BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042802
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/392 (29%), Positives = 176/392 (44%), Gaps = 63/392 (16%)
Query: 1 FFGTIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWXXXXXXXXXXXXXXXXXXX 60
F G IP +++N S+L L L N SG IP+++G+L
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL------------------------ 438
Query: 61 XXXNCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLAL 120
KLR++ L N L+G +P + + +L+TLI+ + G I + N +NL +
Sbjct: 439 -----SKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWI 492
Query: 121 TLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIP 180
+L N+LTG IP GRL+ L L L+ N G+ P EL L + N +G+IP
Sbjct: 493 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Query: 181 SCLSN---------LTSLRSLYLGSNSLK-------DILFF-----------------DF 207
+ + + R +Y+ ++ +K ++L F +
Sbjct: 553 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 612
Query: 208 SSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPEL 267
+S G S N ++ +++S N LSG IP I + L ++L +N G IP+
Sbjct: 613 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 672
Query: 268 FGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFM 327
GDL L +L+LS NK+ G IP +M L L E++LS N L G IP G F +F F+
Sbjct: 673 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 732
Query: 328 GNELLCGLPNLQVQPCKVSKPRTEHKSRKKIL 359
N LCG P + P +S + L
Sbjct: 733 NNPGLCGYPLPRCDPSNADGYAHHQRSHGRRL 764
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 135/297 (45%), Gaps = 20/297 (6%)
Query: 1 FFGTIPSSITNA-SKLTVLELGGNTFSGFIPNTIGNLRNHEWXXXXXXXXXXXXXXXXXX 59
F G IP ++ A LT L+L GN F G +P G+
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS----LLESLALSSNNFSGELPM 333
Query: 60 XXXXNCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAI-GNLSNLL 118
+ L+ ++L N G LP S+ NLS SL TL +++ + G I + N N L
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 119 A-LTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSG 177
L L+ N TG IP T +L L L+FN L G+ P L L++L + + N G
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 178 SIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLS 237
IP L + +L +L L DF N L G + + N L I+LS N L+
Sbjct: 454 EIPQELMYVKTLETLIL-----------DF--NDLTGEIPSGLSNCTNLNWISLSNNRLT 500
Query: 238 GDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEK 294
G+IP I L++L + L+ N G IP GD SL L+L+ N +G IP +M K
Sbjct: 501 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 27/256 (10%)
Query: 65 CKKLRNINLIGNPLDGFLPSSI-GNLSM-SLKTLIIANCSIIG-NIRRAI--GNLSNLLA 119
C L+ +N+ N LD P + G L + SL+ L ++ SI G N+ + L
Sbjct: 122 CSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 179
Query: 120 LTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSI 179
L + GNK++G + ++ R L+ LD++ N P L + L I GNK SG
Sbjct: 180 LAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF 236
Query: 180 PSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGD 239
+S T L+ + SSN VGP+ LK L ++L++N +G+
Sbjct: 237 SRAISTCTELK-------------LLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGE 281
Query: 240 IPATIVGLKD-LQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIP-TSMEKLVY 297
IP + G D L +DL+ N G +P FG + LE L LS N SG +P ++ K+
Sbjct: 282 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 341
Query: 298 LRELNLSFNKLEGEIP 313
L+ L+LSFN+ GE+P
Sbjct: 342 LKVLDLSFNEFSGELP 357
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 119/298 (39%), Gaps = 86/298 (28%)
Query: 65 CKKLRNINLIGNPLDG-----------FLPSSIGNLSM---------SLKTLIIANCSII 104
C +L+++ + GN + G FL S N S +L+ L I+ +
Sbjct: 174 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS 233
Query: 105 GNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLAR 164
G+ RAI + L L + N+ GPIP L+ LQ L LA NK G PD L
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL----- 286
Query: 165 LAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLK 224
S + + D S N G + G+
Sbjct: 287 -------------------------------SGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 225 VLVRINLSKNNLSGDIPA-TIVGLKDLQFMDLAYNRSEGPIPELFGDLT-SLEVLNLSKN 282
+L + LS NN SG++P T++ ++ L+ +DL++N G +PE +L+ SL L+LS N
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 283 KISGP--------------------------IPTSMEKLVYLRELNLSFNKLEGEIPS 314
SGP IP ++ L L+LSFN L G IPS
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 29/233 (12%)
Query: 90 SMSLKTLIIANCSIIGNIRR--AIGNLSNLLALTLEGNKLTGPIPITFG-RLQKLQGLDL 146
S SL +L ++ S+ G + ++G+ S L L + N L P ++ G +L L+ LDL
Sbjct: 96 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 155
Query: 147 AFNKL-----VGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD 201
+ N + VG + C L I GNK SG + +S +L L + SN+
Sbjct: 156 SANSISGANVVGWVLSDGC--GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFST 211
Query: 202 ILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSE 261
+ F +G+ L +++S N LSGD I +L+ ++++ N+
Sbjct: 212 GIPF--------------LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 262 GPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLV-YLRELNLSFNKLEGEIP 313
GPIP L L SL+ L+L++NK +G IP + L L+LS N G +P
Sbjct: 258 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 131 bits (329), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 172/375 (45%), Gaps = 63/375 (16%)
Query: 1 FFGTIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWXXXXXXXXXXXXXXXXXXX 60
F G IP +++N S+L L L N SG IP+++G+L
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL------------------------ 441
Query: 61 XXXNCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLAL 120
KLR++ L N L+G +P + + +L+TLI+ + G I + N +NL +
Sbjct: 442 -----SKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 121 TLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIP 180
+L N+LTG IP GRL+ L L L+ N G+ P EL L + N +G+IP
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 181 SCLSN---------LTSLRSLYLGSNSLK-------DILFF-----------------DF 207
+ + + R +Y+ ++ +K ++L F +
Sbjct: 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
Query: 208 SSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPEL 267
+S G S N ++ +++S N LSG IP I + L ++L +N G IP+
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675
Query: 268 FGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFM 327
GDL L +L+LS NK+ G IP +M L L E++LS N L G IP G F +F F+
Sbjct: 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735
Query: 328 GNELLCGLPNLQVQP 342
N LCG P + P
Sbjct: 736 NNPGLCGYPLPRCDP 750
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 135/297 (45%), Gaps = 20/297 (6%)
Query: 1 FFGTIPSSITNA-SKLTVLELGGNTFSGFIPNTIGNLRNHEWXXXXXXXXXXXXXXXXXX 59
F G IP ++ A LT L+L GN F G +P G+
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS----LLESLALSSNNFSGELPM 336
Query: 60 XXXXNCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAI-GNLSNLL 118
+ L+ ++L N G LP S+ NLS SL TL +++ + G I + N N L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 119 A-LTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSG 177
L L+ N TG IP T +L L L+FN L G+ P L L++L + + N G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 178 SIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLS 237
IP L + +L +L L DF N L G + + N L I+LS N L+
Sbjct: 457 EIPQELMYVKTLETLIL-----------DF--NDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Query: 238 GDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEK 294
G+IP I L++L + L+ N G IP GD SL L+L+ N +G IP +M K
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 27/256 (10%)
Query: 65 CKKLRNINLIGNPLDGFLPSSI-GNLSM-SLKTLIIANCSIIG-NIRRAI--GNLSNLLA 119
C L+ +N+ N LD P + G L + SL+ L ++ SI G N+ + L
Sbjct: 125 CSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182
Query: 120 LTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSI 179
L + GNK++G + ++ R L+ LD++ N P L + L I GNK SG
Sbjct: 183 LAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF 239
Query: 180 PSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGD 239
+S T L+ + SSN VGP+ LK L ++L++N +G+
Sbjct: 240 SRAISTCTELK-------------LLNISSNQFVGPIP--PLPLKSLQYLSLAENKFTGE 284
Query: 240 IPATIVGLKD-LQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIP-TSMEKLVY 297
IP + G D L +DL+ N G +P FG + LE L LS N SG +P ++ K+
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 298 LRELNLSFNKLEGEIP 313
L+ L+LSFN+ GE+P
Sbjct: 345 LKVLDLSFNEFSGELP 360
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 119/298 (39%), Gaps = 86/298 (28%)
Query: 65 CKKLRNINLIGNPLDG-----------FLPSSIGNLSM---------SLKTLIIANCSII 104
C +L+++ + GN + G FL S N S +L+ L I+ +
Sbjct: 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS 236
Query: 105 GNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLAR 164
G+ RAI + L L + N+ GPIP L+ LQ L LA NK G PD L
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL----- 289
Query: 165 LAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLK 224
S + + D S N G + G+
Sbjct: 290 -------------------------------SGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 225 VLVRINLSKNNLSGDIPA-TIVGLKDLQFMDLAYNRSEGPIPELFGDLT-SLEVLNLSKN 282
+L + LS NN SG++P T++ ++ L+ +DL++N G +PE +L+ SL L+LS N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 283 KISGP--------------------------IPTSMEKLVYLRELNLSFNKLEGEIPS 314
SGP IP ++ L L+LSFN L G IPS
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 29/233 (12%)
Query: 90 SMSLKTLIIANCSIIGNIRR--AIGNLSNLLALTLEGNKLTGPIPITFG-RLQKLQGLDL 146
S SL +L ++ S+ G + ++G+ S L L + N L P ++ G +L L+ LDL
Sbjct: 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158
Query: 147 AFNKL-----VGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD 201
+ N + VG + C L I GNK SG + +S +L L + SN+
Sbjct: 159 SANSISGANVVGWVLSDGC--GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFST 214
Query: 202 ILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSE 261
+ F +G+ L +++S N LSGD I +L+ ++++ N+
Sbjct: 215 GIPF--------------LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 262 GPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLV-YLRELNLSFNKLEGEIP 313
GPIP L L SL+ L+L++NK +G IP + L L+LS N G +P
Sbjct: 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 125/267 (46%), Gaps = 38/267 (14%)
Query: 82 LPSSIGNLSMSLKTLIIANCS-IIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQK 140
+PSS+ NL L L I + ++G I AI L+ L L + ++G IP +++
Sbjct: 68 IPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 141 LQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSL-RSLYLGSNSL 199
L LD ++N L G+ P + L L GN+ SG+IP + + L S+ + N L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 200 K----------DILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKD 249
++ F D S N L G S+ G+ K +I+L+KN+L+ D+ VGL
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSK 244
Query: 250 LQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLE 309
+L L+L N+I G +P + +L +L LN+SFN L
Sbjct: 245 -----------------------NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 310 GEIPSGGIFTSFIAESFMGNELLCGLP 336
GEIP GG F ++ N+ LCG P
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKCLCGSP 308
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 31/179 (17%)
Query: 3 GTIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWXXXXXXXXXXXXXXXXXXXXX 62
GT+P SI++ L + GN SG IP++ G+
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS------------------------- 173
Query: 63 XNCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTL 122
K ++ + N L G +P + NL+++ L + + G+ G+ N + L
Sbjct: 174 ---KLFTSMTISRNRLTGKIPPTFANLNLAFVDL--SRNMLEGDASVLFGSDKNTQKIHL 228
Query: 123 EGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPS 181
N L + G + L GLDL N++ G+ P L L L + N G IP
Sbjct: 229 AKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 213 VGPLSLD--IGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGD 270
+G +S D G L LV++ L +N L+G P G +Q + L N+ + ++F
Sbjct: 41 LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLG 100
Query: 271 LTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGNE 330
L L+ LNL N+IS +P S E L L LNL+ N +S G
Sbjct: 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGA 160
Query: 331 LLCGLP 336
CG P
Sbjct: 161 ARCGAP 166
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%)
Query: 111 IGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVI 170
G L +L+ L L+ N+LTG P F +Q L L NK+ L +L +
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 171 LGNKPSGSIPSCLSNLTSLRSLYLGSN 197
N+ S +P +L SL SL L SN
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 162 LARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIG 221
L L + + N+ +G P+ + ++ L LG N +K+I S+ +G
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI-----SNKMFLG------- 100
Query: 222 NLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYN 258
L L +NL N +S +P + L L ++LA N
Sbjct: 101 -LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 91/211 (43%), Gaps = 26/211 (12%)
Query: 116 NLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKL----VGSFPDELCHLARLAEFVIL 171
N L L+ N + TF L+ L+ L L+ N + VG+F L L +
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNG----LPSLNTLELF 91
Query: 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRI-- 229
N+ + L+ LR L+L +N ++ I + F N + LD+G LK L I
Sbjct: 92 DNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLRRLDLGELKRLEYISE 149
Query: 230 ------------NLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVL 277
NL NL DIP + L L+ ++L+ NR + P F LTSL L
Sbjct: 150 AAFEGLVNLRYLNLGMCNLK-DIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKL 207
Query: 278 NLSKNKISGPIPTSMEKLVYLRELNLSFNKL 308
L +++ + + L L ELNLS N L
Sbjct: 208 WLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 91/211 (43%), Gaps = 26/211 (12%)
Query: 116 NLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKL----VGSFPDELCHLARLAEFVIL 171
N L L+ N + TF L+ L+ L L+ N + VG+F L L +
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNG----LPSLNTLELF 91
Query: 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRI-- 229
N+ + L+ LR L+L +N ++ I + F N + LD+G LK L I
Sbjct: 92 DNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLRRLDLGELKRLEYISE 149
Query: 230 ------------NLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVL 277
NL NL DIP + L L+ ++L+ NR + P F LTSL L
Sbjct: 150 AAFEGLVNLRYLNLGMCNLK-DIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKL 207
Query: 278 NLSKNKISGPIPTSMEKLVYLRELNLSFNKL 308
L +++ + + L L ELNLS N L
Sbjct: 208 WLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 27/215 (12%)
Query: 114 LSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGN 173
L+NL + N+LT P+ L KL + + N++ P L +L L + N
Sbjct: 62 LNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 174 KPSGSIPSCLSNLTSLRSLYLGSNSLKDI---------LFFDFSSNFLVG--PLSLDIGN 222
+ + P L NLT+L L L SN++ DI +FSSN + PL N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPL----AN 171
Query: 223 LKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKN 282
L L R+++S N +S DI + + L +L+ + N+ P G LT+L+ L+L+ N
