Query 042802
Match_columns 424
No_of_seqs 357 out of 4686
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 09:38:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.4E-43 9.5E-48 373.4 29.4 342 2-344 249-620 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.4E-40 1.4E-44 349.2 26.4 329 1-337 224-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 6.3E-35 1.4E-39 270.1 3.4 327 4-336 116-456 (873)
4 KOG4194 Membrane glycoprotein 100.0 9.5E-34 2.1E-38 262.3 4.2 308 16-331 81-428 (873)
5 KOG0444 Cytoskeletal regulator 100.0 4.7E-31 1E-35 246.4 -4.0 317 4-333 46-376 (1255)
6 KOG0472 Leucine-rich repeat pr 100.0 3.1E-31 6.8E-36 235.6 -6.0 313 4-332 105-541 (565)
7 KOG0444 Cytoskeletal regulator 99.9 8.3E-29 1.8E-33 231.5 -0.8 290 7-309 72-375 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 5.7E-29 1.2E-33 221.3 -4.9 104 203-309 438-541 (565)
9 KOG0618 Serine/threonine phosp 99.9 1.9E-26 4.1E-31 224.6 -0.3 211 116-332 242-489 (1081)
10 PLN03210 Resistant to P. syrin 99.9 4.7E-23 1E-27 220.8 23.5 297 15-332 591-906 (1153)
11 PLN03210 Resistant to P. syrin 99.9 4E-22 8.6E-27 213.7 21.4 312 6-336 551-886 (1153)
12 PRK15387 E3 ubiquitin-protein 99.9 1.4E-21 3E-26 195.9 16.2 256 13-314 201-463 (788)
13 KOG4237 Extracellular matrix p 99.9 5.3E-24 1.2E-28 189.4 -2.4 287 4-311 60-361 (498)
14 PRK15387 E3 ubiquitin-protein 99.8 2.2E-20 4.7E-25 187.3 15.8 245 4-293 215-466 (788)
15 PRK15370 E3 ubiquitin-protein 99.8 1.3E-20 2.8E-25 190.0 13.7 247 13-309 178-428 (754)
16 KOG0618 Serine/threonine phosp 99.8 8.1E-22 1.8E-26 192.6 -0.5 280 3-308 170-488 (1081)
17 KOG4237 Extracellular matrix p 99.8 4.8E-22 1E-26 177.1 -2.0 285 42-335 51-362 (498)
18 PRK15370 E3 ubiquitin-protein 99.8 4E-20 8.6E-25 186.5 11.1 233 4-285 192-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 2.3E-21 5E-26 181.1 1.4 280 17-307 2-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 8.9E-20 1.9E-24 170.4 4.3 272 4-284 14-319 (319)
21 KOG0617 Ras suppressor protein 99.7 9.3E-20 2E-24 144.8 -2.8 158 61-237 28-186 (264)
22 KOG0617 Ras suppressor protein 99.7 7.4E-20 1.6E-24 145.3 -4.6 156 10-176 30-186 (264)
23 PLN03150 hypothetical protein; 99.6 1.5E-15 3.2E-20 152.8 11.4 118 225-344 419-538 (623)
24 PLN03150 hypothetical protein; 99.4 2.5E-12 5.4E-17 129.6 13.1 112 202-313 420-532 (623)
25 KOG0532 Leucine-rich repeat (L 99.4 2.2E-14 4.7E-19 134.2 -3.2 168 96-285 80-247 (722)
26 KOG0532 Leucine-rich repeat (L 99.4 6.8E-14 1.5E-18 131.0 -1.4 191 39-258 77-270 (722)
27 COG4886 Leucine-rich repeat (L 99.3 2.8E-12 6.1E-17 123.4 8.1 199 70-291 97-296 (394)
28 COG4886 Leucine-rich repeat (L 99.3 3.3E-12 7.1E-17 122.9 8.5 200 41-268 97-297 (394)
29 KOG1909 Ran GTPase-activating 99.3 3.2E-13 6.9E-18 119.6 -1.3 257 8-285 25-311 (382)
30 KOG3207 Beta-tubulin folding c 99.3 7.3E-13 1.6E-17 120.5 0.4 218 10-261 118-339 (505)
31 PF14580 LRR_9: Leucine-rich r 99.2 2.8E-11 6.2E-16 100.5 5.2 107 11-128 17-126 (175)
32 KOG1909 Ran GTPase-activating 99.2 2.8E-12 6.1E-17 113.6 -1.6 40 112-151 89-132 (382)
33 KOG1259 Nischarin, modulator o 99.1 2.3E-11 5E-16 105.8 1.6 131 163-312 284-415 (490)
34 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.4E-15 96.9 4.8 82 221-303 61-147 (175)
35 KOG4658 Apoptotic ATPase [Sign 99.1 1.1E-10 2.4E-15 120.4 5.9 276 13-310 523-808 (889)
36 KOG1259 Nischarin, modulator o 99.1 2.4E-11 5.3E-16 105.6 0.4 224 12-263 181-414 (490)
37 KOG3207 Beta-tubulin folding c 99.0 5E-11 1.1E-15 108.7 1.5 85 224-309 246-339 (505)
38 KOG4658 Apoptotic ATPase [Sign 99.0 2.5E-10 5.4E-15 117.8 5.5 256 11-286 543-808 (889)
39 KOG0531 Protein phosphatase 1, 99.0 6.8E-11 1.5E-15 114.1 -1.5 128 36-176 71-199 (414)
40 KOG0531 Protein phosphatase 1, 98.9 1.2E-10 2.6E-15 112.4 -1.0 174 11-201 70-246 (414)
41 PF13855 LRR_8: Leucine rich r 98.9 1.8E-09 3.9E-14 73.7 3.8 59 225-283 2-60 (61)
42 PF13855 LRR_8: Leucine rich r 98.8 3.2E-09 6.9E-14 72.5 3.6 59 92-150 2-60 (61)
43 KOG1859 Leucine-rich repeat pr 98.6 2.2E-09 4.7E-14 104.0 -3.4 169 156-334 102-294 (1096)
44 KOG2982 Uncharacterized conser 98.6 6.2E-09 1.4E-13 90.7 -0.4 226 68-304 47-287 (418)
45 KOG1859 Leucine-rich repeat pr 98.5 9.3E-10 2E-14 106.5 -8.6 103 92-201 165-268 (1096)
46 KOG2982 Uncharacterized conser 98.5 8.4E-09 1.8E-13 90.0 -3.2 84 65-149 70-156 (418)
47 COG5238 RNA1 Ran GTPase-activa 98.4 1E-07 2.2E-12 82.3 2.7 168 135-311 88-287 (388)
48 KOG2120 SCF ubiquitin ligase, 98.4 5.3E-09 1.1E-13 91.2 -5.3 177 116-305 186-372 (419)
49 KOG4579 Leucine-rich repeat (L 98.4 2E-08 4.4E-13 77.6 -2.9 110 37-152 27-136 (177)
50 COG5238 RNA1 Ran GTPase-activa 98.4 1.3E-07 2.9E-12 81.5 1.3 145 8-152 25-198 (388)
51 KOG2120 SCF ubiquitin ligase, 98.3 2E-08 4.3E-13 87.7 -5.6 180 38-237 186-376 (419)
52 KOG4579 Leucine-rich repeat (L 98.1 5.9E-07 1.3E-11 69.7 -0.3 106 14-128 28-136 (177)
53 PRK15386 type III secretion pr 98.1 1.3E-05 2.9E-10 75.1 8.5 54 36-101 51-104 (426)
54 PF12799 LRR_4: Leucine Rich r 98.0 4.5E-06 9.8E-11 52.2 3.0 39 13-52 1-39 (44)
55 KOG1644 U2-associated snRNP A' 98.0 9.4E-06 2E-10 67.4 5.3 104 141-258 44-150 (233)
56 PRK15386 type III secretion pr 98.0 2.7E-05 5.9E-10 73.0 9.0 52 92-149 53-104 (426)
57 KOG1644 U2-associated snRNP A' 97.9 1.9E-05 4E-10 65.7 5.7 124 16-149 22-150 (233)
58 PF12799 LRR_4: Leucine Rich r 97.9 2.1E-05 4.5E-10 49.2 3.6 36 249-285 2-37 (44)
59 PF13306 LRR_5: Leucine rich r 97.7 0.0001 2.2E-09 58.6 6.2 60 8-74 7-66 (129)
60 KOG3665 ZYG-1-like serine/thre 97.7 2.4E-05 5.2E-10 79.4 2.7 150 13-169 122-281 (699)
61 KOG3665 ZYG-1-like serine/thre 97.6 3E-05 6.5E-10 78.7 3.2 134 66-201 122-264 (699)
62 PF13306 LRR_5: Leucine rich r 97.5 0.00023 5E-09 56.5 6.4 124 30-165 5-128 (129)
63 KOG2739 Leucine-rich acidic nu 97.2 0.00018 3.9E-09 62.4 2.2 61 35-103 41-103 (260)
64 KOG2123 Uncharacterized conser 97.2 2.5E-05 5.4E-10 68.1 -3.2 100 11-121 17-123 (388)
65 KOG2739 Leucine-rich acidic nu 97.1 0.00027 5.9E-09 61.3 2.6 84 220-305 61-152 (260)
66 KOG1947 Leucine rich repeat pr 96.5 0.00031 6.7E-09 69.4 -2.3 36 250-285 403-440 (482)
67 KOG2123 Uncharacterized conser 96.5 0.0002 4.4E-09 62.6 -3.2 83 36-128 18-101 (388)
68 KOG4341 F-box protein containi 96.2 0.00018 3.9E-09 66.4 -5.3 62 64-125 162-226 (483)
69 PF00560 LRR_1: Leucine Rich R 95.7 0.0058 1.3E-07 31.7 1.2 21 14-35 1-21 (22)
70 KOG1947 Leucine rich repeat pr 95.4 0.0036 7.7E-08 61.9 -0.5 134 11-146 186-328 (482)
71 PF00560 LRR_1: Leucine Rich R 95.1 0.013 2.7E-07 30.4 1.3 12 250-261 2-13 (22)
72 KOG0473 Leucine-rich repeat pr 94.5 0.002 4.3E-08 55.1 -4.3 88 61-152 37-124 (326)
73 KOG4308 LRR-containing protein 94.4 0.00021 4.6E-09 69.5 -11.9 15 187-201 262-276 (478)
74 PF13504 LRR_7: Leucine rich r 94.2 0.032 6.9E-07 26.8 1.4 11 39-49 3-13 (17)
75 KOG4308 LRR-containing protein 93.3 0.00065 1.4E-08 66.2 -10.7 36 93-128 89-128 (478)
76 PF02439 Adeno_E3_CR2: Adenovi 92.4 0.3 6.4E-06 28.7 3.6 19 362-380 7-25 (38)
77 KOG0473 Leucine-rich repeat pr 91.2 0.0096 2.1E-07 51.0 -4.8 89 31-128 36-124 (326)
78 KOG3864 Uncharacterized conser 89.8 0.048 1E-06 45.9 -1.8 82 38-124 102-185 (221)
79 KOG4341 F-box protein containi 89.8 0.12 2.7E-06 48.3 0.6 210 11-235 214-437 (483)
80 smart00370 LRR Leucine-rich re 89.3 0.31 6.7E-06 26.2 1.8 17 37-53 2-18 (26)
81 smart00369 LRR_TYP Leucine-ric 89.3 0.31 6.7E-06 26.2 1.8 17 37-53 2-18 (26)
82 PF13516 LRR_6: Leucine Rich r 88.9 0.067 1.4E-06 28.2 -1.0 18 13-30 2-19 (24)
83 PF04478 Mid2: Mid2 like cell 88.8 0.13 2.8E-06 41.0 0.0 24 357-380 48-71 (154)
84 KOG3864 Uncharacterized conser 88.3 0.078 1.7E-06 44.6 -1.5 91 6-101 94-186 (221)
85 smart00369 LRR_TYP Leucine-ric 86.9 0.64 1.4E-05 24.9 2.1 14 272-285 2-15 (26)
86 smart00370 LRR Leucine-rich re 86.9 0.64 1.4E-05 24.9 2.1 14 272-285 2-15 (26)
87 PF01102 Glycophorin_A: Glycop 86.0 0.96 2.1E-05 35.0 3.4 22 358-379 64-85 (122)
88 PF08693 SKG6: Transmembrane a 85.9 0.28 6.2E-06 29.3 0.4 12 362-373 16-27 (40)
89 PF14575 EphA2_TM: Ephrin type 82.9 1.2 2.7E-05 31.2 2.6 18 406-423 55-72 (75)
90 smart00365 LRR_SD22 Leucine-ri 80.0 1.5 3.3E-05 23.6 1.7 16 187-202 2-17 (26)
91 PTZ00382 Variant-specific surf 75.8 1.4 3E-05 32.7 1.0 11 358-368 66-76 (96)
92 KOG4242 Predicted myosin-I-bin 73.9 37 0.00081 32.9 10.0 13 38-50 166-178 (553)
93 smart00364 LRR_BAC Leucine-ric 72.6 2.5 5.5E-05 22.7 1.3 16 38-53 3-18 (26)
94 smart00368 LRR_RI Leucine rich 66.9 4.5 9.8E-05 22.1 1.6 14 13-26 2-15 (28)
95 KOG1187 Serine/threonine prote 66.6 3.5 7.5E-05 39.1 1.8 21 404-424 61-81 (361)
96 PF01034 Syndecan: Syndecan do 65.5 2.4 5.1E-05 28.4 0.3 8 362-369 13-20 (64)
97 PF08114 PMP1_2: ATPase proteo 61.4 15 0.00034 21.9 3.1 6 379-384 29-34 (43)
98 PF14979 TMEM52: Transmembrane 58.0 17 0.00036 28.9 3.8 31 359-389 20-50 (154)
99 KOG3763 mRNA export factor TAP 56.9 5.9 0.00013 38.9 1.4 39 35-76 216-254 (585)
100 PF01299 Lamp: Lysosome-associ 55.6 7.7 0.00017 35.8 2.0 17 361-377 273-289 (306)
101 PF05454 DAG1: Dystroglycan (D 54.5 4.1 8.9E-05 36.9 0.0 8 408-415 194-201 (290)
102 KOG3763 mRNA export factor TAP 52.4 7.1 0.00015 38.4 1.2 38 247-286 243-284 (585)
103 PF12877 DUF3827: Domain of un 51.8 33 0.00071 34.5 5.5 10 405-414 320-329 (684)
104 PF08374 Protocadherin: Protoc 51.6 18 0.00039 30.9 3.3 20 358-377 38-57 (221)
105 PF10873 DUF2668: Protein of u 43.6 30 0.00065 27.4 3.1 24 357-380 60-83 (155)
106 PF14610 DUF4448: Protein of u 42.9 12 0.00026 31.7 1.1 17 360-376 159-175 (189)
107 PF05393 Hum_adeno_E3A: Human 40.7 42 0.0009 24.1 3.2 8 388-395 59-66 (94)
108 PHA03164 hypothetical protein; 40.7 36 0.00078 23.5 2.8 22 359-380 58-79 (88)
109 TIGR00864 PCC polycystin catio 40.3 20 0.00043 42.6 2.5 33 254-286 1-33 (2740)
110 smart00367 LRR_CC Leucine-rich 40.3 20 0.00043 18.9 1.3 11 13-23 2-12 (26)
111 PF11044 TMEMspv1-c74-12: Plec 39.3 49 0.0011 20.2 2.9 17 371-387 17-33 (49)
112 PF03302 VSP: Giardia variant- 39.3 22 0.00047 34.2 2.3 15 357-371 366-380 (397)
113 PF05568 ASFV_J13L: African sw 36.4 25 0.00055 27.7 1.8 7 340-346 14-20 (189)
114 PF15345 TMEM51: Transmembrane 31.0 55 0.0012 28.4 3.1 6 409-414 126-131 (233)
115 TIGR00864 PCC polycystin catio 29.5 39 0.00084 40.4 2.5 33 230-262 1-33 (2740)
116 TIGR02976 phageshock_pspB phag 29.5 1E+02 0.0022 21.7 3.7 14 364-377 7-20 (75)
117 PF06667 PspB: Phage shock pro 28.8 1.1E+02 0.0024 21.5 3.8 10 368-377 11-20 (75)
118 PRK09458 pspB phage shock prot 25.0 1.3E+02 0.0028 21.1 3.5 15 363-377 6-20 (75)
119 PF07095 IgaA: Intracellular g 22.4 1.7E+02 0.0037 30.0 5.2 18 401-419 39-56 (705)
120 PF15069 FAM163: FAM163 family 21.7 2.1E+02 0.0045 22.9 4.5 23 358-380 6-28 (143)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.4e-43 Score=373.42 Aligned_cols=342 Identities=32% Similarity=0.499 Sum_probs=252.1
Q ss_pred eecCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCC-CCcc------------------cccccc
Q 042802 2 FGTIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSS-TSKL------------------SFLSSL 62 (424)
Q Consensus 2 ~g~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~------------------~~~~~l 62 (424)
.|.+|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+. |..+ .....+
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 355666666666666666666666666666666666666666666666543 3000 000233
Q ss_pred cCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCC
Q 042802 63 ANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQ 142 (424)
Q Consensus 63 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 142 (424)
..+++|+.|++++|.+.+.+|..++.+ .+|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence 444444555555554444445444444 2455555555555544555555555555555555555555566666666777
Q ss_pred eEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCC----------ceeeeccCCcc
Q 042802 143 GLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD----------ILFFDFSSNFL 212 (424)
Q Consensus 143 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~----------i~~l~l~~n~~ 212 (424)
.|++++|++.+..|..+..++.|+.|++++|.+.+..+..+..+++|+.|++++|.+.+ ++.+++++|.+
T Consensus 408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF 487 (968)
T ss_pred EEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc
Confidence 77777777776677777777777777777777777777777777888888888877542 57899999999
Q ss_pred cccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccc
Q 042802 213 VGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSM 292 (424)
Q Consensus 213 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 292 (424)
.+..|..+.++++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|+|++|++++.+|..+
T Consensus 488 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 567 (968)
T PLN00113 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567 (968)
T ss_pred CCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEcccccCcccCCCCCcccccccccccCCcCCcCCCC-CCCCCCC
Q 042802 293 EKLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGNELLCGLPN-LQVQPCK 344 (424)
Q Consensus 293 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~-~~~~~c~ 344 (424)
..+++|+.+++++|++.|.+|..+.+..+....+.||+.+|+.+. ...++|.
T Consensus 568 ~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~ 620 (968)
T PLN00113 568 GNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCK 620 (968)
T ss_pred hcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCc
Confidence 999999999999999999999998888888899999999998542 2345564
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.4e-40 Score=349.20 Aligned_cols=329 Identities=33% Similarity=0.516 Sum_probs=255.1
Q ss_pred CeecCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCC-CCcccccccccCCccCceeeccCccCC
Q 042802 1 FFGTIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSS-TSKLSFLSSLANCKKLRNINLIGNPLD 79 (424)
Q Consensus 1 ~~g~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~l~~L~~L~l~~n~~~ 79 (424)
++|.+|..++++++|++|++++|.+++..|..++++++|++|++++|.+.+. | ..+.++++|+.|++++|.+.
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p------~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP------PSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc------hhHhhccCcCEEECcCCeec
Confidence 3578999999999999999999999999999999999999999999999765 5 55667777777777777777
Q ss_pred ccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhh
Q 042802 80 GFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDEL 159 (424)
Q Consensus 80 ~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l 159 (424)
+.+|..+..+ ++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+..|..+
T Consensus 298 ~~~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 298 GEIPELVIQL-QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred cCCChhHcCC-CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 7777777666 367777777777766666666677777777777776666666666666666666666666655555444
Q ss_pred c------------------------CCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCC-----------cee
Q 042802 160 C------------------------HLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD-----------ILF 204 (424)
Q Consensus 160 ~------------------------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-----------i~~ 204 (424)
. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++ ++.
