Query 042802
Match_columns 424
No_of_seqs 357 out of 4686
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 16:51:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.7E-46 1.6E-50 385.5 25.1 343 2-348 331-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 4.7E-42 1.6E-46 355.6 24.6 330 2-336 282-721 (768)
3 3v47_A TOLL-like receptor 5B a 100.0 4.1E-39 1.4E-43 314.5 27.8 319 13-337 30-413 (455)
4 4eco_A Uncharacterized protein 100.0 1E-38 3.5E-43 323.5 24.2 316 2-331 196-578 (636)
5 4eco_A Uncharacterized protein 100.0 1.2E-38 4.2E-43 323.0 22.1 293 24-330 194-547 (636)
6 2id5_A Lingo-1, leucine rich r 100.0 2.3E-38 7.8E-43 311.1 22.5 325 4-336 25-360 (477)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-37 4.6E-42 314.7 26.8 197 139-337 350-563 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-37 8.4E-42 323.4 28.5 222 111-336 286-564 (844)
9 4ecn_A Leucine-rich repeat pro 100.0 1.4E-37 4.7E-42 321.2 25.9 316 5-336 440-822 (876)
10 3t6q_A CD180 antigen; protein- 100.0 5.3E-37 1.8E-41 310.3 28.8 203 110-313 273-517 (606)
11 3v47_A TOLL-like receptor 5B a 100.0 3.1E-37 1.1E-41 301.3 21.6 310 2-317 43-416 (455)
12 2z63_A TOLL-like receptor 4, v 100.0 1.4E-36 4.9E-41 304.9 22.7 134 203-336 399-535 (570)
13 2z7x_B TOLL-like receptor 1, v 100.0 3.4E-36 1.2E-40 298.8 24.1 110 6-127 38-150 (520)
14 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-35 4.2E-40 304.3 27.9 334 3-337 236-627 (680)
15 3t6q_A CD180 antigen; protein- 100.0 1.3E-35 4.4E-40 300.2 26.5 320 5-331 49-461 (606)
16 1ogq_A PGIP-2, polygalacturona 100.0 2.5E-36 8.6E-41 279.7 19.3 256 66-337 50-309 (313)
17 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.2E-36 2.8E-40 298.7 24.4 141 5-159 46-191 (562)
18 2id5_A Lingo-1, leucine rich r 100.0 6.5E-36 2.2E-40 293.6 22.7 313 15-336 13-337 (477)
19 4ecn_A Leucine-rich repeat pro 100.0 9.1E-36 3.1E-40 307.6 24.4 320 3-333 479-841 (876)
20 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-35 5.4E-40 299.5 22.9 127 203-330 379-508 (606)
21 4g8a_A TOLL-like receptor 4; l 100.0 5.1E-35 1.7E-39 297.2 26.5 325 4-336 45-584 (635)
22 2z81_A CD282 antigen, TOLL-lik 100.0 6.2E-36 2.1E-40 298.9 19.4 125 203-330 337-484 (549)
23 3o6n_A APL1; leucine-rich repe 100.0 9.3E-35 3.2E-39 277.9 24.5 304 11-334 43-354 (390)
24 2z63_A TOLL-like receptor 4, v 100.0 5.9E-35 2E-39 293.2 23.4 178 138-316 346-538 (570)
25 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-34 3.7E-39 288.0 23.0 309 4-330 14-455 (520)
26 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-34 5.2E-39 302.3 25.2 298 4-310 18-376 (844)
27 1ziw_A TOLL-like receptor 3; i 100.0 4.6E-34 1.6E-38 292.6 26.3 299 4-310 18-343 (680)
28 3oja_B Anopheles plasmodium-re 100.0 3E-34 1E-38 289.1 24.0 304 11-334 49-360 (597)
29 3o6n_A APL1; leucine-rich repe 100.0 1.2E-33 4E-38 270.3 23.8 309 4-336 59-378 (390)
30 2z81_A CD282 antigen, TOLL-lik 100.0 3.4E-34 1.2E-38 286.4 19.6 296 4-309 19-423 (549)
31 3oja_B Anopheles plasmodium-re 100.0 1.6E-33 5.5E-38 283.7 23.7 311 3-336 64-384 (597)
32 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.8E-33 9.6E-38 280.3 24.6 121 5-137 68-193 (562)
33 1ogq_A PGIP-2, polygalacturona 100.0 2.2E-34 7.4E-39 266.7 14.5 250 37-309 50-304 (313)
34 4fmz_A Internalin; leucine ric 100.0 1.2E-32 4.2E-37 259.0 26.4 296 9-330 40-344 (347)
35 1o6v_A Internalin A; bacterial 100.0 3.3E-32 1.1E-36 266.3 27.9 301 5-333 61-389 (466)
36 1xku_A Decorin; proteoglycan, 100.0 3.1E-32 1.1E-36 254.5 24.7 287 14-329 32-329 (330)
37 2ft3_A Biglycan; proteoglycan, 100.0 2.4E-32 8.3E-37 255.4 22.3 297 4-330 18-331 (332)
38 3bz5_A Internalin-J, INLJ; leu 100.0 1.9E-31 6.4E-36 259.3 25.7 295 4-330 33-350 (457)
39 4g8a_A TOLL-like receptor 4; l 100.0 1E-31 3.6E-36 272.8 24.3 302 6-313 69-584 (635)
40 1xku_A Decorin; proteoglycan, 100.0 4.8E-31 1.7E-35 246.4 25.8 268 37-333 31-307 (330)
41 4fmz_A Internalin; leucine ric 100.0 7.1E-31 2.4E-35 247.0 26.2 277 8-309 61-346 (347)
42 2ft3_A Biglycan; proteoglycan, 100.0 4.6E-31 1.6E-35 246.7 23.6 266 38-333 34-308 (332)
43 1o6v_A Internalin A; bacterial 100.0 7.9E-31 2.7E-35 256.5 25.8 293 11-331 44-365 (466)
44 3bz5_A Internalin-J, INLJ; leu 100.0 5.9E-30 2E-34 248.8 26.6 274 5-310 57-353 (457)
45 2z80_A TOLL-like receptor 2, v 100.0 5.7E-31 1.9E-35 248.2 17.7 283 9-314 27-319 (353)
46 2z66_A Variable lymphocyte rec 100.0 1.3E-30 4.4E-35 240.8 18.0 275 16-336 10-291 (306)
47 2z66_A Variable lymphocyte rec 100.0 2.6E-30 8.8E-35 238.8 18.0 267 4-314 21-292 (306)
48 1jl5_A Outer protein YOPM; leu 100.0 3.3E-30 1.1E-34 250.3 18.4 227 3-261 24-270 (454)
49 3zyi_A Leucine-rich repeat-con 100.0 3.1E-29 1.1E-33 244.2 24.5 252 38-313 55-307 (452)
50 4fcg_A Uncharacterized protein 100.0 6.5E-30 2.2E-34 238.0 18.4 234 37-309 81-314 (328)
51 3zyj_A Leucine-rich repeat-con 100.0 4E-29 1.4E-33 242.6 24.4 252 38-313 44-296 (440)
52 1ozn_A Reticulon 4 receptor; N 100.0 7.7E-30 2.6E-34 233.2 17.7 251 40-336 14-265 (285)
53 4fcg_A Uncharacterized protein 100.0 3.1E-29 1.1E-33 233.4 20.5 225 12-284 80-313 (328)
54 1ozn_A Reticulon 4 receptor; N 100.0 2.3E-29 7.8E-34 230.0 18.8 254 15-315 13-267 (285)
55 2z80_A TOLL-like receptor 2, v 100.0 5.3E-30 1.8E-34 241.6 14.0 268 4-289 45-318 (353)
56 1jl5_A Outer protein YOPM; leu 100.0 1.3E-28 4.5E-33 239.1 24.1 277 13-333 91-410 (454)
57 3zyi_A Leucine-rich repeat-con 100.0 1E-28 3.6E-33 240.5 22.3 251 67-336 55-307 (452)
58 3zyj_A Leucine-rich repeat-con 100.0 9.9E-29 3.4E-33 239.8 22.0 252 67-336 44-296 (440)
59 1z7x_W Ribonuclease inhibitor; 100.0 3.2E-30 1.1E-34 252.0 4.2 317 9-330 24-409 (461)
60 1wwl_A Monocyte differentiatio 100.0 4.3E-30 1.5E-34 237.8 3.9 250 61-331 38-308 (312)
61 1z7x_W Ribonuclease inhibitor; 100.0 9.7E-31 3.3E-35 255.6 -1.1 296 14-310 4-355 (461)
62 3o53_A Protein LRIM1, AGAP0063 100.0 8.8E-30 3E-34 236.3 4.5 265 14-311 11-278 (317)
63 1wwl_A Monocyte differentiatio 100.0 1.6E-28 5.6E-33 227.2 10.7 253 32-310 38-310 (312)
64 3o53_A Protein LRIM1, AGAP0063 99.9 5.6E-29 1.9E-33 230.9 6.0 249 8-289 29-280 (317)
65 3oja_A Leucine-rich immune mol 99.9 4.2E-28 1.4E-32 237.8 10.3 234 38-304 35-270 (487)
66 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-25 3.9E-30 225.1 26.3 256 13-314 40-302 (622)
67 3oja_A Leucine-rich immune mol 99.9 5.2E-28 1.8E-32 237.1 8.9 246 64-337 32-287 (487)
68 2z62_A TOLL-like receptor 4, v 99.9 2.8E-26 9.5E-31 208.5 19.5 212 91-315 28-243 (276)
69 2z62_A TOLL-like receptor 4, v 99.9 3.2E-25 1.1E-29 201.5 19.0 207 67-288 29-240 (276)
70 2o6q_A Variable lymphocyte rec 99.9 1.8E-24 6.3E-29 195.8 21.9 206 67-313 17-222 (270)
71 1p9a_G Platelet glycoprotein I 99.9 9.8E-25 3.4E-29 199.4 20.2 200 92-311 11-210 (290)
72 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-24 4E-29 217.9 22.3 248 4-296 54-308 (622)
73 3rfs_A Internalin B, repeat mo 99.9 3.9E-25 1.3E-29 200.4 14.9 208 34-295 38-245 (272)
74 3rfs_A Internalin B, repeat mo 99.9 5.9E-25 2E-29 199.2 16.0 212 8-249 36-247 (272)
75 2o6q_A Variable lymphocyte rec 99.9 5E-24 1.7E-28 192.9 22.1 205 116-336 17-222 (270)
76 1p9a_G Platelet glycoprotein I 99.9 1.2E-23 4E-28 192.2 20.1 178 92-286 32-209 (290)
77 2ca6_A RAN GTPase-activating p 99.9 6.1E-26 2.1E-30 216.4 3.0 251 28-312 23-319 (386)
78 2ca6_A RAN GTPase-activating p 99.9 1.7E-25 5.8E-30 213.4 4.1 252 4-289 23-320 (386)
79 2xwt_C Thyrotropin receptor; s 99.9 1.9E-23 6.6E-28 185.5 16.2 197 91-306 31-236 (239)
80 2ast_B S-phase kinase-associat 99.9 6.9E-25 2.3E-29 205.1 6.3 233 66-315 70-312 (336)
81 4glp_A Monocyte differentiatio 99.9 9.6E-24 3.3E-28 195.0 13.7 226 67-309 65-307 (310)
82 3goz_A Leucine-rich repeat-con 99.9 1.1E-24 3.6E-29 205.9 5.9 261 17-287 2-299 (362)
83 2xwt_C Thyrotropin receptor; s 99.9 3.2E-23 1.1E-27 184.1 14.5 196 38-258 32-236 (239)
84 3m19_A Variable lymphocyte rec 99.9 2E-22 6.7E-27 180.3 19.6 180 117-312 16-195 (251)
85 2ast_B S-phase kinase-associat 99.9 5.6E-25 1.9E-29 205.7 3.1 224 67-306 48-282 (336)
86 3ogk_B Coronatine-insensitive 99.9 5E-25 1.7E-29 222.0 1.4 316 11-330 162-524 (592)
87 4glp_A Monocyte differentiatio 99.9 8.1E-23 2.8E-27 188.8 15.1 229 37-286 64-308 (310)
88 3goz_A Leucine-rich repeat-con 99.9 5.3E-24 1.8E-28 201.1 6.2 257 41-311 2-299 (362)
89 1h6u_A Internalin H; cell adhe 99.9 2.4E-22 8.2E-27 185.3 16.2 189 92-309 42-230 (308)
90 1h6u_A Internalin H; cell adhe 99.9 6.7E-22 2.3E-26 182.3 19.1 197 61-287 36-232 (308)
91 3m19_A Variable lymphocyte rec 99.9 8.3E-22 2.8E-26 176.3 18.9 179 93-287 16-194 (251)
92 3ogk_B Coronatine-insensitive 99.9 7.2E-24 2.5E-28 213.5 1.3 290 5-311 184-528 (592)
93 4ay9_X Follicle-stimulating ho 99.9 7.2E-21 2.5E-25 178.7 17.9 123 16-147 12-136 (350)
94 4ay9_X Follicle-stimulating ho 99.9 7.8E-21 2.7E-25 178.5 15.9 240 40-306 12-256 (350)
95 2o6s_A Variable lymphocyte rec 99.9 1.1E-20 3.6E-25 164.0 15.6 130 67-197 29-158 (208)
96 2o6s_A Variable lymphocyte rec 99.8 1.1E-20 3.9E-25 163.9 14.8 180 69-272 10-189 (208)
97 2p1m_B Transport inhibitor res 99.8 5.6E-23 1.9E-27 207.1 -0.1 192 137-330 287-517 (594)
98 3cvr_A Invasion plasmid antige 99.8 2.4E-20 8.4E-25 184.4 14.9 189 38-271 60-253 (571)
99 3cvr_A Invasion plasmid antige 99.8 1.1E-19 3.7E-24 179.8 18.3 187 67-295 60-253 (571)
100 2p1m_B Transport inhibitor res 99.8 6.9E-22 2.3E-26 199.1 2.2 196 112-309 286-519 (594)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 5.1E-20 1.7E-24 161.0 11.4 156 118-313 14-170 (220)
102 2v9t_B SLIT homolog 2 protein 99.8 8.3E-20 2.9E-24 159.7 12.3 153 118-310 14-166 (220)
103 1h6t_A Internalin B; cell adhe 99.8 2.7E-19 9.3E-24 163.4 16.1 168 92-310 47-214 (291)
104 2xot_A Amphoterin-induced prot 99.8 1.7E-19 5.9E-24 170.0 14.2 177 93-285 20-202 (361)
105 1h6t_A Internalin B; cell adhe 99.8 1.4E-19 4.8E-24 165.3 12.9 147 35-199 44-190 (291)
106 1m9s_A Internalin B; cell inva 99.8 2.8E-19 9.7E-24 178.6 15.1 192 66-287 21-212 (605)
107 2v9t_B SLIT homolog 2 protein 99.8 9.5E-19 3.3E-23 152.9 15.2 154 92-285 12-165 (220)
108 1m9s_A Internalin B; cell inva 99.8 4.3E-19 1.5E-23 177.3 14.6 172 10-201 40-211 (605)
109 2xot_A Amphoterin-induced prot 99.8 4.4E-19 1.5E-23 167.2 13.6 153 40-201 21-177 (361)
110 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-18 4.3E-23 152.2 15.4 156 92-287 12-168 (220)
111 1dce_A Protein (RAB geranylger 99.8 2.6E-21 9E-26 192.2 -3.1 38 63-102 346-383 (567)
112 3e6j_A Variable lymphocyte rec 99.8 2.6E-18 9E-23 151.1 16.0 155 118-313 22-176 (229)
113 3e6j_A Variable lymphocyte rec 99.8 5E-18 1.7E-22 149.3 17.2 155 92-287 20-174 (229)
114 1dce_A Protein (RAB geranylger 99.8 5.6E-21 1.9E-25 189.8 -2.1 217 34-303 346-567 (567)
115 4ezg_A Putative uncharacterize 99.8 8.7E-19 3E-23 150.5 11.3 155 34-201 41-195 (197)
116 4ezg_A Putative uncharacterize 99.8 4E-18 1.4E-22 146.4 12.7 149 92-261 45-194 (197)
117 1xeu_A Internalin C; cellular 99.8 2.1E-18 7.1E-23 155.1 11.1 166 92-309 20-185 (263)
118 1xeu_A Internalin C; cellular 99.7 3.5E-18 1.2E-22 153.5 10.2 171 64-263 17-187 (263)
119 4b8c_D Glucose-repressible alc 99.7 1.2E-18 4.2E-23 178.3 7.2 182 106-310 215-405 (727)
120 1w8a_A SLIT protein; signaling 99.7 6.8E-18 2.3E-22 144.2 10.5 117 220-336 50-166 (192)
121 3sb4_A Hypothetical leucine ri 99.7 9.6E-18 3.3E-22 156.0 8.3 274 3-303 13-328 (329)
122 4b8c_D Glucose-repressible alc 99.7 1.8E-17 6.1E-22 169.7 6.8 143 29-181 216-359 (727)
123 2ell_A Acidic leucine-rich nuc 99.7 1.6E-16 5.6E-21 132.6 11.5 133 12-152 23-160 (168)
124 1w8a_A SLIT protein; signaling 99.7 2E-16 6.7E-21 135.1 11.6 132 118-289 11-143 (192)
125 2wfh_A SLIT homolog 2 protein 99.7 1.9E-16 6.6E-21 135.2 10.7 131 166-313 13-143 (193)
126 2je0_A Acidic leucine-rich nuc 99.7 1.8E-16 6.1E-21 129.5 9.8 129 11-147 15-148 (149)
127 2ell_A Acidic leucine-rich nuc 99.7 4.1E-16 1.4E-20 130.1 12.1 131 164-309 25-160 (168)
128 2je0_A Acidic leucine-rich nuc 99.7 3.4E-16 1.2E-20 127.9 10.8 128 163-305 17-149 (149)
129 3sb4_A Hypothetical leucine ri 99.7 5.4E-16 1.9E-20 144.1 13.0 259 36-310 24-311 (329)
130 4fdw_A Leucine rich hypothetic 99.7 1.1E-14 3.9E-19 138.4 21.9 267 13-306 113-380 (401)
131 4fdw_A Leucine rich hypothetic 99.6 6.3E-15 2.2E-19 140.1 19.2 246 8-284 131-382 (401)
132 2wfh_A SLIT homolog 2 protein 99.6 3.5E-15 1.2E-19 127.3 12.6 107 67-175 32-138 (193)
133 2o6r_A Variable lymphocyte rec 99.6 6.6E-15 2.2E-19 123.9 13.2 114 187-313 28-141 (177)
134 2o6r_A Variable lymphocyte rec 99.6 1.3E-14 4.5E-19 122.0 13.2 109 92-200 29-137 (177)
135 1a9n_A U2A', U2A'; complex (nu 99.6 6.6E-15 2.3E-19 123.7 8.8 133 8-152 14-153 (176)
136 1ds9_A Outer arm dynein; leuci 99.6 1.2E-16 4E-21 137.3 -2.5 150 9-169 14-180 (198)
137 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-14 3.9E-19 122.3 8.4 130 112-260 16-152 (176)
138 1ds9_A Outer arm dynein; leuci 99.5 5.2E-16 1.8E-20 133.2 -0.1 139 1-152 30-185 (198)
139 3g39_A Variable lymphocyte rec 99.5 1.2E-13 4.3E-18 115.1 11.1 110 189-314 11-120 (170)
140 4fs7_A Uncharacterized protein 99.5 3.5E-12 1.2E-16 121.4 19.6 280 7-306 65-376 (394)
141 2r9u_A Variable lymphocyte rec 99.5 4E-13 1.4E-17 112.4 11.1 90 224-313 33-122 (174)
142 3g39_A Variable lymphocyte rec 99.4 1.5E-12 5.2E-17 108.5 11.1 86 115-200 30-115 (170)
143 2r9u_A Variable lymphocyte rec 99.4 2.6E-12 9E-17 107.4 11.3 86 115-200 33-118 (174)
144 2ifg_A High affinity nerve gro 99.3 4.9E-12 1.7E-16 118.2 9.7 90 220-310 27-117 (347)
145 4fs7_A Uncharacterized protein 99.3 7.4E-11 2.5E-15 112.2 17.5 281 7-301 88-393 (394)
146 3un9_A NLR family member X1; l 99.3 1.9E-13 6.6E-18 128.6 -0.9 136 66-201 101-253 (372)
147 4gt6_A Cell surface protein; l 99.3 4.9E-10 1.7E-14 106.5 22.5 271 8-307 58-368 (394)
148 3un9_A NLR family member X1; l 99.3 2.6E-13 8.7E-18 127.8 -0.5 172 65-245 71-260 (372)
149 4gt6_A Cell surface protein; l 99.2 3.4E-10 1.2E-14 107.6 19.0 271 7-308 81-390 (394)
150 2ifg_A High affinity nerve gro 99.2 3.8E-11 1.3E-15 112.2 10.0 107 228-336 12-120 (347)
151 4h09_A Hypothetical leucine ri 99.0 3.7E-08 1.3E-12 93.0 21.3 277 9-304 42-341 (379)
152 2ra8_A Uncharacterized protein 98.9 3.1E-09 1E-13 99.2 9.8 83 223-307 251-341 (362)
153 2ra8_A Uncharacterized protein 98.9 1.7E-09 5.9E-14 100.9 5.3 167 31-201 133-321 (362)
154 4h09_A Hypothetical leucine ri 98.8 7.7E-07 2.6E-11 83.9 20.9 258 32-306 41-320 (379)
155 1io0_A Tropomodulin; LRR prote 98.6 1.1E-08 3.7E-13 86.2 0.9 122 29-152 28-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 5E-08 1.7E-12 82.1 3.3 118 183-309 32-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 1.2E-07 4.1E-12 84.0 3.5 62 223-286 169-234 (267)
158 3rw6_A Nuclear RNA export fact 98.4 2.4E-07 8.3E-12 82.0 4.3 108 9-122 137-258 (267)
159 3e4g_A ATP synthase subunit S, 98.2 1.2E-06 4E-11 72.0 4.4 85 37-126 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.2 1.2E-06 4.1E-11 72.0 3.9 82 226-307 63-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00038 1.3E-08 58.2 5.1 89 219-307 65-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00014 4.7E-09 60.9 1.9 118 33-152 37-170 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0017 5.8E-08 50.5 6.0 57 252-310 12-69 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.0057 2E-07 47.5 5.5 57 228-286 12-69 (130)
165 2jwa_A Receptor tyrosine-prote 87.0 0.54 1.9E-05 28.0 2.8 6 362-367 16-21 (44)
166 2k1k_A Ephrin type-A receptor 79.6 1.5 5E-05 25.3 2.6 19 358-376 11-29 (38)
167 2lz0_A Uncharacterized protein 71.9 5.4 0.00018 28.8 4.5 47 23-75 6-52 (100)
168 2lz0_A Uncharacterized protein 64.7 18 0.0006 26.0 6.0 45 103-148 8-52 (100)
169 2knc_B Integrin beta-3; transm 30.3 44 0.0015 22.7 3.1 8 363-370 13-20 (79)
170 2k1a_A Integrin alpha-IIB; sin 25.3 1.1E+02 0.0037 17.9 4.1 6 364-369 14-19 (42)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.7e-46 Score=385.53 Aligned_cols=343 Identities=34% Similarity=0.504 Sum_probs=253.2
Q ss_pred eecCchh-hhcCCCCCEEeccCCcccccCccccCCCC-CCCEEEccCCccCCC-CCcc--------------------cc
Q 042802 2 FGTIPSS-ITNASKLTVLELGGNTFSGFIPNTIGNLR-NHEWLNLANNSLTSS-TSKL--------------------SF 58 (424)
Q Consensus 2 ~g~lp~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~-~~~~--------------------~~ 58 (424)
.|.+|.. ++.+++|++|++++|.+++.+|..+.+++ +|++|++++|.+++. +... ..
T Consensus 331 ~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 410 (768)
T 3rgz_A 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410 (768)
T ss_dssp EEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC
T ss_pred cCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc
Confidence 3566655 66667777777777766666666665554 566666666555432 1100 01
Q ss_pred cccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCC
Q 042802 59 LSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRL 138 (424)
Q Consensus 59 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l 138 (424)
+..+.++++|+.|++++|.+++.+|..++.++ +|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred CHHHhcCCCCCEEECcCCcccCcccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 14556666666666666666666666666663 66666666666666666666666666666666666666666666666
Q ss_pred CCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCC-c---------------
Q 042802 139 QKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD-I--------------- 202 (424)
Q Consensus 139 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-i--------------- 202 (424)
++|++|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++ +
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 667777777666666666666666667777777776666666666666777777776665542 0
Q ss_pred -----------------------------------------eeeeccCCcccccccccccccCcccEEECccCcccccCc
Q 042802 203 -----------------------------------------LFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIP 241 (424)
Q Consensus 203 -----------------------------------------~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 241 (424)
...+++.+.+.|.+|..+..+++|++|++++|.++|.+|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 011223355556666677778899999999999999999
Q ss_pred hhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCCCCccccc
Q 042802 242 ATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGIFTSF 321 (424)
Q Consensus 242 ~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l 321 (424)
..++.++.|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+..+++|++||+++|+++|.+|..+.+..+
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~ 729 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGS
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcCCcCCCCCCCCCCCCCCC
Q 042802 322 IAESFMGNELLCGLPNLQVQPCKVSKP 348 (424)
Q Consensus 322 ~~~~~~~n~~lc~~~~~~~~~c~~~~~ 348 (424)
...++.||+.+||.|. .+|....+
T Consensus 730 ~~~~~~gN~~Lcg~~l---~~C~~~~~ 753 (768)
T 3rgz_A 730 PPAKFLNNPGLCGYPL---PRCDPSNA 753 (768)
T ss_dssp CGGGGCSCTEEESTTS---CCCCSCC-
T ss_pred CHHHhcCCchhcCCCC---cCCCCCcc
Confidence 9999999999999763 37876543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.7e-42 Score=355.57 Aligned_cols=330 Identities=35% Similarity=0.533 Sum_probs=252.9
Q ss_pred eecCchhhhcC-CCCCEEeccCCcccccCccccCCCCCCCEEEccCCccC-CCCCcccccccccCCccCceeeccCccCC
Q 042802 2 FGTIPSSITNA-SKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLT-SSTSKLSFLSSLANCKKLRNINLIGNPLD 79 (424)
Q Consensus 2 ~g~lp~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 79 (424)
+|.+|..+... ++|++|++++|.+++..|..|+++++|++|++++|.++ .+|. ..+.++++|++|++++|.++
T Consensus 282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~-----~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM-----DTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH-----HHHTTCTTCCEEECCSSEEE
T ss_pred CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH-----HHHhcCCCCCEEeCcCCccC
Confidence 45677766654 77777777777777777777777777777777777776 3341 23666666666666666666
Q ss_pred ccCChhHHhcc--------------------------cccceeEeecCcCcccchhhhcCCcccceeecccCccccccCc
Q 042802 80 GFLPSSIGNLS--------------------------MSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPI 133 (424)
Q Consensus 80 ~~~~~~~~~l~--------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 133 (424)
+.+|..+..++ .+|++|++++|.+.+.+|..+.++++|++|++++|.+++..|.
T Consensus 357 ~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 436 (768)
T 3rgz_A 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436 (768)
T ss_dssp ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH
Confidence 66666655542 2456666666666666777777777888888888888777777
Q ss_pred ccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCC-----------c
Q 042802 134 TFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD-----------I 202 (424)
Q Consensus 134 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-----------i 202 (424)
.++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++ +
T Consensus 437 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 516 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence 78888888888888888877788888888888888888888888888888888888888888887663 3
Q ss_pred eeeeccCCcccccccccccccCcccEEECccCcccccCchhh--------------------------------------
Q 042802 203 LFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATI-------------------------------------- 244 (424)
Q Consensus 203 ~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-------------------------------------- 244 (424)
+.+++++|.+.+.+|..+..+++|+.|++++|.++|.+|..+
T Consensus 517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (768)
T 3rgz_A 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596 (768)
T ss_dssp CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence 778888888888888888888888888888888877666543
Q ss_pred --------------------------------ccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccc
Q 042802 245 --------------------------------VGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSM 292 (424)
Q Consensus 245 --------------------------------~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 292 (424)
..+++|+.||+++|+++|.+|..++.+++|+.|+|++|.++|.+|..+
T Consensus 597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l 676 (768)
T 3rgz_A 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676 (768)
T ss_dssp TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH
Confidence 234678889999999998999889999999999999999999999999
Q ss_pred cCCCCCCEEEcccccCcccCCCC-CcccccccccccCCcCCcCCC
Q 042802 293 EKLVYLRELNLSFNKLEGEIPSG-GIFTSFIAESFMGNELLCGLP 336 (424)
Q Consensus 293 ~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 336 (424)
+.+++|+.||+++|+++|.+|.. ..+..++.+++++|+....+|
T Consensus 677 ~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 99999999999999999988865 567778888898887544444
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.1e-39 Score=314.53 Aligned_cols=319 Identities=21% Similarity=0.262 Sum_probs=276.7
Q ss_pred CCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCC-CCcccccccccCCccCceeeccCccCCccCChhHHhccc
Q 042802 13 SKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSS-TSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSM 91 (424)
Q Consensus 13 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 91 (424)
++|++|++++|.+++..|..|+++++|++|++++|.+.+. +. ..|.++++|++|++++|.+++..|..++.++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~- 103 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN-----NTFRGLSSLIILKLDYNQFLQLETGAFNGLA- 103 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECT-----TTTTTCTTCCEEECTTCTTCEECTTTTTTCT-
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECc-----ccccccccCCEEeCCCCccCccChhhccCcc-
Confidence 7899999999999988899999999999999999988643 32 6789999999999999999988899999984
Q ss_pred ccceeEeecCcCcccchhh--hcCCcccceeecccCccccccCcc-cCCCCCCCeEEccCCcccccCChhhcCC--cccc
Q 042802 92 SLKTLIIANCSIIGNIRRA--IGNLSNLLALTLEGNKLTGPIPIT-FGRLQKLQGLDLAFNKLVGSFPDELCHL--ARLA 166 (424)
Q Consensus 92 ~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~L~~n~~~~~~~~~l~~l--~~L~ 166 (424)
+|++|++++|.+.+..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|++.+..+..+..+ .+|+
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 9999999999998766655 899999999999999999877776 8899999999999999998888777665 5677
Q ss_pred eEeccCCcCccCCCcc--------CCCCCCCCEEEccCCCCC--------------------------------------
Q 042802 167 EFVILGNKPSGSIPSC--------LSNLTSLRSLYLGSNSLK-------------------------------------- 200 (424)
Q Consensus 167 ~L~l~~n~~~~~~~~~--------l~~l~~L~~L~l~~n~l~-------------------------------------- 200 (424)
.|++++|.+.+..+.. +..+++|+.|++++|.++
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 7777777776544432 224566777777777552
Q ss_pred ------------CceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhh
Q 042802 201 ------------DILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELF 268 (424)
Q Consensus 201 ------------~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l 268 (424)
.++.+++++|.+.+..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 46788899999999889999999999999999999998889999999999999999999998888999
Q ss_pred cCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCCC-CcccccccccccCCcCCcCCCC
Q 042802 269 GDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSG-GIFTSFIAESFMGNELLCGLPN 337 (424)
Q Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 337 (424)
..+++|++|++++|.+++..|..+..+++|++|++++|++++..+.. ..+++++.+++.+|++.|++|.
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99999999999999999888999999999999999999999655443 5678899999999999998873
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-38 Score=323.52 Aligned_cols=316 Identities=21% Similarity=0.293 Sum_probs=229.7
Q ss_pred eecCchhhhcCCCCCEEeccCCccccc-----------------CccccC--CCCCCCEEEccCCccCCC-CCccccccc
Q 042802 2 FGTIPSSITNASKLTVLELGGNTFSGF-----------------IPNTIG--NLRNHEWLNLANNSLTSS-TSKLSFLSS 61 (424)
Q Consensus 2 ~g~lp~~~~~~~~L~~L~l~~n~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~~-~~~~~~~~~ 61 (424)
+| ||++++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+. | ..
T Consensus 196 ~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p------~~ 268 (636)
T 4eco_A 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP------TF 268 (636)
T ss_dssp EE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC------TT
T ss_pred cc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh------HH
Confidence 46 899999999999999999999985 888888 999999999999988775 6 77
Q ss_pred ccCCccCceeeccCcc-CCc-cCChhHHhcc-----cccceeEeecCcCcccchh--hhcCCcccceeecccCccccccC
Q 042802 62 LANCKKLRNINLIGNP-LDG-FLPSSIGNLS-----MSLKTLIIANCSIIGNIRR--AIGNLSNLLALTLEGNKLTGPIP 132 (424)
Q Consensus 62 l~~l~~L~~L~l~~n~-~~~-~~~~~~~~l~-----~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~p 132 (424)
++++++|+.|++++|. +++ .+|..++.+. ++|++|++++|.+. .+|. .++++++|++|++++|.++|.+|
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 8899999999999998 887 7888888761 38999999999987 7777 88899999999999999888888
Q ss_pred cccCCCCCCCeEEccCCcccccCChhhcCCcc-cceEeccCCcCccCCCccCCCCC--CCCEEEccCCCCCC--------
Q 042802 133 ITFGRLQKLQGLDLAFNKLVGSFPDELCHLAR-LAEFVILGNKPSGSIPSCLSNLT--SLRSLYLGSNSLKD-------- 201 (424)
Q Consensus 133 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~n~l~~-------- 201 (424)
.++.+++|++|++++|++. .+|..+..+++ |+.|++++|.+. .+|..+..++ +|+.|++++|.+++
T Consensus 348 -~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 348 -AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp -CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred -hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 7888888888888888877 67777777777 888888888777 5666665543 67777777776532
Q ss_pred ----------ceeeeccCCcccccccccccccCcccEEECccCcccccCchh-hccC-------cCccEeeccCcccccc
Q 042802 202 ----------ILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPAT-IVGL-------KDLQFMDLAYNRSEGP 263 (424)
Q Consensus 202 ----------i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~l-------~~L~~L~ls~n~l~~~ 263 (424)
++.+++++|.+....+..+..+++|++|++++|.++ .+|.. +... ++|+.|++++|+++ .
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 502 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-K 502 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-B
T ss_pred cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-c
Confidence 456667777666433333444666666666666666 33332 2222 26666666666666 4
Q ss_pred chhhhc--CCCCCCEEECcCCCCCCCCcccccCCCCCCEEEc------ccccCcccCCCC-CcccccccccccCCcC
Q 042802 264 IPELFG--DLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNL------SFNKLEGEIPSG-GIFTSFIAESFMGNEL 331 (424)
Q Consensus 264 ~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l------~~n~l~~~~p~~-~~~~~l~~~~~~~n~~ 331 (424)
+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++ ++|++.+.+|.. ..+++++.+++.+|..
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 555554 66666666666666665 5666666666666666 345555555543 4455566666666654
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-38 Score=322.96 Aligned_cols=293 Identities=21% Similarity=0.292 Sum_probs=259.0
Q ss_pred cccccCccccCCCCCCCEEEccCCccCC------------------CCCccccccccc--CCccCceeeccCccCCccCC
Q 042802 24 TFSGFIPNTIGNLRNHEWLNLANNSLTS------------------STSKLSFLSSLA--NCKKLRNINLIGNPLDGFLP 83 (424)
Q Consensus 24 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~------------------~~~~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~ 83 (424)
.+++ +|..++++++|++|++++|.+++ +| ..++ ++++|++|++++|.+.+.+|
T Consensus 194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip------~~l~~~~l~~L~~L~L~~n~l~~~~p 266 (636)
T 4eco_A 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT------EDLKWDNLKDLTDVEVYNCPNLTKLP 266 (636)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT------SCCCGGGCTTCCEEEEECCTTCSSCC
T ss_pred CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc------hhhhhcccCCCCEEEecCCcCCccCh
Confidence 3345 78889999999999999999999 66 6778 99999999999999999999
Q ss_pred hhHHhcccccceeEeecCc-Ccc-cchhhhcCC------cccceeecccCccccccCc--ccCCCCCCCeEEccCCcccc
Q 042802 84 SSIGNLSMSLKTLIIANCS-IIG-NIRRAIGNL------SNLLALTLEGNKLTGPIPI--TFGRLQKLQGLDLAFNKLVG 153 (424)
Q Consensus 84 ~~~~~l~~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~L~~n~~~~ 153 (424)
..+++++ +|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .++.+++|++|++++|++.+
T Consensus 267 ~~l~~l~-~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g 344 (636)
T 4eco_A 267 TFLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEG 344 (636)
T ss_dssp TTTTTCS-SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred HHHhcCC-CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCcc
Confidence 9999995 99999999998 888 889888876 99999999999999 8898 89999999999999999998
Q ss_pred cCChhhcCCcccceEeccCCcCccCCCccCCCCCC-CCEEEccCCCCCC------------ceeeeccCCcccccccccc
Q 042802 154 SFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTS-LRSLYLGSNSLKD------------ILFFDFSSNFLVGPLSLDI 220 (424)
Q Consensus 154 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l~~------------i~~l~l~~n~~~~~~~~~l 220 (424)
.+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++. ++.+++++|.+.+..|..+
T Consensus 345 ~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 345 KLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp ECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred chh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence 899 8999999999999999998 78888999999 9999999998654 4789999999999999888
Q ss_pred c-------ccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhh-hcCC-------CCCCEEECcCCCCC
Q 042802 221 G-------NLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPEL-FGDL-------TSLEVLNLSKNKIS 285 (424)
Q Consensus 221 ~-------~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~-l~~l-------~~L~~L~L~~n~l~ 285 (424)
. .+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|.. +... ++|++|++++|.++
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred cccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC
Confidence 8 8889999999999999544445667999999999999999 55543 3333 29999999999999
Q ss_pred CCCccccc--CCCCCCEEEcccccCcccCCCC-CcccccccccccCCc
Q 042802 286 GPIPTSME--KLVYLRELNLSFNKLEGEIPSG-GIFTSFIAESFMGNE 330 (424)
Q Consensus 286 ~~~~~~l~--~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~n~ 330 (424)
.+|..+. .+++|+.|++++|++++ +|.. ..+++++.+++.+|+
T Consensus 502 -~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 502 -KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp -BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB
T ss_pred -ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc
Confidence 7788776 99999999999999998 6644 667889999996654
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=311.10 Aligned_cols=325 Identities=22% Similarity=0.214 Sum_probs=275.4
Q ss_pred cCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCC
Q 042802 4 TIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLP 83 (424)
Q Consensus 4 ~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 83 (424)
.+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++++. ..|.++++|+.|++++|.++...+
T Consensus 25 ~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP-----GAFNNLFNLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCCSCCT
T ss_pred cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh-----hhhhCCccCCEEECCCCcCCccCc
Confidence 4666553 689999999999998888999999999999999999998832 679999999999999999995555
Q ss_pred hhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCc
Q 042802 84 SSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLA 163 (424)
Q Consensus 84 ~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 163 (424)
..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..++
T Consensus 98 ~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 176 (477)
T 2id5_A 98 GVFTGL-SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176 (477)
T ss_dssp TSSTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCT
T ss_pred ccccCC-CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccC
Confidence 567777 4999999999999988889999999999999999999988888999999999999999999977777899999
Q ss_pred ccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCC-----------CceeeeccCCcccccccccccccCcccEEECc
Q 042802 164 RLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLK-----------DILFFDFSSNFLVGPLSLDIGNLKVLVRINLS 232 (424)
Q Consensus 164 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-----------~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~ 232 (424)
+|+.|++++|.+.+..+..+..+++|+.|++++|... .++.+++++|.+.+..+..+..+++|+.|+++
T Consensus 177 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 256 (477)
T 2id5_A 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256 (477)
T ss_dssp TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECC
T ss_pred CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECC
Confidence 9999999999999888889999999999999997643 35788888888886555678888889999999
Q ss_pred cCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccC
Q 042802 233 KNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEI 312 (424)
Q Consensus 233 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 312 (424)
+|.+++..+..|..+++|+.|++++|++++..|..|..+++|+.|+|++|.+++..+..+..+++|+.|++++|++.+..
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp SSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred CCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 99888777778888889999999999888888888888899999999999888777777888888999999999888765
Q ss_pred CCCCcccccccccccCCcCCcCCC
Q 042802 313 PSGGIFTSFIAESFMGNELLCGLP 336 (424)
Q Consensus 313 p~~~~~~~l~~~~~~~n~~lc~~~ 336 (424)
+....+.......+.++...|..|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 337 RLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp GGHHHHTTTTSSCCTTCCCBEEES
T ss_pred chHhHHhhhhccccCccCceeCCc
Confidence 432222233334566666677544
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-37 Score=314.66 Aligned_cols=197 Identities=22% Similarity=0.219 Sum_probs=153.2
Q ss_pred CCCCeEEccCCccccc--CChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCC------------Ccee
Q 042802 139 QKLQGLDLAFNKLVGS--FPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLK------------DILF 204 (424)
Q Consensus 139 ~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~------------~i~~ 204 (424)
++|++|++++|.+.+. .|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+. .++.
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 3444444555544433 25556666666666666666654 4466777888888888877543 2478
Q ss_pred eeccCCcccccccccccccCcccEEECccCcccc-cCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCC
Q 042802 205 FDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSG-DIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNK 283 (424)
Q Consensus 205 l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 283 (424)
+++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|++++..|..+..+++|++|++++|+
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 8888888888888888889999999999999887 478888899999999999999998888889999999999999999
Q ss_pred CCCCCcccccCCCCCCEEEcccccCcccCCCC-Cccc-ccccccccCCcCCcCCCC
Q 042802 284 ISGPIPTSMEKLVYLRELNLSFNKLEGEIPSG-GIFT-SFIAESFMGNELLCGLPN 337 (424)
Q Consensus 284 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~-~l~~~~~~~n~~lc~~~~ 337 (424)
+++..|..+..+++|++|++++|+++ .+|.. ..++ ++..+++.+|++.|+++.
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 99888889999999999999999998 45543 4444 588899999999998753
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=323.42 Aligned_cols=222 Identities=25% Similarity=0.264 Sum_probs=143.5
Q ss_pred hcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCC
Q 042802 111 IGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLR 190 (424)
Q Consensus 111 l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 190 (424)
+..+++|+.|++++|.+++..|..|..+++|++|++++|.+.+..|..|..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence 33444444555555555444444555555555555555555544455555555555555555555555555555566666
Q ss_pred EEEccCCCCCCc------eeeeccCCccc--------------------cc-ccccccccCcccEEECccCcccc-----
Q 042802 191 SLYLGSNSLKDI------LFFDFSSNFLV--------------------GP-LSLDIGNLKVLVRINLSKNNLSG----- 238 (424)
Q Consensus 191 ~L~l~~n~l~~i------~~l~l~~n~~~--------------------~~-~~~~l~~l~~L~~L~l~~n~l~~----- 238 (424)
.|++++|.++.+ +.+++++|.+. +. .+..+..+++|+.|++++|.+++
T Consensus 366 ~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 445 (844)
T 3j0a_A 366 TLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445 (844)
T ss_dssp EEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred EEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence 666666554431 22333333222 11 00112345566666666665542
Q ss_pred -------------------------cCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCccccc
Q 042802 239 -------------------------DIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSME 293 (424)
Q Consensus 239 -------------------------~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 293 (424)
..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+.
