEEe--ecCccccCCCccCCC----------cccccCCC---CCChHHHHHHHHhcccCCCCCCCcEEEE
Q 042800 154 ETVANQGLKAAAYF--WAGSEVRKGSWDCPK----------GYCMKYNS---SVPFEERVDTVLSYFDLPSDEIPAFTAL 218 (450)
Q Consensus 154 ~~~~~~G~~~~~~~--~~~~~~~~~~~~~~~----------~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~P~fl~~ 218 (450)
+.|.++|..-..|. ++...........+. .+...... .......+++..+.++ ...-|-|.+|
T Consensus 184 d~L~~aGisW~~Y~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~d~~--~g~LP~~sfI 261 (376)
T PF04185_consen 184 DRLSAAGISWKWYQEGYPNPGDNGLAGFDPYFDYFYQPFNPPSFGSYSPNPDRANHIVPLSQFYADLA--NGTLPQVSFI 261 (376)
T ss_dssp HHHHHHT--EEEEETT-S-SEEETTEEE---EEE-TTS-E--S-GGGTTSBSTTTTEEECHHHHHHHH--TT---SEEEE
T ss_pred HHHHHcCCceEeCeecCCccCcccccccccchhhhhcccccccccccccccccccccchHHHHHHHHH--cCCCCceEEE
Confidence 99999998866653 111110000000000 00000000 0000000122233332 3456888877
Q ss_pred cccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCC
Q 042800 219 YFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGM 274 (450)
Q Consensus 219 ~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~ 274 (450)
.....+ .+|-. . ..+..-|..|++++++|.....+++|+||||=|-+.
T Consensus 262 ~p~~~~-d~Hp~--~-----~~~~~gd~~l~~vv~ai~~sp~W~~T~iiIt~DE~g 309 (376)
T PF04185_consen 262 EPNMCN-DMHPP--Y-----SVIADGDAFLARVVEAIRNSPYWKNTAIIITYDENG 309 (376)
T ss_dssp E--GGG-S--TT--T-------HHHHHHHHHHHHHHHHCSTTGGGEEEEEEES--T
T ss_pred EecCcC-CCCCC--C-----CchhHHHHHHHHHHHHHhcCcCcCCeEEEEEEecCC
Confidence 763322 12311 1 135788999999999999999999999999988654
No 48
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=96.86 E-value=0.003 Score=61.18 Aligned_cols=69 Identities=20% Similarity=0.334 Sum_probs=53.4
Q ss_pred ChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCC
Q 042800 193 PFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDH 272 (450)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDH 272 (450)
.+....+.+++.++ +-+|+++++..||..+|.- +-.+-.++|+.+|+.|..|+ .+ +++.|+|||||
T Consensus 265 ~~~~k~~~a~~~l~-----~~DfV~vhvk~~DeaGH~g--d~~~Kv~~IE~iD~~l~~ll-~l------~~~~ivVT~DH 330 (395)
T PRK04135 265 TLEDEIKTLKENWN-----DYDFFFLHVKKTDSYGEDG--NFEEKVKVIEEVDALLPEIL-AL------KPDVLVITGDH 330 (395)
T ss_pred CHHHHHHHHHHHHh-----cCCEEEEEeccCchhhccC--CHHHHHHHHHHHHHHHHHHh-cC------CCcEEEEeCCC
Confidence 44445555665552 4689999999999999965 44567789999999999888 55 25599999999
Q ss_pred CCC
Q 042800 273 GMV 275 (450)
Q Consensus 273 G~~ 275 (450)
+-.
T Consensus 331 ~TP 333 (395)
T PRK04135 331 STP 333 (395)
T ss_pred CCc
Confidence 974
No 49
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=96.85 E-value=0.0028 Score=59.72 Aligned_cols=70 Identities=21% Similarity=0.374 Sum_probs=54.9
Q ss_pred ChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCC
Q 042800 193 PFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDH 272 (450)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDH 272 (450)
.+...+..+++.++ .-+|+++|+-.+|..+|.- +-+.-.++|+.+|..|+.+++ ++. ++++|++|+||
T Consensus 282 n~~~k~k~a~eal~-----~yDfv~vhik~tDeagHdG--~~e~Kv~~IE~iD~~i~pll~-~~~----~~~~i~vt~DH 349 (408)
T COG3635 282 NYRGKAKAAIEALK-----EYDFVFVHIKATDEAGHDG--DFEGKVRVIEDIDKAIGPLLD-LDL----DEDVIAVTGDH 349 (408)
T ss_pred cHHHHHHHHHHHHh-----hCCEEEEEeccCccccCCC--CHHHhHHHHHHHHHHhhhhhc-ccc----CCcEEEEeCCC
Confidence 34455666666663 5689999999999999975 334567799999999999998 432 68999999999
Q ss_pred CC
Q 042800 273 GM 274 (450)
Q Consensus 273 G~ 274 (450)
--
T Consensus 350 sT 351 (408)
T COG3635 350 ST 351 (408)
T ss_pred CC
Confidence 75
No 50
>KOG4126 consensus Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0048 Score=60.36 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=61.9
Q ss_pred CChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcC
Q 042800 192 VPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGD 271 (450)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsD 271 (450)
..+.+.++.+++.|. +.++=||++|--.-.|+..|... ....+....++|++|+..++..++ ++|+||+|||
T Consensus 325 PsL~eMte~Al~vL~--~~~~GffLfVEGgrID~ghH~~~--a~~aL~Et~ef~~Aiq~a~~~t~~----~dTLivvTaD 396 (529)
T KOG4126|consen 325 PSLSEMTEKALEVLS--KNSKGFFLFVEGGRIDHGHHETD--ARQALDETLEFDKAIQRALELTSE----EDTLIVVTAD 396 (529)
T ss_pred CCHHHHHHHHHHHHh--hCCCceEEEEecccccccccccH--HHHHHHHHHHHHHHHHHHHHhcCc----cCCEEEEecc
Confidence 345677889999987 45778999999999998888653 334566778889999998888776 7899999999
Q ss_pred CCCCC
Q 042800 272 HGMVG 276 (450)
Q Consensus 272 HG~~~ 276 (450)
|.++.
T Consensus 397 Hsh~~ 401 (529)
T KOG4126|consen 397 HSHTF 401 (529)
T ss_pred cccce
Confidence 99864
No 51
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=93.45 E-value=0.65 Score=48.74 Aligned_cols=174 Identities=15% Similarity=0.108 Sum_probs=100.7
Q ss_pred CCCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCC---CC-ccCccCCCCCCCcccCCCCCCCcccCCcc
Q 042800 77 KTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASH---GI-INNRFVEPRTGDQFSPARHEPKWWLGEPL 152 (450)
Q Consensus 77 ~~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~h---Gi-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (450)
+...|.+..||++=+.+++.+|++ ++-|.|+|.-++||...... |. ..|......... . ..-+.-.++
T Consensus 146 r~dlPf~~aLAdaFTvcD~yf~S~-~g~T~PNR~~~~sGt~~~~~~~~~~~~~n~~~~~~~~~--~-----~~~~~w~Ti 217 (690)
T TIGR03396 146 REDIPFQYALADAFTICDAYHCSV-QGGTNPNRLYLWTGTNGPLGGAGGPAVTNDDDWPGIGP--G-----EGGYTWTTY 217 (690)
T ss_pred ccccHHHHHHHHHhhhhhhhcccC-CCCCCcCceeeEecccCCcccCCcceecCCcccccccc--c-----cCCCCcCcH
Confidence 457899999999999999877776 78999999999999986431 11 112100000000 0 000123689
Q ss_pred hHhHHhcCCceEEEeecCccccCCCccCCC-cccccCCC---------------CCChHHHHHHHHhcccCCCCCCCcEE
Q 042800 153 WETVANQGLKAAAYFWAGSEVRKGSWDCPK-GYCMKYNS---------------SVPFEERVDTVLSYFDLPSDEIPAFT 216 (450)
Q Consensus 153 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------~~~~~~~~~~~~~~l~~~~~~~P~fl 216 (450)
++.|+++|..-..|.-... .|...+ .++..|.. .......+++..+-++ ...-|-+.