Sbjct: 172 LTTLERLDISSNKVS-DI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 227
Query: 283 KISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGI 317
++ I T + L L +L+L+ N++ P G+
Sbjct: 228 QLKD-IGT-LASLTNLTDLDLANNQISNLAPLSGL 260
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 113/266 (42%), Gaps = 50/266 (18%)
Query: 68 LRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKL 127
L IN N L P + NL+ + I+ N + I +I + NL+NL LTL N++
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVD--ILMNNNQIADIT-PLANLTNLTGLTLFNNQI 119
Query: 128 TGPIPI----TFGRLQ----------------KLQGLDLAFNKLVGSFPDELCHLARLAE 167
T P+ RL+ LQ L+ + N++ P L +L L
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLER 177
Query: 168 FVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLV 227
I NK S S L+ LT+L SL +N + DI PL G L L
Sbjct: 178 LDISSNKVSD--ISVLAKLTNLESLIATNNQISDI-----------TPL----GILTNLD 220
Query: 228 RINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGP 287
++L+ N L DI T+ L +L +DLA N+ P LT L L L N+IS
Sbjct: 221 ELSLNGNQLK-DI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 276
Query: 288 IPTSMEKLVYLRELNLSFNKLEGEIP 313
P + L L L L+ N+LE P
Sbjct: 277 SP--LAGLTALTNLELNENQLEDISP 300
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 104 IGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLA 163
I NI G L+ L L L N+L PI+ L+ L L L FN + P + L
Sbjct: 273 ISNISPLAG-LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLT 327
Query: 164 RLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
+L NK S S L+NLT++ L G N + D+
Sbjct: 328 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL 364
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 115/254 (45%), Gaps = 26/254 (10%)
Query: 68 LRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKL 127
L IN N L P + NL+ + I+ N + I +I + NL+NL LTL N++
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVD--ILMNNNQIADIT-PLANLTNLTGLTLFNNQI 119
Query: 128 TGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLT 187
T P+ L L L+L+ N + S L L L + N+ + P L+NLT
Sbjct: 120 TDIDPL--KNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQVTDLKP--LANLT 173
Query: 188 SLRSLYLGSNSLKDILFFD--------FSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGD 239
+L L + SN + DI ++N + ++ +G L L ++L+ N L D
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLK-D 231
Query: 240 IPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLR 299
I T+ L +L +DLA N+ P LT L L L N+IS P + L L
Sbjct: 232 I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT 286
Query: 300 ELNLSFNKLEGEIP 313
L L+ N+LE P
Sbjct: 287 NLELNENQLEDISP 300
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 27/215 (12%)
Query: 114 LSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGN 173
L+NL + N+LT P+ L KL + + N++ P L +L L + N
Sbjct: 62 LNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 174 KPSGSIPSCLSNLTSLRSLYLGSNSLKDI---------LFFDFSSNFLVG--PLSLDIGN 222
+ + P L NLT+L L L SN++ DI FSSN + PL N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPL----AN 171
Query: 223 LKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKN 282
L L R+++S N +S DI + + L +L+ + N+ P G LT+L+ L+L+ N
Sbjct: 172 LTTLERLDISSNKVS-DI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 227
Query: 283 KISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGI 317
++ I T + L L +L+L+ N++ P G+
Sbjct: 228 QLKD-IGT-LASLTNLTDLDLANNQISNLAPLSGL 260
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 104 IGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLA 163
I NI G L+ L L L N+L PI+ L+ L L L FN + P + L
Sbjct: 273 ISNISPLAG-LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLT 327
Query: 164 RLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
+L NK S S L+NLT++ L G N + D+
Sbjct: 328 KLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDL 364
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 115/254 (45%), Gaps = 26/254 (10%)
Query: 68 LRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKL 127
L IN N L P + NL+ + I+ N + I +I + NL+NL LTL N++
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVD--ILMNNNQIADIT-PLANLTNLTGLTLFNNQI 119
Query: 128 TGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLT 187
T P+ L L L+L+ N + S L L L + N+ + P L+NLT
Sbjct: 120 TDIDPL--KNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQVTDLKP--LANLT 173
Query: 188 SLRSLYLGSNSLKDILFFD--------FSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGD 239
+L L + SN + DI ++N + ++ +G L L ++L+ N L D
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLK-D 231
Query: 240 IPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLR 299
I T+ L +L +DLA N+ P LT L L L N+IS P + L L
Sbjct: 232 I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT 286
Query: 300 ELNLSFNKLEGEIP 313
L L+ N+LE P
Sbjct: 287 NLELNENQLEDISP 300
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 27/215 (12%)
Query: 114 LSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGN 173
L+NL + N+LT P+ L KL + + N++ P L +L L + N
Sbjct: 62 LNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 174 KPSGSIPSCLSNLTSLRSLYLGSNSLKDI---------LFFDFSSNFLVG--PLSLDIGN 222
+ + P L NLT+L L L SN++ DI FSSN + PL N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPL----AN 171
Query: 223 LKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKN 282
L L R+++S N +S DI + + L +L+ + N+ P G LT+L+ L+L+ N
Sbjct: 172 LTTLERLDISSNKVS-DI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 227
Query: 283 KISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGI 317
++ I T + L L +L+L+ N++ P G+
Sbjct: 228 QLKD-IGT-LASLTNLTDLDLANNQISNLAPLSGL 260
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 104 IGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLA 163
I NI G L+ L L L N+L PI+ L+ L L L FN + P + L
Sbjct: 273 ISNISPLAG-LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLT 327
Query: 164 RLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
+L NK S S L+NLT++ L G N + D+
Sbjct: 328 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL 364
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 107/254 (42%), Gaps = 14/254 (5%)
Query: 68 LRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAI-GNLSN--LLALTLEG 124
LR ++L NPL F P + L L++ N + ++ + LSN + L+L
Sbjct: 173 LRKLDLSSNPLKEFSPGCFQTIG-KLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLAN 231
Query: 125 NKLTGPIPITFGRLQ--KLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSC 182
N+L TF L+ L LDL++N L +L L + N P
Sbjct: 232 NQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRS 291
Query: 183 LSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPA 242
L++LR L L K + +S+ + S LK L +N+ NN+
Sbjct: 292 FYGLSNLRYLSLKRAFTKQSV--SLASHPNIDDFSFQW--LKYLEYLNMDDNNIPSTKSN 347
Query: 243 TIVGLKDLQFMDLA--YNRSEGPIPELFGDLTS--LEVLNLSKNKISGPIPTSMEKLVYL 298
T GL L+++ L+ + + E F L L LNL+KN IS + L L
Sbjct: 348 TFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQL 407
Query: 299 RELNLSFNKLEGEI 312
R L+L N++E ++
Sbjct: 408 RILDLGLNEIEQKL 421
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 75/180 (41%), Gaps = 37/180 (20%)
Query: 199 LKDILFFDFSSNFLV---------GPLSLDIGNLKVLVRINLSKNNLSGDIPATIV-GLK 248
L+++ DF N L GP++ G L L +NL N L +IP + L
Sbjct: 503 LENLEILDFQHNNLARLWKRANPGGPVNFLKG-LSHLHILNLESNGL-DEIPVGVFKNLF 560
Query: 249 DLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVY------LRELN 302
+L+ ++L N P +F D TSL LNL KN I TS+EK V+ L L+
Sbjct: 561 ELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLI-----TSVEKDVFGPPFQNLNSLD 615
Query: 303 LSFNKLEGEIPSGGIFTSFIAESF-----MGNELLCGLPN---------LQVQPCKVSKP 348
+ FN + S F ++I ++ + LC P+ CK S P
Sbjct: 616 MRFNPFDCTCESISWFVNWINQTHTNISELSTHYLCNTPHHYYGFPLKLFDTSSCKDSAP 675
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 15/142 (10%)
Query: 98 IANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPD 157
+A+CS + SN+ L L N+L P F R +L LD FN + P
Sbjct: 8 VADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP- 66
Query: 158 ELCHLARLAEFVILGNKPSGSI-PSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPL 216
ELC + L + + L + I T+L L L SNS+ I SN
Sbjct: 67 ELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKI-----KSN------ 115
Query: 217 SLDIGNLKVLVRINLSKNNLSG 238
N K L++++LS N LS
Sbjct: 116 --PFKNQKNLIKLDLSHNGLSS 135
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 15/114 (13%)
Query: 226 LVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNL----SK 281
L +++LS NNL + L L+++ L YN + P F L++L L+L +K
Sbjct: 250 LTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTK 309
Query: 282 NKIS-GPIPT----SMEKLVYLRELNLSFNKLEGEIPS--GGIFTSFIAESFMG 328
+S P S + L YL LN+ + IPS FT ++ ++
Sbjct: 310 QSVSLASHPNIDDFSFQWLKYLEYLNMD----DNNIPSTKSNTFTGLVSLKYLS 359
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%)
Query: 229 INLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPI 288
+NL+ N L P L +D +N PEL L L+VLNL N++S
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQIS 89
Query: 289 PTSMEKLVYLRELNLSFNKLE 309
+ L EL+L N +
Sbjct: 90 DQTFVFCTNLTELDLMSNSIH 110
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 105/225 (46%), Gaps = 23/225 (10%)
Query: 97 IIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP 156
I+ N + I +I + NL+NL LTL N++T P+ L L L+L+ N + S
Sbjct: 94 ILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTI--SDI 148
Query: 157 DELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFD--------FS 208
L L L + GN+ + P L+NLT+L L + SN + DI +
Sbjct: 149 SALSGLTSLQQLS-FGNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIA 205
Query: 209 SNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELF 268
+N + ++ +G L L ++L+ N L DI T+ L +L +DLA N+ P
Sbjct: 206 TNNQISDIT-PLGILTNLDELSLNGNQLK-DI-GTLASLTNLTDLDLANNQISNLAP--L 260
Query: 269 GDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIP 313
LT L L L N+IS P + L L L L+ N+LE P
Sbjct: 261 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 303
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 32/217 (14%)
Query: 114 LSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGN 173
L+NL + N+LT P+ L KL + + N++ P L +L L + N
Sbjct: 66 LNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 174 KPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLD-------------I 220
+ + P L NLT+L L L SN++ DI + L G SL +
Sbjct: 122 QITDIDP--LKNLTNLNRLELSSNTISDI-------SALSGLTSLQQLSFGNQVTDLKPL 172
Query: 221 GNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLS 280
NL L R+++S N +S DI + + L +L+ + N+ P G LT+L+ L+L+
Sbjct: 173 ANLTTLERLDISSNKVS-DI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 228
Query: 281 KNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGI 317
N++ I T + L L +L+L+ N++ P G+
Sbjct: 229 GNQLKD-IGT-LASLTNLTDLDLANNQISNLAPLSGL 263
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 104 IGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLA 163
I NI G L+ L L L N+L PI+ L+ L L L FN + P + L
Sbjct: 276 ISNISPLAG-LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLT 330
Query: 164 RLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
+L NK S S L+NLT++ L G N + D+
Sbjct: 331 KLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDL 367
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 105/225 (46%), Gaps = 23/225 (10%)
Query: 97 IIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP 156
I+ N + I +I + NL+NL LTL N++T P+ L L L+L+ N + S
Sbjct: 95 ILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTI--SDI 149
Query: 157 DELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFD--------FS 208
L L L + GN+ + P L+NLT+L L + SN + DI +
Sbjct: 150 SALSGLTSLQQLS-FGNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIA 206
Query: 209 SNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELF 268
+N + ++ +G L L ++L+ N L DI T+ L +L +DLA N+ P
Sbjct: 207 TNNQISDIT-PLGILTNLDELSLNGNQLK-DI-GTLASLTNLTDLDLANNQISNLAP--L 261
Query: 269 GDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIP 313
LT L L L N+IS P + L L L L+ N+LE P
Sbjct: 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 32/217 (14%)
Query: 114 LSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGN 173
L+NL + N+LT P+ L KL + + N++ P L +L L + N
Sbjct: 67 LNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 174 KPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLD-------------I 220
+ + P L NLT+L L L SN++ DI + L G SL +
Sbjct: 123 QITDIDP--LKNLTNLNRLELSSNTISDI-------SALSGLTSLQQLSFGNQVTDLKPL 173
Query: 221 GNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLS 280
NL L R+++S N +S DI + + L +L+ + N+ P G LT+L+ L+L+
Sbjct: 174 ANLTTLERLDISSNKVS-DI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 229
Query: 281 KNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGI 317
N++ I T + L L +L+L+ N++ P G+
Sbjct: 230 GNQLKD-IGT-LASLTNLTDLDLANNQISNLAPLSGL 264
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 104 IGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLA 163
I NI G L+ L L L N+L PI+ L+ L L L FN + P + L
Sbjct: 277 ISNISPLAG-LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLT 331
Query: 164 RLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
+L NK S S L+NLT++ L G N + D+
Sbjct: 332 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL 368
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 142 QGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCL-SNLTSLRSLYLGSNSLK 200
+ LDL NKL S P + H + L + ++P+ + L +L +L++ N L+
Sbjct: 40 KKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 201 DILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRS 260
+ F + L LD LK L P L L ++ L YN
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLP-------------PRVFDSLTKLTYLSLGYNEL 145
Query: 261 EGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGG 316
+ +F LTSL+ L L N++ + +KL L+ L L N+L+ +P G
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGA 200
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 76/195 (38%), Gaps = 27/195 (13%)
Query: 109 RAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKL----VGSFPDELCHLAR 164
+A L+ L L L NKL F L+ L+ L + NKL +G F L
Sbjct: 55 KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD----QLVN 110
Query: 165 LAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLK 224
LAE + N+ P +LT L L LG N L+ + F L
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK-------------LT 157
Query: 225 VLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPE-LFGDLTSLEVLNLSKNK 283
L + L N L L +L+ + L N+ + +PE F L L++L L +N
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQEN- 215
Query: 284 ISGPIPTSMEKLVYL 298
P + ++Y+
Sbjct: 216 ---PWDCTCNGIIYM 227
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 116/254 (45%), Gaps = 27/254 (10%)
Query: 68 LRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKL 127
L IN N L P + NL+ + I+ N + I +I + NL+NL LTL N++
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVD--ILMNNNQIADIT-PLANLTNLTGLTLFNNQI 119
Query: 128 TGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLT 187
T P+ L L L+L+ N + S L L L + GN+ + P L+NLT