T Consensus 446 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 525 (844)
T 3j0a_A 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525 (844)
T ss_dssp SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence 2234467788999999999999988888899999999999999999977666665
Q ss_pred CCCCCCEEEcccccCcccCCCCCcccccccccccCCcCCcCCC
Q 042802 294 KLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGNELLCGLP 336 (424)
Q Consensus 294 ~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 336 (424)
++|+.|++++|++++..|.. +.++..+++.|||+.|+++
T Consensus 526 --~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 526 --ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp --SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred --ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 89999999999999888754 6688999999999999765
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-37 Score=321.16 Aligned_cols=316 Identities=19% Similarity=0.299 Sum_probs=205.2
Q ss_pred CchhhhcCCCCCEEeccCCcccc-----------------cCccccC--CCCCCCEEEccCCccCCC-CCcccccccccC
Q 042802 5 IPSSITNASKLTVLELGGNTFSG-----------------FIPNTIG--NLRNHEWLNLANNSLTSS-TSKLSFLSSLAN 64 (424)
Q Consensus 5 lp~~~~~~~~L~~L~l~~n~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~ 64 (424)
||+.++++++|++|++++|.+++ .+|..++ ++++|++|++++|.+.+. | ..+++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP------~~l~~ 513 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP------DFLYD 513 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC------GGGGG
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh------HHHhC
Confidence 55556666666666666666555 2555554 566666666666554443 3 45556
Q ss_pred CccCceeeccCcc-CCc-cCChhHHhcc------cccceeEeecCcCcccchh--hhcCCcccceeecccCccccccCcc
Q 042802 65 CKKLRNINLIGNP-LDG-FLPSSIGNLS------MSLKTLIIANCSIIGNIRR--AIGNLSNLLALTLEGNKLTGPIPIT 134 (424)
Q Consensus 65 l~~L~~L~l~~n~-~~~-~~~~~~~~l~------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~ 134 (424)
+++|+.|++++|. +++ .+|..++.+. ++|++|++++|.+. .+|. .+.++++|++|++++|.++ .+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 6666666666665 555 5555555541 15666666666665 4555 5666666666666666666 555 5
Q ss_pred cCCCCCCCeEEccCCcccccCChhhcCCcc-cceEeccCCcCccCCCccCCCCCC--CCEEEccCCCCC-----------
Q 042802 135 FGRLQKLQGLDLAFNKLVGSFPDELCHLAR-LAEFVILGNKPSGSIPSCLSNLTS--LRSLYLGSNSLK----------- 200 (424)
Q Consensus 135 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~l~----------- 200 (424)
++.+++|+.|++++|++. .+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.++
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 666666666666666665 55555666666 666666666665 45555544433 666666666542
Q ss_pred -----CceeeeccCCccccccccc-ccccCcccEEECccCcccccCchhhcc--------CcCccEeeccCccccccchh
Q 042802 201 -----DILFFDFSSNFLVGPLSLD-IGNLKVLVRINLSKNNLSGDIPATIVG--------LKDLQFMDLAYNRSEGPIPE 266 (424)
Q Consensus 201 -----~i~~l~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~p~~~~~--------l~~L~~L~ls~n~l~~~~~~ 266 (424)
.++.+++++|.+.. +|.. +..+++|+.|++++|.++ .+|..+.. +++|+.|+|++|+++ .+|.
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~ 745 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD 745 (876)
T ss_dssp TCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred cccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence 23566666666663 3433 346788889999998888 55554332 238999999999988 6777
Q ss_pred hhc--CCCCCCEEECcCCCCCCCCcccccCCCCCCEEEccc------ccCcccCCCC-CcccccccccccCCcCCcCCC
Q 042802 267 LFG--DLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSF------NKLEGEIPSG-GIFTSFIAESFMGNELLCGLP 336 (424)
Q Consensus 267 ~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~------n~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 336 (424)
.+. .+++|+.|+|++|.+++ +|..+..+++|+.|++++ |++.+.+|.. ..+++++.+++.+|.. -.+|
T Consensus 746 ~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence 776 88999999999999986 687888899999998876 7777777754 5677888888888875 3344
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.3e-37 Score=310.34 Aligned_cols=203 Identities=25% Similarity=0.252 Sum_probs=115.3
Q ss_pred hhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCC----------
Q 042802 110 AIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSI---------- 179 (424)
Q Consensus 110 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~---------- 179 (424)
.|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 3556677777777777777 56777777777777777777776555555555555555555555444322
Q ss_pred -----------------CccCCCCCCCCEEEccCCCCCC-----------ceeeeccCCccccccccc-ccccCcccEEE
Q 042802 180 -----------------PSCLSNLTSLRSLYLGSNSLKD-----------ILFFDFSSNFLVGPLSLD-IGNLKVLVRIN 230 (424)
Q Consensus 180 -----------------~~~l~~l~~L~~L~l~~n~l~~-----------i~~l~l~~n~~~~~~~~~-l~~l~~L~~L~ 230 (424)
+..+..+++|+.|++++|.+++ ++.+++++|.+.+..+.. +..+++|++|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 2334444444444444443221 245555555555443322 55556666666
Q ss_pred CccCcccccCchhhccCcCccEeeccCcccccc---chhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEccccc
Q 042802 231 LSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGP---IPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNK 307 (424)
Q Consensus 231 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 307 (424)
+++|.+.+..|..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|+
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 666666555555566666666666666665542 11335555555555555555555555555555555555555555
Q ss_pred CcccCC
Q 042802 308 LEGEIP 313 (424)
Q Consensus 308 l~~~~p 313 (424)
+++..|
T Consensus 512 l~~~~~ 517 (606)
T 3t6q_A 512 LTSSSI 517 (606)
T ss_dssp CCGGGG
T ss_pred cCcCCh
Confidence 554443
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.1e-37 Score=301.25 Aligned_cols=310 Identities=19% Similarity=0.174 Sum_probs=241.2
Q ss_pred eecCchhhhcCCCCCEEeccCCcccccC-ccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCc
Q 042802 2 FGTIPSSITNASKLTVLELGGNTFSGFI-PNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDG 80 (424)
Q Consensus 2 ~g~lp~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 80 (424)
++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++.+. ..++++++|++|++++|.+++
T Consensus 43 ~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~ 117 (455)
T 3v47_A 43 AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET-----GAFNGLANLEVLTLTQCNLDG 117 (455)
T ss_dssp CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-----TTTTTCTTCCEEECTTSCCBT
T ss_pred CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-----hhccCcccCCEEeCCCCCCCc
Confidence 4456888999999999999999987554 5679999999999999999988732 678999999999999999987
Q ss_pred cCChh--HHhcccccceeEeecCcCcccchhh-hcCCcccceeecccCccccccCcccCCC--CCCCeEEccCCcccccC
Q 042802 81 FLPSS--IGNLSMSLKTLIIANCSIIGNIRRA-IGNLSNLLALTLEGNKLTGPIPITFGRL--QKLQGLDLAFNKLVGSF 155 (424)
Q Consensus 81 ~~~~~--~~~l~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~p~~~~~l--~~L~~L~L~~n~~~~~~ 155 (424)
..+.. +..+ .+|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+..+..+ .+|+.|++++|.+.+..
T Consensus 118 ~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~ 196 (455)
T 3v47_A 118 AVLSGNFFKPL-TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196 (455)
T ss_dssp HHHHSSTTTTC-TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCS
T ss_pred cccCcccccCc-ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccc
Confidence 55554 7777 49999999999998887766 8899999999999999998777776654 34444444444443222
Q ss_pred Chh--------hcCCcccceEeccCCcCccCCCc-------------------------------------cCC--CCCC
Q 042802 156 PDE--------LCHLARLAEFVILGNKPSGSIPS-------------------------------------CLS--NLTS 188 (424)
Q Consensus 156 ~~~--------l~~l~~L~~L~l~~n~~~~~~~~-------------------------------------~l~--~l~~ 188 (424)
+.. +..+++|+.|++++|.+.+..|. .+. ..++
T Consensus 197 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (455)
T 3v47_A 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276 (455)
T ss_dssp TTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSC
T ss_pred hhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccC
Confidence 111 11233444444444433221111 111 1246
Q ss_pred CCEEEccCCCCCC-----------ceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccC
Q 042802 189 LRSLYLGSNSLKD-----------ILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAY 257 (424)
Q Consensus 189 L~~L~l~~n~l~~-----------i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~ 257 (424)
|+.|++++|.+++ ++.+++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence 7777777765432 36777777777777888999999999999999999988899999999999999999
Q ss_pred ccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCCCCc
Q 042802 258 NRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGI 317 (424)
Q Consensus 258 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 317 (424)
|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++.+|....
T Consensus 357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 416 (455)
T 3v47_A 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 416 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred CcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchH
Confidence 999988899999999999999999999987777889999999999999999999986533
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=304.90 Aligned_cols=134 Identities=23% Similarity=0.306 Sum_probs=92.6
Q ss_pred eeeeccCCccccccc-ccccccCcccEEECccCcccccCchhhccCcCccEeeccCcccc-ccchhhhcCCCCCCEEECc
Q 042802 203 LFFDFSSNFLVGPLS-LDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSE-GPIPELFGDLTSLEVLNLS 280 (424)
Q Consensus 203 ~~l~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~-~~~~~~l~~l~~L~~L~L~ 280 (424)
+.+++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|+++
T Consensus 399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478 (570)
T ss_dssp CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence 455555555555443 34566667777777777776666667777777777777777776 4566777777777777777
Q ss_pred CCCCCCCCcccccCCCCCCEEEcccccCcccCCCC-CcccccccccccCCcCCcCCC
Q 042802 281 KNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSG-GIFTSFIAESFMGNELLCGLP 336 (424)
Q Consensus 281 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 336 (424)
+|++++..|..+..+++|++|++++|++++..|.. ..+++++.+++.+|++.|++|
T Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 77777666777777777777777777777655543 456677777777777777665
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.4e-36 Score=298.85 Aligned_cols=110 Identities=22% Similarity=0.252 Sum_probs=58.8
Q ss_pred chhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCc-cCCh
Q 042802 6 PSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDG-FLPS 84 (424)
Q Consensus 6 p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~ 84 (424)
|..|..+++|++|++++|.+++..|..|+++++|++|++++|.++++|. . .+++|++|++++|.+++ .+|.
T Consensus 38 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~------~--~l~~L~~L~L~~N~l~~~~~p~ 109 (520)
T 2z7x_B 38 TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC------H--PTVNLKHLDLSFNAFDALPICK 109 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC------C--CCCCCSEEECCSSCCSSCCCCG
T ss_pred hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc------c--ccCCccEEeccCCccccccchh
Confidence 3455555555555555555555555555555555555555555555431 1 45555555665555554 3455
Q ss_pred hHHhcccccceeEeecCcCcccchhhhcCCccc--ceeecccCcc
Q 042802 85 SIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNL--LALTLEGNKL 127 (424)
Q Consensus 85 ~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l 127 (424)
.++.+. +|++|++++|.+.+ ..+..+++| ++|++++|.+
T Consensus 110 ~~~~l~-~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 110 EFGNMS-QLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp GGGGCT-TCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred hhccCC-cceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 555553 55555555555543 233344444 5555555554
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-35 Score=304.26 Aligned_cols=334 Identities=23% Similarity=0.245 Sum_probs=251.5
Q ss_pred ecCchhhhcCCC--CCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCC-ccc----------------------
Q 042802 3 GTIPSSITNASK--LTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTS-KLS---------------------- 57 (424)
Q Consensus 3 g~lp~~~~~~~~--L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~---------------------- 57 (424)
+..|..+..++. |++|++++|.+++..|..|+.+++|++|++++|.+++.+. .+.
T Consensus 236 ~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 315 (680)
T 1ziw_A 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315 (680)
T ss_dssp EECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-----
T ss_pred ccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc
Confidence 445566666544 7777777777777777777777777777777777765521 000
Q ss_pred -cc----ccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCccc--chhhhcC--CcccceeecccCccc
Q 042802 58 -FL----SSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGN--IRRAIGN--LSNLLALTLEGNKLT 128 (424)
Q Consensus 58 -~~----~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~--~~~~l~~--l~~L~~L~l~~n~l~ 128 (424)
+. ..+..+++|+.|++++|.+.+..+..+..++ +|++|++++|.+... ....+.. .++|+.|++++|.++
T Consensus 316 ~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~ 394 (680)
T 1ziw_A 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394 (680)
T ss_dssp -CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCT-TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC
T ss_pred cccccChhhcccCCCCCEEECCCCccCCCChhHhcccc-CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC
Confidence 00 1344555666666666666655555555553 666666666553211 1112222 246677777777777
Q ss_pred cccCcccCCCCCCCeEEccCCcccccCC-hhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCC-------
Q 042802 129 GPIPITFGRLQKLQGLDLAFNKLVGSFP-DELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLK------- 200 (424)
Q Consensus 129 ~~~p~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~------- 200 (424)
+..|..+..+++|+.|++++|.+.+.+| ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 395 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~ 474 (680)
T 1ziw_A 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSC
T ss_pred eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCc
Confidence 7778888889999999999999876655 67888999999999999988888888999999999999988753
Q ss_pred ------CceeeeccCCcccccccccccccCcccEEECccCcccccCc--------hhhccCcCccEeeccCccccccchh
Q 042802 201 ------DILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIP--------ATIVGLKDLQFMDLAYNRSEGPIPE 266 (424)
Q Consensus 201 ------~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p--------~~~~~l~~L~~L~ls~n~l~~~~~~ 266 (424)
.++.+++++|.+.+..+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|+++...+.
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~ 554 (680)
T 1ziw_A 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHH
Confidence 35889999999998888889999999999999999986422 2378899999999999999965556
Q ss_pred hhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCCC-C-cccccccccccCCcCCcCCCC
Q 042802 267 LFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSG-G-IFTSFIAESFMGNELLCGLPN 337 (424)
Q Consensus 267 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~-~~~~l~~~~~~~n~~lc~~~~ 337 (424)
.|..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|.. . .++++..+++.|||+.|+++.
T Consensus 555 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred HcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 7999999999999999999777777889999999999999999765543 2 578899999999999999763
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-35 Score=300.19 Aligned_cols=320 Identities=20% Similarity=0.238 Sum_probs=177.7
Q ss_pred CchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCCh
Q 042802 5 IPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPS 84 (424)
Q Consensus 5 lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 84 (424)
.|..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++.+. ..++++++|++|++++|.+++..+.
T Consensus 49 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n~i~~l~~~ 123 (606)
T 3t6q_A 49 QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-----TALSGPKALKHLFFIQTGISSIDFI 123 (606)
T ss_dssp CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-----TTTSSCTTCCEEECTTSCCSCGGGS
T ss_pred ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-----hhhcccccccEeeccccCcccCCcc
Confidence 34555666666666666666655555556666666666666665555421 3455555555555555555543333
Q ss_pred hHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCC--eEEccCCcccc---------
Q 042802 85 SIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQ--GLDLAFNKLVG--------- 153 (424)
Q Consensus 85 ~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~--~L~L~~n~~~~--------- 153 (424)
.++.+ .+|++|++++|.+.+.....+..+++|++|++++|.+++..|..++.+++|+ .|++++|.+.+
T Consensus 124 ~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~ 202 (606)
T 3t6q_A 124 PLHNQ-KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202 (606)
T ss_dssp CCTTC-TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTC
T ss_pred hhccC-CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhc
Confidence 44444 2455555555554432222233344455555555544443344444444444 34444443332
Q ss_pred ------------------------------------------------------------------cCChhhcCCcccce
Q 042802 154 ------------------------------------------------------------------SFPDELCHLARLAE 167 (424)
Q Consensus 154 ------------------------------------------------------------------~~~~~l~~l~~L~~ 167 (424)
..+..|..+++|++
T Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 282 (606)
T 3t6q_A 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282 (606)
T ss_dssp EEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSE
T ss_pred cccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCE
Confidence 22233444555555
Q ss_pred EeccCCcCccCCCccCCCCCCCCEEEccCCCCCC-----------ceeeeccCCccccccccc-ccccCcccEEECccCc
Q 042802 168 FVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD-----------ILFFDFSSNFLVGPLSLD-IGNLKVLVRINLSKNN 235 (424)
Q Consensus 168 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-----------i~~l~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~ 235 (424)
|++++|.+. .+|..+..+++|++|++++|.+++ ++.+++++|.+.+.++.. +..+++|++|++++|.
T Consensus 283 L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 283 LDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361 (606)
T ss_dssp EECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred EeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence 555555554 344455555555555555555433 255555555555444432 5566666666666666
Q ss_pred ccccC--chhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcc-cccCCCCCCEEEcccccCcccC
Q 042802 236 LSGDI--PATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPT-SMEKLVYLRELNLSFNKLEGEI 312 (424)
Q Consensus 236 l~~~~--p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~ 312 (424)
+++.. +..+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+..
T Consensus 362 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 441 (606)
T 3t6q_A 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441 (606)
T ss_dssp CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC
T ss_pred cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC
Confidence 66444 55566667777777777777666666677777777777777777655443 3667777777777777776655
Q ss_pred CCC-CcccccccccccCCcC
Q 042802 313 PSG-GIFTSFIAESFMGNEL 331 (424)
Q Consensus 313 p~~-~~~~~l~~~~~~~n~~ 331 (424)
|.. ..+++++.+++.+|..
T Consensus 442 ~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 442 EQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp TTTTTTCTTCCEEECTTCBC
T ss_pred HHHHhCCCCCCEEECCCCCC
Confidence 543 4566777777777763
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.5e-36 Score=279.75 Aligned_cols=256 Identities=32% Similarity=0.534 Sum_probs=230.2
Q ss_pred ccCceeeccCccCCc--cCChhHHhcccccceeEeec-CcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCC
Q 042802 66 KKLRNINLIGNPLDG--FLPSSIGNLSMSLKTLIIAN-CSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQ 142 (424)
Q Consensus 66 ~~L~~L~l~~n~~~~--~~~~~~~~l~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 142 (424)
.+++.|++++|.+.+ .+|..+..++ +|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578888999998888 7888888884 899999985 888888888899999999999999999888888899999999
Q ss_pred eEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCC-CCCEEEccCCCCCCceeeeccCCccccccccccc
Q 042802 143 GLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLT-SLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIG 221 (424)
Q Consensus 143 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~ 221 (424)
+|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.++ +.+|..+.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~-------------~~~~~~~~ 195 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-------------GKIPPTFA 195 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-------------EECCGGGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee-------------ccCChHHh
Confidence 999999999888888899999999999999999888888888887 8888888877654 34677788
Q ss_pred ccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEE
Q 042802 222 NLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLREL 301 (424)
Q Consensus 222 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 301 (424)
.++ |++|++++|.+++..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence 887 99999999999999999999999999999999999977766 8889999999999999999999999999999999
Q ss_pred EcccccCcccCCCCCcccccccccccCCcCCcCCCC
Q 042802 302 NLSFNKLEGEIPSGGIFTSFIAESFMGNELLCGLPN 337 (424)
Q Consensus 302 ~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~ 337 (424)
++++|+++|.+|....++++..+++.+|+++||.|.
T Consensus 274 ~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 274 NVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp ECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTS
T ss_pred ECcCCcccccCCCCccccccChHHhcCCCCccCCCC
Confidence 999999999999988899999999999999999764
No 17
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.2e-36 Score=298.70 Aligned_cols=141 Identities=20% Similarity=0.234 Sum_probs=95.5
Q ss_pred CchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCCh
Q 042802 5 IPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPS 84 (424)
Q Consensus 5 lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 84 (424)
+|..+. ++|++|++++|.+++..+..|+++++|++|++++|.+++++. ..|.++++|++|++++|.++ .+|.
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~-~lp~ 117 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-----HVFLFNQDLEYLDVSHNRLQ-NISC 117 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-----TTTTTCTTCCEEECTTSCCC-EECS
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-----HHhCCCCCCCEEECCCCcCC-ccCc
Confidence 565553 677788888887777666777777788888888777777632 56777777777777777777 5555
Q ss_pred hHHhcccccceeEeecCcCccc-chhhhcCCcccceeecccCccccccCcccCCCCCC--CeEEccCCcc--cccCChhh
Q 042802 85 SIGNLSMSLKTLIIANCSIIGN-IRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKL--QGLDLAFNKL--VGSFPDEL 159 (424)
Q Consensus 85 ~~~~l~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L--~~L~L~~n~~--~~~~~~~l 159 (424)
. .+ .+|++|++++|.+.+. .|..++++++|++|++++|.+++. .+..+++| ++|++++|.+ .+..|..+
T Consensus 118 ~--~l-~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 118 C--PM-ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp C--CC-TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred c--cc-ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccc
Confidence 5 45 4777777777777653 356777777777777777777642 34444444 7777777666 44444333
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.5e-36 Score=293.60 Aligned_cols=313 Identities=21% Similarity=0.218 Sum_probs=279.3
Q ss_pred CCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccc
Q 042802 15 LTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLK 94 (424)
Q Consensus 15 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~ 94 (424)
-+.++.+++.++ .+|..+ .+++++|++++|.+++++. ..|.++++|++|++++|.+++..|..+..++ +|+
T Consensus 13 ~~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~ 83 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQ-----DEFASFPHLEELELNENIVSAVEPGAFNNLF-NLR 83 (477)
T ss_dssp TTEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECT-----TTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCC
T ss_pred CCEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECH-----hHccCCCCCCEEECCCCccCEeChhhhhCCc-cCC
Confidence 467888888888 556555 3689999999999998843 6799999999999999999988899999995 999
Q ss_pred eeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCc
Q 042802 95 TLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNK 174 (424)
Q Consensus 95 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 174 (424)
+|++++|.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.
T Consensus 84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred EEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 99999999987777778999999999999999998888999999999999999999998888899999999999999999
Q ss_pred CccCCCccCCCCCCCCEEEccCCCCCC-----------ceeeeccCCcccccccccccccCcccEEECccCcccccCchh
Q 042802 175 PSGSIPSCLSNLTSLRSLYLGSNSLKD-----------ILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPAT 243 (424)
Q Consensus 175 ~~~~~~~~l~~l~~L~~L~l~~n~l~~-----------i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 243 (424)
+.+..+..+..+++|+.|++++|.+.. ++.+++++|...+.++.......+|++|++++|.+++..+..
T Consensus 164 l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 243 (477)
T 2id5_A 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243 (477)
T ss_dssp CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH
T ss_pred CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH
Confidence 998777789999999999999987654 478899998888888877777789999999999999665578
Q ss_pred hccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCCC-Ccccccc
Q 042802 244 IVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSG-GIFTSFI 322 (424)
Q Consensus 244 ~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~ 322 (424)
+..+++|+.|++++|.+++..+..+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|++++..+.. ..+++++
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccC
Confidence 999999999999999999888888999999999999999999988999999999999999999998654433 4567889
Q ss_pred cccccCCcCCcCCC
Q 042802 323 AESFMGNELLCGLP 336 (424)
Q Consensus 323 ~~~~~~n~~lc~~~ 336 (424)
.+++.+|++.|+++
T Consensus 324 ~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 324 TLILDSNPLACDCR 337 (477)
T ss_dssp EEECCSSCEECSGG
T ss_pred EEEccCCCccCccc
Confidence 99999999999854
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.1e-36 Score=307.59 Aligned_cols=320 Identities=19% Similarity=0.233 Sum_probs=275.9
Q ss_pred ecCchhhh--cCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCc-cCC--CCCcccccc-cccCCccCceeeccCc
Q 042802 3 GTIPSSIT--NASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNS-LTS--STSKLSFLS-SLANCKKLRNINLIGN 76 (424)
Q Consensus 3 g~lp~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~--~~~~~~~~~-~l~~l~~L~~L~l~~n 76 (424)
|.+|+.++ ++++|++|++++|.+.+.+|..|+++++|++|++++|. +++ +|..+.-+. .+..+++|+.|++++|
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred ccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 36999988 99999999999999999999999999999999999998 886 463221111 3445569999999999
Q ss_pred cCCccCCh--hHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCC-CCeEEccCCcccc
Q 042802 77 PLDGFLPS--SIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQK-LQGLDLAFNKLVG 153 (424)
Q Consensus 77 ~~~~~~~~--~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-L~~L~L~~n~~~~ 153 (424)
.++ .+|. .++.++ +|++|++++|.+. .+| .+..+++|++|++++|.+. .+|..+..+++ |+.|++++|.+.
T Consensus 559 ~L~-~ip~~~~l~~L~-~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 559 NLE-EFPASASLQKMV-KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK- 632 (876)
T ss_dssp CCC-BCCCHHHHTTCT-TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-
T ss_pred cCC-ccCChhhhhcCC-CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-
Confidence 999 8998 899995 9999999999997 777 8999999999999999999 89999999999 999999999998
Q ss_pred cCChhhcCCcc--cceEeccCCcCccCCCccC---C--CCCCCCEEEccCCCCCC-----------ceeeeccCCccccc
Q 042802 154 SFPDELCHLAR--LAEFVILGNKPSGSIPSCL---S--NLTSLRSLYLGSNSLKD-----------ILFFDFSSNFLVGP 215 (424)
Q Consensus 154 ~~~~~l~~l~~--L~~L~l~~n~~~~~~~~~l---~--~l~~L~~L~l~~n~l~~-----------i~~l~l~~n~~~~~ 215 (424)
.+|..+..++. |+.|++++|.+.+.+|... . .+++|+.|++++|.++. ++.+++++|.+. .
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ 711 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-S 711 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-C
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-c
Confidence 78888777654 9999999999988766432 2 34589999999998765 378999999988 4
Q ss_pred ccccccc--------cCcccEEECccCcccccCchhhc--cCcCccEeeccCccccccchhhhcCCCCCCEEECcC----
Q 042802 216 LSLDIGN--------LKVLVRINLSKNNLSGDIPATIV--GLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSK---- 281 (424)
Q Consensus 216 ~~~~l~~--------l~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~---- 281 (424)
+|..+.. +++|+.|+|++|.++ .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|+|++
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence 5554333 349999999999999 7888887 89999999999999997 788899999999999976
Q ss_pred --CCCCCCCcccccCCCCCCEEEcccccCcccCCCCCcccccccccccCCcCCc
Q 042802 282 --NKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGNELLC 333 (424)
Q Consensus 282 --n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc 333 (424)
|.+.+.+|..+..+++|+.|++++|++ +.+|.. .++++..+++++|+...
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 788889999999999999999999999 788876 44789999999998643
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-35 Score=299.53 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=70.6
Q ss_pred eeeeccCCcccccccccccccCcccEEECccCcccccCc-hhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcC
Q 042802 203 LFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIP-ATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSK 281 (424)
Q Consensus 203 ~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~ 281 (424)
+.+++++|.+.+ +|..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 379 ~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 379 RHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp CEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred cEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence 334444444333 23445555566666666666555544 4555666666666666666655555566666666666666
Q ss_pred CCCCC-CCcccccCCCCCCEEEcccccCcccCCCC-CcccccccccccCCc
Q 042802 282 NKISG-PIPTSMEKLVYLRELNLSFNKLEGEIPSG-GIFTSFIAESFMGNE 330 (424)
Q Consensus 282 n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~n~ 330 (424)
|.+.+ .+|..+..+++|++|++++|++++..|.. ..+++++.+++.+|.
T Consensus 458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 66654 24555556666666666666665544432 344555555555554
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.1e-35 Score=297.17 Aligned_cols=325 Identities=22% Similarity=0.298 Sum_probs=251.7
Q ss_pred cCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCC
Q 042802 4 TIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLP 83 (424)
Q Consensus 4 ~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 83 (424)
+||..+. +++++|||++|.+++..+.+|.++++|++|+|++|.+++++. .+|.++++|++|+|++|++++..+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~-----~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-----GAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-----TTTTTCTTCCEEECTTCCCCEECG
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcCh-----hHhcCCCCCCEEEccCCcCCCCCH
Confidence 4566553 479999999999998888899999999999999999998854 678999999999999999996666
Q ss_pred hhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCcccc-ccCcccCCCCCCCeEEccCCcccccCChhhcCC
Q 042802 84 SSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTG-PIPITFGRLQKLQGLDLAFNKLVGSFPDELCHL 162 (424)
Q Consensus 84 ~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 162 (424)
..|..+ .+|++|++++|++.+..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++.+..+..+..+
T Consensus 118 ~~f~~L-~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 118 GAFSGL-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GGGTTC-TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred HHhcCC-CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 778888 499999999999987777789999999999999999875 357788899999999999998765444333211
Q ss_pred c-------------------------------------------------------------------------------
Q 042802 163 A------------------------------------------------------------------------------- 163 (424)
Q Consensus 163 ~------------------------------------------------------------------------------- 163 (424)
.
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 276 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 276 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred hhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence 1
Q ss_pred ----------------------------------------------------ccceEeccCCcCccCCC-----------
Q 042802 164 ----------------------------------------------------RLAEFVILGNKPSGSIP----------- 180 (424)
Q Consensus 164 ----------------------------------------------------~L~~L~l~~n~~~~~~~----------- 180 (424)
.|+.|++.+|.+.+..+
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l 356 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 356 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEE
T ss_pred cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccc
Confidence 11122222221111000
Q ss_pred --------ccCCCCCCCCEEEccCCCCCC---------------------------------------------------
Q 042802 181 --------SCLSNLTSLRSLYLGSNSLKD--------------------------------------------------- 201 (424)
Q Consensus 181 --------~~l~~l~~L~~L~l~~n~l~~--------------------------------------------------- 201 (424)
.....+++|+.++++.|.+..
T Consensus 357 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 436 (635)
T 4g8a_A 357 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 436 (635)
T ss_dssp ESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTT
T ss_pred ccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccc
Confidence 011124455555555554321
Q ss_pred ----------ceeeeccCCcccccccccccccCcccEEECccCcc-cccCchhhccCcCccEeeccCccccccchhhhcC
Q 042802 202 ----------ILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNL-SGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGD 270 (424)
Q Consensus 202 ----------i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l-~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~ 270 (424)
+..++++.|.+.+..+..+..++.++.|++++|.+ .+..|..|..+++|++|++++|++++..|..|.+
T Consensus 437 ~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~ 516 (635)
T 4g8a_A 437 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516 (635)
T ss_dssp SSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred cccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcC
Confidence 14455666666666677777888899999999874 4457788999999999999999999988999999
Q ss_pred CCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCCC-Ccc-cccccccccCCcCCcCCC
Q 042802 271 LTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSG-GIF-TSFIAESFMGNELLCGLP 336 (424)
Q Consensus 271 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~-~~l~~~~~~~n~~lc~~~ 336 (424)
+++|++|+|++|++++..+..+..+++|++|++++|++++..|.. ..+ .+++.+++.+||+.|++.
T Consensus 517 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999999999999888889999999999999999999887765 333 578999999999999864
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.2e-36 Score=298.95 Aligned_cols=125 Identities=28% Similarity=0.355 Sum_probs=71.9
Q ss_pred eeeeccCCccccccc---ccccccCcccEEECccCcccccCc--hhhccCcCccEeeccCccccccchhhhcCCCCCCEE
Q 042802 203 LFFDFSSNFLVGPLS---LDIGNLKVLVRINLSKNNLSGDIP--ATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVL 277 (424)
Q Consensus 203 ~~l~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 277 (424)
+.+++++|.+.+.+| ..++.+++|++|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|
T Consensus 337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L 415 (549)
T 2z81_A 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFL 415 (549)
T ss_dssp CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEE
T ss_pred cEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEE
Confidence 556666666665443 224556666666666666654322 34556666666666666665 445555555555555
Q ss_pred ECcCCCCCCCCccc------------------ccCCCCCCEEEcccccCcccCCCCCcccccccccccCCc
Q 042802 278 NLSKNKISGPIPTS------------------MEKLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGNE 330 (424)
Q Consensus 278 ~L~~n~l~~~~~~~------------------l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~ 330 (424)
++++|.++.. |.. ...+++|++|++++|+++ .+|....+++++.+++++|.
T Consensus 416 ~Ls~N~l~~l-~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 416 NLSSTGIRVV-KTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQ 484 (549)
T ss_dssp ECTTSCCSCC-CTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSC
T ss_pred ECCCCCcccc-cchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCc
Confidence 5555555421 111 125667777777777776 56655556666777777665
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.3e-35 Score=277.94 Aligned_cols=304 Identities=19% Similarity=0.214 Sum_probs=258.6
Q ss_pred cCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcc
Q 042802 11 NASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLS 90 (424)
Q Consensus 11 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 90 (424)
.+++++.|++++|.++...+..|..+++|++|++++|.+++.+. ..+..+++|++|++++|.+++..|..++.++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-----YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh-----hhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 46899999999999987666667889999999999999988753 5788999999999999999977777788884
Q ss_pred cccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEec
Q 042802 91 MSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVI 170 (424)
Q Consensus 91 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 170 (424)
+|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+. .+..+++|+.|++
T Consensus 118 -~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l 193 (390)
T 3o6n_A 118 -LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 193 (390)
T ss_dssp -TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEEC
T ss_pred -CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeec
Confidence 899999999999765555678899999999999999977778899999999999999998754 3566788999999
Q ss_pred cCCcCccCCCccCCCCCCCCEEEccCCCCCC--------ceeeeccCCcccccccccccccCcccEEECccCcccccCch
Q 042802 171 LGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD--------ILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPA 242 (424)
Q Consensus 171 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--------i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 242 (424)
++|.+.+. ...++|+.|++++|.++. ++.+++++|.+.+. ..+..+++|++|++++|.+++..|.
T Consensus 194 ~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 194 SYNLLSTL-----AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CSSCCSEE-----ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccccccc-----CCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 99887643 334678999999888754 57888888888864 5788899999999999999988899
Q ss_pred hhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCCCCcccccc
Q 042802 243 TIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGIFTSFI 322 (424)
Q Consensus 243 ~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~ 322 (424)
.+..+++|+.|++++|++++ +|..+..+++|++|++++|++. .+|..+..+++|+.|++++|+++.. | ...++.+.
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~ 342 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLK 342 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCS
T ss_pred HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-chhhccCC
Confidence 99999999999999999985 5666788999999999999998 5677788899999999999999854 4 45678899
Q ss_pred cccccCCcCCcC
Q 042802 323 AESFMGNELLCG 334 (424)
Q Consensus 323 ~~~~~~n~~lc~ 334 (424)
.+++.+|++.|.
T Consensus 343 ~L~l~~N~~~~~ 354 (390)
T 3o6n_A 343 NLTLSHNDWDCN 354 (390)
T ss_dssp EEECCSSCEEHH
T ss_pred EEEcCCCCccch
Confidence 999999998885
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.9e-35 Score=293.17 Aligned_cols=178 Identities=22% Similarity=0.268 Sum_probs=148.3
Q ss_pred CCCCCeEEccCCcccccC--ChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCC------------ce
Q 042802 138 LQKLQGLDLAFNKLVGSF--PDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD------------IL 203 (424)
Q Consensus 138 l~~L~~L~L~~n~~~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------------i~ 203 (424)
+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+++ ++
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 344555555555554322 45566667777777777776654444 7888999999999886432 48
Q ss_pred eeeccCCcccccccccccccCcccEEECccCccc-ccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCC
Q 042802 204 FFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLS-GDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKN 282 (424)
Q Consensus 204 ~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n 282 (424)
.+++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 8999999999999999999999999999999997 578999999999999999999999888999999999999999999
Q ss_pred CCCCCCcccccCCCCCCEEEcccccCcccCCCCC
Q 042802 283 KISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGG 316 (424)
Q Consensus 283 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~ 316 (424)
.+++..+..+..+++|+.|++++|++++.+|...
T Consensus 505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred cCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 9998888889999999999999999999988753
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=288.05 Aligned_cols=309 Identities=22% Similarity=0.248 Sum_probs=220.0
Q ss_pred cCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCC-CCcccccccccCCccCceeeccCccCCccC
Q 042802 4 TIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSS-TSKLSFLSSLANCKKLRNINLIGNPLDGFL 82 (424)
Q Consensus 4 ~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 82 (424)
.+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++. | ..|+++++|++|++++|.++ .+
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~Ls~N~l~-~l 84 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI------SVFKFNQELEYLDLSHNKLV-KI 84 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG------GGGTTCTTCCEEECCSSCCC-EE
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh------HHhhcccCCCEEecCCCcee-ec
Confidence 5787776 8999999999999988888999999999999999999987 4 68999999999999999999 67
Q ss_pred ChhHHhcccccceeEeecCcCcc-cchhhhcCCcccceeecccCccccccCcccCCCCCC--CeEEccCCcc--cccCCh
Q 042802 83 PSSIGNLSMSLKTLIIANCSIIG-NIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKL--QGLDLAFNKL--VGSFPD 157 (424)
Q Consensus 83 ~~~~~~l~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L--~~L~L~~n~~--~~~~~~ 157 (424)
|.. .+ .+|++|++++|.+.+ .+|..++++++|++|++++|.+++ ..+..+++| +.|++++|.+ .+..|.
T Consensus 85 p~~--~l-~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~ 158 (520)
T 2z7x_B 85 SCH--PT-VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPE 158 (520)
T ss_dssp ECC--CC-CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTT
T ss_pred Ccc--cc-CCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccc
Confidence 766 56 599999999999987 478899999999999999999985 456677777 8999988888 555555
Q ss_pred hhcCCc--------------------------------------------------------------------------
Q 042802 158 ELCHLA-------------------------------------------------------------------------- 163 (424)
Q Consensus 158 ~l~~l~-------------------------------------------------------------------------- 163 (424)
.+..+.
T Consensus 159 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 238 (520)
T 2z7x_B 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238 (520)
T ss_dssp TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHH
T ss_pred cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHH
Confidence 554422
Q ss_pred ---------ccceEeccCCcCccCCCccC-----CCCCCCCEEEccCCCC------------------------------
Q 042802 164 ---------RLAEFVILGNKPSGSIPSCL-----SNLTSLRSLYLGSNSL------------------------------ 199 (424)
Q Consensus 164 ---------~L~~L~l~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~l------------------------------ 199 (424)
+|++|++++|.+.+.+|..+ ..+++|+.+++++|.+
T Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~ 318 (520)
T 2z7x_B 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318 (520)
T ss_dssp HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc
Confidence 56777777777777777766 5555555555544432
Q ss_pred -----CCceeeeccCCcccccccccccccCcccEEECccCcccc--cCchhhccCcCccEeeccCccccccchh-hhcCC
Q 042802 200 -----KDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSG--DIPATIVGLKDLQFMDLAYNRSEGPIPE-LFGDL 271 (424)
Q Consensus 200 -----~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~~~~-~l~~l 271 (424)
..++.+++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|. .+..+
T Consensus 319 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence 123566666666666666666666666666666666664 3445566666666666666666653443 25555
Q ss_pred CCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCC-CCcccccccccccCCc
Q 042802 272 TSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPS-GGIFTSFIAESFMGNE 330 (424)
Q Consensus 272 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~~~l~~~~~~~n~ 330 (424)
++|++|++++|.+++..|..+. ++|+.|++++|+++ .+|. ...+++++.+++.+|.
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCc
Confidence 6666666666666554444332 45666666666665 3443 2345555566666654
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=302.35 Aligned_cols=298 Identities=22% Similarity=0.264 Sum_probs=258.3
Q ss_pred cCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccC-CCCCcccccccccCCccCceeeccCccCCccC
Q 042802 4 TIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLT-SSTSKLSFLSSLANCKKLRNINLIGNPLDGFL 82 (424)
Q Consensus 4 ~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 82 (424)
.+|. ..++|++||+++|.+++..|..|+++++|++|++++|... .++. ..|.++++|++|+|++|.+.+..
T Consensus 18 ~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~-----~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 18 QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK-----EAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECT-----TTTSSCTTCCEEECTTCCCCEEC
T ss_pred CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCH-----HHhcCCCCCCEEECCCCcCcccC
Confidence 4666 4578999999999999888999999999999999999543 3322 67899999999999999999888
Q ss_pred ChhHHhcccccceeEeecCcCcccchhh--hcCCcccceeecccCccccccC-cccCCCCCCCeEEccCCcccccCChhh
Q 042802 83 PSSIGNLSMSLKTLIIANCSIIGNIRRA--IGNLSNLLALTLEGNKLTGPIP-ITFGRLQKLQGLDLAFNKLVGSFPDEL 159 (424)
Q Consensus 83 ~~~~~~l~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~~n~~~~~~~~~l 159 (424)
|..+..+. +|++|++++|.+.+..+.. +.++++|++|++++|.+++..+ ..++++++|++|++++|.+.+..+..+
T Consensus 90 p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 90 PDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp TTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred HhHccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence 99999884 9999999999998766655 8899999999999999986654 578999999999999999988888888
Q ss_pred cCC--cccceEeccCCcCccCCCccCCCCCC------CCEEEccCCCC--------------------------------
Q 042802 160 CHL--ARLAEFVILGNKPSGSIPSCLSNLTS------LRSLYLGSNSL-------------------------------- 199 (424)
Q Consensus 160 ~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~------L~~L~l~~n~l-------------------------------- 199 (424)
..+ ++|+.|++++|.+.+..|..+..+++ |+.|++++|.+
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 777 78999999999988887777776665 88999988843
Q ss_pred -----------------CCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccc
Q 042802 200 -----------------KDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEG 262 (424)
Q Consensus 200 -----------------~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~ 262 (424)
+.++.+++++|.+.+..+..+..+++|+.|++++|.+++..|..|..+++|++|++++|.+++
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 328 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc
Confidence 235778889999888888889999999999999999998888899999999999999999998
Q ss_pred cchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcc
Q 042802 263 PIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEG 310 (424)
Q Consensus 263 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 310 (424)
..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 329 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 888899999999999999999988777888999999999999999874
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.6e-34 Score=292.63 Aligned_cols=299 Identities=23% Similarity=0.264 Sum_probs=226.2
Q ss_pred cCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCC
Q 042802 4 TIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLP 83 (424)
Q Consensus 4 ~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 83 (424)
.+|..+. +++++|++++|.+++..+..|+++++|++|++++|.+++.+. ..++++++|++|++++|.++...+
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-----ELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-----THHHHCTTCCEEECCSSCCCCCCT
T ss_pred ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-----HHHhcccCcCEEECCCCccCccCh
Confidence 4777664 799999999999998888889999999999999999998842 678899999999999999995545
Q ss_pred hhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhc--C
Q 042802 84 SSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELC--H 161 (424)
Q Consensus 84 ~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~--~ 161 (424)
..++.+ .+|++|++++|.+.+..+..|+++++|++|++++|.+++..|..++.+++|++|++++|.+.+..+..+. .
