Query 042804
Match_columns 251
No_of_seqs 146 out of 275
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 09:39:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02264 lipoxygenase 100.0 1.3E-79 2.9E-84 622.9 16.6 190 53-251 83-307 (919)
2 PLN02337 lipoxygenase 100.0 2.4E-79 5.2E-84 620.5 15.9 189 55-251 19-246 (866)
3 PLN02305 lipoxygenase 100.0 4.8E-79 1E-83 618.8 16.4 188 55-251 82-303 (918)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 5.5E-41 1.2E-45 335.4 2.5 74 177-250 1-75 (667)
5 cd01751 PLAT_LH2 PLAT/ LH2 dom 100.0 3.2E-32 6.9E-37 227.1 8.7 100 56-168 2-137 (137)
6 smart00308 LH2 Lipoxygenase ho 97.3 0.00054 1.2E-08 52.9 5.7 43 96-146 20-63 (105)
7 PF01477 PLAT: PLAT/LH2 domain 96.9 0.0014 3.1E-08 50.3 4.1 20 147-166 94-113 (113)
8 cd00113 PLAT PLAT (Polycystin- 94.2 0.052 1.1E-06 42.4 3.4 20 147-166 97-116 (116)
9 TIGR03124 ctirate_citX holo-AC 69.0 2.2 4.8E-05 37.1 0.9 28 203-239 106-133 (165)
10 cd01756 PLAT_repeat PLAT/LH2 d 49.2 78 0.0017 25.2 6.6 20 147-166 98-118 (120)
11 PF03802 CitX: Apo-citrate lya 47.1 10 0.00022 32.9 1.3 32 199-239 104-135 (170)
12 COG1482 ManA Phosphomannose is 40.7 7.8 0.00017 37.1 -0.4 36 171-216 169-207 (312)
13 PRK01392 citX 2'-(5''-triphosp 23.5 32 0.00069 30.4 0.5 31 203-239 112-142 (180)
14 cd01757 PLAT_RAB6IP1 PLAT/LH2 22.8 76 0.0016 26.0 2.5 13 147-159 89-101 (114)
15 PF11627 HnRNPA1: Nuclear fact 21.8 63 0.0014 22.2 1.5 21 210-230 3-23 (37)
16 cd01753 PLAT_LOX PLAT domain o 21.0 72 0.0016 25.6 2.0 10 147-156 96-105 (113)
17 cd01752 PLAT_polycystin PLAT/L 20.2 1E+02 0.0022 24.6 2.7 19 147-165 98-117 (120)
No 1
>PLN02264 lipoxygenase
Probab=100.00 E-value=1.3e-79 Score=622.90 Aligned_cols=190 Identities=44% Similarity=0.809 Sum_probs=177.8
Q ss_pred hhcccceeEEeeeeeEEEEeeEEEEeecCCcccccccc-cccCCeeEEEEeeccccCCCCCce----eccCCcccccCCC
Q 042804 53 AVNNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDES-FLFGKSFSLELVSTKLDHKTGSEK----TTKPSHAIRVGND 127 (251)
Q Consensus 53 ~~~~ikg~vv~~~k~~l~~~~~~~v~~~~~~~~~lD~~-dllGk~v~LqLVSa~~d~~tg~gk----a~l~~w~~~~~~~ 127 (251)
+.-+|+|+|++|++++++++++.+ +++|++ |++||+|+|||||++++|+||+|+ ++|++|+++ ..+
T Consensus 83 ~~~~i~~~v~~~~~~~~~~~~~~~--------~~~D~~~~~~G~~v~lqLVSs~~~~~tg~~~~~~~a~l~~~~~~-~~~ 153 (919)
T PLN02264 83 VKFKVRAVVTVRNKNKEDLKETLV--------KHLDAFTDKIGRNVVLELISTQVDPKTKEPKKSKAAVLKDWSKK-SNI 153 (919)
T ss_pred eEEEEEEEEEEEeccccchhhccc--------chhhHHHHHhCCeEEEEEEeccccCCCCCccCCCcchhcccccC-CCC
Confidence 444688888888888888888777 889999 999999999999999999998443 999999987 454
Q ss_pred CCCceEEEEEEEeeCCCCc------------------------------EEeeecccCCCCCCCCeEEEcCCCCCCCCCc
Q 042804 128 KEGNYLYESKFNVPFDFGE------------------------------ITCNSWLQPKEENTPTRIFFANKSYLPSATP 177 (251)
Q Consensus 128 ~~~~~~y~~~F~vd~~fG~------------------------------F~CnSWV~~~~~~~~~RiFFsNk~YLPs~TP 177 (251)
.+++++|+|+|+||++||+ |+|||||||+++|+.+||||+||+|||+|||
T Consensus 154 ~~~~~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~g~v~F~cnSWV~p~~~~~~~RiFF~Nk~YLP~~tP 233 (919)
