Query 042804
Match_columns 251
No_of_seqs 146 out of 275
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 16:53:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iuk_A SEED lipoxygenase; iron 100.0 7.1E-77 2.4E-81 602.6 12.0 194 55-250 9-253 (864)
2 1f8n_A Lipoxygenase-1; dioxyge 100.0 1.2E-74 4.2E-79 585.5 14.7 187 55-250 6-229 (839)
3 2iuj_A Lipoxygenase L-5; dioxy 100.0 3.3E-70 1.1E-74 553.9 14.8 194 55-250 9-242 (853)
4 1lox_A 15-lipoxygenase, 15LOX; 99.7 3.7E-17 1.3E-21 162.9 6.1 51 147-213 94-146 (662)
5 3fg1_A Allene oxide synthase-l 82.5 0.96 3.3E-05 45.7 4.2 48 147-212 103-152 (696)
6 3dy5_A Allene oxide synthase-l 78.8 1.5 5E-05 46.4 4.2 49 147-213 473-523 (1066)
7 3vf1_A 11R-lipoxygenase; LOX, 74.3 3.1 0.00011 42.0 5.0 39 147-192 121-162 (698)
8 3v98_A Arachidonate 5-lipoxyge 64.1 12 0.00042 37.7 6.7 42 147-192 115-157 (691)
9 1wv8_A TT1413, hypothetical pr 13.6 1.6E+02 0.0053 21.8 3.2 19 133-151 3-21 (73)
10 2bhw_A Chlorophyll A-B binding 10.6 1.3E+02 0.0044 26.3 2.3 19 174-192 52-70 (232)
No 1
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max}
Probab=100.00 E-value=7.1e-77 Score=602.61 Aligned_cols=194 Identities=36% Similarity=0.622 Sum_probs=175.3
Q ss_pred cccceeEEeeeeeEEEEeeEEEEeecC--------------Ccccccccc-cccCCeeEEEEeeccccCCCCCce----e
Q 042804 55 NNIKAIATSKRTLIDNVTAVITVKSNS--------------SLKDEIDES-FLFGKSFSLELVSTKLDHKTGSEK----T 115 (251)
Q Consensus 55 ~~ikg~vv~~~k~~l~~~~~~~v~~~~--------------~~~~~lD~~-dllGk~v~LqLVSa~~d~~tg~gk----a 115 (251)
+++||+|++|++++++++++.++++.. .+.+.+|++ |++|++|+|||||+++||+||+|| +
T Consensus 9 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqlvs~~~~~~~~~~k~~~~~ 88 (864)
T 2iuk_A 9 QKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNISMQLISATQTDGSGNGKVGKEV 88 (864)
T ss_dssp CCEEEEEEEEEGGGSCHHHHTTC-----------------------CCSGGGSCSTTEEEEEEEEEEECSSSCEEEEEEE
T ss_pred CEEEEEEEEEecccccccccccccccccccccccccccccccccchhhhHHHhccCeEEEEEEecccCCCCCCCcCCCcc
Confidence 679999999999999988766222111 224789999 999999999999999999999885 9
Q ss_pred ccCCcccccCCCCCCceEEEEEEEeeCCCCc-------------------------------EEeeecccCCCCCCCCeE
Q 042804 116 TKPSHAIRVGNDKEGNYLYESKFNVPFDFGE-------------------------------ITCNSWLQPKEENTPTRI 164 (251)
Q Consensus 116 ~l~~w~~~~~~~~~~~~~y~~~F~vd~~fG~-------------------------------F~CnSWV~~~~~~~~~Ri 164 (251)
+|++|+.+.....+++++|+|+|+||++||+ |+|||||||+++|+.+||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~fg~pgA~~v~n~~~~e~~l~~~~l~~~~~~~~~~f~cnswv~~~~~~~~~Ri 168 (864)
T 2iuk_A 89 YLEKHLPTLPTLGARQDAFSIFFEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRI 168 (864)
T ss_dssp ECCEEECSCSSCCTTCEEEEEEECCCSTTCCEEEEEEEECSSSCEEEEEEEEECCSSSCCEEEEEEEEECBGGGSSSCEE
T ss_pred cccccccCCCcCCCCcEEEEEEEEeeccCCCcceEEEEeCCCCceEEEEEEEecCCCCCcEEEecCccccCCCCCCCCce
Confidence 9999995544467889999999999999999 999999999999999999
Q ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHhhcCCCccccccCCccccccccccCCCCCCCCCCCCcccCC-CCCCCCCCCCCCC