T Consensus 91 ~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 91 KTFAFC-TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp TTTTTC-TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred hhhccC-CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence 578888 4999999999999887778899999999999999999988888899999999999999999877776654 5
Q ss_pred CcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCC--------------CCceeeeccCCcccccccccccccCc--
Q 042802 162 LARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSL--------------KDILFFDFSSNFLVGPLSLDIGNLKV-- 225 (424)
Q Consensus 162 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l--------------~~i~~l~l~~n~~~~~~~~~l~~l~~-- 225 (424)
+++|+.|++++|.+.+..|..+..+++|+.+++.++.+ +.++.+++++|.+.+..|..+..++.
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp TCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSC
T ss_pred cccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCC
Confidence 68999999999999988888888887777777766654 33566666666666666666665543
Q ss_pred ccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCC-----CCcc----cccCCC
Q 042802 226 LVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISG-----PIPT----SMEKLV 296 (424)
Q Consensus 226 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----~~~~----~l~~l~ 296 (424)
|+.|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++|...+ .+|. .+..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 6666666666666666666666666666666666665555555555555555555443322 1111 334444
Q ss_pred CCCEEEcccccCcc
Q 042802 297 YLRELNLSFNKLEG 310 (424)
Q Consensus 297 ~L~~L~l~~n~l~~ 310 (424)
+|++|++++|++.+
T Consensus 330 ~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 330 CLEHLNMEDNDIPG 343 (680)
T ss_dssp TCCEEECCSCCBCC
T ss_pred CCCEEECCCCccCC
Confidence 55555555555544
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3e-34 Score=289.10 Aligned_cols=304 Identities=19% Similarity=0.206 Sum_probs=254.4
Q ss_pred cCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcc
Q 042802 11 NASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLS 90 (424)
Q Consensus 11 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 90 (424)
.+++++.+++++|.+....+..|.++++|++|++++|.+++++. ..|..+++|+.|++++|.+++..|..++.++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-----YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh-----HHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 46788999999999887777778889999999999999888753 5788899999999999999877777778884
Q ss_pred cccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEec
Q 042802 91 MSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVI 170 (424)
Q Consensus 91 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 170 (424)
+|++|++++|.+.+..+..|.++++|++|++++|.+++..|..++.+++|++|++++|.+.+.. +..+++|+.|++
T Consensus 124 -~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l 199 (597)
T 3oja_B 124 -LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANV 199 (597)
T ss_dssp -TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEEC
T ss_pred -CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhc
Confidence 8999999999988666666788999999999999999888888999999999999999887542 556788889999
Q ss_pred cCCcCccCCCccCCCCCCCCEEEccCCCCCC--------ceeeeccCCcccccccccccccCcccEEECccCcccccCch
Q 042802 171 LGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD--------ILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPA 242 (424)
Q Consensus 171 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--------i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 242 (424)
++|.+.+. ...++|+.|++++|.++. +..+++++|.+.+. ..+..+++|+.|++++|.+++..|.
T Consensus 200 ~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 200 SYNLLSTL-----AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CSSCCSEE-----ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ccCccccc-----cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHH
Confidence 88877643 345678888888887653 57888888888873 5788899999999999999988889
Q ss_pred hhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCCCCcccccc
Q 042802 243 TIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGIFTSFI 322 (424)
Q Consensus 243 ~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~ 322 (424)
.|..+++|+.|++++|.+++ +|..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|++.+. | ...++.+.
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~L~ 348 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLK 348 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCS
T ss_pred HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C-hhhcCCCC
Confidence 99999999999999999985 5666778899999999999998 5777788899999999999999754 3 35577888
Q ss_pred cccccCCcCCcC
Q 042802 323 AESFMGNELLCG 334 (424)
Q Consensus 323 ~~~~~~n~~lc~ 334 (424)
.+++.+|++.|.
T Consensus 349 ~L~l~~N~~~~~ 360 (597)
T 3oja_B 349 NLTLSHNDWDCN 360 (597)
T ss_dssp EEECCSSCEEHH
T ss_pred EEEeeCCCCCCh
Confidence 999999998774
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-33 Score=270.27 Aligned_cols=309 Identities=20% Similarity=0.199 Sum_probs=260.3
Q ss_pred cCchh-hhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccC
Q 042802 4 TIPSS-ITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFL 82 (424)
Q Consensus 4 ~lp~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 82 (424)
.+|.. +..+++|++|++++|.+++..+..|+.+++|++|++++|.+++.+. ..++++++|+.|++++|.++ .+
T Consensus 59 ~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~-~l 132 (390)
T 3o6n_A 59 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQNVPLLTVLVLERNDLS-SL 132 (390)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCC-CC
T ss_pred hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-----HHhcCCCCCCEEECCCCccC-cC
Confidence 46665 6889999999999999998888899999999999999999999853 66899999999999999999 55
Q ss_pred Chh-HHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcC
Q 042802 83 PSS-IGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCH 161 (424)
Q Consensus 83 ~~~-~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 161 (424)
|.. +..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+.+ +..
T Consensus 133 ~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~ 203 (390)
T 3o6n_A 133 PRGIFHNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAI 203 (390)
T ss_dssp CTTTTTTC-TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EEC
T ss_pred CHHHhcCC-CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCC
Confidence 554 5777 4999999999999988888899999999999999999854 36678999999999998763 234
Q ss_pred CcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCC---------ceeeeccCCcccccccccccccCcccEEECc
Q 042802 162 LARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD---------ILFFDFSSNFLVGPLSLDIGNLKVLVRINLS 232 (424)
Q Consensus 162 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~---------i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~ 232 (424)
.++|+.|++++|.+..... ...++|+.|++++|.+++ ++.+++++|.+.+..|..+..+++|++|+++
T Consensus 204 ~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280 (390)
T ss_dssp CSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred CCcceEEECCCCeeeeccc---cccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence 5689999999998875532 235789999999998765 4788999999998889999999999999999
Q ss_pred cCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccC
Q 042802 233 KNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEI 312 (424)
Q Consensus 233 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 312 (424)
+|.+++ +|..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++.. + +..+++|+.|++++|++.+..
T Consensus 281 ~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 281 NNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp SSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred CCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchh
Confidence 999984 5667788999999999999998 5676788899999999999999854 3 678899999999999998653
Q ss_pred CCCCcccccccccccCCcCCcCCC
Q 042802 313 PSGGIFTSFIAESFMGNELLCGLP 336 (424)
Q Consensus 313 p~~~~~~~l~~~~~~~n~~lc~~~ 336 (424)
. ...+..+....+.+++..|..+
T Consensus 356 ~-~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 356 L-RALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp H-HHHTTTCCTTTBCCCCSCCCTT
T ss_pred H-HHHHHHHHhhcccccCceeccc
Confidence 2 2344555666677888788754
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.4e-34 Score=286.39 Aligned_cols=296 Identities=21% Similarity=0.236 Sum_probs=187.9
Q ss_pred cCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCC
Q 042802 4 TIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLP 83 (424)
Q Consensus 4 ~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 83 (424)
.+|+.+. ++|++|++++|.+++..|..|+++++|++|++++|.+++.+. ..|..+++|++|++++|.+++..+
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-----DAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTSCCCSCCH
T ss_pred cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-----hhccccccCCEEECCCCccCccCH
Confidence 3555443 567777777777776666667777777777777777766532 456667777777777777765555
Q ss_pred hhHHhcccccceeEeecCcCcc-cchhhhcCCcccceeecccCccccccC-cccCCCCCCCeEEccCCcccccCChhhcC
Q 042802 84 SSIGNLSMSLKTLIIANCSIIG-NIRRAIGNLSNLLALTLEGNKLTGPIP-ITFGRLQKLQGLDLAFNKLVGSFPDELCH 161 (424)
Q Consensus 84 ~~~~~l~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 161 (424)
..++.+ ++|++|++++|.+.+ ..|..+.++++|++|++++|.+.+.+| ..+..+++|++|++++|.+.+..|..+..
T Consensus 92 ~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 92 SWFGPL-SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHTTC-TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHhccC-CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 556666 367777777776654 234566667777777777766332333 45666677777777776666655555554
Q ss_pred ------------------------CcccceEeccCCcCccCC--C-ccCCCCCCCCEEEccCCCCC--------------
Q 042802 162 ------------------------LARLAEFVILGNKPSGSI--P-SCLSNLTSLRSLYLGSNSLK-------------- 200 (424)
Q Consensus 162 ------------------------l~~L~~L~l~~n~~~~~~--~-~~l~~l~~L~~L~l~~n~l~-------------- 200 (424)
+++|++|++++|.+.+.. + .....+++|+.|++++|.++
T Consensus 171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 455555555555555421 1 11122333333333332211
Q ss_pred ------------------------------------------------------------CceeeeccCCcccccccccc
Q 042802 201 ------------------------------------------------------------DILFFDFSSNFLVGPLSLDI 220 (424)
Q Consensus 201 ------------------------------------------------------------~i~~l~l~~n~~~~~~~~~l 220 (424)
.++.+++++|.+. .+|..+
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~ 329 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSF 329 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHH
Confidence 1233444444433 234433
Q ss_pred -cccCcccEEECccCcccccCch---hhccCcCccEeeccCccccccch--hhhcCCCCCCEEECcCCCCCCCCcccccC
Q 042802 221 -GNLKVLVRINLSKNNLSGDIPA---TIVGLKDLQFMDLAYNRSEGPIP--ELFGDLTSLEVLNLSKNKISGPIPTSMEK 294 (424)
Q Consensus 221 -~~l~~L~~L~l~~n~l~~~~p~---~~~~l~~L~~L~ls~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 294 (424)
..+++|++|++++|.+++..|. .+..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..
T Consensus 330 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 408 (549)
T 2z81_A 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408 (549)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC
T ss_pred HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc
Confidence 4678888888988888876643 36778888999999998876433 45788889999999999888 56777778
Q ss_pred CCCCCEEEcccccCc
Q 042802 295 LVYLRELNLSFNKLE 309 (424)
Q Consensus 295 l~~L~~L~l~~n~l~ 309 (424)
+++|++|++++|+++
T Consensus 409 ~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 409 PEKMRFLNLSSTGIR 423 (549)
T ss_dssp CTTCCEEECTTSCCS
T ss_pred cccccEEECCCCCcc
Confidence 888888888888876
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.6e-33 Score=283.72 Aligned_cols=311 Identities=19% Similarity=0.187 Sum_probs=263.1
Q ss_pred ecCchh-hhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCcc
Q 042802 3 GTIPSS-ITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGF 81 (424)
Q Consensus 3 g~lp~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 81 (424)
+.+|+. ++.+++|++|++++|.+++..|..|+.+++|++|++++|.+++++. ..|+++++|+.|++++|.+++.
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~l 138 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQNVPLLTVLVLERNDLSSL 138 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-----HHHcCCCCCCEEEeeCCCCCCC
Confidence 346654 6889999999999999998888899999999999999999999863 5689999999999999999954
Q ss_pred CChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcC
Q 042802 82 LPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCH 161 (424)
Q Consensus 82 ~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 161 (424)
.+..++.+ ++|++|++++|.+.+..|..+..+++|++|++++|.+++. .+..+++|+.|++++|.+.+ +..
T Consensus 139 ~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~ 209 (597)
T 3oja_B 139 PRGIFHNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAI 209 (597)
T ss_dssp CTTTTTTC-TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EEC
T ss_pred CHHHhccC-CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccC
Confidence 44556777 4999999999999998888999999999999999999864 35678899999999998864 334
Q ss_pred CcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCC---------ceeeeccCCcccccccccccccCcccEEECc
Q 042802 162 LARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD---------ILFFDFSSNFLVGPLSLDIGNLKVLVRINLS 232 (424)
Q Consensus 162 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~---------i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~ 232 (424)
.++|+.|++++|.+....+.. .++|+.|++++|.+++ ++.+++++|.+.+..|..+..+++|+.|+++
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred CchhheeeccCCccccccccc---CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence 567999999999887554332 3689999999988765 4788999999999899999999999999999
Q ss_pred cCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccC
Q 042802 233 KNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEI 312 (424)
Q Consensus 233 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 312 (424)
+|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|++|+|++|.+++.. +..+++|+.|++++|++.+..
T Consensus 287 ~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 287 NNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp TSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChh
Confidence 999995 5777788999999999999998 57777889999999999999998652 667899999999999998764
Q ss_pred CCCCcccccccccccCCcCCcCCC
Q 042802 313 PSGGIFTSFIAESFMGNELLCGLP 336 (424)
Q Consensus 313 p~~~~~~~l~~~~~~~n~~lc~~~ 336 (424)
.. ..+..+....+.+++..|+.+
T Consensus 362 ~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 362 LR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp HH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred HH-HHHHHHhhhccccccccCCcc
Confidence 32 345555666678888888854
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.8e-33 Score=280.33 Aligned_cols=121 Identities=20% Similarity=0.190 Sum_probs=83.5
Q ss_pred CchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCc-cCC
Q 042802 5 IPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDG-FLP 83 (424)
Q Consensus 5 lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~ 83 (424)
.|..|..+++|++|++++|.+++..|..|+++++|++|++++|.++.+|. . .+++|++|++++|.+++ ..|
T Consensus 68 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~------~--~l~~L~~L~Ls~N~l~~l~~p 139 (562)
T 3a79_B 68 RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC------C--PMASLRHLDLSFNDFDVLPVC 139 (562)
T ss_dssp CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS------C--CCTTCSEEECCSSCCSBCCCC
T ss_pred ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc------c--ccccCCEEECCCCCccccCch
Confidence 34677777788888888887777777777777788888888877776652 2 67777788888777775 345
Q ss_pred hhHHhcccccceeEeecCcCcccchhhhcCCccc--ceeecccCcc--ccccCcccCC
Q 042802 84 SSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNL--LALTLEGNKL--TGPIPITFGR 137 (424)
Q Consensus 84 ~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~p~~~~~ 137 (424)
..++.++ +|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..+..
T Consensus 140 ~~~~~l~-~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~ 193 (562)
T 3a79_B 140 KEFGNLT-KLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193 (562)
T ss_dssp GGGGGCT-TCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred HhhcccC-cccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccc
Confidence 6777773 788888877777543 33444444 7777777777 5555554443
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.2e-34 Score=266.73 Aligned_cols=250 Identities=30% Similarity=0.412 Sum_probs=212.4
Q ss_pred CCCCEEEccCCccCC---CCCcccccccccCCccCceeeccC-ccCCccCChhHHhcccccceeEeecCcCcccchhhhc
Q 042802 37 RNHEWLNLANNSLTS---STSKLSFLSSLANCKKLRNINLIG-NPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIG 112 (424)
Q Consensus 37 ~~L~~L~l~~n~l~~---~~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~ 112 (424)
.+++.|++++|.+++ +| ..+.++++|++|++++ |.+.+.+|..++.++ +|++|++++|.+.+.+|..+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~------~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP------SSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC------GGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCCCCccCCcccC------hhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHh
Confidence 578888888888875 35 6788888888888884 888888888888884 899999998888888888888
Q ss_pred CCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCc-ccceEeccCCcCccCCCccCCCCCCCCE
Q 042802 113 NLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLA-RLAEFVILGNKPSGSIPSCLSNLTSLRS 191 (424)
Q Consensus 113 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 191 (424)
++++|++|++++|.+++.+|..+..+++|++|++++|++.+.+|..+..++ +|+.|++++|.+.+..|..+..++ |+.
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence 888999999999988888888888889999999999988888888888887 889999999988888888888776 888
Q ss_pred EEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCC
Q 042802 192 LYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDL 271 (424)
Q Consensus 192 L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l 271 (424)
|++++|.++ +..|..+..+++|+.|++++|.+++..|. +..+++|++|++++|++++.+|..+..+
T Consensus 202 L~Ls~N~l~-------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 267 (313)
T 1ogq_A 202 VDLSRNMLE-------------GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL 267 (313)
T ss_dssp EECCSSEEE-------------ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred EECcCCccc-------------CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcC
Confidence 877777654 34677788889999999999999866665 7788999999999999998899999999
Q ss_pred CCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCc
Q 042802 272 TSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLE 309 (424)
Q Consensus 272 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 309 (424)
++|++|++++|++++.+|.. ..+++|+.+++++|+..
T Consensus 268 ~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 268 KFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp TTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred cCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 99999999999999888876 78889999999999843
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.2e-32 Score=259.03 Aligned_cols=296 Identities=22% Similarity=0.308 Sum_probs=236.5
Q ss_pred hhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHh
Q 042802 9 ITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGN 88 (424)
Q Consensus 9 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 88 (424)
+..+++|+.|+++++.+.. ++ .+..+++|++|++++|.+++++ . +..+++|++|++++|.++. ++ .+..
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~------~-~~~l~~L~~L~L~~n~i~~-~~-~~~~ 108 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDIS------P-LSNLVKLTNLYIGTNKITD-IS-ALQN 108 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG------G-GTTCTTCCEEECCSSCCCC-CG-GGTT
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccch------h-hhcCCcCCEEEccCCcccC-ch-HHcC
Confidence 4567888899998888874 34 3778888999999888888764 3 7788888899998888874 33 5777
Q ss_pred cccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceE
Q 042802 89 LSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEF 168 (424)
Q Consensus 89 l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 168 (424)
+ ++|++|++++|.+.+..+ +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|+.|
T Consensus 109 l-~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L 182 (347)
T 4fmz_A 109 L-TNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182 (347)
T ss_dssp C-TTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred C-CcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEE
Confidence 7 488899998888865433 778888888888888655333 347888888888888888774433 7788888888
Q ss_pred eccCCcCccCCCccCCCCCCCCEEEccCCCCCC---------ceeeeccCCcccccccccccccCcccEEECccCccccc
Q 042802 169 VILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD---------ILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGD 239 (424)
Q Consensus 169 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~---------i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 239 (424)
++++|.+.+..+ +..+++|+.+++++|.+++ ++.+++++|.+.+..+ +..+++|++|++++|.+++.
T Consensus 183 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp ECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred EccCCccccccc--ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC
Confidence 888888875443 7778888888888887655 3778888888776544 88899999999999998853
Q ss_pred CchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCCCCccc
Q 042802 240 IPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGIFT 319 (424)
Q Consensus 240 ~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~ 319 (424)
..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..| ...++
T Consensus 259 --~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~ 333 (347)
T 4fmz_A 259 --NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLS 333 (347)
T ss_dssp --GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCT
T ss_pred --hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhh
Confidence 4678899999999999999864 358889999999999999998888889999999999999999987666 66778
Q ss_pred ccccccccCCc
Q 042802 320 SFIAESFMGNE 330 (424)
Q Consensus 320 ~l~~~~~~~n~ 330 (424)
.++.+++.+|+
T Consensus 334 ~L~~L~l~~N~ 344 (347)
T 4fmz_A 334 KMDSADFANQV 344 (347)
T ss_dssp TCSEESSSCC-
T ss_pred ccceeehhhhc
Confidence 88889998886
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.3e-32 Score=266.29 Aligned_cols=301 Identities=24% Similarity=0.360 Sum_probs=192.7
Q ss_pred CchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCCh
Q 042802 5 IPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPS 84 (424)
Q Consensus 5 lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 84 (424)
+| .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++.+ . +.++++|++|++++|.+++. +.
T Consensus 61 l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~------~-~~~l~~L~~L~L~~n~l~~~-~~ 129 (466)
T 1o6v_A 61 ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT------P-LANLTNLTGLTLFNNQITDI-DP 129 (466)
T ss_dssp CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG------G-GTTCTTCCEEECCSSCCCCC-GG
T ss_pred Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccCh------h-hcCCCCCCEEECCCCCCCCC-hH
Confidence 44 37778888999998888886544 888888888888888888764 3 77888888888888888743 33
Q ss_pred hHHhcccccceeEeecCcCcccch-------------------hhhcCCcccceeecccCccccccCcccCCCCCCCeEE
Q 042802 85 SIGNLSMSLKTLIIANCSIIGNIR-------------------RAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLD 145 (424)
Q Consensus 85 ~~~~l~~~L~~L~l~~n~l~~~~~-------------------~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 145 (424)
+..+ ++|++|++++|.+.+... ..+.++++|++|++++|.+.+ + ..+..+++|++|+
T Consensus 130 -~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~ 205 (466)
T 1o6v_A 130 -LKNL-TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-I-SVLAKLTNLESLI 205 (466)
T ss_dssp -GTTC-TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEE
T ss_pred -HcCC-CCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEE
Confidence 6666 488888888887754311 113444555555555555542 2 2245555555555
Q ss_pred ccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCC---------ceeeeccCCcccccc
Q 042802 146 LAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD---------ILFFDFSSNFLVGPL 216 (424)
Q Consensus 146 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~---------i~~l~l~~n~~~~~~ 216 (424)
+++|.+.+..| +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++ ++.+++++|.+.+..
T Consensus 206 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 281 (466)
T 1o6v_A 206 ATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 281 (466)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG
T ss_pred ecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccc
Confidence 55555554333 44555566666666555532 235556666666666665443 255666666665543
Q ss_pred cccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCC
Q 042802 217 SLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLV 296 (424)
Q Consensus 217 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 296 (424)
+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..| +..+++|+.|++++|.+++. ..+..++
T Consensus 282 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~ 353 (466)
T 1o6v_A 282 P--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLT 353 (466)
T ss_dssp G--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred c--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCC
Confidence 3 5566666666666666664333 5666777777777777765544 55667777777777777654 3566777
Q ss_pred CCCEEEcccccCcccCCCCCcccccccccccCCcCCc
Q 042802 297 YLRELNLSFNKLEGEIPSGGIFTSFIAESFMGNELLC 333 (424)
Q Consensus 297 ~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc 333 (424)
+|+.|++++|++++..| ...++.+..+++.+|++..
T Consensus 354 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 354 NINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 77777777777776665 4556667777777776443
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.1e-32 Score=254.46 Aligned_cols=287 Identities=20% Similarity=0.255 Sum_probs=232.6
Q ss_pred CCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhccccc
Q 042802 14 KLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSL 93 (424)
Q Consensus 14 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L 93 (424)
+++.++++++.++ .+|..+. ++|++|++++|.+++++. ..+.++++|++|++++|.+++..|..+..++ +|
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L 102 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKD-----GDFKNLKNLHTLILINNKISKISPGAFAPLV-KL 102 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCT-----TTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeCh-----hhhccCCCCCEEECCCCcCCeeCHHHhcCCC-CC
Confidence 7899999999888 4565443 789999999999998863 5688999999999999999977788898884 99
Q ss_pred ceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccc--cCChhhcCCcccceEecc
Q 042802 94 KTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVG--SFPDELCHLARLAEFVIL 171 (424)
Q Consensus 94 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~ 171 (424)
++|++++|.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+++|+.|+++
T Consensus 103 ~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred CEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 99999999986 4555443 789999999999997777778999999999999999853 667788999999999999
Q ss_pred CCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCcc
Q 042802 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQ 251 (424)
Q Consensus 172 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 251 (424)
+|.+.. +|..+. ++|+.|++++|.++++ .+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 180 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 243 (330)
T 1xku_A 180 DTNITT-IPQGLP--PSLTELHLDGNKITKV-------------DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243 (330)
T ss_dssp SSCCCS-CCSSCC--TTCSEEECTTSCCCEE-------------CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred CCcccc-CCcccc--ccCCEEECCCCcCCcc-------------CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCC
Confidence 999885 444433 7888888888877653 466788899999999999999988787899999999
Q ss_pred EeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccC------CCCCCEEEcccccCcc-cCCCC--Ccccccc
Q 042802 252 FMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEK------LVYLRELNLSFNKLEG-EIPSG--GIFTSFI 322 (424)
Q Consensus 252 ~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~l~~n~l~~-~~p~~--~~~~~l~ 322 (424)
+|++++|+++ .+|..+..+++|++|++++|++++..+..+.. .+.++.+++++|++.. .++.. .....+.
T Consensus 244 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~ 322 (330)
T 1xku_A 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322 (330)
T ss_dssp EEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred EEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccccee
Confidence 9999999998 67888899999999999999999776666643 3788999999999863 22211 3344566
Q ss_pred cccccCC
Q 042802 323 AESFMGN 329 (424)
Q Consensus 323 ~~~~~~n 329 (424)
.+++.+|
T Consensus 323 ~l~L~~N 329 (330)
T 1xku_A 323 AVQLGNY 329 (330)
T ss_dssp GEEC---
T ss_pred EEEeccc
Confidence 6677666
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.4e-32 Score=255.39 Aligned_cols=297 Identities=22% Similarity=0.294 Sum_probs=232.5
Q ss_pred cCchhhhcC------CCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCcc
Q 042802 4 TIPSSITNA------SKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNP 77 (424)
Q Consensus 4 ~lp~~~~~~------~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 77 (424)
.+|..+... .+++.++++++.++ .+|..+ .++|++|++++|.+++++. ..+.++++|++|++++|.
T Consensus 18 ~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~ 89 (332)
T 2ft3_A 18 SLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRK-----DDFKGLQHLYALVLVNNK 89 (332)
T ss_dssp -------CCCCSSCEEETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSSC
T ss_pred cCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCH-----hHhhCCCCCcEEECCCCc
Confidence 456555432 37999999999988 566555 3789999999999988743 578999999999999999
Q ss_pred CCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCccc--ccC
Q 042802 78 LDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLV--GSF 155 (424)
Q Consensus 78 ~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~--~~~ 155 (424)
+++..|..+..++ +|++|++++|.+. .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+. +..
T Consensus 90 l~~~~~~~~~~l~-~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 165 (332)
T 2ft3_A 90 ISKIHEKAFSPLR-KLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165 (332)
T ss_dssp CCEECGGGSTTCT-TCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC
T ss_pred cCccCHhHhhCcC-CCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC
Confidence 9988888898884 9999999999986 4555444 89999999999999766667899999999999999985 356
Q ss_pred ChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCc
Q 042802 156 PDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNN 235 (424)
Q Consensus 156 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 235 (424)
+..+..+ +|+.|++++|.+.+ +|..+. ++|+.|++++|.++++ .+..+..+++|++|++++|.
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~-------------~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAI-------------ELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCC-------------CTTSSTTCTTCSCCBCCSSC
T ss_pred cccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCcc-------------CHHHhcCCCCCCEEECCCCc
Confidence 7777777 99999999999886 454443 6888888888877653 45678889999999999999
Q ss_pred ccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccC------CCCCCEEEcccccCc
Q 042802 236 LSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEK------LVYLRELNLSFNKLE 309 (424)
Q Consensus 236 l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~l~~n~l~ 309 (424)
+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+.. .+.|+.+++++|++.
T Consensus 229 l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 99877778999999999999999998 67878899999999999999998776666654 367899999999986
Q ss_pred --ccCCCC-CcccccccccccCCc
Q 042802 310 --GEIPSG-GIFTSFIAESFMGNE 330 (424)
Q Consensus 310 --~~~p~~-~~~~~l~~~~~~~n~ 330 (424)
+..|.. ...+.+..+.+.+|.
T Consensus 308 ~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 308 YWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccCcccccccchhhhhhccccc
Confidence 222321 345566777776664
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.9e-31 Score=259.30 Aligned_cols=295 Identities=21% Similarity=0.169 Sum_probs=214.5
Q ss_pred cCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCC
Q 042802 4 TIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLP 83 (424)
Q Consensus 4 ~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 83 (424)
.-+..++++++|++|++++|.+++. | .++.+++|++|++++|.++++| ++.+++|++|++++|.+++. +
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~--------~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD--------LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC--------CTTCTTCSEEECCSSCCSCC-C
T ss_pred ccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc--------cccCCCCCEEECcCCCCcee-e
Confidence 3456778899999999999999864 5 6889999999999999998863 77889999999999999864 4
Q ss_pred hhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCc
Q 042802 84 SSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLA 163 (424)
Q Consensus 84 ~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 163 (424)
++.+ ++|++|++++|.+.+. + +..+++|++|++++|.+++ + .++.+++|++|++++|...+.+ .+..++
T Consensus 102 --~~~l-~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 102 --VTPL-TKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp --CTTC-TTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred --cCCC-CcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCC
Confidence 6777 4899999999998764 3 7888999999999999986 3 3778889999999988655555 467788
Q ss_pred ccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCC--------ceeeeccCCcccccccccccccCcccEEECccCc
Q 042802 164 RLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD--------ILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNN 235 (424)
Q Consensus 164 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--------i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 235 (424)
+|+.|++++|.+++. | +..+++|+.|++++|.+++ ++.+++++|.+.+ +| +..+++|++|++++|.
T Consensus 171 ~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 171 QLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp TCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred cCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCc
Confidence 889999988888863 3 7788888888888887654 4778888888887 45 7778888888888888
Q ss_pred ccccCchhhccCc-------CccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcc--------cccCCCCCCE
Q 042802 236 LSGDIPATIVGLK-------DLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPT--------SMEKLVYLRE 300 (424)
Q Consensus 236 l~~~~p~~~~~l~-------~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--------~l~~l~~L~~ 300 (424)
+++..+..+..+. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. .+..+++|++
T Consensus 245 l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~ 322 (457)
T 3bz5_A 245 LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY 322 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred CCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCE
Confidence 8866554444443 44555666665555554 34556666666666655444432 1334455666
Q ss_pred EEcccccCcccCCCCCcccccccccccCCc
Q 042802 301 LNLSFNKLEGEIPSGGIFTSFIAESFMGNE 330 (424)
Q Consensus 301 L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~ 330 (424)
|++++|++++ ++ ...++.++.+++.+|.
T Consensus 323 L~L~~N~l~~-l~-l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 323 LYLNNTELTE-LD-VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp EECTTCCCSC-CC-CTTCTTCSEEECCSSC
T ss_pred EECCCCcccc-cc-cccCCcCcEEECCCCC
Confidence 6666666655 22 3344555555555554
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1e-31 Score=272.78 Aligned_cols=302 Identities=22% Similarity=0.181 Sum_probs=228.9
Q ss_pred chhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChh
Q 042802 6 PSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSS 85 (424)
Q Consensus 6 p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 85 (424)
|.+|.++++|++|++++|.+++..+.+|.++++|++|+|++|+++++|. ..|.++++|++|++++|.+++..+..
T Consensus 69 ~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~-----~~f~~L~~L~~L~Ls~N~l~~l~~~~ 143 (635)
T 4g8a_A 69 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-----GAFSGLSSLQKLVAVETNLASLENFP 143 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG-----GGGTTCTTCCEEECTTSCCCCSTTCC
T ss_pred HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH-----HHhcCCCCCCEEECCCCcCCCCChhh
Confidence 4678899999999999999988888889999999999999999988863 56888888888888888888655556
Q ss_pred HHhcccccceeEeecCcCccc-chhhhcCCcccceeecccCccccccCcccCCC--------------------------
Q 042802 86 IGNLSMSLKTLIIANCSIIGN-IRRAIGNLSNLLALTLEGNKLTGPIPITFGRL-------------------------- 138 (424)
Q Consensus 86 ~~~l~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l-------------------------- 138 (424)
++.++ +|++|++++|.+.+. .|..+..+++|++|++++|.+++..+..+..+
T Consensus 144 ~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~ 222 (635)
T 4g8a_A 144 IGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 222 (635)
T ss_dssp CTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT
T ss_pred hhcCc-ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccccc
Confidence 77774 888888888888653 56777888888888888887654333222111
Q ss_pred --------------------------------------------------------------------------------
Q 042802 139 -------------------------------------------------------------------------------- 138 (424)
Q Consensus 139 -------------------------------------------------------------------------------- 138 (424)
T Consensus 223 ~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 302 (635)
T 4g8a_A 223 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF 302 (635)
T ss_dssp TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTT
T ss_pred chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhh
Confidence
Q ss_pred -------------------------CCCCeEEccCCcccccCC-------------------hhhcCCcccceEeccCCc
Q 042802 139 -------------------------QKLQGLDLAFNKLVGSFP-------------------DELCHLARLAEFVILGNK 174 (424)
Q Consensus 139 -------------------------~~L~~L~L~~n~~~~~~~-------------------~~l~~l~~L~~L~l~~n~ 174 (424)
..|+.|++.+|.+....+ .....+++|+.++++.|.
T Consensus 303 ~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~ 382 (635)
T 4g8a_A 303 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 382 (635)
T ss_dssp GGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSC
T ss_pred hhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccc
Confidence 112222222222211000 011234455555555554
Q ss_pred Cc-------------------------------------------------cC-CCccCCCCCCCCEEEccCCCCCC---
Q 042802 175 PS-------------------------------------------------GS-IPSCLSNLTSLRSLYLGSNSLKD--- 201 (424)
Q Consensus 175 ~~-------------------------------------------------~~-~~~~l~~l~~L~~L~l~~n~l~~--- 201 (424)
+. .. .+..+..+++++.++++.|.+..
T Consensus 383 l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~ 462 (635)
T 4g8a_A 383 LSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 462 (635)
T ss_dssp CBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred cccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccc
Confidence 32 11 12345667778888888876533
Q ss_pred --------ceeeeccCCccc-ccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCC
Q 042802 202 --------ILFFDFSSNFLV-GPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLT 272 (424)
Q Consensus 202 --------i~~l~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~ 272 (424)
++.+++++|... +..|..+..+++|++|++++|.+++..|..|.++++|++|+|++|++++..|..|..++
T Consensus 463 ~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 542 (635)
T 4g8a_A 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 542 (635)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCT
T ss_pred cccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCC
Confidence 478999999754 45778899999999999999999999999999999999999999999998899999999
Q ss_pred CCCEEECcCCCCCCCCcccccCC-CCCCEEEcccccCcccCC
Q 042802 273 SLEVLNLSKNKISGPIPTSMEKL-VYLRELNLSFNKLEGEIP 313 (424)
Q Consensus 273 ~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p 313 (424)
+|++|+|++|++++..|..+..+ ++|++|++++|++.+...
T Consensus 543 ~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 543 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 99999999999999999999888 689999999999998765
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4.8e-31 Score=246.36 Aligned_cols=268 Identities=18% Similarity=0.221 Sum_probs=229.5
Q ss_pred CCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcc
Q 042802 37 RNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSN 116 (424)
Q Consensus 37 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~ 116 (424)
.+++.++++++.++.+|. .+. +.|+.|++++|.+++..+..+..++ +|++|++++|.+.+..|..+..+++
T Consensus 31 c~l~~l~~~~~~l~~lp~------~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPK------DLP--PDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVK 101 (330)
T ss_dssp EETTEEECTTSCCCSCCC------SCC--TTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CCCeEEEecCCCccccCc------cCC--CCCeEEECCCCcCCEeChhhhccCC-CCCEEECCCCcCCeeCHHHhcCCCC
Confidence 378999999999998873 332 6899999999999977777888884 9999999999998888999999999
Q ss_pred cceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCcc--CCCccCCCCCCCCEEEc
Q 042802 117 LLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSG--SIPSCLSNLTSLRSLYL 194 (424)
Q Consensus 117 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l 194 (424)
|++|++++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++
T Consensus 102 L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 102 LERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp CCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 999999999998 5666554 799999999999997777889999999999999999863 67778899999999999
Q ss_pred cCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCC
Q 042802 195 GSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSL 274 (424)
Q Consensus 195 ~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L 274 (424)
++|.++. +|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|
T Consensus 179 ~~n~l~~--------------l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 242 (330)
T 1xku_A 179 ADTNITT--------------IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242 (330)
T ss_dssp CSSCCCS--------------CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred CCCcccc--------------CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence 9998876 333332 789999999999998888999999999999999999998877789999999
Q ss_pred CEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCCCC-------cccccccccccCCcCCc
Q 042802 275 EVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGG-------IFTSFIAESFMGNELLC 333 (424)
Q Consensus 275 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-------~~~~l~~~~~~~n~~lc 333 (424)
++|++++|.++ .+|..+..+++|++|++++|++++..+... ....+..+++.+||..+
T Consensus 243 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 99999999998 778889999999999999999985433221 23566788899999765
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=7.1e-31 Score=247.00 Aligned_cols=277 Identities=25% Similarity=0.390 Sum_probs=236.9
Q ss_pred hhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHH
Q 042802 8 SITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIG 87 (424)
Q Consensus 8 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 87 (424)
.+..+++|++|++++|.+++..+ +..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+ ++. +.
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~-------~~~~~l~~L~~L~l~~n~i~~-~~~-~~ 129 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI-------SALQNLTNLRELYLNEDNISD-ISP-LA 129 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-------GGGTTCTTCSEEECTTSCCCC-CGG-GT
T ss_pred hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc-------hHHcCCCcCCEEECcCCcccC-chh-hc
Confidence 48889999999999999986544 89999999999999999886 458899999999999999984 444 77
Q ss_pred hcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccce
Q 042802 88 NLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAE 167 (424)
Q Consensus 88 ~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 167 (424)
.+ ++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.
T Consensus 130 ~l-~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 203 (347)
T 4fmz_A 130 NL-TKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHY 203 (347)
T ss_dssp TC-TTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred cC-CceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccce
Confidence 77 499999999997655544 48899999999999999885433 8899999999999999875433 888999999
Q ss_pred EeccCCcCccCCCccCCCCCCCCEEEccCCCCCC---------ceeeeccCCcccccccccccccCcccEEECccCcccc
Q 042802 168 FVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD---------ILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSG 238 (424)
Q Consensus 168 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~---------i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 238 (424)
+++++|.+.+..+ +..+++|+.|++++|.++. ++.+++++|.+.+. ..+..+++|++|++++|.+++
T Consensus 204 L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred eecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC
Confidence 9999998886554 7889999999999998765 37889999988874 468889999999999999985
Q ss_pred cCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCc
Q 042802 239 DIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLE 309 (424)
Q Consensus 239 ~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 309 (424)
. ..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 280 ~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 280 I--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred C--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 4 458899999999999999999999999999999999999999997766 888999999999999885
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=4.6e-31 Score=246.71 Aligned_cols=266 Identities=18% Similarity=0.215 Sum_probs=231.1
Q ss_pred CCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCccc
Q 042802 38 NHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNL 117 (424)
Q Consensus 38 ~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L 117 (424)
+++.++++++.++.+|. .+ .++|+.|++++|.+++..+..+..++ +|++|++++|.+.+..|..+.++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~------~~--~~~l~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPK------EI--SPDTTLLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp ETTEEECCSSCCSSCCS------CC--CTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred cCCEEECCCCCccccCC------CC--CCCCeEEECCCCcCCccCHhHhhCCC-CCcEEECCCCccCccCHhHhhCcCCC
Confidence 69999999999998873 33 36899999999999977788899884 99999999999998889999999999
Q ss_pred ceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCc--cCCCccCCCCCCCCEEEcc
Q 042802 118 LALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPS--GSIPSCLSNLTSLRSLYLG 195 (424)
Q Consensus 118 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~ 195 (424)
++|++++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..+..+..+ +|+.|+++
T Consensus 105 ~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 105 QKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 99999999999 6666654 89999999999999777778999999999999999996 3677778887 99999999
Q ss_pred CCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCC
Q 042802 196 SNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLE 275 (424)
Q Consensus 196 ~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~ 275 (424)
+|.+++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+
T Consensus 181 ~n~l~~--------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 244 (332)
T 2ft3_A 181 EAKLTG--------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244 (332)
T ss_dssp SSBCSS--------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCC
T ss_pred CCCCCc--------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCC
Confidence 998876 343333 7899999999999988888999999999999999999988888899999999
Q ss_pred EEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCCC-------CcccccccccccCCcCCc
Q 042802 276 VLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSG-------GIFTSFIAESFMGNELLC 333 (424)
Q Consensus 276 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-------~~~~~l~~~~~~~n~~lc 333 (424)
+|++++|.++ .+|..+..+++|++|++++|++++..+.. ..+..+..+++.||+..+
T Consensus 245 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp EEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred EEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 9999999998 78888999999999999999998644322 114567788999999764
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.98 E-value=7.9e-31 Score=256.48 Aligned_cols=293 Identities=29% Similarity=0.364 Sum_probs=223.0
Q ss_pred cCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcc
Q 042802 11 NASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLS 90 (424)
Q Consensus 11 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 90 (424)
.+++++.|+++++.++. +| .+..+++|++|++++|.+++.+ . +.++++|++|++++|.+.+..+ +..+
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~------~-~~~l~~L~~L~l~~n~l~~~~~--~~~l- 111 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDIT------P-LKNLTKLVDILMNNNQIADITP--LANL- 111 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG------G-GTTCTTCCEEECCSSCCCCCGG--GTTC-
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCch------h-hhccccCCEEECCCCccccChh--hcCC-
Confidence 46789999999999984 45 3888999999999999999875 3 8899999999999999985444 7888
Q ss_pred cccceeEeecCcCcccchhhhcCCcccceeecccCccccccCc--------------------ccCCCCCCCeEEccCCc
Q 042802 91 MSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPI--------------------TFGRLQKLQGLDLAFNK 150 (424)
Q Consensus 91 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~--------------------~~~~l~~L~~L~L~~n~ 150 (424)
++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++. .+..+++|+.|++++|.
T Consensus 112 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 188 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc
Confidence 499999999999976543 8999999999999999874 221 24556667777777777
Q ss_pred ccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCC---------ceeeeccCCccccccccccc
Q 042802 151 LVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD---------ILFFDFSSNFLVGPLSLDIG 221 (424)
Q Consensus 151 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~---------i~~l~l~~n~~~~~~~~~l~ 221 (424)
+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++ ++.+++++|.+.+..+ +.
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hh
Confidence 6532 346677777777777777765544 5667778888887776654 3677777777776544 67
Q ss_pred ccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEE
Q 042802 222 NLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLREL 301 (424)
Q Consensus 222 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 301 (424)
.+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..| +..+++|+.|
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 77788888888887775433 6777888888888888876544 6777888888888888876654 6677888888
Q ss_pred EcccccCcccCCCCCcccccccccccCCcC
Q 042802 302 NLSFNKLEGEIPSGGIFTSFIAESFMGNEL 331 (424)
Q Consensus 302 ~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~ 331 (424)
++++|++++. +....+++++.+++.+|..