T PLN02264 154 KAERVHYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPGKRIFFTNQPYLPSETP 233 (919)
T ss_pred CCCceEEEEEEEeccccCCcceEEEEeCCCceEEEEEEEeccCCCCcEEEecCCccccCcCCCCCceEecCCCcCcccCC
Confidence 5888899999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCccccccCCccccccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 042804 178 DGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSELGSV 251 (251)
Q Consensus 178 ~gL~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYNDLG~PD~~~~~~RPvLGG~~~PYPRRcRTGR~pt~tD~~ 251 (251)
+||++|||+||++|||||+||||+|||||||||||||||||++++++||||||++||||||||||||||+|||-
T Consensus 234 ~~l~~~Re~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~dp~ 307 (919)
T PLN02264 234 AGLRALREKELRNLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKKIPYPRRCRTGRLPTDSDMM 307 (919)
T ss_pred HHHHHHHHHHHHHhcCCCCCcCCcccchhhhhhhccCCCCCCCccccCcccCCCCCCCCCCCcCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999779999999999999999983
No 2
>PLN02337 lipoxygenase
Probab=100.00 E-value=2.4e-79 Score=620.53 Aligned_cols=189 Identities=37% Similarity=0.661 Sum_probs=179.8
Q ss_pred cccceeEEeeeeeEEEEeeEEEEeecCCcccccccc-cccCCeeEEEEeeccccC-CCC-Cce----eccCCcccccCCC
Q 042804 55 NNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDES-FLFGKSFSLELVSTKLDH-KTG-SEK----TTKPSHAIRVGND 127 (251)
Q Consensus 55 ~~ikg~vv~~~k~~l~~~~~~~v~~~~~~~~~lD~~-dllGk~v~LqLVSa~~d~-~tg-~gk----a~l~~w~~~~~~~ 127 (251)
.+|||+|++|+|++++++++.+ +++|++ |++||+|+|||||++++| +|| +|| ++|++|+++.+.+
T Consensus 19 ~~~~~~v~l~~k~~ld~~~~~~--------~~lD~~~~l~G~~v~lqLvS~~~~~p~~g~~gk~~k~a~l~~w~~~~~~~ 90 (866)
T PLN02337 19 EKIKGTVVLMKKNVLDFNDFNA--------SVLDRVHELLGKGVSLQLISSTVVDPENGLRGKLGKEAYLEKWITTITSL 90 (866)
T ss_pred ceEEEEEEEEEecccchhhccc--------chhhhHHHhcCCeEEEEEEeccccccccCCccccCCccchhhhccCCCCC
Confidence 4799999999999999999888 899999 999999999999999997 777 443 9999999886665
Q ss_pred CCCceEEEEEEEeeCCCCc-------------------------------EEeeecccCCCCCCCCeEEEcCCCCCCCCC
Q 042804 128 KEGNYLYESKFNVPFDFGE-------------------------------ITCNSWLQPKEENTPTRIFFANKSYLPSAT 176 (251)
Q Consensus 128 ~~~~~~y~~~F~vd~~fG~-------------------------------F~CnSWV~~~~~~~~~RiFFsNk~YLPs~T 176 (251)
.+++++|+|+|+||++||+ |+|||||||+++|+.+||||+||+|||+||
T Consensus 91 ~~~~~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~~~~~~~RiFF~nk~ylp~~t 170 (866)
T PLN02337 91 TAGESAFKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPAKRYRYDRVFFSNKTYLPSQT 170 (866)
T ss_pred CCCceEEEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccCCCCCCCceEecCCCcCcccc
Confidence 6888999999999999999 999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhcCCCccccccCCccccccccccCCCCCCCCCCCCcccCC-CCCCCCCCCCCCCCCCCCCCC
Q 042804 177 PDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGG-KEYPYPRRCRTGRPRSELGSV 251 (251)
Q Consensus 177 P~gL~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYNDLG~PD~~~~~~RPvLGG-~~~PYPRRcRTGR~pt~tD~~ 251 (251)
|+||++|||+||++|||||+||||+|||||||||||||||||++++++|||||| ++|||||||||||+||+|||.