Q 042804 165 FFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGG-KEYPYPRRCRTGR 243 (251)
Q Consensus 165 FFsNk~YLPs~TP~gL~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYNDLG~PD~~~~~~RPvLGG-~~~PYPRRcRTGR 243 (251)
||+||+|||+|||+||++|||+||++|||||+||||+|||||||||||||||||++++ |||||| ++|||||||||||
T Consensus 169 fF~n~~ylp~~tp~~l~~~R~~el~~lrg~g~g~rk~~driydyd~yndlg~pd~~~~--rpvlggs~~~pyPrR~rtgr 246 (864)
T 2iuk_A 169 FFVNDTYLPSATPAPLLKYRKEEFEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDP--RPILGGCSIYPYPLRVRTGR 246 (864)
T ss_dssp EEBSCCCCTTTSCGGGHHHHHHHHHHHHCCSCSCCCTTCCCCCEECBCCSCBGGGTBC--CCCBSSSSSSCCCCEECCCC
T ss_pred eccCCCcCcccCcHHHHHHHHHHHHHhcCCCCCcccccccchhhhhhhcCCCcccCCC--CcccCCCCCCCCCccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999988 999999 9999999999999
Q ss_pred CCCCCCC
Q 042804 244 PRSELGS 250 (251)
Q Consensus 244 ~pt~tD~ 250 (251)
+||+|||
T Consensus 247 ~~~~~dp 253 (864)
T 2iuk_A 247 ERTRTDP 253 (864)
T ss_dssp CBCSSCT
T ss_pred CCCCCCC
Confidence 9999998
No 2
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ...
Probab=100.00 E-value=1.2e-74 Score=585.54 Aligned_cols=187 Identities=39% Similarity=0.630 Sum_probs=168.8
Q ss_pred cccceeEEeeeeeEEEEeeEEEEeecCCcccccccc-cccCCeeEEEEeeccccCCCCCce----eccCCcccccCCCCC
Q 042804 55 NNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDES-FLFGKSFSLELVSTKLDHKTGSEK----TTKPSHAIRVGNDKE 129 (251)
Q Consensus 55 ~~ikg~vv~~~k~~l~~~~~~~v~~~~~~~~~lD~~-dllGk~v~LqLVSa~~d~~tg~gk----a~l~~w~~~~~~~~~ 129 (251)
+++||+|++|++++++++ +.+ +.+|++ |++|++|+|||||+++||+||+|| ++|++|+.+.....+
T Consensus 6 ~~~~~~v~~~~~~~l~~~-~~~--------~~~d~~~~~~g~~~~l~lvs~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 76 (839)
T 1f8n_A 6 HKIKGTVVLMPKNELEVN-PDG--------SAVDNLNAFLGRSVSLQLISATKADAHGKGKVGKDTFLEGINTSLPTLGA 76 (839)
T ss_dssp CEEEEEEEEEECC---------------------CGGGGTTTTEEEEEEEEEEECTTSSEEECCCEECCEEECCCSCCCT
T ss_pred cEEEEEEEEEeccccccc-ccc--------cchhhhhhhccCeEEEEEEEcccCCCCCCCcCCCcccccccccCCCcCCC
Confidence 679999999999999999 666 889999 999999999999999999999885 999999955444668
Q ss_pred CceEEEEEEEeeCCCCc-------------------------------EEeeecccCCCCCCCCeEEEcCCCCCCCCCcH
Q 042804 130 GNYLYESKFNVPFDFGE-------------------------------ITCNSWLQPKEENTPTRIFFANKSYLPSATPD 178 (251)
Q Consensus 130 ~~~~y~~~F~vd~~fG~-------------------------------F~CnSWV~~~~~~~~~RiFFsNk~YLPs~TP~ 178 (251)
++++|+|+|+||++||+ |+|||||||+++|+.+||||+||+|||++||+
T Consensus 77 ~~~~~~~~f~~~~~fg~pga~~v~n~~~~e~~l~~~~l~~~~~~~~~~f~cnswv~~~~~~~~~riff~n~~ylp~~tp~ 156 (839)
T 1f8n_A 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPA 156 (839)
T ss_dssp TCEEEEEEEECCGGGCCEEEEEEEECSSSCEEEEEEEECC----CCEEEEEEEEECBGGGCSSCEEEECSCCCCGGGSCG
T ss_pred CceEEEEEEEeccccCCceeEEEEeCCCCceEEEEEEEecCCCCCcEEEecccccCCCCCCCCCcEeccCccccCCCCch
Confidence 89999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCccccccCCccccccccccCCCCCCCCCCCCcccCC-CCCCCCCCCCCCCCCCCCCC
