Query 042806
Match_columns 390
No_of_seqs 213 out of 2352
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 09:40:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.3E-45 4.9E-50 377.9 27.6 336 38-379 25-385 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 2.3E-35 5E-40 273.4 16.7 218 159-380 1-226 (287)
3 PLN03210 Resistant to P. syrin 100.0 4.3E-28 9.2E-33 261.7 26.7 218 153-380 183-418 (1153)
4 TIGR03015 pepcterm_ATPase puta 99.5 2.4E-12 5.2E-17 118.1 21.5 182 173-357 41-242 (269)
5 PF01637 Arch_ATPase: Archaeal 99.5 2.6E-13 5.7E-18 121.4 11.5 194 156-353 1-234 (234)
6 PRK00411 cdc6 cell division co 99.4 3.6E-11 7.8E-16 116.5 20.8 202 153-355 29-257 (394)
7 PF05729 NACHT: NACHT domain 99.4 4E-12 8.6E-17 107.5 12.1 143 176-323 1-163 (166)
8 PRK04841 transcriptional regul 99.4 1.2E-11 2.6E-16 132.4 17.2 195 153-360 13-232 (903)
9 TIGR02928 orc1/cdc6 family rep 99.3 2.7E-10 5.8E-15 109.3 21.1 198 154-351 15-244 (365)
10 TIGR00635 ruvB Holliday juncti 99.1 2E-09 4.3E-14 100.6 17.0 188 154-356 4-204 (305)
11 PRK06893 DNA replication initi 99.1 1.8E-09 3.9E-14 96.4 13.5 155 174-357 38-207 (229)
12 PRK00080 ruvB Holliday junctio 99.1 7.2E-09 1.6E-13 97.8 17.4 191 152-356 23-225 (328)
13 PRK13342 recombination factor 99.1 2.9E-09 6.3E-14 103.5 14.3 180 152-357 10-200 (413)
14 PF13173 AAA_14: AAA domain 99.0 8E-10 1.7E-14 89.4 7.7 121 175-315 2-127 (128)
15 COG2909 MalT ATP-dependent tra 99.0 1.3E-08 2.8E-13 102.3 16.6 204 147-360 12-240 (894)
16 PRK12402 replication factor C 99.0 1.2E-08 2.6E-13 96.7 15.9 201 153-355 14-228 (337)
17 TIGR03420 DnaA_homol_Hda DnaA 99.0 9E-09 1.9E-13 91.8 13.1 170 159-356 22-204 (226)
18 PRK14961 DNA polymerase III su 99.0 4.3E-08 9.3E-13 93.6 17.7 179 153-353 15-220 (363)
19 COG2256 MGS1 ATPase related to 98.9 1E-08 2.2E-13 95.0 12.1 176 152-353 22-212 (436)
20 PF13401 AAA_22: AAA domain; P 98.9 3.3E-09 7.3E-14 86.0 7.9 116 174-291 3-125 (131)
21 PRK07003 DNA polymerase III su 98.9 3.5E-08 7.6E-13 99.4 16.3 183 151-355 13-223 (830)
22 TIGR02903 spore_lon_C ATP-depe 98.9 4.1E-07 8.8E-12 92.4 23.3 202 153-356 153-398 (615)
23 PRK00440 rfc replication facto 98.9 8.5E-08 1.8E-12 90.1 17.1 186 152-355 15-205 (319)
24 PRK05564 DNA polymerase III su 98.9 7.5E-08 1.6E-12 90.2 16.5 177 154-352 4-189 (313)
25 PRK14949 DNA polymerase III su 98.9 4.3E-08 9.3E-13 100.5 15.3 184 152-353 14-220 (944)
26 PTZ00112 origin recognition co 98.9 9.8E-08 2.1E-12 96.9 17.0 207 153-359 754-988 (1164)
27 PRK12323 DNA polymerase III su 98.9 5.6E-08 1.2E-12 96.6 14.8 181 151-353 13-225 (700)
28 PLN03025 replication factor C 98.8 8.4E-08 1.8E-12 90.1 15.3 186 152-353 11-200 (319)
29 PTZ00202 tuzin; Provisional 98.8 4.5E-07 9.7E-12 85.9 19.6 165 149-323 257-434 (550)
30 PRK14960 DNA polymerase III su 98.8 7.4E-08 1.6E-12 96.0 15.2 181 151-353 12-219 (702)
31 COG1474 CDC6 Cdc6-related prot 98.8 6.1E-07 1.3E-11 85.1 20.2 202 155-356 18-241 (366)
32 PRK14963 DNA polymerase III su 98.8 2E-07 4.3E-12 92.2 17.1 203 152-358 12-223 (504)
33 PRK04195 replication factor C 98.8 1.2E-07 2.7E-12 93.9 15.7 184 151-357 11-206 (482)
34 PRK06645 DNA polymerase III su 98.8 2.7E-07 5.8E-12 91.0 17.3 197 152-353 19-229 (507)
35 PRK14962 DNA polymerase III su 98.8 2.1E-07 4.5E-12 91.3 16.5 188 153-358 13-224 (472)
36 cd00009 AAA The AAA+ (ATPases 98.8 5.2E-08 1.1E-12 80.0 10.7 123 157-293 1-131 (151)
37 PRK14956 DNA polymerase III su 98.8 1.3E-07 2.8E-12 91.6 13.7 199 151-353 15-222 (484)
38 PRK08084 DNA replication initi 98.8 4.1E-07 8.8E-12 81.5 15.7 167 163-357 33-213 (235)
39 PRK07994 DNA polymerase III su 98.7 1.7E-07 3.6E-12 94.5 14.4 196 151-354 13-221 (647)
40 PRK14951 DNA polymerase III su 98.7 3.4E-07 7.4E-12 92.1 16.3 197 152-353 14-225 (618)
41 PRK09087 hypothetical protein; 98.7 2.3E-07 5.1E-12 82.4 13.5 143 174-354 43-196 (226)
42 PRK14958 DNA polymerase III su 98.7 2.8E-07 6.1E-12 91.3 15.0 186 151-354 13-221 (509)
43 TIGR02397 dnaX_nterm DNA polym 98.7 8.8E-07 1.9E-11 84.6 17.7 184 153-355 13-220 (355)
44 PRK14957 DNA polymerase III su 98.7 6.4E-07 1.4E-11 88.9 17.0 187 152-356 14-224 (546)
45 PRK14964 DNA polymerase III su 98.7 6E-07 1.3E-11 87.9 16.4 184 152-353 11-217 (491)