T Consensus 377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 456 (968)
T PLN00113 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456 (968)
T ss_pred hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcE
Confidence 4 44555555555555555555555555566666665554432 356
Q ss_pred eeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCC
Q 042802 205 FDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKI 284 (424)
Q Consensus 205 l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 284 (424)
+++++|.+.+.+|..+ ..++|+.|++++|.+++..|..+..+++|+.|++++|++.+.+|..+..+++|++|+|++|.+
T Consensus 457 L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 535 (968)
T PLN00113 457 LSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535 (968)
T ss_pred EECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcc
Confidence 6666666666666544 346788888888888888888899999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCCCEEEcccccCcccCCCC-CcccccccccccCCcCCcCCCC
Q 042802 285 SGPIPTSMEKLVYLRELNLSFNKLEGEIPSG-GIFTSFIAESFMGNELLCGLPN 337 (424)
Q Consensus 285 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 337 (424)
++.+|..+..+++|+.|++++|++++.+|.. ..+..+..+++.+|+..+.+|.
T Consensus 536 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 536 SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 9999999999999999999999999999865 5567889999999998776664
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-35 Score=270.10 Aligned_cols=327 Identities=24% Similarity=0.262 Sum_probs=236.0
Q ss_pred cCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCC
Q 042802 4 TIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLP 83 (424)
Q Consensus 4 ~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 83 (424)
.||...+...+|+.|+|.+|.|+..-.+.++.++.||.|||+.|.++.+|. .+|..-.++++|+|++|.++..-.
T Consensus 116 ~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~-----~sfp~~~ni~~L~La~N~It~l~~ 190 (873)
T KOG4194|consen 116 RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPK-----PSFPAKVNIKKLNLASNRITTLET 190 (873)
T ss_pred hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccC-----CCCCCCCCceEEeecccccccccc
Confidence 345555555556666666666665555556666666666666666666643 445555567777777777776556
Q ss_pred hhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCc
Q 042802 84 SSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLA 163 (424)
Q Consensus 84 ~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 163 (424)
..|..+. +|.+|.|++|.++...+..|.++++|+.|+|..|+|....-.+|.++++|+.|.|..|.+.......|..+.
T Consensus 191 ~~F~~ln-sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~ 269 (873)
T KOG4194|consen 191 GHFDSLN-SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLE 269 (873)
T ss_pred ccccccc-hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeec
Confidence 6666664 777777777777766666777777777777777777644355677777777777777777766666777777
Q ss_pred ccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCc-----------eeeeccCCcccccccccccccCcccEEECc
Q 042802 164 RLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI-----------LFFDFSSNFLVGPLSLDIGNLKVLVRINLS 232 (424)
Q Consensus 164 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i-----------~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~ 232 (424)
++++|+|..|++...-..++.+++.|+.|++++|.+..+ +.|+++.|++...-+..|..+..|+.|.|+
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence 777888877777766667777788888888888876553 677888888887777788888888888888
Q ss_pred cCcccccCchhhccCcCccEeeccCccccccch---hhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCc
Q 042802 233 KNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIP---ELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLE 309 (424)
Q Consensus 233 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 309 (424)
+|.++...-..|..+++|++|||+.|.+.+.+. ..|.+++.|+.|++.||++....-.+|..+..|+.||+.+|.+.
T Consensus 350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce
Confidence 888876666678888888888888888876554 45777888899999999888655578888999999999999887
Q ss_pred ccCCCCCcccccccccccCCcCCcCCC
Q 042802 310 GEIPSGGIFTSFIAESFMGNELLCGLP 336 (424)
Q Consensus 310 ~~~p~~~~~~~l~~~~~~~n~~lc~~~ 336 (424)
..-|....-..+..+.+.....+|++.
T Consensus 430 SIq~nAFe~m~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 430 SIQPNAFEPMELKELVMNSSSFLCDCQ 456 (873)
T ss_pred eecccccccchhhhhhhcccceEEecc
Confidence 555544333366777777777888764
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.98 E-value=9.5e-34 Score=262.31 Aligned_cols=308 Identities=22% Similarity=0.220 Sum_probs=185.0
Q ss_pred CEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccce
Q 042802 16 TVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKT 95 (424)
Q Consensus 16 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~ 95 (424)
+.||+++|.+....+..|.++++|+.+++.+|.++.+| ...+...+|+.|+|.+|.+...-.+++..++ .|+.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP------~f~~~sghl~~L~L~~N~I~sv~se~L~~l~-alrs 153 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIP------RFGHESGHLEKLDLRHNLISSVTSEELSALP-ALRS 153 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcc------cccccccceeEEeeeccccccccHHHHHhHh-hhhh
Confidence 45777777777666666777777777777777777766 3333334466666666666655555555553 5666
Q ss_pred eEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcC
Q 042802 96 LIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKP 175 (424)
Q Consensus 96 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 175 (424)
|||+.|.++......|..-.++++|+|++|+|+...-..|..+.+|.+|.|+.|+++...+..|.++++|+.|+|..|.+
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 66666665544334444445566666666666544445555555666666666665544444555555566555555554
Q ss_pred c------------------------cCCCccCCCCCCCCEEEccCCCCCC-----------ceeeeccCCcccccccccc
Q 042802 176 S------------------------GSIPSCLSNLTSLRSLYLGSNSLKD-----------ILFFDFSSNFLVGPLSLDI 220 (424)
Q Consensus 176 ~------------------------~~~~~~l~~l~~L~~L~l~~n~l~~-----------i~~l~l~~n~~~~~~~~~l 220 (424)
. ......|..+.++++|++..|+++. ++.|+++.|.+....++.+
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 4 3333444555555555555554433 2566666666666666666
Q ss_pred cccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCc---ccccCCCC
Q 042802 221 GNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIP---TSMEKLVY 297 (424)
Q Consensus 221 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~ 297 (424)
...++|++|+|+.|+++...+..|..+..|++|+|++|+++.....+|..+++|+.|||++|.++..+. ..|..+++
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS 393 (873)
T ss_pred hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence 666666666666666665556666666666666666666665555666666777777777777665443 23556677
Q ss_pred CCEEEcccccCcccCCCC--CcccccccccccCCcC
Q 042802 298 LRELNLSFNKLEGEIPSG--GIFTSFIAESFMGNEL 331 (424)
Q Consensus 298 L~~L~l~~n~l~~~~p~~--~~~~~l~~~~~~~n~~ 331 (424)
|+.|++.+|++. .+|.. ..+..++.+++.+|+.
T Consensus 394 LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 394 LRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhheeecCceee-ecchhhhccCcccceecCCCCcc
Confidence 777777777765 34432 3455666666666653
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=4.7e-31 Score=246.43 Aligned_cols=317 Identities=24% Similarity=0.320 Sum_probs=196.1
Q ss_pred cCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCC--CCcccccccccCCccCceeeccCccCCcc
Q 042802 4 TIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSS--TSKLSFLSSLANCKKLRNINLIGNPLDGF 81 (424)
Q Consensus 4 ~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 81 (424)
.+|++++.+.+|+.|.+++|++. .+-..++.++.|+.+++.+|++... | ..+-.+..|++|||++|+++ .
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP------~diF~l~dLt~lDLShNqL~-E 117 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIP------TDIFRLKDLTILDLSHNQLR-E 117 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCC------chhcccccceeeecchhhhh-h
Confidence 46788888888888888888776 3334567778888888888877644 5 56777888889999999888 7
Q ss_pred CChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcC
Q 042802 82 LPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCH 161 (424)
Q Consensus 82 ~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 161 (424)
.|..+... +++..|+|++|++..+....|.++..|-.|||++|++. .+|+.+..+..|++|+|++|.+...--..+.+
T Consensus 118 vP~~LE~A-Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs 195 (1255)
T KOG0444|consen 118 VPTNLEYA-KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS 195 (1255)
T ss_pred cchhhhhh-cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc
Confidence 88888776 58888999988886555556678888888899998888 67777888888888888888765322223334
Q ss_pred CcccceEeccCCcCc-cCCCccCCCCCCCCEEEccCCCCCCc----------eeeeccCCcccccccccccccCcccEEE
Q 042802 162 LARLAEFVILGNKPS-GSIPSCLSNLTSLRSLYLGSNSLKDI----------LFFDFSSNFLVGPLSLDIGNLKVLVRIN 230 (424)
Q Consensus 162 l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~i----------~~l~l~~n~~~~~~~~~l~~l~~L~~L~ 230 (424)
+++|+.|.+++.+-+ ..+|..+..+.+|..++++.|.++.+ +.+++++|.++.. ......-.+|++|+
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLN 274 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLN 274 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhc
Confidence 444444554443322 23444444455555555555544331 3334444433321 11122223455555
Q ss_pred CccCcccccCchhhccCcCccEeeccCcccc-ccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCc
Q 042802 231 LSKNNLSGDIPATIVGLKDLQFMDLAYNRSE-GPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLE 309 (424)
Q Consensus 231 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 309 (424)
+++|+++ .+|+.++.++.|+.|.+.+|+++ ..+|..++.+.+|+.+..++|.+. .+|..++.+..|+.|.++.|++.
T Consensus 275 lSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 275 LSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred cccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee
Confidence 5555555 55555555555555555555543 124555555555666555555554 55666666666666666666665
Q ss_pred ccCCCCCcccccccccccCCcCCc
Q 042802 310 GEIPSGGIFTSFIAESFMGNELLC 333 (424)
Q Consensus 310 ~~~p~~~~~~~l~~~~~~~n~~lc 333 (424)
........++.+..+++..||.+-
T Consensus 353 TLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 353 TLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred echhhhhhcCCcceeeccCCcCcc
Confidence 322222445556666666666544
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=3.1e-31 Score=235.63 Aligned_cols=313 Identities=32% Similarity=0.443 Sum_probs=180.6
Q ss_pred cCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCc---
Q 042802 4 TIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDG--- 80 (424)
Q Consensus 4 ~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~--- 80 (424)
.+|.+++.+.+|+.++.++|.+. ..|+.++.+-.|+.++..+|++++.| ..+.++.+|..+++.+|.++.
T Consensus 105 ~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp------~~~~~~~~l~~l~~~~n~l~~l~~ 177 (565)
T KOG0472|consen 105 ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSLP------EDMVNLSKLSKLDLEGNKLKALPE 177 (565)
T ss_pred hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccccCc------hHHHHHHHHHHhhccccchhhCCH
Confidence 35555666666666666666555 34445555555555665556555555 334444444444444444442
Q ss_pred -------------------cCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccC-CCCC
Q 042802 81 -------------------FLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFG-RLQK 140 (424)
Q Consensus 81 -------------------~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~ 140 (424)
.+|+.++.+ .+|.-|++..|++. ..| .|..++.|..|.++.|++. .+|.... .+.+
T Consensus 178 ~~i~m~~L~~ld~~~N~L~tlP~~lg~l-~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~ 253 (565)
T KOG0472|consen 178 NHIAMKRLKHLDCNSNLLETLPPELGGL-ESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNS 253 (565)
T ss_pred HHHHHHHHHhcccchhhhhcCChhhcch-hhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhccccc
Confidence 344444444 24444444444442 223 3444444444444444444 3443333 5666
Q ss_pred CCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCc------------------
Q 042802 141 LQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI------------------ 202 (424)
Q Consensus 141 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i------------------ 202 (424)
+..||+++|++. ..|+.++.+.+|+.|++++|.++ .+|..++++ .|+.|.+.+|.+.++
T Consensus 254 l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs 330 (565)
T KOG0472|consen 254 LLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS 330 (565)
T ss_pred ceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence 667777777766 66777777777777777777776 345556666 777777777655443
Q ss_pred ------------------------------------------------------------eeeeccCCcccc--------
Q 042802 203 ------------------------------------------------------------LFFDFSSNFLVG-------- 214 (424)
Q Consensus 203 ------------------------------------------------------------~~l~l~~n~~~~-------- 214 (424)
...+++.|++..
T Consensus 331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~l 410 (565)
T KOG0472|consen 331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVEL 410 (565)
T ss_pred hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHH
Confidence 344555555442
Q ss_pred ---------------cccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEEC
Q 042802 215 ---------------PLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNL 279 (424)
Q Consensus 215 ---------------~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L 279 (424)
.+|..++.+++|..|++++|.+- .+|..++.+..|+.|+++.|++. .+|..+..+..++.+-.
T Consensus 411 kelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtlla 488 (565)
T KOG0472|consen 411 KELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLA 488 (565)
T ss_pred HHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHh
Confidence 23333444555555555555444 45555555555555555555554 44544444444444444
Q ss_pred cCCCCCCCCcccccCCCCCCEEEcccccCcccCCCCCcccccccccccCCcCC
Q 042802 280 SKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGNELL 332 (424)
Q Consensus 280 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~l 332 (424)
++|++....++.+.++.+|..||+.+|.+....|..+.+.++..+.+.|||+-
T Consensus 489 s~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 489 SNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 44555544455588889999999999999866667788999999999999854
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=8.3e-29 Score=231.51 Aligned_cols=290 Identities=26% Similarity=0.337 Sum_probs=239.6
Q ss_pred hhhhcCCCCCEEeccCCcccc-cCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChh
Q 042802 7 SSITNASKLTVLELGGNTFSG-FIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSS 85 (424)
Q Consensus 7 ~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 85 (424)
-+++.++.|+.+++..|++.. -+|..+-.+..|..|||+.|++.+.| ..+..-+++-+|+|++|+|. .+|..
T Consensus 72 GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP------~~LE~AKn~iVLNLS~N~Ie-tIPn~ 144 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVP------TNLEYAKNSIVLNLSYNNIE-TIPNS 144 (1255)
T ss_pred hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcc------hhhhhhcCcEEEEcccCccc-cCCch
Confidence 456678888888888888752 35666778888999999999998888 67888888888999999888 56654
Q ss_pred H-HhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCccc-ccCChhhcCCc
Q 042802 86 I-GNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLV-GSFPDELCHLA 163 (424)
Q Consensus 86 ~-~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~-~~~~~~l~~l~ 163 (424)
+ .++ ..|-.|||++|.+. ..|..+..+.+|++|+|++|.+...--..+-.+.+|+.|++++.+.+ ..+|.++..+.
T Consensus 145 lfinL-tDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~ 222 (1255)
T KOG0444|consen 145 LFINL-TDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH 222 (1255)
T ss_pred HHHhh-HhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhh
Confidence 4 445 47888899988884 56667788888999999988876443344555667778888876543 45788888888
Q ss_pred ccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCc----------eeeeccCCcccccccccccccCcccEEECcc
Q 042802 164 RLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI----------LFFDFSSNFLVGPLSLDIGNLKVLVRINLSK 233 (424)
Q Consensus 164 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i----------~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 233 (424)
+|..++++.|.+. ..|+.+..+++|+.|++++|.++++ +.+++++|++.. +|..+.+++.|+.|.+.+
T Consensus 223 NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 223 NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred hhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhcc
Confidence 8889999888887 6788888889999999999988774 788888888875 788999999999999999
Q ss_pred Cccc-ccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCc
Q 042802 234 NNLS-GDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLE 309 (424)
Q Consensus 234 n~l~-~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 309 (424)
|++. .-+|..++.+..|+.+..++|.+. ..|+.+..+..|+.|.|++|++. .+|+.+.-++.|+.||+.+|+-.
T Consensus 301 NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 301 NKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred CcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 9875 357889999999999999999997 88999999999999999999998 78999999999999999999776
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=5.7e-29 Score=221.29 Aligned_cols=104 Identities=28% Similarity=0.437 Sum_probs=91.2
Q ss_pred eeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCC
Q 042802 203 LFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKN 282 (424)
Q Consensus 203 ~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n 282 (424)
..+++++|.+ ..+|..++.+..|+.|+++.|+|. .+|..+..+..++++-.++|++....|+.+.++.+|..|||.+|
T Consensus 438 t~L~L~NN~L-n~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN 515 (565)
T KOG0472|consen 438 TFLDLSNNLL-NDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN 515 (565)
T ss_pred eeeecccchh-hhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC
Confidence 4445544433 237888999999999999999998 88998888899999999999999777777999999999999999
Q ss_pred CCCCCCcccccCCCCCCEEEcccccCc
Q 042802 283 KISGPIPTSMEKLVYLRELNLSFNKLE 309 (424)
Q Consensus 283 ~l~~~~~~~l~~l~~L~~L~l~~n~l~ 309 (424)
.+. .+|..++++++|++|++.+|+|.
T Consensus 516 dlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 516 DLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred chh-hCChhhccccceeEEEecCCccC
Confidence 998 78899999999999999999998
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=1.9e-26 Score=224.62 Aligned_cols=211 Identities=27% Similarity=0.366 Sum_probs=165.2
Q ss_pred ccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEcc
Q 042802 116 NLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLG 195 (424)
Q Consensus 116 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 195 (424)
+|++++++.|+++ .+|.+++.+.+|+.++..+|++. .+|..+....+|+.|.+..|.+. .+|+.....+.|++|++.
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 4555555555555 45566666666666666666664 55666666666666666666665 456667778899999999
Q ss_pred CCCCCCc------------------------------------eeeeccCCcccccccccccccCcccEEECccCccccc
Q 042802 196 SNSLKDI------------------------------------LFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGD 239 (424)
Q Consensus 196 ~n~l~~i------------------------------------~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 239 (424)
.|++..+ +.+.+.+|.+.......+.++++|+.|+|++|++...
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 9887663 5677888988888888899999999999999999844
Q ss_pred CchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCccc-CCCCCcc
Q 042802 240 IPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGE-IPSGGIF 318 (424)
Q Consensus 240 ~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~p~~~~~ 318 (424)
....+.+++.|+.|+||+|+++ .+|.....+..|++|...+|++. ..| .+..++.|+.+|++.|+++.. +|....+
T Consensus 399 pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~ 475 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS 475 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence 4446789999999999999998 78899999999999999999998 566 788999999999999999743 4554555
Q ss_pred cccccccccCCcCC
Q 042802 319 TSFIAESFMGNELL 332 (424)
Q Consensus 319 ~~l~~~~~~~n~~l 332 (424)
++++++++.||+++
T Consensus 476 p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 476 PNLKYLDLSGNTRL 489 (1081)
T ss_pred cccceeeccCCccc
Confidence 89999999999963
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=4.7e-23 Score=220.79 Aligned_cols=297 Identities=22% Similarity=0.249 Sum_probs=180.1
Q ss_pred CCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccc
Q 042802 15 LTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLK 94 (424)
Q Consensus 15 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~ 94 (424)
|+.|++.++.++ .+|..| ...+|+.|++.+|.+..++ ..+..+++|+.|+++++.....+|. +..+ ++|+
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~------~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l-~~Le 660 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLW------DGVHSLTGLRNIDLRGSKNLKEIPD-LSMA-TNLE 660 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccc------cccccCCCCCEEECCCCCCcCcCCc-cccC-Cccc
Confidence 445555444443 334333 3455666666666555554 3445566666666665544334443 4444 3666
Q ss_pred eeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCc
Q 042802 95 TLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNK 174 (424)
Q Consensus 95 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 174 (424)
+|++++|.....+|..+.++++|+.|++++|..-..+|..+ ++++|+.|++++|...+.+|.. .++|+.|++++|.
T Consensus 661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~ 736 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA 736 (1153)
T ss_pred EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc
Confidence 66666665555566666666666666666654333455443 5666666666666544444432 3456666666666
Q ss_pred CccCCCccCCCCCCCCEEEccCCC------------------CCCceeeeccCCcccccccccccccCcccEEECccCcc
Q 042802 175 PSGSIPSCLSNLTSLRSLYLGSNS------------------LKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNL 236 (424)
Q Consensus 175 ~~~~~~~~l~~l~~L~~L~l~~n~------------------l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 236 (424)
+. .+|..+ .+++|+.|.+.++. ...++.+++++|...+.+|..++++++|+.|++++|..
T Consensus 737 i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 737 IE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN 814 (1153)
T ss_pred cc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC
Confidence 54 334333 45666666665422 12346677777777777888888888888888888765
Q ss_pred cccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCCC-
Q 042802 237 SGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSG- 315 (424)
Q Consensus 237 ~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~- 315 (424)
.+.+|..+ .+++|+.|++++|.....+|.. ..+|+.|+|++|.+. .+|.++..+++|+.|++++|+-...+|..