Sbjct: 120 TDIDPL--KNLTNLNRLELSSNTI--SDISALSGLTSLQQLN-FGNQVTDLKP--LANLT 172
Query: 188 SLRSLYLGSNSLKDILFFD--------FSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGD 239
+L L + SN + DI ++N + ++ +G L L ++L+ N L D
Sbjct: 173 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLK-D 230
Query: 240 IPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLR 299
I T+ L +L +DLA N+ P LT L L L N+IS P + L L
Sbjct: 231 I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT 285
Query: 300 ELNLSFNKLEGEIP 313
L L+ N+LE P
Sbjct: 286 NLELNENQLEDISP 299
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 32/217 (14%)
Query: 114 LSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGN 173
L+NL + N+LT P+ L KL + + N++ P L +L L + N
Sbjct: 62 LNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 174 KPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLD-------------I 220
+ + P L NLT+L L L SN++ DI + L G SL +
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI-------SALSGLTSLQQLNFGNQVTDLKPL 168
Query: 221 GNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLS 280
NL L R+++S N +S DI + + L +L+ + N+ P G LT+L+ L+L+
Sbjct: 169 ANLTTLERLDISSNKVS-DI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 224
Query: 281 KNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGI 317
N++ I T + L L +L+L+ N++ P G+
Sbjct: 225 GNQLKD-IGT-LASLTNLTDLDLANNQISNLAPLSGL 259
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 104 IGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLA 163
I NI G L+ L L L N+L PI+ L+ L L L FN + P + L
Sbjct: 272 ISNISPLAG-LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLT 326
Query: 164 RLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
+L NK S S L+NLT++ L G N + D+
Sbjct: 327 KLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDL 363
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 116/254 (45%), Gaps = 27/254 (10%)
Query: 68 LRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKL 127
L IN N L P + NL+ + I+ N + I +I + NL+NL LTL N++
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVD--ILMNNNQIADIT-PLANLTNLTGLTLFNNQI 119
Query: 128 TGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLT 187
T P+ L L L+L+ N + S L L L + GN+ + P L+NLT
Sbjct: 120 TDIDPL--KNLTNLNRLELSSNTI--SDISALSGLTSLQQLN-FGNQVTDLKP--LANLT 172
Query: 188 SLRSLYLGSNSLKDILFFD--------FSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGD 239
+L L + SN + DI ++N + ++ +G L L ++L+ N L D
Sbjct: 173 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLK-D 230
Query: 240 IPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLR 299
I T+ L +L +DLA N+ P LT L L L N+IS P + L L
Sbjct: 231 I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT 285
Query: 300 ELNLSFNKLEGEIP 313
L L+ N+LE P
Sbjct: 286 NLELNENQLEDISP 299
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 32/217 (14%)
Query: 114 LSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGN 173
L+NL + N+LT P+ L KL + + N++ P L +L L + N
Sbjct: 62 LNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 174 KPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLD-------------I 220
+ + P L NLT+L L L SN++ DI + L G SL +
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI-------SALSGLTSLQQLNFGNQVTDLKPL 168
Query: 221 GNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLS 280
NL L R+++S N +S DI + + L +L+ + N+ P G LT+L+ L+L+
Sbjct: 169 ANLTTLERLDISSNKVS-DI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 224
Query: 281 KNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGI 317
N++ I T + L L +L+L+ N++ P G+
Sbjct: 225 GNQLKD-IGT-LASLTNLTDLDLANNQISNLAPLSGL 259
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 104 IGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLA 163
I NI G L+ L L L N+L PI+ L+ L L L FN + P + L
Sbjct: 272 ISNISPLAG-LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLT 326
Query: 164 RLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
+L NK S S L+NLT++ L G N + D+
Sbjct: 327 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL 363
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 82/206 (39%), Gaps = 16/206 (7%)
Query: 119 ALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGS 178
+L L+ ++ + TF +LQ LDL L G P + L L + V+ N
Sbjct: 255 SLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQL 313
Query: 179 IPSCLSNLTSLRSLYLGSN------------SLKDILFFDFSSNFLVGP--LSLDIGNLK 224
+N SL LY+ N L ++ D S N + SL + NL
Sbjct: 314 CQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLS 373
Query: 225 VLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPEL-FGDLTSLEVLNLSKNK 283
L +NLS N G L+ +DLA+ R P+ F +L L+VLNL+
Sbjct: 374 HLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCF 433
Query: 284 ISGPIPTSMEKLVYLRELNLSFNKLE 309
+ + L LR LNL N +
Sbjct: 434 LDTSNQHLLAGLPVLRHLNLKGNHFQ 459
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 24/217 (11%)
Query: 111 IGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPD---ELCHLARLAE 167
+ NLS+L L L N+ G F +L+ LDLAF +L + P + H ++
Sbjct: 369 LKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLN 428
Query: 168 FVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD-------ILFFDFSSNFLV----GPL 216
S L+ L LR L L N +D +L S L+ G L
Sbjct: 429 LTYCFLDTSNQ--HLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLL 486
Query: 217 SLD---IGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTS 273
S+D +L + ++LS N+L+ D ++ LK + +++LA N P L L+
Sbjct: 487 SIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQ 545
Query: 274 LEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEG 310
+NLS N P+ + + +L + +KLEG
Sbjct: 546 QSTINLSHN----PLDCTCSNIHFLTWYKENLHKLEG 578
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 96/246 (39%), Gaps = 65/246 (26%)
Query: 134 TFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGN------KPSGSIPSCL---- 183
TF RL L LDL ++ D +L+ V+ GN + S + P L
Sbjct: 49 TFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLF 108
Query: 184 --------------SNLTSLRSLYLGSNSLKDILF-----------FDFSSNFLVGPLSL 218
NL +L SLYLGSN + I F DF +N +
Sbjct: 109 LIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISRE 168
Query: 219 DIGNLKVLVR--INLSKNNLS----GDIPATIV------GLKDLQ--FMDLAYNRSEGPI 264
D+ +L+ + +N + NN+ G +TI G +L F L + ++
Sbjct: 169 DMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLW 228
Query: 265 PELFGDLT---------------SLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLE 309
F D+ S+E LNL +++ S T+ + L+EL+L+ L+
Sbjct: 229 LGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLK 288
Query: 310 GEIPSG 315
G +PSG
Sbjct: 289 G-LPSG 293
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 111/262 (42%), Gaps = 41/262 (15%)
Query: 69 RNINLIGNPLDGFLPSSIGNLSM----SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEG 124
+N++L NPL +G+ S L+ L ++ C I A +LS+L L L G
Sbjct: 33 KNLDLSWNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 87
Query: 125 NKLTGPIPITFGRLQKLQGLDLAFNKLVG--SFPDELCHLARLAEFVILGN-KPSGSIPS 181
N + F L LQ L L +FP + HL L E + N S +P
Sbjct: 88 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPE 145
Query: 182 CLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRI-NLSKNNLSGDI 240
SNLT+L L L SN ++ I D L+VL ++ L+ +
Sbjct: 146 YFSNLTNLEHLDLSSNKIQSIYCTD----------------LRVLHQMPLLNLSLDLSLN 189
Query: 241 PATIV---GLKDLQFMDLAYNRSE-GPIPE-LFGDLTSLEVLNLSKNKISGPIPTSMEKL 295
P + K+++ +LA + ++ +P+ +F LTSL+ + L N P S ++
Sbjct: 190 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN----PWDCSCPRI 245
Query: 296 VYL-RELNLSFNKLEGEIPSGG 316
YL R LN + K +G G
Sbjct: 246 DYLSRWLNKNSQKEQGSAKCSG 267
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 39/140 (27%)
Query: 244 IVGLKDLQFMDLAYNRSEG-PIPELFGDLTSLEVLNLSKNKISGPIPTSME--------- 293
I LK L+ +++A+N + +PE F +LT+LE L+LS NKI T +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 181
Query: 294 ------------------KLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGNELLCGL 335
K + L+EL L N+L+ +P GIF + +
Sbjct: 182 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPD-GIFDRLTSLQKIW------- 232
Query: 336 PNLQVQPCKVSKPRTEHKSR 355
L P S PR ++ SR
Sbjct: 233 --LHTNPWDCSCPRIDYLSR 250
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 111/262 (42%), Gaps = 41/262 (15%)
Query: 69 RNINLIGNPLDGFLPSSIGNLSM----SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEG 124
+N++L NPL +G+ S L+ L ++ C I A +LS+L L L G
Sbjct: 32 KNLDLSWNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 86
Query: 125 NKLTGPIPITFGRLQKLQGLDLAFNKLVG--SFPDELCHLARLAEFVILGN-KPSGSIPS 181
N + F L LQ L L +FP + HL L E + N S +P
Sbjct: 87 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPE 144
Query: 182 CLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRI-NLSKNNLSGDI 240
SNLT+L L L SN ++ I D L+VL ++ L+ +
Sbjct: 145 YFSNLTNLEHLDLSSNKIQSIYCTD----------------LRVLHQMPLLNLSLDLSLN 188
Query: 241 PATIV---GLKDLQFMDLAYNRSE-GPIPE-LFGDLTSLEVLNLSKNKISGPIPTSMEKL 295
P + K+++ +LA + ++ +P+ +F LTSL+ + L N P S ++
Sbjct: 189 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN----PWDCSCPRI 244
Query: 296 VYL-RELNLSFNKLEGEIPSGG 316
YL R LN + K +G G
Sbjct: 245 DYLSRWLNKNSQKEQGSAKCSG 266
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 39/140 (27%)
Query: 244 IVGLKDLQFMDLAYNRSEG-PIPELFGDLTSLEVLNLSKNKISGPIPTSME--------- 293
I LK L+ +++A+N + +PE F +LT+LE L+LS NKI T +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 294 ------------------KLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGNELLCGL 335
K + L+EL L N+L+ +P GIF + +
Sbjct: 181 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPD-GIFDRLTSLQKIW------- 231
Query: 336 PNLQVQPCKVSKPRTEHKSR 355
L P S PR ++ SR
Sbjct: 232 --LHTNPWDCSCPRIDYLSR 249
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 26/194 (13%)
Query: 119 ALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGS 178
++ L+ ++ + TF ++Q LDL L G P + + L + V+ N
Sbjct: 257 SINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQL 315
Query: 179 IPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLS- 237
++ SLR LY+ N K LD+G + NL K +LS
Sbjct: 316 CQINAASFPSLRDLYIKGNMRK-----------------LDLGTRCLEKLENLQKLDLSH 358
Query: 238 GDIPAT------IVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTS 291
DI A+ + L+ LQ+++L+YN G + F + LE+L+++ + P S
Sbjct: 359 SDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS 418
Query: 292 -MEKLVYLRELNLS 304
+ L LR LNLS
Sbjct: 419 PFQNLHLLRVLNLS 432
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 32/211 (15%)
Query: 110 AIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPD---ELCHLAR-- 164
+ NL +L L L N+ G F +L+ LD+AF L P + HL R
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 165 -LAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLD---- 219
L+ ++ S L+ L LR L L NS +D G +S
Sbjct: 430 NLSHCLL-----DTSNQHLLAGLQDLRHLNLQGNSFQD------------GSISKTNLLQ 472
Query: 220 -IGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLN 278
+G+L++L+ LS NL GL+++ +DL++N G + L L LN
Sbjct: 473 MVGSLEILI---LSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLN 528
Query: 279 LSKNKISGPIPTSMEKLVYLRELNLSFNKLE 309
++ N I P + L +NLS N L+
Sbjct: 529 MASNNIRIIPPHLLPALSQQSIINLSHNPLD 559
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 66 KKLRNINLIGNPLDGFLPSSIGNLSM--SLKTLIIANCSIIGNIRRAIGNLSNLLALTLE 123
+ LR++NL GN S L M SL+ LI+++C+++ ++A L N+ L L
Sbjct: 448 QDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLS 507
Query: 124 GNKLTGPIPITFGRLQKLQGLDL 146
N LTG + L L+GL L
Sbjct: 508 HNSLTGD---SMDALSHLKGLYL 527
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 108/254 (42%), Gaps = 26/254 (10%)
Query: 67 KLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNK 126
+++ ++L L+G LPS I ++ SLK L++ S + + +L L ++GN
Sbjct: 278 RVQELDLTAAHLNG-LPSGIEGMN-SLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNM 335
Query: 127 LTGPIPI-TFGRLQKLQGLDLAFNKLVGSFPDELCHLA----RLAEFVILG-NKPSGSIP 180
+ +L+ LQ LDL+ + + S + C+L R +++ L N+P G
Sbjct: 336 RKLDLGTRCLEKLENLQKLDLSHSDIEAS---DCCNLQLKNLRHLQYLNLSYNEPLGLED 392
Query: 181 SCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDI 240
L L D+ F P NL +L +NLS L
Sbjct: 393 QAFKECPQLE--------LLDVAFTHLHVKAPHSPFQ----NLHLLRVLNLSHCLLDTSN 440
Query: 241 PATIVGLKDLQFMDLAYNR-SEGPIPE--LFGDLTSLEVLNLSKNKISGPIPTSMEKLVY 297
+ GL+DL+ ++L N +G I + L + SLE+L LS + + L
Sbjct: 441 QHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRN 500
Query: 298 LRELNLSFNKLEGE 311
+ L+LS N L G+
Sbjct: 501 VNHLDLSHNSLTGD 514
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 16/185 (8%)
Query: 135 FGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPS-CLSNLTSLRSLY 193
F L L L+L N+L +L++L E + L N P SIPS + + SLR L
Sbjct: 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE-LWLRNNPIESIPSYAFNRIPSLRRLD 166
Query: 194 LGSNSLKDILF-----FDFSSNFLVGPLSL----DIGNLKVLVR---INLSKNNLSGDIP 241
LG LK + + F+ SN L++ +I NL L++ ++LS N+LS P
Sbjct: 167 LG--ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP 224
Query: 242 ATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLREL 301
+ GL LQ + + ++ + F +L SL +NL+ N ++ L +L +
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284
Query: 302 NLSFN 306
+L N
Sbjct: 285 HLHHN 289
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 111/262 (42%), Gaps = 41/262 (15%)
Query: 69 RNINLIGNPLDGFLPSSIGNLSM----SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEG 124
+N++L NPL +G+ S L+ L ++ C I A +LS+L L L G
Sbjct: 32 KNLDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 86
Query: 125 NKLTGPIPITFGRLQKLQGLDLAFNKLVG--SFPDELCHLARLAEFVILGN-KPSGSIPS 181
N + F L LQ L L +FP + HL L E + N S +P
Sbjct: 87 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPE 144
Query: 182 CLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRI-NLSKNNLSGDI 240
SNLT+L L L SN ++ I D L+VL ++ L+ +
Sbjct: 145 YFSNLTNLEHLDLSSNKIQSIYCTD----------------LRVLHQMPLLNLSLDLSLN 188
Query: 241 PATIV---GLKDLQFMDLAYNRSE-GPIPE-LFGDLTSLEVLNLSKNKISGPIPTSMEKL 295
P + K+++ +LA + ++ +P+ +F LTSL+ + L N P S ++
Sbjct: 189 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN----PWDCSCPRI 244
Query: 296 VYL-RELNLSFNKLEGEIPSGG 316
YL R LN + K +G G
Sbjct: 245 DYLSRWLNKNSQKEQGSAKCSG 266
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 68/250 (27%)
Query: 142 QGLDLAFNKLVG-------SFPD-ELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLY 193
+ LDL+FN L SFP+ ++ L+R I G+ S L+ L +L
Sbjct: 32 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI----EDGAYQS----LSHLSTLI 83
Query: 194 LGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFM 253
L N ++ + FS + +L+ LV + + NL+ I LK L+ +
Sbjct: 84 LTGNPIQSLALGAFSG----------LSSLQKLVAV---ETNLASLENFPIGHLKTLKEL 130
Query: 254 DLAYNRSEG-PIPELFGDLTSLEVLNLSKNKISGPIPTSME------------------- 293
++A+N + +PE F +LT+LE L+LS NKI T +
Sbjct: 131 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 190
Query: 294 --------KLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGNELLCGLPNLQVQPCKV 345
K + L+EL L N+L+ +P GIF + + L P
Sbjct: 191 NFIQPGAFKEIRLKELALDTNQLKS-VPD-GIFDRLTSLQKIW---------LHTNPWDC 239
Query: 346 SKPRTEHKSR 355