T Consensus 337 ~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 337 FFYNNKVSDV-SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp ECCSSCCCCC-GGGTTCTTCCEEECCSSCC
T ss_pred ECCCCccCCc-hhhccCCCCCEEeCCCCcc
Confidence 8888888754 4445667777788877764
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=5.9e-30 Score=248.78 Aligned_cols=274 Identities=20% Similarity=0.187 Sum_probs=228.5
Q ss_pred CchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCCh
Q 042802 5 IPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPS 84 (424)
Q Consensus 5 lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 84 (424)
+| +++.+++|++|++++|.+++. | ++.+++|++|++++|.+++.+ ++++++|++|++++|.+++ ++
T Consensus 57 ~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~--------~~~l~~L~~L~L~~N~l~~-l~- 122 (457)
T 3bz5_A 57 MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD--------VTPLTKLTYLNCDTNKLTK-LD- 122 (457)
T ss_dssp CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC--------CTTCTTCCEEECCSSCCSC-CC-
T ss_pred Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee--------cCCCCcCCEEECCCCcCCe-ec-
Confidence 45 689999999999999999975 3 889999999999999998863 7889999999999999986 44
Q ss_pred hHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcc
Q 042802 85 SIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLAR 164 (424)
Q Consensus 85 ~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 164 (424)
++.+ ++|++|++++|.+.+. .++.+++|++|++++|...+.+ .+..+++|++|++++|++.+ +| +..+++
T Consensus 123 -~~~l-~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~ 192 (457)
T 3bz5_A 123 -VSQN-PLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKL 192 (457)
T ss_dssp -CTTC-TTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTT
T ss_pred -CCCC-CcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCC
Confidence 6777 4999999999999774 3788999999999999655455 47889999999999999986 44 788899
Q ss_pred cceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCC--------ceeeeccCCcccccccccccccC-------cccEE
Q 042802 165 LAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD--------ILFFDFSSNFLVGPLSLDIGNLK-------VLVRI 229 (424)
Q Consensus 165 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--------i~~l~l~~n~~~~~~~~~l~~l~-------~L~~L 229 (424)
|+.|++++|.+++. .+..+++|+.|++++|++++ ++.+++++|.+.+..+..+.++. +|+.|
T Consensus 193 L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L 269 (457)
T 3bz5_A 193 LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEI 269 (457)
T ss_dssp CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCC
T ss_pred CCEEECcCCcCCee---ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEE
Confidence 99999999999875 38889999999999998766 47889999999886554544444 45666
Q ss_pred ECccCcccccCchhhccCcCccEeeccCccccccchh--------hhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEE
Q 042802 230 NLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPE--------LFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLREL 301 (424)
Q Consensus 230 ~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~--------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 301 (424)
++++|.+.+.+| +..+++|+.|++++|...+.+|. .+..+++|++|++++|++++. .+..+++|+.|
T Consensus 270 ~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L 344 (457)
T 3bz5_A 270 DLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSL 344 (457)
T ss_dssp CCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEE
T ss_pred ECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEE
Confidence 677776666666 46789999999999987776664 256678999999999999974 38899999999
Q ss_pred EcccccCcc
Q 042802 302 NLSFNKLEG 310 (424)
Q Consensus 302 ~l~~n~l~~ 310 (424)
++++|++++
T Consensus 345 ~l~~N~l~~ 353 (457)
T 3bz5_A 345 SCVNAHIQD 353 (457)
T ss_dssp ECCSSCCCB
T ss_pred ECCCCCCCC
Confidence 999999986
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=5.7e-31 Score=248.22 Aligned_cols=283 Identities=18% Similarity=0.213 Sum_probs=236.3
Q ss_pred hhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHh
Q 042802 9 ITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGN 88 (424)
Q Consensus 9 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 88 (424)
-..|+.....+.+++.++ .+|..+. ++|++|++++|.+++++. ..+.++++|+.|++++|.+++..+..+..
T Consensus 27 ~~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISN-----SDLQRCVNLQALVLTSNGINTIEEDSFSS 98 (353)
T ss_dssp CCEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CCCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCH-----HHhccCCCCCEEECCCCccCccCHhhcCC
Confidence 345677788999999998 5565554 589999999999998863 57899999999999999999877888988
Q ss_pred cccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCc--ccCCCCCCCeEEccCCc-ccccCChhhcCCccc
Q 042802 89 LSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPI--TFGRLQKLQGLDLAFNK-LVGSFPDELCHLARL 165 (424)
Q Consensus 89 l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L 165 (424)
++ +|++|++++|.+.+..+..+.++++|++|++++|.+++ +|. .+..+++|++|++++|. +....+..+..+++|
T Consensus 99 l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 176 (353)
T 2z80_A 99 LG-SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176 (353)
T ss_dssp CT-TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CC-CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence 84 99999999999987777779999999999999999994 554 78999999999999994 666667789999999
Q ss_pred ceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhc
Q 042802 166 AEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIV 245 (424)
Q Consensus 166 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 245 (424)
++|++++|.+.+..|..+..+++|+.|++++|.++.+ .+..+..+++|++|++++|.+++..+..+.
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 243 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL-------------LEIFVDVTSSVECLELRDTDLDTFHFSELS 243 (353)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH-------------HHHHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred CEEECCCCCcCccCHHHHhccccCCeecCCCCccccc-------------hhhhhhhcccccEEECCCCccccccccccc
Confidence 9999999999998899999999999999999988653 122244578999999999999876554433
Q ss_pred ---cCcCccEeeccCccccc----cchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCC
Q 042802 246 ---GLKDLQFMDLAYNRSEG----PIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPS 314 (424)
Q Consensus 246 ---~l~~L~~L~ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 314 (424)
....++.++++++.+.+ .+|..+..+++|++|++++|+++...+..+..+++|++|++++|++.+..|.
T Consensus 244 ~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp ---CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 35678888888888775 4678899999999999999999944334468999999999999999987763
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.3e-30 Score=240.82 Aligned_cols=275 Identities=21% Similarity=0.209 Sum_probs=158.2
Q ss_pred CEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCcc--CChhHHhccccc
Q 042802 16 TVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGF--LPSSIGNLSMSL 93 (424)
Q Consensus 16 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~~L 93 (424)
+.++.+++.++ .+|..+ .++|++|++++|.++.+|. ..+.++++|+.|++++|.++.. .+..+..+ .+|
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L 80 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPH-----GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSL 80 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCT-----TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC-SCC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCH-----hHhhccccCCEEECCCCccCcccCcccccccc-ccc
Confidence 45666666665 334333 2466666666666665542 3355666666666666665521 24444444 255
Q ss_pred ceeEeecCcCcccchhhhcCCcccceeecccCccccccC-cccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccC
Q 042802 94 KTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIP-ITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILG 172 (424)
Q Consensus 94 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 172 (424)
++|++++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.
T Consensus 81 ~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~---------------------- 137 (306)
T 2z66_A 81 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH---------------------- 137 (306)
T ss_dssp CEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC----------------------
T ss_pred CEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc----------------------
Confidence 55555555553 233445555555555555555553222 234444555555555444
Q ss_pred CcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccE
Q 042802 173 NKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQF 252 (424)
Q Consensus 173 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 252 (424)
+.+..+..+..+++|+.|++++|.+++ ...|..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 138 --l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 138 --TRVAFNGIFNGLSSLEVLKMAGNSFQE------------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp --CEECSTTTTTTCTTCCEEECTTCEEGG------------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred --CCccchhhcccCcCCCEEECCCCcccc------------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence 444444445555555555555554432 013445566666777777777776666667777777777
Q ss_pred eeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCC-CCCEEEcccccCcccCCCC---CcccccccccccC
Q 042802 253 MDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLV-YLRELNLSFNKLEGEIPSG---GIFTSFIAESFMG 328 (424)
Q Consensus 253 L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~---~~~~~l~~~~~~~ 328 (424)
|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|++.+..+.. ..........+..
T Consensus 204 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~ 283 (306)
T 2z66_A 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 283 (306)
T ss_dssp EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCG
T ss_pred EECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccc
Confidence 77777777766666677777888888888888777777777774 7888888888887654321 1122223333444
Q ss_pred CcCCcCCC
Q 042802 329 NELLCGLP 336 (424)
Q Consensus 329 n~~lc~~~ 336 (424)
+...|..|
T Consensus 284 ~~~~C~~p 291 (306)
T 2z66_A 284 ERMECATP 291 (306)
T ss_dssp GGCBEEES
T ss_pred cccccCCc
Confidence 55556544
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.6e-30 Score=238.84 Aligned_cols=267 Identities=21% Similarity=0.233 Sum_probs=188.9
Q ss_pred cCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCC
Q 042802 4 TIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLP 83 (424)
Q Consensus 4 ~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 83 (424)
.+|..+. ++|++|++++|.+++..+..|+++++|++|++++|.++..+. ....+..+++|++|++++|.+. .+|
T Consensus 21 ~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~~~L~~L~Ls~n~i~-~l~ 94 (306)
T 2z66_A 21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC---CSQSDFGTTSLKYLDLSFNGVI-TMS 94 (306)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE---EEHHHHSCSCCCEEECCSCSEE-EEE
T ss_pred cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC---cccccccccccCEEECCCCccc-cCh
Confidence 4566553 689999999999996666678999999999999999886510 0145667899999999999998 577
Q ss_pred hhHHhcccccceeEeecCcCcccch-hhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccc-cCChhhcC
Q 042802 84 SSIGNLSMSLKTLIIANCSIIGNIR-RAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVG-SFPDELCH 161 (424)
Q Consensus 84 ~~~~~l~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~ 161 (424)
..+..+ ++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..
T Consensus 95 ~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 173 (306)
T 2z66_A 95 SNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173 (306)
T ss_dssp EEEETC-TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred hhcCCC-CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh
Confidence 778888 499999999999976655 578999999999999999998888889999999999999998875 45666666
Q ss_pred CcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCc
Q 042802 162 LARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIP 241 (424)
Q Consensus 162 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 241 (424)
+++|+.|++++|.+.+..|..+..+++|+.|++++|. +++..+
T Consensus 174 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-------------------------------------l~~~~~ 216 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-------------------------------------FFSLDT 216 (306)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-------------------------------------CSBCCS
T ss_pred CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-------------------------------------cCccCh
Confidence 6677777776666665555555555555555555554 443333
Q ss_pred hhhccCcCccEeeccCccccccchhhhcCCC-CCCEEECcCCCCCCCCc--ccccCCCCCCEEEcccccCcccCCC
Q 042802 242 ATIVGLKDLQFMDLAYNRSEGPIPELFGDLT-SLEVLNLSKNKISGPIP--TSMEKLVYLRELNLSFNKLEGEIPS 314 (424)
Q Consensus 242 ~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~l~~n~l~~~~p~ 314 (424)
..+..+++|+.|++++|++++..|..+..++ +|++|++++|++.+..+ ....-+...+.+.+..+.+.+..|.
T Consensus 217 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 4455556666666666666655555566553 66777777776664321 0111112233344455556555553
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=3.3e-30 Score=250.29 Aligned_cols=227 Identities=25% Similarity=0.267 Sum_probs=166.5
Q ss_pred ecCchhhhcCCCCCEEeccCCcccccCccccCCCCCC-------------CEEEccCCccCCCCCcccccccccCCccCc
Q 042802 3 GTIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNH-------------EWLNLANNSLTSSTSKLSFLSSLANCKKLR 69 (424)
Q Consensus 3 g~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L-------------~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~ 69 (424)
|++|++++++++|++|++++|.+.+..|..++++++| ++|++++|.++++|. + .++|+
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~-------~--~~~L~ 94 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE-------L--PPHLE 94 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS-------C--CTTCS
T ss_pred hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC-------C--cCCCC
Confidence 7899999999999999999999999999999888764 999999999988863 1 36889
Q ss_pred eeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCC
Q 042802 70 NINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFN 149 (424)
Q Consensus 70 ~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 149 (424)
.|++++|.+++ +|.. . .+|++|++++|.+.+. +.. .++|++|++++|.+++ +| .++.+++|++|++++|
T Consensus 95 ~L~l~~n~l~~-lp~~---~-~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 95 SLVASCNSLTE-LPEL---P-QSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp EEECCSSCCSS-CCCC---C-TTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred EEEccCCcCCc-cccc---c-CCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC
Confidence 99999998885 6643 2 4788999988888642 221 2688999999998885 66 5888899999999998
Q ss_pred cccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCC-------ceeeeccCCcccccccccccc
Q 042802 150 KLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD-------ILFFDFSSNFLVGPLSLDIGN 222 (424)
Q Consensus 150 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-------i~~l~l~~n~~~~~~~~~l~~ 222 (424)
++.+ +|.. ..+|++|++++|.+.+ +| .+..+++|+.|++++|.+++ ++.+++++|.+. .+| .+..
T Consensus 164 ~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp-~~~~ 235 (454)
T 1jl5_A 164 SLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELP-ELQN 235 (454)
T ss_dssp CCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCC-CCTT
T ss_pred cCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-ccc-ccCC
Confidence 8874 5543 3588889999888886 45 58888899999998888765 478888888877 466 4788
Q ss_pred cCcccEEECccCcccccCchhhccCcCccEeeccCcccc
Q 042802 223 LKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSE 261 (424)
Q Consensus 223 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 261 (424)
+++|++|++++|.+++ +|.. +++|+.|++++|+++
T Consensus 236 l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 236 LPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp CTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred CCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc
Confidence 8888888888888874 3332 245555555555554
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=3.1e-29 Score=244.19 Aligned_cols=252 Identities=23% Similarity=0.220 Sum_probs=218.6
Q ss_pred CCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCccc
Q 042802 38 NHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNL 117 (424)
Q Consensus 38 ~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L 117 (424)
..+.++.++..++.+|. .+. ++++.|++++|.+++..+..+..++ +|++|++++|.+.+..+..|.++++|
T Consensus 55 ~~~~v~c~~~~l~~iP~------~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L 125 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQ------GIP--SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASL 125 (452)
T ss_dssp SSCEEECCSSCCSSCCS------CCC--TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCcEEEECCCCcCccCC------CCC--CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccC
Confidence 45788888888888873 332 6889999999999988888888884 99999999999988888899999999
Q ss_pred ceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCC-cCccCCCccCCCCCCCCEEEccC
Q 042802 118 LALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGN-KPSGSIPSCLSNLTSLRSLYLGS 196 (424)
Q Consensus 118 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~ 196 (424)
++|++++|.+++..+..+..+++|++|++++|.+....+..|..+++|+.|++++| .+....+..+..+++|+.|++++
T Consensus 126 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp CEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 99999999999766677899999999999999998777778899999999999985 44444455788999999999999
Q ss_pred CCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCE
Q 042802 197 NSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEV 276 (424)
Q Consensus 197 n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 276 (424)
|.++++ | .+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.
T Consensus 206 n~l~~~--------------~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 270 (452)
T 3zyi_A 206 CNIKDM--------------P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270 (452)
T ss_dssp SCCSSC--------------C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred Cccccc--------------c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCE
Confidence 988763 2 4677899999999999999888999999999999999999999888889999999999
Q ss_pred EECcCCCCCCCCcccccCCCCCCEEEcccccCcccCC
Q 042802 277 LNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIP 313 (424)
Q Consensus 277 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 313 (424)
|+|++|++++..+..+..+++|+.|++++|++.+...
T Consensus 271 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp EECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred EECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 9999999998777888899999999999999986654
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=6.5e-30 Score=238.04 Aligned_cols=234 Identities=19% Similarity=0.200 Sum_probs=154.3
Q ss_pred CCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcc
Q 042802 37 RNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSN 116 (424)
Q Consensus 37 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~ 116 (424)
++++.|++++|.++.+| ..+.++++|++|++++|.++ .+|..++.++ +|++|++++|.+. .+|..+..+++
T Consensus 81 ~~l~~L~L~~n~l~~lp------~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~-~L~~L~Ls~n~l~-~lp~~l~~l~~ 151 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFP------DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA-GLETLTLARNPLR-ALPASIASLNR 151 (328)
T ss_dssp TTCCEEEEESSCCSSCC------SCGGGGTTCSEEEEESSCCC-CCCSCGGGGT-TCSEEEEESCCCC-CCCGGGGGCTT
T ss_pred cceeEEEccCCCchhcC------hhhhhCCCCCEEECCCCCcc-chhHHHhccC-CCCEEECCCCccc-cCcHHHhcCcC
Confidence 45555555555555544 33444555555555555555 4555555552 5555555555554 44555555555
Q ss_pred cceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccC
Q 042802 117 LLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGS 196 (424)
Q Consensus 117 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 196 (424)
|++|++++|++.+.+|..+... ..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~ 215 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRN 215 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEES
T ss_pred CCEEECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccC
Confidence 5555555554444444433320 00111334667777777777766 5666677777777777777
Q ss_pred CCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCE
Q 042802 197 NSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEV 276 (424)
Q Consensus 197 n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 276 (424)
|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 216 N~l~~--------------l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 216 SPLSA--------------LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp SCCCC--------------CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred CCCCc--------------CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence 77665 4556777788888888888888788888888888888888888888888888888888888
Q ss_pred EECcCCCCCCCCcccccCCCCCCEEEcccccCc
Q 042802 277 LNLSKNKISGPIPTSMEKLVYLRELNLSFNKLE 309 (424)
Q Consensus 277 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 309 (424)
|+|++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 282 L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 282 LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp EECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred EeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 888888888888888888888888888766554
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=4e-29 Score=242.56 Aligned_cols=252 Identities=23% Similarity=0.204 Sum_probs=217.2
Q ss_pred CCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCccc
Q 042802 38 NHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNL 117 (424)
Q Consensus 38 ~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L 117 (424)
..+.++.++..++.+|. .+. ++++.|++++|.++...+..+..+ .+|++|++++|.+.+..+..|.++++|
T Consensus 44 ~~~~v~c~~~~l~~iP~------~~~--~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L 114 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPD------GIS--TNTRLLNLHENQIQIIKVNSFKHL-RHLEILQLSRNHIRTIEIGAFNGLANL 114 (440)
T ss_dssp TSCEEECCSCCCSSCCS------CCC--TTCSEEECCSCCCCEECTTTTSSC-SSCCEEECCSSCCCEECGGGGTTCSSC
T ss_pred CCCEEEeCCCCcCcCCC------CCC--CCCcEEEccCCcCCeeCHHHhhCC-CCCCEEECCCCcCCccChhhccCCccC
Confidence 46788888888888873 332 688999999999997777888888 489999999999988888889999999
Q ss_pred ceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCc-CccCCCccCCCCCCCCEEEccC
Q 042802 118 LALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNK-PSGSIPSCLSNLTSLRSLYLGS 196 (424)
Q Consensus 118 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~ 196 (424)
++|++++|.++...+..|..+++|++|++++|.+....+..|..+++|+.|++++|. +....+..+..+++|+.|++++
T Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 999999999996666678999999999999999987777788999999999999854 4444455788999999999999
Q ss_pred CCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCE
Q 042802 197 NSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEV 276 (424)
Q Consensus 197 n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 276 (424)
|.++.+ | .+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.
T Consensus 195 n~l~~~--------------~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 259 (440)
T 3zyj_A 195 CNLREI--------------P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259 (440)
T ss_dssp SCCSSC--------------C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred CcCccc--------------c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence 988763 3 3677899999999999999888999999999999999999999888888999999999
Q ss_pred EECcCCCCCCCCcccccCCCCCCEEEcccccCcccCC
Q 042802 277 LNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIP 313 (424)
Q Consensus 277 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 313 (424)
|+|++|++++..+..+..+++|+.|++++|++.+...
T Consensus 260 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp EECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred EECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 9999999998777888899999999999999976553
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=7.7e-30 Score=233.16 Aligned_cols=251 Identities=23% Similarity=0.192 Sum_probs=123.3
Q ss_pred CEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccce
Q 042802 40 EWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLA 119 (424)
Q Consensus 40 ~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 119 (424)
++++.+++.++.+|. .+ .++|+.|++++|.+++..+..+..++ +|++|++++|.+.+..+..+..+++|++
T Consensus 14 ~~~~c~~~~l~~ip~------~~--~~~l~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 84 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV------GI--PAASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQ 84 (285)
T ss_dssp CEEECCSSCCSSCCT------TC--CTTCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred eEEEcCcCCcccCCc------CC--CCCceEEEeeCCcCCccCHHHcccCC-CCCEEECCCCccceeCHhhcCCccCCCE
Confidence 445555555555541 11 23455555555555543334444442 4555555555554444444555555555
Q ss_pred eecccCc-cccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCC
Q 042802 120 LTLEGNK-LTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNS 198 (424)
Q Consensus 120 L~l~~n~-l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 198 (424)
|++++|. +....|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------------- 148 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT---------------- 148 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----------------
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH----------------
Confidence 5555554 44333444444555555555555444443444444444444444444444333333
Q ss_pred CCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEE
Q 042802 199 LKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLN 278 (424)
Q Consensus 199 l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 278 (424)
+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|+
T Consensus 149 ---------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 207 (285)
T 1ozn_A 149 ---------------------FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207 (285)
T ss_dssp ---------------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ---------------------hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEee
Confidence 44455555555555555544444455555555555555555555555555555566666
Q ss_pred CcCCCCCCCCcccccCCCCCCEEEcccccCcccCCCCCcccccccccccCCcCCcCCC
Q 042802 279 LSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGNELLCGLP 336 (424)
Q Consensus 279 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 336 (424)
+++|.+++..+..+..+++|+.|++++|++.+..+....+..+.......+...|..|
T Consensus 208 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp CCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEES
T ss_pred CCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCc
Confidence 6666555544445555556666666666555444332222223333334444444433
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=3.1e-29 Score=233.45 Aligned_cols=225 Identities=22% Similarity=0.341 Sum_probs=160.5
Q ss_pred CCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhccc
Q 042802 12 ASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSM 91 (424)
Q Consensus 12 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 91 (424)
.++++.|++++|.++ .+|..+.++++|++|++++|.++.+| ..++++++|++|++++|.++ .+|..++.++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp------~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~- 150 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELP------DTMQQFAGLETLTLARNPLR-ALPASIASLN- 150 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCC------SCGGGGTTCSEEEEESCCCC-CCCGGGGGCT-
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchh------HHHhccCCCCEEECCCCccc-cCcHHHhcCc-
Confidence 489999999999999 67888889999999999999999877 67899999999999999999 8899999995
Q ss_pred ccceeEeecCcCcccchhhhcC---------CcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCC
Q 042802 92 SLKTLIIANCSIIGNIRRAIGN---------LSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHL 162 (424)
Q Consensus 92 ~L~~L~l~~n~l~~~~~~~l~~---------l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 162 (424)
+|++|++++|.+.+.+|..+.. +++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..+..+
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l 228 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHL 228 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGC
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccC
Confidence 9999999999988888877654 666667777666666 56666666666666666666666 344456666
Q ss_pred cccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCch
Q 042802 163 ARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPA 242 (424)
Q Consensus 163 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 242 (424)
++|+.|++++|.+.+.+|..+..+++|+.|++++ |.+.+.+|.
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~-------------------------------------n~~~~~~p~ 271 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD-------------------------------------CSNLLTLPL 271 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT-------------------------------------CTTCCBCCT
T ss_pred CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC-------------------------------------CCchhhcch
Confidence 6666666666655555555555555555555544 444444454
Q ss_pred hhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCC
Q 042802 243 TIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKI 284 (424)
Q Consensus 243 ~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 284 (424)
.+..+++|+.|++++|.+.+.+|..++.+++|+.+++..+.+
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 555555555555555555555555555555555555554433
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=2.3e-29 Score=230.02 Aligned_cols=254 Identities=21% Similarity=0.208 Sum_probs=189.9
Q ss_pred CCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccc
Q 042802 15 LTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLK 94 (424)
Q Consensus 15 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~ 94 (424)
-++++.+++.++ .+|..+ .++|++|++++|.+++++. ..+..+++|+.|++++|.+++..|..+..++ +|+
T Consensus 13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~-----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~ 83 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPA-----ASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLE 83 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCC
T ss_pred CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCH-----HHcccCCCCCEEECCCCccceeCHhhcCCcc-CCC
Confidence 368999999988 456443 5799999999999998853 5689999999999999999988788999884 999
Q ss_pred eeEeecCc-CcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCC
Q 042802 95 TLIIANCS-IIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGN 173 (424)
Q Consensus 95 ~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 173 (424)
+|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|++|++++|++.+..+..+..+++|+.|++++|
T Consensus 84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence 99999997 77666889999999999999999999887888999999999999999999777777888999999999888
Q ss_pred cCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEe
Q 042802 174 KPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFM 253 (424)
Q Consensus 174 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 253 (424)
.+.+..+..+..+++|+.|++++|. +++..|..+..+++|+.|
T Consensus 164 ~l~~~~~~~~~~l~~L~~L~l~~n~-------------------------------------l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 164 RISSVPERAFRGLHSLDRLLLHQNR-------------------------------------VAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC-------------------------------------CCEECTTTTTTCTTCCEE
T ss_pred cccccCHHHhcCccccCEEECCCCc-------------------------------------ccccCHhHccCcccccEe
Confidence 8876555555555555555555554 444445555555666666
Q ss_pred eccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCCC
Q 042802 254 DLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSG 315 (424)
Q Consensus 254 ~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 315 (424)
++++|.+++..+..+..+++|++|++++|++....+.. .....++.+..+.+.+.+..|..
T Consensus 207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred eCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 66666666555555666666666666666665433211 01122333445566666666643
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.3e-30 Score=241.56 Aligned_cols=268 Identities=18% Similarity=0.210 Sum_probs=221.2
Q ss_pred cCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCC
Q 042802 4 TIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLP 83 (424)
Q Consensus 4 ~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 83 (424)
.+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++.+. ..+.++++|++|++++|.+++..+
T Consensus 45 ~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~ 117 (353)
T 2z80_A 45 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE-----DSFSSLGSLEHLDLSYNYLSNLSS 117 (353)
T ss_dssp SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCSSCCH
T ss_pred ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH-----hhcCCCCCCCEEECCCCcCCcCCH
Confidence 5677665 589999999999998777789999999999999999998742 678999999999999999995444
Q ss_pred hhHHhcccccceeEeecCcCcccch-hhhcCCcccceeecccC-ccccccCcccCCCCCCCeEEccCCcccccCChhhcC
Q 042802 84 SSIGNLSMSLKTLIIANCSIIGNIR-RAIGNLSNLLALTLEGN-KLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCH 161 (424)
Q Consensus 84 ~~~~~l~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 161 (424)
..+..+ ++|++|++++|.+.+..+ ..+..+++|++|++++| .+....+..+..+++|++|++++|.+.+..|..+..
T Consensus 118 ~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 196 (353)
T 2z80_A 118 SWFKPL-SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196 (353)
T ss_dssp HHHTTC-TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred hHhCCC-ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence 458888 499999999999975444 47899999999999999 577666788999999999999999999888999999
Q ss_pred CcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccc---
Q 042802 162 LARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSG--- 238 (424)
Q Consensus 162 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--- 238 (424)
+++|++|++++|.+....+..+..+++|+.|++++|.++++..-.++ .....+.++.++++++.+++
T Consensus 197 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~----------~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS----------TGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------------CCCCCCEEEEESCBCCHHHH
T ss_pred cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc----------cccccchhhccccccccccCcch
Confidence 99999999999998754444455689999999999998874211111 12234667788888887765
Q ss_pred -cCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCc
Q 042802 239 -DIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIP 289 (424)
Q Consensus 239 -~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 289 (424)
.+|.++..+++|+.|++++|+++...+..|..+++|++|++++|++.+..|
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 467888999999999999999995444446899999999999999997654
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.3e-28 Score=239.07 Aligned_cols=277 Identities=25% Similarity=0.307 Sum_probs=137.7
Q ss_pred CCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccc
Q 042802 13 SKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMS 92 (424)
Q Consensus 13 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~ 92 (424)
++|++|++++|.+++ +|.. +++|++|++++|.+++++. + .++|++|++++|.+++ +| .++.+ .+
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~-------~--~~~L~~L~L~~n~l~~-lp-~~~~l-~~ 154 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD-------L--PPLLEYLGVSNNQLEK-LP-ELQNS-SF 154 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS-------C--CTTCCEEECCSSCCSS-CC-CCTTC-TT
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC-------C--CCCCCEEECcCCCCCC-Cc-ccCCC-CC
Confidence 567777777777775 4432 3556666666666655431 0 1345555555555553 44 34444 25
Q ss_pred cceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccc-------------------
Q 042802 93 LKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVG------------------- 153 (424)
Q Consensus 93 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~------------------- 153 (424)
|++|++++|.+.+ +|.. .++|++|++++|.+++ +| .++.+++|++|++++|++.+
T Consensus 155 L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 155 LKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE 228 (454)
T ss_dssp CCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS
T ss_pred CCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC
Confidence 5555555555443 2221 1345555555555543 33 34455555555555554442
Q ss_pred cCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCC-------ceeeeccCCcccccccccccccCcc
Q 042802 154 SFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD-------ILFFDFSSNFLVGPLSLDIGNLKVL 226 (424)
Q Consensus 154 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-------i~~l~l~~n~~~~~~~~~l~~l~~L 226 (424)
.+| .+..+++|++|++++|.+.+ +|+. .++|+.|++++|.+++ ++.+++++|.+.+. |. -.++|
T Consensus 229 ~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l-~~---~~~~L 299 (454)
T 1jl5_A 229 ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL-SE---LPPNL 299 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEE-SC---CCTTC
T ss_pred ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccccCcccCcCCEEECcCCccCcc-cC---cCCcC
Confidence 233 24444444444444444442 2211 2344444444444433 24444444444431 10 01345
Q ss_pred cEEECccCcccccCchhhccC-cCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEccc
Q 042802 227 VRINLSKNNLSGDIPATIVGL-KDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSF 305 (424)
Q Consensus 227 ~~L~l~~n~l~~~~p~~~~~l-~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 305 (424)
++|++++|.+++ ++ .+ ++|++|++++|++++ +|.. +++|++|++++|.++ .+|. .+++|++|++++
T Consensus 300 ~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~ 366 (454)
T 1jl5_A 300 YYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEY 366 (454)
T ss_dssp CEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred CEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCC
Confidence 555555555442 11 22 478888888888875 4543 578888888888888 4555 467888888888
Q ss_pred ccCcc--cCCCC-Ccc-------------cccccccccCCcCCc
Q 042802 306 NKLEG--EIPSG-GIF-------------TSFIAESFMGNELLC 333 (424)
Q Consensus 306 n~l~~--~~p~~-~~~-------------~~l~~~~~~~n~~lc 333 (424)
|++++ .+|.. ... .+++.+++.+|+...
T Consensus 367 N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 367 NPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp SCCSSCCCCCTTCCEEECCC------------------------
T ss_pred CCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 88887 55543 222 567777888877543
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1e-28 Score=240.50 Aligned_cols=251 Identities=22% Similarity=0.190 Sum_probs=221.4
Q ss_pred cCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEc
Q 042802 67 KLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDL 146 (424)
Q Consensus 67 ~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 146 (424)
....++.++..++ .+|..+ +.++++|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|+|
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 3567888888887 677654 358999999999999988999999999999999999999888899999999999999
Q ss_pred cCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCC-CCCceeeeccCCcccccccccccccCc
Q 042802 147 AFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNS-LKDILFFDFSSNFLVGPLSLDIGNLKV 225 (424)
Q Consensus 147 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~i~~l~l~~n~~~~~~~~~l~~l~~ 225 (424)
++|++....+..|..+++|++|++++|.+....+..+..+++|+.|++++|. +..+ .+..+.++++
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i-------------~~~~~~~l~~ 197 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI-------------SEGAFEGLFN 197 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-------------CTTTTTTCTT
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc-------------ChhhccCCCC
Confidence 9999997777789999999999999999998888889999999999999854 3321 2345788999
Q ss_pred ccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEccc
Q 042802 226 LVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSF 305 (424)
Q Consensus 226 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 305 (424)
|++|++++|.+++ +| .+..+++|+.|++++|.+++..|..|..+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 198 L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 198 LKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275 (452)
T ss_dssp CCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC
Confidence 9999999999984 44 478899999999999999998899999999999999999999988889999999999999999
Q ss_pred ccCcccCCCC-CcccccccccccCCcCCcCCC
Q 042802 306 NKLEGEIPSG-GIFTSFIAESFMGNELLCGLP 336 (424)
Q Consensus 306 n~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 336 (424)
|++++..+.. ..++++..+++.+||+.|++.
T Consensus 276 N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 276 NNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp SCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 9998655443 457889999999999999865
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=9.9e-29 Score=239.80 Aligned_cols=252 Identities=22% Similarity=0.196 Sum_probs=221.9
Q ss_pred cCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEc
Q 042802 67 KLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDL 146 (424)
Q Consensus 67 ~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 146 (424)
..+.++..+..++ .+|..+. .++++|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|+|
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4567888888888 7787653 58999999999999888899999999999999999999887889999999999999
Q ss_pred cCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcc
Q 042802 147 AFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVL 226 (424)
Q Consensus 147 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L 226 (424)
++|++....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.... ...+..+.++++|
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~------------~i~~~~~~~l~~L 187 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS------------YISEGAFEGLSNL 187 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC------------EECTTTTTTCSSC
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc------------eeCcchhhccccc
Confidence 9999997777789999999999999999998888899999999999999854322 1133468889999
Q ss_pred cEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccc
Q 042802 227 VRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFN 306 (424)
Q Consensus 227 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 306 (424)
++|++++|.++ .+| .+..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 188 ~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 188 RYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp CEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred CeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 99999999998 555 4788999999999999999888999999999999999999999888899999999999999999
Q ss_pred cCcccCCCC-CcccccccccccCCcCCcCCC
Q 042802 307 KLEGEIPSG-GIFTSFIAESFMGNELLCGLP 336 (424)
Q Consensus 307 ~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 336 (424)
++++..+.. ..++++..+++.+||+.|++.
T Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 266 NLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 999655543 557889999999999999864
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3.2e-30 Score=252.00 Aligned_cols=317 Identities=17% Similarity=0.141 Sum_probs=166.6
Q ss_pred hhcCCCCCEEeccCCccccc----CccccCCCCCCCEEEccCCccCCCCCcccccccccCCc----cCceeeccCccCCc
Q 042802 9 ITNASKLTVLELGGNTFSGF----IPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCK----KLRNINLIGNPLDG 80 (424)
Q Consensus 9 ~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~----~L~~L~l~~n~~~~ 80 (424)
+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++... . .....++ +|++|++++|.++.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~-~---~l~~~l~~~~~~L~~L~L~~n~i~~ 99 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV-H---CVLQGLQTPSCKIQKLSLQNCCLTG 99 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH-H---HHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH-H---HHHHHHhhCCCceeEEEccCCCCCH
Confidence 44556666666666665532 34445555666666666665544200 0 0111122 46666666665552
Q ss_pred ----cCChhHHhcccccceeEeecCcCcccchhhhc-----CCcccceeecccCccccc----cCcccCCCCCCCeEEcc
Q 042802 81 ----FLPSSIGNLSMSLKTLIIANCSIIGNIRRAIG-----NLSNLLALTLEGNKLTGP----IPITFGRLQKLQGLDLA 147 (424)
Q Consensus 81 ----~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~ 147 (424)
.++..+..++ +|++|++++|.+....+..+. ..++|++|++++|.+++. ++..+..+++|++|+++
T Consensus 100 ~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 100 AGCGVLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp GGHHHHHHHTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHccCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECc
Confidence 2344445542 566666666655433333222 134566666666655532 23334445566666666
Q ss_pred CCcccccCChhhc-----CCcccceEeccCCcCccC----CCccCCCCCCCCEEEccCCCC----------------CCc
Q 042802 148 FNKLVGSFPDELC-----HLARLAEFVILGNKPSGS----IPSCLSNLTSLRSLYLGSNSL----------------KDI 202 (424)
Q Consensus 148 ~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l----------------~~i 202 (424)
+|.+....+..+. ..++|+.|++++|.+... ++..+..+++|+.|++++|.+ ..+
T Consensus 179 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L 258 (461)
T 1z7x_W 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258 (461)
T ss_dssp SSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred CCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence 6555433222222 234555666665555532 234444555566666655542 223
Q ss_pred eeeeccCCccccc----ccccccccCcccEEECccCcccccCchhhcc-----CcCccEeeccCcccccc----chhhhc
Q 042802 203 LFFDFSSNFLVGP----LSLDIGNLKVLVRINLSKNNLSGDIPATIVG-----LKDLQFMDLAYNRSEGP----IPELFG 269 (424)
Q Consensus 203 ~~l~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~L~ls~n~l~~~----~~~~l~ 269 (424)
+.+++++|.+.+. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++. ++..+.
T Consensus 259 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 338 (461)
T 1z7x_W 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh
Confidence 5555555555543 4455556677777777777766444433332 25677777777776654 345555
Q ss_pred CCCCCCEEECcCCCCCCCCcccccC-----CCCCCEEEcccccCcc----cCCCC-CcccccccccccCCc
Q 042802 270 DLTSLEVLNLSKNKISGPIPTSMEK-----LVYLRELNLSFNKLEG----EIPSG-GIFTSFIAESFMGNE 330 (424)
Q Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~----~~p~~-~~~~~l~~~~~~~n~ 330 (424)
.+++|++|++++|.+.+..+..+.. .++|++|++++|++++ .+|.. ...++++.+++.+|+
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 6677777777777666543333322 5567777777776664 33322 334566666666665
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=4.3e-30 Score=237.83 Aligned_cols=250 Identities=20% Similarity=0.169 Sum_probs=176.5
Q ss_pred cccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCc-ccchhhhc-------CCcccceeecccCccccccC
Q 042802 61 SLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSII-GNIRRAIG-------NLSNLLALTLEGNKLTGPIP 132 (424)
Q Consensus 61 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~-~~~~~~l~-------~l~~L~~L~l~~n~l~~~~p 132 (424)
.++..++|+.|++++|.+ .+|..+.. .|++|++++|.+. ..+|..+. ++++|++|++++|.+++..|
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 345566778888888877 66776654 3777788877773 34555444 67788888888888887777
Q ss_pred ccc--CCCCCCCeEEccCCcccccCChhhcCC-----cccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceee
Q 042802 133 ITF--GRLQKLQGLDLAFNKLVGSFPDELCHL-----ARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFF 205 (424)
Q Consensus 133 ~~~--~~l~~L~~L~L~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l 205 (424)
..+ ..+++|++|++++|++.+. |..+..+ ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-- 189 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER-- 189 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH--
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch--
Confidence 765 7788888888888888765 6666665 78888888888888777777888888888888887754310
Q ss_pred eccCCcccccccccc--cccCcccEEECccCcccc---cCchhhccCcCccEeeccCccccccch-hhhcCCCCCCEEEC
Q 042802 206 DFSSNFLVGPLSLDI--GNLKVLVRINLSKNNLSG---DIPATIVGLKDLQFMDLAYNRSEGPIP-ELFGDLTSLEVLNL 279 (424)
Q Consensus 206 ~l~~n~~~~~~~~~l--~~l~~L~~L~l~~n~l~~---~~p~~~~~l~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~L 279 (424)
..+..+ ..+++|++|++++|.+++ .....+..+++|++|++++|++++..| ..+..+++|++|++
T Consensus 190 ---------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 190 ---------GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp ---------HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred ---------HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence 012222 667788888888887772 222334567788888888888876654 44556778888888
Q ss_pred cCCCCCCCCcccccCCCCCCEEEcccccCcccCCCCCcccccccccccCCcC
Q 042802 280 SKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSGGIFTSFIAESFMGNEL 331 (424)
Q Consensus 280 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~ 331 (424)
++|.++ .+|..+. ++|++|++++|++++. |....+++++.+++.+|+.
T Consensus 261 s~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 261 SFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp TTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTT
T ss_pred CCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCC
Confidence 888887 5666554 6788888888888755 5556677777778877764
No 61
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=9.7e-31 Score=255.64 Aligned_cols=296 Identities=18% Similarity=0.175 Sum_probs=137.8
Q ss_pred CCCEEeccCCcccccCccc-cCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhccc-
Q 042802 14 KLTVLELGGNTFSGFIPNT-IGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSM- 91 (424)
Q Consensus 14 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~- 91 (424)
+|++|++++|.++...... +..+++|++|++++|.++... ...+...+..+++|++|++++|.+....+..+.....
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~-~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR-CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHH-HHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHH-HHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4555555555554332222 445555555555555554220 0001133444555555555555554433333332212
Q ss_pred ---ccceeEeecCcCcc----cchhhhcCCcccceeecccCccccccCccc-----CCCCCCCeEEccCCccccc----C
Q 042802 92 ---SLKTLIIANCSIIG----NIRRAIGNLSNLLALTLEGNKLTGPIPITF-----GRLQKLQGLDLAFNKLVGS----F 155 (424)
Q Consensus 92 ---~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~L~~n~~~~~----~ 155 (424)
+|++|++++|.+.. .++..+..+++|++|++++|.++...+..+ ...++|++|++++|++.+. +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 35555555555542 234555555555555555555543222211 1234455555555555432 2
Q ss_pred ChhhcCCcccceEeccCCcCccCCCccCC-----CCCCCCEEEccCCCCCC---------------ceeeeccCCccccc
Q 042802 156 PDELCHLARLAEFVILGNKPSGSIPSCLS-----NLTSLRSLYLGSNSLKD---------------ILFFDFSSNFLVGP 215 (424)
Q Consensus 156 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~---------------i~~l~l~~n~~~~~ 215 (424)
+..+..+++|++|++++|.+....+..+. ..++|+.|++++|.++. ++.+++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 33344455555555555554432222221 13455555555555433 24555555554432
Q ss_pred c-----cccccccCcccEEECccCccccc----CchhhccCcCccEeeccCccccccchhhhcC-----CCCCCEEECcC
Q 042802 216 L-----SLDIGNLKVLVRINLSKNNLSGD----IPATIVGLKDLQFMDLAYNRSEGPIPELFGD-----LTSLEVLNLSK 281 (424)
Q Consensus 216 ~-----~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~-----l~~L~~L~L~~ 281 (424)
. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 1 11122345555555555555532 3444444555555555555554332222221 24555555555
Q ss_pred CCCCCC----CcccccCCCCCCEEEcccccCcc
Q 042802 282 NKISGP----IPTSMEKLVYLRELNLSFNKLEG 310 (424)
Q Consensus 282 n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~ 310 (424)
|.+++. ++..+..+++|++|++++|++.+
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 555543 23344445555555555555543
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=8.8e-30 Score=236.29 Aligned_cols=265 Identities=20% Similarity=0.159 Sum_probs=177.7
Q ss_pred CCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhccccc
Q 042802 14 KLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSL 93 (424)
Q Consensus 14 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L 93 (424)
+++..+++.+.+.......+..+++|++|++++|.+++.+. ..+..+++|+.|++++|.+++..+ +..+ ++|
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l-~~L 82 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA-----ADLAPFTKLELLNLSSNVLYETLD--LESL-STL 82 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCH-----HHHTTCTTCCEEECTTSCCEEEEE--ETTC-TTC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCH-----HHhhCCCcCCEEECCCCcCCcchh--hhhc-CCC
Confidence 35556666666655555555666677777777777776632 456777777777777777765443 5555 377
Q ss_pred ceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCC
Q 042802 94 KTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGN 173 (424)
Q Consensus 94 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 173 (424)
++|++++|.+.+.. ..++|++|++++|.+++..+. .+++|++|++++|++.+..+..+..+++|++|++++|
T Consensus 83 ~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 83 RTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp CEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS
T ss_pred CEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC
Confidence 77777777765332 336777777777777754433 2566777777777777666666777777777777777
Q ss_pred cCccCCCccC-CCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccE
Q 042802 174 KPSGSIPSCL-SNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQF 252 (424)
Q Consensus 174 ~~~~~~~~~l-~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 252 (424)
.+.+..+..+ ..+++|+.|++++|.++++ + ....+++|++|++++|.+++. |..+..+++|+.