T Consensus 171 P~~l~~~R~~eL~~lrG~g~gerk~~dRiYdyd~YnDlg~pd~~~~~~RpvLGg~~~~pyPRR~rTgr~~t~~dp~ 246 (866)
T PLN02337 171 PAPLRPYREEELVNLRGDGKGELKEWDRVYDYDYYNDLGDPDKGNPYARPVLGGSQEYPYPRRGRTGRKPTKTDPN 246 (866)
T ss_pred cHHHHHHHHHHHHHhcCCCCCCCCcccchhhhhhhccCCCCCCCccccCccCCCCCCCCCCCcccCCCCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999 779999999999999999983
No 3
>PLN02305 lipoxygenase
Probab=100.00 E-value=4.8e-79 Score=618.81 Aligned_cols=188 Identities=42% Similarity=0.815 Sum_probs=178.2
Q ss_pred cccceeEEeeeeeEEEEeeEEEEeecCCcccccccc-cccCCeeEEEEeeccccCCCCCce---eccCCcccccCCCCCC
Q 042804 55 NNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDES-FLFGKSFSLELVSTKLDHKTGSEK---TTKPSHAIRVGNDKEG 130 (251)
Q Consensus 55 ~~ikg~vv~~~k~~l~~~~~~~v~~~~~~~~~lD~~-dllGk~v~LqLVSa~~d~~tg~gk---a~l~~w~~~~~~~~~~ 130 (251)
.+|||+|++|+|++++++++.+ +++|++ |++||+|+|||||++++|+||+|| ++|++|+++ +...++
T Consensus 82 ~~i~~~v~~~~~~~~~~~~~~~--------~~~d~~~~~~g~~v~lqLvS~~~~~~~g~gk~~~~~l~~~~~~-~~~~~~ 152 (918)
T PLN02305 82 IDVRAVITIRKKIKEKITEKFE--------DQWEYFMNGIGQGILIQLVSEEIDPVTGSGKSVESSVRGWLPK-PSNDPH 152 (918)
T ss_pred CeEEEEEEEEeecccchhhccc--------chhhHHHHhhCCeEEEEEEeccccCCCCCcccccchhhccccC-CCCCCC
Confidence 5799999999999999999887 889999 999999999999999999999655 999999987 332277
Q ss_pred ceEEEEEEEeeCCCCc------------------------------EEeeecccCCCCCCCCeEEEcCCCCCCCCCcHHH
Q 042804 131 NYLYESKFNVPFDFGE------------------------------ITCNSWLQPKEENTPTRIFFANKSYLPSATPDGL 180 (251)
Q Consensus 131 ~~~y~~~F~vd~~fG~------------------------------F~CnSWV~~~~~~~~~RiFFsNk~YLPs~TP~gL 180 (251)
+++|+|+|+||++||+ |+|||||||+++|+.+||||+||+|||+|||+||
T Consensus 153 ~~~~~~~f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~l 232 (918)
T PLN02305 153 IVEYAADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGI 232 (918)
T ss_pred ceEEEEEEeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCCCCCceEecCCCcCcccCCHHH
Confidence 8899999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCccccccCCccccccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 042804 181 KRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSELGSV 251 (251)
Q Consensus 181 ~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYNDLG~PD~~~~~~RPvLGG~~~PYPRRcRTGR~pt~tD~~ 251 (251)
++|||+||++|||||+||||+|||||||||||||||||++++++||||||++|||||||||||+||+|||.