T Consensus 218 ~e~L~~aGVSWkvYq~~~~-----n~~dnpl~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Dv~--~g~LP~VS 290 (690)
T TIGR03396 218 PERLEQAGVSWKVYQDMND-----NFTDNPLAGFKQFRNASSDNPGSPLYLGARGMSTRDLLDQLRADVQ--AGTLPQVS 290 (690)
T ss_pred HHHHHhCCCcEEEEecCCC-----ccccchhHHHHHHhhhhccCCCchhhhcccCcccccHHHHHHHHHH--cCCCCeEE
Confidence 9999999988766642111 111000 01111110 0000111123333332 34568888
Q ss_pred EEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCeEEEEEcCCCC
Q 042800 217 ALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRG-VFKDVTVILLGDHGM 274 (450)
Q Consensus 217 ~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g-~~~nT~vivtsDHG~ 274 (450)
+|.-...+ ..|-. ..+..=+..|.++++.|.+.. ++++|+||||=|-..
T Consensus 291 ~I~p~~~~-seHP~--------~~~~~G~~~i~~vl~aL~~nP~vW~~TvliItyDE~g 340 (690)
T TIGR03396 291 WIVAPAAY-SEHPG--------SSPAYGAWYVSRVLDALTANPEVWSKTVLLLNYDEND 340 (690)
T ss_pred EEecCCCC-CCCCC--------CChHHHHHHHHHHHHHHHhChhhhhceEEEEEEeCCC
Confidence 88755442 23321 234455788999999999887 599999999988643
No 52
>PF11658 DUF3260: Protein of unknown function (DUF3260); InterPro: IPR017744 This protein was identified by the partial phylogenetic profiling algorithm [] as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation [].
Probab=92.65 E-value=3.3 Score=41.33 Aligned_cols=192 Identities=15% Similarity=0.202 Sum_probs=112.1
Q ss_pred cEEEEEeCCCCCCCCC---CCCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCC-CCCCCCccCccCCCCCCCc
Q 042800 61 VVILVSSDGFRFGYQF---KTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLY-PASHGIINNRFVEPRTGDQ 136 (450)
Q Consensus 61 nvvlI~iD~l~~~~~~---~~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~-p~~hGi~~n~~~~~~~~~~ 136 (450)
-||+|-|=+++||-++ ....|-++++ -+.|+|+=++ .+.+.|+-.=++.+.= ...|.- .|++...+
T Consensus 197 DllvlnICSLsWdDl~a~gl~~hPl~~~F---Di~F~nFNSA--tSYSGPAaIRLLRASCGQ~sH~~----Ly~pa~~q- 266 (518)
T PF11658_consen 197 DLLVLNICSLSWDDLDAAGLRNHPLWKRF---DIVFDNFNSA--TSYSGPAAIRLLRASCGQPSHSD----LYQPAPQQ- 266 (518)
T ss_pred cEEEEEecccchhhHHHhCCccCchHHhh---cchhcccccc--cccchHHHHHHHHhccCCcchHh----hcCCCccc-
Confidence 6999999999998443 3345655544 6778864433 5778888766665421 111221 23332221
Q ss_pred ccCCCCCCCcccCCcchHhHHhcCCceEEEeecCcccc--------CCCccCC-------CcccccCCCCCChHHHHHHH
Q 042800 137 FSPARHEPKWWLGEPLWETVANQGLKAAAYFWAGSEVR--------KGSWDCP-------KGYCMKYNSSVPFEERVDTV 201 (450)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~--------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 201 (450)
--+|+.|++.||+...+.--...+. .++...+ +.+...++++ +..+..+-.
T Consensus 267 -------------C~LF~nLa~lGf~~~l~mnHdG~Fd~Fl~~ir~~G~l~~pl~s~~g~~~~~~~FDgS-pI~~D~~vL 332 (518)
T PF11658_consen 267 -------------CYLFDNLAKLGFTQQLMMNHDGHFDNFLQEIREDGGLQAPLMSQAGLPVALHSFDGS-PIYDDLAVL 332 (518)
T ss_pred -------------ccHHHHHHhcCCchhhccCCCCccccHHHHHHHcCCCCCCCcCCCCCchHhhccCCC-cccchHHHH
Confidence 1256777888887654431111000 0111000 0011112221 222222333
Q ss_pred HhcccC--CCCCCCcEEEEcccCCCCCCCCCCC----CcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCC
Q 042800 202 LSYFDL--PSDEIPAFTALYFEDPDSHGHVVGP----DDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMV 275 (450)
Q Consensus 202 ~~~l~~--~~~~~P~fl~~~~~~~d~~~h~~g~----~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~ 275 (450)
-+|++. ...+.|-.++++....|+-.+.-|. ....|..-.+.+=+.+.++++.||++| .+.+||++-.||..
T Consensus 333 ~rW~~~r~~~~~~~~A~~YNtIsLHDGNr~~~~~~~~s~~sY~~Ra~~Llddl~~F~~~Le~Sg--R~v~vv~VPEHGAA 410 (518)
T PF11658_consen 333 NRWLQQREKSDDGRVATFYNTISLHDGNRLPGSDRLNSLASYKPRAQKLLDDLDRFFDELEKSG--RKVMVVVVPEHGAA 410 (518)
T ss_pred HHHHHHHhhcCCCceEEEEeeeecccCCccCCCCCcccccchHHHHHHHHHHHHHHHHHHHHcC--CcEEEEEecCcccc
Confidence 444443 3456788899998888886665554 234577777888888999999999999 69999999999987
Q ss_pred CCC
Q 042800 276 GTC 278 (450)
Q Consensus 276 ~~~ 278 (450)
-..
T Consensus 411 lrG 413 (518)
T PF11658_consen 411 LRG 413 (518)
T ss_pred ccc
Confidence 543
No 53
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=92.01 E-value=0.16 Score=48.17 Aligned_cols=55 Identities=22% Similarity=0.281 Sum_probs=36.8
Q ss_pred CCcEEEEEeCCCCCC----C-----CCCCCCccHHHHHhcCceec-cccccCCCCCCchhHHhHh
Q 042800 59 RPVVILVSSDGFRFG----Y-----QFKTPTPNIHRLINQGTEAE-TGLIPVFPTYTFPNHYSIV 113 (450)
Q Consensus 59 ~pnvvlI~iD~l~~~----~-----~~~~~tP~l~~L~~~G~~~~-~~~~~~~p~~t~ps~~sl~ 113 (450)
..++|+|++||++-. . ++...|||||+|+++|..-. ..+.+-+++-|-++|.||+
T Consensus 3 ~~killiv~DGlgDrP~~~l~gkTpLq~A~tPNmD~LA~~g~~Gl~~~i~pGi~pGSd~ahLsl~ 67 (408)
T COG3635 3 KMKILLIVLDGLGDRPVEELDGKTPLQAAKTPNMDRLAKEGICGLMDPIKPGIRPGSDTAHLSLF 67 (408)
T ss_pred cceEEEEEecCCCCCcccccCCCCchhhcCCCCHHHHHhcCCcccccccCCCCCCCCCcceeeee
Confidence 457999999999742 1 24468999999999997543 1233444455555555544
No 54
>TIGR03368 cellulose_yhjU cellulose synthase operon protein YhjU. This protein was identified by the partial phylogenetic profiling algorithm (PubMed:16930487) as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation (PubMed:11929533).
Probab=91.14 E-value=4.1 Score=40.49 Aligned_cols=192 Identities=14% Similarity=0.186 Sum_probs=107.8
Q ss_pred cEEEEEeCCCCCCCCC---CCCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCC-CCCCCccCccCCCCCCCc
Q 042800 61 VVILVSSDGFRFGYQF---KTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYP-ASHGIINNRFVEPRTGDQ 136 (450)
Q Consensus 61 nvvlI~iD~l~~~~~~---~~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p-~~hGi~~n~~~~~~~~~~ 136 (450)
-||+|-|=+++||-++ ...-|-++++ -+.|+|+-+. .+.+.|+-.=++-+.=- ..|.- .|++...+
T Consensus 195 DllvlnICSLSWdDl~aa~l~~hPl~~~F---DilF~nFnSA--tSYSGPAaIRlLRASCGQ~~H~~----LY~pa~~q- 264 (518)
T TIGR03368 195 DLLVLNICSLSWDDLEAAGLRNHPLLSRF---DILFDNFNSA--TSYSGPAAIRLLRASCGQESHAD----LYDPAPEQ- 264 (518)
T ss_pred CEEEEEeccCcHHHHHHhcCccCchHHhh---cchhhccccc--cccchHHHHHHHHhccCCcchHh----hcCCcccc-
Confidence 6999999999998433 3345655544 5677764333 46777776655543211 12221 23332221
Q ss_pred ccCCCCCCCcccCCcchHhHHhcCCceEEEeecCcccc--------CCCccCC-------CcccccCCCCCChHHHHHHH
Q 042800 137 FSPARHEPKWWLGEPLWETVANQGLKAAAYFWAGSEVR--------KGSWDCP-------KGYCMKYNSSVPFEERVDTV 201 (450)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~--------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 201 (450)
--+|+.|++.||+.....--...+. .++...+ +.+...++++ +..+..+-.