Q 042804 179 GLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGG-KEYPYPRRCRTGRPRSELGS 250 (251)
Q Consensus 179 gL~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYNDLG~PD~~~~~~RPvLGG-~~~PYPRRcRTGR~pt~tD~ 250 (251)
||++|||+||++|||||+||||+|||||||||||||||||++++++|||||| ++|||||||||||+|++|||
T Consensus 157 ~l~~~r~~el~~lrG~g~G~rk~~driYdyd~ynDlg~pd~~~~~~rpvlggs~~~Pyprr~rtgr~~~~~d~ 229 (839)
T 1f8n_A 157 PLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDP 229 (839)
T ss_dssp GGHHHHHHHHHHHHCCSCSCCCTTCCCCCEECBCSSCCTTTCGGGCCCCBSSSSSSCCCCEECCCCCBCSSCT
T ss_pred HHHhhhHHHHHHhhcCCccccccccceeehhhhccccCCCcCccccccccCCCCCCCCCCccccCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999 89999999999999999998
No 3
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max}
Probab=100.00 E-value=3.3e-70 Score=553.90 Aligned_cols=194 Identities=38% Similarity=0.662 Sum_probs=174.7
Q ss_pred cccceeEEeeeeeEEEEeeEEEEeecC-----CcccccccccccCCeeEEEEeeccccCCCCCce----eccCCcccccC
Q 042804 55 NNIKAIATSKRTLIDNVTAVITVKSNS-----SLKDEIDESFLFGKSFSLELVSTKLDHKTGSEK----TTKPSHAIRVG 125 (251)
Q Consensus 55 ~~ikg~vv~~~k~~l~~~~~~~v~~~~-----~~~~~lD~~dllGk~v~LqLVSa~~d~~tg~gk----a~l~~w~~~~~ 125 (251)
+++||+|++|++++++++++.+|+-.+ ...+++|++.++|++|+|||||++++ +||+|| ++|++|++ ..
T Consensus 9 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~v~lqlvs~~~~-~~~~~~~~~~~~~~~~~~-~~ 86 (853)
T 2iuj_A 9 QKIKGTMVVMQKNVLDINSITSVDGIVGTGLDFLGSALDTVTFLASSISIQLISATKA-DGGKGKVGKATNLRGKIT-LP 86 (853)
T ss_dssp CEEEEEEEEEEGGGSSSSCCCCC--------------CCCCCCCSSSEEEEEEEEEEE-SSSSEEEEEEEECCCCCC-CS
T ss_pred cEEEEEEEEEeccccccccccccccccccccccccccccceeecCCeEEEEEEEeeeC-CCCCcccCCccccccccC-CC
Confidence 679999999999999999843321111 12277888899999999999999999 999885 99999995 33
Q ss_pred CCCCCceEEEEEEEeeCCCCc-------------------------------EEeeecccCCCCCCCCeEEEcCCCCCCC
Q 042804 126 NDKEGNYLYESKFNVPFDFGE-------------------------------ITCNSWLQPKEENTPTRIFFANKSYLPS 174 (251)
Q Consensus 126 ~~~~~~~~y~~~F~vd~~fG~-------------------------------F~CnSWV~~~~~~~~~RiFFsNk~YLPs 174 (251)
...+++++|+|+|+||++||+ |+||||||++++|+.+||||+|++|||+
T Consensus 87 ~~~~~~~~~~v~f~~~~~~G~~gav~v~n~~~~e~fl~~i~l~~~p~~g~~~F~c~sWv~~~~~~~~~riff~n~~ylp~ 166 (853)
T 2iuj_A 87 TIGAKEEAYDAQFDWDSDFGIPGAFYIKNYMQNEFYLKSLILEDIPNHGTIHFICNSWVYNSKHYKTDRIFFANNTYLPS 166 (853)
T ss_dssp SCCTTEEEEEEEEECCSSSCCEEEEEEEECSSSCEEEEEEEECCCTTSCCEEEEEEEEECBTTSCSSCEEEECSCCCCGG
T ss_pred CCCCCceEEEEEeeccccCCCceEEEEEecCCccceEeEEEEeecCCCCcEEEEecccccCCCCCCCCeEEEeCCccCcc
Confidence 456889999999999999999 9999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhhcCCCccccccCCccccccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 042804 175 ATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSELGS 250 (251)
Q Consensus 175 ~TP~gL~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYNDLG~PD~~~~~~RPvLGG~~~PYPRRcRTGR~pt~tD~ 250 (251)