S PR ++ SR
Sbjct: 240 SCPRIDYLSR 249
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 198 SLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGD-IPATIVGLKDLQFMDLA 256
SL+++++ D S + L L + ++ N+ + +P L++L F+DL+
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 257 YNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIP 313
+ E P F L+SL+VLN++ N++ ++L L+++ L N + P
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 69 RNINLIGNPLDGFLPSSIGNLSM----SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEG 124
+N++L NPL +G+ S L+ L ++ C I A +LS+L L L G
Sbjct: 31 KNLDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 125 NKLTGPIPITFGRLQKLQGLDLAFNKLVG--SFPDELCHLARLAEFVILGN-KPSGSIPS 181
N + F L LQ L L +FP + HL L E + N S +P
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPE 143
Query: 182 CLSNLTSLRSLYLGSNSLKDILFFD 206
SNLT+L L L SN ++ I D
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTD 168
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 19/177 (10%)
Query: 194 LGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATI-VGLKDLQF 252
G+ SLK + D S N ++ +S + L+ L ++ +NL ++ + L++L +
Sbjct: 370 FGTTSLK---YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Query: 253 MDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGP-IPTSMEKLVYLRELNLSFNKLEGE 311
+D+++ + +F L+SLEVL ++ N +P +L L L+LS +LE
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 312 IPSGGIFTSFIAESFMGNELLCGLPN-------------LQVQPCKVSKPRTEHKSR 355
P+ S + M + L +P+ L P S PR ++ SR
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 542
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 244 IVGLKDLQFMDLAYNRSEG-PIPELFGDLTSLEVLNLSKNKISGPIPTSMEKL 295
I LK L+ +++A+N + +PE F +LT+LE L+LS NKI T + L
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 25/127 (19%)
Query: 182 CLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIP 241
CL+N++S + + +KD FS NF G L++ N K G P
Sbjct: 280 CLTNVSSFSLVSVTIERVKD-----FSYNF--GWQHLELVNCKF------------GQFP 320
Query: 242 ATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKIS--GPIPTSMEKLVYLR 299
+ LK L+ + N+ E+ DL SLE L+LS+N +S G S L+
Sbjct: 321 T--LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376
Query: 300 ELNLSFN 306
L+LSFN
Sbjct: 377 YLDLSFN 383
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 73 LIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTG-PI 131
L GNP+ + LS SL+ L+ ++ IG+L L L + N + +
Sbjct: 83 LTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 132 PITFGRLQKLQGLDLAFNKLVGSFPDEL 159
P F L L+ LDL+ NK+ + +L
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 111/262 (42%), Gaps = 41/262 (15%)
Query: 69 RNINLIGNPLDGFLPSSIGNLSM----SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEG 124
+N++L NPL +G+ S L+ L ++ C I A +LS+L L L G
Sbjct: 31 KNLDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 125 NKLTGPIPITFGRLQKLQGLDLAFNKLVG--SFPDELCHLARLAEFVILGN-KPSGSIPS 181
N + F L LQ L L +FP + HL L E + N S +P
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPE 143
Query: 182 CLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRI-NLSKNNLSGDI 240
SNLT+L L L SN ++ I D L+VL ++ L+ +
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTD----------------LRVLHQMPLLNLSLDLSLN 187
Query: 241 PATIV---GLKDLQFMDLAYNRSE-GPIPE-LFGDLTSLEVLNLSKNKISGPIPTSMEKL 295
P + K+++ +LA + ++ +P+ +F LTSL+ + L N P S ++
Sbjct: 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN----PWDCSCPRI 243
Query: 296 VYL-RELNLSFNKLEGEIPSGG 316
YL R LN + K +G G
Sbjct: 244 DYLSRWLNKNSQKEQGSAKCSG 265
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 68/250 (27%)
Query: 142 QGLDLAFNKLVG-------SFPD-ELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLY 193
+ LDL+FN L SFP+ ++ L+R I G+ S L+ L +L
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI----EDGAYQS----LSHLSTLI 82
Query: 194 LGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFM 253
L N ++ + FS + +L+ LV + + NL+ I LK L+ +
Sbjct: 83 LTGNPIQSLALGAFSG----------LSSLQKLVAV---ETNLASLENFPIGHLKTLKEL 129
Query: 254 DLAYNRSEG-PIPELFGDLTSLEVLNLSKNKISGPIPTSME------------------- 293
++A+N + +PE F +LT+LE L+LS NKI T +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189
Query: 294 --------KLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGNELLCGLPNLQVQPCKV 345
K + L+EL L N+L+ +P GIF + + L P
Sbjct: 190 NFIQPGAFKEIRLKELALDTNQLKS-VPD-GIFDRLTSLQKIW---------LHTNPWDC 238
Query: 346 SKPRTEHKSR 355
S PR ++ SR
Sbjct: 239 SCPRIDYLSR 248
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 111/262 (42%), Gaps = 41/262 (15%)
Query: 69 RNINLIGNPLDGFLPSSIGNLSM----SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEG 124
+N++L NPL +G+ S L+ L ++ C I A +LS+L L L G
Sbjct: 33 KNLDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 87
Query: 125 NKLTGPIPITFGRLQKLQGLDLAFNKLVG--SFPDELCHLARLAEFVILGN-KPSGSIPS 181
N + F L LQ L L +FP + HL L E + N S +P
Sbjct: 88 NPIQSLALGAFSGLSSLQKLVALETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPE 145
Query: 182 CLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRI-NLSKNNLSGDI 240
SNLT+L L L SN ++ I D L+VL ++ L+ +
Sbjct: 146 YFSNLTNLEHLDLSSNKIQSIYCTD----------------LRVLHQMPLLNLSLDLSLN 189
Query: 241 PATIV---GLKDLQFMDLAYNRSE-GPIPE-LFGDLTSLEVLNLSKNKISGPIPTSMEKL 295
P + K+++ +LA + ++ +P+ +F LTSL+ + L N P S ++
Sbjct: 190 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN----PWDCSCPRI 245
Query: 296 VYL-RELNLSFNKLEGEIPSGG 316
YL R LN + K +G G
Sbjct: 246 DYLSRWLNKNSQKEQGSAKCSG 267
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 39/140 (27%)
Query: 244 IVGLKDLQFMDLAYNRSEG-PIPELFGDLTSLEVLNLSKNKISGPIPTSME--------- 293
I LK L+ +++A+N + +PE F +LT+LE L+LS NKI T +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 181
Query: 294 ------------------KLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGNELLCGL 335
K + L+EL L N+L+ +P GIF + +
Sbjct: 182 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPD-GIFDRLTSLQKIW------- 232
Query: 336 PNLQVQPCKVSKPRTEHKSR 355
L P S PR ++ SR
Sbjct: 233 --LHTNPWDCSCPRIDYLSR 250
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 69 RNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLT 128
+NI+L NPL S N S L+ L ++ C I +A L +L L L GN +
Sbjct: 30 KNIDLSFNPLKILKSYSFSNFS-ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 88
Query: 129 GPIPITFGRLQKLQGLDLAFNKLVG--SFPDELCHLARLAEFVILGN-KPSGSIPSCLSN 185
P +F L L+ L KL SFP + L L + + N S +P+ SN
Sbjct: 89 SFSPGSFSGLTSLENLVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSN 146
Query: 186 LTSLRSLYLGSNSLKDI 202
LT+L + L N ++ I
Sbjct: 147 LTNLVHVDLSYNYIQTI 163
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 16/127 (12%)
Query: 134 TFGRLQKLQGLDLAFNKLVGSFPDELCH-LARLAEFVILGNKPSGSIPSCLSNLTSLRSL 192
+F +LQ LDL+ + + + D+ H L L+ ++ GN P S LTSL +L
Sbjct: 46 SFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 104
Query: 193 YLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNL-SGDIPATIVGLKDLQ 251
L + S IG L L ++N++ N + S +PA L +L
Sbjct: 105 VAVETKLASL-------------ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 252 FMDLAYN 258
+DL+YN
Sbjct: 152 HVDLSYN 158
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 123/340 (36%), Gaps = 85/340 (25%)
Query: 66 KKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGN 125
L N+ L GNP+ F P S L+ SL+ L+ + IG L L L + N
Sbjct: 75 HHLSNLILTGNPIQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNVAHN 133
Query: 126 KL-TGPIPITFGRLQKLQGLDLAFNKL---------------------------VGSFPD 157
+ + +P F L L +DL++N + + D
Sbjct: 134 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 193
Query: 158 ELCHLARLAEFVILGNKPSGSI-PSCLSNLTSL--RSLYLGS---------------NSL 199
+ +L E + GN S +I +CL NL L L LG L
Sbjct: 194 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 253
Query: 200 KDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSG-------DIPATI-------- 244
D+ +F + S DI L N+S +L+G D+P
Sbjct: 254 CDVTIDEFRLTY-TNDFSDDIVKFHCLA--NVSAMSLAGVSIKYLEDVPKHFKWQSLSII 310
Query: 245 -VGLKDLQFMDLAYNRS------EGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKL-- 295
LK +DL + +S +G I L SL L+LS+N +S S L
Sbjct: 311 RCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 370
Query: 296 VYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGNELLCGL 335
LR L+LSFN G I S +FMG E L L
Sbjct: 371 NSLRHLDLSFN--------GAIIMS---ANFMGLEELQHL 399
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 249 DLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKL 308
+L F+DL+ + E +F L L++LN+S N + + +L L L+ SFN++
Sbjct: 469 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 528
Query: 309 EGEIPSGGIFTSF 321
E S GI F
Sbjct: 529 E---TSKGILQHF 538
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 69 RNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLT 128
+NI+L NPL S N S L+ L ++ C I +A L +L L L GN +
Sbjct: 35 KNIDLSFNPLKILKSYSFSNFS-ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93
Query: 129 GPIPITFGRLQKLQGLDLAFNKLVG--SFPDELCHLARLAEFVILGN-KPSGSIPSCLSN 185
P +F L L+ L KL SFP + L L + + N S +P+ SN
Sbjct: 94 SFSPGSFSGLTSLENLVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 186 LTSLRSLYLGSNSLKDI 202
LT+L + L N ++ I
Sbjct: 152 LTNLVHVDLSYNYIQTI 168
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 16/127 (12%)
Query: 134 TFGRLQKLQGLDLAFNKLVGSFPDELCH-LARLAEFVILGNKPSGSIPSCLSNLTSLRSL 192
+F +LQ LDL+ + + + D+ H L L+ ++ GN P S LTSL +L
Sbjct: 51 SFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109
Query: 193 YLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNL-SGDIPATIVGLKDLQ 251
L + S IG L L ++N++ N + S +PA L +L
Sbjct: 110 VAVETKLASL-------------ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 252 FMDLAYN 258
+DL+YN
Sbjct: 157 HVDLSYN 163
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 123/340 (36%), Gaps = 85/340 (25%)
Query: 66 KKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGN 125
L N+ L GNP+ F P S L+ SL+ L+ + IG L L L + N
Sbjct: 80 HHLSNLILTGNPIQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 126 KL-TGPIPITFGRLQKLQGLDLAFNKL---------------------------VGSFPD 157
+ + +P F L L +DL++N + + D
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198
Query: 158 ELCHLARLAEFVILGNKPSGSI-PSCLSNLTSL--RSLYLGS---------------NSL 199
+ +L E + GN S +I +CL NL L L LG L
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258
Query: 200 KDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSG-------DIPATI-------- 244
D+ +F + S DI L N+S +L+G D+P
Sbjct: 259 CDVTIDEFRLTY-TNDFSDDIVKFHCLA--NVSAMSLAGVSIKYLEDVPKHFKWQSLSII 315
Query: 245 -VGLKDLQFMDLAYNRS------EGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKL-- 295
LK +DL + +S +G I L SL L+LS+N +S S L
Sbjct: 316 RCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375
Query: 296 VYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGNELLCGL 335
LR L+LSFN G I S +FMG E L L
Sbjct: 376 NSLRHLDLSFN--------GAIIMS---ANFMGLEELQHL 404
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 249 DLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKL 308
+L F+DL+ + E +F L L++LN+S N + + +L L L+ SFN++
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
Query: 309 EGEIPSGGIFTSF 321
E S GI F
Sbjct: 534 E---TSKGILQHF 543
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 20/140 (14%)
Query: 187 TSLRSLYLGSNSLKDI----------LFFDFSSNFLVGP-----LSLDIGNLKVLVRINL 231
+SL+ L L SN +K+ LF F +N +GP L L++ N + ++L
Sbjct: 181 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI-RNLSL 239
Query: 232 SKNNLSGDIPATIVGLK--DLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIP 289
S + LS T +GLK +L +DL+YN + F L LE L N I
Sbjct: 240 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 299
Query: 290 TSMEKLVYLRELNL--SFNK 307
S+ L +R LNL SF K
Sbjct: 300 HSLHGLFNVRYLNLKRSFTK 319
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 19/196 (9%)
Query: 98 IANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPD 157
+A+CS + + +N+ L L N+L F R +L LD+ FN + P
Sbjct: 18 VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP- 76
Query: 158 ELCH-LARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPL 216
ELC L L + N+ S + T+L L+L SNS++ I +N V
Sbjct: 77 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI-----KNNPFVKQ- 130
Query: 217 SLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPE---LFGDLTS 273
K L+ ++LS N LS T V L++LQ + L+ N+ + E +F + +S
Sbjct: 131 -------KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SS 182
Query: 274 LEVLNLSKNKISGPIP 289
L+ L LS N+I P
Sbjct: 183 LKKLELSSNQIKEFSP 198
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%)
Query: 229 INLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPI 288
+NL+ N L A L +D+ +N PEL L L+VLNL N++S
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 99
Query: 289 PTSMEKLVYLRELNLSFNKLE 309
+ L EL+L N ++
Sbjct: 100 DKTFAFCTNLTELHLMSNSIQ 120
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 105/279 (37%), Gaps = 62/279 (22%)
Query: 115 SNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP-DELCHLARLAEFVILGN 173
S L L L NK++ F L L+ LDL N++ E L + E + N
Sbjct: 391 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 450
Query: 174 KPSGSIPSCLSNLTSLRSLYLGSNSLKDI-------------LFFDFSSNFLVGPLSLDI 220
K + + + SL+ L L +LK++ D S+N + +
Sbjct: 451 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 510
Query: 221 GNLKVLVRINLSKNNLS--------GDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDL- 271
L+ L ++L NNL+ G + GL L ++L N + E+F DL
Sbjct: 511 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 570
Query: 272 -----------------------TSLEVLNLSKNKISGPIPTSMEKLVY------LRELN 302
SL+ LNL KN I TS+EK V+ L EL+
Sbjct: 571 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI-----TSVEKKVFGPAFRNLTELD 625
Query: 303 LSFNKLEGEIPSGGIFTSFIAESF-----MGNELLCGLP 336
+ FN + S F ++I E+ + + LC P
Sbjct: 626 MRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 664
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Query: 66 KKLRNINLIGNPLDGFLPSSIGNLSMS-LKTLIIANCSIIGN-IRRAIGNLSNLLALTLE 123
K+L+ + L N L F ++ +MS L+TL ++ S+ + R ++L L L
Sbjct: 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436
Query: 124 GNKLTGPIPITFGRLQ-KLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSC 182
N LTG + F L K++ LDL N+++ S P ++ HL L E + N+
Sbjct: 437 SNMLTGSV---FRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGV 492
Query: 183 LSNLTSLRSLYLGSN 197
LTSL+ ++L N
Sbjct: 493 FDRLTSLQYIWLHDN 507
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 185 NLTSLRSLYLGSNSL------------KDILFFDFSSNFLVGPLSLDIGNLKVLVRINLS 232
N++SL +L + NSL + IL + SSN L G + L V++
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDL 457
Query: 233 KNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIP 289
NN IP + L+ LQ +++A N+ + +F LTSL+ + L N P
Sbjct: 458 HNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 184 SNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNL-SGDIPA 242
S L L++L L N LK+ FF ++L N+ L +++S N+L S
Sbjct: 374 STLKRLQTLILQRNGLKN--FFK---------VALMTKNMSSLETLDVSLNSLNSHAYDR 422
Query: 243 TIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELN 302