T Consensus 233 ~~~Re~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~ 303 (918)
T PLN02305 233 KDLRREDLLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPL 303 (918)
T ss_pred HHHHHHHHHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999669999999999999999983
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=5.5e-41 Score=335.39 Aligned_cols=74 Identities=69% Similarity=1.297 Sum_probs=50.2
Q ss_pred cHHHHHHHHHHHHhhcCCCccccccCCccccccccccCCCCCCCCCCCCcccCC-CCCCCCCCCCCCCCCCCCCC
Q 042804 177 PDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGG-KEYPYPRRCRTGRPRSELGS 250 (251)
Q Consensus 177 P~gL~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYNDLG~PD~~~~~~RPvLGG-~~~PYPRRcRTGR~pt~tD~ 250 (251)
|+||++|||+||++|||||+||||+|||||||||||||||||++++++|||||| ++|||||||||||+|+++||
T Consensus 1 ~~~l~~~R~~eL~~lrG~g~gerk~~dRiYdYd~YnDLG~pd~~~~~~RpvlGgs~~~PYPRR~RTGr~~~~~Dp 75 (667)
T PF00305_consen 1 PAGLKKLREEELKNLRGDGTGERKEWDRIYDYDVYNDLGNPDKGPELARPVLGGSKEFPYPRRCRTGRPPTKTDP 75 (667)
T ss_dssp SGGGHHHHHHHHHHHHTTS-S---TT-----EE-B-SSSBGGGTGCG----BSSSSSS----EE----SBESSCT
T ss_pred ChHHHHHHHHHHHHhcCCCCCccccccceeeeecccCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCc
Confidence 899999999999999999999999999999999999999999999999999999 89999999999999999998
No 5
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=99.97 E-value=3.2e-32 Score=227.10 Aligned_cols=100 Identities=37% Similarity=0.596 Sum_probs=91.0
Q ss_pred ccceeEEeeeeeEEEEeeEEEEeecCCcccccccc-cccCCeeEEEEeeccccCCCCCce----eccCCcccccCCCCCC
Q 042804 56 NIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDES-FLFGKSFSLELVSTKLDHKTGSEK----TTKPSHAIRVGNDKEG 130 (251)
Q Consensus 56 ~ikg~vv~~~k~~l~~~~~~~v~~~~~~~~~lD~~-dllGk~v~LqLVSa~~d~~tg~gk----a~l~~w~~~~~~~~~~ 130 (251)
++||+|++|+++.++++++. +.+|++ |++||+|+|||||+++||+||+|| ++|++|+++. ++
T Consensus 2 ~vka~V~v~~k~~~~~~~~~---------~~~D~~~~llGk~v~lqLVSs~~d~~tg~~k~~~~~~l~~~~~~~----~~ 68 (137)
T cd01751 2 KVKATVTVMKKNKLDLNDDG---------SGLDDLDDLLGRSLLLELVSSELDPKTGKGKKGKAAFLEGWGKSL----AG 68 (137)
T ss_pred EEEEEEEEEEeecccccccc---------chhhhHHHhhCCeEEEEEEEeeecCCCCCcccccceeeecccccC----Cc
Confidence 58999999999988888754 468999 999999999999999999999655 9999998654 66
Q ss_pred ceEEEEEEEeeCCCCc-------------------------------EEeeecccCCCCCCCCeEEEcC
Q 042804 131 NYLYESKFNVPFDFGE-------------------------------ITCNSWLQPKEENTPTRIFFAN 168 (251)
Q Consensus 131 ~~~y~~~F~vd~~fG~-------------------------------F~CnSWV~~~~~~~~~RiFFsN 168 (251)
+++|+++|+||++||+ |+|||||||+++|+.+||||+|
T Consensus 69 e~~y~~~F~v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~~~~~~~RiFFsN 137 (137)
T cd01751 69 ESAYEAEFEVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPKKDYPDKRIFFPN 137 (137)
T ss_pred ceEEEEEEEeecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccCCCCCCCCEEccC
Confidence 7899999999999999 9999999999999999999998
No 6
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=97.31 E-value=0.00054 Score=52.87 Aligned_cols=43 Identities=33% Similarity=0.274 Sum_probs=28.5
Q ss_pred eeEEEEeeccccCCCCCc-eeccCCcccccCCCCCCceEEEEEEEeeCCCCc
Q 042804 96 SFSLELVSTKLDHKTGSE-KTTKPSHAIRVGNDKEGNYLYESKFNVPFDFGE 146 (251)
Q Consensus 96 ~v~LqLVSa~~d~~tg~g-ka~l~~w~~~~~~~~~~~~~y~~~F~vd~~fG~ 146 (251)
+|.|+|++++.+ +|.. ...++.|. . +....|+..|+++.++|+
T Consensus 20 ~V~l~L~g~~~~--s~~~~~~~~~~~~-----f-~~g~~~~f~v~~~~~lG~ 63 (105)
T smart00308 20 SVSLSLVGAEGD--GKESKLDYLFKGI-----F-ARGSTYEFTFDVDEDFGE 63 (105)
T ss_pred eEEEEEEeCCCC--CcceeccccCCcc-----c-cCCceEEEEEecccCCCC
Confidence 699999998865 3321 13444442 2 223478888999999998
No 7
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=96.85 E-value=0.0014 Score=50.31 Aligned_cols=20 Identities=40% Similarity=1.129 Sum_probs=19.6
Q ss_pred EEeeecccCCCCCCCCeEEE
Q 042804 147 ITCNSWLQPKEENTPTRIFF 166 (251)
Q Consensus 147 F~CnSWV~~~~~~~~~RiFF 166 (251)
|+||.||....+++.+||||
T Consensus 94 F~~~~Wl~~~~~~~~~rvf~ 113 (113)
T PF01477_consen 94 FPCNRWLDPDKDYKTERVFF 113 (113)
T ss_dssp EEEEEEESTTEGCSSEEEEE
T ss_pred EEcCCEECCCCCCCCccEEC
Confidence 99999999999999999998
No 8
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=94.21 E-value=0.052 Score=42.44 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=18.5
Q ss_pred EEeeecccCCCCCCCCeEEE
Q 042804 147 ITCNSWLQPKEENTPTRIFF 166 (251)
Q Consensus 147 F~CnSWV~~~~~~~~~RiFF 166 (251)
|.||+||.....++.+|+|.