T Consensus 815 L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 815 LETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred cCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccc
Confidence 44666655 6778888888887654444432 357888888888887 56777888888888888885444445433
Q ss_pred CcccccccccccCCcCC
Q 042802 316 GIFTSFIAESFMGNELL 332 (424)
Q Consensus 316 ~~~~~l~~~~~~~n~~l 332 (424)
..+..+..+++.+|+.+
T Consensus 890 ~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 890 SKLKHLETVDFSDCGAL 906 (1153)
T ss_pred ccccCCCeeecCCCccc
Confidence 44556666666666544
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=4e-22 Score=213.71 Aligned_cols=312 Identities=20% Similarity=0.227 Sum_probs=239.1
Q ss_pred chhhhcCCCCCEEeccCCc------ccccCccccCCCC-CCCEEEccCCccCCCCCcccccccccCCccCceeeccCccC
Q 042802 6 PSSITNASKLTVLELGGNT------FSGFIPNTIGNLR-NHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPL 78 (424)
Q Consensus 6 p~~~~~~~~L~~L~l~~n~------~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 78 (424)
+..|..|++|+.|.+..+. +...+|..|..++ +|+.|++.++.+..+| ..+ ...+|+.|++.+|.+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP------~~f-~~~~L~~L~L~~s~l 623 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMP------SNF-RPENLVKLQMQGSKL 623 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCC------CcC-CccCCcEEECcCccc
Confidence 3568889999999986553 3345677777664 6999999999988887 344 468899999999998
Q ss_pred CccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChh
Q 042802 79 DGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDE 158 (424)
Q Consensus 79 ~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~ 158 (424)
. .++..+..+ .+|++|+++++...+.+| .+..+++|++|++++|.....+|..++.+++|+.|++++|.....+|..
T Consensus 624 ~-~L~~~~~~l-~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 624 E-KLWDGVHSL-TGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred c-ccccccccC-CCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 7 677778777 499999999887666676 4788999999999998766688999999999999999998766677765
Q ss_pred hcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCc---------eeeeccCCc-------ccccccccccc
Q 042802 159 LCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI---------LFFDFSSNF-------LVGPLSLDIGN 222 (424)
Q Consensus 159 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i---------~~l~l~~n~-------~~~~~~~~l~~ 222 (424)
+ ++++|+.|.+++|...+.+|.. .++|+.|++++|.+..+ ..+.+.++. +....+.....
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred C-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhc
Confidence 5 7889999999998766666643 46789999999886653 233333311 11111112233
Q ss_pred cCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEE
Q 042802 223 LKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELN 302 (424)
Q Consensus 223 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 302 (424)
.++|+.|++++|...+.+|.+++++++|+.|++++|...+.+|... .+++|+.|++++|.....+|.. .++|+.|+
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~ 852 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLN 852 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeE
Confidence 5689999999998777899999999999999999987555777655 7899999999998665555543 36789999
Q ss_pred cccccCcccCCC-CCcccccccccccCCcCCcCCC
Q 042802 303 LSFNKLEGEIPS-GGIFTSFIAESFMGNELLCGLP 336 (424)
Q Consensus 303 l~~n~l~~~~p~-~~~~~~l~~~~~~~n~~lc~~~ 336 (424)
+++|.+. .+|. ...++++..+++.+|+.+...|
T Consensus 853 Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 853 LSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred CCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccC
Confidence 9999998 4553 3678888999999987766544
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.4e-21 Score=195.88 Aligned_cols=256 Identities=25% Similarity=0.314 Sum_probs=180.1
Q ss_pred CCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccc
Q 042802 13 SKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMS 92 (424)
Q Consensus 13 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~ 92 (424)
..-..|+++++.++ .+|..+. ++|+.|++.+|+++.+|. .+++|+.|++++|.++ .+|.. +.+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~---------lp~~Lk~LdLs~N~Lt-sLP~l----p~s 263 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLT-SLPVL----PPG 263 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC---------CCCCCcEEEecCCccC-cccCc----ccc
Confidence 44567888888887 4566554 478888888888887762 1467888888888877 45532 347
Q ss_pred cceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccC
Q 042802 93 LKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILG 172 (424)
Q Consensus 93 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 172 (424)
|++|++++|.+. .+|.. ..+|+.|++++|+++ .+|. ..++|+.|++++|.+.+ +|.. ..+|+.|++++
T Consensus 264 L~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~ 331 (788)
T PRK15387 264 LLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYN 331 (788)
T ss_pred cceeeccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---ccccccccccc
Confidence 788888888775 33432 246777888888877 4554 24678888888887774 3432 23566777777
Q ss_pred CcCccCCCccCCCCCCCCEEEccCCCCCCc-------eeeeccCCcccccccccccccCcccEEECccCcccccCchhhc
Q 042802 173 NKPSGSIPSCLSNLTSLRSLYLGSNSLKDI-------LFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIV 245 (424)
Q Consensus 173 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i-------~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 245 (424)
|.+.+ +|.. ..+|+.|++++|+++.+ ..+++++|.+.. +|.. .++|+.|++++|.++ .+|..
T Consensus 332 N~L~~-LP~l---p~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l-- 400 (788)
T PRK15387 332 NQLTS-LPTL---PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL-- 400 (788)
T ss_pred Ccccc-cccc---ccccceEecCCCccCCCCCCCcccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc--
Confidence 77764 3431 24677888888877663 456677776664 4533 357899999999998 45543
Q ss_pred cCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCC
Q 042802 246 GLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPS 314 (424)
Q Consensus 246 ~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 314 (424)
.++|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|..+..++.|+.|++++|++++.+|.
T Consensus 401 -~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 401 -PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred -ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 3678999999999984 5643 357888999999998 6788889999999999999999877553
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=5.3e-24 Score=189.43 Aligned_cols=287 Identities=24% Similarity=0.296 Sum_probs=203.1
Q ss_pred cCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCC-CCcccccccccCCccCceeeccC-ccCCcc
Q 042802 4 TIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSS-TSKLSFLSSLANCKKLRNINLIG-NPLDGF 81 (424)
Q Consensus 4 ~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~ 81 (424)
++|..+- ..-+.++|..|+|+...+.+|+.+++|+.|||+.|.|+.+ | .+|..++.|..|-+.+ |+|+..
T Consensus 60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p------~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP------DAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcCh------HhhhhhHhhhHHHhhcCCchhhh
Confidence 3455443 3457888889999888888899999999999999999888 5 7788888887776655 888854
Q ss_pred CChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcC
Q 042802 82 LPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCH 161 (424)
Q Consensus 82 ~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 161 (424)
-...|+.+ ..|+.|.+.-|++.-...+.|..++++..|.+.+|.+...--.+|..+..++++++..|.+.. .++
T Consensus 132 ~k~~F~gL-~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCn 205 (498)
T KOG4237|consen 132 PKGAFGGL-SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCN 205 (498)
T ss_pred hhhHhhhH-HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccc
Confidence 44667777 488888888888887778888899999999999998884444478888899999888877431 123
Q ss_pred CcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCc---------eee--ec-cCCccccccc-ccccccCcccE
Q 042802 162 LARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDI---------LFF--DF-SSNFLVGPLS-LDIGNLKVLVR 228 (424)
Q Consensus 162 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i---------~~l--~l-~~n~~~~~~~-~~l~~l~~L~~ 228 (424)
++.+..... ..|..++...-.....+.+.++..+ +.+ .+ +.+...+..| ..|..+++|++
T Consensus 206 L~wla~~~a-------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ 278 (498)
T KOG4237|consen 206 LPWLADDLA-------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRK 278 (498)
T ss_pred cchhhhHHh-------hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceE
Confidence 333222111 1111122222222222222222111 000 00 1111112222 34788899999
Q ss_pred EECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccC
Q 042802 229 INLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKL 308 (424)
Q Consensus 229 L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 308 (424)
|++++|.++++-+.+|.++..+++|.|..|++...-...|.++.+|+.|+|.+|+++..-|..|..+.+|.+|++-.|++
T Consensus 279 lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 279 LNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred eccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 99999999988888999999999999999998877777888899999999999999988888898999999999998888
Q ss_pred ccc
Q 042802 309 EGE 311 (424)
Q Consensus 309 ~~~ 311 (424)
.+.
T Consensus 359 ~Cn 361 (498)
T KOG4237|consen 359 NCN 361 (498)
T ss_pred cCc
Confidence 654
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.2e-20 Score=187.33 Aligned_cols=245 Identities=24% Similarity=0.302 Sum_probs=187.5
Q ss_pred cCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCC
Q 042802 4 TIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLP 83 (424)
Q Consensus 4 ~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 83 (424)
.+|+.+. ++|+.|++++|+++. +|. ..++|++|++++|+++.+|. . .++|+.|++++|.+. .+|
T Consensus 215 sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~------l---p~sL~~L~Ls~N~L~-~Lp 278 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV------L---PPGLLELSIFSNPLT-HLP 278 (788)
T ss_pred cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccC------c---ccccceeeccCCchh-hhh
Confidence 5788775 489999999999994 554 25899999999999998872 1 358889999999887 455
Q ss_pred hhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCc
Q 042802 84 SSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLA 163 (424)
Q Consensus 84 ~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 163 (424)
. ++.+|+.|++++|++.. +|. ..++|+.|++++|.+++ +|... ..|+.|++++|.+. .+|.. ..
T Consensus 279 ~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~-~LP~l---p~ 342 (788)
T PRK15387 279 A----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLT-SLPTL---PS 342 (788)
T ss_pred h----chhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCCc---ccccccccccCccc-ccccc---cc
Confidence 4 23578899999998864 443 24689999999999884 55432 35777888888887 34532 24
Q ss_pred ccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCC-------ceeeeccCCcccccccccccccCcccEEECccCcc
Q 042802 164 RLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD-------ILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNL 236 (424)
Q Consensus 164 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-------i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 236 (424)
+|+.|++++|.+.+ +|.. .++|+.|++++|.++. +..+++++|.+.+ +|.. .++|+.|++++|.+
T Consensus 343 ~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~L 414 (788)
T PRK15387 343 GLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRL 414 (788)
T ss_pred ccceEecCCCccCC-CCCC---CcccceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcC
Confidence 78888888888874 4432 3567778888887755 4678888888775 4433 36799999999999
Q ss_pred cccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCccccc
Q 042802 237 SGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSME 293 (424)
Q Consensus 237 ~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 293 (424)
+ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+.
T Consensus 415 s-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 415 T-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred C-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 8 46653 357889999999998 6898899999999999999999988777663
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=1.3e-20 Score=190.01 Aligned_cols=247 Identities=22% Similarity=0.333 Sum_probs=189.4
Q ss_pred CCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccc
Q 042802 13 SKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMS 92 (424)
Q Consensus 13 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~ 92 (424)
.+.+.|+++++.++ .+|..+. ++|+.|++++|.++.+|. .+. .+|+.|++++|.++ .+|..+. .+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsLP~------~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~ 242 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELKSLPE------NLQ--GNIKTLYANSNQLT-SIPATLP---DT 242 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcCCh------hhc--cCCCEEECCCCccc-cCChhhh---cc
Confidence 46789999999988 4565553 579999999999998873 232 58999999999998 6787653 47
Q ss_pred cceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccC
Q 042802 93 LKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILG 172 (424)
Q Consensus 93 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 172 (424)
|+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++. .+|..+. ++|+.|++++
T Consensus 243 L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 243 IQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQS 313 (754)
T ss_pred ccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcC
Confidence 999999999986 5666654 58999999999998 5777654 58999999999988 4554442 4788999999
Q ss_pred CcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccE
Q 042802 173 NKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQF 252 (424)
Q Consensus 173 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 252 (424)
|.+.. +|..+ .++|+.|++++|.++. +|..+. ++|+.|++++|+++ .+|..+. ++|+.
T Consensus 314 N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~--------------LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~ 371 (754)
T PRK15370 314 NSLTA-LPETL--PPGLKTLEAGENALTS--------------LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITT 371 (754)
T ss_pred Ccccc-CCccc--cccceeccccCCcccc--------------CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCE
Confidence 99885 44433 3688999998888775 333332 68999999999988 5676553 68999
Q ss_pred eeccCccccccchhhhcCCCCCCEEECcCCCCCCCCccc----ccCCCCCCEEEcccccCc
Q 042802 253 MDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTS----MEKLVYLRELNLSFNKLE 309 (424)
Q Consensus 253 L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l~ 309 (424)
|++++|.++ .+|..+. ..|+.|++++|++. .+|.. ...++.+..+++.+|+++
T Consensus 372 LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 372 LDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred EECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 999999988 4565554 46889999999988 44543 344578889999999886
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=8.1e-22 Score=192.58 Aligned_cols=280 Identities=28% Similarity=0.322 Sum_probs=181.2
Q ss_pred ecCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCC----Cccccc---------ccccCCccCc
Q 042802 3 GTIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSST----SKLSFL---------SSLANCKKLR 69 (424)
Q Consensus 3 g~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~---------~~l~~l~~L~ 69 (424)
+.++-++..+++ .||+++|.+. . -.+.++.+|++|....|.+..+. ....+. ..-..-.+|+
T Consensus 170 ~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~ 244 (1081)
T KOG0618|consen 170 GSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQ 244 (1081)
T ss_pred cchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccce
Confidence 455556666665 6777777766 1 12445566666666665554431 000000 0011124566
Q ss_pred eeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCC
Q 042802 70 NINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFN 149 (424)
Q Consensus 70 ~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 149 (424)
.+++++|.+. .+|+.++.+ .+|+.+++.+|.+ ..+|..+....+|+.|.+..|.+. .+|....+++.|++|+|..|
T Consensus 245 ~~dis~n~l~-~lp~wi~~~-~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 245 YLDISHNNLS-NLPEWIGAC-ANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred eeecchhhhh-cchHHHHhc-ccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhc
Confidence 6666666666 456666666 3677777777766 455666666667777777777776 56666777778888888777
Q ss_pred cccccCChhh-cC-------------------------CcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCce
Q 042802 150 KLVGSFPDEL-CH-------------------------LARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDIL 203 (424)
Q Consensus 150 ~~~~~~~~~l-~~-------------------------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~ 203 (424)
.+. .+|+.+ .. ++.|+.|++.+|.++...-+.+.++++|+.|++++|++..
T Consensus 321 ~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-- 397 (1081)
T KOG0618|consen 321 NLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-- 397 (1081)
T ss_pred ccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc--
Confidence 776 333322 11 1234455555555554444445555555555555555544
Q ss_pred eeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCC
Q 042802 204 FFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNK 283 (424)
Q Consensus 204 ~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 283 (424)
.....+.+++.|+.|+++||+++ .+|..+..+..|++|...+|++. ..| .+..++.|+.+|++.|+
T Consensus 398 -----------fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 398 -----------FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred -----------CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccch
Confidence 34456788899999999999998 88899999999999999999997 667 68899999999999999
Q ss_pred CCCCCcccccCCCCCCEEEcccccC
Q 042802 284 ISGPIPTSMEKLVYLRELNLSFNKL 308 (424)
Q Consensus 284 l~~~~~~~l~~l~~L~~L~l~~n~l 308 (424)
++...-......++|++||+++|.-
T Consensus 464 L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 464 LSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhhhCCCcccceeeccCCcc
Confidence 9854333333348999999999974
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=4.8e-22 Score=177.05 Aligned_cols=285 Identities=22% Similarity=0.222 Sum_probs=197.6
Q ss_pred EEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceee
Q 042802 42 LNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALT 121 (424)
Q Consensus 42 L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 121 (424)
++-++-.++++|. .+- +.-..++|..|+|+...+..|..+ ++|+.|||++|+|..+.|++|.++..+.+|.
T Consensus 51 VdCr~~GL~eVP~------~LP--~~tveirLdqN~I~~iP~~aF~~l-~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lv 121 (498)
T KOG4237|consen 51 VDCRGKGLTEVPA------NLP--PETVEIRLDQNQISSIPPGAFKTL-HRLRRLDLSKNNISFIAPDAFKGLASLLSLV 121 (498)
T ss_pred EEccCCCcccCcc------cCC--CcceEEEeccCCcccCChhhccch-hhhceecccccchhhcChHhhhhhHhhhHHH
Confidence 4444555555552 221 344567788888885555666666 4888888888888888888888888877776
Q ss_pred ccc-CccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCC
Q 042802 122 LEG-NKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLK 200 (424)
Q Consensus 122 l~~-n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 200 (424)
+.+ |+|+......|+++.+|+.|.+.-|++.-...+.|..+++|..|.+.+|.+...-...+..+.+++.+.+..|.+-
T Consensus 122 lyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i 201 (498)
T KOG4237|consen 122 LYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI 201 (498)
T ss_pred hhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc
Confidence 666 7888555567888888888888888887677777888888888888888777555557777788888877776532
Q ss_pred Cc-----------------------eeeeccCCcccccccccccc-cCcccEEECccCcccccCch-hhccCcCccEeec
Q 042802 201 DI-----------------------LFFDFSSNFLVGPLSLDIGN-LKVLVRINLSKNNLSGDIPA-TIVGLKDLQFMDL 255 (424)
Q Consensus 201 ~i-----------------------~~l~l~~n~~~~~~~~~l~~-l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l 255 (424)
.. ....+..+++...-+..+.. ...+.+--.+.+...+..|. .|..+++|+.|+|
T Consensus 202 cdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnl 281 (498)
T KOG4237|consen 202 CDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNL 281 (498)
T ss_pred cccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEecc
Confidence 21 00001111111111111110 01111111222333334444 5889999999999
Q ss_pred cCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCCC-CcccccccccccCCcCCcC
Q 042802 256 AYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSG-GIFTSFIAESFMGNELLCG 334 (424)
Q Consensus 256 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~n~~lc~ 334 (424)
++|+++++-+.+|.+...++.|.|..|++...-...|.++..|+.|++.+|+++...|.. .....+..+.+.+||+.|+
T Consensus 282 snN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 282 SNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred CCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 999999999999999999999999999998666678899999999999999999877754 3445677888999999997
Q ss_pred C
Q 042802 335 L 335 (424)
Q Consensus 335 ~ 335 (424)
+
T Consensus 362 C 362 (498)
T KOG4237|consen 362 C 362 (498)
T ss_pred c
Confidence 5
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=4e-20 Score=186.48 Aligned_cols=233 Identities=23% Similarity=0.352 Sum_probs=182.5
Q ss_pred cCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCC
Q 042802 4 TIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLP 83 (424)
Q Consensus 4 ~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 83 (424)
.+|..+. ++|+.|++++|.++ .+|..+. ++|++|++++|.++.+|. .+. .+|+.|++++|.+. .+|
T Consensus 192 sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~------~l~--~~L~~L~Ls~N~L~-~LP 257 (754)
T PRK15370 192 TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPA------TLP--DTIQEMELSINRIT-ELP 257 (754)
T ss_pred cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCCh------hhh--ccccEEECcCCccC-cCC
Confidence 3565553 57999999999999 4565443 689999999999998873 332 47999999999998 788
Q ss_pred hhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCc
Q 042802 84 SSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLA 163 (424)
Q Consensus 84 ~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 163 (424)
..+. .+|++|++++|++. .+|..+. ++|+.|++++|+++ .+|..+. .+|+.|++++|.+.. +|..+ .+
T Consensus 258 ~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~ 325 (754)
T PRK15370 258 ERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL--PP 325 (754)
T ss_pred hhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCccc--cc
Confidence 7764 48999999999997 4676553 58999999999999 4665443 478999999999984 55544 36
Q ss_pred ccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchh
Q 042802 164 RLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPAT 243 (424)
Q Consensus 164 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 243 (424)
+|+.|++++|.+++ +|..+. ++|+.|++++|+++. +|..+ .++|+.|++++|.++ .+|..