T + + ++L+ N G + ++VL+L N+I IP + L L+ELN
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELN 479
Query: 303 LSFNKLEGEIPSG 315
++ N+L+ +P G
Sbjct: 480 VASNQLKS-VPDG 491
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 66/159 (41%), Gaps = 28/159 (17%)
Query: 214 GPLSLDIGNLKVLVRINLSKNNLSGDIPATIV-GLKDLQFMDLAYNRSEGPIPELFGDLT 272
GP+ G L L +NL N +IP + L +L+ +DL N +F +
Sbjct: 532 GPIYFLKG-LSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 589
Query: 273 SLEVLNLSKNKISGPIPTSMEKLVY------LRELNLSFNKLEGEIPSGGIFTSFIAESF 326
SL+ LNL KN I TS+EK V+ L EL++ FN + S F ++I E+
Sbjct: 590 SLKSLNLQKNLI-----TSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETH 644
Query: 327 -----MGNELLCGLPN---------LQVQPCKVSKPRTE 351
+ + LC P CK S P E
Sbjct: 645 TNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAPFEE 683
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 86/206 (41%), Gaps = 24/206 (11%)
Query: 120 LTLEGNKLTGPIPITFGRLQ--KLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSG 177
L+L ++L+ TF L+ L LDL++N L D L +L F + N
Sbjct: 232 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 291
Query: 178 SIPSCLSNLTSLRSLYLGSNSLKDILFF-------DFSSNFLVGPLSLDIGNLKVLVRIN 230
L L ++R L L + K + DFS +L K L +N
Sbjct: 292 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-----------KCLEHLN 340
Query: 231 LSKNNLSGDIPATIVGLKDLQFMDLA--YNRSEGPIPELFGDLTS--LEVLNLSKNKISG 286
+ N++ G GL +L+++ L+ + E F L L +LNL+KNKIS
Sbjct: 341 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 400
Query: 287 PIPTSMEKLVYLRELNLSFNKLEGEI 312
+ L +L L+L N++ E+
Sbjct: 401 IESDAFSWLGHLEVLDLGLNEIGQEL 426
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 19/196 (9%)
Query: 98 IANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPD 157
+A+CS + + +N+ L L N+L F R +L LD+ FN +
Sbjct: 13 VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEP 71
Query: 158 ELCH-LARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPL 216
ELC L L + N+ S + T+L L+L SNS++ I +N V
Sbjct: 72 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI-----KNNPFVKQ- 125
Query: 217 SLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPE---LFGDLTS 273
K L+ ++LS N LS T V L++LQ + L+ N+ + E +F + +S
Sbjct: 126 -------KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SS 177
Query: 274 LEVLNLSKNKISGPIP 289
L+ L LS N+I P
Sbjct: 178 LKKLELSSNQIKEFSP 193
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%)
Query: 229 INLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPI 288
+NL+ N L A L +D+ +N PEL L L+VLNL N++S
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 94
Query: 289 PTSMEKLVYLRELNLSFNKLE 309
+ L EL+L N ++
Sbjct: 95 DKTFAFCTNLTELHLMSNSIQ 115
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 24/189 (12%)
Query: 144 LDLAFNKLVGSFPDELCHLARLAEFVILGN--KPSGSIPSCLSNLTSLRSLYLGSNSL-- 199
LD + N L + + HL L ++ N K I + + SL+ L + NS+
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 200 ----------KDILFFDFSSNFLVGPLSLDIG-NLKVLVRINLSKNNLSGDIPATIVGLK 248
K +L + SSN L + + +KVL +L N + IP +V L+
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL---DLHSNKIKS-IPKQVVKLE 444
Query: 249 DLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYL-RELNLSFNK 307
LQ +++A N+ + +F LTSL+ + L N P S ++ YL R LN + K
Sbjct: 445 ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN----PWDCSCPRIDYLSRWLNKNSQK 500
Query: 308 LEGEIPSGG 316
+G G
Sbjct: 501 EQGSAKCSG 509
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 229 INLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPI 288
+N+S+N +S + I+ L L+ + +++NR + +F LE L+LS NK+ +
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL---V 82
Query: 289 PTSMEKLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFMG 328
S V L+ L+LSFN + +P F + F+G
Sbjct: 83 KISCHPTVNLKHLDLSFNAFDA-LPICKEFGNMSQLKFLG 121
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
Query: 214 GPLSLDIGNLKVLVRINLSKNNLSGDIPATIV-GLKDLQFMDLAYNRSEGPIPELFGDLT 272
GP+ G L L +NL N +IP + L +L+ +DL N +F +
Sbjct: 527 GPIYFLKG-LSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584
Query: 273 SLEVLNLSKNKISGPIPTSMEKLVY------LRELNLSFNKLEGEIPSGGIFTSFIAESF 326
SL+ LNL KN I TS+EK V+ L EL++ FN + S F ++I E+
Sbjct: 585 SLKSLNLQKNLI-----TSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETH 639
Query: 327 -----MGNELLCGLP 336
+ + LC P
Sbjct: 640 TNIPELSSHYLCNTP 654
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 86/206 (41%), Gaps = 24/206 (11%)
Query: 120 LTLEGNKLTGPIPITFGRLQ--KLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSG 177
L+L ++L+ TF L+ L LDL++N L D L +L F + N
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286
Query: 178 SIPSCLSNLTSLRSLYLGSNSLKDILFF-------DFSSNFLVGPLSLDIGNLKVLVRIN 230
L L ++R L L + K + DFS +L K L +N
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-----------KCLEHLN 335
Query: 231 LSKNNLSGDIPATIVGLKDLQFMDLA--YNRSEGPIPELFGDLTS--LEVLNLSKNKISG 286
+ N++ G GL +L+++ L+ + E F L L +LNL+KNKIS
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395
Query: 287 PIPTSMEKLVYLRELNLSFNKLEGEI 312
+ L +L L+L N++ E+
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQEL 421
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 19/196 (9%)
Query: 98 IANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPD 157
+A+CS + + +N+ L L N+L F R +L LD+ FN +
Sbjct: 8 VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEP 66
Query: 158 ELCH-LARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPL 216
ELC L L + N+ S + T+L L+L SNS++ I +N V
Sbjct: 67 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI-----KNNPFVKQ- 120
Query: 217 SLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPE---LFGDLTS 273
K L+ ++LS N LS T V L++LQ + L+ N+ + E +F + +S
Sbjct: 121 -------KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SS 172
Query: 274 LEVLNLSKNKISGPIP 289
L+ L LS N+I P
Sbjct: 173 LKKLELSSNQIKEFSP 188
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%)
Query: 229 INLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPI 288
+NL+ N L A L +D+ +N PEL L L+VLNL N++S
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89
Query: 289 PTSMEKLVYLRELNLSFNKLE 309
+ L EL+L N ++
Sbjct: 90 DKTFAFCTNLTELHLMSNSIQ 110
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 15/204 (7%)
Query: 144 LDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD-- 201
LDL NK+ + +L L +++ NK S P + L L LYL N LK+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 202 ------ILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNL--SGDIPATIVGLKDLQFM 253
+ N + L ++ + L N L SG G+K L ++
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176
Query: 254 DLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIP 313
+A + + IP+ G SL L+L NKI+ S++ L L +L LSFN + +
Sbjct: 177 RIA-DTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VD 232
Query: 314 SGGIF-TSFIAESFMGNELLCGLP 336
+G + T + E + N L +P
Sbjct: 233 NGSLANTPHLRELHLNNNKLVKVP 256
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 18/217 (8%)
Query: 113 NLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILG 172
NL NL L L NK++ P F L KL+ L L+ N+L P+++ L E +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHE 130
Query: 173 NKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLS 232
N+ + S + L + + LG+N LK SS G +K L I ++
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLK-------SSGIENGAFQ----GMKKLSYIRIA 179
Query: 233 KNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSM 292
N++ IP + L + L N+ L +L L LS N IS S+
Sbjct: 180 DTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 293 EKLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGN 329
+LREL+L+ NKL ++P G +I ++ N
Sbjct: 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 15/204 (7%)
Query: 144 LDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD-- 201
LDL NK+ + +L L +++ NK S P + L L LYL N LK+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 202 ------ILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNL--SGDIPATIVGLKDLQFM 253
+ N + L ++ + L N L SG G+K L ++
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176
Query: 254 DLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIP 313
+A + + IP+ G SL L+L NKI+ S++ L L +L LSFN + +
Sbjct: 177 RIA-DTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VD 232
Query: 314 SGGIF-TSFIAESFMGNELLCGLP 336
+G + T + E + N L +P
Sbjct: 233 NGSLANTPHLRELHLNNNKLVKVP 256
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 18/217 (8%)
Query: 113 NLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILG 172
NL NL L L NK++ P F L KL+ L L+ N+L P+++ L E +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHE 130
Query: 173 NKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLS 232
N+ + S + L + + LG+N LK SS G +K L I ++
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLK-------SSGIENGAFQ----GMKKLSYIRIA 179
Query: 233 KNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSM 292
N++ IP + L + L N+ L +L L LS N IS S+
Sbjct: 180 DTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 293 EKLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGN 329
+LREL+L+ NKL ++P G +I ++ N
Sbjct: 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 18/162 (11%)
Query: 181 SCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDI 240
S L LT+L L L N L+ + F + NLK LV L +N L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDK----------LTNLKELV---LVENQLQSLP 125
Query: 241 PATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRE 300
L +L +++LA+N+ + +F LT+L L+LS N++ +KL L++
Sbjct: 126 DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185
Query: 301 LNLSFNKLEGEIPSGGIFTSFIAESFM---GNELLCGLPNLQ 339
L L N+L+ +P G+F + ++ N C P ++
Sbjct: 186 LRLYQNQLKS-VPD-GVFDRLTSLQYIWLHDNPWDCTCPGIR 225
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 16/130 (12%)
Query: 186 LTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIV 245
L ++R L LG N L DI ++ NL L+ L+ N L
Sbjct: 62 LPNVRYLALGGNKLHDISALK------------ELTNLTYLI---LTGNQLQSLPNGVFD 106
Query: 246 GLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSF 305
L +L+ + L N+ + +F LT+L LNL+ N++ +KL L EL+LS+
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166
Query: 306 NKLEGEIPSG 315
N+L+ +P G
Sbjct: 167 NQLQS-LPEG 175
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 66 KKLRNIN---LIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTL 122
K+L N+ L GN L LP+ + + +LK L++ + L+NL L L
Sbjct: 82 KELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 123 EGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCH-LARLAEFVILGNKPSGSIPS 181
N+L F +L L LDL++N+L S P+ + L +L + + N+
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199
Query: 182 CLSNLTSLRSLYLGSN 197
LTSL+ ++L N
Sbjct: 200 VFDRLTSLQYIWLHDN 215
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 91/229 (39%), Gaps = 46/229 (20%)
Query: 97 IIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP 156
IIAN S I +++ I L N+ L L GNKL D++
Sbjct: 46 IIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH----------------DIS--------- 79
Query: 157 DELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDIL--FFDFSSNFLVG 214
L L L ++ GN+ LT+L+ L L N L+ + FD +N
Sbjct: 80 -ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN---- 134
Query: 215 PLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPE-LFGDLTS 273
L +NL+ N L L +L +DL+YN+ + +PE +F LT
Sbjct: 135 -----------LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQ 182
Query: 274 LEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGIFTSFI 322
L+ L L +N++ ++L L+ + L N + P + +I
Sbjct: 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 231
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 16/164 (9%)
Query: 193 YLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIV-GLKDLQ 251
YLG S ++F S N + + L L R + L+ IPA ++ +++L
Sbjct: 94 YLGIVSPTTLIFE--SDNLGMNITRQHLDRLHGLKRFRFTTRRLT-HIPANLLTDMRNLS 150
Query: 252 FMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGE 311
++L N E P LF DL +LE + NK+ K+ L++LNL+ N+L+
Sbjct: 151 HLELRANIEEMP-SHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKS- 208
Query: 312 IPSGGIFTSFIAESFMGNELLCGLPNLQVQPCKVSKPRTEHKSR 355
+P GIF + + L P S PR ++ SR
Sbjct: 209 VPD-GIFDRLTSLQKIW---------LHTNPWDCSCPRIDYLSR 242
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 26/184 (14%)
Query: 109 RAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEF 168
+ I L+NL L L GN++T P++ L KL L + NK+ L +L L E
Sbjct: 60 QGIEYLTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKITD--ISALQNLTNLREL 115
Query: 169 VILGNKPSGSIPSCLSNLTSLRSLYLGSN-SLKDILFFDFSSNFLVGPLSLDIGNLKVLV 227
+ N+ + S S L+NLT SL LG+N +L D+ PLS G L
Sbjct: 116 YL--NEDNISDISPLANLTKXYSLNLGANHNLSDL-----------SPLSNXTG----LN 158
Query: 228 RINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGP 287
+ ++++ + P I L DL + L YN+ E P LTSL N+I+
Sbjct: 159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI 214
Query: 288 IPTS 291
P +
Sbjct: 215 TPVA 218
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 23/179 (12%)
Query: 111 IGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVI 170
I NL++L +L+L N++ P+ L L N++ P + + RL I
Sbjct: 173 IANLTDLYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITP--VANXTRLNSLKI 228
Query: 171 LGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRIN 230
NK + P L+NL+ L L +G+N + DI + +L L +N
Sbjct: 229 GNNKITDLSP--LANLSQLTWLEIGTNQISDINA---------------VKDLTKLKXLN 271
Query: 231 LSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIP 289
+ N +S DI + + L L + L N+ E+ G LT+L L LS+N I+ P
Sbjct: 272 VGSNQIS-DI-SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 122/288 (42%), Gaps = 44/288 (15%)
Query: 92 SLKTLIIANCSIIGNIRRAIGN----LSNLLALTLEGNKLTGPIPITFG-RLQKLQGLDL 146
+L+ L + C++ G + GN L++L L L N + P +F +++ LDL
Sbjct: 104 NLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161
Query: 147 AFNKLVGSFPDELCH-------LARLAEFVILG-NKPSGSIPSCLSNL--TSLRSLYLGS 196
FNK+ ++L + L RL+ + N+ C + TS+ +L L
Sbjct: 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221
Query: 197 NSLKDIL---FFDFSSNFLVGPL----SLDIGNLKVLVRINLSKNNLSGDIPATIVGLK- 248
N K+ + FFD + + L S ++G+ + N T GL+
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS-------SFGHTNFKDPDNFTFKGLEA 274
Query: 249 -DLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNK 307
++ DL+ ++ + +F T LE L L++N+I+ + L +L+EL L N+
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQ 334
Query: 308 LEGEIPSGGIFTSFIAESFMGNELLCGLPNLQVQPCKVSKPRTEHKSR 355
L+ +P GIF + + L P S PR ++ SR
Sbjct: 335 LKS-VPD-GIFDRLTSLQKIW---------LHTNPWDCSCPRIDYLSR 371
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 69 RNINLIGNPLDGFLPSSIGNLSM----SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEG 124
+N++L NPL +G+ S L+ L ++ C I A +LS+L L L G
Sbjct: 55 KNLDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109
Query: 125 NKLTGPIPITFGRLQKLQGLDLAFNKLVG--SFPDELCHLARLAEFVILGNK-PSGSIPS 181
N + F L LQ L L +FP + HL L E + N S +P
Sbjct: 110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPE 167
Query: 182 CLSNLTSLRSLYLGSNSLKDILFFD 206