|||++|++|||+||++|||||+||||+|||||||||||||||||++++++||||||.+|||||||||||+||++||
T Consensus 167 ~tp~~l~~~R~~EL~~lrg~g~g~rk~~driYdy~~yndlg~pd~~~~~~rpvlgGs~~Pyprr~rtgr~~~~~d~ 242 (853)
T 2iuj_A 167 ETPAPLVKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLGDPDKGEKYARPVLGGSALPYPRRGRTGRGKTRKDP 242 (853)
T ss_dssp GSCTTTHHHHHHHHHHHHCCSCSCCCTTCCCCCEECBCCSCCGGGCTTSCCCCBSSSSSCCCCEECCCCCBCSSCT
T ss_pred cCCHHHHHHHHHHHHHhcCCCCccccccceeeeccccccCCCCccCccccCcccCCCCCCCCccccCCCCCccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 4
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A*
Probab=99.66 E-value=3.7e-17 Score=162.91 Aligned_cols=51 Identities=14% Similarity=0.344 Sum_probs=49.6
Q ss_pred EEeeecccCCCCCCCCeEEEcC-CCCCCCC-CcHHHHHHHHHHHHhhcCCCccccccCCcccccccccc
Q 042804 147 ITCNSWLQPKEENTPTRIFFAN-KSYLPSA-TPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYND 213 (251)
Q Consensus 147 F~CnSWV~~~~~~~~~RiFFsN-k~YLPs~-TP~gL~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYND 213 (251)
|+|||||++ .+||||+| ++|||++ ||++|+++||+||+++ |||||||+|||
T Consensus 94 F~Cn~WL~~-----~~rvff~~G~~~Lp~~D~~~~l~~~R~~eL~~~-----------~~~Y~~~~y~d 146 (662)
T 1lox_A 94 FPCYRWVVG-----DGVQSLPVGTGCTTVGDPQGLFQKHREQELEER-----------RKLYQWGSWKE 146 (662)
T ss_dssp EEEEEEECS-----SCCEEEECTTCCCSTTCTTCTTHHHHHHHHHHH-----------HHHSCEECSST
T ss_pred EEeceEecC-----CCEEEEecCceeeecccCChhhhhhhHHHHHhh-----------hcEEeecCcCC
Confidence 999999997 68999999 9999999 9999999999999999 89999999999
No 5
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A
Probab=82.55 E-value=0.96 Score=45.69 Aligned_cols=48 Identities=19% Similarity=0.405 Sum_probs=38.1
Q ss_pred EEeeecccCCCCCCCCeEEEc-CCCCCCCCCcH-HHHHHHHHHHHhhcCCCccccccCCccccccccc
Q 042804 147 ITCNSWLQPKEENTPTRIFFA-NKSYLPSATPD-GLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYN 212 (251)
Q Consensus 147 F~CnSWV~~~~~~~~~RiFFs-Nk~YLPs~TP~-gL~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYN 212 (251)
|+||.|+.-. +.+. -++.||.+-+. -|++.|++||++-| ..|.++.|.
T Consensus 103 Fpc~rWL~~d-------l~lreG~a~l~~~d~~~~~~~~R~~el~~r~-----------~~y~w~~~~ 152 (696)
T 3fg1_A 103 FPCFRWVIKD-------MVLFPGEATLPFNEVPAIVSEQRQKELEQRK-----------LTYQWDYVS 152 (696)
T ss_dssp EEEEEEESSE-------EEECCSSCCCTTSCCCHHHHHHHHHHHHHHH-----------HHSCEECSS
T ss_pred eEhhhhccCC-------eEecCcceecccccccHHHHHHHHHHHHHhh-----------heecCCCCC
Confidence 9999999842 5554 67899987664 47999999999887 567787775
No 6
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla}
Probab=78.77 E-value=1.5 Score=46.38 Aligned_cols=49 Identities=20% Similarity=0.462 Sum_probs=38.9
Q ss_pred EEeeecccCCCCCCCCeEEEc-CCCCCCCCCcHH-HHHHHHHHHHhhcCCCccccccCCcccccccccc
Q 042804 147 ITCNSWLQPKEENTPTRIFFA-NKSYLPSATPDG-LKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYND 213 (251)
Q Consensus 147 F~CnSWV~~~~~~~~~RiFFs-Nk~YLPs~TP~g-L~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYND 213 (251)
|+||.|+... +.+. -++.||.+-+.+ |++.|++||+.-| ..|.++.|..