T Consensus 326 sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~--------------LP~~l--p~~L~~LdLs~N~Lt-~LP~~ 385 (754)
T PRK15370 326 GLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV--------------LPETL--PPTITTLDVSRNALT-NLPEN 385 (754)
T ss_pred cceeccccCCcccc-CChhhc--CcccEEECCCCCCCc--------------CChhh--cCCcCEEECCCCcCC-CCCHh
Confidence 89999999999885 565443 789999999998875 34333 268999999999998 56665
Q ss_pred hccCcCccEeeccCccccccchh----hhcCCCCCCEEECcCCCCC
Q 042802 244 IVGLKDLQFMDLAYNRSEGPIPE----LFGDLTSLEVLNLSKNKIS 285 (424)
Q Consensus 244 ~~~l~~L~~L~ls~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~ 285 (424)
+. ..|+.|++++|++. .+|. .++.++.+..|++.+|+++
T Consensus 386 l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 386 LP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 54 47999999999998 4443 4455688999999999987
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.82 E-value=2.3e-21 Score=181.13 Aligned_cols=280 Identities=23% Similarity=0.224 Sum_probs=136.6
Q ss_pred EEeccCCccc-ccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCc------cCChhHHhc
Q 042802 17 VLELGGNTFS-GFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDG------FLPSSIGNL 89 (424)
Q Consensus 17 ~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~------~~~~~~~~l 89 (424)
.|+|..+.++ ......+..+.+|+.|+++++.++... ...+...+...+.|+.++++++.+.+ .++..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~-~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEA-AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHH-HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 3555555555 333344455566666666666654321 00111334455556666666665541 122334444
Q ss_pred ccccceeEeecCcCcccchhhhcCCcc---cceeecccCcccc----ccCcccCCC-CCCCeEEccCCccccc----CCh
Q 042802 90 SMSLKTLIIANCSIIGNIRRAIGNLSN---LLALTLEGNKLTG----PIPITFGRL-QKLQGLDLAFNKLVGS----FPD 157 (424)
Q Consensus 90 ~~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~l~~n~l~~----~~p~~~~~l-~~L~~L~L~~n~~~~~----~~~ 157 (424)
.+|++|++++|.+....+..+..+.+ |++|++++|.+.. .+...+..+ ++|+.|++++|.+++. ++.
T Consensus 81 -~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 -CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred -CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 36666666666665444444443333 6666666665542 122233444 5666666666665521 223
Q ss_pred hhcCCcccceEeccCCcCccC----CCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECcc
Q 042802 158 ELCHLARLAEFVILGNKPSGS----IPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSK 233 (424)
Q Consensus 158 ~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 233 (424)
.+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+++.. ...++..+..+++|++|++++
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~---------~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG---------ASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH---------HHHHHHHhcccCCCCEEecCC
Confidence 344455566666666555421 1222334456666666666554310 011222344455666666666
Q ss_pred CcccccCchhhc-----cCcCccEeeccCccccc----cchhhhcCCCCCCEEECcCCCCCCC----CcccccCC-CCCC
Q 042802 234 NNLSGDIPATIV-----GLKDLQFMDLAYNRSEG----PIPELFGDLTSLEVLNLSKNKISGP----IPTSMEKL-VYLR 299 (424)
Q Consensus 234 n~l~~~~p~~~~-----~l~~L~~L~ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l-~~L~ 299 (424)
|.+++.....+. ..+.|+.|++++|.++. .+...+..+++|+++++++|.+... ....+... +.|+
T Consensus 231 n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~ 310 (319)
T cd00116 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELE 310 (319)
T ss_pred CcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchh
Confidence 665532222221 12466666666666541 1223344455666666666666533 22233333 4556
Q ss_pred EEEccccc
Q 042802 300 ELNLSFNK 307 (424)
Q Consensus 300 ~L~l~~n~ 307 (424)
.+++.+|+
T Consensus 311 ~~~~~~~~ 318 (319)
T cd00116 311 SLWVKDDS 318 (319)
T ss_pred hcccCCCC
Confidence 66665554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=8.9e-20 Score=170.41 Aligned_cols=272 Identities=22% Similarity=0.252 Sum_probs=200.8
Q ss_pred cCchhhhcCCCCCEEeccCCccccc----CccccCCCCCCCEEEccCCccCCCCCcc-cccccccCCccCceeeccCccC
Q 042802 4 TIPSSITNASKLTVLELGGNTFSGF----IPNTIGNLRNHEWLNLANNSLTSSTSKL-SFLSSLANCKKLRNINLIGNPL 78 (424)
Q Consensus 4 ~lp~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~~ 78 (424)
..+..+..+.+|++|+++++.++.. ++..+...+++++++++++.+...+..+ .+...+..+++|+.|++++|.+
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 3445566778899999999998543 4556677888999999999887422211 1224677789999999999999
Q ss_pred CccCChhHHhcccc---cceeEeecCcCcc----cchhhhcCC-cccceeecccCccccc----cCcccCCCCCCCeEEc
Q 042802 79 DGFLPSSIGNLSMS---LKTLIIANCSIIG----NIRRAIGNL-SNLLALTLEGNKLTGP----IPITFGRLQKLQGLDL 146 (424)
Q Consensus 79 ~~~~~~~~~~l~~~---L~~L~l~~n~l~~----~~~~~l~~l-~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L 146 (424)
....+..+..+. + |++|++++|.+.. .+...+..+ ++|+.|++++|.+++. ++..+..+.+|++|++
T Consensus 94 ~~~~~~~~~~l~-~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 94 GPDGCGVLESLL-RSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172 (319)
T ss_pred ChhHHHHHHHHh-ccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence 877777777764 4 9999999999863 233456677 8999999999998832 3445677889999999
Q ss_pred cCCccccc----CChhhcCCcccceEeccCCcCccC----CCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccc
Q 042802 147 AFNKLVGS----FPDELCHLARLAEFVILGNKPSGS----IPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSL 218 (424)
Q Consensus 147 ~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~ 218 (424)
++|.+.+. ++..+..+++|+.|++++|.+.+. +...+..+++|+.|++++|.+++.....+. ..
T Consensus 173 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~--------~~ 244 (319)
T cd00116 173 ANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA--------SA 244 (319)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH--------HH
Confidence 99998742 344556678999999999988633 334567789999999999988752110100 00
Q ss_pred cccccCcccEEECccCcccc----cCchhhccCcCccEeeccCcccccc----chhhhcCC-CCCCEEECcCCCC
Q 042802 219 DIGNLKVLVRINLSKNNLSG----DIPATIVGLKDLQFMDLAYNRSEGP----IPELFGDL-TSLEVLNLSKNKI 284 (424)
Q Consensus 219 ~l~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~ls~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l 284 (424)
.....+.|++|++++|.++. .+...+..+++|+.+++++|.+... ....+... +.|+.+++.+|++
T Consensus 245 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 245 LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 01124789999999999872 3344566778999999999999854 44455555 7899999988864
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=9.3e-20 Score=144.77 Aligned_cols=158 Identities=29% Similarity=0.463 Sum_probs=118.2
Q ss_pred cccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCC
Q 042802 61 SLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQK 140 (424)
Q Consensus 61 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 140 (424)
.+-.+.+.+.|.+++|+++ .+|..++.+ .+|+.|++.+|++ ...|..++.+++|+.|+++-|++. ..|..|+.++.
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l-~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAEL-KNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHh-hhhhhhhcccchh-hhcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 3456677788888999888 677788888 4899999998888 467788888999999999988888 78889999999
Q ss_pred CCeEEccCCccc-ccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCccccccccc
Q 042802 141 LQGLDLAFNKLV-GSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLD 219 (424)
Q Consensus 141 L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~ 219 (424)
|+.|||.+|.+. ..+|..|..++.|+.|++++|.+. .+|..++.+++|+.|.+..|.+-+ +|..
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~--------------lpke 168 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS--------------LPKE 168 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh--------------CcHH
Confidence 999999988876 357778888888888888888776 555556666666666666665433 3444
Q ss_pred ccccCcccEEECccCccc
Q 042802 220 IGNLKVLVRINLSKNNLS 237 (424)
Q Consensus 220 l~~l~~L~~L~l~~n~l~ 237 (424)
++.+..|++|++.+|+++
T Consensus 169 ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred HHHHHHHHHHhcccceee
Confidence 444555555555555444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=7.4e-20 Score=145.30 Aligned_cols=156 Identities=33% Similarity=0.479 Sum_probs=102.1
Q ss_pred hcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhc
Q 042802 10 TNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNL 89 (424)
Q Consensus 10 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l 89 (424)
.++.+.+.|.+++|.++ ..|..++++.+|+.|++.+|+++++| .++..+++|+.|+++-|.+. .+|..|+.+
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp------~~issl~klr~lnvgmnrl~-~lprgfgs~ 101 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELP------TSISSLPKLRILNVGMNRLN-ILPRGFGSF 101 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcC------hhhhhchhhhheecchhhhh-cCccccCCC
Confidence 34566666666777666 44445666677777777777766666 56666667777776666665 566666666
Q ss_pred ccccceeEeecCcCcc-cchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceE
Q 042802 90 SMSLKTLIIANCSIIG-NIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEF 168 (424)
Q Consensus 90 ~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 168 (424)
| .|+.||+.+|++.. ..|..|..+..|+-|++++|.+. .+|..++++.+|+.|.+.+|.+. .+|..++.+++|+.|
T Consensus 102 p-~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 102 P-ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLREL 178 (264)
T ss_pred c-hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence 4 67777776666643 34556666666666667766666 56666666677777766666665 566666666666666
Q ss_pred eccCCcCc
Q 042802 169 VILGNKPS 176 (424)
Q Consensus 169 ~l~~n~~~ 176 (424)
.+.+|.++
T Consensus 179 hiqgnrl~ 186 (264)
T KOG0617|consen 179 HIQGNRLT 186 (264)
T ss_pred hcccceee
Confidence 66666665
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.63 E-value=1.5e-15 Score=152.78 Aligned_cols=118 Identities=38% Similarity=0.602 Sum_probs=106.2
Q ss_pred cccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcc
Q 042802 225 VLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLS 304 (424)
Q Consensus 225 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 304 (424)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCCC--cccccccccccCCcCCcCCCCCCCCCCC
Q 042802 305 FNKLEGEIPSGG--IFTSFIAESFMGNELLCGLPNLQVQPCK 344 (424)
Q Consensus 305 ~n~l~~~~p~~~--~~~~l~~~~~~~n~~lc~~~~~~~~~c~ 344 (424)
+|+++|.+|... ....+..+.+.+|+.+|+.|. ...|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~--l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG--LRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCC--CCCCc
Confidence 999999999752 233456788999999999875 45675
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.40 E-value=2.5e-12 Score=129.60 Aligned_cols=112 Identities=36% Similarity=0.540 Sum_probs=102.7
Q ss_pred ceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcC
Q 042802 202 ILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSK 281 (424)
Q Consensus 202 i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~ 281 (424)
+..+++++|.+.|.+|..+..+++|+.|+|++|.+.|.+|..+..+++|+.|+|++|++++.+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCC-CCCCEEEcccccCcccCC
Q 042802 282 NKISGPIPTSMEKL-VYLRELNLSFNKLEGEIP 313 (424)
Q Consensus 282 n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p 313 (424)
|.++|.+|..+... .++..+++.+|+..+..|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999888764 467789999998766555
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.37 E-value=2.2e-14 Score=134.24 Aligned_cols=168 Identities=27% Similarity=0.436 Sum_probs=90.3
Q ss_pred eEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcC
Q 042802 96 LIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKP 175 (424)
Q Consensus 96 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 175 (424)
.|++.|++ ..+|..++.+..|+.+.++.|.+. .+|..++.+..|++++|+.|++. .+|..++.++ |+.|.+++|++
T Consensus 80 aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRF-SELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhcccccc-ccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence 44444444 234444444455555555555555 44555555555555555555554 4444444443 45555555554
Q ss_pred ccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeec
Q 042802 176 SGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDL 255 (424)
Q Consensus 176 ~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 255 (424)
+ .+|+.++..+.|..|+.+.|.+.. +|..++.+.+|+.|.+..|++. .+|..+. .-.|..||+
T Consensus 156 ~-~lp~~ig~~~tl~~ld~s~nei~s--------------lpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDf 218 (722)
T KOG0532|consen 156 T-SLPEEIGLLPTLAHLDVSKNEIQS--------------LPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDF 218 (722)
T ss_pred c-cCCcccccchhHHHhhhhhhhhhh--------------chHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeec
Confidence 4 344445555555555555555544 4455555666666666666655 4455554 234555666
Q ss_pred cCccccccchhhhcCCCCCCEEECcCCCCC
Q 042802 256 AYNRSEGPIPELFGDLTSLEVLNLSKNKIS 285 (424)
Q Consensus 256 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 285 (424)
|.|++. .+|-.|..|..|++|-|.+|++.
T Consensus 219 ScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 219 SCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 666665 45556666666666666666665
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=6.8e-14 Score=130.99 Aligned_cols=191 Identities=24% Similarity=0.349 Sum_probs=118.6
Q ss_pred CCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccc
Q 042802 39 HEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLL 118 (424)
Q Consensus 39 L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 118 (424)
-...|++.|++..+| ..+..+..|+.+.+..|.+. .+|..++++ ..|++|+++.|++. ..|..++.++ |+
T Consensus 77 t~~aDlsrNR~~elp------~~~~~f~~Le~liLy~n~~r-~ip~~i~~L-~~lt~l~ls~NqlS-~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 77 TVFADLSRNRFSELP------EEACAFVSLESLILYHNCIR-TIPEAICNL-EALTFLDLSSNQLS-HLPDGLCDLP-LK 146 (722)
T ss_pred hhhhhccccccccCc------hHHHHHHHHHHHHHHhccce-ecchhhhhh-hHHHHhhhccchhh-cCChhhhcCc-ce
Confidence 345666777777666 44555556666666666666 566667666 36777777777763 5555665543 56
Q ss_pred eeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCC
Q 042802 119 ALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNS 198 (424)
Q Consensus 119 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 198 (424)
.|-+++|+++ .+|..++.++.|..|+.+.|.+. .+|..+..+.+|+.|.+..|.+.. +|..+. .-.|..||++.|+
T Consensus 147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~-~LpLi~lDfScNk 222 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELC-SLPLIRLDFSCNK 222 (722)
T ss_pred eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHh-CCceeeeecccCc
Confidence 6667777766 56666666667777777777665 566666667777777766666653 333444 3346666666666
Q ss_pred CCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccC---cCccEeeccCc
Q 042802 199 LKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGL---KDLQFMDLAYN 258 (424)
Q Consensus 199 l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l---~~L~~L~ls~n 258 (424)
++. +|..|.+|+.|++|-|.+|.++ ..|..++.. .=.++|+..-+
T Consensus 223 is~--------------iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 223 ISY--------------LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eee--------------cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 554 5667777777777777777776 455544322 22345555555
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.33 E-value=2.8e-12 Score=123.37 Aligned_cols=199 Identities=36% Similarity=0.524 Sum_probs=136.5
Q ss_pred eeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCc-ccceeecccCccccccCcccCCCCCCCeEEccC
Q 042802 70 NINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLS-NLLALTLEGNKLTGPIPITFGRLQKLQGLDLAF 148 (424)
Q Consensus 70 ~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~ 148 (424)
.+++..+.+... ...+..+ ..++.|++.+|.++ .++....... +|+.|++++|.+. .+|..++.++.|+.|++++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~-~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLEL-TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccC-chhhhcc-cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 466666666422 2334444 36777888877775 3444455553 7888888888877 5656677788888888888
Q ss_pred CcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccE
Q 042802 149 NKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVR 228 (424)
Q Consensus 149 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~ 228 (424)
|++. .+|......+.|+.|++++|.+. .+|........|+++.+++|.... .+..+.++.++..
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~--------------~~~~~~~~~~l~~ 236 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE--------------LLSSLSNLKNLSG 236 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee--------------cchhhhhcccccc
Confidence 8877 45555557777888888888777 344433445568888888775322 3445666777777
Q ss_pred EECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCccc
Q 042802 229 INLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTS 291 (424)
Q Consensus 229 L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 291 (424)
+.+.+|.+. ..+..+..++++++|++++|.++. ++. ++.+.+++.|++++|.+....+..
T Consensus 237 l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 237 LELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchhh
Confidence 778888776 446777788888899999988874 333 788888999999998888665543
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.33 E-value=3.3e-12 Score=122.92 Aligned_cols=200 Identities=34% Similarity=0.452 Sum_probs=140.7
Q ss_pred EEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhccc-ccceeEeecCcCcccchhhhcCCcccce
Q 042802 41 WLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSM-SLKTLIIANCSIIGNIRRAIGNLSNLLA 119 (424)
Q Consensus 41 ~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 119 (424)
.+++..+.+.... ..+..++.++.|++.+|.++ .++...... . +|++|++++|.+. .+|..+..+++|+.
T Consensus 97 ~l~~~~~~~~~~~------~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~-~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~ 167 (394)
T COG4886 97 SLDLNLNRLRSNI------SELLELTNLTSLDLDNNNIT-DIPPLIGLL-KSNLKELDLSDNKIE-SLPSPLRNLPNLKN 167 (394)
T ss_pred eeeccccccccCc------hhhhcccceeEEecCCcccc-cCccccccc-hhhcccccccccchh-hhhhhhhccccccc
Confidence 5777777763332 34555577888888888887 566555544 2 6888888888874 44556778888888
Q ss_pred eecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCC
Q 042802 120 LTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSL 199 (424)
Q Consensus 120 L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 199 (424)
|++++|++. .+|...+.++.|+.|++++|.+. .+|........|+.+.+++|... ..+..+..+.++..+.+.+|++
T Consensus 168 L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 168 LDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred cccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCcee
Confidence 888888888 56665557788888888888887 56665555666888888888533 3445567777777777777766
Q ss_pred CCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhh
Q 042802 200 KDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELF 268 (424)
Q Consensus 200 ~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l 268 (424)
.. ++..++.++++++|++++|.++ .++. +..+.+++.|++++|.+....+...
T Consensus 245 ~~--------------~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 245 ED--------------LPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred ee--------------ccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhhh
Confidence 54 2455677777888888888887 3333 7778888888888888876655443
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.28 E-value=3.2e-13 Score=119.56 Aligned_cols=257 Identities=21% Similarity=0.258 Sum_probs=147.9
Q ss_pred hhhcCCCCCEEeccCCccccc----CccccCCCCCCCEEEccCCccCCC-----CC-cccccccccCCccCceeeccCcc
Q 042802 8 SITNASKLTVLELGGNTFSGF----IPNTIGNLRNHEWLNLANNSLTSS-----TS-KLSFLSSLANCKKLRNINLIGNP 77 (424)
Q Consensus 8 ~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~-----~~-~~~~~~~l~~l~~L~~L~l~~n~ 77 (424)
.+-.+..++.+++++|.+... +...+++.++|+..++++- +++. |. ...+..++..+++|++|+||+|.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 344567888899999888633 3445667788888888764 3332 21 12233556677788888888888
Q ss_pred CCccCChhHHhc---ccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCccccc
Q 042802 78 LDGFLPSSIGNL---SMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGS 154 (424)
Q Consensus 78 ~~~~~~~~~~~l---~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~ 154 (424)
+....++.+..+ +..|++|.|.+|.+....-..++. .|..|. . ......-+.|+.++...|++...
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~-------~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--V-------NKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--H-------HhccCCCcceEEEEeeccccccc
Confidence 776555544432 246777777777663222112111 111111 0 01122334555555555555421
Q ss_pred ----CChhhcCCcccceEeccCCcCcc----CCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcc
Q 042802 155 ----FPDELCHLARLAEFVILGNKPSG----SIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVL 226 (424)
Q Consensus 155 ----~~~~l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L 226 (424)
....|...+.|+.+.+..|.+.. .+...+..|++|+.||+.+|-++.--.. .+...++.+++|
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~---------~LakaL~s~~~L 243 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV---------ALAKALSSWPHL 243 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH---------HHHHHhcccchh
Confidence 12334455556666666555442 1223456677777777777766542111 123345556777
Q ss_pred cEEECccCcccccCchhh-----ccCcCccEeeccCcccccc----chhhhcCCCCCCEEECcCCCCC
Q 042802 227 VRINLSKNNLSGDIPATI-----VGLKDLQFMDLAYNRSEGP----IPELFGDLTSLEVLNLSKNKIS 285 (424)
Q Consensus 227 ~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 285 (424)
+.|++++|.+.......| ...++|+.|.+.+|.++.. +...+...+.|..|+|++|.+.
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 777777777764443333 2467888888888887643 2234455788889999999884
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=7.3e-13 Score=120.48 Aligned_cols=218 Identities=25% Similarity=0.269 Sum_probs=100.2
Q ss_pred hcCCCCCEEeccCCcccccCc-cccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHh
Q 042802 10 TNASKLTVLELGGNTFSGFIP-NTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGN 88 (424)
Q Consensus 10 ~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 88 (424)
+++.+|+++.+.++....... .....|++++.|||+.|-+..+... ..-...+++|+.|+++.|.+..........