T Consensus 265 -------------CyLF~nLa~lGf~~~l~lnHdG~Fd~fl~~ir~~G~~~~pl~~~~g~~~~~~aFDGS-pIy~D~~vL 330 (518)
T TIGR03368 265 -------------CHLFSNLAKLGFTENLLLNHDGHFDNFLQLVRENGGMQSPLMSQTGLPVAQRSFDGS-PIYDDYAVL 330 (518)
T ss_pred -------------chHHHHHHHcCCchhhcccCCCccchHHHHHHHcCCCCCCCcCccCCcHHHhccCCC-cccchHHHH
Confidence 1256778888888654331111000 0111000 0011112221 111222333
Q ss_pred HhcccCC--CCCCCcEEEEcccCCCCCCCCCCC---CcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCC
Q 042800 202 LSYFDLP--SDEIPAFTALYFEDPDSHGHVVGP---DDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVG 276 (450)
Q Consensus 202 ~~~l~~~--~~~~P~fl~~~~~~~d~~~h~~g~---~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~ 276 (450)
.+|++++ ..+.|--++++....|+-.|.-|. ....|..-.+.+=+.+.++++.|+++| .+.+||++-.||.+-
T Consensus 331 ~rW~~~r~~~~~~~vA~~YNtIsLHDGNr~~g~~~~s~~sY~~Ra~kLlddld~F~~~le~Sg--R~vvVv~VPEHGAAl 408 (518)
T TIGR03368 331 NRWLQERLGEPDGPVALYYNTISLHDGNRIPNSGMTSLASYPLRAKKLLDDLDRFFDELEKSG--RKVVVVLVPEHGAAL 408 (518)
T ss_pred HHHHHHhhcCCCCceEEEEeeeecccCCcCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHcC--CcEEEEEecCcchhc
Confidence 3454432 334567777888887876665552 235577778888888999999999999 699999999999875
Q ss_pred CC
Q 042800 277 TC 278 (450)
Q Consensus 277 ~~ 278 (450)
..
T Consensus 409 rG 410 (518)
T TIGR03368 409 RG 410 (518)
T ss_pred cc
Confidence 43
No 55
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=89.17 E-value=0.54 Score=46.26 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=35.9
Q ss_pred cEEEEEeCCCCCCC---------CCCCCCccHHHHHhcCceec-cccccCCCCCCchhHHhHhcCCCC
Q 042800 61 VVILVSSDGFRFGY---------QFKTPTPNIHRLINQGTEAE-TGLIPVFPTYTFPNHYSIVTGLYP 118 (450)
Q Consensus 61 nvvlI~iD~l~~~~---------~~~~~tP~l~~L~~~G~~~~-~~~~~~~p~~t~ps~~sl~TG~~p 118 (450)
++|+|++||++-.- ++...|||||+|+++|.... +.+...+++-|-+++.+|+ |.-|
T Consensus 2 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tP~lD~lA~~g~~Gl~~~v~~g~~pgSd~a~lsl~-GYdp 68 (396)
T TIGR02535 2 KYIILIGDGMADWPLEELGGRTPLQVANTPNMDKLAKRGRCGLLRTVPEGFPPGSDVANMSLL-GYDP 68 (396)
T ss_pred CEEEEEecCCCCCcccccCCCChhhccCCCcHHHHHhcCCCcceeecCCCCCCCcHHHHHHhh-CCCh
Confidence 58999999998431 24468999999999998653 1122223344444555544 4333
No 56
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=88.80 E-value=0.63 Score=45.81 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=36.3
Q ss_pred cEEEEEeCCCCCC---------CCCCCCCccHHHHHhcCceec-cccccCCCCCCchhHHhHhcCCCC
Q 042800 61 VVILVSSDGFRFG---------YQFKTPTPNIHRLINQGTEAE-TGLIPVFPTYTFPNHYSIVTGLYP 118 (450)
Q Consensus 61 nvvlI~iD~l~~~---------~~~~~~tP~l~~L~~~G~~~~-~~~~~~~p~~t~ps~~sl~TG~~p 118 (450)
++|+|++||++-. -++...|||||+|+++|.... +.+...+|+-|-+++.+|+ |.-|
T Consensus 2 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tP~lD~lA~~g~~Gl~~~v~~g~~pgSd~a~lsl~-GYdp 68 (395)
T PRK04200 2 KYIILIGDGMADEPIEELGGKTPLQAAKTPNMDKMAREGRVGLAKTVPEGFPPGSDVANMSIL-GYDP 68 (395)
T ss_pred CEEEEEecCCCCCcccccCCCCccceeCCCchHHHHhcCCcccceecCCCCCCCcHHHHHHhh-CCCh
Confidence 5899999999843 134468999999999998764 1122223344445555544 4444
No 57
>PF07394 DUF1501: Protein of unknown function (DUF1501); InterPro: IPR010869 This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.
Probab=88.67 E-value=0.8 Score=45.31 Aligned_cols=61 Identities=16% Similarity=0.301 Sum_probs=47.0
Q ss_pred CcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCCC
Q 042800 213 PAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVGT 277 (450)
Q Consensus 213 P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~~ 277 (450)
..|++|.+..=| -|.. ....+...+..+|+.|..+++.|+++|++|+|+||++||=|-+..
T Consensus 246 ~~v~~V~~gGwD--TH~~--~~~~~~~ll~~L~~alaaf~~dL~~~g~~d~t~vv~~SEFGRt~~ 306 (392)
T PF07394_consen 246 VRVVFVSLGGWD--THSN--QGNRHARLLPELDQALAAFIQDLKERGLLDDTLVVTMSEFGRTPR 306 (392)
T ss_pred CEEEEECCCCcc--Cccc--cHhHHHHHHHHHHHHHHHHHHHHHhcCCcCceEEEEeeecCCCcc
Confidence 346666665422 2322 234577788999999999999999999999999999999888643
No 58
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=87.59 E-value=0.8 Score=45.29 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=37.9
Q ss_pred cEEEEEeCCCCCCC---------CCCCCCccHHHHHhcCceec-cccccCCCCCCchhHHhHhcCCCC
Q 042800 61 VVILVSSDGFRFGY---------QFKTPTPNIHRLINQGTEAE-TGLIPVFPTYTFPNHYSIVTGLYP 118 (450)
Q Consensus 61 nvvlI~iD~l~~~~---------~~~~~tP~l~~L~~~G~~~~-~~~~~~~p~~t~ps~~sl~TG~~p 118 (450)
++|+|++||++-.- ++...|||||+|+++|+... ..+..-+|+-|-+++.||+ |.-|
T Consensus 4 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tPnlD~lA~~g~~Gl~~~v~~G~~pgSd~a~lsl~-GYdp 70 (412)
T PRK04024 4 KILLIILDGLGDRPVKELGGKTPLEAANTPNMDKLAKEGICGLMDPISPGVRPGSDTAHLAIL-GYDP 70 (412)
T ss_pred cEEEEEecCCCCCcccccCCCChhhccCCCChHHHHHcCCcccceeeCCCCCCCcHHHHhhhh-CCCh
Confidence 69999999998431 24468999999999997653 1233334455556666655 4444
No 59
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=86.51 E-value=1.1 Score=43.72 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=37.2
Q ss_pred CCcEEEEEeCCCCCCC--------CCCCCCccHHHHHhcCceec-cccccCCCCCCchhHHhHhcCCCC
Q 042800 59 RPVVILVSSDGFRFGY--------QFKTPTPNIHRLINQGTEAE-TGLIPVFPTYTFPNHYSIVTGLYP 118 (450)
Q Consensus 59 ~pnvvlI~iD~l~~~~--------~~~~~tP~l~~L~~~G~~~~-~~~~~~~p~~t~ps~~sl~TG~~p 118 (450)
..++|+|++||++-.- ++...|||||+|+++|+... +.+..-+++-|-.++.||+ |.-|
T Consensus 7 ~~K~v~ii~DGmgD~p~~e~gkTPLe~A~tPnlD~lA~~G~~Gl~~~v~~G~~pGSD~a~lsll-GYdP 74 (395)
T PRK04135 7 DSKIVLLVLDGLGGLPHPENGKTELEAAKTPNLDALAKESDLGLLIPVLPGITPGSGPGHLGLF-GYDP 74 (395)
T ss_pred CCcEEEEEecCCCCCCCCCCCCChhhccCCCChHHHHHcCCcccceeeCCCCCCCcHHHhhhhh-CCCh
Confidence 3469999999997331 23468999999999998653 1222333344445555544 5444
No 60
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=81.99 E-value=1.6 Score=42.93 Aligned_cols=51 Identities=24% Similarity=0.233 Sum_probs=32.6
Q ss_pred EEEEeCCCCCCC---------CCCCCCccHHHHHhcCceec-cccccCCCCCCchhHHhHh
Q 042800 63 ILVSSDGFRFGY---------QFKTPTPNIHRLINQGTEAE-TGLIPVFPTYTFPNHYSIV 113 (450)
Q Consensus 63 vlI~iD~l~~~~---------~~~~~tP~l~~L~~~G~~~~-~~~~~~~p~~t~ps~~sl~ 113 (450)
|+|++||++-.- ++...|||||+|+++|+... +.+..-+++-|-+++.+|+