T Consensus 155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--------------~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~ 218 (317)
T 3o53_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDV--------------K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTW 218 (317)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEE--------------E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSE
T ss_pred CCCcccHHHHhhccCcCCEEECCCCcCccc--------------c-cccccccCCEEECCCCcCCcc-hhhhcccCcccE
Confidence 7776655555 3567777777777776652 1 122367777788888877743 444777777888
Q ss_pred eeccCccccccchhhhcCCCCCCEEECcCCCCC-CCCcccccCCCCCCEEEcccc-cCccc
Q 042802 253 MDLAYNRSEGPIPELFGDLTSLEVLNLSKNKIS-GPIPTSMEKLVYLRELNLSFN-KLEGE 311 (424)
Q Consensus 253 L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n-~l~~~ 311 (424)
|++++|+++ .+|..+..+++|+.|++++|++. +.++..+..++.|+.+++++| .+.|.
T Consensus 219 L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp EECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred EECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 888888777 45666777778888888888777 566667777777777777743 34443
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.6e-28 Score=227.20 Aligned_cols=253 Identities=19% Similarity=0.232 Sum_probs=211.8
Q ss_pred ccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccC-CccCChhHH-------hcccccceeEeecCcC
Q 042802 32 TIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPL-DGFLPSSIG-------NLSMSLKTLIIANCSI 103 (424)
Q Consensus 32 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~-------~l~~~L~~L~l~~n~l 103 (424)
.++..++|++|++++|.+ .+| ..+... |+.|++++|.+ ...+|..+. .+ .+|++|++++|.+
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p------~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l 107 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADL------GQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI-SGLQELTLENLEV 107 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCC------HHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT-SCCCEEEEEEEBC
T ss_pred EEccCCCceeEeeccccc-ccH------HHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc-CCccEEEccCCcc
Confidence 355678899999999999 666 444433 89999999999 456777665 56 4999999999999
Q ss_pred cccchhhh--cCCcccceeecccCccccccCcccCCC-----CCCCeEEccCCcccccCChhhcCCcccceEeccCCcCc
Q 042802 104 IGNIRRAI--GNLSNLLALTLEGNKLTGPIPITFGRL-----QKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPS 176 (424)
Q Consensus 104 ~~~~~~~l--~~l~~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 176 (424)
.+.+|..+ ..+++|++|++++|.+++. |..++.+ ++|++|++++|++.+..|..+..+++|++|++++|.+.
T Consensus 108 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 108 TGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp BSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred cchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence 98888876 8999999999999999976 8877777 99999999999999888899999999999999999987
Q ss_pred cC--CCccC--CCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCc-hhhccCcCcc
Q 042802 177 GS--IPSCL--SNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIP-ATIVGLKDLQ 251 (424)
Q Consensus 177 ~~--~~~~l--~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~ 251 (424)
+. .+..+ ..+++|+.|++++|.++++. ......+..+++|++|++++|.+++..| ..+..+++|+
T Consensus 187 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 187 GERGLISALCPLKFPTLQVLALRNAGMETPS----------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp HHHHHHHHSCTTSCTTCCEEECTTSCCCCHH----------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred cchHHHHHHHhccCCCCCEEECCCCcCcchH----------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 54 23333 88999999999999987531 1111234567999999999999998775 4566789999
Q ss_pred EeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcc
Q 042802 252 FMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEG 310 (424)
Q Consensus 252 ~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 310 (424)
+|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9999999998 6777666 8999999999999976 55 8899999999999999985
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=5.6e-29 Score=230.90 Aligned_cols=249 Identities=22% Similarity=0.207 Sum_probs=213.4
Q ss_pred hhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHH
Q 042802 8 SITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIG 87 (424)
Q Consensus 8 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 87 (424)
.+..+++|++|++++|.+++..|..|+++++|++|++++|.+++.+ .+..+++|++|++++|.+++. +
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~l~~L~~L~Ls~n~l~~l-~---- 96 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-------DLESLSTLRTLDLNNNYVQEL-L---- 96 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-------EETTCTTCCEEECCSSEEEEE-E----
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-------hhhhcCCCCEEECcCCccccc-c----
Confidence 3455679999999999999888889999999999999999998763 388999999999999999843 3
Q ss_pred hcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhh-cCCcccc
Q 042802 88 NLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDEL-CHLARLA 166 (424)
Q Consensus 88 ~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l-~~l~~L~ 166 (424)
.. ++|++|++++|.+.+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|+
T Consensus 97 ~~-~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 97 VG-PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (317)
T ss_dssp EC-TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CC-CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCC
Confidence 22 4899999999999876544 46889999999999998778889999999999999999997777766 4789999
Q ss_pred eEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhcc
Q 042802 167 EFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVG 246 (424)
Q Consensus 167 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~ 246 (424)
+|++++|.+.+.. ....+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..
T Consensus 173 ~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~--------------l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 173 HLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF--------------MGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp EEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE--------------ECGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred EEECCCCcCcccc--cccccccCCEEECCCCcCCc--------------chhhhcccCcccEEECcCCccc-chhhHhhc
Confidence 9999999998663 23458999999999998876 4556888999999999999999 57888999
Q ss_pred CcCccEeeccCcccc-ccchhhhcCCCCCCEEECcCC-CCCCCCc
Q 042802 247 LKDLQFMDLAYNRSE-GPIPELFGDLTSLEVLNLSKN-KISGPIP 289 (424)
Q Consensus 247 l~~L~~L~ls~n~l~-~~~~~~l~~l~~L~~L~L~~n-~l~~~~~ 289 (424)
+++|+.|++++|.+. +..|..+..++.|+.|+++++ .+.+..+
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 999999999999998 778888999999999999854 4554443
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=4.2e-28 Score=237.78 Aligned_cols=234 Identities=21% Similarity=0.162 Sum_probs=151.2
Q ss_pred CCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCccc
Q 042802 38 NHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNL 117 (424)
Q Consensus 38 ~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L 117 (424)
+|++|++++|.+++.+. ..|..+++|+.|++++|.+++..| +..+ ++|++|++++|.+.+.. ..++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~l~~l~-----~~~~L 101 (487)
T 3oja_A 35 NVKELDLSGNPLSQISA-----ADLAPFTKLELLNLSSNVLYETLD--LESL-STLRTLDLNNNYVQELL-----VGPSI 101 (487)
T ss_dssp GCCEEECCSSCCCCCCG-----GGGTTCTTCCEEECTTSCCEEEEE--CTTC-TTCCEEECCSSEEEEEE-----ECTTC
T ss_pred CccEEEeeCCcCCCCCH-----HHHhCCCCCCEEEeeCCCCCCCcc--cccC-CCCCEEEecCCcCCCCC-----CCCCc
Confidence 55555555555555421 345555555555555555554333 4444 25666666666554322 22566
Q ss_pred ceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCC-CCCCCCEEEccC
Q 042802 118 LALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLS-NLTSLRSLYLGS 196 (424)
Q Consensus 118 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~ 196 (424)
++|++++|.+++..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++
T Consensus 102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 6666666666644332 245666666666666665566666666667777776666665555554 567777777777
Q ss_pred CCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCE
Q 042802 197 NSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEV 276 (424)
Q Consensus 197 n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 276 (424)
|.++++ + ....+++|+.|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.
T Consensus 179 N~l~~~--------------~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~ 241 (487)
T 3oja_A 179 NFIYDV--------------K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEH 241 (487)
T ss_dssp SCCCEE--------------E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCE
T ss_pred Cccccc--------------c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCE
Confidence 776652 1 12346778888888888885444 47788888888888888884 6777888888889
Q ss_pred EECcCCCCC-CCCcccccCCCCCCEEEcc
Q 042802 277 LNLSKNKIS-GPIPTSMEKLVYLRELNLS 304 (424)
Q Consensus 277 L~L~~n~l~-~~~~~~l~~l~~L~~L~l~ 304 (424)
|++++|++. +.+|..+..++.|+.++++
T Consensus 242 L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 999888887 5667777788888888876
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.1e-25 Score=225.12 Aligned_cols=256 Identities=25% Similarity=0.284 Sum_probs=206.0
Q ss_pred CCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccc
Q 042802 13 SKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMS 92 (424)
Q Consensus 13 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~ 92 (424)
.+++.|++++|.++ .+|..+. ++|++|++++|.++.+| . .+++|++|++++|.++ .+|. .+ ++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp------~---~l~~L~~L~Ls~N~l~-~lp~---~l-~~ 102 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLP------A---LPPELRTLEVSGNQLT-SLPV---LP-PG 102 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCC------C---CCTTCCEEEECSCCCS-CCCC---CC-TT
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCC------C---cCCCCCEEEcCCCcCC-cCCC---CC-CC
Confidence 46899999999998 5666554 78999999999998876 3 4688999999999988 5665 34 58
Q ss_pred cceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccC
Q 042802 93 LKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILG 172 (424)
Q Consensus 93 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 172 (424)
|++|++++|.+.+. |. .+++|++|++++|.+++ +|.. +++|++|++++|.+.+ +|. .+++|+.|++++
T Consensus 103 L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~ 170 (622)
T 3g06_A 103 LLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYN 170 (622)
T ss_dssp CCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCC
Confidence 99999999988653 43 56889999999999884 5653 4889999999998874 443 346788999999
Q ss_pred CcCccCCCccCCCCCCCCEEEccCCCCCC-------ceeeeccCCcccccccccccccCcccEEECccCcccccCchhhc
Q 042802 173 NKPSGSIPSCLSNLTSLRSLYLGSNSLKD-------ILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIV 245 (424)
Q Consensus 173 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-------i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 245 (424)
|.+.+ +| ..+++|+.|++++|.+++ +..+++++|.+.. +|. .+++|+.|++++|.+++ +| .
T Consensus 171 N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~ 238 (622)
T 3g06_A 171 NQLTS-LP---MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---V 238 (622)
T ss_dssp SCCSC-CC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---C
T ss_pred CCCCC-Cc---ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---C
Confidence 98885 44 456889999999988776 3678888888775 343 24789999999999985 55 4
Q ss_pred cCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCC
Q 042802 246 GLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPS 314 (424)
Q Consensus 246 ~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 314 (424)
.+++|+.|++++|.++ .+|. .+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++..|.
T Consensus 239 ~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 239 LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 5689999999999998 4554 6789999999999999 7788899999999999999999877653
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=5.2e-28 Score=237.09 Aligned_cols=246 Identities=18% Similarity=0.183 Sum_probs=182.9
Q ss_pred CCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCe
Q 042802 64 NCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQG 143 (424)
Q Consensus 64 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 143 (424)
.+++|+.|++++|.+++..|..+..++ +|++|++++|.+.+..| +..+++|++|++++|.+++.. ..++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 445888888888888877777888874 88888888888876655 788888888888888888432 2378888
Q ss_pred EEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCccccccccccc-c
Q 042802 144 LDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIG-N 222 (424)
Q Consensus 144 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~-~ 222 (424)
|++++|.+.+..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.++++ .|..+. .
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------------~~~~l~~~ 167 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-------------NFAELAAS 167 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE-------------EGGGGGGG
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc-------------ChHHHhhh
Confidence 88888888765543 457788888888888888787888888888888888877652 444554 6
Q ss_pred cCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEE
Q 042802 223 LKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELN 302 (424)
Q Consensus 223 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 302 (424)
+++|+.|++++|.+++. |. ...+++|+.|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|+
T Consensus 168 l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFD 243 (487)
T ss_dssp TTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEE
T ss_pred CCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEE
Confidence 78888888888888855 32 3358888888888888886444 47888888888888888884 666788888888888
Q ss_pred cccccCc-ccCCCC-Cccccccccccc-------CCcCCcCCCC
Q 042802 303 LSFNKLE-GEIPSG-GIFTSFIAESFM-------GNELLCGLPN 337 (424)
Q Consensus 303 l~~n~l~-~~~p~~-~~~~~l~~~~~~-------~n~~lc~~~~ 337 (424)
+++|++. +.+|.. ..++.+..+.+. +++..|.++.
T Consensus 244 l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp CTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred cCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 8888887 333321 333444444443 6666676543
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2.8e-26 Score=208.50 Aligned_cols=212 Identities=19% Similarity=0.180 Sum_probs=169.8
Q ss_pred cccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEec
Q 042802 91 MSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVI 170 (424)
Q Consensus 91 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 170 (424)
.+|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46777777777777666667777788888888888877666667778888888888888887666677788888888888
Q ss_pred cCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCc
Q 042802 171 LGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDL 250 (424)
Q Consensus 171 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 250 (424)
++|.+.+..+..+..+++|+.|++++|.++.+ .+|..+..+++|++|++++|.+++..+..+..+.+|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSF------------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC------------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCcccee------------cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 88888777666788888888888888887652 246778888999999999999987777777777777
Q ss_pred c----EeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCCC
Q 042802 251 Q----FMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSG 315 (424)
Q Consensus 251 ~----~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 315 (424)
+ .|++++|.+++..+..+ ...+|++|++++|.+++..+..+..+++|+.|++++|++.+..|..
T Consensus 176 ~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 176 PLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp TTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred cccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 6 89999999986555544 4458999999999999777777889999999999999999887755
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=3.2e-25 Score=201.51 Aligned_cols=207 Identities=27% Similarity=0.279 Sum_probs=137.3
Q ss_pred cCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEc
Q 042802 67 KLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDL 146 (424)
Q Consensus 67 ~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 146 (424)
+|+.|++++|.+++..+..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 455555555555544444555552 5666666666555555555666666666666666666555555666666666666
Q ss_pred cCCcccccCChhhcCCcccceEeccCCcCccC-CCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCc
Q 042802 147 AFNKLVGSFPDELCHLARLAEFVILGNKPSGS-IPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKV 225 (424)
Q Consensus 147 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~ 225 (424)
++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|+.|++++|.++++ .+..+..+++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~l~~ 174 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-------------YCTDLRVLHQ 174 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-------------CGGGGHHHHT
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-------------CHHHhhhhhh
Confidence 66666654444566666666666666666553 466677777777777777766552 2334445555
Q ss_pred cc----EEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCC
Q 042802 226 LV----RINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPI 288 (424)
Q Consensus 226 L~----~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 288 (424)
|+ +|++++|.+++..+..+. ..+|+.|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 175 L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 55 788999998866555554 458999999999999777777889999999999999998643
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.8e-24 Score=195.76 Aligned_cols=206 Identities=23% Similarity=0.224 Sum_probs=118.1
Q ss_pred cCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEc
Q 042802 67 KLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDL 146 (424)
Q Consensus 67 ~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 146 (424)
..+.++++++.++ .+|..+ +.++++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 3456666666665 344433 235666666666655544445555666666666666555433334455555555555
Q ss_pred cCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcc
Q 042802 147 AFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVL 226 (424)
Q Consensus 147 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L 226 (424)
++|++.+..+..|..+++|++|++++|.+.+..+.. +..+++|
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------------------------~~~l~~L 135 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV-------------------------------------FDSLTKL 135 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTT-------------------------------------TTTCTTC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHH-------------------------------------hCcCcCC
Confidence 555555433334444444444444444444333333 4455555
Q ss_pred cEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccc
Q 042802 227 VRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFN 306 (424)
Q Consensus 227 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 306 (424)
++|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 55555555555444445666666667777776666555555666777777777777777555555666777777777777
Q ss_pred cCcccCC
Q 042802 307 KLEGEIP 313 (424)
Q Consensus 307 ~l~~~~p 313 (424)
++.+..+
T Consensus 216 ~~~c~c~ 222 (270)
T 2o6q_A 216 PWDCTCN 222 (270)
T ss_dssp CBCCSSS
T ss_pred CeeCCCc
Confidence 7765544
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=9.8e-25 Score=199.37 Aligned_cols=200 Identities=21% Similarity=0.145 Sum_probs=131.1
Q ss_pred ccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEecc
Q 042802 92 SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171 (424)
Q Consensus 92 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 171 (424)
++++++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|+.|++++|.+.+..+. ..+++|+.|+++
T Consensus 11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence 6777777777764 3444332 5677777777777766666677777777777777777643222 566677777777
Q ss_pred CCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCcc
Q 042802 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQ 251 (424)
Q Consensus 172 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 251 (424)
+|.+. .+|..+..+++|+.|++++|+++.+ .+..+..+++|++|++++|.+++..+..|..+++|+
T Consensus 86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL-------------PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCCCC-------------CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCcCC-cCchhhccCCCCCEEECCCCcCccc-------------CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 77766 4555666677777777776666542 334566667777777777777655555566677777
Q ss_pred EeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCccc
Q 042802 252 FMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGE 311 (424)
Q Consensus 252 ~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 311 (424)
.|++++|++++..+..|..+++|++|+|++|+++ .+|..+...++|+.+++++|++.+.
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 7777777776555555666677777777777776 4555565666677777777766544
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.2e-24 Score=217.86 Aligned_cols=248 Identities=23% Similarity=0.274 Sum_probs=205.8
Q ss_pred cCchhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCC
Q 042802 4 TIPSSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLP 83 (424)
Q Consensus 4 ~lp~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 83 (424)
.+|..+. ++|++|++++|.+++ +|. .+++|++|++++|.++++| . .+++|+.|++++|.+++ +|
T Consensus 54 ~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp------~---~l~~L~~L~Ls~N~l~~-l~ 117 (622)
T 3g06_A 54 TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLP------V---LPPGLLELSIFSNPLTH-LP 117 (622)
T ss_dssp CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCC------C---CCTTCCEEEECSCCCCC-CC
T ss_pred ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCC------C---CCCCCCEEECcCCcCCC-CC
Confidence 5677665 799999999999984 554 5799999999999999887 3 67899999999999984 55
Q ss_pred hhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCc
Q 042802 84 SSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLA 163 (424)
Q Consensus 84 ~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 163 (424)
. .+ .+|++|++++|.++. +|. .+++|++|++++|.+++ +|. .+.+|+.|++++|.+.+ +| ..++
T Consensus 118 ~---~l-~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~ 181 (622)
T 3g06_A 118 A---LP-SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPS 181 (622)
T ss_dssp C---CC-TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCT
T ss_pred C---CC-CCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCC
Confidence 5 33 589999999999865 444 35899999999999984 554 35789999999999984 55 4578
Q ss_pred ccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCC-------ceeeeccCCcccccccccccccCcccEEECccCcc
Q 042802 164 RLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD-------ILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNL 236 (424)
Q Consensus 164 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-------i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 236 (424)
+|+.|++++|.+.+ +|. ..++|+.|++++|.++. ++.+++++|.+.+ +| ..+++|++|++++|.+
T Consensus 182 ~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L 253 (622)
T 3g06_A 182 GLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRL 253 (622)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCC
T ss_pred CCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCC
Confidence 89999999999885 343 24789999999998765 5889999998887 45 4568999999999999
Q ss_pred cccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCC
Q 042802 237 SGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLV 296 (424)
Q Consensus 237 ~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 296 (424)
+ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|+|++|++++..|..+..++
T Consensus 254 ~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 254 T-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp S-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred C-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 8 5555 6789999999999999 6788899999999999999999988887666543
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=3.9e-25 Score=200.39 Aligned_cols=208 Identities=23% Similarity=0.241 Sum_probs=103.0
Q ss_pred CCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcC
Q 042802 34 GNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGN 113 (424)
Q Consensus 34 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~ 113 (424)
..+++|+.|++++|.++.++ .+..+++|+.|++++|.+++ + ..+..+ ++|++|++++|.+.+..+..+..
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-------~l~~l~~L~~L~l~~n~l~~-~-~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~ 107 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-------GIQYLPNVRYLALGGNKLHD-I-SALKEL-TNLTYLILTGNQLQSLPNGVFDK 107 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-------TGGGCTTCCEEECTTSCCCC-C-GGGTTC-TTCCEEECTTSCCCCCCTTTTTT
T ss_pred ccccceeeeeeCCCCccccc-------ccccCCCCcEEECCCCCCCC-c-hhhcCC-CCCCEEECCCCccCccChhHhcC
Confidence 34555666666555555442 34455555555555555543 1 234444 24555555555554444444445
Q ss_pred CcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEE
Q 042802 114 LSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLY 193 (424)
Q Consensus 114 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 193 (424)
+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------- 176 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV----------- 176 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----------
T ss_pred CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH-----------
Confidence 555555555555554433334444555555555555444333333444444444444444444333333
Q ss_pred ccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCC
Q 042802 194 LGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTS 273 (424)
Q Consensus 194 l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~ 273 (424)
+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+. +++
T Consensus 177 --------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~ 223 (272)
T 3rfs_A 177 --------------------------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPG 223 (272)
T ss_dssp --------------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTT
T ss_pred --------------------------hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcH
Confidence 34445555555555555544444455555555555555555432 334
Q ss_pred CCEEECcCCCCCCCCcccccCC
Q 042802 274 LEVLNLSKNKISGPIPTSMEKL 295 (424)
Q Consensus 274 L~~L~L~~n~l~~~~~~~l~~l 295 (424)
|+.|++..|.++|.+|..++.+
T Consensus 224 l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 224 IRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp THHHHHHHHHTGGGBBCTTSCB
T ss_pred HHHHHHHHHhCCCcccCccccc
Confidence 5555556666666555555443
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=5.9e-25 Score=199.21 Aligned_cols=212 Identities=21% Similarity=0.268 Sum_probs=181.3
Q ss_pred hhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHH
Q 042802 8 SITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIG 87 (424)
Q Consensus 8 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 87 (424)
.+..+++|+.|++++|.++. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+.
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-------~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 106 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI-------SALKELTNLTYLILTGNQLQSLPNGVFD 106 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC-------GGGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc-------hhhcCCCCCCEEECCCCccCccChhHhc
Confidence 35578999999999999884 3 3588999999999999999875 4688999999999999999977777778
Q ss_pred hcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccce
Q 042802 88 NLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAE 167 (424)
Q Consensus 88 ~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 167 (424)
.+ ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|+.
T Consensus 107 ~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 107 KL-TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp TC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CC-cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence 88 49999999999999888888999999999999999999777777899999999999999999777777899999999
Q ss_pred EeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccC
Q 042802 168 FVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGL 247 (424)
Q Consensus 168 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l 247 (424)
|++++|.+.+..+..+..+++|+.|++++|.+.. .+++|+++++..|.++|.+|.+++.+
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------------------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 186 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------------------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC--------------------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred EECCCCcCCccCHHHHhCCcCCCEEEccCCCccc--------------------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 9999999998888888889999999888887643 24567777777777777777766654
Q ss_pred cC
Q 042802 248 KD 249 (424)
Q Consensus 248 ~~ 249 (424)
..
T Consensus 246 ~~ 247 (272)
T 3rfs_A 246 AP 247 (272)
T ss_dssp CG
T ss_pred CC
Confidence 43
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=5e-24 Score=192.92 Aligned_cols=205 Identities=24% Similarity=0.297 Sum_probs=159.5
Q ss_pred ccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEcc
Q 042802 116 NLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLG 195 (424)
Q Consensus 116 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 195 (424)
+.++++++++.++ .+|..+. ++++.|++++|++.+..+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3556666666666 3554432 456677777776665555566667777777777777765555566777888888887
Q ss_pred CCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCC
Q 042802 196 SNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLE 275 (424)
Q Consensus 196 ~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~ 275 (424)
+|.++.+ .+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+
T Consensus 94 ~n~l~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 94 DNKLQAL-------------PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp SSCCCCC-------------CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCcCCcC-------------CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence 7776653 334567788899999999999877788899999999999999999977777799999999
Q ss_pred EEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCCC-CcccccccccccCCcCCcCCC
Q 042802 276 VLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPSG-GIFTSFIAESFMGNELLCGLP 336 (424)
Q Consensus 276 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 336 (424)
+|++++|.+++..+..+..+++|++|++++|++++..+.. ..++++..+++.+|++.|+++
T Consensus 161 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred eeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 9999999999877778999999999999999998654432 557788999999999999864
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.2e-23 Score=192.24 Aligned_cols=178 Identities=25% Similarity=0.219 Sum_probs=96.4
Q ss_pred ccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEecc
Q 042802 92 SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171 (424)
Q Consensus 92 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 171 (424)
++++|++++|.+.+..+..+..+++|++|++++|.+++. +.. +.+++|++|++++|++. .+|..+..+++|+.|+++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 344444444444444444444444444444444444422 111 34445555555555444 344444455555555555
Q ss_pred CCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCcc
Q 042802 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQ 251 (424)
Q Consensus 172 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 251 (424)
+|.+++..+..|..+++|+.|++++|+++.+ .+..+..+++|+.|++++|.+++..+..|..+++|+
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTL-------------PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-------------CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCcc-------------ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence 5555544445555555555555555555432 233345556666666666666644444556677777
Q ss_pred EeeccCccccccchhhhcCCCCCCEEECcCCCCCC
Q 042802 252 FMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISG 286 (424)
Q Consensus 252 ~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 286 (424)
.|++++|+++ .+|..+...++|+.|+|++|++..
T Consensus 176 ~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp EEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred EEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 7777777776 455566666777777777777763
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=6.1e-26 Score=216.43 Aligned_cols=251 Identities=17% Similarity=0.144 Sum_probs=129.2
Q ss_pred cCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCcc---CCccCChhH-------HhcccccceeE
Q 042802 28 FIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNP---LDGFLPSSI-------GNLSMSLKTLI 97 (424)
Q Consensus 28 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~---~~~~~~~~~-------~~l~~~L~~L~ 97 (424)
.++..+..+++|++|++++|.++.... ..+...+..+++|+.|++++|. +.+.+|..+ ..+ ++|++|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~-~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~-~~L~~L~ 100 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAA-RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVR 100 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHH-HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC-TTCCEEE
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHH-HHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC-CcccEEE
Confidence 345566677888888888887765410 0011346677888888887753 444555554 344 3566666
Q ss_pred eecCcCcc----cchhhhcCCcccceeecccCccccccCcc----cCCC---------CCCCeEEccCCccc-ccCC---
Q 042802 98 IANCSIIG----NIRRAIGNLSNLLALTLEGNKLTGPIPIT----FGRL---------QKLQGLDLAFNKLV-GSFP--- 156 (424)
Q Consensus 98 l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~p~~----~~~l---------~~L~~L~L~~n~~~-~~~~--- 156 (424)
+++|.+.. .++..+..+++|++|++++|.++...+.. +..+ ++|++|++++|++. ...+
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 66666654 24455556666666666666654322222 2222 55555555555554 2222
Q ss_pred hhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcc
Q 042802 157 DELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNL 236 (424)
Q Consensus 157 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 236 (424)
..+..+++|+.|++++|.+... ++ ....+..+..+++|++|++++|.+
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~----------------------g~----------~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPE----------------------GI----------EHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHH----------------------HH----------HHHHHTTGGGCTTCCEEECCSSCC
T ss_pred HHHHhCCCcCEEECcCCCCCHh----------------------HH----------HHHHHHHhhcCCCccEEECcCCCC
Confidence 2333444444444444444310 00 001122344455555555555555
Q ss_pred c----ccCchhhccCcCccEeeccCcccccc----chhhh--cCCCCCCEEECcCCCCCC----CCcccc-cCCCCCCEE
Q 042802 237 S----GDIPATIVGLKDLQFMDLAYNRSEGP----IPELF--GDLTSLEVLNLSKNKISG----PIPTSM-EKLVYLREL 301 (424)
Q Consensus 237 ~----~~~p~~~~~l~~L~~L~ls~n~l~~~----~~~~l--~~l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L 301 (424)
+ +.+|..+..+++|+.|++++|.+++. ++..+ +.+++|++|+|++|.+++ .+|..+ .++++|++|
T Consensus 229 ~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L 308 (386)
T 2ca6_A 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308 (386)
T ss_dssp HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred CcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 3 34444555555555555555555543 33334 225555566665555554 244444 345555666
Q ss_pred EcccccCcccC
Q 042802 302 NLSFNKLEGEI 312 (424)
Q Consensus 302 ~l~~n~l~~~~ 312 (424)
++++|++++..
T Consensus 309 ~l~~N~l~~~~ 319 (386)
T 2ca6_A 309 ELNGNRFSEED 319 (386)
T ss_dssp ECTTSBSCTTS
T ss_pred EccCCcCCcch
Confidence 66665555433
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.7e-25 Score=213.36 Aligned_cols=252 Identities=19% Similarity=0.223 Sum_probs=177.9
Q ss_pred cCchhhhcCCCCCEEeccCCcccccCc----cccCCCCCCCEEEccCCccCCC----CCcc-cccccccCCccCceeecc
Q 042802 4 TIPSSITNASKLTVLELGGNTFSGFIP----NTIGNLRNHEWLNLANNSLTSS----TSKL-SFLSSLANCKKLRNINLI 74 (424)
Q Consensus 4 ~lp~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~----~~~~-~~~~~l~~l~~L~~L~l~ 74 (424)
.++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+..+ |..+ .+...+..+++|+.|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 567888999999999999999987644 4477899999999999876644 2111 112345789999999999
Q ss_pred CccCCc----cCChhHHhcccccceeEeecCcCcccchhhhc----CC---------cccceeecccCccc-cccC---c
Q 042802 75 GNPLDG----FLPSSIGNLSMSLKTLIIANCSIIGNIRRAIG----NL---------SNLLALTLEGNKLT-GPIP---I 133 (424)
Q Consensus 75 ~n~~~~----~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~----~l---------~~L~~L~l~~n~l~-~~~p---~ 133 (424)
+|.++. .++..+..++ +|++|++++|.+....+..+. .+ ++|++|++++|.++ ..++ .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCT-TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCC-CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 999997 4777888884 999999999999655444443 34 89999999999997 3444 4
Q ss_pred ccCCCCCCCeEEccCCcccc-----cCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeecc
Q 042802 134 TFGRLQKLQGLDLAFNKLVG-----SFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFS 208 (424)
Q Consensus 134 ~~~~l~~L~~L~L~~n~~~~-----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~ 208 (424)
.+..+++|++|++++|++.. ..+..+..+++|+.|++++|.++...
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g----------------------------- 232 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG----------------------------- 232 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-----------------------------
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-----------------------------
Confidence 67789999999999998872 12224555556666665555553100
Q ss_pred CCcccccccccccccCcccEEECccCccccc----Cchhhc--cCcCccEeeccCccccc----cchhhh-cCCCCCCEE
Q 042802 209 SNFLVGPLSLDIGNLKVLVRINLSKNNLSGD----IPATIV--GLKDLQFMDLAYNRSEG----PIPELF-GDLTSLEVL 277 (424)
Q Consensus 209 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~--~l~~L~~L~ls~n~l~~----~~~~~l-~~l~~L~~L 277 (424)
.+.+|..+..+++|++|++++|.+++. ++..+. .+++|+.|++++|.+++ .+|..+ ..+++|++|
T Consensus 233 ----~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L 308 (386)
T 2ca6_A 233 ----SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308 (386)
T ss_dssp ----HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred ----HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 011333445555566666666665543 344553 37778888888887776 366665 557888888
Q ss_pred ECcCCCCCCCCc
Q 042802 278 NLSKNKISGPIP 289 (424)
Q Consensus 278 ~L~~n~l~~~~~ 289 (424)
++++|++++..+
T Consensus 309 ~l~~N~l~~~~~ 320 (386)
T 2ca6_A 309 ELNGNRFSEEDD 320 (386)
T ss_dssp ECTTSBSCTTSH
T ss_pred EccCCcCCcchh
Confidence 888888886653
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=1.9e-23 Score=185.51 Aligned_cols=197 Identities=20% Similarity=0.195 Sum_probs=134.0
Q ss_pred cccceeEeecCcCcccchhhhcCCcccceeecccCc-cccccCcccCCCCCCCeEEccC-CcccccCChhhcCCcccceE
Q 042802 91 MSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNK-LTGPIPITFGRLQKLQGLDLAF-NKLVGSFPDELCHLARLAEF 168 (424)
Q Consensus 91 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L 168 (424)
.+|++|++++|.+.+..+..|.++++|++|++++|. ++...+..|..+++|++|++++ |.+.+..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 467777777777766666677777777777777775 6655555677777777777776 77775555667777777777
Q ss_pred eccCCcCccCCCccCCCCCCCC---EEEccCC-CCCCceeeeccCCcccccccccccccCccc-EEECccCcccccCchh
Q 042802 169 VILGNKPSGSIPSCLSNLTSLR---SLYLGSN-SLKDILFFDFSSNFLVGPLSLDIGNLKVLV-RINLSKNNLSGDIPAT 243 (424)
Q Consensus 169 ~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~p~~ 243 (424)
++++|.+.+ +|+ +..+++|+ .|++++| .++.+ .+..+..+++|+ +|++++|.++...+..
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i-------------~~~~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSI-------------PVNAFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEE-------------CTTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhc-------------CcccccchhcceeEEEcCCCCCcccCHhh
Confidence 777777765 444 66677776 7777666 55542 334466677777 7777777777333333
Q ss_pred hccCcCccEeeccCcc-ccccchhhhcCC-CCCCEEECcCCCCCCCCcccccCCCCCCEEEcccc
Q 042802 244 IVGLKDLQFMDLAYNR-SEGPIPELFGDL-TSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFN 306 (424)
Q Consensus 244 ~~~l~~L~~L~ls~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 306 (424)
+.. ++|+.|++++|+ +++..+..|..+ ++|+.|++++|++++. |.. .+++|+.|+++++
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 433 677888888874 775556667777 7788888888877743 332 5667777777765
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=6.9e-25 Score=205.11 Aligned_cols=233 Identities=18% Similarity=0.187 Sum_probs=130.9
Q ss_pred ccCceeeccCccCCccCChhHHhcccccceeEeecCcCccc-chhhhcCCcccceeecccCccccccCcccCCCCCCCeE
Q 042802 66 KKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGN-IRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGL 144 (424)
Q Consensus 66 ~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 144 (424)
++++.|++++|.+.+..+. +..+ .+|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~-~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSP-FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCC-BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccC-CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 3444444444444433322 2223 2444444444444332 34444444555555555554444444444445555555
Q ss_pred EccCC-cccc-cCChhhcCCcccceEeccCC-cCccC-CCccCCCCC-CCCEEEccCCC--CCCceeeeccCCccccccc
Q 042802 145 DLAFN-KLVG-SFPDELCHLARLAEFVILGN-KPSGS-IPSCLSNLT-SLRSLYLGSNS--LKDILFFDFSSNFLVGPLS 217 (424)
Q Consensus 145 ~L~~n-~~~~-~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~~L~l~~n~--l~~i~~l~l~~n~~~~~~~ 217 (424)
++++| .+.+ .++..+..+++|++|++++| .+++. ++..+..++ +|+.|++++|. ++. +.++
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~------------~~l~ 215 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK------------SDLS 215 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH------------HHHH
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH------------HHHH
Confidence 55555 3332 13334445555555555555 44432 334445556 66666666662 321 1244
Q ss_pred ccccccCcccEEECccCc-ccccCchhhccCcCccEeeccCcc-ccccchhhhcCCCCCCEEECcCCCCCCCCcccccCC
Q 042802 218 LDIGNLKVLVRINLSKNN-LSGDIPATIVGLKDLQFMDLAYNR-SEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKL 295 (424)
Q Consensus 218 ~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 295 (424)
..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| +....-..+.
T Consensus 216 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~-- 292 (336)
T 2ast_B 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK-- 292 (336)
T ss_dssp HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--
T ss_pred HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--
Confidence 456667888888888887 666777778888899999998884 33222235778899999999998 4432222221
Q ss_pred CCCCEEEcccccCcccCCCC
Q 042802 296 VYLRELNLSFNKLEGEIPSG 315 (424)
Q Consensus 296 ~~L~~L~l~~n~l~~~~p~~ 315 (424)
..+..|++++|++++..|..
T Consensus 293 ~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 293 EALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp HHSTTSEESCCCSCCTTCSS
T ss_pred hhCcceEEecccCccccCCc
Confidence 23566678999999887754
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=9.6e-24 Score=194.99 Aligned_cols=226 Identities=17% Similarity=0.196 Sum_probs=139.6
Q ss_pred cCceeeccCccCCccCCh---hHHhcccccceeEeecCcCcccchhhh--cCCcccceeecccCccccccC----cccCC
Q 042802 67 KLRNINLIGNPLDGFLPS---SIGNLSMSLKTLIIANCSIIGNIRRAI--GNLSNLLALTLEGNKLTGPIP----ITFGR 137 (424)
Q Consensus 67 ~L~~L~l~~n~~~~~~~~---~~~~l~~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~p----~~~~~ 137 (424)
.++.+.+.++.+....-. .+..+ .+|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 456666666655422111 11122 257777777777777777666 677777777777777775443 23446
Q ss_pred CCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccC--C--CccCCCCCCCCEEEccCCCCCCceeeeccCCccc
Q 042802 138 LQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGS--I--PSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLV 213 (424)
Q Consensus 138 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~ 213 (424)
+++|++|++++|++.+..+..+..+++|++|++++|.+.+. . +..+..+++|++|++++|.++.+.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---------- 213 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT---------- 213 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH----------
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH----------
Confidence 77777777777777766666777777777777777765431 1 222356677777777777665420
Q ss_pred ccccc-cccccCcccEEECccCcccccCchhhccC---cCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCc
Q 042802 214 GPLSL-DIGNLKVLVRINLSKNNLSGDIPATIVGL---KDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIP 289 (424)
Q Consensus 214 ~~~~~-~l~~l~~L~~L~l~~n~l~~~~p~~~~~l---~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 289 (424)
..+. .+..+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|+|++|++++. |
T Consensus 214 -~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~ 288 (310)
T 4glp_A 214 -GVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P 288 (310)
T ss_dssp -HHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C
T ss_pred -HHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c
Confidence 0111 13556677777777777776656555554 57777777777776 4555443 6777777777777643 2
Q ss_pred ccccCCCCCCEEEcccccCc
Q 042802 290 TSMEKLVYLRELNLSFNKLE 309 (424)
Q Consensus 290 ~~l~~l~~L~~L~l~~n~l~ 309 (424)
. +..+++|+.|++++|+++
T Consensus 289 ~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 289 Q-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp C-TTSCCCCSCEECSSTTTS
T ss_pred h-hhhCCCccEEECcCCCCC
Confidence 2 456677777777777665
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.1e-24 Score=205.91 Aligned_cols=261 Identities=18% Similarity=0.174 Sum_probs=153.9
Q ss_pred EEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCc-cCceeeccCccCCccCChhHHhc----cc
Q 042802 17 VLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCK-KLRNINLIGNPLDGFLPSSIGNL----SM 91 (424)
Q Consensus 17 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l----~~ 91 (424)
.+++++|.+++.+|..+...++|++|++++|.+++.+. ..+...+..++ +|+.|++++|.+++..+..+..+ +.
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIST-VELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCH-HHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHH-HHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 45777788887777766666668888888888777641 11113456666 78888888888876666666664 13
Q ss_pred ccceeEeecCcCcccchhhhc----CC-cccceeecccCccccccCccc----CC-CCCCCeEEccCCcccccC----Ch
Q 042802 92 SLKTLIIANCSIIGNIRRAIG----NL-SNLLALTLEGNKLTGPIPITF----GR-LQKLQGLDLAFNKLVGSF----PD 157 (424)
Q Consensus 92 ~L~~L~l~~n~l~~~~~~~l~----~l-~~L~~L~l~~n~l~~~~p~~~----~~-l~~L~~L~L~~n~~~~~~----~~ 157 (424)
+|++|++++|.+.+..+..+. .+ ++|++|++++|.+++..+..+ .. ..+|++|++++|.+.... +.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 788888888887766655433 33 678888888888775444332 33 357788888887776433 33
Q ss_pred hhcCCc-ccceEeccCCcCccCCCcc----CCCC-CCCCEEEccCCCCCCceeeeccCCcccccccccccc-cCcccEEE
Q 042802 158 ELCHLA-RLAEFVILGNKPSGSIPSC----LSNL-TSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGN-LKVLVRIN 230 (424)
Q Consensus 158 ~l~~l~-~L~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~-l~~L~~L~ 230 (424)
.+...+ +|++|++++|.+++..+.. +..+ ++|+.|++++|.++... ...++..+.. .++|++|+
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~---------~~~l~~~l~~~~~~L~~L~ 231 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS---------YAELAYIFSSIPNHVVSLN 231 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC---------HHHHHHHHHHSCTTCCEEE
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH---------HHHHHHHHhcCCCCceEEE
Confidence 334444 6777777777666544432 2233 36666666666654310 0012223333 23566666
Q ss_pred CccCcccccCc----hhhccCcCccEeeccCcccccc-------chhhhcCCCCCCEEECcCCCCCCC
Q 042802 231 LSKNNLSGDIP----ATIVGLKDLQFMDLAYNRSEGP-------IPELFGDLTSLEVLNLSKNKISGP 287 (424)
Q Consensus 231 l~~n~l~~~~p----~~~~~l~~L~~L~ls~n~l~~~-------~~~~l~~l~~L~~L~L~~n~l~~~ 287 (424)
+++|.+++..+ ..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|++...
T Consensus 232 Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 66666654333 2234456666666666663322 223444555566666666665544
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=3.2e-23 Score=184.06 Aligned_cols=196 Identities=18% Similarity=0.194 Sum_probs=129.0
Q ss_pred CCCEEEccCCccCCCCCcccccccccCCccCceeeccCcc-CCccCChhHHhcccccceeEeec-CcCcccchhhhcCCc
Q 042802 38 NHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNP-LDGFLPSSIGNLSMSLKTLIIAN-CSIIGNIRRAIGNLS 115 (424)
Q Consensus 38 ~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~~L~~L~l~~-n~l~~~~~~~l~~l~ 115 (424)
+|++|++++|.+++++. ..+..+++|+.|++++|. ++...+..+..++ +|++|++++ |.+.+..+..|.+++
T Consensus 32 ~l~~L~l~~n~l~~i~~-----~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS-----HAFSNLPNISRIYVSIDVTLQQLESHSFYNLS-KVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp TCCEEEEESCCCSEECT-----TTTTTCTTCCEEEEECCSSCCEECTTTEESCT-TCCEEEEEEETTCCEECTTSEECCT
T ss_pred cccEEEEeCCcceEECH-----HHccCCCCCcEEeCCCCCCcceeCHhHcCCCc-CCcEEECCCCCCeeEcCHHHhCCCC
Confidence 67777777777776643 456667777777777775 6644444566663 777777776 677665556677777
Q ss_pred ccceeecccCccccccCcccCCCCCCC---eEEccCC-cccccCChhhcCCcccc-eEeccCCcCccCCCccCCCCCCCC
Q 042802 116 NLLALTLEGNKLTGPIPITFGRLQKLQ---GLDLAFN-KLVGSFPDELCHLARLA-EFVILGNKPSGSIPSCLSNLTSLR 190 (424)
Q Consensus 116 ~L~~L~l~~n~l~~~~p~~~~~l~~L~---~L~L~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~ 190 (424)
+|++|++++|.+++ +|. +..+++|+ +|++++| .+.+..+..|..+++|+ .|++++|.+....+..+.. ++|+
T Consensus 106 ~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~ 182 (239)
T 2xwt_C 106 LLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLD 182 (239)
T ss_dssp TCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEE
T ss_pred CCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCC
Confidence 77777777777774 554 66677776 7777777 66655555677777777 7777777776443334444 6777
Q ss_pred EEEccCCC-CCCceeeeccCCccccccccccccc-CcccEEECccCcccccCchhhccCcCccEeeccCc
Q 042802 191 SLYLGSNS-LKDILFFDFSSNFLVGPLSLDIGNL-KVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYN 258 (424)
Q Consensus 191 ~L~l~~n~-l~~i~~l~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n 258 (424)
.|++++|. ++.+ .+..+..+ ++|+.|++++|.+++ +|.. .+++|+.|+++++
T Consensus 183 ~L~L~~n~~l~~i-------------~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 183 AVYLNKNKYLTVI-------------DKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EEECTTCTTCCEE-------------CTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred EEEcCCCCCcccC-------------CHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 77777773 5542 23456666 777777777777773 3333 4667777777665
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=2e-22 Score=180.34 Aligned_cols=180 Identities=21% Similarity=0.218 Sum_probs=111.3
Q ss_pred cceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccC
Q 042802 117 LLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGS 196 (424)
Q Consensus 117 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 196 (424)
.++++++++.++ .+|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 344555555554 3443332 3455555555555544444555555555555555555555555555666666666666
Q ss_pred CCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCE
Q 042802 197 NSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEV 276 (424)
Q Consensus 197 n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 276 (424)
|.++.+ .+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++
T Consensus 93 n~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 93 NQLASL-------------PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159 (251)
T ss_dssp SCCCCC-------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred Cccccc-------------ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence 555442 2334555666666666666666555555667777777777777777665556777777777
Q ss_pred EECcCCCCCCCCcccccCCCCCCEEEcccccCcccC
Q 042802 277 LNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEI 312 (424)
Q Consensus 277 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 312 (424)
|+|++|++++..+..+..+++|+.|++++|++.+..