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v---~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPV---LKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHH---HHHHHhcccchhcccccccccCCccccchh
Confidence 345566666666655441111 2344566666666666655554110 123345566666666666554222211111
Q ss_pred cccccceeEeecCcCccc-chhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccce
Q 042802 89 LSMSLKTLIIANCSIIGN-IRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAE 167 (424)
Q Consensus 89 l~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 167 (424)
..++|+.|.++.|.++.. +...+..+|+|+.|++..|...........-+..|++|+|++|.+.. .+.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~---------- 263 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQ---------- 263 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-ccc----------
Confidence 123566666666655422 11223345566666666553222222233344555555555555431 110
Q ss_pred EeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCc--hhhc
Q 042802 168 FVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIP--ATIV 245 (424)
Q Consensus 168 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p--~~~~ 245 (424)
-.....++.|+.|+++.+.++++...+.. ...-...+++|++|++..|++. ..+ ..+.
T Consensus 264 ------------~~~~~~l~~L~~Lnls~tgi~si~~~d~~-------s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~ 323 (505)
T KOG3207|consen 264 ------------GYKVGTLPGLNQLNLSSTGIASIAEPDVE-------SLDKTHTFPKLEYLNISENNIR-DWRSLNHLR 323 (505)
T ss_pred ------------ccccccccchhhhhccccCcchhcCCCcc-------chhhhcccccceeeecccCccc-cccccchhh
Confidence 01234455555555555555543222211 0011223455666666666653 111 2344
Q ss_pred cCcCccEeeccCcccc
Q 042802 246 GLKDLQFMDLAYNRSE 261 (424)
Q Consensus 246 ~l~~L~~L~ls~n~l~ 261 (424)
.+++|+.|.+..|.+.
T Consensus 324 ~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 324 TLENLKHLRITLNYLN 339 (505)
T ss_pred ccchhhhhhccccccc
Confidence 4556666665555554
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=2.8e-11 Score=100.46 Aligned_cols=107 Identities=31% Similarity=0.466 Sum_probs=24.1
Q ss_pred cCCCCCEEeccCCcccccCccccC-CCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHH-h
Q 042802 11 NASKLTVLELGGNTFSGFIPNTIG-NLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIG-N 88 (424)
Q Consensus 11 ~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~ 88 (424)
+..++++|+|++|.|+.. +.++ .+.+|+.|++++|.++.+ ..+..+++|+.|++++|.++ .+.+.+. .
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-------~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~ 86 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-------EGLPGLPRLKTLDLSNNRIS-SISEGLDKN 86 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---------TT----TT--EEE--SS----S-CHHHHHH
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-------cCccChhhhhhcccCCCCCC-ccccchHHh
Confidence 344555666666655522 1233 345556666666655554 23445555555555555555 2333332 2
Q ss_pred cccccceeEeecCcCccc-chhhhcCCcccceeecccCccc
Q 042802 89 LSMSLKTLIIANCSIIGN-IRRAIGNLSNLLALTLEGNKLT 128 (424)
Q Consensus 89 l~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~ 128 (424)
+ ++|++|++++|++... .-..+..+++|+.|++.+|.++
T Consensus 87 l-p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 87 L-PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred C-CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 3 2555555555555321 1123344444444444444443
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=2.8e-12 Score=113.64 Aligned_cols=40 Identities=20% Similarity=0.057 Sum_probs=18.5
Q ss_pred cCCcccceeecccCccccccCcc----cCCCCCCCeEEccCCcc
Q 042802 112 GNLSNLLALTLEGNKLTGPIPIT----FGRLQKLQGLDLAFNKL 151 (424)
Q Consensus 112 ~~l~~L~~L~l~~n~l~~~~p~~----~~~l~~L~~L~L~~n~~ 151 (424)
..+++|++||||+|-+...-+.. +.++..|++|+|.+|.+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 34445555555555544222222 23344555555555544
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=2.3e-11 Score=105.78 Aligned_cols=131 Identities=27% Similarity=0.331 Sum_probs=93.2
Q ss_pred cccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCch
Q 042802 163 ARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPA 242 (424)
Q Consensus 163 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 242 (424)
..|+.+++++|.++ .+.+...-.|.++.|++++|.+..+ ..+..+++|+.|++++|.++ .+-.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v---------------~nLa~L~~L~~LDLS~N~Ls-~~~G 346 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV---------------QNLAELPQLQLLDLSGNLLA-ECVG 346 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee---------------hhhhhcccceEeecccchhH-hhhh
Confidence 45667777777666 3334455567777777777776653 23666788888888888887 5556
Q ss_pred hhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCC-cccccCCCCCCEEEcccccCcccC
Q 042802 243 TIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPI-PTSMEKLVYLRELNLSFNKLEGEI 312 (424)
Q Consensus 243 ~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~ 312 (424)
|-..+.++++|.|+.|.+.. -..+..+-+|..||+++|++.... -..++++|.|+.+.+.+|++.+.+
T Consensus 347 wh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 347 WHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 66778888888888888752 234677778888888888886432 246778888888888888887544
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=1.1e-10 Score=96.95 Aligned_cols=82 Identities=28% Similarity=0.291 Sum_probs=27.2
Q ss_pred cccCcccEEECccCcccccCchhh-ccCcCccEeeccCccccccc-hhhhcCCCCCCEEECcCCCCCCCCc---ccccCC
Q 042802 221 GNLKVLVRINLSKNNLSGDIPATI-VGLKDLQFMDLAYNRSEGPI-PELFGDLTSLEVLNLSKNKISGPIP---TSMEKL 295 (424)
Q Consensus 221 ~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l 295 (424)
..++.|+.|++++|.++. +...+ ..+++|++|++++|++.... -..+..+++|+.|+|.+|+++...- ..+..+
T Consensus 61 ~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l 139 (175)
T PF14580_consen 61 PGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL 139 (175)
T ss_dssp ---TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred cChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence 344555555555555552 22222 24555666666666554321 1334556666666666666653311 234455
Q ss_pred CCCCEEEc
Q 042802 296 VYLRELNL 303 (424)
Q Consensus 296 ~~L~~L~l 303 (424)
|+|+.||-
T Consensus 140 P~Lk~LD~ 147 (175)
T PF14580_consen 140 PSLKVLDG 147 (175)
T ss_dssp TT-SEETT
T ss_pred ChhheeCC
Confidence 66666553
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.08 E-value=1.1e-10 Score=120.43 Aligned_cols=276 Identities=25% Similarity=0.253 Sum_probs=127.6
Q ss_pred CCCCEEeccCCcccccCccccCCCCCCCEEEccCCc--cCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcc
Q 042802 13 SKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNS--LTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLS 90 (424)
Q Consensus 13 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 90 (424)
...+.+.+.+|.+. ..+... .+++|++|-+.+|. +...+. ..|..++.|++|||++|.-.+.+|+.++.+
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~-----~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L- 594 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISG-----EFFRSLPLLRVLDLSGNSSLSKLPSSIGEL- 594 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCH-----HHHhhCcceEEEECCCCCccCcCChHHhhh-
Confidence 44455555555544 223222 23456666666664 333321 335566666666666665555666666666
Q ss_pred cccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcc--cccCChhhcCCcccceE
Q 042802 91 MSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKL--VGSFPDELCHLARLAEF 168 (424)
Q Consensus 91 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~--~~~~~~~l~~l~~L~~L 168 (424)
-+|++|++++..+. .+|..+.++.+|.+|++..+.-...+|.....+++|++|.+..... ....-..+..+..|+.+
T Consensus 595 i~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 595 VHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENL 673 (889)
T ss_pred hhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhh
Confidence 36666666666663 5566666666666666665554434444455566666666644321 11112223333333333
Q ss_pred eccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhcc--
Q 042802 169 VILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVG-- 246 (424)
Q Consensus 169 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-- 246 (424)
....... .+-..+..++.|..+.. .+.+..+.. ...+..+..+.+|+.|.+.++.+......+...
T Consensus 674 s~~~~s~--~~~e~l~~~~~L~~~~~---------~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~ 741 (889)
T KOG4658|consen 674 SITISSV--LLLEDLLGMTRLRSLLQ---------SLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLI 741 (889)
T ss_pred eeecchh--HhHhhhhhhHHHHHHhH---------hhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccccc
Confidence 3322111 00001111111111100 001000000 113344566777777777777765332222111
Q ss_pred ----CcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcc
Q 042802 247 ----LKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEG 310 (424)
Q Consensus 247 ----l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 310 (424)
++++..+...++..- ..+.+.--.++|+.|.+..+.....+.+....+..++.+-+..+.+.+
T Consensus 742 ~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 742 VLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred hhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 112222222222211 122222334677777777776665555555555555554454444443
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=2.4e-11 Score=105.62 Aligned_cols=224 Identities=20% Similarity=0.196 Sum_probs=143.1
Q ss_pred CCCCCEEeccCC--------cccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCC
Q 042802 12 ASKLTVLELGGN--------TFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLP 83 (424)
Q Consensus 12 ~~~L~~L~l~~n--------~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 83 (424)
+..|++|-.++. -+...+|..+.-+++|..+.++.+.-..+- .-...-+.|+++......+. ..|
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~------~~~~~kptl~t~~v~~s~~~-~~~ 253 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV------DIELLKPTLQTICVHNTTIQ-DVP 253 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee------ceeecCchhheeeeeccccc-ccc
Confidence 456777766643 112234555566778888888777544331 11112367778877665544 111
Q ss_pred hhHHhcccccceeEeec-CcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCC
Q 042802 84 SSIGNLSMSLKTLIIAN-CSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHL 162 (424)
Q Consensus 84 ~~~~~l~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 162 (424)
. +-.. ..+....-.. .-..|.....+.....|+++||++|.|+ .+..++.-.|.++.|++++|++.. + ..+..+
T Consensus 254 ~-l~pe-~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L 328 (490)
T KOG1259|consen 254 S-LLPE-TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAEL 328 (490)
T ss_pred c-ccch-hhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhc
Confidence 1 1111 1121111111 1112222233344567889999999988 677888888999999999998873 2 348888
Q ss_pred cccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccC-c
Q 042802 163 ARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDI-P 241 (424)
Q Consensus 163 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p 241 (424)
++|+.|++++|.++.. ..+=..+-+++.|.++.|.+..+ ..++++-+|..|++++|+|.... .
T Consensus 329 ~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~L---------------SGL~KLYSLvnLDl~~N~Ie~ldeV 392 (490)
T KOG1259|consen 329 PQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIETL---------------SGLRKLYSLVNLDLSSNQIEELDEV 392 (490)
T ss_pred ccceEeecccchhHhh-hhhHhhhcCEeeeehhhhhHhhh---------------hhhHhhhhheeccccccchhhHHHh
Confidence 9999999999987633 22234567788888888877653 23566778999999999987432 3
Q ss_pred hhhccCcCccEeeccCcccccc
Q 042802 242 ATIVGLKDLQFMDLAYNRSEGP 263 (424)
Q Consensus 242 ~~~~~l~~L~~L~ls~n~l~~~ 263 (424)
..++++|.|+.+.|.+|.+.+.
T Consensus 393 ~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 393 NHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred cccccccHHHHHhhcCCCcccc
Confidence 4688999999999999998843
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=5e-11 Score=108.74 Aligned_cols=85 Identities=27% Similarity=0.373 Sum_probs=37.7
Q ss_pred CcccEEECccCcccccCc--hhhccCcCccEeeccCccccccc-hhh-----hcCCCCCCEEECcCCCCCCCC-cccccC
Q 042802 224 KVLVRINLSKNNLSGDIP--ATIVGLKDLQFMDLAYNRSEGPI-PEL-----FGDLTSLEVLNLSKNKISGPI-PTSMEK 294 (424)
Q Consensus 224 ~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~ls~n~l~~~~-~~~-----l~~l~~L~~L~L~~n~l~~~~-~~~l~~ 294 (424)
..|+.|+|++|++- ..+ ...+.++.|+.|+++.+.+.... |+. ...+++|++|+++.|++...- -..+..
T Consensus 246 ~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~ 324 (505)
T KOG3207|consen 246 QTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT 324 (505)
T ss_pred hHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhc
Confidence 34455555555443 111 22344555555555555544221 111 233455666666666554211 122334
Q ss_pred CCCCCEEEcccccCc
Q 042802 295 LVYLRELNLSFNKLE 309 (424)
Q Consensus 295 l~~L~~L~l~~n~l~ 309 (424)
+++|+.+.+..|++.
T Consensus 325 l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 325 LENLKHLRITLNYLN 339 (505)
T ss_pred cchhhhhhccccccc
Confidence 455555555555554
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.02 E-value=2.5e-10 Score=117.84 Aligned_cols=256 Identities=23% Similarity=0.249 Sum_probs=153.0
Q ss_pred cCCCCCEEeccCCc--ccccCccccCCCCCCCEEEccCCc-cCCCCCcccccccccCCccCceeeccCccCCccCChhHH
Q 042802 11 NASKLTVLELGGNT--FSGFIPNTIGNLRNHEWLNLANNS-LTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIG 87 (424)
Q Consensus 11 ~~~~L~~L~l~~n~--~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 87 (424)
.+++|+.|-+.+|. +.......|..++.|++|||++|. +..+| ..++.+-+|++|+++++.+. .+|.+++
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP------~~I~~Li~LryL~L~~t~I~-~LP~~l~ 615 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP------SSIGELVHLRYLDLSDTGIS-HLPSGLG 615 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC------hHHhhhhhhhcccccCCCcc-ccchHHH
Confidence 45678888888885 554445557889999999999764 44556 78889999999999999988 8999999
Q ss_pred hcccccceeEeecCcCcccchhhhcCCcccceeecccCccc--cccCcccCCCCCCCeEEccCCcccccCChhhcCCccc
Q 042802 88 NLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLT--GPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARL 165 (424)
Q Consensus 88 ~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 165 (424)
++ ..|.+|++..+.....+|.....+++|++|.+...... ...-..+..+..|+.+....... .+-..+..+++|
T Consensus 616 ~L-k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L 692 (889)
T KOG4658|consen 616 NL-KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRL 692 (889)
T ss_pred HH-HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHH
Confidence 99 58999999988766666777778999999988765422 11222334455555554432221 111223333333
Q ss_pred c----eEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCccccccccccc-ccCcccEEECccCcccccC
Q 042802 166 A----EFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIG-NLKVLVRINLSKNNLSGDI 240 (424)
Q Consensus 166 ~----~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~ 240 (424)
. .+.+.++.. ...+..+..+.+|+.|.+.++...++..-.... .... .++++..+.+.++... ..
T Consensus 693 ~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~--------~~~~~~f~~l~~~~~~~~~~~-r~ 762 (889)
T KOG4658|consen 693 RSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEES--------LIVLLCFPNLSKVSILNCHML-RD 762 (889)
T ss_pred HHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccc--------cchhhhHHHHHHHHhhccccc-cc
Confidence 3 222222222 244556778889999999888876531100000 0000 1223333333333322 23
Q ss_pred chhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCC
Q 042802 241 PATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISG 286 (424)
Q Consensus 241 p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 286 (424)
+.+....++|+.|.+..+.....+.+....+..+..+-+..+.+.+
T Consensus 763 l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 763 LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred cchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 3444456777777777776554444444444555544444444443
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.96 E-value=6.8e-11 Score=114.10 Aligned_cols=128 Identities=27% Similarity=0.372 Sum_probs=60.2
Q ss_pred CCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCc
Q 042802 36 LRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLS 115 (424)
Q Consensus 36 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~ 115 (424)
+..++.+.+..|.+...- ..+..+++|..|++.+|.+.. +...+..+ .+|++|++++|.|.... .+..++
T Consensus 71 l~~l~~l~l~~n~i~~~~------~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~-~~L~~L~ls~N~I~~i~--~l~~l~ 140 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKIL------NHLSKLKSLEALDLYDNKIEK-IENLLSSL-VNLQVLDLSFNKITKLE--GLSTLT 140 (414)
T ss_pred hHhHHhhccchhhhhhhh------cccccccceeeeeccccchhh-cccchhhh-hcchheecccccccccc--chhhcc
Confidence 344444445555554421 234455555555555555552 22223333 35555555555554332 244445
Q ss_pred ccceeecccCccccccCcccCCCCCCCeEEccCCcccccCC-hhhcCCcccceEeccCCcCc
Q 042802 116 NLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP-DELCHLARLAEFVILGNKPS 176 (424)
Q Consensus 116 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~ 176 (424)
.|+.|++.+|.+.. + ..+..+..|+.+++++|++...-+ . ...+.+++.+++.+|.+.
T Consensus 141 ~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 141 LLKELNLSGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred chhhheeccCcchh-c-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 55555555555552 1 223345555555555555542222 1 344445555555555443
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.93 E-value=1.2e-10 Score=112.43 Aligned_cols=174 Identities=26% Similarity=0.315 Sum_probs=120.1
Q ss_pred cCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcc
Q 042802 11 NASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLS 90 (424)
Q Consensus 11 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 90 (424)
.+..++.+.+..|.+.. .-..+..+++|+.|++.+|.+..+. ..+..+++|+.|++++|.++.. ..+..+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~------~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~ 140 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE------NLLSSLVNLQVLDLSFNKITKL--EGLSTLT 140 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc------cchhhhhcchheeccccccccc--cchhhcc
Confidence 45667777788888774 3334778899999999999998874 2278899999999999999844 2355563
Q ss_pred cccceeEeecCcCcccchhhhcCCcccceeecccCccccccC-cccCCCCCCCeEEccCCcccccCChhhcCCcccceEe
Q 042802 91 MSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIP-ITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFV 169 (424)
Q Consensus 91 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 169 (424)
.|+.|++.+|.+... ..+..++.|+.+++++|.+....+ . ...+.+++.+++..|.+... ..+..+..+..+.
T Consensus 141 -~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~ 214 (414)
T KOG0531|consen 141 -LLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLS 214 (414)
T ss_pred -chhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhh
Confidence 699999999998643 356668999999999999985443 2 57788999999999987632 2333444444446
Q ss_pred ccCCcCccCCCccCCCCCC--CCEEEccCCCCCC
Q 042802 170 ILGNKPSGSIPSCLSNLTS--LRSLYLGSNSLKD 201 (424)
Q Consensus 170 l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~l~~ 201 (424)
+.+|.+...-+ +..++. |+.+++++|.+..
T Consensus 215 l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 215 LLDNKISKLEG--LNELVMLHLRELYLSGNRISR 246 (414)
T ss_pred cccccceeccC--cccchhHHHHHHhcccCcccc
Confidence 66666553322 122222 5555555555443
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=1.8e-09 Score=73.74 Aligned_cols=59 Identities=32% Similarity=0.487 Sum_probs=33.8
Q ss_pred cccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCC
Q 042802 225 VLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNK 283 (424)
Q Consensus 225 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 283 (424)
+|++|++++|+++...+..|..+++|++|++++|.++...+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444555555666666666666555555555555666666655554
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=3.2e-09 Score=72.53 Aligned_cols=59 Identities=34% Similarity=0.415 Sum_probs=36.0
Q ss_pred ccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCc
Q 042802 92 SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNK 150 (424)
Q Consensus 92 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 150 (424)
+|++|++++|++....+..|.++++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666655555566666666666666666665555556666666666666654
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.61 E-value=2.2e-09 Score=104.02 Aligned_cols=169 Identities=28% Similarity=0.358 Sum_probs=114.2
Q ss_pred ChhhcCCcccceEeccCCcCccCCCccCCCC-CCCCEEEccCCCCCC--------------------ceeeeccCCcccc
Q 042802 156 PDELCHLARLAEFVILGNKPSGSIPSCLSNL-TSLRSLYLGSNSLKD--------------------ILFFDFSSNFLVG 214 (424)
Q Consensus 156 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~--------------------i~~l~l~~n~~~~ 214 (424)
|-.+..+.+|+.|.+.++.+... ..+..+ ..|+.| |..|.++. +...+++.|++.-
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKL-ICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL 178 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhh-hhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh
Confidence 55667778899999988877531 111111 123333 11222111 2444566665543
Q ss_pred cccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchh-hhcCCCCCCEEECcCCCCCCCCccccc
Q 042802 215 PLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPE-LFGDLTSLEVLNLSKNKISGPIPTSME 293 (424)
Q Consensus 215 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~ 293 (424)
....+.-++.|+.|+|++|+++.. +.+..++.|++|||++|.++ .+|. ...++. |..|.+++|.++.. ..+.