T Consensus 97 F~~~~Wl~~~~~~~~~r~~~ 116 (116)
T cd00113 97 FPVNRWVLGGKWYTSVRSLK 116 (116)
T ss_pred EEeCCCcccCCCCCceeecC
Confidence 99999999999999999974
No 9
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=68.97 E-value=2.2 Score=37.10 Aligned_cols=28 Identities=46% Similarity=0.934 Sum_probs=19.8
Q ss_pred CccccccccccCCCCCCCCCCCCcccCCCCCCCCCCC
Q 042804 203 DRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRC 239 (251)
Q Consensus 203 DRIYDYdvYNDLG~PD~~~~~~RPvLGG~~~PYPRRc 239 (251)
=|++|.|||+--| ..+.|--|| +| ||||
T Consensus 106 GRL~DlDV~~~~g-----~~iSR~~lg---~~-~R~C 133 (165)
T TIGR03124 106 GRLWDIDVLDADG-----KSLSRTDLG---LP-PRKC 133 (165)
T ss_pred hhheeheeecCCC-----CCcCHHHcC---CC-CCee
Confidence 3999999996333 345677777 55 8888
No 10
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=49.24 E-value=78 Score=25.25 Aligned_cols=20 Identities=30% Similarity=0.806 Sum_probs=14.8
Q ss_pred EEeeecccCCCC-CCCCeEEE
Q 042804 147 ITCNSWLQPKEE-NTPTRIFF 166 (251)
Q Consensus 147 F~CnSWV~~~~~-~~~~RiFF 166 (251)
|+||.|+...+. ..-.|++.
T Consensus 98 F~~~~Wl~~~~~dg~~~r~~~ 118 (120)
T cd01756 98 FPCNRWLDKDEDDGQIVRELY 118 (120)
T ss_pred EEeCCccCCCCCCCEEEEEEE
Confidence 999999998764 23457765
No 11
>PF03802 CitX: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; InterPro: IPR005551 Members of this protein family are annotated as CitX, containing the CitX domain, the domain is also found in the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25 from EC), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.; GO: 0051191 prosthetic group biosynthetic process
Probab=47.11 E-value=10 Score=32.87 Aligned_cols=32 Identities=38% Similarity=0.674 Sum_probs=21.7
Q ss_pred cccCCccccccccccCCCCCCCCCCCCcccCCCCCCCCCCC
Q 042804 199 RQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRC 239 (251)
Q Consensus 199 Rk~~DRIYDYdvYNDLG~PD~~~~~~RPvLGG~~~PYPRRc 239 (251)
.-.+=|++|.|||+.-| ..+.|--||-. ||||
T Consensus 104 ~hplGRL~DiDV~~~~g-----~~iSR~~lg~~----~R~C 135 (170)
T PF03802_consen 104 SHPLGRLFDIDVLDPDG-----KQISREDLGLP----PRRC 135 (170)
T ss_pred cCcchheEEEeeecCCC-----CccCHHHcCCC----CCcc
Confidence 34555999999995433 34568778732 6777
No 12
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=40.72 E-value=7.8 Score=37.12 Aligned_cols=36 Identities=47% Similarity=0.792 Sum_probs=29.3
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCCccccccCC---ccccccccccCCC
Q 042804 171 YLPSATPDGLKRLRRQELRHLQGDGRGVRQLSD---RIYDYDVYNDLGN 216 (251)
Q Consensus 171 YLPs~TP~gL~~lRe~EL~~LRGdG~GeRk~~D---RIYDYdvYNDLG~ 216 (251)
|||+.||-++ ++|.+..--+.+| |+||||-|.|-|+
T Consensus 169 fl~Agt~HA~----------~~G~~lEvmqnSDntyR~yd~~r~~d~~~ 207 (312)
