BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042804
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B
Length = 853
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 70/98 (71%)
Query: 149 CNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDY 208
CNSW+ + RIFFAN +YLPS TP L + R +EL++++GDG G R+ DRIYDY
Sbjct: 141 CNSWVYNSKHYKTDRIFFANNTYLPSETPAPLVKYREEELKNVRGDGTGERKEWDRIYDY 200
Query: 209 DVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRS 246
DVYNDLG+P+K K RPVLGG PYPRR RTGR ++
Sbjct: 201 DVYNDLGDPDKGEKYARPVLGGSALPYPRRGRTGRGKT 238
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement
Length = 839
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
CNSW+ + RIFFAN +Y+PS TP L R +EL+ L+G+G G R+ DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
YDVYNDLGNP+K KL RPVLGG +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant
Length = 839
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
CNSW+ + RIFFAN +Y+PS TP L R +EL+ L+G+G G R+ DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
YDVYNDLGNP+K KL RPVLGG +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant
Length = 839
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
CNSW+ + RIFFAN +Y+PS TP L R +EL+ L+G+G G R+ DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
YDVYNDLGNP+K KL RPVLGG +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant
Length = 839
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
CNSW+ + RIFFAN +Y+PS TP L R +EL+ L+G+G G R+ DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
YDVYNDLGNP+K KL RPVLGG +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant
Length = 839
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
CNSW+ + RIFFAN +Y+PS TP L R +EL+ L+G+G G R+ DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
YDVYNDLGNP+K KL RPVLGG +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
Length = 839
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
CNSW+ + RIFFAN +Y+PS TP L R +EL+ L+G+G G R+ DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
YDVYNDLGNP+K KL RPVLGG +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant
Length = 839
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
CNSW+ + RIFFAN +Y+PS TP L R +EL+ L+G+G G R+ DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
YDVYNDLGNP+K KL RPVLGG +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
Length = 839
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
CNSW+ + RIFFAN +Y+PS TP L R +EL+ L+G+G G R+ DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
YDVYNDLGNP+K KL RPVLGG +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant
Length = 839
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
CNSW+ + RIFFAN +Y+PS TP L R +EL+ L+G+G G R+ DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
YDVYNDLGNP+K KL RPVLGG +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant
Length = 839
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
CNSW+ + RIFFAN +Y+PS TP L R +EL+ L+G+G G R+ DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
YDVYNDLGNP+K KL RPVLGG +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant
Length = 839
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
CNSW+ + RIFFAN +Y+PS TP L R +EL+ L+G+G G R+ DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
YDVYNDLGNP+K KL RPVLGG +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
pdb|1F8N|A Chain A, Lipoxygenase-1 (Soybean) At 100k, New Refinement
pdb|1YGE|A Chain A, Lipoxygenase-1 (Soybean) At 100k
pdb|2SBL|A Chain A, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
Length = 839
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
CNSW+ + RIFFAN +Y+PS TP L R +EL+ L+G+G G R+ DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
YDVYNDLGNP+K KL RPVLGG +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
Length = 857
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
CNSW+ + RIFFAN++YLPS TP L + R +EL +L+GDG G R+ +RIYD
Sbjct: 144 VCNSWIYNAKLFKSDRIFFANQTYLPSETPAPLVKYREEELHNLRGDGTGERKEWERIYD 203
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
YDVYNDLG+P+K RPVLGG + +PYPRR RTGR
Sbjct: 204 YDVYNDLGDPDKGENHARPVLGGNDTFPYPRRGRTGR 240
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
9(Z),11(E)-Octadecadienoic Acid
pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
Methoxy-Phenol
pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
(Egc)
pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
4-nitrocatechol At 2.15 Angstrom Resolution
pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
2.0 A Resolution
pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