T Consensus 179 -mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 179 -MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred -HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHH
Confidence 345567788999999999999854 36788999999999999998 4442 233444 99999999999743 3577
Q ss_pred CCCCCCEEEcccccCcccC--CCCCcccccccccccCCcCCcC
Q 042802 294 KLVYLRELNLSFNKLEGEI--PSGGIFTSFIAESFMGNELLCG 334 (424)
Q Consensus 294 ~l~~L~~L~l~~n~l~~~~--p~~~~~~~l~~~~~~~n~~lc~ 334 (424)
++.+|+.||+++|-+.+.- .....+..+..+.+.|||..|.
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 8999999999999887532 2224556677888999997774
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=6.2e-09 Score=90.74 Aligned_cols=226 Identities=19% Similarity=0.145 Sum_probs=123.7
Q ss_pred CceeeccCccCCcc-CChhHHhcccccceeEeecCcCcc--cchhhhcCCcccceeecccCccccccCcccCCCCCCCeE
Q 042802 68 LRNINLIGNPLDGF-LPSSIGNLSMSLKTLIIANCSIIG--NIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGL 144 (424)
Q Consensus 68 L~~L~l~~n~~~~~-~~~~~~~l~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 144 (424)
++.+.+.++.+... ....++....+++++||.+|.++. .+...+.++|.|++|+++.|.+...+...-....+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 33444444444322 123455544577777777777742 233345677788888888887764332221355677777
Q ss_pred EccCCcccc-cCChhhcCCcccceEeccCCcCccCCCc--cCC-CCCCCCEEEccCCCCCCceeeeccCCcccccccccc
Q 042802 145 DLAFNKLVG-SFPDELCHLARLAEFVILGNKPSGSIPS--CLS-NLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDI 220 (424)
Q Consensus 145 ~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~--~l~-~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l 220 (424)
.|.+..+.- .....+..+|.++.|.++.|.......+ ... ..+.+++|..-.|.... ..+-|++.
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~----w~~~~~l~------- 195 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL----WLNKNKLS------- 195 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH----HHHHHhHH-------
Confidence 776665531 2233455666777777766643321111 011 11233333333332111 01111111
Q ss_pred cccCcccEEECccCcccccC-chhhccCcCccEeeccCccccccc-hhhhcCCCCCCEEECcCCCCCCCCc------ccc
Q 042802 221 GNLKVLVRINLSKNNLSGDI-PATIVGLKDLQFMDLAYNRSEGPI-PELFGDLTSLEVLNLSKNKISGPIP------TSM 292 (424)
Q Consensus 221 ~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~------~~l 292 (424)
..+|++..+-+..|.+.... ...+..++.+..|+|+.+++.... .+++..++.|..|.+++|++...+. -.+
T Consensus 196 r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llI 275 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLI 275 (418)
T ss_pred hhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEE
Confidence 12466777777777665322 223455677778899998886432 3668889999999999998874432 124
Q ss_pred cCCCCCCEEEcc
Q 042802 293 EKLVYLRELNLS 304 (424)
Q Consensus 293 ~~l~~L~~L~l~ 304 (424)
+.+++++.|+=+
T Consensus 276 aRL~~v~vLNGs 287 (418)
T KOG2982|consen 276 ARLTKVQVLNGS 287 (418)
T ss_pred eeccceEEecCc
Confidence 567777777644
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.52 E-value=9.3e-10 Score=106.48 Aligned_cols=103 Identities=28% Similarity=0.328 Sum_probs=60.0
Q ss_pred ccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCCh-hhcCCcccceEec
Q 042802 92 SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPD-ELCHLARLAEFVI 170 (424)
Q Consensus 92 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~l 170 (424)
.|.+.+.++|.+. ..-.++.-++.|+.|+|++|+++.. +.+..|++|++|||++|++. .+|. ....+ +|+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeee
Confidence 4556666666663 3344566666777777777776632 25666777777777777765 3332 22222 3666666
Q ss_pred cCCcCccCCCccCCCCCCCCEEEccCCCCCC
Q 042802 171 LGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD 201 (424)
Q Consensus 171 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 201 (424)
++|.++... .+.++.+|+.||+++|-+.+
T Consensus 240 rnN~l~tL~--gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 240 RNNALTTLR--GIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred cccHHHhhh--hHHhhhhhhccchhHhhhhc
Confidence 666655322 34556666666666665554
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=8.4e-09 Score=89.96 Aligned_cols=84 Identities=24% Similarity=0.333 Sum_probs=34.4
Q ss_pred CccCceeeccCccCCc--cCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCcccccc-CcccCCCCCC
Q 042802 65 CKKLRNINLIGNPLDG--FLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPI-PITFGRLQKL 141 (424)
Q Consensus 65 l~~L~~L~l~~n~~~~--~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L 141 (424)
+++++.+||.+|.+.. .+-.-+.++| .|++|+++.|.+...+-..-....+|++|-|.+..+.... ...+..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP-~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLP-ALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCc-cceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 3445555555554431 1111222332 4555555555544332211123344555555444443221 1223344555
Q ss_pred CeEEccCC
Q 042802 142 QGLDLAFN 149 (424)
Q Consensus 142 ~~L~L~~n 149 (424)
+.|+++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 55555554
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.44 E-value=1e-07 Score=82.28 Aligned_cols=168 Identities=17% Similarity=0.161 Sum_probs=97.9
Q ss_pred cCCCCCCCeEEccCCcccccCCh----hhcCCcccceEeccCCcCccCCCc-------------cCCCCCCCCEEEccCC
Q 042802 135 FGRLQKLQGLDLAFNKLVGSFPD----ELCHLARLAEFVILGNKPSGSIPS-------------CLSNLTSLRSLYLGSN 197 (424)
Q Consensus 135 ~~~l~~L~~L~L~~n~~~~~~~~----~l~~l~~L~~L~l~~n~~~~~~~~-------------~l~~l~~L~~L~l~~n 197 (424)
+-+||+|+.++|++|.+....|. .+++-+.|++|++++|.+...... -..+-|.|+.+....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 44566666666666666544443 335556666777666655422111 1234577888888888
Q ss_pred CCCCceeeeccCCcccccccccccccCcccEEECccCcccccCch-----hhccCcCccEeeccCcccccc----chhhh
Q 042802 198 SLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPA-----TIVGLKDLQFMDLAYNRSEGP----IPELF 268 (424)
Q Consensus 198 ~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-----~~~~l~~L~~L~ls~n~l~~~----~~~~l 268 (424)
++..-. .......+.....|+.+.+..|.|.-.... .+..+.+|+.||+.+|-++-. +...+
T Consensus 168 Rlengs---------~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 168 RLENGS---------KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred hhccCc---------HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence 775410 000112233345788888888877632211 234577888888888877633 23445
Q ss_pred cCCCCCCEEECcCCCCCCCCcccc------cCCCCCCEEEcccccCccc
Q 042802 269 GDLTSLEVLNLSKNKISGPIPTSM------EKLVYLRELNLSFNKLEGE 311 (424)
Q Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~l------~~l~~L~~L~l~~n~l~~~ 311 (424)
...+.|+.|.+..|.++......+ ...|+|..|...+|...+.
T Consensus 239 ~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 239 CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 556778888888888775433221 1346677777777766544
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=5.3e-09 Score=91.23 Aligned_cols=177 Identities=19% Similarity=0.150 Sum_probs=97.9
Q ss_pred ccceeecccCcccc-ccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcC-ccC-CCccCCCCCCCCEE
Q 042802 116 NLLALTLEGNKLTG-PIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKP-SGS-IPSCLSNLTSLRSL 192 (424)
Q Consensus 116 ~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~-~~~-~~~~l~~l~~L~~L 192 (424)
.|+++||+...++. .+-..+..|.+|+.|.+.++++...+...+..-..|+.|+++.+.- +.. ..-.+.+|+.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46666666655542 1222345566666666666666655555666666666666665432 111 11234566777777
Q ss_pred EccCCCCCCceeeeccCCcccccccccccccCcccEEECccCc--cc-ccCchhhccCcCccEeeccCcc-ccccchhhh
Q 042802 193 YLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNN--LS-GDIPATIVGLKDLQFMDLAYNR-SEGPIPELF 268 (424)
Q Consensus 193 ~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~--l~-~~~p~~~~~l~~L~~L~ls~n~-l~~~~~~~l 268 (424)
+++.|.+..-. . ..+...+ -++|+.|+++|+. +. ..+..-...+++|..|||++|. ++......|
T Consensus 266 NlsWc~l~~~~--------V-tv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 266 NLSWCFLFTEK--------V-TVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 334 (419)
T ss_pred CchHhhccchh--------h-hHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence 77766554310 0 0000011 1456777777763 11 1122223467788888888764 333344556
Q ss_pred cCCCCCCEEECcCCCCCCCCcc---cccCCCCCCEEEccc
Q 042802 269 GDLTSLEVLNLSKNKISGPIPT---SMEKLVYLRELNLSF 305 (424)
Q Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l~~ 305 (424)
..++.|++|.++.|.. .+|. .+...|+|.+||+-+
T Consensus 335 ~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 7778888888877754 3343 345677888888764
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.37 E-value=2e-08 Score=77.61 Aligned_cols=110 Identities=24% Similarity=0.256 Sum_probs=70.0
Q ss_pred CCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcc
Q 042802 37 RNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSN 116 (424)
Q Consensus 37 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~ 116 (424)
..+..++|+.|.+-.+++.. ..+....+|+..+|++|.+. .+|+.|...++.+++|++.+|.+. .+|..+..++.
T Consensus 27 kE~h~ldLssc~lm~i~dav---y~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~a 101 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAV---YMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPA 101 (177)
T ss_pred HHhhhcccccchhhHHHHHH---HHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHH
Confidence 34455666666555443211 23444456666777777776 566666665556777777777773 55666777777
Q ss_pred cceeecccCccccccCcccCCCCCCCeEEccCCccc
Q 042802 117 LLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLV 152 (424)
Q Consensus 117 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~ 152 (424)
|+.|+++.|.+. ..|.-+..+.++-.|+..+|.+.
T Consensus 102 Lr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 102 LRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 777777777777 55666666777777777777665
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.35 E-value=1.3e-07 Score=81.54 Aligned_cols=145 Identities=21% Similarity=0.305 Sum_probs=88.2
Q ss_pred hhhcCCCCCEEeccCCcccccCc----cccCCCCCCCEEEccCCccCCC----CC-cccccccccCCccCceeeccCccC
Q 042802 8 SITNASKLTVLELGGNTFSGFIP----NTIGNLRNHEWLNLANNSLTSS----TS-KLSFLSSLANCKKLRNINLIGNPL 78 (424)
Q Consensus 8 ~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~----~~-~~~~~~~l~~l~~L~~L~l~~n~~ 78 (424)
.+..+..++.+++|+|.+...-. ..+++-++|+..++++-..... +. -..+..++.+|++|+..+|+.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 44567889999999999875433 3456678888888877543322 11 123346778899999999999998
Q ss_pred CccCChhHHhc---ccccceeEeecCcCcccchhhh-------------cCCcccceeecccCccccc----cCcccCCC
Q 042802 79 DGFLPSSIGNL---SMSLKTLIIANCSIIGNIRRAI-------------GNLSNLLALTLEGNKLTGP----IPITFGRL 138 (424)
Q Consensus 79 ~~~~~~~~~~l---~~~L~~L~l~~n~l~~~~~~~l-------------~~l~~L~~L~l~~n~l~~~----~p~~~~~l 138 (424)
....|+.++.+ ...|.+|.+.+|.+-...-..+ .+-|.|+++....|++..- ....+..-
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 87777655433 2468889998887632211111 2235566666666655411 01112233
Q ss_pred CCCCeEEccCCccc
Q 042802 139 QKLQGLDLAFNKLV 152 (424)
Q Consensus 139 ~~L~~L~L~~n~~~ 152 (424)
..|+.+.+..|.+.
T Consensus 185 ~~lk~vki~qNgIr 198 (388)
T COG5238 185 ENLKEVKIQQNGIR 198 (388)
T ss_pred cCceeEEeeecCcC
Confidence 45555555555543
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2e-08 Score=87.67 Aligned_cols=180 Identities=19% Similarity=0.194 Sum_probs=102.3
Q ss_pred CCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCc-Cccc-chhhhcCCc
Q 042802 38 NHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCS-IIGN-IRRAIGNLS 115 (424)
Q Consensus 38 ~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~-l~~~-~~~~l~~l~ 115 (424)
.|+++||+...++... ...-+..|.+|+.|.+.++.+...+-..+++- .+|+.|+++.+. ++.. ..-.+.+++
T Consensus 186 Rlq~lDLS~s~it~st----l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVST----LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHH----HHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhh
Confidence 4777777776665421 11335567777777777777776666667666 477777777654 2211 112356677
Q ss_pred ccceeecccCccccccCcc-cCC-CCCCCeEEccCCccc---ccCChhhcCCcccceEeccCCcC-ccCCCccCCCCCCC
Q 042802 116 NLLALTLEGNKLTGPIPIT-FGR-LQKLQGLDLAFNKLV---GSFPDELCHLARLAEFVILGNKP-SGSIPSCLSNLTSL 189 (424)
Q Consensus 116 ~L~~L~l~~n~l~~~~p~~-~~~-l~~L~~L~L~~n~~~---~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~l~~l~~L 189 (424)
.|..|+++++.+....-.. +.. -++|+.|++++++-. ..+..-...+++|.+|+++++.. +...-..|..++.|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 7777777777665222111 111 245666777765432 11112234567777777776542 22222345666777
Q ss_pred CEEEccCCCCCCceeeeccCCcccccccc---cccccCcccEEECccCccc
Q 042802 190 RSLYLGSNSLKDILFFDFSSNFLVGPLSL---DIGNLKVLVRINLSKNNLS 237 (424)
Q Consensus 190 ~~L~l~~n~l~~i~~l~l~~n~~~~~~~~---~l~~l~~L~~L~l~~n~l~ 237 (424)
++|.++.|..- +|. .+..+|.|.+|++.|+--.
T Consensus 341 ~~lSlsRCY~i---------------~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 341 QHLSLSRCYDI---------------IPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred eeeehhhhcCC---------------ChHHeeeeccCcceEEEEeccccCc
Confidence 77777766421 222 3455677888888777533
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=5.9e-07 Score=69.65 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=71.1
Q ss_pred CCCEEeccCCcccccCc---cccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcc
Q 042802 14 KLTVLELGGNTFSGFIP---NTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLS 90 (424)
Q Consensus 14 ~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 90 (424)
.+-.+||+.|.+- .++ ..+....+|+..+|++|.+..+|. ..-...+.++.|++.+|.+. .+|..+..++
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~-----kft~kf~t~t~lNl~~neis-dvPeE~Aam~ 100 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPK-----KFTIKFPTATTLNLANNEIS-DVPEELAAMP 100 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCH-----HHhhccchhhhhhcchhhhh-hchHHHhhhH
Confidence 4556677777654 222 234455667777888888777762 22234457777888888777 6777777774
Q ss_pred cccceeEeecCcCcccchhhhcCCcccceeecccCccc
Q 042802 91 MSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLT 128 (424)
Q Consensus 91 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 128 (424)
.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+.
T Consensus 101 -aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 101 -ALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred -HhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 7888888887774 45666666777777777777766
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.09 E-value=1.3e-05 Score=75.07 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=24.8
Q ss_pred CCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecC
Q 042802 36 LRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANC 101 (424)
Q Consensus 36 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n 101 (424)
+.+++.|++++|.++.+|. + ..+|+.|.+++|.-...+|+.+ +.+|++|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~-------L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV-------L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccCC-------C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 4555555555555554431 0 1235555555433222444332 234555555555
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=4.5e-06 Score=52.18 Aligned_cols=39 Identities=36% Similarity=0.567 Sum_probs=27.6
Q ss_pred CCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCC
Q 042802 13 SKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSS 52 (424)
Q Consensus 13 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 52 (424)
++|++|++++|.++. +|..++++++|++|++++|.++++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCC
Confidence 467888888888874 454578888888888888877765
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.02 E-value=9.4e-06 Score=67.37 Aligned_cols=104 Identities=24% Similarity=0.296 Sum_probs=53.3
Q ss_pred CCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccc
Q 042802 141 LQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDI 220 (424)
Q Consensus 141 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l 220 (424)
...+||++|.+.. -..|..+++|.+|.+.+|.++...|..-..+++|+.|.+.+|++.++..++ .+
T Consensus 44 ~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~------------pL 109 (233)
T KOG1644|consen 44 FDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD------------PL 109 (233)
T ss_pred cceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc------------hh
Confidence 3445555554431 123444555555555555555444444444556666666666655532111 24
Q ss_pred cccCcccEEECccCcccccCc---hhhccCcCccEeeccCc
Q 042802 221 GNLKVLVRINLSKNNLSGDIP---ATIVGLKDLQFMDLAYN 258 (424)
Q Consensus 221 ~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~ls~n 258 (424)
..+|.|++|.+-+|.....-- ..+..+++|+.||++.-
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 556677777777776552211 13445666666666553
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=2.7e-05 Score=73.02 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=23.8
Q ss_pred ccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCC
Q 042802 92 SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFN 149 (424)
Q Consensus 92 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 149 (424)
++++|++++|.+. .+|. --++|++|.++++.--..+|..+ ..+|+.|++++|
T Consensus 53 ~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred CCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 5666666666543 2331 11246666665532212344332 134555555555
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.94 E-value=1.9e-05 Score=65.65 Aligned_cols=124 Identities=24% Similarity=0.288 Sum_probs=68.3
Q ss_pred CEEeccCCcccccCccccC-CCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccc
Q 042802 16 TVLELGGNTFSGFIPNTIG-NLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLK 94 (424)
Q Consensus 16 ~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~ 94 (424)
+.+++.+.++..... ++ ...+...+||++|.+... ..|..++.|..|.+.+|.++ .+...+..+.++|.
T Consensus 22 ~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~l-------~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~ 91 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRKL-------DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLK 91 (233)
T ss_pred cccccccccccchhh--ccccccccceecccccchhhc-------ccCCCccccceEEecCCcce-eeccchhhhccccc
Confidence 455555554431111 11 234566677777776655 34666677777777777777 34444544444677
Q ss_pred eeEeecCcCcccc-hhhhcCCcccceeecccCccccccC---cccCCCCCCCeEEccCC
Q 042802 95 TLIIANCSIIGNI-RRAIGNLSNLLALTLEGNKLTGPIP---ITFGRLQKLQGLDLAFN 149 (424)
Q Consensus 95 ~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~L~~n 149 (424)
.|.+.+|.+.... -+.+..+|+|++|.+-+|.++..-- --+..+++|+.||...-
T Consensus 92 ~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 92 TLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7777777664321 1235566677777766666652110 12445566666665543
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=2.1e-05 Score=49.20 Aligned_cols=36 Identities=42% Similarity=0.615 Sum_probs=15.3
Q ss_pred CccEeeccCccccccchhhhcCCCCCCEEECcCCCCC
Q 042802 249 DLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKIS 285 (424)
Q Consensus 249 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 285 (424)
+|++|++++|+++ .+|..++.+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444444
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.68 E-value=0.0001 Score=58.61 Aligned_cols=60 Identities=28% Similarity=0.406 Sum_probs=25.3
Q ss_pred hhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeecc
Q 042802 8 SITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLI 74 (424)
Q Consensus 8 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~ 74 (424)
.|..+++|+.+.+.. .+.......|.++++|+.+.+.++ +..++. .+|..+++|+.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~-----~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGD-----NAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-T-----TTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccce-----eeeeccccccccccc
Confidence 445555666666553 344344455555555666665443 444432 345555555555554
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.66 E-value=2.4e-05 Score=79.44 Aligned_cols=150 Identities=21% Similarity=0.248 Sum_probs=89.3
Q ss_pred CCCCEEeccCCcc-cccCccccC-CCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcc
Q 042802 13 SKLTVLELGGNTF-SGFIPNTIG-NLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLS 90 (424)
Q Consensus 13 ~~L~~L~l~~n~~-~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 90 (424)
.+|+.||+++... ...+|..++ .+|.|+.|.+++-.+.... |..-..++++|..||++++.++.. .+++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d----F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L- 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD----FSQLCASFPNLRSLDISGTNISNL--SGISRL- 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh----HHHHhhccCccceeecCCCCccCc--HHHhcc-
Confidence 5678888877643 334444444 5688888888776654421 224456777888888888877733 667777
Q ss_pred cccceeEeecCcCcc-cchhhhcCCcccceeecccCcccccc------CcccCCCCCCCeEEccCCcccccCChh-hcCC
Q 042802 91 MSLKTLIIANCSIIG-NIRRAIGNLSNLLALTLEGNKLTGPI------PITFGRLQKLQGLDLAFNKLVGSFPDE-LCHL 162 (424)
Q Consensus 91 ~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~------p~~~~~l~~L~~L~L~~n~~~~~~~~~-l~~l 162 (424)
++|+.|.+.+-.+.. ..-..+.++.+|+.||+|........ -+.-..+|+|+.||.++..+.+..-+. +...