T Consensus 160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 777777777666667777777777777777777653
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=5.6e-25 Score=205.72 Aligned_cols=224 Identities=18% Similarity=0.207 Sum_probs=168.8
Q ss_pred cCceeeccCccCCccCChhHHhc-ccccceeEeecCcCcccchhhhcCCcccceeecccCccccc-cCcccCCCCCCCeE
Q 042802 67 KLRNINLIGNPLDGFLPSSIGNL-SMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGP-IPITFGRLQKLQGL 144 (424)
Q Consensus 67 ~L~~L~l~~n~~~~~~~~~~~~l-~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L 144 (424)
.++.++++++.+. +..+..+ ..+++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4678888887776 3444444 13788888888888766554 55788889999988888755 67778888889999
Q ss_pred EccCCcccccCChhhcCCcccceEeccCC-cCcc-CCCccCCCCCCCCEEEccCC-CCCCceeeeccCCccccccccccc
Q 042802 145 DLAFNKLVGSFPDELCHLARLAEFVILGN-KPSG-SIPSCLSNLTSLRSLYLGSN-SLKDILFFDFSSNFLVGPLSLDIG 221 (424)
Q Consensus 145 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~-~~~~~l~~l~~L~~L~l~~n-~l~~i~~l~l~~n~~~~~~~~~l~ 221 (424)
++++|.+.+..+..+..+++|++|++++| .+++ .++..+..+++|+.|++++| .+++. .++..+.
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------~~~~~~~ 191 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------------HVQVAVA 191 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH------------HHHHHHH
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH------------HHHHHHH
Confidence 99888887777788888888999999888 5654 25556777888888888888 76541 1344566
Q ss_pred ccC-cccEEECccC--ccc-ccCchhhccCcCccEeeccCcc-ccccchhhhcCCCCCCEEECcCCC-CCCCCcccccCC
Q 042802 222 NLK-VLVRINLSKN--NLS-GDIPATIVGLKDLQFMDLAYNR-SEGPIPELFGDLTSLEVLNLSKNK-ISGPIPTSMEKL 295 (424)
Q Consensus 222 ~l~-~L~~L~l~~n--~l~-~~~p~~~~~l~~L~~L~ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l 295 (424)
.++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 271 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence 778 8889999888 454 4566777788889999998888 676777778888889999998885 322222357778
Q ss_pred CCCCEEEcccc
Q 042802 296 VYLRELNLSFN 306 (424)
Q Consensus 296 ~~L~~L~l~~n 306 (424)
++|+.|++++|
T Consensus 272 ~~L~~L~l~~~ 282 (336)
T 2ast_B 272 PTLKTLQVFGI 282 (336)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEeccCc
Confidence 88999998888
No 86
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=5e-25 Score=221.95 Aligned_cols=316 Identities=13% Similarity=0.090 Sum_probs=136.8
Q ss_pred cCCCCCEEeccCCccccc----CccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhH
Q 042802 11 NASKLTVLELGGNTFSGF----IPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSI 86 (424)
Q Consensus 11 ~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 86 (424)
.+++|++|++++|.+++. ++..+..+++|++|++++|.+++... ..+...+.++++|+.|++++|.+.+ ++..+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~ 239 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP-KDLETIARNCRSLVSVKVGDFEILE-LVGFF 239 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH-HHHHHHHHHCTTCCEEECSSCBGGG-GHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH-HHHHHHHhhCCCCcEEeccCccHHH-HHHHH
Confidence 445555555555554433 12222344555555555555442210 0011223344555555555555542 44444
Q ss_pred HhcccccceeEeecCcCc---ccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCC-hhhcCC
Q 042802 87 GNLSMSLKTLIIANCSII---GNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP-DELCHL 162 (424)
Q Consensus 87 ~~l~~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l 162 (424)
..++ +|++|+++.+... ...+..+..+++|+.|+++++... .+|..+..+++|++|++++|.+.+... ..+..+
T Consensus 240 ~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~ 317 (592)
T 3ogk_B 240 KAAA-NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC 317 (592)
T ss_dssp HHCT-TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTC
T ss_pred hhhh-HHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhC
Confidence 4442 5555555432111 111122233333444433332221 334444445555555555555432221 223445
Q ss_pred cccceEeccCCcCccCCCccCCCCCCCCEEEccC-----------CCCC------------CceeeeccCCccccccccc
Q 042802 163 ARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGS-----------NSLK------------DILFFDFSSNFLVGPLSLD 219 (424)
Q Consensus 163 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-----------n~l~------------~i~~l~l~~n~~~~~~~~~ 219 (424)
++|+.|+++++-..+.++.....+++|+.|++++ |.++ .++.+++..+.+++..+..
T Consensus 318 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~ 397 (592)
T 3ogk_B 318 PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397 (592)
T ss_dssp TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred cCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence 5555555542211112222223445555555552 2222 1244444444444443333
Q ss_pred ccc-cCcccEEECc----cCccccc-----CchhhccCcCccEeeccCcc--ccccchhhhc-CCCCCCEEECcCCCCCC
Q 042802 220 IGN-LKVLVRINLS----KNNLSGD-----IPATIVGLKDLQFMDLAYNR--SEGPIPELFG-DLTSLEVLNLSKNKISG 286 (424)
Q Consensus 220 l~~-l~~L~~L~l~----~n~l~~~-----~p~~~~~l~~L~~L~ls~n~--l~~~~~~~l~-~l~~L~~L~L~~n~l~~ 286 (424)
+.. +++|+.|+++ .|.+++. ++..+..+++|+.|++++|. +++..+..+. .+++|++|++++|.+++
T Consensus 398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence 333 5555555554 3344421 22234445555555554322 3333333332 25556666666666554
Q ss_pred C-CcccccCCCCCCEEEcccccCccc-CCCC-CcccccccccccCCc
Q 042802 287 P-IPTSMEKLVYLRELNLSFNKLEGE-IPSG-GIFTSFIAESFMGNE 330 (424)
Q Consensus 287 ~-~~~~l~~l~~L~~L~l~~n~l~~~-~p~~-~~~~~l~~~~~~~n~ 330 (424)
. ++..+..+++|++|++++|++++. ++.. ..+++++.+++.+|.
T Consensus 478 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 2 233345556666666666665432 1111 234455555665555
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=8.1e-23 Score=188.79 Aligned_cols=229 Identities=17% Similarity=0.167 Sum_probs=168.0
Q ss_pred CCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhH--HhcccccceeEeecCcCcccch----hh
Q 042802 37 RNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSI--GNLSMSLKTLIIANCSIIGNIR----RA 110 (424)
Q Consensus 37 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~~L~~L~l~~n~l~~~~~----~~ 110 (424)
..++.+.+.++.++... ......+..+++|+.|++++|.+.+..|..+ ..+ .+|++|++++|.+.+..+ ..
T Consensus 64 ~~l~~l~l~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQL--LVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATG-LALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp CCCCEEEECSCCCBHHH--HHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCC-BCCSSCEEESCCCSSTTSSHHHHH
T ss_pred cceeEEEEeCCcCCHHH--HHHHHHhcccCceeEEEeeCCEeccchhhhhhhccC-CCCCEEEeecccccchhhhhHHHH
Confidence 45777888777665320 0000112234668889999998888888776 666 489999999988876543 34
Q ss_pred hcCCcccceeecccCccccccCcccCCCCCCCeEEccCCccccc--C--ChhhcCCcccceEeccCCcCccCCC--c-cC
Q 042802 111 IGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGS--F--PDELCHLARLAEFVILGNKPSGSIP--S-CL 183 (424)
Q Consensus 111 l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~~--~-~l 183 (424)
+..+++|++|++++|.+.+..+..++.+++|++|++++|++.+. + +..+..+++|++|++++|.++...+ . .+
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 55788899999999998877778888899999999999887542 2 2234678889999999988863211 1 24
Q ss_pred CCCCCCCEEEccCCCCCCceeeeccCCccccccccccccc---CcccEEECccCcccccCchhhccCcCccEeeccCccc
Q 042802 184 SNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNL---KVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRS 260 (424)
Q Consensus 184 ~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l---~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l 260 (424)
..+++|+.|++++|.++++ .|..+..+ ++|++|++++|.++ .+|..+. ++|+.|++++|++
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~-------------~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l 284 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRAT-------------VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRL 284 (310)
T ss_dssp HHTCCCSSEECTTSCCCCC-------------CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCC
T ss_pred hcCCCCCEEECCCCCCCcc-------------chhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcC
Confidence 6678888888888887763 35445554 68999999999998 6677664 7999999999999
Q ss_pred cccchhhhcCCCCCCEEECcCCCCCC
Q 042802 261 EGPIPELFGDLTSLEVLNLSKNKISG 286 (424)
Q Consensus 261 ~~~~~~~l~~l~~L~~L~L~~n~l~~ 286 (424)
++. |. +..+++|+.|++++|+++.
T Consensus 285 ~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 285 NRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCC-ch-hhhCCCccEEECcCCCCCC
Confidence 864 33 6788999999999999874
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=5.3e-24 Score=201.08 Aligned_cols=257 Identities=16% Similarity=0.169 Sum_probs=172.7
Q ss_pred EEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCC----hhHHhcccccceeEeecCcCcccchhhhcCC--
Q 042802 41 WLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLP----SSIGNLSMSLKTLIIANCSIIGNIRRAIGNL-- 114 (424)
Q Consensus 41 ~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l-- 114 (424)
.+++++|.+++... ..+...++|+.|++++|.+++..+ +.+..++.+|++|++++|.+....+..+..+
T Consensus 2 ~~~ls~n~~~~~~~-----~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 2 NYKLTLHPGSNPVE-----EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76 (362)
T ss_dssp EEECCCCTTCCHHH-----HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred ccccccccchHHHH-----HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence 35677787776521 344555568888998888886655 5666663378888888888877777666664
Q ss_pred ---cccceeecccCccccccCcc----cCCC-CCCCeEEccCCcccccCChhh----cC-CcccceEeccCCcCccCCC-
Q 042802 115 ---SNLLALTLEGNKLTGPIPIT----FGRL-QKLQGLDLAFNKLVGSFPDEL----CH-LARLAEFVILGNKPSGSIP- 180 (424)
Q Consensus 115 ---~~L~~L~l~~n~l~~~~p~~----~~~l-~~L~~L~L~~n~~~~~~~~~l----~~-l~~L~~L~l~~n~~~~~~~- 180 (424)
++|++|++++|.+++..+.. +..+ ++|++|++++|++.+..+..+ .. .++|++|++++|.+.....
T Consensus 77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 88888888888888655553 3344 788888888888876555443 33 2588888888888774332
Q ss_pred ---ccCCCCC-CCCEEEccCCCCCCceeeeccCCccccccccccccc-CcccEEECccCccccc----Cchhhcc-CcCc
Q 042802 181 ---SCLSNLT-SLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNL-KVLVRINLSKNNLSGD----IPATIVG-LKDL 250 (424)
Q Consensus 181 ---~~l~~l~-~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~----~p~~~~~-l~~L 250 (424)
..+..++ +|+.|++++|.+++... ..+...+..+ ++|++|++++|.+++. ++..+.. .++|
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~---------~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNC---------AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCH---------HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhH---------HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence 2334444 78888888877654200 0011233444 4788888888888753 3444544 3588
Q ss_pred cEeeccCccccccch----hhhcCCCCCCEEECcCCCCCCCC-------cccccCCCCCCEEEcccccCccc
Q 042802 251 QFMDLAYNRSEGPIP----ELFGDLTSLEVLNLSKNKISGPI-------PTSMEKLVYLRELNLSFNKLEGE 311 (424)
Q Consensus 251 ~~L~ls~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~-------~~~l~~l~~L~~L~l~~n~l~~~ 311 (424)
++|++++|.+++..+ ..+..+++|+.|++++|.+.+.. +..+..+++|+.||+++|++...
T Consensus 228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 888888888876544 33466788888888888754332 23456777788888888887654
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.4e-22 Score=185.28 Aligned_cols=189 Identities=22% Similarity=0.314 Sum_probs=87.0
Q ss_pred ccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEecc
Q 042802 92 SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171 (424)
Q Consensus 92 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 171 (424)
+|++|++++|.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+ + ..+..+++|+.|+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECC
Confidence 44444444444432 12 344444444444444444422 22 4444444444444444432 1 134444444444444
Q ss_pred CCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCcc
Q 042802 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQ 251 (424)
Q Consensus 172 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 251 (424)
+|.+.+.. .+..+++|+.|++++|.++++ +. +..+++|++|++++|.+++. +. +..+++|+
T Consensus 116 ~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~--------------~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~ 176 (308)
T 1h6u_A 116 STQITDVT--PLAGLSNLQVLYLDLNQITNI--------------SP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLT 176 (308)
T ss_dssp TSCCCCCG--GGTTCTTCCEEECCSSCCCCC--------------GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCC
T ss_pred CCCCCCch--hhcCCCCCCEEECCCCccCcC--------------cc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCC
Confidence 44444321 144445555555555544431 11 44445555555555555432 22 44555555
Q ss_pred EeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCc
Q 042802 252 FMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLE 309 (424)
Q Consensus 252 ~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 309 (424)
.|++++|.+++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|+++
T Consensus 177 ~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred EEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 55555555553322 445555555555555555333 2455555555555555554
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=6.7e-22 Score=182.29 Aligned_cols=197 Identities=22% Similarity=0.360 Sum_probs=169.3
Q ss_pred cccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCC
Q 042802 61 SLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQK 140 (424)
Q Consensus 61 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 140 (424)
.+..+++|+.|++++|.++ .++ .+..+ ++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~-~l~-~~~~l-~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~ 108 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVT-TIE-GVQYL-NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQS 108 (308)
T ss_dssp CHHHHHTCCEEECTTSCCC-CCT-TGGGC-TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTT
T ss_pred cHHHcCCcCEEEeeCCCcc-Cch-hhhcc-CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCC
Confidence 4567889999999999998 455 57777 499999999999976544 8999999999999999985 43 6899999
Q ss_pred CCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccc
Q 042802 141 LQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDI 220 (424)
Q Consensus 141 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l 220 (424)
|++|++++|++.+. + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++++ +. +
T Consensus 109 L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--------------~~-l 169 (308)
T 1h6u_A 109 IKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL--------------TP-L 169 (308)
T ss_dssp CCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--------------GG-G
T ss_pred CCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC--------------hh-h
Confidence 99999999999853 3 38999999999999999986544 88899999999999988763 32 7
Q ss_pred cccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCC
Q 042802 221 GNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGP 287 (424)
Q Consensus 221 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 287 (424)
..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++.
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 789999999999999985443 8899999999999999996553 88999999999999999853
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=8.3e-22 Score=176.27 Aligned_cols=179 Identities=25% Similarity=0.271 Sum_probs=112.1
Q ss_pred cceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccC
Q 042802 93 LKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILG 172 (424)
Q Consensus 93 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 172 (424)
.++++++++.+. .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 444455544443 2333222 3455555555555544444555555555555555555544444555555555555555
Q ss_pred CcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccE
Q 042802 173 NKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQF 252 (424)
Q Consensus 173 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 252 (424)
|.+.+..+..+..+++|+.|++++|.++.+ .+..+..+++|++|++++|.+++..+..|..+++|++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSL-------------PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCc-------------ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence 555555555566666666666666665542 2334566777777777777777666667778888888
Q ss_pred eeccCccccccchhhhcCCCCCCEEECcCCCCCCC
Q 042802 253 MDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGP 287 (424)
Q Consensus 253 L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 287 (424)
|++++|++++..+..+..+++|++|++++|++.+.
T Consensus 160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 88888888877777788888888888888888765
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=7.2e-24 Score=213.49 Aligned_cols=290 Identities=13% Similarity=0.033 Sum_probs=170.5
Q ss_pred CchhhhcCCCCCEEeccCCccc----ccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeecc------
Q 042802 5 IPSSITNASKLTVLELGGNTFS----GFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLI------ 74 (424)
Q Consensus 5 lp~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~------ 74 (424)
++..+..+++|++|++++|.++ +.++..+.++++|++|++++|.+.+++ ..+..+++|+.|+++
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~------~~~~~~~~L~~L~l~~~~~~~ 257 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV------GFFKAAANLEEFCGGSLNEDI 257 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH------HHHHHCTTCCEEEECBCCCCT
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH------HHHhhhhHHHhhccccccccc
Confidence 4445567788888888888776 233444567788888888888776644 344445555555554
Q ss_pred ---------------------CccCCccCChhHHhcccccceeEeecCcCcccch-hhhcCCcccceeecccCccccccC
Q 042802 75 ---------------------GNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIR-RAIGNLSNLLALTLEGNKLTGPIP 132 (424)
Q Consensus 75 ---------------------~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p 132 (424)
++.. ..+|..+..+ ++|++|++++|.+..... ..+..+++|++|+++++.....++
T Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~-~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~ 335 (592)
T 3ogk_B 258 GMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFA-AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLE 335 (592)
T ss_dssp TCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGG-GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHH
T ss_pred chHHHHHHhhccccccccCccccch-hHHHHHHhhc-CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHH
Confidence 3321 1334444444 255555555555433222 223455555555555221111222
Q ss_pred cccCCCCCCCeEEccC-----------Cccccc-CChhhcCCcccceEeccCCcCccCCCccCCC-CCCCCEEEccCCCC
Q 042802 133 ITFGRLQKLQGLDLAF-----------NKLVGS-FPDELCHLARLAEFVILGNKPSGSIPSCLSN-LTSLRSLYLGSNSL 199 (424)
Q Consensus 133 ~~~~~l~~L~~L~L~~-----------n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~~n~l 199 (424)
.....+++|++|++++ +.++.. ++.....+++|++|++..+.+++..+..+.. +++|+.|+++.+.
T Consensus 336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~- 414 (592)
T 3ogk_B 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD- 414 (592)
T ss_dssp HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS-
T ss_pred HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC-
Confidence 2233455555555552 333321 1112233555555555555554433333332 5555555554111
Q ss_pred CCceeeeccCCccccc-----ccccccccCcccEEECccCc--ccccCchhhc-cCcCccEeeccCccccc-cchhhhcC
Q 042802 200 KDILFFDFSSNFLVGP-----LSLDIGNLKVLVRINLSKNN--LSGDIPATIV-GLKDLQFMDLAYNRSEG-PIPELFGD 270 (424)
Q Consensus 200 ~~i~~l~l~~n~~~~~-----~~~~l~~l~~L~~L~l~~n~--l~~~~p~~~~-~l~~L~~L~ls~n~l~~-~~~~~l~~ 270 (424)
..|.+++. ++..+.++++|++|++++|. +++..+..+. .+++|+.|++++|++++ .++..+..
T Consensus 415 --------~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 486 (592)
T 3ogk_B 415 --------REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG 486 (592)
T ss_dssp --------CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTC
T ss_pred --------CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhc
Confidence 12333331 33346678999999997543 6655555554 48999999999999986 34556688
Q ss_pred CCCCCEEECcCCCCCCC-CcccccCCCCCCEEEcccccCccc
Q 042802 271 LTSLEVLNLSKNKISGP-IPTSMEKLVYLRELNLSFNKLEGE 311 (424)
Q Consensus 271 l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~ 311 (424)
+++|++|++++|.+++. ++..+..+++|++|++++|+++..
T Consensus 487 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 487 CPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 99999999999998754 344556789999999999998754
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=7.2e-21 Score=178.70 Aligned_cols=123 Identities=18% Similarity=0.144 Sum_probs=60.3
Q ss_pred CEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCCh-hHHhcccccc
Q 042802 16 TVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPS-SIGNLSMSLK 94 (424)
Q Consensus 16 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~~L~ 94 (424)
++++.++++++ .+|..+ .+++++|+|++|+++.+|. .+|.++++|++|+|++|.+.+.+|. .|..++ ++.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~-----~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~-~l~ 82 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQK-----GAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLH 82 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECT-----TSSTTCTTCCEEEEECCTTCCEECTTSBCSCT-TCC
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCH-----HHHcCCCCCCEEECcCCCCCCccChhHhhcch-hhh
Confidence 44555555555 344433 2455666666666655542 3455556666666666655444432 233332 333
Q ss_pred -eeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEcc
Q 042802 95 -TLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLA 147 (424)
Q Consensus 95 -~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 147 (424)
.+.+..|++....|..|..+++|++|++++|.+....+..+....++..+++.
T Consensus 83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp EEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEE
T ss_pred hhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhc
Confidence 23344455544445555555555555555555553333333344444444443
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=7.8e-21 Score=178.48 Aligned_cols=240 Identities=19% Similarity=0.173 Sum_probs=147.3
Q ss_pred CEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccch-hhhcCCcccc
Q 042802 40 EWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIR-RAIGNLSNLL 118 (424)
Q Consensus 40 ~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~ 118 (424)
++++.++++++.+|. .+ .++++.|+|++|.++...+..|..++ +|++|+|++|.+.+.++ .+|.++++++
T Consensus 12 ~~v~C~~~~Lt~iP~------~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 12 RVFLCQESKVTEIPS------DL--PRNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp TEEEEESTTCCSCCT------TC--CTTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred CEEEecCCCCCccCc------Cc--CCCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhh
Confidence 567777778877773 23 25677788888877743344566663 78888888777755444 4567777765
Q ss_pred e-eecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccC-CcCccCCCccCCCCC-CCCEEEcc
Q 042802 119 A-LTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILG-NKPSGSIPSCLSNLT-SLRSLYLG 195 (424)
Q Consensus 119 ~-L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~l~ 195 (424)
+ +.+.+|+++...|..|..+++|++|++++|++....+..+....++..+++.+ +.+....+..+..+. .++.|+++
T Consensus 83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp EEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred hhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 4 45556777766667777777788888877777755555555666666776654 344444444555543 46666666
Q ss_pred CCCCCCceeeeccCCcccccccccccccCcccEEECcc-CcccccCchhhccCcCccEeeccCccccccchhhhcCCCCC
Q 042802 196 SNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSK-NNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSL 274 (424)
Q Consensus 196 ~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L 274 (424)
+|.++. ++.......+|+.+++.+ |.++...+..|..+++|+.|++++|+++...+. .+.+|
T Consensus 163 ~N~i~~--------------i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L 225 (350)
T 4ay9_X 163 KNGIQE--------------IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENL 225 (350)
T ss_dssp SSCCCE--------------ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTC
T ss_pred cccccC--------------CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccc
Confidence 666654 233333445667777764 444433334566777777777777777643222 24455
Q ss_pred CEEECcCCCCCCCCcccccCCCCCCEEEcccc
Q 042802 275 EVLNLSKNKISGPIPTSMEKLVYLRELNLSFN 306 (424)
Q Consensus 275 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 306 (424)
+.|.+.++.-...+| .+..+++|+.++++++
T Consensus 226 ~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 226 KKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 566555543333444 3566667777776654
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.1e-20 Score=164.05 Aligned_cols=130 Identities=22% Similarity=0.274 Sum_probs=53.8
Q ss_pred cCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEc
Q 042802 67 KLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDL 146 (424)
Q Consensus 67 ~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 146 (424)
+|+.|++++|.+++..+..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDEL-TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhccc-ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34444444444442222223333 24444444444443333333444444444444444444333333444444444444
Q ss_pred cCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCC
Q 042802 147 AFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSN 197 (424)
Q Consensus 147 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 197 (424)
++|++.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 444444333333444444444444444444333333444444444444444
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.1e-20 Score=163.89 Aligned_cols=180 Identities=22% Similarity=0.232 Sum_probs=115.9
Q ss_pred ceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccC
Q 042802 69 RNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAF 148 (424)
Q Consensus 69 ~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~ 148 (424)
+.++.+++.++ .+|..+ +.+|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 35556666555 444333 24677888888877766666677777888888887777755555567777777777777
Q ss_pred CcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccE
Q 042802 149 NKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVR 228 (424)
Q Consensus 149 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~ 228 (424)
|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++++ .+..+..+++|++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-------------~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-------------PDGVFDRLTSLQY 152 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-------------CTTTTTTCTTCCE
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-------------CHHHhccCCCccE
Confidence 777755555566777777777777777766555566677777777666665542 2233555666666
Q ss_pred EECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCC
Q 042802 229 INLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLT 272 (424)
Q Consensus 229 L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~ 272 (424)
|++++|.+.+ .++.|+.|+++.|.++|.+|..++.++
T Consensus 153 L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 153 IWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp EECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred EEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 6666665542 344566666666666666665555443
No 97
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=5.6e-23 Score=207.06 Aligned_cols=192 Identities=16% Similarity=0.143 Sum_probs=93.6
Q ss_pred CCCCCCeEEccCCcccccC-ChhhcCCcccceEeccCCcCc-cCCCccCCCCCCCCEEEccC---------CCC------
Q 042802 137 RLQKLQGLDLAFNKLVGSF-PDELCHLARLAEFVILGNKPS-GSIPSCLSNLTSLRSLYLGS---------NSL------ 199 (424)
Q Consensus 137 ~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~---------n~l------ 199 (424)
.+++|++|++++|.+.+.. ...+..+++|+.|++++| +. ..++.....+++|+.|++.. +.+
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 3455666666666544221 122345566666666555 22 11111122355666666522 121
Q ss_pred ------CCceeeeccCCccccccccccc-ccCcccEEECc--c----Ccccc-----cCchhhccCcCccEeeccCcccc
Q 042802 200 ------KDILFFDFSSNFLVGPLSLDIG-NLKVLVRINLS--K----NNLSG-----DIPATIVGLKDLQFMDLAYNRSE 261 (424)
Q Consensus 200 ------~~i~~l~l~~n~~~~~~~~~l~-~l~~L~~L~l~--~----n~l~~-----~~p~~~~~l~~L~~L~ls~n~l~ 261 (424)
..++.+.+..+.+.+.....+. .+++|+.|+++ + +.+++ .++..+..+++|+.|++++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 1234444444444443333332 35666666666 2 33331 1122244556666666655 444
Q ss_pred ccchhhhcC-CCCCCEEECcCCCCCCCCcccc-cCCCCCCEEEcccccCcccCC--CCCcccccccccccCCc
Q 042802 262 GPIPELFGD-LTSLEVLNLSKNKISGPIPTSM-EKLVYLRELNLSFNKLEGEIP--SGGIFTSFIAESFMGNE 330 (424)
Q Consensus 262 ~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~p--~~~~~~~l~~~~~~~n~ 330 (424)
+..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|++++... ....+++++.+++.+|+
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 444444443 5667777777776654433333 456677777777776643221 11234556666666655
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=2.4e-20 Score=184.41 Aligned_cols=189 Identities=21% Similarity=0.243 Sum_probs=118.0
Q ss_pred CCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCccc
Q 042802 38 NHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNL 117 (424)
Q Consensus 38 ~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L 117 (424)
+|+.|++++|.++++|. .+ .++|+.|++++|.++ .+| ..+ .+|++|++++|.+++ +|. +.. +|
T Consensus 60 ~L~~L~Ls~n~L~~lp~------~l--~~~L~~L~Ls~N~l~-~ip---~~l-~~L~~L~Ls~N~l~~-ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPD------NL--PPQITVLEITQNALI-SLP---ELP-ASLEYLDACDNRLST-LPE-LPA--SL 122 (571)
T ss_dssp TCSEEECCSSCCSCCCS------CC--CTTCSEEECCSSCCS-CCC---CCC-TTCCEEECCSSCCSC-CCC-CCT--TC
T ss_pred CccEEEeCCCCCCccCH------hH--cCCCCEEECcCCCCc-ccc---ccc-CCCCEEEccCCCCCC-cch-hhc--CC
Confidence 66666666666666552 22 255666666666666 455 223 466667776666654 444 443 67
Q ss_pred ceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCC
Q 042802 118 LALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSN 197 (424)
Q Consensus 118 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 197 (424)
++|++++|.+++ +|. .+++|+.|++++|.+.+ +|. .+++|+.|++++|.+++ +|. +. ++|+.|++++|
T Consensus 123 ~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 123 KHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS
T ss_pred CEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC
Confidence 777777777664 444 46667777777777664 443 45667777777777665 444 44 67777777777
Q ss_pred CCCCceeeeccCCcccccccccccc-----cCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCC
Q 042802 198 SLKDILFFDFSSNFLVGPLSLDIGN-----LKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDL 271 (424)
Q Consensus 198 ~l~~i~~l~l~~n~~~~~~~~~l~~-----l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l 271 (424)
.++.+ |. +.. .+.|+.|++++|.++ .+|..+..+++|+.|++++|.+++.+|..+..+
T Consensus 191 ~L~~l--------------p~-~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 191 LLESL--------------PA-VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCSSC--------------CC-CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCCch--------------hh-HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 66652 22 221 122377888888877 567766678888888888888877777666554
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.1e-19 Score=179.81 Aligned_cols=187 Identities=25% Similarity=0.285 Sum_probs=125.0
Q ss_pred cCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEc
Q 042802 67 KLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDL 146 (424)
Q Consensus 67 ~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 146 (424)
+|+.|++++|.+++ +|..+. ++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 67777777777774 665442 36777777777775 445 446777777777777775 555 544 7777777
Q ss_pred cCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcc
Q 042802 147 AFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVL 226 (424)
Q Consensus 147 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L 226 (424)
++|.+.+ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~--------------lp~-l~--~~L 182 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF--------------LPE-LP--ESL 182 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC--------------CCC-CC--TTC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC--------------cch-hh--CCC
Confidence 7777775 444 56777777777777775 443 45677777777777665 333 33 677
Q ss_pred cEEECccCcccccCchhhccCcCc-------cEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCC
Q 042802 227 VRINLSKNNLSGDIPATIVGLKDL-------QFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKL 295 (424)
Q Consensus 227 ~~L~l~~n~l~~~~p~~~~~l~~L-------~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 295 (424)
+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus 183 ~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 183 EALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 77777777777 5555 443 55 77777777777 456666667777777777777777766665543
No 100
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=6.9e-22 Score=199.09 Aligned_cols=196 Identities=16% Similarity=0.101 Sum_probs=135.5
Q ss_pred cCCcccceeecccCcccccc-CcccCCCCCCCeEEccCCcccc-cCChhhcCCcccceEeccC---------CcCccCCC
Q 042802 112 GNLSNLLALTLEGNKLTGPI-PITFGRLQKLQGLDLAFNKLVG-SFPDELCHLARLAEFVILG---------NKPSGSIP 180 (424)
Q Consensus 112 ~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~---------n~~~~~~~ 180 (424)
..+++|++|++++|.+++.. +..+..+++|++|++++| +.. .++.....+++|+.|++.+ +.+++...
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 35678888899888876432 223567899999999988 332 2233334578899998843 23332211
Q ss_pred ccC-CCCCCCCEEEccCCCCCC------------ceeeecc--C----Ccccc-----cccccccccCcccEEECccCcc
Q 042802 181 SCL-SNLTSLRSLYLGSNSLKD------------ILFFDFS--S----NFLVG-----PLSLDIGNLKVLVRINLSKNNL 236 (424)
Q Consensus 181 ~~l-~~l~~L~~L~l~~n~l~~------------i~~l~l~--~----n~~~~-----~~~~~l~~l~~L~~L~l~~n~l 236 (424)
..+ ..+++|+.|.+..|.++. ++.++++ + +.+++ .++..+..+++|+.|++++ .+
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l 443 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LL 443 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SC
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cc
Confidence 112 237888888777766543 4677776 2 33332 1222366789999999988 67
Q ss_pred cccCchhhcc-CcCccEeeccCccccccchhhh-cCCCCCCEEECcCCCCCCCCcc-cccCCCCCCEEEcccccCc
Q 042802 237 SGDIPATIVG-LKDLQFMDLAYNRSEGPIPELF-GDLTSLEVLNLSKNKISGPIPT-SMEKLVYLRELNLSFNKLE 309 (424)
Q Consensus 237 ~~~~p~~~~~-l~~L~~L~ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~ 309 (424)
++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|.+++.... ....+++|+.|++++|+++
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 6665666655 8999999999999987666555 6689999999999999654433 4456899999999999884
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=5.1e-20 Score=161.03 Aligned_cols=156 Identities=23% Similarity=0.205 Sum_probs=93.2
Q ss_pred ceeecccCccccccCcccCCCCCCCeEEccCCcccccCC-hhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccC
Q 042802 118 LALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFP-DELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGS 196 (424)
Q Consensus 118 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 196 (424)
+++++++|.++ .+|..+. ..+++|++++|++.+..+ ..|..+++|+.|++++|.+.+..+.
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~--------------- 75 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG--------------- 75 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT---------------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH---------------
Confidence 45666666666 3454432 234566666666554422 2344445555555554444443333
Q ss_pred CCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCE
Q 042802 197 NSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEV 276 (424)
Q Consensus 197 n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 276 (424)
.+.++++|++|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++
T Consensus 76 ----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 133 (220)
T 2v70_A 76 ----------------------AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133 (220)
T ss_dssp ----------------------TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred ----------------------HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence 4445555555556666665555555666666777777777766666666667777777
Q ss_pred EECcCCCCCCCCcccccCCCCCCEEEcccccCcccCC
Q 042802 277 LNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIP 313 (424)
Q Consensus 277 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 313 (424)
|+|++|++++..|..+..+++|+.|++++|++.+..+
T Consensus 134 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 134 LSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp EECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred EECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 7777777776666667777777777777777766544
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=8.3e-20 Score=159.67 Aligned_cols=153 Identities=24% Similarity=0.286 Sum_probs=84.2
Q ss_pred ceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCC
Q 042802 118 LALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSN 197 (424)
Q Consensus 118 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 197 (424)
+.++++++.++ .+|..+. ++|+.|++++|++.+..+..|..+++|+.|++++|.+.+..|..|..+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666777666 4555443 56667777777666555555666666666666666666555555555555555555555
Q ss_pred CCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEE
Q 042802 198 SLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVL 277 (424)
Q Consensus 198 ~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 277 (424)
.++. ..+..|..+++|++|++++|++++..|..|..+++|++|
T Consensus 91 ~l~~-------------------------------------l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 133 (220)
T 2v9t_B 91 KITE-------------------------------------LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133 (220)
T ss_dssp CCCC-------------------------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCc-------------------------------------cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE
Confidence 5443 333334444455555555555544444445555555555
Q ss_pred ECcCCCCCCCCcccccCCCCCCEEEcccccCcc
Q 042802 278 NLSKNKISGPIPTSMEKLVYLRELNLSFNKLEG 310 (424)
Q Consensus 278 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 310 (424)
+|++|.+++..+..+..+++|+.|++++|++.+
T Consensus 134 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 555555554444445555555555555555543
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.7e-19 Score=163.36 Aligned_cols=168 Identities=32% Similarity=0.383 Sum_probs=92.0
Q ss_pred ccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEecc
Q 042802 92 SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171 (424)
Q Consensus 92 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 171 (424)
+|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+ ++
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~--------------- 106 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS--------------- 106 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG---------------
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch---------------
Confidence 555555555555332 2 24555555555555555553222 5555555555555555442 11
Q ss_pred CCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCcc
Q 042802 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQ 251 (424)
Q Consensus 172 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 251 (424)
.+..+++|+.|++++|.++++ ..+..+++|+.|++++|.+++. ..+..+++|+
T Consensus 107 ----------~l~~l~~L~~L~L~~n~i~~~---------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 159 (291)
T 1h6t_A 107 ----------SLKDLKKLKSLSLEHNGISDI---------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 159 (291)
T ss_dssp ----------GGTTCTTCCEEECTTSCCCCC---------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred ----------hhccCCCCCEEECCCCcCCCC---------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence 244555555555555554431 1244555666666666666533 3455666666
Q ss_pred EeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcc
Q 042802 252 FMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEG 310 (424)
Q Consensus 252 ~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 310 (424)
.|++++|++++..+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred EEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 66666666664433 66666666666666666642 2 35666666666666666653
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.7e-19 Score=170.01 Aligned_cols=177 Identities=21% Similarity=0.159 Sum_probs=103.2
Q ss_pred cceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccC-CCCCCCeEEccCCcccccCChhhcCCcccceEecc
Q 042802 93 LKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFG-RLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171 (424)
Q Consensus 93 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 171 (424)
-+.++++++.+. .+|..+. +.++.|++++|.+++..+..+. .+++|++|+|++|++.+..+..|..+++|+.|+++
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 456677777664 3454332 3467777777777765555565 67777777777777765555666666667777776
Q ss_pred CCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhh---ccCc
Q 042802 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATI---VGLK 248 (424)
Q Consensus 172 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~---~~l~ 248 (424)
+|.+....+..|..+++|+.|++++|.++.+ .+..+..+++|+.|+|++|.+++..+..| ..++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-------------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~ 163 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVV-------------DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEE-------------CTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CT
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEE-------------CHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCC
Confidence 6666655555566666666666666655432 23445555666666666666653333333 3455
Q ss_pred CccEeeccCccccccchhhhcCCCC--CCEEECcCCCCC
Q 042802 249 DLQFMDLAYNRSEGPIPELFGDLTS--LEVLNLSKNKIS 285 (424)
Q Consensus 249 ~L~~L~ls~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~ 285 (424)
+|+.|+|++|++++..+..+..++. ++.|+|++|++.
T Consensus 164 ~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 5555555555555444444444444 245555555554
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1.4e-19 Score=165.26 Aligned_cols=147 Identities=25% Similarity=0.380 Sum_probs=68.2
Q ss_pred CCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCC
Q 042802 35 NLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNL 114 (424)
Q Consensus 35 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l 114 (424)
.+++|++|++++|.++.++ .+..+++|+.|++++|.+++. +. +..+ ++|++|++++|.+.+ + ..+..+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-------~~~~l~~L~~L~L~~n~l~~~-~~-l~~l-~~L~~L~l~~n~l~~-~-~~l~~l 111 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-------GIQYLPNVTKLFLNGNKLTDI-KP-LANL-KNLGWLFLDENKVKD-L-SSLKDL 111 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCCC-GG-GTTC-TTCCEEECCSSCCCC-G-GGGTTC
T ss_pred hcCcccEEEccCCCcccCh-------hHhcCCCCCEEEccCCccCCC-cc-cccC-CCCCEEECCCCcCCC-C-hhhccC
Confidence 4455555555555555442 244455555555555555532 22 4444 255555555555433 1 224455
Q ss_pred cccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEc
Q 042802 115 SNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYL 194 (424)
Q Consensus 115 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 194 (424)
++|++|++++|.+++. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 112 ~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence 5555555555555431 2344455555555555554432 234444444444444444443322 344444444444
Q ss_pred cCCCC
Q 042802 195 GSNSL 199 (424)
Q Consensus 195 ~~n~l 199 (424)
++|.+
T Consensus 186 ~~N~i 190 (291)
T 1h6t_A 186 SKNHI 190 (291)
T ss_dssp CSSCC
T ss_pred CCCcC
Confidence 44443
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=2.8e-19 Score=178.65 Aligned_cols=192 Identities=30% Similarity=0.367 Sum_probs=114.1
Q ss_pred ccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEE
Q 042802 66 KKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLD 145 (424)
Q Consensus 66 ~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 145 (424)
..+..+.+..+.+....+ +..+ .+|++|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L-~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHH-TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHhccCCCcccccc--hhcC-CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 344555566665554333 3444 3677777777766432 2 46667777777777777764333 66677777777
Q ss_pred ccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCc
Q 042802 146 LAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKV 225 (424)
Q Consensus 146 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~ 225 (424)
|++|.+.+ ++ .+..+++|+.|++++|.+.+. +.+..+++|+.|++++|.++++ ..+..+++
T Consensus 94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l---------------~~l~~l~~ 154 (605)
T 1m9s_A 94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---------------TVLSRLTK 154 (605)
T ss_dssp CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC---------------GGGGSCTT
T ss_pred CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc---------------hhhcccCC
Confidence 77776653 22 466666666666666666542 3455666666666666665541 23455666
Q ss_pred ccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCC
Q 042802 226 LVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGP 287 (424)
Q Consensus 226 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 287 (424)
|+.|+|++|.+++..| +..+++|+.|+|++|.+++. + .+..+++|+.|+|++|++.+.
T Consensus 155 L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 155 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred CCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 6666666666664444 55666666666666666543 2 355666666666666666543
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=9.5e-19 Score=152.93 Aligned_cols=154 Identities=23% Similarity=0.303 Sum_probs=114.3
Q ss_pred ccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEecc
Q 042802 92 SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171 (424)
Q Consensus 92 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 171 (424)
.-+.++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|+.|+|++|++.+..|..|..+++|++|+++
T Consensus 12 ~~~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 12 SNNIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp ETTEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CCCEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 3467889988885 4565543 689999999999997777789999999999999999998889999999999999999
Q ss_pred CCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCcc
Q 042802 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQ 251 (424)
Q Consensus 172 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 251 (424)
+|.+....+..|..+++|+.|++++|.++.+ .+..+..++ +|+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~------------------------~L~ 131 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCL-------------RVDAFQDLH------------------------NLN 131 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCT------------------------TCC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEe-------------CHHHcCCCC------------------------CCC
Confidence 9999977766677777777777777766542 233444444 445
Q ss_pred EeeccCccccccchhhhcCCCCCCEEECcCCCCC
Q 042802 252 FMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKIS 285 (424)
Q Consensus 252 ~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 285 (424)
.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5555555554444444555555666666666554
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=4.3e-19 Score=177.34 Aligned_cols=172 Identities=27% Similarity=0.302 Sum_probs=98.4
Q ss_pred hcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhc
Q 042802 10 TNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNL 89 (424)
Q Consensus 10 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l 89 (424)
..+++|+.|++++|.+... + .+..+++|+.|+|++|.+++++ .+..+++|+.|+|++|.+.+ ++ .+..+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~-------~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l 108 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK-------PLTNLKNLGWLFLDENKIKD-LS-SLKDL 108 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCG-------GGGGCTTCCEEECCSSCCCC-CT-TSTTC
T ss_pred hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCCh-------hhccCCCCCEEECcCCCCCC-Ch-hhccC
Confidence 3455666666666666532 2 3556666666666666665553 15566666666666666653 22 45555
Q ss_pred ccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEe
Q 042802 90 SMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFV 169 (424)
Q Consensus 90 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 169 (424)
.+|++|+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+..| +..+++|+.|+
T Consensus 109 -~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 181 (605)
T 1m9s_A 109 -KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 181 (605)
T ss_dssp -TTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred -CCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEE
Confidence 3566666666666432 3455666666666666666543 445566666666666666654433 55666666666
Q ss_pred ccCCcCccCCCccCCCCCCCCEEEccCCCCCC
Q 042802 170 ILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD 201 (424)
Q Consensus 170 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 201 (424)
+++|.+.+. ..+..+++|+.|++++|.+..