T Consensus 1 v~~i~DG~~D~p~~~l~gkTpLe~A~tPnlD~lA~~g~~Gl~~~v~~G~~pgSd~a~l~ll 61 (396)
T TIGR00306 1 VLIIIDGLADRPLEELDGKTPLQVAKTPNMDRLAEEGICGLMRTIKEGIRPGSDTAHLSIL 61 (396)
T ss_pred CEEEecCCCCCcccccCCCCchhccCCCChHHHHhcCCeeeeeeeCCCCCCCchhhhhhhc
Confidence 589999998431 34568999999999998653 1222333444445555544
No 61
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=72.99 E-value=5.7 Score=39.38 Aligned_cols=91 Identities=14% Similarity=0.090 Sum_probs=58.0
Q ss_pred CcEEEEEeCCCCCC-------CCC-------CCCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCcc
Q 042800 60 PVVILVSSDGFRFG-------YQF-------KTPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIIN 125 (450)
Q Consensus 60 pnvvlI~iD~l~~~-------~~~-------~~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~ 125 (450)
+||||++-||++.. |.. ......++++-..|+.-+.. ...+-+.+.++-++++||.-..+ |.++
T Consensus 1 KNVIl~IgDGMg~~~~taaR~~~~~~~~~~~~~~~l~~d~~p~~~l~~T~~-~d~~vtDSAa~aTA~atG~KT~n-g~Ig 78 (419)
T smart00098 1 KNVILFIGDGMGVSTITAARILKGQAGGKLGEETLLAFDQFPTGALSKTYN-PDYQVTDSAATATAYLCGVKTYN-GAIG 78 (419)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHhcccCCCCccccccchhhcceeeeeccCC-CCCCCCcchhhheehhhcccccC-ceee
Confidence 58999999999974 211 12346677777777443322 22234788899999999976543 4443
Q ss_pred CccCCCCCCCcccCCCCCCCcccCCcchHhHHhcCCceEEEe
Q 042800 126 NRFVEPRTGDQFSPARHEPKWWLGEPLWETVANQGLKAAAYF 167 (450)
Q Consensus 126 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (450)
- ++..+. .-.++.+.++++|+.++.+.
T Consensus 79 v---d~~~~~------------~~~tIle~Ak~~G~~tGiVT 105 (419)
T smart00098 79 V---DAATGK------------EVPSVLEWAKKAGKSTGLVT 105 (419)
T ss_pred e---cCCCCC------------cchhHHHHHHHcCCcEEEEe
Confidence 2 111011 13578899999999997764
No 62
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=70.85 E-value=5.9 Score=30.26 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 042800 20 RTLFIITLLLVTCNAVSAAAL 40 (450)
Q Consensus 20 ~~~l~~~l~l~~~~~~~~~~~ 40 (450)
+.+|++.|+|++++++++..+
T Consensus 4 K~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred hHHHHHHHHHHHHHHHHhhhh
Confidence 456666666666666555443
No 63
>PF00245 Alk_phosphatase: Alkaline phosphatase; InterPro: IPR001952 This entry represents alkaline phosphatases (3.1.3.1 from EC) (ALP), which act as non-specific phosphomonoesterases to hydrolyse phosphate esters, optimally at high pH. The reaction mechanism involves the attack of a serine alkoxide on a phosphorus of the substrate to form a transient covalent enzyme-phosphate complex, followed by the hydrolysis of the serine phosphate. Alkaline phosphatases are found in all kingdoms of life, with the exception of some plants. Alkaline phosphatases are metalloenzymes that exist as a dimer, each monomer binding metal ions. The metal ions they carry can differ, although zinc and magnesium are the most common. For example, Escherichia coli alkaline phosphatase (encoded by phoA) requires the presence of two zinc ions bound at the M1 and M2 metal sites, and one magnesium ion bound at the M3 site []. However, alkaline phosphatases from Thermotoga maritima and Bacillus subtilis require cobalt for maximal activity []. In mammals, there are four alkaline phosphatase isozymes: placental, placental-like (germ cell), intestinal and tissue-nonspecific (liver/bone/kidney). All four isozymes are anchored to the outer surface of the plasma membrane by a covalently attached glycosylphosphatidylinositol (GPI) anchor []. Human alkaline phosphatases have four metal binding sites: two for zinc, one for magnesium, and one for calcium ion. Placental alkaline phosphatase (ALPP or PLAP) is highly polymorphic, with at least three common alleles []. Its activity is down-regulated by a number of effectors such as l-phenylalanine, 5'-AMP, and by p-nitrophenyl-phosphonate (PNPPate) []. The placental-like isozyme (ALPPL or PLAP-like) is elevated in germ cell tumours. The intestinal isozyme (ALPI or IAP) has the ability to detoxify lipopolysaccharide and prevent bacterial invasion across the gut mucosal barrier []. The tissue-nonspecific isozyme (ALPL) is, and may play a role in skeletal mineralisation. Defects in ALPL are a cause of hypophosphatasia, including infantile-type (OMIM:241500), childhood-type (OMIM:241510) and adult-type (OMIM:146300). Hhypophosphatasia is an inherited metabolic bone disease characterised by defective skeletal mineralisation []. This entry also contains the related enzyme streptomycin-6-phosphate phosphatase (3.1.3.39 from EC) (encoded by strK) from Streptomyces species. This enzyme is involved in the synthesis of the antibiotic streptomycin, specifically cleaving both streptomycin-6-phosphate and, more slowly, streptomycin-3-phosphate [].; GO: 0016791 phosphatase activity, 0008152 metabolic process; PDB: 1AJD_B 1ALH_B 2ANH_B 3BDF_A 1ELZ_B 1ELX_B 1B8J_B 2GA3_A 1ANJ_B 1Y6V_B ....
Probab=64.24 E-value=2 Score=42.64 Aligned_cols=90 Identities=18% Similarity=0.139 Sum_probs=50.8
Q ss_pred CcEEEEEeCCCCCC-------CC----CC--CCCccHHHHHhcCceeccccccCCCCCCchhHHhHhcCCCCCCCCCccC
Q 042800 60 PVVILVSSDGFRFG-------YQ----FK--TPTPNIHRLINQGTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINN 126 (450)
Q Consensus 60 pnvvlI~iD~l~~~-------~~----~~--~~tP~l~~L~~~G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n 126 (450)
+||||++-||++.. |. .. ...=++++|--.|..-+... ....+-+.++-++++||.-.. .|.++-
T Consensus 2 KNVI~~IgDGmg~~~~taar~~~~~~~~~~~~~~l~~d~~~~~G~~~T~~~-d~~vtDSAa~aTA~atG~Kt~-n~~igv 79 (421)
T PF00245_consen 2 KNVILFIGDGMGPSQVTAARIYKGGKNGRPGEEFLAMDKFPYVGLVRTYSS-DSQVTDSAAAATALATGVKTY-NGAIGV 79 (421)
T ss_dssp SEEEEEEETT-SHHHHHHHHHHHHHHTTSCTTTSCTGGGSSEEEEEE--ES-SSSS--HHHHHHHHHHSS--B-TT-BSB
T ss_pred ceEEEEEeCCCCHHHHHHHHHHHhhccCCcccccchhhhhhccceeecccC-CcccCccCCcceEEeeeeeec-cCCeeE
Confidence 68999999999975 11 00 01135677777777665332 333578889999999997654 444432
Q ss_pred ccCCCCCCCcccCCCCCCCcccCCcchHhHHhcCCceEEEe
Q 042800 127 RFVEPRTGDQFSPARHEPKWWLGEPLWETVANQGLKAAAYF 167 (450)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (450)
. .... .-.++.+.++++|+.++.+.