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH 274 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH 274 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC
Confidence 478887777655543 22235667788888888875543111 111234677777777776665433222 2233
Q ss_pred cccceEe
Q 042802 163 ARLAEFV 169 (424)
Q Consensus 163 ~~L~~L~ 169 (424)
++|+.+.
T Consensus 275 ~~L~~i~ 281 (699)
T KOG3665|consen 275 PNLQQIA 281 (699)
T ss_pred ccHhhhh
Confidence 4444443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=3e-05 Score=78.73 Aligned_cols=134 Identities=22% Similarity=0.328 Sum_probs=80.6
Q ss_pred ccCceeeccCccC-CccCChhHHhcccccceeEeecCcCcc-cchhhhcCCcccceeecccCccccccCcccCCCCCCCe
Q 042802 66 KKLRNINLIGNPL-DGFLPSSIGNLSMSLKTLIIANCSIIG-NIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQG 143 (424)
Q Consensus 66 ~~L~~L~l~~n~~-~~~~~~~~~~l~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 143 (424)
.+|+.|++++... ....|..++.+.++|+.|.+.+-.+.. .+-....++|+|..||+++.+++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 5677778776543 334556666666688888887655532 2233445778888888888777733 55677777777
Q ss_pred EEccCCcccc-cCChhhcCCcccceEeccCCcCccCC------CccCCCCCCCCEEEccCCCCCC
Q 042802 144 LDLAFNKLVG-SFPDELCHLARLAEFVILGNKPSGSI------PSCLSNLTSLRSLYLGSNSLKD 201 (424)
Q Consensus 144 L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~------~~~l~~l~~L~~L~l~~n~l~~ 201 (424)
|.+.+=.+.. ..-..+..+++|+.|+++........ -+.-..+|+|+.||.+++.+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7776654442 11234566777777777765433211 0122336677777776665443
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.54 E-value=0.00023 Score=56.53 Aligned_cols=124 Identities=20% Similarity=0.304 Sum_probs=56.1
Q ss_pred ccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchh
Q 042802 30 PNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRR 109 (424)
Q Consensus 30 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~ 109 (424)
...|.++++|+.+.+.. .+..++. .+|..+++|+.+.+.++ +...-...+..+ .+++.+.+.. .+......
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~-----~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~-~~l~~i~~~~-~~~~i~~~ 75 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGE-----NAFSNCTSLKSINFPNN-LTSIGDNAFSNC-KSLESITFPN-NLKSIGDN 75 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-T-----TTTTT-TT-SEEEESST-TSCE-TTTTTT--TT-EEEEETS-TT-EE-TT
T ss_pred HHHHhCCCCCCEEEECC-CeeEeCh-----hhccccccccccccccc-ccccceeeeecc-cccccccccc-cccccccc
Confidence 34677777888888764 4555543 56777777888777664 443333444444 3677777754 33334445
Q ss_pred hhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCccc
Q 042802 110 AIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARL 165 (424)
Q Consensus 110 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 165 (424)
.|..+++|+.+++..+ +...-...|.++ .|+.+.+.. .+.......|.++++|
T Consensus 76 ~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 5666777777777654 443444556665 666666654 2222333444444443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.21 E-value=0.00018 Score=62.43 Aligned_cols=61 Identities=25% Similarity=0.303 Sum_probs=27.2
Q ss_pred CCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCc--cCCccCChhHHhcccccceeEeecCcC
Q 042802 35 NLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGN--PLDGFLPSSIGNLSMSLKTLIIANCSI 103 (424)
Q Consensus 35 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~~L~~L~l~~n~l 103 (424)
.+..|+.|.+.+..++++ ..+-.+++|+.|.++.| .+.+.++.-...+ ++|++|++++|++
T Consensus 41 ~~~~le~ls~~n~gltt~-------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~-P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKA-PNLKVLNLSGNKI 103 (260)
T ss_pred cccchhhhhhhccceeec-------ccCCCcchhhhhcccCCcccccccceehhhhC-CceeEEeecCCcc
Confidence 344455555555444443 23444555555555555 3332222222223 2444444444444
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=2.5e-05 Score=68.08 Aligned_cols=100 Identities=24% Similarity=0.342 Sum_probs=68.7
Q ss_pred cCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCC--hhHHh
Q 042802 11 NASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLP--SSIGN 88 (424)
Q Consensus 11 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~ 88 (424)
.+.+.+.|+.+++.++++. ...+|+.|++|.|+-|+++++ ..+..|++|+.|+|..|.|.. +. ..+.+
T Consensus 17 dl~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL-------~pl~rCtrLkElYLRkN~I~s-ldEL~YLkn 86 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL-------APLQRCTRLKELYLRKNCIES-LDELEYLKN 86 (388)
T ss_pred HHHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc-------hhHHHHHHHHHHHHHhccccc-HHHHHHHhc
Confidence 3556778888888887432 245788899999999998887 558888899999998888762 22 23445
Q ss_pred cccccceeEeecCcCcccch-----hhhcCCcccceee
Q 042802 89 LSMSLKTLIIANCSIIGNIR-----RAIGNLSNLLALT 121 (424)
Q Consensus 89 l~~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~ 121 (424)
++ +|+.|.|..|.=.+..+ ..+.-+|+|+.||
T Consensus 87 lp-sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LP-SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred Cc-hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 53 77888887765444332 2345566666664
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.14 E-value=0.00027 Score=61.33 Aligned_cols=84 Identities=20% Similarity=0.235 Sum_probs=51.4
Q ss_pred ccccCcccEEECccC--cccccCchhhccCcCccEeeccCccccccchhh---hcCCCCCCEEECcCCCCCCCCc---cc
Q 042802 220 IGNLKVLVRINLSKN--NLSGDIPATIVGLKDLQFMDLAYNRSEGPIPEL---FGDLTSLEVLNLSKNKISGPIP---TS 291 (424)
Q Consensus 220 l~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~---~~ 291 (424)
+..+++|++|.++.| .+.+.++.....+++|+++++++|++.. +.. +..+.+|..|++.+|..+..-. ..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~v 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKV 138 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHH
Confidence 445667777777777 5555555555566777777777777652 222 3445667778888877665321 23
Q ss_pred ccCCCCCCEEEccc
Q 042802 292 MEKLVYLRELNLSF 305 (424)
Q Consensus 292 l~~l~~L~~L~l~~ 305 (424)
+.-+++|++||-..
T Consensus 139 f~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCD 152 (260)
T ss_pred HHHhhhhccccccc
Confidence 44567777766543
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.51 E-value=0.00031 Score=69.44 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=18.8
Q ss_pred ccEeeccCcccccc-chhhhcC-CCCCCEEECcCCCCC
Q 042802 250 LQFMDLAYNRSEGP-IPELFGD-LTSLEVLNLSKNKIS 285 (424)
Q Consensus 250 L~~L~ls~n~l~~~-~~~~l~~-l~~L~~L~L~~n~l~ 285 (424)
++.|+++.+..... .-..... ...+..+++.++...
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 67777777654321 1111111 556666776666543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.0002 Score=62.55 Aligned_cols=83 Identities=23% Similarity=0.174 Sum_probs=42.4
Q ss_pred CCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccc-hhhhcCC
Q 042802 36 LRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNI-RRAIGNL 114 (424)
Q Consensus 36 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~-~~~l~~l 114 (424)
+.+.+.|+.-++.++++ .-..+|+.|++|.|+-|+++.. ..+..+ .+|++|+|..|.|.... -..+.++
T Consensus 18 l~~vkKLNcwg~~L~DI-------sic~kMp~lEVLsLSvNkIssL--~pl~rC-trLkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-------SICEKMPLLEVLSLSVNKISSL--APLQRC-TRLKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HHHhhhhcccCCCccHH-------HHHHhcccceeEEeeccccccc--hhHHHH-HHHHHHHHHhcccccHHHHHHHhcC
Confidence 34455566666665554 2344556666666666666522 223344 35666666666553221 1234455
Q ss_pred cccceeecccCccc
Q 042802 115 SNLLALTLEGNKLT 128 (424)
Q Consensus 115 ~~L~~L~l~~n~l~ 128 (424)
++|+.|+|..|.=.
T Consensus 88 psLr~LWL~ENPCc 101 (388)
T KOG2123|consen 88 PSLRTLWLDENPCC 101 (388)
T ss_pred chhhhHhhccCCcc
Confidence 55555555555433
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.22 E-value=0.00018 Score=66.35 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=26.4
Q ss_pred CCccCceeeccCcc-CCccCChhHHhcccccceeEeecCc-Ccccchh-hhcCCcccceeecccC
Q 042802 64 NCKKLRNINLIGNP-LDGFLPSSIGNLSMSLKTLIIANCS-IIGNIRR-AIGNLSNLLALTLEGN 125 (424)
Q Consensus 64 ~l~~L~~L~l~~n~-~~~~~~~~~~~l~~~L~~L~l~~n~-l~~~~~~-~l~~l~~L~~L~l~~n 125 (424)
++++++.|.+.++. ++...-.+++..+.+|++|++..|. ++...-. --..+++|++++++++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWC 226 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccC
Confidence 45555555555443 2222223333333455555555532 2211111 1224555555555554
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.68 E-value=0.0058 Score=31.66 Aligned_cols=21 Identities=38% Similarity=0.722 Sum_probs=12.8
Q ss_pred CCCEEeccCCcccccCccccCC
Q 042802 14 KLTVLELGGNTFSGFIPNTIGN 35 (424)
Q Consensus 14 ~L~~L~l~~n~~~~~~~~~~~~ 35 (424)
+|++||+++|.++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4667777777666 45554544
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.38 E-value=0.0036 Score=61.88 Aligned_cols=134 Identities=22% Similarity=0.233 Sum_probs=78.3
Q ss_pred cCCCCCEEeccCCccccc--CccccCCCCCCCEEEccCC-ccCCC-CCcccccccccCCccCceeeccCcc-CCccCChh
Q 042802 11 NASKLTVLELGGNTFSGF--IPNTIGNLRNHEWLNLANN-SLTSS-TSKLSFLSSLANCKKLRNINLIGNP-LDGFLPSS 85 (424)
Q Consensus 11 ~~~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~ 85 (424)
.++.|+.+.+.++.-... .-.....+++|+.|+++++ ..... +.. .......+++|+.|+++++. ++...-..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL--LLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH--hhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 468888888887743322 2234457888999998873 21111 110 01234456888888888877 55454455
Q ss_pred HHhcccccceeEeecCc-Ccccch-hhhcCCcccceeecccCcccc--ccCcccCCCCCCCeEEc
Q 042802 86 IGNLSMSLKTLIIANCS-IIGNIR-RAIGNLSNLLALTLEGNKLTG--PIPITFGRLQKLQGLDL 146 (424)
Q Consensus 86 ~~~l~~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~L 146 (424)
++..+++|++|.+.+|. ++...- .....++.|++|+++++.... .+......+++|+.|.+
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 55533588888877776 443322 233467888999888765431 12222344565555544
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.13 E-value=0.013 Score=30.36 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=5.3
Q ss_pred ccEeeccCcccc
Q 042802 250 LQFMDLAYNRSE 261 (424)
Q Consensus 250 L~~L~ls~n~l~ 261 (424)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.48 E-value=0.002 Score=55.07 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=52.2
Q ss_pred cccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCC
Q 042802 61 SLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQK 140 (424)
Q Consensus 61 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 140 (424)
.+......+.||++.|.+. .+-..+..+ ..+..|+++.|++ ...|..+..+..+..+++..|..+ ..|.+++..+.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~-t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSIL-TRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHH-HHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 3444455555666555544 233334444 2566666666665 345566666666666666666666 66777777777
Q ss_pred CCeEEccCCccc
Q 042802 141 LQGLDLAFNKLV 152 (424)
Q Consensus 141 L~~L~L~~n~~~ 152 (424)
++++++-.|.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 777777766543
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.38 E-value=0.00021 Score=69.54 Aligned_cols=15 Identities=40% Similarity=0.581 Sum_probs=7.7
Q ss_pred CCCCEEEccCCCCCC
Q 042802 187 TSLRSLYLGSNSLKD 201 (424)
Q Consensus 187 ~~L~~L~l~~n~l~~ 201 (424)
..++.++++.|.+++
T Consensus 262 ~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITE 276 (478)
T ss_pred hhhhhhhhhcCCccc
Confidence 444555555555544
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.20 E-value=0.032 Score=26.77 Aligned_cols=11 Identities=45% Similarity=0.537 Sum_probs=3.4
Q ss_pred CCEEEccCCcc
Q 042802 39 HEWLNLANNSL 49 (424)
Q Consensus 39 L~~L~l~~n~l 49 (424)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.31 E-value=0.00065 Score=66.19 Aligned_cols=36 Identities=33% Similarity=0.345 Sum_probs=20.0
Q ss_pred cceeEeecCcCcccch----hhhcCCcccceeecccCccc
Q 042802 93 LKTLIIANCSIIGNIR----RAIGNLSNLLALTLEGNKLT 128 (424)
Q Consensus 93 L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~ 128 (424)
+..+++.+|.+..... ..+...+.|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 5556666666643322 23344566666666666655
No 76
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=92.36 E-value=0.3 Score=28.71 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 042802 362 VIVFPLSIALTIAITLPLK 380 (424)
Q Consensus 362 ~i~~~~~~~~~~~~~~~~~ 380 (424)
++++++++.+++.++++++
T Consensus 7 aIIv~V~vg~~iiii~~~~ 25 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFY 25 (38)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4555555544444444343
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.20 E-value=0.0096 Score=51.01 Aligned_cols=89 Identities=12% Similarity=0.143 Sum_probs=53.9
Q ss_pred cccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhh
Q 042802 31 NTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRA 110 (424)
Q Consensus 31 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~ 110 (424)
..+..+...+.||++.|++.... ..|..++.|..|+++.|.+. .+|..++.. ..++.+++..|.. ...|.+
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~------~n~s~~t~~~rl~~sknq~~-~~~~d~~q~-~e~~~~~~~~n~~-~~~p~s 106 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLG------KNFSILTRLVRLDLSKNQIK-FLPKDAKQQ-RETVNAASHKNNH-SQQPKS 106 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhc------cchHHHHHHHHHhccHhhHh-hChhhHHHH-HHHHHHHhhccch-hhCCcc
Confidence 34555666666666666665554 44555566666666666665 566666665 3566666665555 355666
Q ss_pred hcCCcccceeecccCccc
Q 042802 111 IGNLSNLLALTLEGNKLT 128 (424)
Q Consensus 111 l~~l~~L~~L~l~~n~l~ 128 (424)
+...++++++++.+|.+.
T Consensus 107 ~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccccCCcchhhhccCcch
Confidence 666666666666666543
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.78 E-value=0.048 Score=45.87 Aligned_cols=82 Identities=21% Similarity=0.294 Sum_probs=40.7
Q ss_pred CCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCc-cCChhHHhcccccceeEeecCc-CcccchhhhcCCc
Q 042802 38 NHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDG-FLPSSIGNLSMSLKTLIIANCS-IIGNIRRAIGNLS 115 (424)
Q Consensus 38 ~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~~L~~L~l~~n~-l~~~~~~~l~~l~ 115 (424)
.++.+|-++..+.... ...+.+++.++.|.+.+|.--+ .-.+.++...++|+.|++++|. |+...-..+..++
T Consensus 102 ~IeaVDAsds~I~~eG-----le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEG-----LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK 176 (221)
T ss_pred eEEEEecCCchHHHHH-----HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh
Confidence 3555666665554432 1445555666666665554221 1112233333466666666553 3333334455556
Q ss_pred ccceeeccc
Q 042802 116 NLLALTLEG 124 (424)
Q Consensus 116 ~L~~L~l~~ 124 (424)
+|+.|.+.+
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 666665543
No 79
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=89.77 E-value=0.12 Score=48.28 Aligned_cols=210 Identities=20% Similarity=0.135 Sum_probs=105.2
Q ss_pred cCCCCCEEeccCC-cccccCccc-cCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCcc-CCccCChhHH
Q 042802 11 NASKLTVLELGGN-TFSGFIPNT-IGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNP-LDGFLPSSIG 87 (424)
Q Consensus 11 ~~~~L~~L~l~~n-~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~ 87 (424)
.|++|++|+++++ .+++...+. ..+++.++.+.+.+|.=.+... +...=+.+..+..+++.+|. ++..---.+.
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~---l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA---LLKAAAYCLEILKLNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH---HHHHhccChHhhccchhhhccccchHHHHHh
Confidence 5899999999998 455533333 3466777777776653222100 00111334455566655542 2222111222
Q ss_pred hcccccceeEeecCcCcccc-hhhh-cCCcccceeecccCcc-ccccCccc-CCCCCCCeEEccCCcccc--cCChhhcC
Q 042802 88 NLSMSLKTLIIANCSIIGNI-RRAI-GNLSNLLALTLEGNKL-TGPIPITF-GRLQKLQGLDLAFNKLVG--SFPDELCH 161 (424)
Q Consensus 88 ~l~~~L~~L~l~~n~l~~~~-~~~l-~~l~~L~~L~l~~n~l-~~~~p~~~-~~l~~L~~L~L~~n~~~~--~~~~~l~~ 161 (424)
.....|+.|..+++.-.+.. -.++ .+.++|+.|.+..++- +..--..+ .+.+.|+.+++.++.... .+...-.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 22346777777765432221 1122 3557777777777652 21100111 245677777777665431 11122235
Q ss_pred CcccceEeccCCcCccCC-----CccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCc
Q 042802 162 LARLAEFVILGNKPSGSI-----PSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNN 235 (424)
Q Consensus 162 l~~L~~L~l~~n~~~~~~-----~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 235 (424)
++.|+.+.++.+...... ...-..+..|..+.++++....- ..-..+..+++|+.+++-++.
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d------------~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD------------ATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH------------HHHHHHhhCcccceeeeechh
Confidence 667777777766543221 11223345566666666654431 122234555667777766653
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.34 E-value=0.31 Score=26.15 Aligned_cols=17 Identities=41% Similarity=0.431 Sum_probs=9.0
Q ss_pred CCCCEEEccCCccCCCC
Q 042802 37 RNHEWLNLANNSLTSST 53 (424)
Q Consensus 37 ~~L~~L~l~~n~l~~~~ 53 (424)
++|++|+|++|.++.+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 44555555555555554
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.34 E-value=0.31 Score=26.15 Aligned_cols=17 Identities=41% Similarity=0.431 Sum_probs=9.0
Q ss_pred CCCCEEEccCCccCCCC
Q 042802 37 RNHEWLNLANNSLTSST 53 (424)
Q Consensus 37 ~~L~~L~l~~n~l~~~~ 53 (424)
++|++|+|++|.++.+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 44555555555555554
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.94 E-value=0.067 Score=28.23 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=9.6
Q ss_pred CCCCEEeccCCcccccCc
Q 042802 13 SKLTVLELGGNTFSGFIP 30 (424)
Q Consensus 13 ~~L~~L~l~~n~~~~~~~ 30 (424)
++|++|++++|.+++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 566666666666654433
No 83
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=88.78 E-value=0.13 Score=40.98 Aligned_cols=24 Identities=17% Similarity=0.157 Sum_probs=14.4
Q ss_pred ceeeehhHHHHHHHHHHHHHHHHH
Q 042802 357 KILLIVIVFPLSIALTIAITLPLK 380 (424)
Q Consensus 357 ~~~~~~i~~~~~~~~~~~~~~~~~ 380 (424)
+.++++++|++.++++++++++++
T Consensus 48 knIVIGvVVGVGg~ill~il~lvf 71 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLGILALVF 71 (154)
T ss_pred ccEEEEEEecccHHHHHHHHHhhe
Confidence 345557777777766655544443
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.27 E-value=0.078 Score=44.61 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=63.4
Q ss_pred chhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCccccccccc-CCccCceeeccCcc-CCccCC
Q 042802 6 PSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLA-NCKKLRNINLIGNP-LDGFLP 83 (424)
Q Consensus 6 p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~l~~L~~L~l~~n~-~~~~~~ 83 (424)
|.....-..++.+|-++..|.++.-+.+.+++.++.|.+.+|.--+. -.+ ..++ -.++|+.|++++|. |+..-.