T Consensus 182 Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 182 LSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 666666543 235556666666666655443
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=4.4e-19 Score=167.22 Aligned_cols=153 Identities=24% Similarity=0.206 Sum_probs=82.5
Q ss_pred CEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHH-hcccccceeEeecCcCcccchhhhcCCcccc
Q 042802 40 EWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIG-NLSMSLKTLIIANCSIIGNIRRAIGNLSNLL 118 (424)
Q Consensus 40 ~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 118 (424)
+.++++++.++.+|. .+. +.++.|+|++|.+++..+..+. .+ .+|++|++++|.+.+..+..|.++++|+
T Consensus 21 ~~l~c~~~~l~~iP~------~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l-~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ------SLP--SYTALLDLSHNNLSRLRAEWTPTRL-TNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp TEEECCSSCCSSCCS------SCC--TTCSEEECCSSCCCEECTTSSSSCC-TTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEEEeCCCCcCccCc------cCC--CCCCEEECCCCCCCccChhhhhhcc-cccCEEECCCCcCCccChhhccCCCCCC
Confidence 456666666666552 221 2455666666666544444443 44 3566666666666555555555666666
Q ss_pred eeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccC---CCCCCCCEEEcc
Q 042802 119 ALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCL---SNLTSLRSLYLG 195 (424)
Q Consensus 119 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~ 195 (424)
+|+|++|.++...+..|..+++|+.|+|++|++.+..+..|..+++|+.|++++|.+....+..+ ..+++|+.|+++
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 66666666654444455556666666666666555545555555555555555555554333333 335555555555
Q ss_pred CCCCCC
Q 042802 196 SNSLKD 201 (424)
Q Consensus 196 ~n~l~~ 201 (424)
+|.++.
T Consensus 172 ~N~l~~ 177 (361)
T 2xot_A 172 SNKLKK 177 (361)
T ss_dssp SSCCCC
T ss_pred CCCCCc
Confidence 555443
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=152.19 Aligned_cols=156 Identities=22% Similarity=0.250 Sum_probs=112.6
Q ss_pred ccceeEeecCcCcccchhhhcCCcccceeecccCccccccC-cccCCCCCCCeEEccCCcccccCChhhcCCcccceEec
Q 042802 92 SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIP-ITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVI 170 (424)
Q Consensus 92 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 170 (424)
.-+++++++|.+.. +|..+. +.+++|++++|.+++..+ ..|..+++|+.|++++|++.+..+..|..+++|++|++
T Consensus 12 ~~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 12 EGTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp ETTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 45789999999864 566543 467899999999997654 45899999999999999999877778999999999999
Q ss_pred cCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCc
Q 042802 171 LGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDL 250 (424)
Q Consensus 171 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 250 (424)
++|.+.+..+..+..+++|+.|++++|.++. ..|..|..+++|
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------------------------------~~~~~~~~l~~L 131 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITC-------------------------------------VGNDSFIGLSSV 131 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCC-------------------------------------BCTTSSTTCTTC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCe-------------------------------------ECHhHcCCCccC
Confidence 8888877666666666666666665555443 444445555555
Q ss_pred cEeeccCccccccchhhhcCCCCCCEEECcCCCCCCC
Q 042802 251 QFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGP 287 (424)
Q Consensus 251 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 287 (424)
+.|++++|++++..|..|..+++|+.|++++|++.+.
T Consensus 132 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 5555656655555555566666666666666666543
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=2.6e-21 Score=192.20 Aligned_cols=38 Identities=21% Similarity=0.092 Sum_probs=26.8
Q ss_pred cCCccCceeeccCccCCccCChhHHhcccccceeEeecCc
Q 042802 63 ANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCS 102 (424)
Q Consensus 63 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~ 102 (424)
..+++|+.|++++|.++ .+|+.++.+. +|++|++++|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~ 383 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKW 383 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccch
Confidence 55677777777777776 6777777773 77777775543
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=2.6e-18 Score=151.12 Aligned_cols=155 Identities=20% Similarity=0.187 Sum_probs=87.4
Q ss_pred ceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCC
Q 042802 118 LALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSN 197 (424)
Q Consensus 118 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 197 (424)
+.++.+++.++ .+|..+. ++|++|++++|.+.+..|..|..+++|+.|++++|.+....+..+.
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~------------- 85 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD------------- 85 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-------------
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc-------------
Confidence 44566666555 4444332 5555666666555554455555555555555555555433333344
Q ss_pred CCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEE
Q 042802 198 SLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVL 277 (424)
Q Consensus 198 ~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 277 (424)
.+++|+.|++++|.+++..+..|..+++|+.|++++|+++ .+|..+..+++|++|
T Consensus 86 ------------------------~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 86 ------------------------SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL 140 (229)
T ss_dssp ------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE
T ss_pred ------------------------cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE
Confidence 4455555555555555444444555666666666666665 455556666666666
Q ss_pred ECcCCCCCCCCcccccCCCCCCEEEcccccCcccCC
Q 042802 278 NLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIP 313 (424)
Q Consensus 278 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 313 (424)
+|++|.+++..+..+..+++|+.|++++|++.+..+
T Consensus 141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 666666665555556666666666666666665544
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=5e-18 Score=149.33 Aligned_cols=155 Identities=23% Similarity=0.195 Sum_probs=115.2
Q ss_pred ccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEecc
Q 042802 92 SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171 (424)
Q Consensus 92 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 171 (424)
.-+.++.+++.+. .+|..+. ++|++|++++|.+++..|..+..+++|++|+|++|++....+..|..+++|+.|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 6778999988884 5565443 899999999999998889999999999999999999986666778999999999999
Q ss_pred CCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCcc
Q 042802 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQ 251 (424)
Q Consensus 172 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 251 (424)
+|.+.+..+..+..+++|+.|++++|.++. +| ..+..+++|+
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--------------lp------------------------~~~~~l~~L~ 138 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTE--------------LP------------------------RGIERLTHLT 138 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCS--------------CC------------------------TTGGGCTTCS
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccc--------------cC------------------------cccccCCCCC
Confidence 999987766666777777777766666543 33 3344455555
Q ss_pred EeeccCccccccchhhhcCCCCCCEEECcCCCCCCC
Q 042802 252 FMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGP 287 (424)
Q Consensus 252 ~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 287 (424)
.|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus 139 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 139 HLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred EEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 555555555544444555666666666666666543
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=5.6e-21 Score=189.85 Aligned_cols=217 Identities=18% Similarity=0.141 Sum_probs=121.5
Q ss_pred CCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcC
Q 042802 34 GNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGN 113 (424)
Q Consensus 34 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~ 113 (424)
..+++|+.|+|++|.++.+| ..++++++|+.|++++|.....+|. .+. .+...+..|..++.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp------~~i~~l~~L~~L~l~~n~~l~~l~~-------ll~-----~~~~~~~~~~~l~~ 407 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQ------SELESCKELQELEPENKWCLLTIIL-------LMR-----ALDPLLYEKETLQY 407 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHH------HHHHHHHHHHHHCTTCHHHHHHHHH-------HHH-----HHCTGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhH------HHHHHHHHHHHhccccchhhhhHHH-------HHH-----hcccccCCHHHHHH
Confidence 67899999999999999887 7899999999999977642111111 111 11223445555566
Q ss_pred Ccccceee-cccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEE
Q 042802 114 LSNLLALT-LEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSL 192 (424)
Q Consensus 114 l~~L~~L~-l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 192 (424)
+++|+.|+ ++.|.+. .|+.+.+.+|.+... +. ..|+.|++++|.+++ +|. +..+++|+.|
T Consensus 408 l~~L~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L 468 (567)
T 1dce_A 408 FSTLKAVDPMRAAYLD-----------DLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHL 468 (567)
T ss_dssp HHHHHHHCGGGHHHHH-----------HHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEE
T ss_pred HHhcccCcchhhcccc-----------hhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccccccCcEe
Confidence 66666665 4444322 122222333332211 10 124444444444443 233 4455555555
Q ss_pred EccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccc-hhhhcCC
Q 042802 193 YLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPI-PELFGDL 271 (424)
Q Consensus 193 ~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~-~~~l~~l 271 (424)
++++|.++. +|..++.+++|+.|++++|.+++ +| .+..+++|+.|++++|++++.. |..++.+
T Consensus 469 ~Ls~N~l~~--------------lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l 532 (567)
T 1dce_A 469 DLSHNRLRA--------------LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSC 532 (567)
T ss_dssp ECCSSCCCC--------------CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGC
T ss_pred ecCcccccc--------------cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcC
Confidence 555555443 44455556666666666666663 44 5666666666666666666554 6666666
Q ss_pred CCCCEEECcCCCCCCCCcc---cccCCCCCCEEEc
Q 042802 272 TSLEVLNLSKNKISGPIPT---SMEKLVYLRELNL 303 (424)
Q Consensus 272 ~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l 303 (424)
++|+.|+|++|++++.+|. .+..+++|+.|++
T Consensus 533 ~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 533 PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 6777777777766654432 2233666666653
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=8.7e-19 Score=150.54 Aligned_cols=155 Identities=17% Similarity=0.251 Sum_probs=92.9
Q ss_pred CCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcC
Q 042802 34 GNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGN 113 (424)
Q Consensus 34 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~ 113 (424)
+.+++|++|++++|.++.+| .+..+++|+.|++++|.++ .+..+..+ ++|++|++++|.+.+..+..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-------~l~~l~~L~~L~l~~n~~~--~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-------GIEYAHNIKDLTINNIHAT--NYNPISGL-SNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-------TGGGCTTCSEEEEESCCCS--CCGGGTTC-TTCCEEEEECTTCBGGGSCCCTT
T ss_pred hhcCCccEEeccCCCccChH-------HHhcCCCCCEEEccCCCCC--cchhhhcC-CCCCEEEeECCccCcccChhhcC
Confidence 44556666666666666543 2555566666666666444 22345555 36666666666666555566666
Q ss_pred CcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEE
Q 042802 114 LSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLY 193 (424)
Q Consensus 114 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 193 (424)
+++|++|++++|.+++..|..+..+++|++|++++|...+.+| .+..+++|+.|++++|.+.+.. .+..+++|+.|+
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~ 187 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLY 187 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEE
Confidence 6666666666666665556666666667777776666222343 4666667777777777666432 466677777777
Q ss_pred ccCCCCCC
Q 042802 194 LGSNSLKD 201 (424)
Q Consensus 194 l~~n~l~~ 201 (424)
+++|++..
T Consensus 188 l~~N~i~~ 195 (197)
T 4ezg_A 188 AFSQTIGG 195 (197)
T ss_dssp ECBC----
T ss_pred eeCcccCC
Confidence 77776543
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=4e-18 Score=146.36 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=80.6
Q ss_pred ccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEecc
Q 042802 92 SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171 (424)
Q Consensus 92 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 171 (424)
+|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 5555555555553 233 3555555555555555443 12245555555555555555554445555555555555555
Q ss_pred CCcCccCCCccCCCCCCCCEEEccCCC-CCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCc
Q 042802 172 GNKPSGSIPSCLSNLTSLRSLYLGSNS-LKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDL 250 (424)
Q Consensus 172 ~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 250 (424)
+|.+.+..+..+..+++|+.|++++|. ++. ++ .+..+++|++|++++|.+++ ++ .+..+++|
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~--------------~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L 183 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITD--------------IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKL 183 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCC--------------CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccc--------------cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCC
Confidence 555555445555556666666666655 433 22 35556666666666666663 33 55666777
Q ss_pred cEeeccCcccc
Q 042802 251 QFMDLAYNRSE 261 (424)
Q Consensus 251 ~~L~ls~n~l~ 261 (424)
+.|++++|++.
T Consensus 184 ~~L~l~~N~i~ 194 (197)
T 4ezg_A 184 NQLYAFSQTIG 194 (197)
T ss_dssp CEEEECBC---
T ss_pred CEEEeeCcccC
Confidence 77777777654
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=2.1e-18 Score=155.05 Aligned_cols=166 Identities=21% Similarity=0.349 Sum_probs=89.3
Q ss_pred ccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEecc
Q 042802 92 SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171 (424)
Q Consensus 92 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 171 (424)
++..++++++.+.... .+..+++|++|++++|.++ .++ .+..+++|++|++++|++.+..+ +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 5666666666664332 4566677777777777766 344 46666777777777776664332 5566666666666
Q ss_pred CCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCcc
Q 042802 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQ 251 (424)
Q Consensus 172 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 251 (424)
+|.+.+. +. +.. ++|+.|++++|.+++ ++ .+..+++|+
T Consensus 94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~--------------------------------------~~-~l~~l~~L~ 131 (263)
T 1xeu_A 94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRD--------------------------------------TD-SLIHLKNLE 131 (263)
T ss_dssp SSCCSCC-TT-CCC-SSCCEEECCSSCCSB--------------------------------------SG-GGTTCTTCC
T ss_pred CCccCCc-Cc-ccc-CcccEEEccCCccCC--------------------------------------Ch-hhcCccccc
Confidence 6665542 21 111 455555555554443 11 244444555
Q ss_pred EeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCc
Q 042802 252 FMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLE 309 (424)
Q Consensus 252 ~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 309 (424)
.|++++|++++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|++.
T Consensus 132 ~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 132 ILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp EEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred EEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 555555554432 2 344455555555555555433 34445555555555555554
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=3.5e-18 Score=153.53 Aligned_cols=171 Identities=22% Similarity=0.289 Sum_probs=138.3
Q ss_pred CCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCe
Q 042802 64 NCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQG 143 (424)
Q Consensus 64 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 143 (424)
.+.++..++++++.+++ ++ .+..+ .+|++|++++|.+.. ++ .+..+++|++|++++|.+++. +. +..+++|+.
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l-~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKEL-SGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHH-TTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhc-CcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCE
Confidence 56778889999999984 44 57777 499999999999964 44 788999999999999999954 44 899999999
Q ss_pred EEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCccccccccccccc
Q 042802 144 LDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNL 223 (424)
Q Consensus 144 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l 223 (424)
|++++|++.+ +|. +.. ++|+.|++++|.+.+. +.+..+++|+.|++++|+++++ + .+..+
T Consensus 90 L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--------------~-~l~~l 149 (263)
T 1xeu_A 90 LSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--------------V-MLGFL 149 (263)
T ss_dssp EECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--------------G-GGGGC
T ss_pred EECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--------------h-HHccC
Confidence 9999999985 443 233 8999999999999864 3588899999999999988762 2 46677
Q ss_pred CcccEEECccCcccccCchhhccCcCccEeeccCcccccc
Q 042802 224 KVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGP 263 (424)
Q Consensus 224 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ 263 (424)
++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 150 ~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 150 SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 8888888888888755 5677777888888888877644
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=1.2e-18 Score=178.27 Aligned_cols=182 Identities=21% Similarity=0.215 Sum_probs=102.7
Q ss_pred cchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCC
Q 042802 106 NIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSN 185 (424)
Q Consensus 106 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 185 (424)
..+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..|..+++|+.|+|++|.++ .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34566777777777777777777 56666667777777777777777 66777777777777777777777 55777777
Q ss_pred CCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcC-ccEeeccCccccccc
Q 042802 186 LTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKD-LQFMDLAYNRSEGPI 264 (424)
Q Consensus 186 l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-L~~L~ls~n~l~~~~ 264 (424)
+++|+.|++++|.++. +|..|+.+++|+.|+|++|.+++.+|..+..+.. +..+++++|.+++.+
T Consensus 292 l~~L~~L~L~~N~l~~--------------lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTT--------------LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp GTTCSEEECCSSCCCC--------------CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CCCCCEEECCCCCCCc--------------cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 7778888777777654 5666777888888888888888777777654422 234678888887766
Q ss_pred hhhhcCCCCCCEEECcCC--------CCCCCCcccccCCCCCCEEEcccccCcc
Q 042802 265 PELFGDLTSLEVLNLSKN--------KISGPIPTSMEKLVYLRELNLSFNKLEG 310 (424)
Q Consensus 265 ~~~l~~l~~L~~L~L~~n--------~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 310 (424)
|. .|+.|++++| .+.+..+..+..+..+....+++|-+.+
T Consensus 358 p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 358 PH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp CC------C-----------------------------------------CCCG
T ss_pred cc------ccceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 64 3455666665 2333333344555666666777776653
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=6.8e-18 Score=144.24 Aligned_cols=117 Identities=31% Similarity=0.422 Sum_probs=70.0
Q ss_pred ccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCC
Q 042802 220 IGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLR 299 (424)
Q Consensus 220 l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 299 (424)
+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..|..+..+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 55566666666666666655566666666666666666666665555566666666666666666666666666666667
Q ss_pred EEEcccccCcccCCCCCcccccccccccCCcCCcCCC
Q 042802 300 ELNLSFNKLEGEIPSGGIFTSFIAESFMGNELLCGLP 336 (424)
Q Consensus 300 ~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 336 (424)
+|++++|++.+..+.......+....+.++...|+.|
T Consensus 130 ~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 130 SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp EEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred EEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 7777777666655422111122223344444456544
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=9.6e-18 Score=156.01 Aligned_cols=274 Identities=15% Similarity=0.093 Sum_probs=173.5
Q ss_pred ecCchhhhc--CCCCCEEeccCCcccccCccccCC-CCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCC
Q 042802 3 GTIPSSITN--ASKLTVLELGGNTFSGFIPNTIGN-LRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLD 79 (424)
Q Consensus 3 g~lp~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 79 (424)
|.++..+.. +.+++.|.++++- .......+.. +++|++|||++|++.... ..-+.++.++.+.+..+.+.
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~------~~~~~~~~~~~~~~~~~~I~ 85 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYS------GKAGTYPNGKFYIYMANFVP 85 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEE------ESSSSSGGGCCEEECTTEEC
T ss_pred CcHHhhccchhhCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEec------CccccccccccccccccccC
Confidence 555555554 6788999988752 2111222333 788999999999988321 01111222333444443221
Q ss_pred ccCChhHHh--------cccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcc
Q 042802 80 GFLPSSIGN--------LSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKL 151 (424)
Q Consensus 80 ~~~~~~~~~--------l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~ 151 (424)
+..|.. + .+|++|++.+ .+..+.+.+|.++++|+.+++.+|.+....+.+|.++.++..+.+..+..
T Consensus 86 ---~~aF~~~~~~~~~g~-~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~ 160 (329)
T 3sb4_A 86 ---AYAFSNVVNGVTKGK-QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA 160 (329)
T ss_dssp ---TTTTEEEETTEEEEC-TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH
T ss_pred ---HHHhccccccccccc-CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh
Confidence 223333 4 4777777777 66666666777777777777777777656666677766666665544211
Q ss_pred ----cccCChhhcCCcccc--------------------------eEeccCCcCccCCCccCCCCCCCCEEEccCCCCCC
Q 042802 152 ----VGSFPDELCHLARLA--------------------------EFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD 201 (424)
Q Consensus 152 ----~~~~~~~l~~l~~L~--------------------------~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 201 (424)
.......|..+..|+ .+.+.++-...........+++|+.+++++|+++.
T Consensus 161 ~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~ 240 (329)
T 3sb4_A 161 YRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT 240 (329)
T ss_dssp HHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE
T ss_pred hhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce
Confidence 111122233333333 33333221110000001137889999998887766
Q ss_pred ceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCcc-EeeccCccccccchhhhcCCCCCCEEECc
Q 042802 202 ILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQ-FMDLAYNRSEGPIPELFGDLTSLEVLNLS 280 (424)
Q Consensus 202 i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-~L~ls~n~l~~~~~~~l~~l~~L~~L~L~ 280 (424)
+ -+..|.++++|+++++.+| +....+..|.++.+|+ .+++.+ .++...+.+|.++++|+.++++
T Consensus 241 I-------------~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 241 I-------------PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp E-------------CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEEC
T ss_pred e-------------cHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeC
Confidence 4 3456888899999999887 7767777899999999 999988 7776677889999999999999
Q ss_pred CCCCCCCCcccccCCCCCCEEEc
Q 042802 281 KNKISGPIPTSMEKLVYLRELNL 303 (424)
Q Consensus 281 ~n~l~~~~~~~l~~l~~L~~L~l 303 (424)
+|.+....+..|.++++|+.+..
T Consensus 306 ~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 306 GDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp SSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCccCccchhhhcCCcchhhhcc
Confidence 99998777788999999998863
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.8e-17 Score=169.69 Aligned_cols=143 Identities=24% Similarity=0.291 Sum_probs=91.2
Q ss_pred CccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccch
Q 042802 29 IPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIR 108 (424)
Q Consensus 29 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~ 108 (424)
.+..+..+++|+.|+|++|.+..+| ..+..+++|+.|+|++|.++ .+|..++.+. +|++|+|++|.+. .+|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-~L~~L~Ls~N~l~-~lp 286 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNIS------ANIFKYDFLTRLYLNGNSLT-ELPAEIKNLS-NLRVLDLSHNRLT-SLP 286 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCC------GGGGGCCSCSCCBCTTSCCS-CCCGGGGGGT-TCCEEECTTSCCS-SCC
T ss_pred ChhhhccCCCCcEEECCCCCCCCCC------hhhcCCCCCCEEEeeCCcCc-ccChhhhCCC-CCCEEeCcCCcCC-ccC
Confidence 3555666777777777777776665 44456677777777777776 6676676663 6777777777775 556
Q ss_pred hhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcc-cceEeccCCcCccCCCc
Q 042802 109 RAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLAR-LAEFVILGNKPSGSIPS 181 (424)
Q Consensus 109 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~ 181 (424)
..+..+++|++|+|++|.++ .+|..|+.+++|+.|+|++|.+.+.+|..+..+.. +..+++.+|.+.+.+|.
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred hhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 66777777777777777776 56666777777777777777777666665544322 22356666766666554
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.6e-16 Score=132.58 Aligned_cols=133 Identities=24% Similarity=0.194 Sum_probs=85.5
Q ss_pred CCCCCEEeccCCccc-ccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcc
Q 042802 12 ASKLTVLELGGNTFS-GFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLS 90 (424)
Q Consensus 12 ~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 90 (424)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-------SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-------SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-------hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 366777777777776 56666667777777777777776654 3466677777777777777655666665563
Q ss_pred cccceeEeecCcCcccc-hhhhcCCcccceeecccCccccccC---cccCCCCCCCeEEccCCccc
Q 042802 91 MSLKTLIIANCSIIGNI-RRAIGNLSNLLALTLEGNKLTGPIP---ITFGRLQKLQGLDLAFNKLV 152 (424)
Q Consensus 91 ~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~L~~n~~~ 152 (424)
+|++|++++|.+.+.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 96 -~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 -NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp -TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred -CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6777777777665432 2456666666666666666663322 25556666666666666554
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=2e-16 Score=135.11 Aligned_cols=132 Identities=22% Similarity=0.243 Sum_probs=79.5
Q ss_pred ceeecccCccccccCcccCCCCCCCeEEccCCcccccCCh-hhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccC
Q 042802 118 LALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPD-ELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGS 196 (424)
Q Consensus 118 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 196 (424)
+++++++|.++ .+|..+.. +|++|++++|.+.+..+. .+..+++|++|++++|.+++..
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------------- 70 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE----------------- 70 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-----------------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-----------------
Confidence 45666666665 45544322 555666666655533332 2444444444444444444443
Q ss_pred CCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCE
Q 042802 197 NSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEV 276 (424)
Q Consensus 197 n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 276 (424)
|..+.++++|++|++++|.+++..+..|..+++|++|++++|++++..|..+..+++|++
T Consensus 71 --------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (192)
T 1w8a_A 71 --------------------PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp --------------------TTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred --------------------HhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence 444555556666666666666556666667777777777777777777777777788888
Q ss_pred EECcCCCCCCCCc
Q 042802 277 LNLSKNKISGPIP 289 (424)
Q Consensus 277 L~L~~n~l~~~~~ 289 (424)
|++++|++.+..+
T Consensus 131 L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 131 LNLASNPFNCNCH 143 (192)
T ss_dssp EECTTCCBCCSGG
T ss_pred EEeCCCCccCcCc
Confidence 8888888776543
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=135.20 Aligned_cols=131 Identities=25% Similarity=0.298 Sum_probs=99.9
Q ss_pred ceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhc
Q 042802 166 AEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIV 245 (424)
Q Consensus 166 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 245 (424)
+.++++++.+. .+|..+ .++|+.|++++|.++. +|..+.++++|+.|++++|.+++..+..|.
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~~--------------ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~ 75 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFTL--------------VPKELSNYKHLTLIDLSNNRISTLSNQSFS 75 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCCS--------------CCGGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCch--------------hHHHhhcccCCCEEECCCCcCCEeCHhHcc
Confidence 34555555555 233333 2467777777777664 456677788888888888888877777888
Q ss_pred cCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCC
Q 042802 246 GLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIP 313 (424)
Q Consensus 246 ~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 313 (424)
.+++|++|++++|++++..+..|..+++|++|+|++|.++...+..+..+++|+.|++++|++.+...
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 88889999999998888777788888999999999999886666678888899999999998876543
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=1.8e-16 Score=129.55 Aligned_cols=129 Identities=24% Similarity=0.240 Sum_probs=100.6
Q ss_pred cCCCCCEEeccCCccc-ccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhc
Q 042802 11 NASKLTVLELGGNTFS-GFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNL 89 (424)
Q Consensus 11 ~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l 89 (424)
..++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-------ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-------TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-------hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 3478899999999988 67788888899999999999988776 457788888899998888887677777777
Q ss_pred ccccceeEeecCcCccc-chhhhcCCcccceeecccCccccccC---cccCCCCCCCeEEcc
Q 042802 90 SMSLKTLIIANCSIIGN-IRRAIGNLSNLLALTLEGNKLTGPIP---ITFGRLQKLQGLDLA 147 (424)
Q Consensus 90 ~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~L~ 147 (424)
+ +|++|++++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 88 ~-~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 88 P-NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp T-TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred C-CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 4 888888888888653 34677778888888888888775443 356777777777765
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=4.1e-16 Score=130.14 Aligned_cols=131 Identities=21% Similarity=0.227 Sum_probs=81.9
Q ss_pred ccceEeccCCcCc-cCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCch
Q 042802 164 RLAEFVILGNKPS-GSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPA 242 (424)
Q Consensus 164 ~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 242 (424)
+|+.|++++|.+. +.+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+++.+|.
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~l~~L~~L~Ls~N~l~~~~~~ 89 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---------------SNLPKLPKLKKLELSENRIFGGLDM 89 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---------------SSCCCCSSCCEEEEESCCCCSCCCH
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---------------hhhccCCCCCEEECcCCcCchHHHH
Confidence 3444444444443 33444445555555555555554431 2345556666666666666655666
Q ss_pred hhccCcCccEeeccCccccccc-hhhhcCCCCCCEEECcCCCCCCCCc---ccccCCCCCCEEEcccccCc
Q 042802 243 TIVGLKDLQFMDLAYNRSEGPI-PELFGDLTSLEVLNLSKNKISGPIP---TSMEKLVYLRELNLSFNKLE 309 (424)
Q Consensus 243 ~~~~l~~L~~L~ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~ 309 (424)
.+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666777777777777776532 2567777788888888887775544 46777788888888887775
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=3.4e-16 Score=127.85 Aligned_cols=128 Identities=20% Similarity=0.238 Sum_probs=99.2
Q ss_pred cccceEeccCCcCc-cCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCc
Q 042802 163 ARLAEFVILGNKPS-GSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIP 241 (424)
Q Consensus 163 ~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 241 (424)
++|+.|++++|.+. +.+|..+..+++|+.|++++|.++++ ..+..+++|++|++++|.+++.+|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~l~~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---------------ANLPKLNKLKKLELSDNRVSGGLE 81 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---------------TTCCCCTTCCEEECCSSCCCSCTH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---------------hhhhcCCCCCEEECCCCcccchHH
Confidence 56777777777776 56666777778888888887777652 346677888888888888887678
Q ss_pred hhhccCcCccEeeccCcccccc-chhhhcCCCCCCEEECcCCCCCCCCc---ccccCCCCCCEEEccc
Q 042802 242 ATIVGLKDLQFMDLAYNRSEGP-IPELFGDLTSLEVLNLSKNKISGPIP---TSMEKLVYLRELNLSF 305 (424)
Q Consensus 242 ~~~~~l~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~ 305 (424)
..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 82 ~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8777888899999999988863 34778888999999999998886655 4678888999888764
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=5.4e-16 Score=144.13 Aligned_cols=259 Identities=15% Similarity=0.107 Sum_probs=174.7
Q ss_pred CCCCCEEEccCCccCCCCCcccccccccC-CccCceeeccCccCC--ccCChhHHhcccccceeEeecCcCcccchhhhc
Q 042802 36 LRNHEWLNLANNSLTSSTSKLSFLSSLAN-CKKLRNINLIGNPLD--GFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIG 112 (424)
Q Consensus 36 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~-l~~L~~L~l~~n~~~--~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~ 112 (424)
+.+++.|.++++ +... ++ ..+.. +++|+.|||++|.+. ..... .++ .++.+.+..+. ....+|.
T Consensus 24 ~~~l~~L~l~g~-i~~~--~~---~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~-~~~~~~~~~~~---I~~~aF~ 90 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAE--DF---RHLRDEFPSLKVLDISNAEIKMYSGKAG---TYP-NGKFYIYMANF---VPAYAFS 90 (329)
T ss_dssp HHHCSEEEEEEE-ECHH--HH---HHHHHSCTTCCEEEEEEEEECCEEESSS---SSG-GGCCEEECTTE---ECTTTTE
T ss_pred hCceeEEEEecc-ccHH--HH---HHHHHhhccCeEEecCcceeEEecCccc---ccc-ccccccccccc---cCHHHhc
Confidence 567888888764 2211 11 23333 678999999999887 22211 121 24445555443 3345667
Q ss_pred C--------CcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCc----CccCCC
Q 042802 113 N--------LSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNK----PSGSIP 180 (424)
Q Consensus 113 ~--------l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~----~~~~~~ 180 (424)
+ +++|+.|++.+ .++..-+.+|.+|++|+.+++..|.+....+..|..+.++..+....+. ......
T Consensus 91 ~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~ 169 (329)
T 3sb4_A 91 NVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH 169 (329)
T ss_dssp EEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT
T ss_pred ccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc
Confidence 7 99999999998 8886667789999999999999998876777788887777777665522 122233
Q ss_pred ccCCCCCCCC-EEEccCCC------------CCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccC
Q 042802 181 SCLSNLTSLR-SLYLGSNS------------LKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGL 247 (424)
Q Consensus 181 ~~l~~l~~L~-~L~l~~n~------------l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l 247 (424)
..|..+..|+ .+.+.... ...+..+.+.++-...........+++|+++++++|.++...+..|.++
T Consensus 170 ~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~ 249 (329)
T 3sb4_A 170 FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK 249 (329)
T ss_dssp SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC
T ss_pred cccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC
Confidence 3455566666 34333211 0111222222111000011111237899999999999997777789999
Q ss_pred cCccEeeccCccccccchhhhcCCCCCC-EEECcCCCCCCCCcccccCCCCCCEEEcccccCcc
Q 042802 248 KDLQFMDLAYNRSEGPIPELFGDLTSLE-VLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEG 310 (424)
Q Consensus 248 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 310 (424)
.+|+.+++++| ++...+.+|.++++|+ .+++.+ .++...+..|.++++|+.+++++|++..
T Consensus 250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 99999999998 7767778899999999 999998 7776667899999999999999998874
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=1.1e-14 Score=138.35 Aligned_cols=267 Identities=9% Similarity=0.043 Sum_probs=121.1
Q ss_pred CCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccc
Q 042802 13 SKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMS 92 (424)
Q Consensus 13 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~ 92 (424)
..++.+.+.++ ++.....+|.++ +|+.+.+..+ ++.++. .+|.++ +|+.+.+.. .++..-+..|..+ .+
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~-----~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c-~~ 181 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGD-----MAFFNS-TVQEIVFPS-TLEQLKEDIFYYC-YN 181 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECT-----TTTTTC-CCCEEECCT-TCCEECSSTTTTC-TT
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECH-----HhcCCC-CceEEEeCC-CccEehHHHhhCc-cc
Confidence 44444444432 332334445543 4555555443 444432 334443 455555543 3333333444444 25
Q ss_pred cceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccC
Q 042802 93 LKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILG 172 (424)
Q Consensus 93 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 172 (424)
|+.+++..|.+......+|. +.+|+.+.+.. .++..-..+|.++++|+.+++..+ +.......|.. .+|+.+.+.
T Consensus 182 L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp- 256 (401)
T 4fdw_A 182 LKKADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP- 256 (401)
T ss_dssp CCEEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-
T ss_pred CCeeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-
Confidence 55555555555444334443 35555555552 244344445555555555555543 22222333443 455555552
Q ss_pred CcCccCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccE
Q 042802 173 NKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQF 252 (424)
Q Consensus 173 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 252 (424)
+.+......+|..|++|+.+++.+|.+.. +.....-+..|.++++|+.+.+.. .++......|.++.+|+.
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~--------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFND--------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCCC--------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCE
T ss_pred CCccEEChhHhhCCCCCCEEEeCCccccC--------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccE
Confidence 23333444455555555555555544321 000001223444555555555552 244344445555555555
Q ss_pred eeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCC-CCCEEEcccc
Q 042802 253 MDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLV-YLRELNLSFN 306 (424)
Q Consensus 253 L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n 306 (424)
+++..+ ++.....+|.++ +|+.+++++|.+....+..|..++ .+..+.+..+
T Consensus 328 l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 328 LTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp EEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred EEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 555333 333334445555 555555555554433334444442 3444444433
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=6.3e-15 Score=140.09 Aligned_cols=246 Identities=12% Similarity=0.157 Sum_probs=195.7
Q ss_pred hhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHH
Q 042802 8 SITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIG 87 (424)
Q Consensus 8 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 87 (424)
.|.++ +|+.+++..+ ++.....+|.++ +|+.+.+.. .++.++. .+|.+|++|+.+++.+|.++. ++....
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~-----~aF~~c~~L~~l~l~~n~l~~-I~~~aF 200 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKE-----DIFYYCYNLKKADLSKTKITK-LPASTF 200 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECS-----STTTTCTTCCEEECTTSCCSE-ECTTTT
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehH-----HHhhCcccCCeeecCCCcceE-echhhE
Confidence 56665 7999999877 766777888885 699999975 6776654 689999999999999999984 444444
Q ss_pred hcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccce
Q 042802 88 NLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAE 167 (424)
Q Consensus 88 ~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 167 (424)
.. .+|+.+.+..+ +......+|.++++|+.+++..+ ++..-..+|.+ .+|+.+.+. +.+.......|..+++|+.
T Consensus 201 ~~-~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~ 275 (401)
T 4fdw_A 201 VY-AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAE 275 (401)
T ss_dssp TT-CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCE
T ss_pred ee-cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCE
Confidence 45 59999999854 76777789999999999999875 66556677877 789999994 4566566788999999999
Q ss_pred EeccCCcCc-----cCCCccCCCCCCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCch
Q 042802 168 FVILGNKPS-----GSIPSCLSNLTSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPA 242 (424)
Q Consensus 168 L~l~~n~~~-----~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 242 (424)
+.+.++... ...+..|..|++|+.+++.. .++.+ -...|.++++|+.+.+..+ ++.....
T Consensus 276 l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I-------------~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 276 VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRIL-------------GQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp EEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEE-------------CTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred EEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEE-------------hhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 999887765 45667899999999999984 35443 2456888899999999665 6657778
Q ss_pred hhccCcCccEeeccCccccccchhhhcCCC-CCCEEECcCCCC
Q 042802 243 TIVGLKDLQFMDLAYNRSEGPIPELFGDLT-SLEVLNLSKNKI 284 (424)
Q Consensus 243 ~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l 284 (424)
.|.++ +|+.+++.+|.+.......|.+++ .++.|++..+.+
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 89999 999999999988866667787774 788998877654
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=3.5e-15 Score=127.33 Aligned_cols=107 Identities=25% Similarity=0.319 Sum_probs=50.1
Q ss_pred cCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEc
Q 042802 67 KLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDL 146 (424)
Q Consensus 67 ~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 146 (424)
+|+.|++++|.++ .+|..+..+. +|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|..+++|+.|+|
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 4444444444444 3344444442 4444444444444444444444455555555555554444444444555555555
Q ss_pred cCCcccccCChhhcCCcccceEeccCCcC
Q 042802 147 AFNKLVGSFPDELCHLARLAEFVILGNKP 175 (424)
Q Consensus 147 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 175 (424)
++|.+....+..|..+++|+.|++++|.+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55554433333444455555555555443
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=6.6e-15 Score=123.91 Aligned_cols=114 Identities=24% Similarity=0.286 Sum_probs=80.9
Q ss_pred CCCCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchh
Q 042802 187 TSLRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPE 266 (424)
Q Consensus 187 ~~L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~ 266 (424)
++|+.|++++|.++++ .+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+.
T Consensus 28 ~~l~~L~l~~n~l~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 94 (177)
T 2o6r_A 28 SSATRLELESNKLQSL-------------PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNG 94 (177)
T ss_dssp TTCSEEECCSSCCCCC-------------CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcEEEeCCCcccEe-------------CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHH
Confidence 4566666666555442 233456667777777777777755555667778888888888888766666
Q ss_pred hhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCC
Q 042802 267 LFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIP 313 (424)
Q Consensus 267 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 313 (424)
.+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 95 VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 67778888888888888886655566778888888888888887665
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.3e-14 Score=122.03 Aligned_cols=109 Identities=24% Similarity=0.242 Sum_probs=55.0
Q ss_pred ccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEecc
Q 042802 92 SLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVIL 171 (424)
Q Consensus 92 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 171 (424)
+|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 45555555555544444444555555555555555554333444555555555555555554444444455555555555
Q ss_pred CCcCccCCCccCCCCCCCCEEEccCCCCC
Q 042802 172 GNKPSGSIPSCLSNLTSLRSLYLGSNSLK 200 (424)
Q Consensus 172 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 200 (424)
+|.+.+..+..+..+++|+.|++++|.+.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 55554443333444555555555544443
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=6.6e-15 Score=123.75 Aligned_cols=133 Identities=20% Similarity=0.263 Sum_probs=93.5
Q ss_pred hhhcCCCCCEEeccCCcccccCccccCCCC-CCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhH
Q 042802 8 SITNASKLTVLELGGNTFSGFIPNTIGNLR-NHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSI 86 (424)
Q Consensus 8 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 86 (424)
.+.++++|++|++++|.++. ++. +..+. +|++|++++|.++++ ..+..+++|+.|++++|.+++..+..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~-------~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL-------DGFPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE-------CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc-------cccccCCCCCEEECCCCcccccCcchh
Confidence 45567788888888888874 344 44444 888888888887765 357777888888888888875433444
Q ss_pred HhcccccceeEeecCcCcccchh--hhcCCcccceeecccCccccccCcc----cCCCCCCCeEEccCCccc
Q 042802 87 GNLSMSLKTLIIANCSIIGNIRR--AIGNLSNLLALTLEGNKLTGPIPIT----FGRLQKLQGLDLAFNKLV 152 (424)
Q Consensus 87 ~~l~~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~----~~~l~~L~~L~L~~n~~~ 152 (424)
..++ +|++|++++|.+. .+|. .+..+++|++|++++|.++ ..|.. +..+++|+.|+++.|...
T Consensus 85 ~~l~-~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 85 QALP-DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHCT-TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hcCC-CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6664 7888888888774 4444 6777777888888888777 44553 667777777777777654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=1.2e-16 Score=137.29 Aligned_cols=150 Identities=25% Similarity=0.301 Sum_probs=119.6
Q ss_pred hhcCCCCCEEeccCCcccccCcc------ccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccC
Q 042802 9 ITNASKLTVLELGGNTFSGFIPN------TIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFL 82 (424)
Q Consensus 9 ~~~~~~L~~L~l~~n~~~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 82 (424)
+.....++.++++.+.+++..|. .+..+++|++|++++|.++++| .+..+++|+.|++++|.++ .+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-------~~~~l~~L~~L~l~~n~l~-~l 85 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-------SLSGMENLRILSLGRNLIK-KI 85 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-------CHHHHTTCCEEEEEEEEEC-SC
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-------ccccCCCCCEEECCCCCcc-cc
Confidence 55677888888888888887776 7888999999999999988864 4778889999999999988 67
Q ss_pred ChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccC-cccCCCCCCCeEEccCCcccccCCh----
Q 042802 83 PSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIP-ITFGRLQKLQGLDLAFNKLVGSFPD---- 157 (424)
Q Consensus 83 ~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~~n~~~~~~~~---- 157 (424)
|..+..++ +|++|++++|.+.+ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|.
T Consensus 86 ~~~~~~~~-~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 162 (198)
T 1ds9_A 86 ENLDAVAD-TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT 162 (198)
T ss_dssp SSHHHHHH-HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTH
T ss_pred cchhhcCC-cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccch
Confidence 87777774 89999999999865 44 68888999999999999884322 4678889999999999988755443
Q ss_pred ------hhcCCcccceEe
Q 042802 158 ------ELCHLARLAEFV 169 (424)
Q Consensus 158 ------~l~~l~~L~~L~ 169 (424)
.+..+++|+.|+
T Consensus 163 ~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 163 SEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHHCSSCSEEC
T ss_pred HHHHHHHHHhCCCcEEEC
Confidence 256666777665
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.1e-14 Score=122.30 Aligned_cols=130 Identities=22% Similarity=0.262 Sum_probs=60.3
Q ss_pred cCCcccceeecccCccccccCcccCCC-CCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCC
Q 042802 112 GNLSNLLALTLEGNKLTGPIPITFGRL-QKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLR 190 (424)
Q Consensus 112 ~~l~~L~~L~l~~n~l~~~~p~~~~~l-~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 190 (424)
.++++|++|++++|.++ .+|. +..+ ++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 34455555555555555 2332 2222 2555555555555432 3344444455555555444433323334445555
Q ss_pred EEEccCCCCCCceeeeccCCcccccccc--cccccCcccEEECccCcccccCchh----hccCcCccEeeccCccc
Q 042802 191 SLYLGSNSLKDILFFDFSSNFLVGPLSL--DIGNLKVLVRINLSKNNLSGDIPAT----IVGLKDLQFMDLAYNRS 260 (424)
Q Consensus 191 ~L~l~~n~l~~i~~l~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~----~~~l~~L~~L~ls~n~l 260 (424)
.|++++|.++. +|. .+..+++|+.|++++|.+. ..|.. +..+++|+.|++++|..