T Consensus 80 ~---~~~~-------------~~~ti~e~Ak~~G~~tGvVt 104 (421)
T PF00245_consen 80 D---PDGK-------------PLETILELAKEAGKATGVVT 104 (421)
T ss_dssp E---TTSC-------------B---HHHHHHHTT-EEEEEE
T ss_pred C---CCCC-------------cchhHHHHHHHhCCeeeeee
Confidence 2 1100 12578899999999997764
No 64
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=56.72 E-value=28 Score=30.03 Aligned_cols=139 Identities=17% Similarity=0.201 Sum_probs=73.6
Q ss_pred CceeccccccCCCCCCchhHHhHhcCCCCCCCCCccCccCCCCCCCcccCCCCCCCcccCCcchHhHHhcCCceEEEeec
Q 042800 90 GTEAETGLIPVFPTYTFPNHYSIVTGLYPASHGIINNRFVEPRTGDQFSPARHEPKWWLGEPLWETVANQGLKAAAYFWA 169 (450)
Q Consensus 90 G~~~~~~~~~~~p~~t~ps~~sl~TG~~p~~hGi~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 169 (450)
|...++..++.-|..+.|+..+=.+|....+-|.-+|...++ .+.+.+.+..-+...+-.
T Consensus 8 GsSItqG~~Asrpg~~~~~~~aR~l~~~~iNLGfsG~~~le~-------------------~~a~~ia~~~a~~~~ld~- 67 (178)
T PF14606_consen 8 GSSITQGACASRPGMAYPAILARRLGLDVINLGFSGNGKLEP-------------------EVADLIAEIDADLIVLDC- 67 (178)
T ss_dssp E-TT-TTTT-SSGGGSHHHHHHHHHT-EEEEEE-TCCCS--H-------------------HHHHHHHHS--SEEEEEE-
T ss_pred CChhhcCCCCCCCcccHHHHHHHHcCCCeEeeeecCccccCH-------------------HHHHHHhcCCCCEEEEEe-
Confidence 444455555555788888888888888887777777653332 233555544333322211
Q ss_pred CccccCCCccCCCcccccCCCCCChHHHHHHHHhcccCCCCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 042800 170 GSEVRKGSWDCPKGYCMKYNSSVPFEERVDTVLSYFDLPSDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIG 249 (450)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig 249 (450)
..+ .....+.+++...++.++....+.|-++.-.+..++.... ......+....+.+.
T Consensus 68 --~~N--------------~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~------~~~~~~~~~~~~~~r 125 (178)
T PF14606_consen 68 --GPN--------------MSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFD------NSRGETVEEFREALR 125 (178)
T ss_dssp --SHH--------------CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--------TTS--HHHHHHHHH
T ss_pred --ecC--------------CCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccC------chHHHHHHHHHHHHH
Confidence 000 1335677888888888887667788877776666554211 112235666778888
Q ss_pred HHHHHHHHcCCCCCeEEEEEcCC
Q 042800 250 RLIDGLEKRGVFKDVTVILLGDH 272 (450)
Q Consensus 250 ~ll~~l~~~g~~~nT~vivtsDH 272 (450)
+.++.|++.| ++-+.++.++.
T Consensus 126 ~~v~~l~~~g--~~nl~~l~g~~ 146 (178)
T PF14606_consen 126 EAVEQLRKEG--DKNLYYLDGEE 146 (178)
T ss_dssp HHHHHHHHTT---TTEEEE-HHH
T ss_pred HHHHHHHHcC--CCcEEEeCchh
Confidence 8899998877 44455555443
No 65
>PRK05434 phosphoglyceromutase; Provisional
Probab=54.62 E-value=12 Score=38.15 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=31.5
Q ss_pred ccceeeccCCCCCCCcccCCccchhHHHHHHHhcCCCCCC-CCCCC
Q 042800 395 MRSIFIGHGPRFARGRKVPSFENVQIYNVITSLLNIKGAP-NNGSK 439 (450)
Q Consensus 395 ~~~~f~~~Gp~~~~~~~~~~~~~~Diapti~~llgi~~~~-~~G~~ 439 (450)
.+++|+..||+- .......+.|||||||++||++.|. .+|+.
T Consensus 462 ~~VPlII~~p~~---i~~~~~sL~DIaPTIL~LlGi~~P~~m~G~S 504 (507)
T PRK05434 462 NPVPFILVGGKA---LRLEGGKLADIAPTILDLLGLEQPAEMTGKS 504 (507)
T ss_pred eeeEEEEEECCc---ccCCCccHHHHHHHHHHHhCcCCCCCCCCcc
Confidence 578999999861 1112458999999999999999753 67754
No 66
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=53.36 E-value=13 Score=37.96 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=35.3
Q ss_pred cccceeeccCCCCCCCcccCC----ccchhHHHHHHHhcCCCCC-CCCCCC
Q 042800 394 SMRSIFIGHGPRFARGRKVPS----FENVQIYNVITSLLNIKGA-PNNGSK 439 (450)
Q Consensus 394 ~~~~~f~~~Gp~~~~~~~~~~----~~~~Diapti~~llgi~~~-~~~G~~ 439 (450)
..+++|+..||+++++..+.. -.+.||||||+++|||+.| .++|++
T Consensus 505 ~npVP~Ii~g~~~~~~~~l~~~l~~~gLaDVApTIL~lLGl~~P~emt~sl 555 (558)
T PLN02538 505 LAPVPVAIGGPGLPPGVRFRDDLPTAGLANVAATVMNLHGFEAPADYEPSL 555 (558)
T ss_pred CCCcCEEEEeCCcccCcccccCccCCcHHhHHHHHHHHhCCCCchhcCcch
Confidence 567999999998876543321 1499999999999999876 367765
No 67
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=52.51 E-value=13 Score=31.71 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCC
Q 042800 242 ARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMV 275 (450)
Q Consensus 242 ~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~ 275 (450)
+..|..|.+++..+.+.+ ..+.|+||||...
T Consensus 77 ~tAD~~Ie~~v~~~~~~~---~~v~VVTSD~~iq 107 (166)
T PF05991_consen 77 ETADDYIERLVRELKNRP---RQVTVVTSDREIQ 107 (166)
T ss_pred CCHHHHHHHHHHHhccCC---CeEEEEeCCHHHH
Confidence 467999999999988754 7899999999864
No 68
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=50.57 E-value=15 Score=36.56 Aligned_cols=41 Identities=24% Similarity=0.190 Sum_probs=28.2
Q ss_pred cceeeccCCCCCCCcc-cCCccchhHHHHHHHhcCCCCCC-CCCCC
Q 042800 396 RSIFIGHGPRFARGRK-VPSFENVQIYNVITSLLNIKGAP-NNGSK 439 (450)
Q Consensus 396 ~~~f~~~Gp~~~~~~~-~~~~~~~Diapti~~llgi~~~~-~~G~~ 439 (450)
+++||..|. .|.. .+...+-||||||+.+|||+.|. +.|+.
T Consensus 463 pVp~i~~~~---~~v~~~~~g~LadiAPTiL~llg~~~P~eMtgks 505 (509)
T COG0696 463 PVPVIYTGK---KGVKARKSGKLADIAPTILDLLGLEIPAEMTGKS 505 (509)
T ss_pred CccEEEEcC---CcceeeeccchhhhhHHHHHHcCCCcchhhcccc
Confidence 477777762 2222 12267999999999999999763 56654
No 69
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=50.21 E-value=13 Score=37.64 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=31.5
Q ss_pred cccceeeccCCC-CCCCcccCCccchhHHHHHHHhcCCCCCC-CCCC
Q 042800 394 SMRSIFIGHGPR-FARGRKVPSFENVQIYNVITSLLNIKGAP-NNGS 438 (450)
Q Consensus 394 ~~~~~f~~~Gp~-~~~~~~~~~~~~~Diapti~~llgi~~~~-~~G~ 438 (450)
..+++|+..+|+ ++. ......++|||||||.++|++.|. .+|+
T Consensus 454 ~~~VP~Ii~~p~~i~~--~~~~~sL~DIaPTiLdL~Gi~~P~emdG~ 498 (501)
T TIGR01307 454 TNPVPFVCVGAKNVKL--IREGGVLADIAPTILDLMGLEQPAEMTGK 498 (501)
T ss_pred CeEeeEEEEECCcccc--cCCCceEhHHHHHHHHHhCcCCCCCCCCc
Confidence 357899999984 321 123357999999999999999653 5675
No 70
>COG3885 Uncharacterized conserved protein [Function unknown]
Probab=50.15 E-value=33 Score=30.63 Aligned_cols=34 Identities=15% Similarity=0.459 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCC
Q 042800 238 TKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVG 276 (450)
Q Consensus 238 ~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~ 276 (450)
...+...-..++++++.++ ++..+|+.+|||++.