T Consensus 94 p~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD-~~L---~~l~~~~~~L~~L~lsgC~rIT~~GL 169 (221)
T KOG3864|consen 94 PGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDD-WCL---ERLGGLAPSLQDLDLSGCPRITDGGL 169 (221)
T ss_pred CCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhh-HHH---HHhcccccchheeeccCCCeechhHH
Confidence 33333335678899999999888888888999999999988753322 011 1122 34799999999874 665556
Q ss_pred hhHHhcccccceeEeecC
Q 042802 84 SSIGNLSMSLKTLIIANC 101 (424)
Q Consensus 84 ~~~~~l~~~L~~L~l~~n 101 (424)
..+..+ ++|+.|.+.+-
T Consensus 170 ~~L~~l-knLr~L~l~~l 186 (221)
T KOG3864|consen 170 ACLLKL-KNLRRLHLYDL 186 (221)
T ss_pred HHHHHh-hhhHHHHhcCc
Confidence 677777 48888888743
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.93 E-value=0.64 Score=24.87 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=7.1
Q ss_pred CCCCEEECcCCCCC
Q 042802 272 TSLEVLNLSKNKIS 285 (424)
Q Consensus 272 ~~L~~L~L~~n~l~ 285 (424)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.93 E-value=0.64 Score=24.87 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=7.1
Q ss_pred CCCCEEECcCCCCC
Q 042802 272 TSLEVLNLSKNKIS 285 (424)
Q Consensus 272 ~~L~~L~L~~n~l~ 285 (424)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 87
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=85.96 E-value=0.96 Score=35.01 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=12.3
Q ss_pred eeeehhHHHHHHHHHHHHHHHH
Q 042802 358 ILLIVIVFPLSIALTIAITLPL 379 (424)
Q Consensus 358 ~~~~~i~~~~~~~~~~~~~~~~ 379 (424)
.++++|+++++++++.++++++
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~ 85 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLIS 85 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeehhHHHHHHHHHHHHHHH
Confidence 3455677776666555444433
No 88
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=85.94 E-value=0.28 Score=29.35 Aligned_cols=12 Identities=17% Similarity=0.576 Sum_probs=5.3
Q ss_pred hhHHHHHHHHHH
Q 042802 362 VIVFPLSIALTI 373 (424)
Q Consensus 362 ~i~~~~~~~~~~ 373 (424)
++++++++++++
T Consensus 16 ~VvVPV~vI~~v 27 (40)
T PF08693_consen 16 GVVVPVGVIIIV 27 (40)
T ss_pred EEEechHHHHHH
Confidence 444444444433
No 89
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=82.92 E-value=1.2 Score=31.25 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=14.6
Q ss_pred CcccHHHHHHHHhccCCC
Q 042802 406 RRFSYSELLQATDNFAET 423 (424)
Q Consensus 406 ~~~~~~el~~at~~f~~~ 423 (424)
.-+||+|=.+|-..|..|
T Consensus 55 DP~TYEDP~qAV~eFAkE 72 (75)
T PF14575_consen 55 DPHTYEDPNQAVREFAKE 72 (75)
T ss_dssp -GGGSSSHHHHHHHCSSB
T ss_pred CcccccCHHHHHHHHHhh
Confidence 347899999999999865
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.01 E-value=1.5 Score=23.62 Aligned_cols=16 Identities=44% Similarity=0.588 Sum_probs=9.6
Q ss_pred CCCCEEEccCCCCCCc
Q 042802 187 TSLRSLYLGSNSLKDI 202 (424)
Q Consensus 187 ~~L~~L~l~~n~l~~i 202 (424)
++|+.|+++.|.++.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666554
No 91
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=75.76 E-value=1.4 Score=32.72 Aligned_cols=11 Identities=9% Similarity=-0.082 Sum_probs=4.8
Q ss_pred eeeehhHHHHH
Q 042802 358 ILLIVIVFPLS 368 (424)
Q Consensus 358 ~~~~~i~~~~~ 368 (424)
..+++|+++++
T Consensus 66 gaiagi~vg~~ 76 (96)
T PTZ00382 66 GAIAGISVAVV 76 (96)
T ss_pred ccEEEEEeehh
Confidence 34444444433
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=73.86 E-value=37 Score=32.95 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=6.6
Q ss_pred CCCEEEccCCccC
Q 042802 38 NHEWLNLANNSLT 50 (424)
Q Consensus 38 ~L~~L~l~~n~l~ 50 (424)
.+++++++.|.+.
T Consensus 166 r~r~~dls~npi~ 178 (553)
T KOG4242|consen 166 RARQHDLSPNPIG 178 (553)
T ss_pred hhhhhccCCCccc
Confidence 3455555555443
No 93
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.62 E-value=2.5 Score=22.74 Aligned_cols=16 Identities=44% Similarity=0.441 Sum_probs=11.7
Q ss_pred CCCEEEccCCccCCCC
Q 042802 38 NHEWLNLANNSLTSST 53 (424)
Q Consensus 38 ~L~~L~l~~n~l~~~~ 53 (424)
+|+.|++++|+++++|
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 5677777777777776
No 94
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.89 E-value=4.5 Score=22.09 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=8.0
Q ss_pred CCCCEEeccCCccc
Q 042802 13 SKLTVLELGGNTFS 26 (424)
Q Consensus 13 ~~L~~L~l~~n~~~ 26 (424)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35566666666554
No 95
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.58 E-value=3.5 Score=39.12 Aligned_cols=21 Identities=57% Similarity=0.914 Sum_probs=18.2
Q ss_pred cCCcccHHHHHHHHhccCCCC
Q 042802 404 TLRRFSYSELLQATDNFAETT 424 (424)
Q Consensus 404 ~~~~~~~~el~~at~~f~~~~ 424 (424)
..+.|+|+||.+||+||++++
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~ 81 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESN 81 (361)
T ss_pred CcceeeHHHHHHHHhCCchhc
Confidence 567899999999999999753
No 96
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=65.45 E-value=2.4 Score=28.37 Aligned_cols=8 Identities=0% Similarity=0.007 Sum_probs=0.0
Q ss_pred hhHHHHHH
Q 042802 362 VIVFPLSI 369 (424)
Q Consensus 362 ~i~~~~~~ 369 (424)
++++++++
T Consensus 13 avIaG~Vv 20 (64)
T PF01034_consen 13 AVIAGGVV 20 (64)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33333333
No 97
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=61.43 E-value=15 Score=21.94 Aligned_cols=6 Identities=17% Similarity=0.064 Sum_probs=2.4
Q ss_pred HHhHHh
Q 042802 379 LKSKLI 384 (424)
Q Consensus 379 ~~~~~~ 384 (424)
+++||.
T Consensus 29 iYRKw~ 34 (43)
T PF08114_consen 29 IYRKWQ 34 (43)
T ss_pred HHHHHH
Confidence 344443
No 98
>PF14979 TMEM52: Transmembrane 52
Probab=58.01 E-value=17 Score=28.91 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=17.5
Q ss_pred eeehhHHHHHHHHHHHHHHHHHhHHhhhccc
Q 042802 359 LLIVIVFPLSIALTIAITLPLKSKLIECGKT 389 (424)
Q Consensus 359 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (424)
+-+++++.+++++++..+...+.|+++.||+
T Consensus 20 WyIwLill~~~llLLCG~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 20 WYIWLILLIGFLLLLCGLTASCVRFCCLRKQ 50 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3335555555555666666667555555544
No 99
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.90 E-value=5.9 Score=38.92 Aligned_cols=39 Identities=28% Similarity=0.228 Sum_probs=18.1
Q ss_pred CCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCc
Q 042802 35 NLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGN 76 (424)
Q Consensus 35 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 76 (424)
+.+.+..+.|++|++..+.... .--...++|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~s---slsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALS---SLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhh---HHHHhcchhheeecccc
Confidence 3445555666666555442100 01122355566666655
No 100
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=55.62 E-value=7.7 Score=35.84 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=8.3
Q ss_pred ehhHHHHHHHHHHHHHH
Q 042802 361 IVIVFPLSIALTIAITL 377 (424)
Q Consensus 361 ~~i~~~~~~~~~~~~~~ 377 (424)
+.|+|++++++++++++
T Consensus 273 vPIaVG~~La~lvlivL 289 (306)
T PF01299_consen 273 VPIAVGAALAGLVLIVL 289 (306)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555555544444443
No 101
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=54.50 E-value=4.1 Score=36.87 Aligned_cols=8 Identities=25% Similarity=0.148 Sum_probs=0.0
Q ss_pred ccHHHHHH
Q 042802 408 FSYSELLQ 415 (424)
Q Consensus 408 ~~~~el~~ 415 (424)
+.-+|+.+
T Consensus 194 IF~dElee 201 (290)
T PF05454_consen 194 IFQDELEE 201 (290)
T ss_dssp --------
T ss_pred eccccccc
Confidence 33345544
No 102
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.38 E-value=7.1 Score=38.36 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=17.8
Q ss_pred CcCccEeeccCc--cccccchhhhcC--CCCCCEEECcCCCCCC
Q 042802 247 LKDLQFMDLAYN--RSEGPIPELFGD--LTSLEVLNLSKNKISG 286 (424)
Q Consensus 247 l~~L~~L~ls~n--~l~~~~~~~l~~--l~~L~~L~L~~n~l~~ 286 (424)
.+.|..|+|++| .+.. ..++.. ..-|++|-+.||++..
T Consensus 243 apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 243 APKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 455666666666 2221 111111 2345566666666643
No 103
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=51.77 E-value=33 Score=34.53 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=5.9
Q ss_pred CCcccHHHHH
Q 042802 405 LRRFSYSELL 414 (424)
Q Consensus 405 ~~~~~~~el~ 414 (424)
++.|.|+-..
T Consensus 320 VqGFD~AKqH 329 (684)
T PF12877_consen 320 VQGFDYAKQH 329 (684)
T ss_pred cccccHHHHH
Confidence 4567776543
No 104
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=51.62 E-value=18 Score=30.91 Aligned_cols=20 Identities=15% Similarity=0.301 Sum_probs=9.1
Q ss_pred eeeehhHHHHHHHHHHHHHH
Q 042802 358 ILLIVIVFPLSIALTIAITL 377 (424)
Q Consensus 358 ~~~~~i~~~~~~~~~~~~~~ 377 (424)
.++++++.+++.++++++++
T Consensus 38 ~I~iaiVAG~~tVILVI~i~ 57 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIV 57 (221)
T ss_pred eeeeeeecchhhhHHHHHHH
Confidence 33445555554444444443
No 105
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=43.58 E-value=30 Score=27.44 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=13.1
Q ss_pred ceeeehhHHHHHHHHHHHHHHHHH
Q 042802 357 KILLIVIVFPLSIALTIAITLPLK 380 (424)
Q Consensus 357 ~~~~~~i~~~~~~~~~~~~~~~~~ 380 (424)
..++.+|+++++.++.++.+++++
T Consensus 60 gtAIaGIVfgiVfimgvva~i~ic 83 (155)
T PF10873_consen 60 GTAIAGIVFGIVFIMGVVAGIAIC 83 (155)
T ss_pred cceeeeeehhhHHHHHHHHHHHHH
Confidence 344446666666555555555454
No 106
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=42.89 E-value=12 Score=31.72 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=7.9
Q ss_pred eehhHHHHHHHHHHHHH
Q 042802 360 LIVIVFPLSIALTIAIT 376 (424)
Q Consensus 360 ~~~i~~~~~~~~~~~~~ 376 (424)
.++|+++++++++++++
T Consensus 159 ~laI~lPvvv~~~~~~~ 175 (189)
T PF14610_consen 159 ALAIALPVVVVVLALIM 175 (189)
T ss_pred eEEEEccHHHHHHHHHH
Confidence 33455555544444433
No 107
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=40.67 E-value=42 Score=24.08 Aligned_cols=8 Identities=13% Similarity=-0.188 Sum_probs=3.2
Q ss_pred cccccCCC
Q 042802 388 KTCTVLSN 395 (424)
Q Consensus 388 ~~~~~~~~ 395 (424)
+|+|+..+
T Consensus 59 krsRrPIY 66 (94)
T PF05393_consen 59 KRSRRPIY 66 (94)
T ss_pred hhccCCcc
Confidence 33444433
No 108
>PHA03164 hypothetical protein; Provisional
Probab=40.66 E-value=36 Score=23.52 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=11.3
Q ss_pred eeehhHHHHHHHHHHHHHHHHH
Q 042802 359 LLIVIVFPLSIALTIAITLPLK 380 (424)
Q Consensus 359 ~~~~i~~~~~~~~~~~~~~~~~ 380 (424)
..+.+..+.+++++++++++++
T Consensus 58 ftFlvLtgLaIamILfiifvly 79 (88)
T PHA03164 58 FTFLVLTGLAIAMILFIIFVLY 79 (88)
T ss_pred eehHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555554454
No 109
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=40.35 E-value=20 Score=42.59 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=26.7
Q ss_pred eccCccccccchhhhcCCCCCCEEECcCCCCCC
Q 042802 254 DLAYNRSEGPIPELFGDLTSLEVLNLSKNKISG 286 (424)
Q Consensus 254 ~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 286 (424)
||++|+|+...+..|..+++|+.|+|++|++..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578888887777778888888888888888874
No 110
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=40.30 E-value=20 Score=18.95 Aligned_cols=11 Identities=36% Similarity=0.576 Sum_probs=5.6
Q ss_pred CCCCEEeccCC
Q 042802 13 SKLTVLELGGN 23 (424)
Q Consensus 13 ~~L~~L~l~~n 23 (424)
++|+.|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555554
No 111
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=39.35 E-value=49 Score=20.23 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhHHhhhc
Q 042802 371 LTIAITLPLKSKLIECG 387 (424)
Q Consensus 371 ~~~~~~~~~~~~~~~~~ 387 (424)
+++.+...+++++...|
T Consensus 17 If~~iGl~IyQkikqIr 33 (49)
T PF11044_consen 17 IFAWIGLSIYQKIKQIR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445565554443
No 112
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=39.32 E-value=22 Score=34.24 Aligned_cols=15 Identities=7% Similarity=0.053 Sum_probs=7.1
Q ss_pred ceeeehhHHHHHHHH
Q 042802 357 KILLIVIVFPLSIAL 371 (424)
Q Consensus 357 ~~~~~~i~~~~~~~~ 371 (424)
..+|++|.|++++++
T Consensus 366 tgaIaGIsvavvvvV 380 (397)
T PF03302_consen 366 TGAIAGISVAVVVVV 380 (397)
T ss_pred ccceeeeeehhHHHH
Confidence 345555555544333
No 113
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=36.37 E-value=25 Score=27.69 Aligned_cols=7 Identities=14% Similarity=0.297 Sum_probs=3.2
Q ss_pred CCCCCCC
Q 042802 340 VQPCKVS 346 (424)
Q Consensus 340 ~~~c~~~ 346 (424)
...|-.+
T Consensus 14 y~ecls~ 20 (189)
T PF05568_consen 14 YGECLSP 20 (189)
T ss_pred hhhhcCC
Confidence 3445543
No 114
>PF15345 TMEM51: Transmembrane protein 51
Probab=30.97 E-value=55 Score=28.44 Aligned_cols=6 Identities=50% Similarity=0.966 Sum_probs=4.1
Q ss_pred cHHHHH
Q 042802 409 SYSELL 414 (424)
Q Consensus 409 ~~~el~ 414 (424)
+|+|.+
T Consensus 126 SYEEvv 131 (233)
T PF15345_consen 126 SYEEVV 131 (233)
T ss_pred ChHHHH
Confidence 687764
No 115
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.48 E-value=39 Score=40.37 Aligned_cols=33 Identities=27% Similarity=0.229 Sum_probs=28.5
Q ss_pred ECccCcccccCchhhccCcCccEeeccCccccc
Q 042802 230 NLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEG 262 (424)
Q Consensus 230 ~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~ 262 (424)
+|++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578999997777788999999999999998764
No 116
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=29.47 E-value=1e+02 Score=21.67 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 042802 364 VFPLSIALTIAITL 377 (424)
Q Consensus 364 ~~~~~~~~~~~~~~ 377 (424)
++++++.++++..+
T Consensus 7 ~~Pliif~ifVap~ 20 (75)
T TIGR02976 7 AIPLIIFVIFVAPL 20 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 117
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=28.78 E-value=1.1e+02 Score=21.51 Aligned_cols=10 Identities=0% Similarity=0.149 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 042802 368 SIALTIAITL 377 (424)
Q Consensus 368 ~~~~~~~~~~ 377 (424)
++.++++..+
T Consensus 11 ivf~ifVap~ 20 (75)
T PF06667_consen 11 IVFMIFVAPI 20 (75)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 118
>PRK09458 pspB phage shock protein B; Provisional
Probab=24.98 E-value=1.3e+02 Score=21.12 Aligned_cols=15 Identities=20% Similarity=0.498 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHHH
Q 042802 363 IVFPLSIALTIAITL 377 (424)
Q Consensus 363 i~~~~~~~~~~~~~~ 377 (424)
+++++++.+++++.+
T Consensus 6 l~~PliiF~ifVaPi 20 (75)
T PRK09458 6 LAIPLTIFVLFVAPI 20 (75)
T ss_pred HHHhHHHHHHHHHHH
Confidence 344444444444444
No 119
>PF07095 IgaA: Intracellular growth attenuator protein IgaA; InterPro: IPR010771 This family consists of several bacterial intracellular growth attenuator (IgaA) proteins. IgaA is involved in negative control of bacterial proliferation within fibroblasts. IgaA is homologous to the Escherichia coli YrfF and Proteus mirabilis UmoB proteins. Whereas the biological function of YrfF is currently unknown, UmoB has been shown elsewhere to act as a positive regulator of FlhDC, the master regulator of flagella and swarming. FlhDC has been shown to repress cell division during P. mirabilis swarming, suggesting that UmoB could repress cell division via FlhDC. This biological function, if maintained in Salmonella enterica, could sustain a putative negative control of cell division and growth exerted by IgaA in intracellular bacteria [].; GO: 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=22.41 E-value=1.7e+02 Score=30.01 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=9.1
Q ss_pred hhccCCcccHHHHHHHHhc
Q 042802 401 SQATLRRFSYSELLQATDN 419 (424)
Q Consensus 401 ~~~~~~~~~~~el~~at~~ 419 (424)
...+.++.+-+| .+|-++
T Consensus 39 ~~~~~RKLt~eE-r~aIe~ 56 (705)
T PF07095_consen 39 AKPTHRKLTAEE-RQAIEQ 56 (705)
T ss_pred CCCCCCCCCHHH-HHHHHH
Confidence 334556676554 344443
No 120
>PF15069 FAM163: FAM163 family
Probab=21.67 E-value=2.1e+02 Score=22.90 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=11.3
Q ss_pred eeeehhHHHHHHHHHHHHHHHHH
Q 042802 358 ILLIVIVFPLSIALTIAITLPLK 380 (424)
Q Consensus 358 ~~~~~i~~~~~~~~~~~~~~~~~ 380 (424)
++|.+.+++.++++.++++..++
T Consensus 6 vVItGgILAtVILLcIIaVLCYC 28 (143)
T PF15069_consen 6 VVITGGILATVILLCIIAVLCYC 28 (143)
T ss_pred EEEechHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444444
Done!