46 PF00308 Bac_DnaA: Bacterial d 98.7 2E-07 4.4E-12 82.4 11.9 164 175-355 34-210 (219)
47 PRK08727 hypothetical protein; 98.7 3.8E-07 8.1E-12 81.7 13.7 152 172-351 38-202 (233)
48 PRK09112 DNA polymerase III su 98.7 8.8E-07 1.9E-11 83.8 16.8 199 150-354 19-241 (351)
49 TIGR00678 holB DNA polymerase 98.7 8.1E-07 1.7E-11 76.8 15.2 160 165-349 3-187 (188)
50 PRK07940 DNA polymerase III su 98.7 7.3E-07 1.6E-11 85.5 16.3 172 154-353 5-213 (394)
51 PRK07471 DNA polymerase III su 98.7 1.2E-06 2.7E-11 83.2 17.6 196 151-354 16-239 (365)
52 PF13191 AAA_16: AAA ATPase do 98.7 9.2E-08 2E-12 82.3 9.1 48 155-202 1-51 (185)
53 PRK05896 DNA polymerase III su 98.7 5.3E-07 1.2E-11 89.7 15.2 195 152-355 14-223 (605)
54 COG3899 Predicted ATPase [Gene 98.7 2.8E-07 6.1E-12 96.7 13.5 204 155-360 1-267 (849)
55 PRK08691 DNA polymerase III su 98.7 5.3E-07 1.2E-11 90.7 14.8 182 151-354 13-221 (709)
56 cd01128 rho_factor Transcripti 98.6 7.2E-08 1.6E-12 86.6 7.5 91 174-265 15-114 (249)
57 PRK13341 recombination factor 98.6 5.2E-07 1.1E-11 92.7 14.7 177 151-353 25-217 (725)
58 PF05496 RuvB_N: Holliday junc 98.6 3.7E-06 8.1E-11 73.1 17.3 180 150-358 20-226 (233)
59 PRK14970 DNA polymerase III su 98.6 1.9E-06 4.1E-11 82.7 16.7 182 153-352 16-208 (367)
60 PRK08903 DnaA regulatory inact 98.6 8.5E-07 1.8E-11 79.2 13.2 153 174-358 41-204 (227)
61 PRK14955 DNA polymerase III su 98.6 8.9E-07 1.9E-11 85.6 14.3 200 153-353 15-228 (397)
62 PRK14969 DNA polymerase III su 98.6 1E-06 2.3E-11 87.8 15.1 184 152-353 14-221 (527)
63 PRK07764 DNA polymerase III su 98.6 1.4E-06 3E-11 90.8 16.3 177 153-351 14-219 (824)
64 PRK14087 dnaA chromosomal repl 98.6 1.1E-06 2.3E-11 86.1 14.6 168 176-357 142-323 (450)
65 PRK05642 DNA replication initi 98.6 1.3E-06 2.8E-11 78.2 13.9 155 175-357 45-212 (234)
66 PF14516 AAA_35: AAA-like doma 98.6 5.7E-06 1.2E-10 78.0 18.7 200 153-360 10-246 (331)
67 TIGR01242 26Sp45 26S proteasom 98.6 8.3E-07 1.8E-11 85.0 13.1 173 153-347 121-328 (364)
68 PRK14959 DNA polymerase III su 98.6 1.6E-06 3.4E-11 86.9 15.3 198 153-358 15-226 (624)
69 KOG2028 ATPase related to the 98.6 9.2E-07 2E-11 81.0 12.1 173 155-348 139-331 (554)
70 PRK14950 DNA polymerase III su 98.5 3.6E-06 7.8E-11 85.4 17.6 197 153-356 15-224 (585)
71 PRK09111 DNA polymerase III su 98.5 2.5E-06 5.4E-11 86.0 16.2 198 152-354 22-234 (598)
72 PRK09376 rho transcription ter 98.5 3.4E-07 7.4E-12 86.0 8.5 90 174-264 168-266 (416)
73 PRK14952 DNA polymerase III su 98.5 4.7E-06 1E-10 83.6 17.0 199 152-358 11-225 (584)
74 PRK14953 DNA polymerase III su 98.5 7.1E-06 1.5E-10 81.0 17.8 180 153-354 15-221 (486)
75 PRK03992 proteasome-activating 98.5 1.8E-06 3.9E-11 83.2 13.2 173 153-347 130-337 (389)
76 PHA02544 44 clamp loader, smal 98.5 2E-06 4.4E-11 80.8 12.8 176 150-348 17-204 (316)
77 PRK08451 DNA polymerase III su 98.5 7.2E-06 1.6E-10 81.2 16.9 185 152-354 12-219 (535)
78 TIGR03345 VI_ClpV1 type VI sec 98.5 2.1E-06 4.5E-11 90.4 13.9 179 153-345 186-388 (852)
79 TIGR02639 ClpA ATP-dependent C 98.5 1.8E-06 3.9E-11 89.9 12.9 157 153-323 181-358 (731)
80 PRK14954 DNA polymerase III su 98.4 7.5E-06 1.6E-10 82.7 16.4 197 153-354 15-230 (620)
81 PRK07133 DNA polymerase III su 98.4 8.3E-06 1.8E-10 83.0 16.6 187 153-352 17-218 (725)
82 TIGR02881 spore_V_K stage V sp 98.4 1.7E-06 3.6E-11 78.9 10.4 135 174-324 41-192 (261)
83 PRK14971 DNA polymerase III su 98.4 1.2E-05 2.7E-10 81.5 17.5 182 153-353 16-222 (614)
84 KOG2227 Pre-initiation complex 98.4 3E-05 6.4E-10 73.7 18.4 204 151-354 147-373 (529)
85 COG1373 Predicted ATPase (AAA+ 98.4 4.5E-06 9.8E-11 80.5 13.6 194 157-377 20-247 (398)
86 PF05621 TniB: Bacterial TniB 98.4 1.1E-05 2.4E-10 73.3 15.0 192 161-353 44-261 (302)
87 TIGR00362 DnaA chromosomal rep 98.4 7.1E-06 1.5E-10 79.8 14.5 160 175-351 136-308 (405)
88 COG3903 Predicted ATPase [Gene 98.4 3.7E-07 8E-12 85.3 5.1 179 174-362 13-198 (414)
89 CHL00095 clpC Clp protease ATP 98.4 4.9E-06 1.1E-10 87.8 14.2 180 153-345 178-379 (821)
90 PRK06305 DNA polymerase III su 98.4 1.3E-05 2.9E-10 78.5 16.2 178 153-353 16-223 (451)
91 TIGR02880 cbbX_cfxQ probable R 98.4 3.6E-06 7.9E-11 77.5 11.6 132 177-324 60-209 (284)
92 PRK14086 dnaA chromosomal repl 98.4 1E-05 2.2E-10 80.8 15.4 159 176-351 315-486 (617)