T Consensus 143 ~~~l~~Fg~~l~~~le~~~-----~ki~lIiSaD~aHth 176 (261)
T COG3885 143 REILVKFGDNLGKALEEYE-----RKISLIISADHAHTH 176 (261)
T ss_pred HHHHHHHHHHHHHHHHHhh-----cceEEEEeccccccc
Confidence 4567777888999999888 489999999999974
No 71
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=45.25 E-value=36 Score=31.89 Aligned_cols=35 Identities=11% Similarity=-0.014 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCC
Q 042800 239 KAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMV 275 (450)
Q Consensus 239 ~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~ 275 (450)
...+.+.+.+.++-+.+++.+ -+|+|||.+||+..
T Consensus 28 ~~~~~~~~a~~~i~~~i~~~~--PDvvVii~~dH~~~ 62 (284)
T PRK13366 28 PYWQPVFKGYEFSKQWEKEEK--PDVIFLVYNDHATA 62 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhC--CCEEEEEcCCcHHh
Confidence 356677777777778887655 68999999999753
No 72
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=42.85 E-value=51 Score=22.33 Aligned_cols=27 Identities=11% Similarity=0.294 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCCChhhHHHHHHHHHHH
Q 042800 4 DHHASTSPSNQTNQSTRTLFIITLLLV 30 (450)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~l~l~ 30 (450)
+...++++..+|+.-++.+++++.++.
T Consensus 3 ~~~~~~~~~~~k~~E~~~flfl~~~l~ 29 (56)
T PF06796_consen 3 SQPKSESDKSTKRSELKAFLFLAVVLF 29 (56)
T ss_pred CCCCCccccchhHHHHHHHHHHHHHHH
Confidence 344455556566666666666654443
No 73
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=42.07 E-value=36 Score=31.82 Aligned_cols=33 Identities=27% Similarity=0.292 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCC
Q 042800 241 VARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMV 275 (450)
Q Consensus 241 ~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~ 275 (450)
...+.+.+.++-+.+++.. -+++|||++||+..
T Consensus 30 ~~~v~~a~~~~~~~v~~~~--PDvvVvis~dH~~~ 62 (278)
T PRK13364 30 WKPFFDGFPPVREWLEKVK--PDVAVVFYNDHGLN 62 (278)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCEEEEECCchHhh
Confidence 5677778888888888754 68999999999986
No 74
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=39.23 E-value=44 Score=31.26 Aligned_cols=34 Identities=21% Similarity=0.069 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCC
Q 042800 241 VARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVG 276 (450)
Q Consensus 241 ~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~ 276 (450)
.+.+.+.+.++-+.+++.+ -+|+|||++||+...
T Consensus 30 ~~~~~~a~~~~~~~i~~~~--PD~iVvi~~dH~~~f 63 (277)
T cd07950 30 WAPIFDGYEPVKQWLAEQK--PDVLFMVYNDHVTSF 63 (277)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHh
Confidence 4566677777777777655 689999999999754
No 75
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=39.18 E-value=1.7e+02 Score=28.44 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=50.0
Q ss_pred CCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCC
Q 042800 210 DEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVG 276 (450)
Q Consensus 210 ~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~ 276 (450)
.=+||++.-+|...+..-..- ..........+|..+.++-++.++.|+.+.-.|||=+|.|-.+
T Consensus 207 ~IDPWlInp~f~~c~~vdF~~---~~G~e~lA~~Vd~~L~kir~KY~eYgI~e~PfViVKADaGTYG 270 (403)
T TIGR02049 207 GIDPWLINPYFEKCDGIDFDD---REGEDALATAVDQVLSKTQKKYEEYGIHTQPYVIVKADAGTYG 270 (403)
T ss_pred CCCcccccHhhhccCCcCCCc---cccHHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCCCC
Confidence 457899988887776543322 2234446678999999999999999999999999999999754
No 76
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....
Probab=38.64 E-value=28 Score=32.76 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=12.0
Q ss_pred CCCeEEEEEcCCCCCCC
Q 042800 261 FKDVTVILLGDHGMVGT 277 (450)
Q Consensus 261 ~~nT~vivtsDHG~~~~ 277 (450)
....+|+|+||+|+++-
T Consensus 74 ~~~~~ivitSDrGLCG~ 90 (290)
T PF00231_consen 74 KKVLLIVITSDRGLCGG 90 (290)
T ss_dssp SCEEEEEE--STSSSTT
T ss_pred ceEEEEEEecCcccccc
Confidence 35678999999999874
No 77
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=37.80 E-value=51 Score=30.81 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCC
Q 042800 240 AVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMV 275 (450)
Q Consensus 240 ~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~ 275 (450)
....+.+.+.++-+.+++.+ -+|+|||.+||...
T Consensus 29 ~~~~~~~a~~~~~~~~~~~~--pD~vVvi~~dH~~~ 62 (277)
T cd07364 29 YWKPLFKGYQPARDWIKKNK--PDVAIIVYNDHASA 62 (277)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCEEEEEcCchHHh
Confidence 44556667777777776654 68999999999864
No 78
>PHA02754 hypothetical protein; Provisional
Probab=36.54 E-value=83 Score=21.26 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=22.2
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHcCCC----------CCeEEEEEcC
Q 042800 236 AITKAVA--RIDSMIGRLIDGLEKRGVF----------KDVTVILLGD 271 (450)
Q Consensus 236 ~~~~~~~--~~D~~ig~ll~~l~~~g~~----------~nT~vivtsD 271 (450)
+..+++. .+-+.+.++-+.|.+.|.+ .|-+||++||
T Consensus 6 Ei~k~i~eK~Fke~MRelkD~LSe~GiYi~RIkai~~SGdkIVVi~aD 53 (67)
T PHA02754 6 EIPKAIMEKDFKEAMRELKDILSEAGIYIDRIKAITTSGDKIVVITAD 53 (67)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhCceEEEEEEEEEecCCEEEEEEcc
Confidence 3444443 3446777788888888876 3445555555
No 79
>PRK05621 F0F1 ATP synthase subunit gamma; Validated
Probab=35.67 E-value=43 Score=31.40 Aligned_cols=13 Identities=23% Similarity=0.652 Sum_probs=11.7
Q ss_pred EEEEEcCCCCCCC
Q 042800 265 TVILLGDHGMVGT 277 (450)
Q Consensus 265 ~vivtsDHG~~~~ 277 (450)
+|||+||+|.++.
T Consensus 77 ~ivitSd~GLCG~ 89 (284)
T PRK05621 77 YIVVTSDRGLCGG 89 (284)
T ss_pred EEEEeCCCcccch
Confidence 7999999999875
No 80
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=34.93 E-value=65 Score=30.93 Aligned_cols=33 Identities=27% Similarity=0.237 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCC
Q 042800 240 AVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGM 274 (450)
Q Consensus 240 ~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~ 274 (450)
....+-+.+.++-+.+++.+ -+|+|||.+||+.
T Consensus 27 ~~~~~~~a~~~l~~~v~~~~--PD~iVV~~sdH~~ 59 (329)
T cd07369 27 VRARTEEATLKLGRTLTAAR--PDVIIAFLDDHFE 59 (329)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCEEEEEcCCchh
Confidence 45566666777777776654 5899999999976
No 81
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=34.88 E-value=1e+02 Score=28.83 Aligned_cols=36 Identities=11% Similarity=-0.090 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCC
Q 042800 239 KAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVG 276 (450)
Q Consensus 239 ~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~ 276 (450)
.....+-+.+.++-+.+++.+ -+|+|||+.||....
T Consensus 26 ~~~~~~~~a~~~~~~~v~~~~--pD~ivvi~~dH~~~f 61 (277)
T cd07368 26 AQREICWHAYAICAERLAALQ--VTSVVVIGDDHYTLF 61 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CCEEEEEcCchHhhh
Confidence 344455577777777777655 589999999999864
No 82
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=34.27 E-value=50 Score=30.85 Aligned_cols=34 Identities=29% Similarity=0.268 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCC
Q 042800 241 VARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVG 276 (450)
Q Consensus 241 ~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~ 276 (450)
...+-+.+.++-+.+++.. -+|+|||++||+...