CNSW+ + RIFFAN++YLPS TP L + R +EL +L+GDG G R+ +RIYD
Sbjct: 144 VCNSWIYNAKLFKSDRIFFANQTYLPSETPAPLVKYREEELHNLRGDGTGERKEWERIYD 203
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
YDVYNDLG+P+K RPVLGG + +PYPRR RTGR
Sbjct: 204 YDVYNDLGDPDKGENHARPVLGGNDTFPYPRRGRTGR 240
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D
pdb|2IUK|B Chain B, Crystal Structure Of Soybean Lipoxygenase-D
Length = 864
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 146 EITCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRI 205
E CNSW+ RIFF N +YLPSATP L + R++E L+GDG G R+ DRI
Sbjct: 150 EFVCNSWVYNFRSYKKNRIFFVNDTYLPSATPAPLLKYRKEEFEVLRGDGTGKRKDFDRI 209
Query: 206 YDYDVYNDLGNPE-KDPKLKRPVLGGKE-YPYPRRCRTGRPRS 246
YDYDVYNDLGNP+ DP RP+LGG YPYP R RTGR R+
Sbjct: 210 YDYDVYNDLGNPDGGDP---RPILGGCSIYPYPLRVRTGRERT 249
>pdb|1DTN|A Chain A, Mandelate Racemase Mutant D270n Co-crystallized With
(s)-atrolactate
Length = 359
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 126 NDKEGNYLYESKFNVPFDFGEITCNSWLQPKE 157
+D EG+ +SK NVP GE +WL P+E
Sbjct: 227 HDYEGHQRIQSKLNVPVQMGE----NWLGPEE 254
>pdb|1MDL|A Chain A, Mandelate Racemase Mutant K166r Co-Crystallized With (R)-
Mandelate
Length = 359
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 126 NDKEGNYLYESKFNVPFDFGEITCNSWLQPKE 157
+D EG+ +SK NVP GE +WL P+E
Sbjct: 227 HDYEGHQRIQSKLNVPVQMGE----NWLGPEE 254
>pdb|1MDR|A Chain A, The Role Of Lysine 166 In The Mechanism Of Mandelate
Racemase From Pseudomonas Putida: Mechanistic And
Crystallographic Evidence For Stereospecific Alkylation
By (r)-alpha-phenylglycidate
Length = 359
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 126 NDKEGNYLYESKFNVPFDFGEITCNSWLQPKE 157
+D EG+ +SK NVP GE +WL P+E
Sbjct: 227 HDYEGHQRIQSKLNVPVQMGE----NWLGPEE 254
>pdb|1MRA|A Chain A, Mandelate Racemase Mutant D270n Co-Crystallized With
(S)-Atrolactate
Length = 359
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 126 NDKEGNYLYESKFNVPFDFGEITCNSWLQPKE 157
+D EG+ +SK NVP GE +WL P+E
Sbjct: 227 HDYEGHQRIQSKLNVPVQMGE----NWLGPEE 254
>pdb|1MNS|A Chain A, On The Role Of Lysine 166 In The Mechanism Of Mandelate
Racemase From Pseudomonas Putida: Mechanistic And
Crystallographic Evidence For Stereospecific Alkylation
By (R)-Alpha-Phenylglycidate
pdb|2MNR|A Chain A, Mechanism Of The Reaction Catalyzed By Mandelate Racemase.
2. Crystal Structure Of Mandelate Racemase At 2.5
Angstroms Resolution: Identification Of The Active Site
And Possible Catalytic Residues
Length = 357
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 126 NDKEGNYLYESKFNVPFDFGEITCNSWLQPKE 157
+D EG+ +SK NVP GE +WL P+E
Sbjct: 225 HDYEGHQRIQSKLNVPVQMGE----NWLGPEE 252
>pdb|3UXK|A Chain A, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXK|B Chain B, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXK|C Chain C, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXK|D Chain D, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXL|A Chain A, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
pdb|3UXL|B Chain B, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
pdb|3UXL|C Chain C, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
pdb|3UXL|D Chain D, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
Length = 383
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 126 NDKEGNYLYESKFNVPFDFGEITCNSWLQPKE 157
+D EG+ +SK NVP GE +WL P+E
Sbjct: 251 HDYEGHQRIQSKLNVPVQMGE----NWLGPEE 278
>pdb|3MC8|A Chain A, Potra1-3 Of The Periplasmic Domain Of Omp85 From Anabaena
pdb|3MC9|A Chain A, Potra1-2 Of The Periplasmic Domain Of Omp85 From Anabaena
pdb|3MC9|B Chain B, Potra1-2 Of The Periplasmic Domain Of Omp85 From Anabaena
Length = 316
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 170 SYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD--YDVYNDLGNPE 218
S LP AT D + R + ++ +L+ G+++L+ R D Y + N +G P+
Sbjct: 155 SVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQ 205
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 150 NSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQE 187
NS+ KEE I F NKS TPD LK+ ++ E
Sbjct: 87 NSYF--KEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE 122
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 150 NSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQE 187
NS+ KEE I F NKS TPD LK+ ++ E
Sbjct: 87 NSYF--KEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,990,405
Number of Sequences: 62578
Number of extensions: 356481
Number of successful extensions: 612
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 25
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)