93 PRK14948 DNA polymerase III su 98.4 1.9E-05 4.2E-10 80.1 17.5 197 153-355 15-224 (620)
94 PRK14965 DNA polymerase III su 98.4 9.8E-06 2.1E-10 81.9 15.1 197 152-356 14-224 (576)
95 TIGR00767 rho transcription te 98.4 2.4E-06 5.2E-11 80.7 10.0 90 174-264 167-265 (415)
96 KOG0989 Replication factor C, 98.3 4.5E-06 9.8E-11 75.0 10.5 183 149-346 31-223 (346)
97 PRK05563 DNA polymerase III su 98.3 2.9E-05 6.2E-10 78.2 17.5 194 152-353 14-220 (559)
98 PRK00149 dnaA chromosomal repl 98.3 1E-05 2.2E-10 79.8 13.9 159 175-350 148-319 (450)
99 KOG2543 Origin recognition com 98.3 1.1E-05 2.3E-10 74.7 12.5 196 154-355 6-228 (438)
100 PRK06647 DNA polymerase III su 98.3 3.5E-05 7.6E-10 77.4 17.4 194 152-353 14-220 (563)
101 PRK06620 hypothetical protein; 98.3 5.5E-06 1.2E-10 73.0 9.9 141 176-357 45-193 (214)
102 TIGR03689 pup_AAA proteasome A 98.3 1.9E-05 4.1E-10 77.8 14.1 160 153-325 181-380 (512)
103 PRK14088 dnaA chromosomal repl 98.3 1.8E-05 3.9E-10 77.5 13.8 157 175-348 130-300 (440)
104 CHL00181 cbbX CbbX; Provisiona 98.2 1.3E-05 2.9E-10 73.8 12.1 132 177-324 61-210 (287)
105 COG3267 ExeA Type II secretory 98.2 0.00014 3.1E-09 64.0 17.5 178 173-355 49-247 (269)
106 TIGR03346 chaperone_ClpB ATP-d 98.2 2.1E-05 4.5E-10 83.3 14.3 158 153-323 172-349 (852)
107 PRK12422 chromosomal replicati 98.2 4E-05 8.7E-10 74.9 15.0 153 176-347 142-307 (445)
108 PRK10865 protein disaggregatio 98.2 3E-05 6.5E-10 82.0 14.9 157 153-323 177-354 (857)
109 PF00004 AAA: ATPase family as 98.2 4E-06 8.7E-11 67.7 6.7 23 178-200 1-23 (132)
110 PRK07399 DNA polymerase III su 98.2 7.9E-05 1.7E-09 69.6 16.1 195 154-354 4-222 (314)
111 PTZ00454 26S protease regulato 98.2 2E-05 4.2E-10 75.9 12.3 175 153-349 144-353 (398)
112 smart00382 AAA ATPases associa 98.2 9.1E-06 2E-10 65.8 8.4 90 176-268 3-92 (148)
113 PRK11331 5-methylcytosine-spec 98.1 1.9E-05 4E-10 76.0 10.9 69 154-224 175-243 (459)
114 TIGR01241 FtsH_fam ATP-depende 98.1 0.0001 2.2E-09 73.6 16.7 179 153-353 54-267 (495)
115 COG2255 RuvB Holliday junction 98.1 7.9E-05 1.7E-09 66.5 13.0 178 151-357 23-227 (332)
116 PRK11034 clpA ATP-dependent Cl 98.1 1.1E-05 2.3E-10 83.6 8.8 158 153-323 185-362 (758)
117 PRK05707 DNA polymerase III su 98.1 9.9E-05 2.1E-09 69.3 14.5 151 175-353 22-203 (328)
118 COG0593 DnaA ATPase involved i 98.1 2.1E-05 4.6E-10 74.8 10.0 132 175-324 113-258 (408)
119 CHL00176 ftsH cell division pr 98.1 6.2E-05 1.3E-09 76.6 13.6 169 155-345 184-386 (638)
120 PF05673 DUF815: Protein of un 98.1 0.00027 5.8E-09 62.5 15.5 53 150-202 23-79 (249)
121 COG1222 RPT1 ATP-dependent 26S 98.0 0.00024 5.1E-09 65.5 15.5 184 152-359 149-373 (406)
122 TIGR00602 rad24 checkpoint pro 98.0 2.7E-05 5.9E-10 78.7 10.0 51 150-200 80-135 (637)
123 PTZ00361 26 proteosome regulat 98.0 4E-05 8.8E-10 74.4 10.6 172 153-348 182-390 (438)
124 PF10443 RNA12: RNA12 protein; 98.0 0.00044 9.5E-09 65.8 16.6 197 159-362 1-287 (431)
125 TIGR02640 gas_vesic_GvpN gas v 98.0 0.00023 4.9E-09 64.9 14.3 56 161-223 9-64 (262)
126 TIGR00763 lon ATP-dependent pr 98.0 0.00043 9.4E-09 72.8 18.0 157 155-323 321-505 (775)
127 PRK08116 hypothetical protein; 98.0 3.4E-05 7.4E-10 70.4 8.5 101 176-291 115-220 (268)
128 PRK08058 DNA polymerase III su 98.0 0.00034 7.3E-09 66.0 15.5 145 156-322 7-181 (329)
129 COG2812 DnaX DNA polymerase II 97.9 4.2E-05 9E-10 75.0 9.4 188 152-347 14-214 (515)
130 PRK06871 DNA polymerase III su 97.9 0.00064 1.4E-08 63.5 16.8 177 163-352 11-202 (325)
131 COG0466 Lon ATP-dependent Lon 97.9 0.0014 3E-08 65.8 19.6 156 156-323 325-508 (782)
132 PRK08769 DNA polymerase III su 97.9 0.00087 1.9E-08 62.5 17.4 174 161-354 11-209 (319)
133 PRK08181 transposase; Validate 97.9 0.00019 4.1E-09 65.3 12.6 104 168-291 101-208 (269)
134 PRK10787 DNA-binding ATP-depen 97.9 0.0006 1.3E-08 71.3 17.9 158 154-323 322-506 (784)
135 PHA00729 NTP-binding motif con 97.9 0.00014 3E-09 63.9 10.9 36 165-200 7-42 (226)
136 CHL00195 ycf46 Ycf46; Provisio 97.9 0.0001 2.2E-09 72.7 10.9 154 174-347 258-429 (489)
137 TIGR02902 spore_lonB ATP-depen 97.8 0.00012 2.7E-09 73.4 10.7 47 153-199 64-110 (531)
138 COG1484 DnaC DNA replication p 97.8 0.00017 3.7E-09 65.2 10.4 82 165-265 97-178 (254)