T Consensus 30 ~~~~~~a~~~~~~~v~~~~--PD~iVvis~dH~~~f 63 (276)
T cd07949 30 WKPFFDGFPPVHDWLEKAK--PDVAVVFYNDHGLNF 63 (276)
T ss_pred HHHHHHHHHHHHHHHHHcC--CCEEEEECCcHHhhh
Confidence 4455666777777777654 689999999997754
No 83
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=33.79 E-value=53 Score=30.72 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCC
Q 042800 241 VARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMV 275 (450)
Q Consensus 241 ~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~ 275 (450)
...+.+.+.++-+.+++.+ -+|+|||.|||+..
T Consensus 30 ~~~~~~a~~~i~~~v~~~~--PDviVvi~sdH~~~ 62 (279)
T PRK13365 30 WKPLFDGYEPVAAWLAEQK--ADVLVFFYNDHCTT 62 (279)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCEEEEEcCchHHH
Confidence 4566677777777777654 68999999999964
No 84
>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit. This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP.
Probab=31.19 E-value=59 Score=30.53 Aligned_cols=14 Identities=21% Similarity=0.617 Sum_probs=12.1
Q ss_pred EEEEEcCCCCCCCC
Q 042800 265 TVILLGDHGMVGTC 278 (450)
Q Consensus 265 ~vivtsDHG~~~~~ 278 (450)
+|||+||+|.++.-
T Consensus 78 ~ivitSDrGLCG~f 91 (287)
T TIGR01146 78 ILVITSDRGLCGGY 91 (287)
T ss_pred EEEEeCCCCccccc
Confidence 79999999998753
No 85
>PF05827 ATP-synt_S1: Vacuolar ATP synthase subunit S1 (ATP6S1); InterPro: IPR024722 This family consists of metazoan vacuolar ATP synthase subunit S1 proteins [] and fungal proteins belonging to the BIG family. In Candida albicans BIG is required for normal beta-1,6-glucan synthesis, hyphal morphogenesis, adhesion and virulence [].
Probab=29.34 E-value=89 Score=29.18 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=40.4
Q ss_pred CCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCC
Q 042800 211 EIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDH 272 (450)
Q Consensus 211 ~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDH 272 (450)
.+|-++.+.+...-... ....+.++.-|..|+++++.|.+.+ +..+|+||+.
T Consensus 126 ~~~~vi~V~l~~l~~~~-------~~R~~~L~~nD~~l~~vl~~l~s~~---~ytvIyts~~ 177 (282)
T PF05827_consen 126 YKPRVIRVDLPPLPSSS-------ESRKEALSDNDEFLRKVLSKLPSPD---PYTVIYTSTP 177 (282)
T ss_pred cCCcEEEEECCCCCCcc-------ccchhhhhhhhHHHHHHHHhcCCCC---cEEEEEEccC
Confidence 37788888887764322 3456789999999999999999753 4789999986
No 86
>PRK11901 hypothetical protein; Reviewed
Probab=29.31 E-value=1.4e+02 Score=28.35 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=7.9
Q ss_pred CCCCCCCCCCCC
Q 042800 2 GSDHHASTSPSN 13 (450)
Q Consensus 2 ~~~~~~~~~~~~ 13 (450)
-|||...+|.+.
T Consensus 14 tSDRrp~Rsr~~ 25 (327)
T PRK11901 14 TSDRRPTRSRKS 25 (327)
T ss_pred cccCCCcccccC
Confidence 378887776643
No 87
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=29.19 E-value=1.1e+02 Score=22.08 Aligned_cols=31 Identities=10% Similarity=0.267 Sum_probs=25.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHc
Q 042800 228 HVVGPDDVAITKAVARIDSMIGRLIDGLEKR 258 (450)
Q Consensus 228 h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~ 258 (450)
|.....++-..+.+..+|..+..++..+++.
T Consensus 7 Hi~~~~skWL~~~l~dmd~kvk~mlklieed 37 (74)
T PF07765_consen 7 HISPKQSKWLQENLSDMDEKVKAMLKLIEED 37 (74)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4444566778889999999999999999863
No 88
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional
Probab=29.12 E-value=62 Score=30.49 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=11.5
Q ss_pred EEEEEcCCCCCCC
Q 042800 265 TVILLGDHGMVGT 277 (450)
Q Consensus 265 ~vivtsDHG~~~~ 277 (450)
+||||||.|.++.
T Consensus 79 ~IvitSDrGLCG~ 91 (291)
T PRK13424 79 IVLITSDRGLCGS 91 (291)
T ss_pred EEEEeCCCccccc
Confidence 6889999999875
No 89
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=27.72 E-value=21 Score=24.31 Aligned_cols=10 Identities=20% Similarity=0.332 Sum_probs=4.4
Q ss_pred CCCCCChhhH
Q 042800 11 PSNQTNQSTR 20 (450)
Q Consensus 11 ~~~~~~~~~~ 20 (450)
.+++||+.++
T Consensus 24 ~~r~RrRrc~ 33 (60)
T PF06072_consen 24 ASRRRRRRCR 33 (60)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 90
>COG4077 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.26 E-value=1.1e+02 Score=24.68 Aligned_cols=34 Identities=15% Similarity=0.383 Sum_probs=26.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCe
Q 042800 231 GPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDV 264 (450)
Q Consensus 231 g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT 264 (450)
.+.+.+-.+.|..+|++|.++.+.+.+..++-+|
T Consensus 69 d~es~Eg~elI~e~De~vr~~vei~te~~i~~d~ 102 (156)
T COG4077 69 DKESFEGVELIKEIDEFVRRIVEILTENPIYPDT 102 (156)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHhhhcCCCccCc
Confidence 3467788889999999999999999876554443
No 91
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=27.25 E-value=81 Score=29.61 Aligned_cols=13 Identities=31% Similarity=0.772 Sum_probs=11.7
Q ss_pred EEEEEcCCCCCCC
Q 042800 265 TVILLGDHGMVGT 277 (450)
Q Consensus 265 ~vivtsDHG~~~~ 277 (450)
+|||+||+|.++-
T Consensus 74 ~IvitSDrGLCG~ 86 (285)
T TIGR03323 74 AIVFGSDQGLVGQ 86 (285)
T ss_pred EEEEECCCcCchH
Confidence 7999999999875
No 92
>PRK13427 F0F1 ATP synthase subunit gamma; Provisional
Probab=26.91 E-value=69 Score=30.15 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=12.0
Q ss_pred EEEEEcCCCCCCCC
Q 042800 265 TVILLGDHGMVGTC 278 (450)
Q Consensus 265 ~vivtsDHG~~~~~ 278 (450)
+||||||+|.++.-
T Consensus 79 ~ivitSDrGLcG~f 92 (289)
T PRK13427 79 LLIITANRGLCGGF 92 (289)
T ss_pred EEEEeCCCCccccc
Confidence 79999999998753
No 93
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=26.20 E-value=1.1e+02 Score=28.42 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCC
Q 042800 240 AVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMV 275 (450)
Q Consensus 240 ~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~ 275 (450)
.++.+-+.+.++-+.+++.. -+++|||++||+..
T Consensus 23 ~~~~~~~al~~~~~~l~~~~--Pd~ivvis~dH~~~ 56 (268)
T cd07367 23 QAARVVQGMAEIGRRVRESR--PDVLVVISSDHLFN 56 (268)
T ss_pred HHHHHHHHHHHHHHHHHHcC--CCEEEEEeCchhhh
Confidence 34455555666666665432 69999999999865
No 94
>PRK14111 F0F1 ATP synthase subunit gamma; Provisional
Probab=25.45 E-value=47 Score=31.28 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=13.1
Q ss_pred Ce-EEEEEcCCCCCCCC
Q 042800 263 DV-TVILLGDHGMVGTC 278 (450)
Q Consensus 263 nT-~vivtsDHG~~~~~ 278 (450)
++ +||||||+|.++.-
T Consensus 78 ~~~~IvitSDrGLCG~f 94 (290)
T PRK14111 78 RVALILVTPDRGLAGSL 94 (290)
T ss_pred ceEEEEEeCCCCccccc
Confidence 34 89999999998753
No 95
>COG4102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.06 E-value=2.3e+02 Score=27.21 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=38.4
Q ss_pred CCCCCcEEEEcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCeEEEEEcCCCCCC
Q 042800 209 SDEIPAFTALYFEDPDSHGHVVGPDDVAITKAVARIDSMIGRLIDGLEKRG-VFKDVTVILLGDHGMVG 276 (450)
Q Consensus 209 ~~~~P~fl~~~~~~~d~~~h~~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g-~~~nT~vivtsDHG~~~ 276 (450)
...+|-..++.+..=|.--...+ .--...+.++..+.-+=..+.+.| .+++|+|+..||-|-+.