SNLT+L L L SN ++ I D
Sbjct: 168 YFSNLTNLEHLDLSSNKIQSIYCTD 192
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 198 SLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGD-IPATIVGLKDLQFMDLA 256
SL+++++ D S + L L + ++ N+ + +P L++L F+DL+
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502
Query: 257 YNRSEGPIPELFGDLTSLEVLNLSKN 282
+ E P F L+SL+VLN+S N
Sbjct: 503 QCQLEQLSPTAFNSLSSLQVLNMSHN 528
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 34/209 (16%)
Query: 96 LIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVG-- 153
L AN SI + + + N+ +E N P + F + LDL+FN L
Sbjct: 13 LAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFST----KNLDLSFNPLRHLG 68
Query: 154 -----SFPD-ELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDF 207
SFP+ ++ L+R I G+ S L+ L +L L N ++ + F
Sbjct: 69 SYSFFSFPELQVLDLSRCEIQTI----EDGAYQS----LSHLSTLILTGNPIQSLALGAF 120
Query: 208 SSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEG-PIPE 266
S + +L+ LV + + NL+ I LK L+ +++A+N + +PE
Sbjct: 121 SG----------LSSLQKLVAV---ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 167
Query: 267 LFGDLTSLEVLNLSKNKISGPIPTSMEKL 295
F +LT+LE L+LS NKI T + L
Sbjct: 168 YFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 25/127 (19%)
Query: 182 CLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIP 241
CL+N++S + + +KD FS NF G L++ N K G P
Sbjct: 304 CLTNVSSFSLVSVTIERVKD-----FSYNF--GWQHLELVNCKF------------GQFP 344
Query: 242 ATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKIS--GPIPTSMEKLVYLR 299
+ LK L+ + N+ E+ DL SLE L+LS+N +S G S + L+
Sbjct: 345 T--LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLK 400
Query: 300 ELNLSFN 306
L+LSFN
Sbjct: 401 YLDLSFN 407
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 194 LGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATI-VGLKDLQF 252
G+ SLK + D S N ++ +S + L+ L ++ +NL ++ + L++L +
Sbjct: 394 FGTISLK---YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449
Query: 253 MDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGP-IPTSMEKLVYLRELNLSFNKLEGE 311
+D+++ + +F L+SLEVL ++ N +P +L L L+LS +LE
Sbjct: 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 312 IPSG 315
P+
Sbjct: 510 SPTA 513
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 68 LRNINLIGNPL-DGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNK 126
L + + GN + FLP L +L L ++ C + A +LS+L L + N
Sbjct: 471 LEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529
Query: 127 LTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHL 162
+ L LQ LD + N ++ S EL H
Sbjct: 530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 144 LDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDIL 203
LDL N++ DE L E + N S P +NL +LR+L L SN LK I
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 204 FFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGP 263
F+ L LDI K+++ ++ +L ++ + VG DL ++ +R+
Sbjct: 97 LGVFTG--LSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYIS---HRA--- 147
Query: 264 IPELFGDLTSLEVLNLSKNKISGPIPTS----MEKLVYLRELNLSFNKLE 309
F L SLE L L K ++ IPT + L+ LR +L+ N +
Sbjct: 148 ----FSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIR 192
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 101/239 (42%), Gaps = 26/239 (10%)
Query: 114 LSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVI--- 170
LSNL L + NK+ + F L L+ L++ N LV L L + +
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 171 -LGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLS------LDIGNL 223
L + P+ ++ S L L LR +L N+++D + F + + L LD
Sbjct: 163 NLTSIPTEAL-SHLHGLIVLRLRHLNINAIRD---YSFKRLYRLKVLEISHWPYLDTMTP 218
Query: 224 KVLVRINLS-----KNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLN 278
L +NL+ NL+ + L L+F++L+YN + +L L+ +
Sbjct: 219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278
Query: 279 LSKNKISGPIPTSMEKLVYLRELNLSFNKL----EGEIPSGGIFTSFIAESFMGNELLC 333
L +++ P + L YLR LN+S N+L E S G + I +S N L C
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS---NPLAC 334
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 228 RINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGP 287
+++L L+ AT GL L +++L YN+ + +F DLT L L L+ N+++
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 288 IPTSMEKLVYLRELNLSFNKLEGEIPSG 315
+ L L +L L N+L+ +PSG
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLK-SLPSG 125
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 114 LSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLV----GSFPDELCHLARLAEFV 169
L+ L L L+ N+L F L +L L LA N+L G F HL +L +
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD----HLTQLDKLY 113
Query: 170 ILGNKPSGSIPS-CLSNLTSLRSLYLGSNSLKDI 202
+ GN+ S+PS LT L+ L L +N L+ I
Sbjct: 114 LGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSI 146
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 267 LFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGI--FTSFIAE 324
+F LT L+ L L+ N++ + +KL L+ L+LS N+L+ +P G
Sbjct: 126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTI 184
Query: 325 SFMGNELLC 333
+ GN+ C
Sbjct: 185 TLFGNQFDC 193
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 69 RNINLIGNPLDGFLPSSIGNLSM----SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEG 124
+N++L NPL +G+ S L+ L ++ C I A +LS+L L L G
Sbjct: 31 KNLDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 125 NKLTGPIPITFGRLQKLQGLDLAFNKLVG--SFPDELCHLARLAEFVILGNK-PSGSIPS 181
N + F L LQ L L +FP + HL L E + N S +P
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPE 143
Query: 182 CLSNLTSLRSLYLGSNSLKDILFFD 206
SNLT+L L L SN ++ I D
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTD 168
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 198 SLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGD-IPATIVGLKDLQFMDLA 256
SL+++++ D S + L L + ++ N+ + +P L++L F+DL+
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 257 YNRSEGPIPELFGDLTSLEVLNLSKN 282
+ E P F L+SL+VLN+S N
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 244 IVGLKDLQFMDLAYNRSEG-PIPELFGDLTSLEVLNLSKNKISGPIPTSMEKL 295
I LK L+ +++A+N + +PE F +LT+LE L+LS NKI T + L
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 194 LGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATI-VGLKDLQF 252
G+ SLK + D S N ++ +S + L+ L ++ +NL ++ + L++L +
Sbjct: 370 FGTTSLK---YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Query: 253 MDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGP-IPTSMEKLVYLRELNLSFNKLEGE 311
+D+++ + +F L+SLEVL ++ N +P +L L L+LS +LE
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 312 IPSG 315
P+
Sbjct: 486 SPTA 489
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 25/128 (19%)
Query: 181 SCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDI 240
+CL+N++S + + +KD FS NF G L++ N K G
Sbjct: 279 NCLTNVSSFSLVSVTIERVKD-----FSYNF--GWQHLELVNCKF------------GQF 319
Query: 241 PATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKIS--GPIPTSMEKLVYL 298
P + LK L+ + N+ E+ DL SLE L+LS+N +S G S L
Sbjct: 320 PT--LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375
Query: 299 RELNLSFN 306
+ L+LSFN
Sbjct: 376 KYLDLSFN 383
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 73 LIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTG-PI 131
L GNP+ + LS SL+ L+ ++ IG+L L L + N + +
Sbjct: 83 LTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 132 PITFGRLQKLQGLDLAFNKLVGSFPDEL 159
P F L L+ LDL+ NK+ + +L
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 68 LRNINLIGNPL-DGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNK 126
L + + GN + FLP L +L L ++ C + A +LS+L L + N
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
Query: 127 LTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHL 162
+ L LQ LD + N ++ S EL H
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 88/203 (43%), Gaps = 21/203 (10%)
Query: 114 LSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGN 173
L +L AL L NK++ F L+KLQ L ++ N LV P L + L E I N
Sbjct: 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDN 133
Query: 174 KPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSK 233
+ S L ++ + +G N L++ F P + D L L RI+ +K
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGF---------EPGAFDGLKLNYL-RISEAK 183
Query: 234 -NNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSM 292
+ D+P T L + L +N+ + E + L L L N+I S+
Sbjct: 184 LTGIPKDLPET------LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237
Query: 293 EKLVYLRELNLSFNKLEGEIPSG 315
L LREL+L NKL +P+G
Sbjct: 238 SFLPTLRELHLDNNKL-SRVPAG 259
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Query: 68 LRNINLI---GNPLD--GFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTL 122
LRN+N I GNPL+ GF P + L L L I+ + G I + + N L L
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLK--LNYLRISEAKLTG-IPKDLPETLN--ELHL 200
Query: 123 EGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSC 182
+ NK+ R KL L L N++ L L L E + NK S +P+
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259
Query: 183 LSNLTSLRSLYLGSNSLKDILFFDF 207
L +L L+ +YL +N++ + DF
Sbjct: 260 LPDLKLLQVVYLHTNNITKVGVNDF 284
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 22/169 (13%)
Query: 144 LDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDIL 203
LDL N + D+ L L V++ NK S S L L+ LY+ N L +I
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI- 117
Query: 204 FFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSE-- 261
P +L LV + + N + GL+++ +++ N E
Sbjct: 118 -----------PPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162
Query: 262 GPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEG 310
G P F L L L +S+ K++G IP + + L EL+L NK++
Sbjct: 163 GFEPGAFDGL-KLNYLRISEAKLTG-IPKDLPET--LNELHLDHNKIQA 207
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 198 SLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGD-IPATIVGLKDLQFMDLA 256
SL+++++ D S + L L + ++ N+ + +P L++L F+DL+
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 257 YNRSEGPIPELFGDLTSLEVLNLSKN 282
+ E P F L+SL+VLN+S N
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHN 209
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 194 LGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATI-VGLKDLQF 252
G+ SLK + D S N ++ +S + L+ L ++ +NL ++ + L++L +
Sbjct: 75 FGTTSLK---YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130
Query: 253 MDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGP-IPTSMEKLVYLRELNLSFNKLEGE 311
+D+++ + +F L+SLEVL ++ N +P +L L L+LS +LE
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190
Query: 312 IPSG 315
P+
Sbjct: 191 SPTA 194
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 228 RINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGP 287
+++L L+ AT GL L +++L YN+ + +F DLT L L L+ N+++
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 288 IPTSMEKLVYLRELNLSFNKLEGEIPSG 315
+ L L +L L N+L+ +PSG
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLK-SLPSG 125
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 114 LSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKL----VGSFPDELCHLARLAEFV 169
L+ L L L+ N+L F L +L L LA N+L +G F HL +L +
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD----HLTQLDKLY 113
Query: 170 ILGNKPSGSIPS-CLSNLTSLRSLYLGSNSLKDI 202
+ GN+ S+PS LT L+ L L +N L+ I
Sbjct: 114 LGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSI 146
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 67 KLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNK 126
+L + L GN L LPS + + LK L + + A L+NL L+L N+
Sbjct: 108 QLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 127 LTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFV 169
L F RL KLQ + L N+ F C + L++++
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGNQ----FDCSRCEILYLSQWI 205
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 231 LSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPT 290
LS N+L+ V + +L+++DL+ N LF DL +LEVL L N I
Sbjct: 71 LSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN 130
Query: 291 SMEKLVYLRELNLSFNKL 308
+ E + L++L LS N++
Sbjct: 131 AFEDMAQLQKLYLSQNQI 148
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 226 LVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKIS 285
L ++ L++N ++ GL L ++L+ N +F +L LEVL+LS N I
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 286 GPIPTSMEKLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGNELLCGLPNLQVQPCKV 345
S L L+EL L N+L+ +P GIF + + L P
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKS-VPD-GIFDRLTSLQKIW---------LHTNPWDC 409
Query: 346 SKPRTEHKSR 355
S PR ++ SR
Sbjct: 410 SCPRIDYLSR 419
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 44/106 (41%)
Query: 92 SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKL 151
L+ L +A I A L++LL L L N L F L KL+ LDL++N +
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
Query: 152 VGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSN 197
L L E + N+ LTSL+ ++L +N
Sbjct: 360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 21/154 (13%)
Query: 160 CHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLD 219
C L++ F +L S S+ T L L L N + I N G
Sbjct: 280 CDLSKSKIFALL--------KSVFSHFTDLEQLTLAQNEINKI-----DDNAFWG----- 321
Query: 220 IGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNL 279
L L+++NLS+N L L L+ +DL+YN + F L +L+ L L
Sbjct: 322 ---LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378
Query: 280 SKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIP 313
N++ ++L L+++ L N + P
Sbjct: 379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 11/129 (8%)
Query: 227 VRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISG 286
R+ L N L L L + L+ N+ + +F LT L +L L +NK+
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 287 PIPTSMEKLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGNELLCGLPNLQVQPCKVS 346
+KL L+EL L N+L+ +P GIF + + L P S
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKS-VPD-GIFDRLTSLQKIW---------LHTNPWDCS 139
Query: 347 KPRTEHKSR 355
PR ++ SR
Sbjct: 140 CPRIDYLSR 148
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 247 LKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKN 282
LKDL+ ++LAYN+ E F L +L+VLNLS N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 11/150 (7%)
Query: 206 DFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIP 265
D S F+ S LK L +NL+ N ++ GL +LQ ++L+YN
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331
Query: 266 ELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLE--GEIPSGGIFTSFIA 323
F L + ++L KN I+ + + L L+ L+L N L IPS I
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS-------IP 384
Query: 324 ESFMGNELLCGLP--NLQVQPCKVSKPRTE 351
+ F+ L LP NL +S+ R E
Sbjct: 385 DIFLSGNKLVTLPKINLTANLIHLSENRLE 414
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 243 TIVGL--KDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRE 300
T GL ++ +DL++ +F L L+VLNL+ NKI+ + L L+
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318
Query: 301 LNLSFNKLEGEIPSGGIF 318
LNLS+N L GE+ S +
Sbjct: 319 LNLSYNLL-GELYSSNFY 335
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 39/201 (19%)