139 PRK10536 hypothetical protein; 97.8 0.00038 8.2E-09 62.2 11.8 55 153-209 54-108 (262)
140 KOG2035 Replication factor C, 97.8 0.0013 2.7E-08 58.8 14.8 208 155-376 14-258 (351)
141 PRK06090 DNA polymerase III su 97.8 0.0016 3.5E-08 60.7 16.5 160 163-353 12-201 (319)
142 PRK12608 transcription termina 97.8 0.00035 7.5E-09 65.9 11.7 99 165-264 122-230 (380)
143 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00033 7.2E-09 74.0 12.9 106 154-266 566-680 (852)
144 TIGR02639 ClpA ATP-dependent C 97.7 0.00035 7.5E-09 73.1 12.7 102 155-266 455-565 (731)
145 KOG0733 Nuclear AAA ATPase (VC 97.7 0.00071 1.5E-08 66.5 13.6 93 153-265 189-293 (802)
146 PF13177 DNA_pol3_delta2: DNA 97.7 0.0004 8.7E-09 58.4 10.2 137 158-311 1-162 (162)
147 PF01695 IstB_IS21: IstB-like 97.7 7.4E-05 1.6E-09 63.8 5.8 75 174-266 46-120 (178)
148 PRK07993 DNA polymerase III su 97.7 0.0022 4.7E-08 60.5 15.8 165 162-351 10-202 (334)
149 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00072 1.6E-08 71.9 13.7 106 154-266 565-679 (852)
150 TIGR01243 CDC48 AAA family ATP 97.7 0.00063 1.4E-08 71.3 13.2 172 154-347 453-657 (733)
151 TIGR02237 recomb_radB DNA repa 97.6 0.00028 6E-09 62.0 8.9 87 174-264 11-107 (209)
152 PRK08939 primosomal protein Dn 97.6 0.00033 7.1E-09 65.1 9.7 115 158-290 135-259 (306)
153 PRK08118 topology modulation p 97.6 3.2E-05 7E-10 65.4 2.7 34 177-210 3-37 (167)
154 PRK07261 topology modulation p 97.6 0.00027 5.9E-09 60.0 8.3 34 177-210 2-36 (171)
155 PRK04132 replication factor C 97.6 0.0019 4E-08 67.5 15.6 158 182-355 571-733 (846)
156 TIGR01243 CDC48 AAA family ATP 97.6 0.00074 1.6E-08 70.8 12.9 174 153-348 177-382 (733)
157 KOG0735 AAA+-type ATPase [Post 97.6 0.00067 1.4E-08 67.8 11.6 153 175-346 431-608 (952)
158 KOG2004 Mitochondrial ATP-depe 97.6 0.0074 1.6E-07 60.7 18.6 156 154-323 411-596 (906)
159 PRK10865 protein disaggregatio 97.6 0.00076 1.6E-08 71.5 12.2 106 154-266 568-682 (857)
160 PRK11034 clpA ATP-dependent Cl 97.6 0.00061 1.3E-08 70.8 11.2 102 155-266 459-569 (758)
161 PRK06526 transposase; Provisio 97.6 0.00011 2.5E-09 66.3 5.2 74 175-266 98-171 (254)
162 PRK06964 DNA polymerase III su 97.5 0.0058 1.3E-07 57.6 16.8 89 256-353 134-225 (342)
163 TIGR03499 FlhF flagellar biosy 97.5 0.00071 1.5E-08 62.3 10.4 87 174-263 193-281 (282)
164 KOG2228 Origin recognition com 97.5 0.001 2.2E-08 60.9 11.0 168 154-324 24-220 (408)
165 PLN00020 ribulose bisphosphate 97.5 0.004 8.7E-08 58.4 15.2 29 173-201 146-174 (413)
166 PRK12377 putative replication 97.5 0.00046 1E-08 62.0 8.7 73 175-264 101-173 (248)
167 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00062 1.3E-08 61.0 9.6 90 174-264 18-125 (235)
168 PF04665 Pox_A32: Poxvirus A32 97.5 0.00014 2.9E-09 64.6 5.2 36 176-213 14-49 (241)
169 KOG1969 DNA replication checkp 97.5 0.00035 7.5E-09 69.9 8.1 75 174-266 325-399 (877)
170 COG0542 clpA ATP-binding subun 97.5 0.01 2.2E-07 61.1 18.4 103 155-266 492-605 (786)
171 PRK06921 hypothetical protein; 97.5 0.00082 1.8E-08 61.3 9.7 72 174-264 116-187 (266)
172 PF00448 SRP54: SRP54-type pro 97.5 0.00085 1.8E-08 58.2 9.2 87 175-263 1-92 (196)
173 COG0470 HolB ATPase involved i 97.4 0.0016 3.4E-08 61.3 11.7 140 156-311 3-169 (325)
174 PF07693 KAP_NTPase: KAP famil 97.4 0.013 2.8E-07 55.1 17.8 40 163-202 5-47 (325)
175 KOG0731 AAA+-type ATPase conta 97.4 0.0022 4.7E-08 65.5 12.9 172 160-352 320-523 (774)
176 PRK07952 DNA replication prote 97.4 0.0016 3.4E-08 58.4 10.8 76 175-266 99-174 (244)
177 PRK14722 flhF flagellar biosyn 97.4 0.0012 2.6E-08 62.7 10.4 89 174-264 136-225 (374)
178 TIGR02012 tigrfam_recA protein 97.4 0.00051 1.1E-08 63.9 7.7 85 174-265 54-144 (321)
179 COG1223 Predicted ATPase (AAA+ 97.4 0.0012 2.6E-08 58.4 9.4 170 154-347 121-319 (368)
180 PRK09183 transposase/IS protei 97.4 0.00044 9.5E-09 62.9 7.1 27 175-201 102-128 (259)
181 KOG0743 AAA+-type ATPase [Post 97.4 0.012 2.6E-07 56.2 16.6 154 176-361 236-417 (457)
182 cd00983 recA RecA is a bacter 97.4 0.00058 1.3E-08 63.6 7.5 84 174-264 54-143 (325)
183 KOG0734 AAA+-type ATPase conta 97.4 0.00062 1.3E-08 65.9 7.7 88 159-266 312-408 (752)
184 KOG0741 AAA+-type ATPase [Post 97.3 0.0075 1.6E-07 58.6 14.8 143 175-343 538-704 (744)