T Consensus 92 ~L~L~~N~i~~--------------~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLVE--------------LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCCC--------------GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCCc--------------chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55555554433 121 3444455555555555554 22332 44455555555555544
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=5.2e-16 Score=133.22 Aligned_cols=139 Identities=24% Similarity=0.302 Sum_probs=117.3
Q ss_pred CeecCch------hhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeecc
Q 042802 1 FFGTIPS------SITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLI 74 (424)
Q Consensus 1 ~~g~lp~------~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~ 74 (424)
++|.+|. .++.+++|++|++++|.+++ +| .+..+++|++|++++|.++.+| ..+..+++|+.|+++
T Consensus 30 l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~------~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIE------NLDAVADTLEELWIS 101 (198)
T ss_dssp CCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCS------SHHHHHHHCSEEEEE
T ss_pred eccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccccc------chhhcCCcCCEEECc
Confidence 3456665 99999999999999999996 56 7899999999999999999887 566778999999999
Q ss_pred CccCCccCChhHHhcccccceeEeecCcCcccch-hhhcCCcccceeecccCccccccCcc----------cCCCCCCCe
Q 042802 75 GNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIR-RAIGNLSNLLALTLEGNKLTGPIPIT----------FGRLQKLQG 143 (424)
Q Consensus 75 ~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~----------~~~l~~L~~ 143 (424)
+|.+++ +| .+..+ ++|++|++++|.+....+ ..+..+++|++|++++|.+.+..|.. +..+++|+.
T Consensus 102 ~N~l~~-l~-~~~~l-~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 102 YNQIAS-LS-GIEKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EEECCC-HH-HHHHH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred CCcCCc-CC-ccccC-CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 999985 55 68888 499999999999975433 57899999999999999998766553 788999999
Q ss_pred EEccCCccc
Q 042802 144 LDLAFNKLV 152 (424)
Q Consensus 144 L~L~~n~~~ 152 (424)
|+ ++.+.
T Consensus 179 Ld--~~~i~ 185 (198)
T 1ds9_A 179 LD--GMPVD 185 (198)
T ss_dssp EC--CGGGT
T ss_pred EC--CcccC
Confidence 87 55544
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.2e-13 Score=115.14 Aligned_cols=110 Identities=20% Similarity=0.191 Sum_probs=85.7
Q ss_pred CCEEEccCCCCCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhh
Q 042802 189 LRSLYLGSNSLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELF 268 (424)
Q Consensus 189 L~~L~l~~n~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l 268 (424)
.+.+++++|.++. +|..+ .++|++|++++|.+++..|..|..+++|++|++++|++++..+..|
T Consensus 11 ~~~l~~s~n~l~~--------------ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f 74 (170)
T 3g39_A 11 GTTVDCSGKSLAS--------------VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF 74 (170)
T ss_dssp TTEEECTTSCCSS--------------CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCEEEeCCCCcCc--------------cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhc
Confidence 4556666666554 34333 2678888888888887778888888888888888888887777777
Q ss_pred cCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcccCCC
Q 042802 269 GDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEGEIPS 314 (424)
Q Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 314 (424)
..+++|++|+|++|++++..+..+..+++|++|++++|++.+..+.
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 8888999999999988877667788888999999999988876553
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.46 E-value=3.5e-12 Score=121.43 Aligned_cols=280 Identities=15% Similarity=0.126 Sum_probs=167.9
Q ss_pred hhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCC---
Q 042802 7 SSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLP--- 83 (424)
Q Consensus 7 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--- 83 (424)
.+|.+|++|+.+.+..+ ++.....+|.+|++|+.+++.++ ++.++. .+|.++..|+.+.+..+ +.....
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-----~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGR-----CTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT-----TTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccc-----hhhcccccchhhcccCc-eeeecceee
Confidence 35778999999999754 66666788999999999999654 555543 56778888877766543 221111
Q ss_pred -------------------hhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeE
Q 042802 84 -------------------SSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGL 144 (424)
Q Consensus 84 -------------------~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 144 (424)
..|..+ .+|+.+.+..+. ......+|.++.+|+.+++..+ ++......|.++..|+.+
T Consensus 137 ~~~~~~~~~~~~~~~~i~~~aF~~c-~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVIGDEAFATC-ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTC-TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred ecccccccccCccccccchhhhccc-CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 223333 255555554332 2333445555556666555543 332334445555555555
Q ss_pred EccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCC----------CceeeeccCCcccc
Q 042802 145 DLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLK----------DILFFDFSSNFLVG 214 (424)
Q Consensus 145 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~----------~i~~l~l~~n~~~~ 214 (424)
.+..+... +.........|+.+.+... ........+..+..++.+.+..+... .+.........+
T Consensus 214 ~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i-- 288 (394)
T 4fs7_A 214 EFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV-- 288 (394)
T ss_dssp CCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE--
T ss_pred ecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceee--
Confidence 55443221 1222333445555555432 22233456777888888887665321 011122211111
Q ss_pred cccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccC
Q 042802 215 PLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEK 294 (424)
Q Consensus 215 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 294 (424)
....+..+.+|+.+.+..+ +.......|.++.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++.....+|.+
T Consensus 289 -~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 289 -PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp -CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred -ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 1234666788888888655 55455667888888888888754 55455677888888888888766 55455667888
Q ss_pred CCCCCEEEcccc
Q 042802 295 LVYLRELNLSFN 306 (424)
Q Consensus 295 l~~L~~L~l~~n 306 (424)
+++|+.+++..+
T Consensus 365 C~~L~~i~lp~~ 376 (394)
T 4fs7_A 365 CINLKKVELPKR 376 (394)
T ss_dssp CTTCCEEEEEGG
T ss_pred CCCCCEEEECCC
Confidence 888888887643
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=4e-13 Score=112.43 Aligned_cols=90 Identities=22% Similarity=0.235 Sum_probs=71.7
Q ss_pred CcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEc
Q 042802 224 KVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNL 303 (424)
Q Consensus 224 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 303 (424)
++|+.|++++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 67788888888888777778888888888888888888766666778888888888888888666666888888888888
Q ss_pred ccccCcccCC
Q 042802 304 SFNKLEGEIP 313 (424)
Q Consensus 304 ~~n~l~~~~p 313 (424)
++|++.+..+
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 8888876544
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=1.5e-12 Score=108.48 Aligned_cols=86 Identities=27% Similarity=0.303 Sum_probs=42.5
Q ss_pred cccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEc
Q 042802 115 SNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYL 194 (424)
Q Consensus 115 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 194 (424)
++|++|++++|.+++..|..|..+++|++|+|++|++.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 44455555555555444444555555555555555554433334444555555555555554444444555555555555
Q ss_pred cCCCCC
Q 042802 195 GSNSLK 200 (424)
Q Consensus 195 ~~n~l~ 200 (424)
++|.++
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 555443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=2.6e-12 Score=107.42 Aligned_cols=86 Identities=27% Similarity=0.290 Sum_probs=37.6
Q ss_pred cccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEc
Q 042802 115 SNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYL 194 (424)
Q Consensus 115 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 194 (424)
++|++|++++|.+++..|..|..+++|++|+|++|++.+..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 34444444444444333444444444444444444444333333344444444444444444333333444444555544
Q ss_pred cCCCCC
Q 042802 195 GSNSLK 200 (424)
Q Consensus 195 ~~n~l~ 200 (424)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 444443
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=4.9e-12 Score=118.24 Aligned_cols=90 Identities=23% Similarity=0.214 Sum_probs=48.0
Q ss_pred ccccCcccEEECcc-CcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 042802 220 IGNLKVLVRINLSK-NNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYL 298 (424)
Q Consensus 220 l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 298 (424)
+..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..+..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 44555555555553 555544445555555555555555555555555555555555555555555544333443333 5
Q ss_pred CEEEcccccCcc
Q 042802 299 RELNLSFNKLEG 310 (424)
Q Consensus 299 ~~L~l~~n~l~~ 310 (424)
+.|++++|++.+
T Consensus 106 ~~l~l~~N~~~c 117 (347)
T 2ifg_A 106 QELVLSGNPLHC 117 (347)
T ss_dssp CEEECCSSCCCC
T ss_pred eEEEeeCCCccC
Confidence 555555555544
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.30 E-value=7.4e-11 Score=112.22 Aligned_cols=281 Identities=12% Similarity=0.049 Sum_probs=175.5
Q ss_pred hhhhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCC---------------CCccc--ccccccCCccCc
Q 042802 7 SSITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSS---------------TSKLS--FLSSLANCKKLR 69 (424)
Q Consensus 7 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~--~~~~l~~l~~L~ 69 (424)
.+|.+|++|+.+++..+ ++.....+|.++++|+.+.+..+ +..+ +.... -..+|.++++|+
T Consensus 88 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~ 165 (394)
T 4fs7_A 88 FAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLE 165 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCC
T ss_pred hHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCccccccchhhhcccCCCc
Confidence 46788999999999865 55556677888888888776433 1111 10000 014678899999
Q ss_pred eeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCC
Q 042802 70 NINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFN 149 (424)
Q Consensus 70 ~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 149 (424)
.+.+.++. .......|..+ .+|+.+.+..+ +......+|.++..|+.+.+..+... +.........|+.+.+...
T Consensus 166 ~i~l~~~~-~~I~~~~F~~c-~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~ 240 (394)
T 4fs7_A 166 YVSLPDSM-ETLHNGLFSGC-GKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS 240 (394)
T ss_dssp EEECCTTC-CEECTTTTTTC-TTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT
T ss_pred EEecCCcc-ceeccccccCC-CCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC
Confidence 99997653 32344556666 48999999866 54555677888888888887765432 2223334456666665433
Q ss_pred cccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCC--------CceeeeccCCccccccccccc
Q 042802 150 KLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLK--------DILFFDFSSNFLVGPLSLDIG 221 (424)
Q Consensus 150 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~--------~i~~l~l~~n~~~~~~~~~l~ 221 (424)
. .......+..+..|+.+.+..+... .....+..+..++.+....+.+. .+..+.+..+ +...-...|.
T Consensus 241 ~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~ 317 (394)
T 4fs7_A 241 F-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFE 317 (394)
T ss_dssp C-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTT
T ss_pred c-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhc
Confidence 2 2223344555666666665544221 22334444445544443332111 1223333222 2222345688
Q ss_pred ccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEE
Q 042802 222 NLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLREL 301 (424)
Q Consensus 222 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 301 (424)
++++|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+|.++++|+.+++..+ +. .+...|.++++|+.+
T Consensus 318 ~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 318 SCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 8999999999754 66566778999999999999877 66566778999999999999765 22 334567777777654
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=1.9e-13 Score=128.61 Aligned_cols=136 Identities=18% Similarity=0.152 Sum_probs=71.0
Q ss_pred ccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhh-----cCCcccceeecccCcccc----ccCcccC
Q 042802 66 KKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAI-----GNLSNLLALTLEGNKLTG----PIPITFG 136 (424)
Q Consensus 66 ~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~----~~p~~~~ 136 (424)
++|+.|+|++|.++......+.....+|++|++++|.+.......+ ...++|++|+|++|.++. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4555666665555433222222211355666666665543333332 234556666666666543 1223334
Q ss_pred CCCCCCeEEccCCccccc----CChhhcCCcccceEeccCCcCccC----CCccCCCCCCCCEEEccCCCCCC
Q 042802 137 RLQKLQGLDLAFNKLVGS----FPDELCHLARLAEFVILGNKPSGS----IPSCLSNLTSLRSLYLGSNSLKD 201 (424)
Q Consensus 137 ~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~ 201 (424)
.+++|++|+|++|.+... ++..+...++|+.|++++|.++.. +...+..+++|+.|++++|.++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 556666666666665432 234445555666666666666532 22334455677777777777665
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.29 E-value=4.9e-10 Score=106.53 Aligned_cols=271 Identities=12% Similarity=0.130 Sum_probs=139.9
Q ss_pred hhhcCC-CCCEEeccCCcccccCccccCCCCCCCEEEccCCc---cCCCCCcccccccccCCccCceeeccCccCCccCC
Q 042802 8 SITNAS-KLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNS---LTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLP 83 (424)
Q Consensus 8 ~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 83 (424)
+|.+++ .|+.+.+..+ ++.....+|.+|++|+.+.+..|. ++.++. .+|..+.+|+.+.+..+ ++....
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~-----~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGR-----QAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECT-----TTTTTCTTCCBCGGGTT-CSEECT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEech-----hhchhcccceeeccCCc-cceehh
Confidence 455553 4777777654 555566777788888888776653 444432 56777777777766544 332333
Q ss_pred hhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCc
Q 042802 84 SSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLA 163 (424)
Q Consensus 84 ~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 163 (424)
..+..+ .+|+.+.+..+ +.......|.++.+|+.+.+..+ ++..-..+|.. ..|+.+.+..+-.. .....|..+.
T Consensus 131 ~aF~~c-~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~ 205 (394)
T 4gt6_A 131 EAFHHC-EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECF 205 (394)
T ss_dssp TTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCT
T ss_pred hhhhhh-cccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhcc
Confidence 444554 46777777543 33344456666677777766543 33233333432 44666655433211 2233344444
Q ss_pred ccceEeccCCcCc------------------------------------cCCCccCCCCCCCCEEEccCCCCCCceeeec
Q 042802 164 RLAEFVILGNKPS------------------------------------GSIPSCLSNLTSLRSLYLGSNSLKDILFFDF 207 (424)
Q Consensus 164 ~L~~L~l~~n~~~------------------------------------~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l 207 (424)
.++......+... .....+|..+..|+.+.+..+.. .
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~------ 278 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-S------ 278 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-E------
T ss_pred ccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-e------
Confidence 4444433222111 11122344444444444433211 0
Q ss_pred cCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCC
Q 042802 208 SSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGP 287 (424)
Q Consensus 208 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 287 (424)
.-...+.+++.|+.+.+.. .+.......|.++.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++..
T Consensus 279 -------I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I 348 (394)
T 4gt6_A 279 -------IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKI 348 (394)
T ss_dssp -------ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBC
T ss_pred -------ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEE
Confidence 0122345556666666642 333344455666666666666543 43334455666666666666433 4434
Q ss_pred CcccccCCCCCCEEEccccc
Q 042802 288 IPTSMEKLVYLRELNLSFNK 307 (424)
Q Consensus 288 ~~~~l~~l~~L~~L~l~~n~ 307 (424)
...+|.++.+|+.+++.++.
T Consensus 349 ~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 349 PESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CGGGGTTCTTCCEEEESSCH
T ss_pred hHhHhhCCCCCCEEEECCce
Confidence 44566666666666665543
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=2.6e-13 Score=127.76 Aligned_cols=172 Identities=17% Similarity=0.160 Sum_probs=126.3
Q ss_pred CccCceeeccCccCCccCChhHHhc----ccccceeEeecCcCcccchhhh-cCCcccceeecccCccccccCccc----
Q 042802 65 CKKLRNINLIGNPLDGFLPSSIGNL----SMSLKTLIIANCSIIGNIRRAI-GNLSNLLALTLEGNKLTGPIPITF---- 135 (424)
Q Consensus 65 l~~L~~L~l~~n~~~~~~~~~~~~l----~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~p~~~---- 135 (424)
++.|+.|++++|.++......+... +.+|++|++++|.+.......+ ..+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678999999999886555555443 2489999999999865444333 346789999999999875433333
Q ss_pred -CCCCCCCeEEccCCccccc----CChhhcCCcccceEeccCCcCccC----CCccCCCCCCCCEEEccCCCCCCceeee
Q 042802 136 -GRLQKLQGLDLAFNKLVGS----FPDELCHLARLAEFVILGNKPSGS----IPSCLSNLTSLRSLYLGSNSLKDILFFD 206 (424)
Q Consensus 136 -~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~i~~l~ 206 (424)
...++|++|+|++|.+... ++..+...++|++|++++|.+... ++..+...++|+.|++++|.++....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~-- 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA-- 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH--
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH--
Confidence 3468899999999998642 445567889999999999998743 34556777899999999998875210
Q ss_pred ccCCcccccccccccccCcccEEECccCcccccCchhhc
Q 042802 207 FSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIV 245 (424)
Q Consensus 207 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 245 (424)
..++..+...++|++|+|++|.++......+.
T Consensus 229 -------~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 229 -------LALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp -------HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred -------HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 12445666788999999999999866555443
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=3.4e-10 Score=107.64 Aligned_cols=271 Identities=11% Similarity=0.132 Sum_probs=173.3
Q ss_pred hhhhcCCCCCEEeccCCc---ccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCC
Q 042802 7 SSITNASKLTVLELGGNT---FSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLP 83 (424)
Q Consensus 7 ~~~~~~~~L~~L~l~~n~---~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 83 (424)
.+|.+|++|+.+.+..|. ++.....+|.++.+|+.+.+..+ ++.++. .+|..+.+|+.+.+..+ +.....
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~-----~aF~~c~~L~~i~lp~~-~~~I~~ 153 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS-----EAFHHCEELDTVTIPEG-VTSVAD 153 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT-----TTTTTCTTCCEEECCTT-CCEECT
T ss_pred HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh-----hhhhhhcccccccccce-eeeecc
Confidence 467889999999998763 66566778889999998887554 455543 56788888888888644 332333
Q ss_pred hhHHhcccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCC--------------
Q 042802 84 SSIGNLSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFN-------------- 149 (424)
Q Consensus 84 ~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n-------------- 149 (424)
..+..+ ..|+.+.+..+ +......+|.+ .+|+.+.+..+-.. ....+|..+.+++......+
T Consensus 154 ~~F~~c-~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 229 (394)
T 4gt6_A 154 GMFSYC-YSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSA 229 (394)
T ss_dssp TTTTTC-TTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECT
T ss_pred cceecc-cccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccccccceeecccc
Confidence 445554 47777777644 33333444433 45666666543322 33344555555554433211
Q ss_pred ----------------------cccccCChhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCCceeeec
Q 042802 150 ----------------------KLVGSFPDELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKDILFFDF 207 (424)
Q Consensus 150 ----------------------~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~l~l 207 (424)
.+.......|..+..|+.+.+.++.. .....+|.++++|+.+.+.. .++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I----- 302 (394)
T 4gt6_A 230 NGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITEL----- 302 (394)
T ss_dssp TSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEE-----
T ss_pred cccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCcccccccccccccCCC-ccccc-----
Confidence 11112234677788889888865433 34556788999999998863 33332
Q ss_pred cCCcccccccccccccCcccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCC
Q 042802 208 SSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGP 287 (424)
Q Consensus 208 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 287 (424)
-...|.++.+|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++..-..+|.++++|+.+++.++....
T Consensus 303 --------~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~- 371 (394)
T 4gt6_A 303 --------PESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW- 371 (394)
T ss_dssp --------CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-
T ss_pred --------CceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-
Confidence 2346788899999999865 55466678999999999999765 665667889999999999999875431
Q ss_pred CcccccCCCCCCEEEcccccC
Q 042802 288 IPTSMEKLVYLRELNLSFNKL 308 (424)
Q Consensus 288 ~~~~l~~l~~L~~L~l~~n~l 308 (424)
..+.....|+.+.+..+.+
T Consensus 372 --~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 372 --NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp --HTCBCCCCC----------
T ss_pred --hhhhccCCCCEEEeCCCCE
Confidence 3566777888887766544
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=3.8e-11 Score=112.21 Aligned_cols=107 Identities=21% Similarity=0.194 Sum_probs=92.7
Q ss_pred EEECccC-cccccCchhhccCcCccEeeccC-ccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEccc
Q 042802 228 RINLSKN-NLSGDIPATIVGLKDLQFMDLAY-NRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSF 305 (424)
Q Consensus 228 ~L~l~~n-~l~~~~p~~~~~l~~L~~L~ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 305 (424)
.++.+++ .++ .+|. +..+.+|+.|+|++ |.+++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677787 787 5777 99999999999996 999988888999999999999999999998889999999999999999
Q ss_pred ccCcccCCCCCcccccccccccCCcCCcCCC
Q 042802 306 NKLEGEIPSGGIFTSFIAESFMGNELLCGLP 336 (424)
Q Consensus 306 n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 336 (424)
|++++..+.......+..+.+.+|++.|++.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 9999655544333448899999999998753
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=3.7e-08 Score=92.98 Aligned_cols=277 Identities=12% Similarity=0.074 Sum_probs=142.5
Q ss_pred hhcCCCCCEEeccCCcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHh
Q 042802 9 ITNASKLTVLELGGNTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGN 88 (424)
Q Consensus 9 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 88 (424)
+....+|+.+.+.. .++.....+|.+|.+|+.+++.. .++.++. .+|.++ +|+.+.+..+ ++......|.
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~-----~aF~~c-~l~~i~~~~~-l~~I~~~aF~- 111 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS-TVTSIGD-----GAFADT-KLQSYTGMER-VKKFGDYVFQ- 111 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT-TCCEECT-----TTTTTC-CCCEEEECTT-CCEECTTTTT-
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC-cceEech-----hhhcCC-CCceEECCce-eeEeccceec-
Confidence 44567889998875 45656677899999999999965 4666643 567776 5777766543 4422233333
Q ss_pred cccccceeEeecCcCcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccc------------cCC
Q 042802 89 LSMSLKTLIIANCSIIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVG------------SFP 156 (424)
Q Consensus 89 l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~------------~~~ 156 (424)
. .+|+.+.+..+ +.......|.+. +++.+.+.. .++......+..+..++.+.+..+.... ...
T Consensus 112 ~-~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (379)
T 4h09_A 112 G-TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL 187 (379)
T ss_dssp T-CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE
T ss_pred c-CCcccccCCCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceeccccccee
Confidence 3 37888888754 323333445443 455555543 2333444556667777766655432210 001
Q ss_pred hhhcCCcccceEeccCCcCccCCCccCCCCCCCCEEEccCCCCCC-----------ceeeeccCCcccccccccccccCc
Q 042802 157 DELCHLARLAEFVILGNKPSGSIPSCLSNLTSLRSLYLGSNSLKD-----------ILFFDFSSNFLVGPLSLDIGNLKV 225 (424)
Q Consensus 157 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-----------i~~l~l~~n~~~~~~~~~l~~l~~ 225 (424)
..+.....+..+.+.... .......+..+.+|+.+.+..+- .. ++.+.+..+ +...-...+.++.+
T Consensus 188 ~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 188 ESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA 264 (379)
T ss_dssp EECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT
T ss_pred ccccccccccccccccce-eEEeecccccccccceeeeccce-eEEccccccCCccceEEEcCCC-ccEeCccccceeeh
Confidence 112222223333222211 11122233444444444443221 00 111111111 11111234555566
Q ss_pred ccEEECccCcccccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcc
Q 042802 226 LVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLS 304 (424)
Q Consensus 226 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 304 (424)
|+.+.+..+ +.......|.++.+|+.+.+.++.++.....+|.++.+|+.+.|..+ ++.....+|.++.+|+.+.+.
T Consensus 265 l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 265 LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 666666543 33344455666677777777666666555566667777777776543 443334566666666666553
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=3.1e-09 Score=99.15 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=50.1
Q ss_pred cCcccEEECccCcccccCchhhc---cCcCccEeeccCccccccc----hhhhcCCCCCCEEECcCCCCCCCCcccccC-
Q 042802 223 LKVLVRINLSKNNLSGDIPATIV---GLKDLQFMDLAYNRSEGPI----PELFGDLTSLEVLNLSKNKISGPIPTSMEK- 294 (424)
Q Consensus 223 l~~L~~L~l~~n~l~~~~p~~~~---~l~~L~~L~ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~- 294 (424)
+++|+.|.+.+|.+....+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|+|++|.++......+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 56677777776666543333332 4667788888777776532 223344678888888888776443333332
Q ss_pred CCCCCEEEccccc
Q 042802 295 LVYLRELNLSFNK 307 (424)
Q Consensus 295 l~~L~~L~l~~n~ 307 (424)
+ ...+++++++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3567777766
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=1.7e-09 Score=100.86 Aligned_cols=167 Identities=16% Similarity=0.132 Sum_probs=100.9
Q ss_pred cccCCCCCCCEEEccCCccCCCCCcc----cccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCccc
Q 042802 31 NTIGNLRNHEWLNLANNSLTSSTSKL----SFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGN 106 (424)
Q Consensus 31 ~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~ 106 (424)
.+...+++|+.|.+.+.........+ .+...+..+++|+.|++++|.-. .++. + .+ ++|++|++..|.+...
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~-~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PR-PNLKSLEIISGGLPDS 208 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BC-TTCSEEEEECSBCCHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cC-CCCcEEEEecCCCChH
Confidence 33455677777777654332110000 01133456678888888776311 2333 2 24 4788888888777554
Q ss_pred chhhhc--CCcccceeeccc--Cccccc-----cCccc--CCCCCCCeEEccCCcccccCChhhc---CCcccceEeccC
Q 042802 107 IRRAIG--NLSNLLALTLEG--NKLTGP-----IPITF--GRLQKLQGLDLAFNKLVGSFPDELC---HLARLAEFVILG 172 (424)
Q Consensus 107 ~~~~l~--~l~~L~~L~l~~--n~l~~~-----~p~~~--~~l~~L~~L~L~~n~~~~~~~~~l~---~l~~L~~L~l~~ 172 (424)
....+. .+++|++|+|+. |...+. +...+ ..+++|+.|+|.+|.+....+..+. .+++|+.|+++.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 444444 678888888753 221111 11122 3478999999998887644333333 478899999999
Q ss_pred CcCccC----CCccCCCCCCCCEEEccCCCCCC
Q 042802 173 NKPSGS----IPSCLSNLTSLRSLYLGSNSLKD 201 (424)
Q Consensus 173 n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~ 201 (424)
|.+... ++..+..+++|+.|+++.|.+++
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 888753 33344567899999999988775
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.77 E-value=7.7e-07 Score=83.86 Aligned_cols=258 Identities=10% Similarity=0.063 Sum_probs=168.7
Q ss_pred ccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCChhHHhcccccceeEeecCcCcccchhhh
Q 042802 32 TIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLPSSIGNLSMSLKTLIIANCSIIGNIRRAI 111 (424)
Q Consensus 32 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l 111 (424)
++....+|+.+.+.. .++.+++ .+|.+|.+|+.+++..+ ++..-...|..+ +|+.+.+..+ +......+|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~-----~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c--~l~~i~~~~~-l~~I~~~aF 110 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGE-----ANFNSCYNMTKVTVAST-VTSIGDGAFADT--KLQSYTGMER-VKKFGDYVF 110 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECT-----TTTTTCTTCCEEEECTT-CCEECTTTTTTC--CCCEEEECTT-CCEECTTTT
T ss_pred ccccccCCEEEEeCC-CccChHH-----HHhhCCCCCCEEEeCCc-ceEechhhhcCC--CCceEECCce-eeEecccee
Confidence 355667899999964 5667654 78999999999999754 664444556553 6888888744 444445566
Q ss_pred cCCcccceeecccCccccccCcccCCCCCCCeEEccCCcccccCChhhcCCcccceEeccCCcCc------------cCC
Q 042802 112 GNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAFNKLVGSFPDELCHLARLAEFVILGNKPS------------GSI 179 (424)
Q Consensus 112 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~------------~~~ 179 (424)
.. .+|+.+.+..+ +.......|..+ +++.+.+..+ +.......|..+..++.+.+..+... ...
T Consensus 111 ~~-~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (379)
T 4h09_A 111 QG-TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTI 186 (379)
T ss_dssp TT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSE
T ss_pred cc-CCcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccce
Confidence 65 48999999865 332444556555 5666666543 33344556777888888776654322 112
Q ss_pred CccCCCCCCCCEEEccCCC----------CCCceeeeccCCcccccccccccccCcccEEECccCcccccCchhhccCcC
Q 042802 180 PSCLSNLTSLRSLYLGSNS----------LKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGDIPATIVGLKD 249 (424)
Q Consensus 180 ~~~l~~l~~L~~L~l~~n~----------l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 249 (424)
...+..+..+..+.+.... ...+....+..+ +...-...+.++..|+.+.+..+ ++......|.++.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 187 LESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA 264 (379)
T ss_dssp EEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT
T ss_pred eccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeeh
Confidence 2234455566666554321 111233333222 22222345667788888888765 55456677888899
Q ss_pred ccEeeccCccccccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccc
Q 042802 250 LQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFN 306 (424)
Q Consensus 250 L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 306 (424)
|+.+.+..+ +.......|..+.+|+.+.+.++.+.......|.++.+|+.+++.++
T Consensus 265 l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 265 LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 999998754 44455567889999999999998888666778999999999998643
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=1.1e-08 Score=86.20 Aligned_cols=122 Identities=16% Similarity=0.207 Sum_probs=80.9
Q ss_pred CccccCCCCCCCEEEccCC-ccCCCCCcccccccccCCccCceeeccCccCCccC----ChhHHhcccccceeEeecCcC
Q 042802 29 IPNTIGNLRNHEWLNLANN-SLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFL----PSSIGNLSMSLKTLIIANCSI 103 (424)
Q Consensus 29 ~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~~L~~L~l~~n~l 103 (424)
+...+...++|++|+|++| .+.... ...+...+...++|++|+|++|.+.... .+.+... .+|++|+|++|.+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g-~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n-~~L~~L~L~~N~i 105 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPT-LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN-NTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHH-HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC-SSCCEEECCSSCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHH-HHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhC-CCcCEEECcCCcC
Confidence 3445566778888888877 665431 1112245566778888888888776432 3334443 3788888888888
Q ss_pred ccc----chhhhcCCcccceeec--ccCccccc----cCcccCCCCCCCeEEccCCccc
Q 042802 104 IGN----IRRAIGNLSNLLALTL--EGNKLTGP----IPITFGRLQKLQGLDLAFNKLV 152 (424)
Q Consensus 104 ~~~----~~~~l~~l~~L~~L~l--~~n~l~~~----~p~~~~~l~~L~~L~L~~n~~~ 152 (424)
... +...+...+.|++|++ ++|.+... +...+...+.|++|++++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 643 3455667778888988 77888743 3344556688999999988775
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=5e-08 Score=82.08 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=68.8
Q ss_pred CCCCCCCCEEEccCC-CCCCceeeeccCCcccccccccccccCcccEEECccCccccc----CchhhccCcCccEeeccC
Q 042802 183 LSNLTSLRSLYLGSN-SLKDILFFDFSSNFLVGPLSLDIGNLKVLVRINLSKNNLSGD----IPATIVGLKDLQFMDLAY 257 (424)
Q Consensus 183 l~~l~~L~~L~l~~n-~l~~i~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~ 257 (424)
+...+.|++|++++| .++... ...+...+...++|++|+|++|.+... +...+...++|++|+|++
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g---------~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPT---------LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHH---------HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HhcCCCCCEEEecCCCCCCHHH---------HHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 444555666666665 554310 001223344456667777777766532 223344456777777777
Q ss_pred cccccc----chhhhcCCCCCCEEEC--cCCCCCCC----CcccccCCCCCCEEEcccccCc
Q 042802 258 NRSEGP----IPELFGDLTSLEVLNL--SKNKISGP----IPTSMEKLVYLRELNLSFNKLE 309 (424)
Q Consensus 258 n~l~~~----~~~~l~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~ 309 (424)
|.+... +...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 777643 3455666677888888 67777643 2344555677888888877764
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=1.2e-07 Score=83.97 Aligned_cols=62 Identities=24% Similarity=0.373 Sum_probs=28.0
Q ss_pred cCcccEEECccCcccc--cCchhhccCcCccEeeccCccccccchhhhcCCC--CCCEEECcCCCCCC
Q 042802 223 LKVLVRINLSKNNLSG--DIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLT--SLEVLNLSKNKISG 286 (424)
Q Consensus 223 l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~ 286 (424)
+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|+|++|++.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 4445555555555543 2233344455555555555555432 1122222 45555555555544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=2.4e-07 Score=81.98 Aligned_cols=108 Identities=22% Similarity=0.246 Sum_probs=64.1
Q ss_pred hhcCCCCCE--EeccCCccc---ccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccCccCCccCC
Q 042802 9 ITNASKLTV--LELGGNTFS---GFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFLP 83 (424)
Q Consensus 9 ~~~~~~L~~--L~l~~n~~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 83 (424)
|...+.|+. ++++.|... ..+.....++++|+.|+|++|.+++++. +...+..+++|+.|+|++|.+.+.
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~---l~~~~~~l~~L~~L~Ls~N~i~~~-- 211 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDD---MSSIVQKAPNLKILNLSGNELKSE-- 211 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGG---GTTHHHHSTTCCEEECTTSCCCSG--
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCcc---chhHHhhCCCCCEEECCCCccCCc--
Confidence 444444554 566666332 2122222457778888888887777531 113445677788888888877743
Q ss_pred hhHHhccc--ccceeEeecCcCcccch-------hhhcCCcccceeec
Q 042802 84 SSIGNLSM--SLKTLIIANCSIIGNIR-------RAIGNLSNLLALTL 122 (424)
Q Consensus 84 ~~~~~l~~--~L~~L~l~~n~l~~~~~-------~~l~~l~~L~~L~l 122 (424)
..+..+ . +|++|++.+|.+.+.+| ..+..+++|+.||=
T Consensus 212 ~~l~~l-~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 212 RELDKI-KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGGGG-TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhhhhc-ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 233333 2 67888888887765443 23567788887753
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=1.2e-06 Score=72.02 Aligned_cols=85 Identities=14% Similarity=0.169 Sum_probs=50.3
Q ss_pred CCCCEEEccCCccCCCCCcccccccccCCccCceeeccCcc-CCccCChhHHhc---ccccceeEeecCc-Ccccchhhh
Q 042802 37 RNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIGNP-LDGFLPSSIGNL---SMSLKTLIIANCS-IIGNIRRAI 111 (424)
Q Consensus 37 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l---~~~L~~L~l~~n~-l~~~~~~~l 111 (424)
.+|+.||++++.++... +..+..+++|+.|+|++|. ++..--..+..+ +++|++|++++|. ++...-..+
T Consensus 61 ~~L~~LDLs~~~Itd~G-----L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIG-----FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CCEEEEEEESCCCCGGG-----GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred ceEeEEeCcCCCccHHH-----HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 46777777777765532 1445677777777777774 554333344432 1257777777764 554444455
Q ss_pred cCCcccceeecccCc
Q 042802 112 GNLSNLLALTLEGNK 126 (424)
Q Consensus 112 ~~l~~L~~L~l~~n~ 126 (424)
..+++|++|+++++.
T Consensus 136 ~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGCTTCCEEEEESCT
T ss_pred hcCCCCCEEECCCCC
Confidence 566666666666653
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=1.2e-06 Score=71.96 Aligned_cols=82 Identities=15% Similarity=0.084 Sum_probs=37.7
Q ss_pred ccEEECccCcccccCchhhccCcCccEeeccCcc-ccccchhhhcCC----CCCCEEECcCCC-CCCCCcccccCCCCCC
Q 042802 226 LVRINLSKNNLSGDIPATIVGLKDLQFMDLAYNR-SEGPIPELFGDL----TSLEVLNLSKNK-ISGPIPTSMEKLVYLR 299 (424)
Q Consensus 226 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~L~ 299 (424)
|++|++++|.++...-..+..+++|+.|+|++|. ++..--..+..+ ++|++|+|++|. ++...-..+..+++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 4455555554443333334445555555555553 433322333332 245555555553 4433233344555555
Q ss_pred EEEccccc
Q 042802 300 ELNLSFNK 307 (424)
Q Consensus 300 ~L~l~~n~ 307 (424)
+|++++|+
T Consensus 143 ~L~L~~c~ 150 (176)
T 3e4g_A 143 YLFLSDLP 150 (176)
T ss_dssp EEEEESCT
T ss_pred EEECCCCC
Confidence 55555543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.19 E-value=0.00038 Score=58.18 Aligned_cols=89 Identities=13% Similarity=0.121 Sum_probs=49.0
Q ss_pred cccccCcccEEECccCcccccC----chhhccCcCccEeeccCcccccc----chhhhcCCCCCCEEECcCCC---CCC-
Q 042802 219 DIGNLKVLVRINLSKNNLSGDI----PATIVGLKDLQFMDLAYNRSEGP----IPELFGDLTSLEVLNLSKNK---ISG- 286 (424)
Q Consensus 219 ~l~~l~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~---l~~- 286 (424)
.+..-+.|+.|+|++|.+.... ...+..-..|+.|+|++|.|... +...+..-+.|++|+|++|. +..
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 3444556666666666665322 22333456677777777776543 22445555667777776542 221
Q ss_pred ---CCcccccCCCCCCEEEccccc
Q 042802 287 ---PIPTSMEKLVYLRELNLSFNK 307 (424)
Q Consensus 287 ---~~~~~l~~l~~L~~L~l~~n~ 307 (424)
.+...+..-+.|+.|+++.|.
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhCCCcCeEeccCCC
Confidence 123345555667777765543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.14 E-value=0.00014 Score=60.86 Aligned_cols=118 Identities=12% Similarity=0.161 Sum_probs=69.8
Q ss_pred cCCCCCCCEEEccCC-ccCCCCCcccccccccCCccCceeeccCccCCccC----ChhHHhcccccceeEeecCcCcccc
Q 042802 33 IGNLRNHEWLNLANN-SLTSSTSKLSFLSSLANCKKLRNINLIGNPLDGFL----PSSIGNLSMSLKTLIIANCSIIGNI 107 (424)
Q Consensus 33 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~~L~~L~l~~n~l~~~~ 107 (424)
+.+-+.|+.|+|++| .+... ....+...+..-+.|+.|+|++|.+.... .+.+..- ..|++|+|++|.+....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~-ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N-~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKE-RIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETS-PSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHH-HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHC-SSCCEEECCSSBCCHHH
T ss_pred HhcCCCccEEECCCCCCCCHH-HHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcC-CccCeEecCCCcCCHHH
Confidence 345567777777764 55432 11122245666677778888877776432 2333333 46888888888775443
Q ss_pred ----hhhhcCCcccceeecccC---cccc----ccCcccCCCCCCCeEEccCCccc
Q 042802 108 ----RRAIGNLSNLLALTLEGN---KLTG----PIPITFGRLQKLQGLDLAFNKLV 152 (424)
Q Consensus 108 ----~~~l~~l~~L~~L~l~~n---~l~~----~~p~~~~~l~~L~~L~L~~n~~~ 152 (424)
.+++..-..|++|+|++| .+.. .+...+..-+.|+.|+++.|...
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 234445566888888754 3332 13344556678888888776543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.89 E-value=0.0017 Score=50.54 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=32.1
Q ss_pred EeeccCcccc-ccchhhhcCCCCCCEEECcCCCCCCCCcccccCCCCCCEEEcccccCcc
Q 042802 252 FMDLAYNRSE-GPIPELFGDLTSLEVLNLSKNKISGPIPTSMEKLVYLRELNLSFNKLEG 310 (424)
Q Consensus 252 ~L~ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 310 (424)
.++-+++.++ ..+|..+ .++|+.|+|++|.++...+..|..+++|+.|+|++|++..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 4555555554 2333322 2356666666666665555556666666666666666654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.30 E-value=0.0057 Score=47.49 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=38.0
Q ss_pred EEECccCccc-ccCchhhccCcCccEeeccCccccccchhhhcCCCCCCEEECcCCCCCC
Q 042802 228 RINLSKNNLS-GDIPATIVGLKDLQFMDLAYNRSEGPIPELFGDLTSLEVLNLSKNKISG 286 (424)
Q Consensus 228 ~L~l~~n~l~-~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 286 (424)
.++-+++.++ ..+|..+ .++|+.|+|++|+|+...+..|..+++|+.|+|++|++.-
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 4555555554 2344332 2457788888888876666677788888888888888763
No 165
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=86.96 E-value=0.54 Score=28.03 Aligned_cols=6 Identities=17% Similarity=0.163 Sum_probs=2.7
Q ss_pred hhHHHH
Q 042802 362 VIVFPL 367 (424)
Q Consensus 362 ~i~~~~ 367 (424)
++++++
T Consensus 16 ~~vVGv 21 (44)
T 2jwa_A 16 SAVVGI 21 (44)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 166
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=79.62 E-value=1.5 Score=25.33 Aligned_cols=19 Identities=11% Similarity=0.321 Sum_probs=9.1
Q ss_pred eeeehhHHHHHHHHHHHHH
Q 042802 358 ILLIVIVFPLSIALTIAIT 376 (424)
Q Consensus 358 ~~~~~i~~~~~~~~~~~~~ 376 (424)
..++.+++++++.++++..
T Consensus 11 GaIAGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 11 GEIVAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred CceeeeehHHHHHHHHHHH
Confidence 3444555555544443333
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=71.91 E-value=5.4 Score=28.77 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=30.9
Q ss_pred CcccccCccccCCCCCCCEEEccCCccCCCCCcccccccccCCccCceeeccC
Q 042802 23 NTFSGFIPNTIGNLRNHEWLNLANNSLTSSTSKLSFLSSLANCKKLRNINLIG 75 (424)
Q Consensus 23 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 75 (424)
..++.....+|.+|++|+.+.+-. .++.+.. .+|.+|.+|+.+.+.+
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~-----~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQP-NIGLLYD-----GMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECT-TSSCCCT-----TSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCC-chheEcH-----HHHhccCCccEEEEcC
Confidence 344555566777788888877754 3555533 5677777777777754
No 168
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=64.66 E-value=18 Score=25.97 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=25.1
Q ss_pred CcccchhhhcCCcccceeecccCccccccCcccCCCCCCCeEEccC
Q 042802 103 IIGNIRRAIGNLSNLLALTLEGNKLTGPIPITFGRLQKLQGLDLAF 148 (424)
Q Consensus 103 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~ 148 (424)
++.+...+|.++.+|+.+.+-.+ ++..-..+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444455666666666666542 3334445566666666666654
No 169
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=30.30 E-value=44 Score=22.73 Aligned_cols=8 Identities=13% Similarity=0.235 Sum_probs=3.0
Q ss_pred hHHHHHHH
Q 042802 363 IVFPLSIA 370 (424)
Q Consensus 363 i~~~~~~~ 370 (424)
++.+++++
T Consensus 13 Iv~gvi~g 20 (79)
T 2knc_B 13 VLLSVMGA 20 (79)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 33333333
No 170
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=25.32 E-value=1.1e+02 Score=17.91 Aligned_cols=6 Identities=0% Similarity=-0.247 Sum_probs=2.2
Q ss_pred HHHHHH
Q 042802 364 VFPLSI 369 (424)
Q Consensus 364 ~~~~~~ 369 (424)
++++++
T Consensus 14 i~s~l~ 19 (42)
T 2k1a_A 14 LVGVLG 19 (42)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
Done!