Query: 120 LTLEGNKLTGPIPITFGRLQKLQGLDLAFNKL-----VGSFPDELCHLARLAEFVILGNK 174
+ L+ N + TF L+KLQ LDL N L + S PD + L
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD-----------IFLSGN 391
Query: 175 PSGSIPSCLSNLTSLRSLYLGSNSLK--DILFFDFSSNFLVGPLSLDIGNLKVLVRINLS 232
++P NLT+ ++L N L+ DIL+F L + +L++L+
Sbjct: 392 KLVTLPKI--NLTA-NLIHLSENRLENLDILYF-----------LLRVPHLQILILNQNR 437
Query: 233 KNNLSGD-IPATIVGLKDL----QFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGP 287
++ SGD P+ L+ L + LA+ ++F L+ L+VL L+ N ++
Sbjct: 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETE--LCWDVFEGLSHLQVLYLNHNYLNSL 495
Query: 288 IPTSMEKLVYLRELNLSFNKL 308
P L LR L+L+ N+L
Sbjct: 496 PPGVFSHLTALRGLSLNSNRL 516
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 86/209 (41%), Gaps = 33/209 (15%)
Query: 186 LTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIV 245
L+ L+ LYL N L + FS + LSL+ L VL D+PA
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH---------NDLPA--- 526
Query: 246 GLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSF 305
+L+ +D++ N+ P P++F SL VL+++ NK S ++ LN +
Sbjct: 527 ---NLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS----TFINWLNHTN 576
Query: 306 NKLEGEIPSGGIFTSFIAESFMGNELLCGLPNLQVQPCKVSKPRTEHKSRKKILLIVIVF 365
+ G P I+ + +SF G L +L + C + KS K L IV
Sbjct: 577 VTIAG--PPADIYCVY-PDSFSGVSLF----SLSTEGCDEEEVL---KSLKFSLFIVCTV 626
Query: 366 PLSIAL-TIAITLPLKSKLIECGKTCTVL 393
L++ L TI + C KT L
Sbjct: 627 TLTLFLMTILTVTKFRGFCFICYKTAQRL 655
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 79/168 (47%), Gaps = 20/168 (11%)
Query: 97 IIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP 156
IIAN S I +++ I L N+ L L GNKLT P+T L+ L L L NK+
Sbjct: 48 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSS 104
Query: 157 DELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPL 216
+ + G S + L +L L SLYLG+N + DI S + L
Sbjct: 105 LKDLKKLKSLSLEHNG----ISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTL 158
Query: 217 SLD---------IGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDL 255
SL+ + L L + LSKN++S D+ A + GLK+L ++L
Sbjct: 159 SLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLEL 204
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 231 LSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIP-ELFGDLTSLEVLNLSKNKISGPIP 289
L N ++ P L +L+ + L N+ G +P +F LT L VL+L N+++
Sbjct: 47 LHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPS 105
Query: 290 TSMEKLVYLRELNLSFNKLEGEIPSG 315
++LV+L+EL + NKL E+P G
Sbjct: 106 AVFDRLVHLKELFMCCNKLT-ELPRG 130
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 113 NLSNLLALTLEGNKLTGPIPI-TFGRLQKLQGLDLAFNKLV---GSFPDELCHLARLAEF 168
+L NL L L N+L G +P+ F L +L LDL N+L + D L H L E
Sbjct: 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH---LKEL 117
Query: 169 VILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
+ NK + +P + LT L L L N LK I
Sbjct: 118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI 150
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 41/156 (26%)
Query: 180 PSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGD 239
P +L +L+ LYLGSN L G L V V +L++
Sbjct: 57 PGVFDSLINLKELYLGSNQL---------------------GALPVGVFDSLTQ------ 89
Query: 240 IPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLR 299
L +DL N+ +F L L+ L + NK++ +P +E+L +L
Sbjct: 90 ----------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLT 138
Query: 300 ELNLSFNKLEGEIPSGGI--FTSFIAESFMGNELLC 333
L L N+L+ IP G +S GN C
Sbjct: 139 HLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWDC 173
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 83/188 (44%), Gaps = 38/188 (20%)
Query: 97 IIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP 156
IIAN S I +++ I L NL +L L N++T PI + L + L L NKL P
Sbjct: 49 IIANNSDIKSVQ-GIQYLPNLTSLNLSNNQITDISPIQY--LPNVTKLFLNGNKLTDIKP 105
Query: 157 DELCHLARLAEFVILGNKPSG--------------------SIPSCLSNLTSLRSLYLGS 196
L +L L + NK S + L +L L SLYLG+
Sbjct: 106 --LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGN 163
Query: 197 NSLKDILFFDFSSNFLVGPLSLD---------IGNLKVLVRINLSKNNLSGDIPATIVGL 247
N + DI S + LSL+ + L L + LSKN++S D+ A + GL
Sbjct: 164 NKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGL 219
Query: 248 KDLQFMDL 255
K+L ++L
Sbjct: 220 KNLDVLEL 227
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 30/128 (23%)
Query: 66 KKLRNINLIGNPLDGFLPSSIGNLSMSLKTLII-----------------------ANCS 102
KKLR I+L N + P + L SL +L++ N +
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN 114
Query: 103 IIGNIR-RAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCH 161
I +R A +L NL L+L NKL TF L+ +Q + LA N + CH
Sbjct: 115 KINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD-----CH 169
Query: 162 LARLAEFV 169
L LA+++
Sbjct: 170 LKWLADYL 177
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Query: 120 LTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSI 179
+ LE N + P F +KL+ +DL+ N++ PD L L V+ GNK
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK----- 91
Query: 180 PSCLSNLTSL-RSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSG 238
+T L +SL+ G SL+ +L N L D+ NL +L +L N L
Sbjct: 92 ------ITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLL---SLYDNKLQT 142
Query: 239 DIPATIVGLKDLQFMDLAYN 258
T L+ +Q M LA N
Sbjct: 143 IAKGTFSPLRAIQTMHLAQN 162
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 224 KVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNK 283
+ + I L +N + P K L+ +DL+ N+ P+ F L SL L L NK
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 284 ISGPIPTSM 292
I+ +P S+
Sbjct: 92 IT-ELPKSL 99
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 21/107 (19%)
Query: 208 SSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPEL 267
S N + GP+++++ LK L NNL+ A ++ L +DL+YN E +
Sbjct: 216 SINVVRGPVNVELTILK------LQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 267
Query: 268 FGDLTSLEVLNLSKNKISG------PIPTSMEKLVYLRELNLSFNKL 308
F + LE L +S N++ PIPT L+ L+LS N L
Sbjct: 268 FVKMQRLERLYISNNRLVALNLYGQPIPT-------LKVLDLSHNHL 307
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 16/156 (10%)
Query: 181 SCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDI 240
S L LT+L L L N L+ + F + NLK LV L +N L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDK----------LTNLKELV---LVENQLQSLP 125
Query: 241 PATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRE 300
L +L ++ L +N+ + +F LT+L L+L N++ +KL L++
Sbjct: 126 DGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQ 185
Query: 301 LNLSFNKLEGEIPSG--GIFTSFIAESFMGNELLCG 334
L+L+ N+L+ +P G TS + N C
Sbjct: 186 LSLNDNQLKS-VPDGVFDRLTSLTHIWLLNNPWDCA 220
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 66 KKLRNIN---LIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTL 122
K+L N+ L GN L LP+ + + +LK L++ + L+NL L L
Sbjct: 82 KELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 123 EGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP----DELCHLARLAEFVILGNKPSGS 178
N+L F +L L LDL N+L S P D+L L +L+ L + S
Sbjct: 141 YHNQLQSLPKGVFDKLTNLTRLDLDNNQL-QSLPEGVFDKLTQLKQLS----LNDNQLKS 195
Query: 179 IPS-CLSNLTSLRSLYLGSN----SLKDILFF 205
+P LTSL ++L +N + DIL+
Sbjct: 196 VPDGVFDRLTSLTHIWLLNNPWDCACSDILYL 227
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 209 SNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELF 268
SN + +S +I L R+ L+ N+L+ ++PA I L +L+ +DL++NR +P
Sbjct: 232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAEL 289
Query: 269 GDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEI 312
G L+ N ++ +P L L+ L + N LE +
Sbjct: 290 GSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQF 332
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 95 TLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGS 154
T + N + + + I NLSNL L L N+LT +P G +L+ F+ +V +
Sbjct: 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYF-YFFDNMVTT 307
Query: 155 FPDELCHLARLAEFVILGN 173
P E +L L + GN
Sbjct: 308 LPWEFGNLCNLQFLGVEGN 326
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 30/128 (23%)
Query: 66 KKLRNINLIGNPLDGFLPSSIGNLSMSLKTLII-----------------------ANCS 102
KKLR I+L N + P + L SL +L++ N +
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN 114
Query: 103 IIGNIR-RAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCH 161
I +R A +L NL L+L NKL TF L+ +Q + LA N + CH
Sbjct: 115 KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD-----CH 169
Query: 162 LARLAEFV 169
L LA+++
Sbjct: 170 LKWLADYL 177
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Query: 120 LTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSI 179
+ LE N + P F +KL+ +DL+ N++ PD L L V+ GNK
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK----- 91
Query: 180 PSCLSNLTSL-RSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSG 238
+T L +SL+ G SL+ +L N L D+ NL +L +L N L
Sbjct: 92 ------ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL---SLYDNKLQT 142
Query: 239 DIPATIVGLKDLQFMDLAYN 258
T L+ +Q M LA N
Sbjct: 143 IAKGTFSPLRAIQTMHLAQN 162
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 224 KVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNK 283
+ + I L +N + P K L+ +DL+ N+ P+ F L SL L L NK
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 284 ISGPIPTSM 292
I+ +P S+
Sbjct: 92 IT-ELPKSL 99
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 4/148 (2%)
Query: 80 GFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQ 139
G L S L+ ++K+L ++N I + NL AL L N + +F L
Sbjct: 15 GSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 74
Query: 140 KLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSI--PSCLSNLTSLRSLYLGS- 196
L+ LDL++N L L+ L +LGN P ++ S S+LT L+ L +G+
Sbjct: 75 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNM 133
Query: 197 NSLKDILFFDFSSNFLVGPLSLDIGNLK 224
++ I DF+ + L +D +L+
Sbjct: 134 DTFTKIQRKDFAGLTFLEELEIDASDLQ 161
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 21/107 (19%)
Query: 208 SSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPEL 267
S N + GP+++++ LK L NNL+ A ++ L +DL+YN E +
Sbjct: 222 SINVVRGPVNVELTILK------LQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 273
Query: 268 FGDLTSLEVLNLSKNKISG------PIPTSMEKLVYLRELNLSFNKL 308
F + LE L +S N++ PIPT L+ L+LS N L
Sbjct: 274 FVKMQRLERLYISNNRLVALNLYGQPIPT-------LKVLDLSHNHL 313
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 267 LFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSG 315
+F LTSL LNLS N++ +KL L+EL L+ N+L+ +P G
Sbjct: 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDG 118
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 5/139 (3%)
Query: 204 FFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGP 263
+ D +N L + L L ++ L N L L L +++L+ N+ +
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 264 IPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGIFTSFIA 323
+F LT L+ L L+ N++ +KL L++L L N+L+ +P G+F +
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPD-GVFDRLTS 149
Query: 324 ESFM---GNELLCGLPNLQ 339
++ N C P ++
Sbjct: 150 LQYIWLHDNPWDCTCPGIR 168
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 114 LSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELC-HLARLAEFVILG 172
L++L L L GNKL F +L L L+L+ N+L S P+ + L +L E +
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNT 109
Query: 173 NKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
N+ LT L+ L L N LK +
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSV 139
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 4/148 (2%)
Query: 80 GFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQ 139
G L S L+ ++K+L ++N I + NL AL L N + +F L
Sbjct: 41 GSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100
Query: 140 KLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSI--PSCLSNLTSLRSLYLGS- 196
L+ LDL++N L L+ L +LGN P ++ S S+LT L+ L +G+
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNM 159
Query: 197 NSLKDILFFDFSSNFLVGPLSLDIGNLK 224
++ I DF+ + L +D +L+
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQ 187
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 22/169 (13%)
Query: 97 IIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP 156
IIAN S I +++ I L N+ L L GNKLT P+T L+ L L L NK+
Sbjct: 69 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDL-- 123
Query: 157 DELCHLARLAEFVILGNKPSG-SIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGP 215
L L + L + +G S + L +L L SLYLG+N + DI +
Sbjct: 124 ---SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKL--DT 178
Query: 216 LSLD---------IGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDL 255
LSL+ + L L + LSKN++S D+ A + GLK+L ++L
Sbjct: 179 LSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLEL 225
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 22/169 (13%)
Query: 97 IIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP 156
IIAN S I +++ I L N+ L L GNKLT P+T L+ L L L NK+
Sbjct: 69 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDL-- 123
Query: 157 DELCHLARLAEFVILGNKPSG-SIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGP 215
L L + L + +G S + L +L L SLYLG+N + DI +
Sbjct: 124 ---SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKL--DT 178
Query: 216 LSLD---------IGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDL 255
LSL+ + L L + LSKN++S D+ A + GLK+L ++L
Sbjct: 179 LSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 22/169 (13%)
Query: 97 IIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP 156
IIAN S I +++ I L N+ L L GNKLT P+T L+ L L L NK+
Sbjct: 69 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDL-- 123
Query: 157 DELCHLARLAEFVILGNKPSG-SIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGP 215
L L + L + +G S + L +L L SLYLG+N + DI +
Sbjct: 124 ---SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKL--DT 178
Query: 216 LSLD---------IGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDL 255
LSL+ + L L + LSKN++S D+ A + GLK+L ++L
Sbjct: 179 LSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLEL 225
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 22/169 (13%)
Query: 97 IIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP 156
IIAN S I +++ I L N+ L L GNKLT P+ L+ L L L NK+
Sbjct: 51 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPL--ANLKNLGWLFLDENKVKDL-- 105
Query: 157 DELCHLARLAEFVILGNKPSG-SIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGP 215
L L + L + +G S + L +L L SLYLG+N + DI S +
Sbjct: 106 ---SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDT 160
Query: 216 LSLD---------IGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDL 255
LSL+ + L L + LSKN++S D+ A + GLK+L ++L
Sbjct: 161 LSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLEL 207
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 83/169 (49%), Gaps = 22/169 (13%)
Query: 97 IIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP 156
IIAN S I +++ I L N+ L L GNKLT P+T L+ L L L NK+
Sbjct: 46 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDL-- 100
Query: 157 DELCHLARLAEFVILGNKPSG-SIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGP 215