185 PRK09354 recA recombinase A; P 97.3 0.00072 1.6E-08 63.5 8.0 85 174-265 59-149 (349)
186 COG1419 FlhF Flagellar GTP-bin 97.3 0.0025 5.5E-08 60.3 11.5 99 163-264 187-291 (407)
187 KOG1514 Origin recognition com 97.3 0.014 3E-07 58.7 16.8 203 153-357 395-625 (767)
188 PF13207 AAA_17: AAA domain; P 97.3 0.00022 4.7E-09 56.7 3.6 24 177-200 1-24 (121)
189 PLN03187 meiotic recombination 97.3 0.0013 2.8E-08 62.0 9.2 90 174-264 125-231 (344)
190 PRK10733 hflB ATP-dependent me 97.3 0.0024 5.3E-08 65.7 11.8 149 175-345 185-355 (644)
191 CHL00095 clpC Clp protease ATP 97.3 0.00085 1.8E-08 71.1 8.4 131 154-291 509-661 (821)
192 cd01393 recA_like RecA is a b 97.3 0.0028 6E-08 56.3 10.6 91 174-265 18-125 (226)
193 TIGR02238 recomb_DMC1 meiotic 97.3 0.0013 2.9E-08 61.3 8.8 90 174-264 95-201 (313)
194 KOG0733 Nuclear AAA ATPase (VC 97.3 0.0034 7.3E-08 61.9 11.6 131 174-324 544-693 (802)
195 KOG0730 AAA+-type ATPase [Post 97.3 0.0029 6.3E-08 62.9 11.3 152 153-324 433-616 (693)
196 PRK04296 thymidine kinase; Pro 97.2 0.00049 1.1E-08 59.5 5.3 110 176-293 3-117 (190)
197 PRK08699 DNA polymerase III su 97.2 0.0047 1E-07 58.0 12.0 86 256-350 115-203 (325)
198 PRK09361 radB DNA repair and r 97.2 0.002 4.3E-08 57.3 8.9 46 174-222 22-67 (225)
199 KOG0991 Replication factor C, 97.2 0.0011 2.4E-08 57.7 6.8 65 153-217 26-90 (333)
200 COG0542 clpA ATP-binding subun 97.2 0.0014 3.1E-08 67.2 8.7 158 152-323 168-346 (786)
201 cd01120 RecA-like_NTPases RecA 97.2 0.003 6.5E-08 52.5 9.6 39 177-217 1-39 (165)
202 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0032 7E-08 56.5 10.1 49 174-226 20-68 (237)
203 COG1066 Sms Predicted ATP-depe 97.2 0.0023 5E-08 60.3 9.1 86 174-265 92-179 (456)
204 PRK06696 uridine kinase; Valid 97.2 0.00072 1.6E-08 60.1 5.6 44 158-201 2-48 (223)
205 PF08423 Rad51: Rad51; InterP 97.2 0.002 4.3E-08 58.5 8.5 89 175-264 38-143 (256)
206 TIGR02236 recomb_radA DNA repa 97.1 0.0031 6.7E-08 59.0 9.8 91 174-265 94-203 (310)
207 PRK12727 flagellar biosynthesi 97.1 0.0029 6.3E-08 62.4 9.7 89 174-264 349-438 (559)
208 PF07728 AAA_5: AAA domain (dy 97.1 0.0012 2.6E-08 53.8 6.0 43 178-225 2-44 (139)
209 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00065 1.4E-08 63.8 4.9 47 155-201 52-104 (361)
210 PRK04301 radA DNA repair and r 97.1 0.0036 7.9E-08 58.7 10.0 91 174-265 101-209 (317)
211 PHA02244 ATPase-like protein 97.1 0.0042 9.2E-08 58.5 10.2 34 165-200 111-144 (383)
212 PRK08533 flagellar accessory p 97.1 0.0039 8.4E-08 55.6 9.7 54 174-232 23-76 (230)
213 KOG0728 26S proteasome regulat 97.1 0.014 3E-07 51.5 12.5 147 173-339 179-349 (404)
214 PRK06835 DNA replication prote 97.1 0.0031 6.8E-08 59.2 9.3 100 176-291 184-288 (329)
215 KOG0736 Peroxisome assembly fa 97.1 0.0046 9.9E-08 62.6 10.6 98 149-266 667-776 (953)
216 PRK05541 adenylylsulfate kinas 97.0 0.0018 3.8E-08 55.2 6.8 36 174-211 6-41 (176)
217 KOG0744 AAA+-type ATPase [Post 97.0 0.0015 3.2E-08 59.6 6.2 133 175-323 177-340 (423)
218 PLN03186 DNA repair protein RA 97.0 0.0031 6.7E-08 59.5 8.6 91 174-265 122-229 (342)
219 TIGR02858 spore_III_AA stage I 97.0 0.0038 8.3E-08 56.9 8.9 121 164-294 99-231 (270)
220 PTZ00035 Rad51 protein; Provis 97.0 0.0051 1.1E-07 58.0 10.0 91 174-265 117-224 (337)
221 PRK09270 nucleoside triphospha 97.0 0.0052 1.1E-07 54.8 9.6 30 173-202 31-60 (229)
222 TIGR02239 recomb_RAD51 DNA rep 97.0 0.0036 7.8E-08 58.6 8.8 90 174-264 95-201 (316)
223 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0038 8.2E-08 56.6 8.6 91 174-265 68-174 (274)
224 cd01394 radB RadB. The archaea 97.0 0.0039 8.6E-08 55.1 8.7 43 174-218 18-60 (218)
225 PRK00771 signal recognition pa 97.0 0.0072 1.6E-07 58.9 11.1 57 174-232 94-151 (437)
226 COG1618 Predicted nucleotide k 97.0 0.0011 2.3E-08 54.4 4.5 31 177-208 7-37 (179)
227 cd01121 Sms Sms (bacterial rad 97.0 0.004 8.6E-08 59.5 9.2 87 174-265 81-169 (372)
228 COG0467 RAD55 RecA-superfamily 97.0 0.006 1.3E-07 55.5 10.1 51 173-227 21-71 (260)
229 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.0021 4.6E-08 55.0 6.7 24 177-200 1-24 (183)
230 COG0464 SpoVK ATPases of the A 96.9 0.0098 2.1E-07 59.5 12.0 131 174-324 275-424 (494)
231 PRK05703 flhF flagellar biosyn 96.9 0.0044 9.5E-08 60.4 9.2 86 175-263 221-308 (424)