T Consensus 473 Fpc~rWL~~d-------~~lr~G~a~l~~~d~~p~~~~~R~~EL~~rr-----------~~Y~w~~~~~ 523 (1066)
T 3dy5_A 473 FPCFRWVIKD-------MVLFPGEATLPFNEVPAIVSEQRQKELEQRK-----------LTYQWDYVSD 523 (1066)
T ss_dssp EEEEEEESSE-------EEECCSSCCCSCSCCCHHHHHHHHHHHHHHH-----------HHSCEECSST
T ss_pred EehhhhccCC-------eEeccCceeecccCCChHHHHHHHHHHHHHH-----------hheecCcCCC
Confidence 9999999843 5554 678899877554 7899999999988 4688888763
No 7
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa}
Probab=74.25 E-value=3.1 Score=42.02 Aligned_cols=39 Identities=18% Similarity=0.467 Sum_probs=32.0
Q ss_pred EEeeecccCCCCCCCCeEEEc-CCCCCCCCCc--HHHHHHHHHHHHhhc
Q 042804 147 ITCNSWLQPKEENTPTRIFFA-NKSYLPSATP--DGLKRLRRQELRHLQ 192 (251)
Q Consensus 147 F~CnSWV~~~~~~~~~RiFFs-Nk~YLPs~TP--~gL~~lRe~EL~~LR 192 (251)
|+||.|+.-. +.+. -++.||.+-+ +-|++.|++||++-|
T Consensus 121 Fpc~rWL~~d-------~~l~~G~a~l~~~d~~~~~~~~~R~~El~~r~ 162 (698)
T 3vf1_A 121 FPCYRWVIKQ-------LVVYEGKAILPNSKDNVKTIAEQRTKEVSENK 162 (698)
T ss_dssp EEEEEECSSE-------EEEECSSCCCTTSSSCCHHHHHHHHHHHHHHH
T ss_pred EEhhhcccCC-------cEecCCceecccccccchHHHHHHHHHHHHHH
Confidence 9999999842 5554 6889998876 567999999999887
No 8
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B
Probab=64.08 E-value=12 Score=37.73 Aligned_cols=42 Identities=24% Similarity=0.414 Sum_probs=32.1
Q ss_pred EEeeecccCCCCCCCCeEEEcCCCCCCCCCc-HHHHHHHHHHHHhhc
Q 042804 147 ITCNSWLQPKEENTPTRIFFANKSYLPSATP-DGLKRLRRQELRHLQ 192 (251)
Q Consensus 147 F~CnSWV~~~~~~~~~RiFFsNk~YLPs~TP-~gL~~lRe~EL~~LR 192 (251)
|+||.|+.-.. .-++-.-++.||.+-. +-|++.|++||+.-|
T Consensus 115 Fpc~rWL~~d~----~l~l~~g~a~~~~~d~~~~~~~~R~~El~~r~ 157 (691)
T 3v98_A 115 FPCYRWITGDV----EVVLRDGRAKLARDDQIHILKQHRRKELETRQ 157 (691)
T ss_dssp EEEEEEECSSS----CEEEECSSCCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred EehHHhcCCCC----EEEEcCCceeecccCCCHHHHHHHHHHHHHHH
Confidence 99999998532 2344447788997665 557899999999887
No 9
>1wv8_A TT1413, hypothetical protein TTHA1013; structural genomics, unknown function, novel F riken structural genomics/proteomics initiative, RSGI; 2.20A {Thermus thermophilus} SCOP: d.304.1.1
Probab=13.59 E-value=1.6e+02 Score=21.75 Aligned_cols=19 Identities=11% Similarity=-0.111 Sum_probs=15.1
Q ss_pred EEEEEEEeeCCCCcEEeee
Q 042804 133 LYESKFNVPFDFGEITCNS 151 (251)
Q Consensus 133 ~y~~~F~vd~~fG~F~CnS 151 (251)
.|.|...||++-|.|++-|
T Consensus 3 ~f~V~~~~Deeagv~vA~s 21 (73)
T 1wv8_A 3 TLKVQALWDGEAGVWVAES 21 (73)
T ss_dssp EEEEEEEEETTTTEEEEEC
T ss_pred eEEEEEEEeCCCCEEEEEC
Confidence 6999999999888665544
No 10
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=10.62 E-value=1.3e+02 Score=26.26 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.0
Q ss_pred CCCcHHHHHHHHHHHHhhc
Q 042804 174 SATPDGLKRLRRQELRHLQ 192 (251)
Q Consensus 174 s~TP~gL~~lRe~EL~~LR 192 (251)
++.|+.++.|||-||++=|
T Consensus 52 s~d~e~~~r~ReaELkHGR 70 (232)
T 2bhw_A 52 SADPETFSKNRELEVIHSR 70 (232)
T ss_dssp TCSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccc
Confidence 4578999999999998755
Done!