L L + L + +G S + L +L L SLYLG+N + DI S +
Sbjct: 101 ---SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDT 155
Query: 216 LSLD---------IGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDL 255
LSL+ + L L + LSKN++S D+ A + GLK+L ++L
Sbjct: 156 LSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLEL 202
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 14/201 (6%)
Query: 111 IGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKL-VGSFPDELCHLARLAEFV 169
+ NLS+L +L L N+ F +L+ LDLAF +L V +L L
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431
Query: 170 ILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLD-IGNLKVLVR 228
+ + S L +L+ L L N F + SL +G L++LV
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNH--------FPKGNIQKTNSLQTLGRLEILV- 482
Query: 229 INLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPI 288
LS +LS LK + +DL++NR E L + LNL+ N IS +
Sbjct: 483 --LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539
Query: 289 PTSMEKLVYLRELNLSFNKLE 309
P+ + L R +NL N L+
Sbjct: 540 PSLLPILSQQRTINLRQNPLD 560
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 226 LVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKIS 285
L ++L+ +LS ++P+ +VGL L+ + L+ N+ E + SL L++ N
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 286 GPIPT-SMEKLVYLRELNLSFNKLE 309
+ T +E L LREL+LS + +E
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIE 363
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 115/272 (42%), Gaps = 62/272 (22%)
Query: 84 SSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLA-LTLEGNKLTGPIPITFGRLQKLQ 142
+ + L SLK+L++ N ++ +A+ +L LL L + N+L + K+
Sbjct: 104 TELPELPQSLKSLLVDNNNL-----KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKII 158
Query: 143 GLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
+D N + PD L EF+ GN +P L NL L ++Y +NSLK +
Sbjct: 159 DVD---NNSLKKLPD----LPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKL 210
Query: 203 LFFDFSSNFLVGPLSL-----DIGNLKVLVRINLSKNNLS--GDIPATIVGL-------- 247
S +V ++ ++ NL L I N L D+P ++ L
Sbjct: 211 PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLT 270
Query: 248 ------KDLQFMDLAYN----RSEGPIPELFG------------DLT-SLEVLNLSKNK- 283
+ L F+D++ N SE P P L+ DL SLE LN+S NK
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELP-PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL 329
Query: 284 ISGP-IPTSMEKLVYLRELNLSFNKLEGEIPS 314
I P +P +E+L+ SFN L E+P
Sbjct: 330 IELPALPPRLERLIA------SFNHL-AEVPE 354
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 22/169 (13%)
Query: 97 IIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP 156
IIAN S I +++ I L N+ L L GNKLT P+ L+ L L L NK+
Sbjct: 51 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPL--ANLKNLGWLFLDENKVKDL-- 105
Query: 157 DELCHLARLAEFVILGNKPSG-SIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGP 215
L L + L + +G S + L +L L SLYLG+N + DI S +
Sbjct: 106 ---SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDT 160
Query: 216 LSLD---------IGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDL 255
LSL+ + L L + LSKN++S D+ A + GLK+L ++L
Sbjct: 161 LSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLEL 207
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 22/169 (13%)
Query: 97 IIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP 156
IIAN S I +++ I L N+ L L GNKLT P+ L+ L L L NK+
Sbjct: 49 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPL--ANLKNLGWLFLDENKVKDL-- 103
Query: 157 DELCHLARLAEFVILGNKPSG-SIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGP 215
L L + L + +G S + L +L L SLYLG+N + DI S +
Sbjct: 104 ---SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDT 158
Query: 216 LSLD---------IGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDL 255
LSL+ + L L + LSKN++S D+ A + GLK+L ++L
Sbjct: 159 LSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLEL 205
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 22/169 (13%)
Query: 97 IIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP 156
IIAN S I +++ I L N+ L L GNKLT P+ L+ L L L NK+
Sbjct: 49 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPL--ANLKNLGWLFLDENKVKDL-- 103
Query: 157 DELCHLARLAEFVILGNKPSG-SIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGP 215
L L + L + +G S + L +L L SLYLG+N + DI S +
Sbjct: 104 ---SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDT 158
Query: 216 LSLDIGNLKVLV---------RINLSKNNLSGDIPATIVGLKDLQFMDL 255
LSL+ ++ +V + LSKN++S D+ A + GLK+L ++L
Sbjct: 159 LSLEDNQIRRIVPLARLTKLQNLYLSKNHIS-DLRA-LRGLKNLDVLEL 205
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 251 QFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEG 310
Q + L N+ P +F LT L LNL+ N+++ +KL L L L N+L+
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK- 101
Query: 311 EIPSG 315
IP G
Sbjct: 102 SIPMG 106
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 83/169 (49%), Gaps = 22/169 (13%)
Query: 97 IIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP 156
IIAN S I +++ I L N+ L L GNKLT P+ L+ L L L NK+
Sbjct: 46 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPL--ANLKNLGWLFLDENKVKDL-- 100
Query: 157 DELCHLARLAEFVILGNKPSG-SIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGP 215
L L + L + +G S + L +L L SLYLG+N + DI S +
Sbjct: 101 ---SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDT 155
Query: 216 LSL------DIGNLKVLVRIN---LSKNNLSGDIPATIVGLKDLQFMDL 255
LSL DI L L ++ LSKN++S D+ A + GLK+L ++L
Sbjct: 156 LSLEDNQISDIVPLACLTKLQNLYLSKNHIS-DLRA-LCGLKNLDVLEL 202
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 240 IPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSM-EKLVYL 298
+PA I D Q + L N+ P +F L +L+ L + NK++ IPT + +KL L
Sbjct: 27 VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQL 83
Query: 299 RELNLSFNKLEGEIPSGG 316
+L+L+ N L+ IP G
Sbjct: 84 TQLDLNDNHLKS-IPRGA 100
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 69/161 (42%), Gaps = 31/161 (19%)
Query: 179 IPSCLSNLTSLRSLYLGSNSL--KDILFF------DFSSNFLVGPLSLDIGNLKVLVRIN 230
+ + LT LR Y G++ ++I +++ + L D NLK L +
Sbjct: 198 VSKAVXRLTKLRQFYXGNSPFVAENICEAWENENSEYAQQYKTEDLKWD--NLKDLTDVE 255
Query: 231 LSKNNLSGDIPATIVGLKDLQFMDLAYNR--------------SEGPIPELFGDLTSLEV 276
+ +P + L + Q +++A NR ++ P+ E +++
Sbjct: 256 VYNCPNLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAPVGE------KIQI 309
Query: 277 LNLSKNKISG-PIPTSMEKLVYLRELNLSFNKLEGEIPSGG 316
+ + N + P+ TS++K L L +N+LEG++P+ G
Sbjct: 310 IYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFG 350
>pdb|3G5Y|A Chain A, Antibodies Specifically Targeting A Locally Misfolded
Region Of Tumor Associated Egfr
Length = 213
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 15/116 (12%)
Query: 222 NLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSK 281
NL+ V S + D TI L F+D Y G P FG TSLE+
Sbjct: 53 NLEDGVPGRFSGSGSGADYSLTISSLSSEDFVDY-YCVQYGQFPWTFGGGTSLEIKRADA 111
Query: 282 NKISGPIPTSMEKLV-------------YLRELNLSFNKLEGEIPSGGIFTSFIAE 324
P S E+L Y +++N+ + K++G G+ S+ +
Sbjct: 112 APTVSIFPPSTEQLTSGGASVVCFLNNFYPKDINVKW-KIDGSERQNGVLNSWTDQ 166
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 120 LTLEGNKLTGPIPITFGRLQKLQGLDLAFNKL----VGSFPDELCHLARLAEFVILGNKP 175
L L N++T P F RL +L LDL N+L G F D+L L +L+ L +
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF-DKLTQLTQLS----LNDNQ 89
Query: 176 SGSIPS-CLSNLTSLRSLYLGSN----SLKDILFF 205
SIP NL SL ++L +N + DIL+
Sbjct: 90 LKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYL 124
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 251 QFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEG 310
Q + L NR P +F LT L L+L N+++ +KL L +L+L+ N+L+
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK- 91
Query: 311 EIPSGG 316
IP G
Sbjct: 92 SIPRGA 97
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 31/214 (14%)
Query: 109 RAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEF 168
RA NL L+ + N + G F L L+ LDL+ N L L+ L
Sbjct: 47 RACANLQVLILKSSRINTIEGD---AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103
Query: 169 VILGN-KPSGSIPSCLSNLTSLRSLYLGS-NSLKDILFFDFSSNFLVGPLSLDIGNLKVL 226
++GN + + S NLT+L++L +G+ + +I DF+ G SL+ +K L
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA-----GLTSLNELEIKAL 158
Query: 227 VRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGD-LTSLEVLNLSKNKIS 285
N +L ++D+ + L + S + E+F D L+S+ L L ++
Sbjct: 159 SLRNYQSQSLK--------SIRDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLA 209
Query: 286 ----GPIPTS-----MEKLVYLREL--NLSFNKL 308
P+P M+KL + + + SFN+L
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 178 SIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLS 237
SIPS L+ +++SL L N + I D + NL+VL+ + N +
Sbjct: 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRA----------CANLQVLILKSSRINTIE 66
Query: 238 GDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKN 282
GD L L+ +DL+ N FG L+SL+ LNL N
Sbjct: 67 GD---AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 31/214 (14%)
Query: 109 RAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEF 168
RA NL L+ + N + G F L L+ LDL+ N L L+ L
Sbjct: 73 RACANLQVLILKSSRINTIEGD---AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 129
Query: 169 VILGN-KPSGSIPSCLSNLTSLRSLYLGS-NSLKDILFFDFSSNFLVGPLSLDIGNLKVL 226
++GN + + S NLT+L++L +G+ + +I DF+ G SL+ +K L
Sbjct: 130 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA-----GLTSLNELEIKAL 184
Query: 227 VRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGD-LTSLEVLNLSKNKIS 285
N +L ++D+ + L + S + E+F D L+S+ L L ++
Sbjct: 185 SLRNYQSQSLK--------SIRDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLA 235
Query: 286 ----GPIPTS-----MEKLVYLREL--NLSFNKL 308
P+P M+KL + + + SFN+L
Sbjct: 236 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 269
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 178 SIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLS 237
SIPS L+ +++SL L N + I D + NL+VL+ + N +
Sbjct: 45 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRA----------CANLQVLILKSSRINTIE 92
Query: 238 GDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKN 282
GD L L+ +DL+ N FG L+SL+ LNL N
Sbjct: 93 GD---AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 120 LTLEGNKLTGPIPITFGRLQKLQGLDLAFNKL----VGSFPDELCHLARLAEFVILGNKP 175
L L N++T P F RL +L LDL N+L G F D+L L +L+ L +
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF-DKLTQLTQLS----LNDNQ 89
Query: 176 SGSIP-SCLSNLTSLRSLYLGSN----SLKDILFF 205
SIP NL SL ++L +N + DIL+
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYL 124
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 60/153 (39%), Gaps = 16/153 (10%)
Query: 175 PSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSL-DIGNLKV-------- 225
P+ S SC NLT L +L SN+L I F+ L+ L L D L+V
Sbjct: 47 PAASFQSC-RNLTIL---WLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRG 102
Query: 226 ---LVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKN 282
L ++L + L P GL LQ++ L N + F DL +L L L N
Sbjct: 103 LGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGN 162
Query: 283 KISGPIPTSMEKLVYLRELNLSFNKLEGEIPSG 315
+I + L L L L N + P
Sbjct: 163 RIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHA 195
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 120 LTLEGNKLTGPIPITFGRLQKLQGLDLAFNKL----VGSFPDELCHLARLAEFVILGNKP 175
L L N++T P F RL +L LDL N+L G F D+L L +L+ L +
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF-DKLTQLTQLS----LNDNQ 97
Query: 176 SGSIP-SCLSNLTSLRSLYLGSN----SLKDILFF 205
SIP NL SL ++L +N + DIL+
Sbjct: 98 LKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYL 132
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 28.9 bits (63), Expect = 5.2, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 163 ARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSN 197
AR E V+ GN + P +L LR+ +LG+N
Sbjct: 30 ARTTELVLTGNNLTSVPPGAFDHLPQLRTAHLGAN 64
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 200 KDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNR 259
K + D S+N + + N+ L+ + LS N L P T GLK L+ + L N
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN- 112
Query: 260 SEGPIPE-LFGDLTSLEVLNLSKNKI 284
+PE F DL++L L + N +
Sbjct: 113 DISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 112 GNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171
G L L L L N+L +P+ L L LD++FN+L L L L E +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
GN+ P L+ L L L +N L ++
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 112 GNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171
G L L L L N+L +P+ L L LD++FN+L L L L E +
Sbjct: 75 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
GN+ P L+ L L L +N+L ++
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLTEL 164
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 112 GNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171
G L L L L N+L +P+ L L LD++FN+L L L L E +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
GN+ P L+ L L L +N L ++
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 112 GNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171
G L L L L N+L +P+ L L LD++FN+L L L L E +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
GN+ P L+ L L L +N+L ++
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 112 GNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171
G L L L L N+L +P+ L L LD++FN+L L L L E +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
GN+ P L+ L L L +N+L ++
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 112 GNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171
G L L L L N+L +P+ L L LD++FN+L L L L E +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
GN+ P L+ L L L +N+L ++
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 112 GNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171
G L L L L N+L +P+ L L LD++FN+L L L L E +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
GN+ P L+ L L L +N L ++
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 112 GNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171
G L L L L N+L +P+ L L LD++FN+L L L L E +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
GN+ P L+ L L L +N+L ++
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 112 GNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171
G L L L L N+L +P+ L L LD++FN+L L L L E +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
GN+ P L+ L L L +N L ++
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 112 GNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171
G L L L L N+L +P+ L L LD++FN+L L L L E +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI 202
GN+ P L+ L L L +N L ++
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLTEL 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,910,577
Number of Sequences: 62578
Number of extensions: 415940
Number of successful extensions: 1424
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 831
Number of HSP's gapped (non-prelim): 351
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)