232 PRK15429 formate hydrogenlyase 96.9 0.016 3.5E-07 60.4 14.0 59 155-215 377-437 (686)
233 TIGR00959 ffh signal recogniti 96.9 0.0071 1.5E-07 58.8 10.5 27 174-200 98-124 (428)
234 cd01124 KaiC KaiC is a circadi 96.9 0.0038 8.3E-08 53.5 7.9 45 177-225 1-45 (187)
235 PF00154 RecA: recA bacterial 96.9 0.0051 1.1E-07 57.2 9.0 85 174-265 52-142 (322)
236 PRK06067 flagellar accessory p 96.9 0.0076 1.6E-07 53.9 10.0 86 174-264 24-130 (234)
237 PF10236 DAP3: Mitochondrial r 96.9 0.063 1.4E-06 50.1 16.4 47 304-350 258-306 (309)
238 cd01131 PilT Pilus retraction 96.9 0.002 4.3E-08 56.1 5.9 110 176-295 2-112 (198)
239 KOG0729 26S proteasome regulat 96.9 0.0063 1.4E-07 54.0 8.9 92 153-264 176-280 (435)
240 PRK04328 hypothetical protein; 96.9 0.0056 1.2E-07 55.3 9.0 53 174-231 22-74 (249)
241 PF13481 AAA_25: AAA domain; P 96.9 0.0081 1.7E-07 51.9 9.6 88 175-264 32-151 (193)
242 TIGR02655 circ_KaiC circadian 96.9 0.0077 1.7E-07 59.9 10.6 86 174-264 262-363 (484)
243 PRK10867 signal recognition pa 96.9 0.0069 1.5E-07 58.9 9.8 28 174-201 99-126 (433)
244 PTZ00494 tuzin-like protein; P 96.9 0.11 2.4E-06 50.0 17.3 161 153-323 370-544 (664)
245 PRK12723 flagellar biosynthesi 96.9 0.0061 1.3E-07 58.4 9.2 89 174-264 173-264 (388)
246 PRK06547 hypothetical protein; 96.8 0.0018 3.9E-08 55.0 5.0 35 166-200 6-40 (172)
247 TIGR01817 nifA Nif-specific re 96.8 0.0088 1.9E-07 60.4 10.7 48 153-200 195-244 (534)
248 KOG0739 AAA+-type ATPase [Post 96.8 0.018 3.9E-07 52.1 11.2 71 175-265 166-236 (439)
249 TIGR00554 panK_bact pantothena 96.8 0.0085 1.9E-07 55.1 9.6 28 173-200 60-87 (290)
250 PRK12724 flagellar biosynthesi 96.8 0.0049 1.1E-07 59.2 8.1 84 175-262 223-307 (432)
251 cd01135 V_A-ATPase_B V/A-type 96.8 0.0061 1.3E-07 55.2 8.3 92 174-265 68-177 (276)
252 PRK07132 DNA polymerase III su 96.8 0.081 1.8E-06 49.0 15.8 143 164-322 6-161 (299)
253 PF14532 Sigma54_activ_2: Sigm 96.8 0.00049 1.1E-08 56.2 1.1 44 158-201 2-47 (138)
254 TIGR02974 phageshock_pspF psp 96.8 0.013 2.8E-07 55.2 10.8 44 157-200 2-47 (329)
255 cd02025 PanK Pantothenate kina 96.8 0.0088 1.9E-07 53.0 9.1 24 177-200 1-24 (220)
256 PRK11823 DNA repair protein Ra 96.8 0.0068 1.5E-07 59.6 8.9 87 174-265 79-167 (446)
257 PRK14527 adenylate kinase; Pro 96.7 0.0078 1.7E-07 52.0 8.4 27 174-200 5-31 (191)
258 COG0563 Adk Adenylate kinase a 96.7 0.0023 5E-08 54.5 4.9 24 177-200 2-25 (178)
259 cd00544 CobU Adenosylcobinamid 96.7 0.0081 1.8E-07 50.7 8.1 81 178-264 2-83 (169)
260 PRK11889 flhF flagellar biosyn 96.7 0.011 2.3E-07 56.4 9.5 39 174-214 240-278 (436)
261 COG1102 Cmk Cytidylate kinase 96.7 0.0023 4.9E-08 52.6 4.4 45 177-234 2-46 (179)
262 COG0468 RecA RecA/RadA recombi 96.7 0.013 2.8E-07 53.4 9.8 88 174-265 59-152 (279)
263 PF06745 KaiC: KaiC; InterPro 96.7 0.0047 1E-07 54.9 6.9 87 174-264 18-125 (226)
264 PF13671 AAA_33: AAA domain; P 96.7 0.0016 3.4E-08 53.3 3.6 24 177-200 1-24 (143)
265 PF13238 AAA_18: AAA domain; P 96.7 0.0015 3.2E-08 52.2 3.3 22 178-199 1-22 (129)
266 TIGR01425 SRP54_euk signal rec 96.7 0.12 2.5E-06 50.3 16.6 28 174-201 99-126 (429)
267 cd03281 ABC_MSH5_euk MutS5 hom 96.7 0.0024 5.2E-08 56.3 4.6 24 175-198 29-52 (213)
268 PRK09519 recA DNA recombinatio 96.7 0.0077 1.7E-07 62.4 8.8 84 174-264 59-148 (790)
269 TIGR03878 thermo_KaiC_2 KaiC d 96.7 0.0091 2E-07 54.3 8.5 40 174-215 35-74 (259)
270 PRK14723 flhF flagellar biosyn 96.6 0.022 4.7E-07 58.9 12.0 39 175-213 185-223 (767)
271 COG2607 Predicted ATPase (AAA+ 96.6 0.016 3.4E-07 50.9 9.3 50 153-202 59-112 (287)
272 cd03115 SRP The signal recogni 96.6 0.009 2E-07 50.7 8.0 26 177-202 2-27 (173)
273 PRK15455 PrkA family serine pr 96.6 0.0027 5.9E-08 63.0 5.2 47 155-201 77-129 (644)
274 PRK12726 flagellar biosynthesi 96.6 0.016 3.5E-07 54.9 10.2 89 174-264 205-295 (407)
275 PRK05439 pantothenate kinase; 96.6 0.018 3.8E-07 53.5 10.3 28 173-200 84-111 (311)
276 PRK14721 flhF flagellar biosyn 96.6 0.02 4.4E-07 55.3 11.1 60 174-233 190-250 (420)
277 PF00485 PRK: Phosphoribulokin 96.6 0.0019 4.1E-08 56.1 3.7 26 177-202 1-26 (194)
278 cd02027 APSK Adenosine 5'-phos 96.6 0.015 3.3E-07 48.0 8.9 24 177-200 1-24 (149)
279 COG1875 NYN ribonuclease and A 96.6 0.014 3.1E-07 54.3 9.3 43 156-198 226-268 (436)