T COG1482 169 FLPAGTPHAY----------LKGLVLEVMQNSDNTYRVYDTDRYDDIGE 207 (312)
T ss_pred EecCCCceee----------ccceEEEEEecCccEEEcccccccccchh
Confidence 5899999776 5666666677887 9999999999995
No 13
>PRK01392 citX 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase; Reviewed
Probab=23.51 E-value=32 Score=30.42 Aligned_cols=31 Identities=42% Similarity=0.702 Sum_probs=17.8
Q ss_pred CccccccccccCCCCCCCCCCCCcccCCCCCCCCCCC
Q 042804 203 DRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRC 239 (251)
Q Consensus 203 DRIYDYdvYNDLG~PD~~~~~~RPvLGG~~~PYPRRc 239 (251)
=|++|.|||+--|. .+..+.|--|| + =||||
T Consensus 112 GRL~DiDV~~~~~~--~~~~iSR~~lg---~-p~R~C 142 (180)
T PRK01392 112 GRLWDLDVLTLEGE--IPHQLSRTDLG---L-PPRRC 142 (180)
T ss_pred hhheeeeeeccCCC--CcCccCHHHcC---C-CCCee
Confidence 39999999952111 01235566666 2 26777
No 14
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=22.76 E-value=76 Score=26.04 Aligned_cols=13 Identities=23% Similarity=0.805 Sum_probs=10.9
Q ss_pred EEeeecccCCCCC
Q 042804 147 ITCNSWLQPKEEN 159 (251)
Q Consensus 147 F~CnSWV~~~~~~ 159 (251)
|+||.|+....+.
T Consensus 89 FpC~rWLa~~~~D 101 (114)
T cd01757 89 FPCGRWLGEGVDD 101 (114)
T ss_pred EecCceecCCCCc
Confidence 9999999987653
No 15
>PF11627 HnRNPA1: Nuclear factor hnRNPA1; InterPro: IPR021662 This family of proteins represents hnRNPA1, a nuclear factor that binds to Pol II transcripts. The family of hnRNP proteins are involved in numerous RNA-related activities [].
Probab=21.83 E-value=63 Score=22.20 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=16.0
Q ss_pred ccccCCCCCCCCCCCCcccCC
Q 042804 210 VYNDLGNPEKDPKLKRPVLGG 230 (251)
Q Consensus 210 vYNDLG~PD~~~~~~RPvLGG 230 (251)
-|||+|+=..-....-|+-||
T Consensus 3 ~YndFGnyn~qsSnfGPmKgg 23 (37)
T PF11627_consen 3 SYNDFGNYNNQSSNFGPMKGG 23 (37)
T ss_pred ccccccccccccCcccccccC
Confidence 389999977666667888766
No 16
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=21.01 E-value=72 Score=25.58 Aligned_cols=10 Identities=20% Similarity=0.866 Sum_probs=8.3
Q ss_pred EEeeecccCC
Q 042804 147 ITCNSWLQPK 156 (251)
Q Consensus 147 F~CnSWV~~~ 156 (251)
|+||.|+...
T Consensus 96 F~c~rWl~~~ 105 (113)
T cd01753 96 FPCYRWIEGY 105 (113)
T ss_pred EEhHHeECCC
Confidence 9999999643
No 17
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=20.24 E-value=1e+02 Score=24.64 Aligned_cols=19 Identities=42% Similarity=0.877 Sum_probs=13.2
Q ss_pred EEeeecccCCCCC-CCCeEE
Q 042804 147 ITCNSWLQPKEEN-TPTRIF 165 (251)
Q Consensus 147 F~CnSWV~~~~~~-~~~RiF 165 (251)
|+||-|+...... .-.|+|
T Consensus 98 F~~~rWl~~~~~d~~~~r~~ 117 (120)
T cd01752 98 FLCNDWLSVEEGDGTVERTF 117 (120)
T ss_pred EEeCcEECCcCCCCEEEEEE
Confidence 9999999987642 334544
Done!