T Consensus 264 ~~~gp~vaalsl~gfDTH~nq~~----aq~~La~ql~~~da~l~a~~t~lG~~w~dt~i~t~tEFgRta 328 (418)
T COG4102 264 LGPGPQVAALSLGGFDTHANQND----AQGRLATQLGGLDAALDAFETELGARWKDTVIVTATEFGRTA 328 (418)
T ss_pred cCCCceEEEEeecCccccccccc----hhhHHHHHhcchHHHHHHHHhhccccccceEEEEeeccccce
Confidence 34567777777665553221111 122344455555555555555677 78999999999988764
No 96
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional
Probab=24.60 E-value=70 Score=30.26 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=11.7
Q ss_pred EEEEEcCCCCCCC
Q 042800 265 TVILLGDHGMVGT 277 (450)
Q Consensus 265 ~vivtsDHG~~~~ 277 (450)
+|||+||+|.++-
T Consensus 78 ~IvitSDrGLCG~ 90 (298)
T PRK13422 78 YIVTSTDRGLCGG 90 (298)
T ss_pred EEEEeCCcccccc
Confidence 7999999999875
No 97
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional
Probab=24.31 E-value=1.2e+02 Score=28.47 Aligned_cols=14 Identities=21% Similarity=0.688 Sum_probs=12.0
Q ss_pred EEEEEcCCCCCCCC
Q 042800 265 TVILLGDHGMVGTC 278 (450)
Q Consensus 265 ~vivtsDHG~~~~~ 278 (450)
+||||||+|.++--
T Consensus 79 ~ivitSDrGLCG~f 92 (291)
T PRK13425 79 VILITSDRGLCGAF 92 (291)
T ss_pred EEEEeCCCcccccc
Confidence 78999999998753
No 98
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=24.23 E-value=2.5e+02 Score=23.22 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHcCCCCCeEEEEEcCCCCC
Q 042800 245 DSMIGRLIDGLEKRGVFKDVTVILLGDHGMV 275 (450)
Q Consensus 245 D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~ 275 (450)
...+.+..+.|++.|. +-+|++|||+...
T Consensus 70 ~~~L~~w~~~l~~~GF--khV~~lT~D~~Wk 98 (142)
T PF10673_consen 70 VERLNDWCEELKESGF--KHVFYLTSDSEWK 98 (142)
T ss_pred HHHHHHHHHHHHhcCC--cEEEEEecCcccc
Confidence 3567777888998886 7899999999885
No 99
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional
Probab=24.05 E-value=76 Score=29.84 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=12.2
Q ss_pred EEEEEcCCCCCCCC
Q 042800 265 TVILLGDHGMVGTC 278 (450)
Q Consensus 265 ~vivtsDHG~~~~~ 278 (450)
+|||+||+|.++..
T Consensus 78 ~IvitSDrGLCG~f 91 (288)
T PRK13423 78 LVVVTSDRGLCGGF 91 (288)
T ss_pred EEEEeCCCCCcchh
Confidence 89999999998753
No 100
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=24.03 E-value=99 Score=29.69 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHcCCCCCeEEEEEcCCCCC
Q 042800 245 DSMIGRLIDGLEKRGVFKDVTVILLGDHGMV 275 (450)
Q Consensus 245 D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~ 275 (450)
.+.+.++-+.+++.. -+++|||+.||...
T Consensus 72 ~~a~~~~~~~i~~~~--PDvlVIispDH~~~ 100 (328)
T cd07366 72 QAALDRLADFIRAAR--IDVAVIVGDDQKEL 100 (328)
T ss_pred HHHHHHHHHHHHHhC--CCEEEEEcCccHhh
Confidence 355666666666544 58999999999953
No 101
>PF14556 AF2331-like: AF2331-like; PDB: 2FDO_A.
Probab=21.29 E-value=1.4e+02 Score=21.76 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=12.6
Q ss_pred HHHHHHHHcCCCCCeEEEEEcC
Q 042800 250 RLIDGLEKRGVFKDVTVILLGD 271 (450)
Q Consensus 250 ~ll~~l~~~g~~~nT~vivtsD 271 (450)
.+++.|+ ..+.+++++|+.||
T Consensus 10 sFlkFle-knl~ed~vvvVSSD 30 (93)
T PF14556_consen 10 SFLKFLE-KNLEEDKVVVVSSD 30 (93)
T ss_dssp HHHHHHH-CC--TTEEEEEE--
T ss_pred HHHHHHH-hccCCCeEEEEecc
Confidence 3556665 35668999999998
No 102
>PRK13373 putative dioxygenase; Provisional
Probab=20.95 E-value=1.6e+02 Score=28.26 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCC
Q 042800 240 AVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVG 276 (450)
Q Consensus 240 ~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~ 276 (450)
....+.+.+.++-+.+++.. -+++|||.+||....
T Consensus 27 ~~~~v~~a~~~ir~~i~e~k--PDVvVv~~nDH~~~F 61 (344)
T PRK13373 27 VRRRLLQAADRLGRSLDAAR--PDVIIAFLDDHFENH 61 (344)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCEEEEEccchhhhh
Confidence 34455666666666666543 689999999999854
No 103
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional
Probab=20.17 E-value=1.7e+02 Score=27.53 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=11.6
Q ss_pred EEEEEcCCCCCCC
Q 042800 265 TVILLGDHGMVGT 277 (450)
Q Consensus 265 ~vivtsDHG~~~~ 277 (450)
+||||||.|.++-
T Consensus 78 ~IvitSDrGLcG~ 90 (291)
T PRK13426 78 IVVFSSNTSLCGG 90 (291)
T ss_pred EEEEeCCCcccch
Confidence 7999999999875
No 104
>PF12249 AftA_C: Arabinofuranosyltransferase A C terminal; InterPro: IPR020959 The arabinofuranosyltransferase enzyme AftA is involved in cell wall arabinan biosynthesis in bacteria []. It catalyses the addition of the first key arabinofuranosyl residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol to the galactan domain of the cell wall, thus priming the galactan for further elaboration by the arabinofuranosyltransferases. As this enzyme is important for cell growth and is found in some important pathogens, such as Mycobacterium tuberculosis, it represents a potential target for the devlopment of new antibacterial drugs. This entry represents the C-terminal domain of AftA.; GO: 0016757 transferase activity, transferring glycosyl groups, 0044038 cell wall macromolecule biosynthetic process, 0005886 plasma membrane, 0016021 integral to membrane
Probab=20.13 E-value=1.1e+02 Score=26.10 Aligned_cols=52 Identities=27% Similarity=0.354 Sum_probs=31.1
Q ss_pred EEEcccCCCCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCCC
Q 042800 216 TALYFEDPDSHGHV---VGPDDVAITKAVARIDSMIGRLIDGLEKRGVFKDVTVILLGDHGMVG 276 (450)
Q Consensus 216 l~~~~~~~d~~~h~---~g~~~~~~~~~~~~~D~~ig~ll~~l~~~g~~~nT~vivtsDHG~~~ 276 (450)
+-+.+.++|..|++ ..+++..|+ ..+|+.|.+. .|.--+-.||+|.|.++-.
T Consensus 10 i~~AYtDTDG~G~RaDr~P~~a~~yY---~~id~~I~~~------tG~~~~~tVvLT~d~~Fls 64 (178)
T PF12249_consen 10 IDVAYTDTDGNGERADRRPPDAERYY---PEIDAAIREQ------TGRPPDDTVVLTDDYSFLS 64 (178)
T ss_pred cceeeecCCCCCcccccCCCchHHhH---HHHHHHHHHh------cCCCCCCeEEEeccccceE
Confidence 34456667766554 344555554 4455555443 2444567899999999853
No 105
>PF11807 DUF3328: Domain of unknown function (DUF3328); InterPro: IPR021765 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes.
Probab=20.00 E-value=1.3e+02 Score=26.28 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHcC
Q 042800 240 AVARIDSMIGRLIDGLEKRG 259 (450)
Q Consensus 240 ~~~~~D~~ig~ll~~l~~~g 259 (450)
....+|..+..|.+.+-=.+
T Consensus 159 ~~~H~~HC~d~LRq~imC~a 178 (217)
T PF11807_consen 159 DREHIDHCLDYLRQSIMCHA 178 (217)
T ss_pred ccchhHHHHHHHHHHhhccC
Confidence 34445666666666655444
Done!