280 PRK14974 cell division protein 96.6 0.023 5E-07 53.5 11.0 89 174-265 139-233 (336)
281 PF00006 ATP-synt_ab: ATP synt 96.6 0.0072 1.6E-07 53.1 7.1 86 175-264 15-115 (215)
282 PF03205 MobB: Molybdopterin g 96.6 0.0048 1E-07 50.4 5.5 39 176-215 1-39 (140)
283 KOG0735 AAA+-type ATPase [Post 96.6 0.067 1.5E-06 54.0 14.3 150 176-349 702-872 (952)
284 COG0194 Gmk Guanylate kinase [ 96.6 0.012 2.5E-07 49.8 7.8 25 175-199 4-28 (191)
285 COG4088 Predicted nucleotide k 96.6 0.0016 3.6E-08 55.6 2.6 27 176-202 2-28 (261)
286 PRK06995 flhF flagellar biosyn 96.5 0.019 4E-07 56.6 10.3 58 175-232 256-314 (484)
287 PRK07667 uridine kinase; Provi 96.5 0.0037 7.9E-08 54.2 4.9 38 164-201 4-43 (193)
288 PRK08233 hypothetical protein; 96.5 0.0022 4.8E-08 54.7 3.5 26 175-200 3-28 (182)
289 cd02019 NK Nucleoside/nucleoti 96.5 0.0024 5.3E-08 45.2 3.0 23 177-199 1-23 (69)
290 PTZ00301 uridine kinase; Provi 96.5 0.0069 1.5E-07 53.1 6.4 26 175-200 3-28 (210)
291 PF03215 Rad17: Rad17 cell cyc 96.5 0.0037 7.9E-08 62.3 5.2 57 153-213 18-79 (519)
292 PRK05480 uridine/cytidine kina 96.5 0.0027 5.9E-08 55.7 3.8 27 173-199 4-30 (209)
293 PRK11608 pspF phage shock prot 96.5 0.006 1.3E-07 57.5 6.3 45 155-199 7-53 (326)
294 PRK12597 F0F1 ATP synthase sub 96.5 0.01 2.2E-07 58.0 7.9 90 174-264 142-247 (461)
295 PRK06762 hypothetical protein; 96.5 0.0027 5.9E-08 53.5 3.6 25 175-199 2-26 (166)
296 CHL00206 ycf2 Ycf2; Provisiona 96.5 0.026 5.5E-07 63.1 11.5 28 174-201 1629-1656(2281)
297 COG2884 FtsE Predicted ATPase 96.5 0.022 4.7E-07 48.3 8.6 28 174-201 27-54 (223)
298 PF08433 KTI12: Chromatin asso 96.4 0.012 2.7E-07 53.6 7.9 26 176-201 2-27 (270)
299 TIGR00235 udk uridine kinase. 96.4 0.0029 6.3E-08 55.5 3.7 28 173-200 4-31 (207)
300 PF12775 AAA_7: P-loop contain 96.4 0.0029 6.2E-08 57.9 3.7 55 165-222 24-78 (272)
301 PF01583 APS_kinase: Adenylyls 96.4 0.0039 8.4E-08 51.7 4.1 28 175-202 2-29 (156)
302 TIGR00416 sms DNA repair prote 96.4 0.014 3E-07 57.5 8.6 87 174-265 93-181 (454)
303 PRK13531 regulatory ATPase Rav 96.4 0.0057 1.2E-07 59.7 5.8 45 155-201 21-65 (498)
304 PRK05973 replicative DNA helic 96.4 0.026 5.6E-07 50.3 9.5 49 174-226 63-111 (237)
305 TIGR01360 aden_kin_iso1 adenyl 96.4 0.0032 6.9E-08 54.1 3.7 26 174-199 2-27 (188)
306 COG3854 SpoIIIAA ncharacterize 96.4 0.011 2.4E-07 51.5 6.8 119 166-294 128-255 (308)
307 PF00910 RNA_helicase: RNA hel 96.4 0.0026 5.6E-08 49.4 2.7 24 178-201 1-24 (107)
308 TIGR03305 alt_F1F0_F1_bet alte 96.4 0.013 2.7E-07 57.0 7.9 90 174-264 137-242 (449)
309 TIGR01069 mutS2 MutS2 family p 96.4 0.0037 8E-08 65.4 4.5 189 174-380 321-524 (771)
310 PRK08972 fliI flagellum-specif 96.4 0.013 2.7E-07 56.8 7.8 87 174-264 161-262 (444)
311 PF13245 AAA_19: Part of AAA d 96.4 0.011 2.5E-07 42.6 5.8 26 174-199 9-34 (76)
312 TIGR03881 KaiC_arch_4 KaiC dom 96.3 0.04 8.6E-07 49.0 10.6 48 174-225 19-66 (229)
313 TIGR00064 ftsY signal recognit 96.3 0.036 7.9E-07 50.7 10.1 39 174-214 71-109 (272)
314 PRK00409 recombination and DNA 96.3 0.0021 4.6E-08 67.4 2.2 190 174-380 326-529 (782)
315 PF07726 AAA_3: ATPase family 96.3 0.0046 9.9E-08 49.1 3.6 40 178-222 2-41 (131)
316 PF05970 PIF1: PIF1-like helic 96.3 0.012 2.5E-07 56.5 7.0 39 163-201 10-48 (364)
317 TIGR00150 HI0065_YjeE ATPase, 96.3 0.0079 1.7E-07 48.4 5.0 29 174-202 21-49 (133)
318 PF05659 RPW8: Arabidopsis bro 96.3 0.06 1.3E-06 44.2 10.2 110 2-127 3-113 (147)
319 TIGR01650 PD_CobS cobaltochela 96.3 0.019 4E-07 53.5 8.1 63 155-224 46-108 (327)
320 PRK05917 DNA polymerase III su 96.3 0.11 2.4E-06 47.7 12.9 131 163-310 6-154 (290)
321 PRK13765 ATP-dependent proteas 96.2 0.0095 2.1E-07 60.8 6.6 78 151-232 28-105 (637)
322 COG0465 HflB ATP-dependent Zn 96.2 0.031 6.7E-07 56.0 10.0 173 155-349 151-357 (596)
323 cd01122 GP4d_helicase GP4d_hel 96.2 0.044 9.5E-07 50.1 10.5 51 175-228 30-80 (271)
324 PTZ00088 adenylate kinase 1; P 96.2 0.0039 8.6E-08 55.4 3.4 23 178-200 9-31 (229)
325 PRK04040 adenylate kinase; Pro 96.2 0.0042 9.2E-08 53.5 3.5 47 175-232 2-48 (188)
326 PRK06217 hypothetical protein; 96.2 0.023 4.9E-07 48.7 8.1 25 177-201 3-27 (183)
327 PRK00131 aroK shikimate kinase 96.2 0.0047 1E-07 52.3 3.8 27 174-200 3-29 (175)
328 cd03247 ABCC_cytochrome_bd The 96.2 0.015 3.3E-07 49.6 6.9 26 174-199 27-52 (178)
329 TIGR03574 selen_PSTK L-seryl-t 96.2 0.011 2.5E-07 53.3 6.5 25 177-201 1-25 (249)
330 PRK03839 putative kinase; Prov 96.2 0.0043 9.4E-08 53.0 3.5 24 177-200 2-25 (180)
331 COG0541 Ffh Signal recognition 96.2 0.73 1.6E-05 44.3 18.3 58 174-233 99-157 (451)
332 cd00984 DnaB_C DnaB helicase C 96.2 0.05 1.1E-06 48.8 10.6 51 174-227 12-62 (242)
333 KOG1532 GTPase XAB1, interacts 96.2 0.0062 1.3E-07 54.3 4.3 60 174-235 18-88 (366)
334 PLN02924 thymidylate kinase 96.2 0.029 6.3E-07 49.6 8.6 53 175-228 16-68 (220)
335 PF03308 ArgK: ArgK protein; 96.2 0.011 2.5E-07 52.7 5.9 61 163-223 15-77 (266)
336 PRK08927 fliI flagellum-specif 96.2 0.023 5E-07 55.2 8.5 87 174-264 157-258 (442)
337 TIGR01420 pilT_fam pilus retra 96.2 0.014 2.9E-07 55.5 6.9 112 174-294 121-232 (343)
338 TIGR00764 lon_rel lon-related 96.2 0.017 3.7E-07 59.0 7.9 76 153-232 17-92 (608)
339 PRK00279 adk adenylate kinase; 96.2 0.02 4.3E-07 50.5 7.4 24 177-200 2-25 (215)
340 COG4608 AppF ABC-type oligopep 96.2 0.02 4.3E-07 51.4 7.3 120 174-297 38-175 (268)
341 COG1703 ArgK Putative periplas 96.1 0.0088 1.9E-07 54.2 5.1 62 164-225 38-101 (323)
342 PF00625 Guanylate_kin: Guanyl 96.1 0.0075 1.6E-07 51.7 4.6 37 175-213 2-38 (183)
343 PRK14531 adenylate kinase; Pro 96.1 0.015 3.3E-07 49.8 6.5 24 177-200 4-27 (183)
344 PF02562 PhoH: PhoH-like prote 96.1 0.009 2E-07 51.9 5.0 125 159-293 5-157 (205)
345 cd03214 ABC_Iron-Siderophores_ 96.1 0.035 7.5E-07 47.5 8.6 117 174-294 24-160 (180)
346 PF03266 NTPase_1: NTPase; In 96.1 0.0053 1.1E-07 51.9 3.4 24 178-201 2-25 (168)
347 TIGR00390 hslU ATP-dependent p 96.1 0.018 3.9E-07 55.3 7.3 47 155-201 13-73 (441)
348 PRK01184 hypothetical protein; 96.1 0.039 8.4E-07 47.3 8.9 21 176-197 2-22 (184)
349 COG0572 Udk Uridine kinase [Nu 96.1 0.0057 1.2E-07 53.2 3.6 28 174-201 7-34 (218)
350 PF07724 AAA_2: AAA domain (Cd 96.1 0.0039 8.4E-08 52.8 2.5 43 175-218 3-45 (171)
351 PRK14532 adenylate kinase; Pro 96.1 0.024 5.3E-07 48.7 7.6 22 178-199 3-24 (188)
352 PRK08149 ATP synthase SpaL; Va 96.1 0.023 5E-07 55.0 8.1 87 174-264 150-251 (428)
353 PF08477 Miro: Miro-like prote 96.1 0.0055 1.2E-07 48.2 3.2 24 178-201 2-25 (119)
354 cd00227 CPT Chloramphenicol (C 96.1 0.0061 1.3E-07 51.9 3.7 26 175-200 2-27 (175)
355 TIGR02322 phosphon_PhnN phosph 96.1 0.0055 1.2E-07 52.3 3.4 25 176-200 2-26 (179)
356 PRK11388 DNA-binding transcrip 96.0 0.08 1.7E-06 54.8 12.4 47 154-200 325-373 (638)
357 PF13086 AAA_11: AAA domain; P 96.0 0.017 3.7E-07 51.1 6.7 52 177-228 19-75 (236)
358 PRK14528 adenylate kinase; Pro 96.0 0.023 5.1E-07 48.8 7.2 25 176-200 2-26 (186)
359 PRK05022 anaerobic nitric oxid 96.0 0.016 3.5E-07 58.1 7.0 61 154-216 187-249 (509)
360 TIGR01351 adk adenylate kinase 96.0 0.027 5.9E-07 49.4 7.7 23 178-200 2-24 (210)
361 COG3640 CooC CO dehydrogenase 96.0 0.015 3.2E-07 50.9 5.7 41 177-218 2-42 (255)
362 COG4240 Predicted kinase [Gene 96.0 0.05 1.1E-06 47.4 8.8 81 173-254 48-133 (300)
363 KOG0652 26S proteasome regulat 96.0 0.43 9.3E-06 42.6 14.7 95 150-264 167-274 (424)
364 PRK15424 propionate catabolism 96.0 0.067 1.4E-06 53.7 11.2 45 154-198 219-265 (538)
365 PRK05800 cobU adenosylcobinami 96.0 0.023 4.9E-07 48.1 6.8 80 177-264 3-86 (170)
366 PRK09280 F0F1 ATP synthase sub 96.0 0.029 6.3E-07 54.8 8.3 90 174-264 143-248 (463)
367 cd02023 UMPK Uridine monophosp 96.0 0.0051 1.1E-07 53.5 2.9 23 177-199 1-23 (198)
368 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.023 4.9E-07 47.3 6.6 114 176-292 3-138 (159)
369 TIGR01039 atpD ATP synthase, F 96.0 0.034 7.3E-07 54.1 8.7 90 174-264 142-247 (461)
370 PF00406 ADK: Adenylate kinase 96.0 0.02 4.3E-07 47.3 6.4 21 180-200 1-21 (151)
371 TIGR02655 circ_KaiC circadian 96.0 0.043 9.4E-07 54.7 9.8 48 174-225 20-68 (484)
372 PRK06002 fliI flagellum-specif 96.0 0.026 5.6E-07 54.9 7.9 88 174-264 164-264 (450)
373 PRK00625 shikimate kinase; Pro 96.0 0.0063 1.4E-07 51.7 3.3 24 177-200 2-25 (173)
374 COG0714 MoxR-like ATPases [Gen 96.0 0.02 4.4E-07 54.0 7.1 64 155-225 25-88 (329)
375 TIGR00708 cobA cob(I)alamin ad 95.9 0.056 1.2E-06 45.6 8.7 115 175-292 5-140 (173)
376 PF00158 Sigma54_activat: Sigm 95.9 0.028 6.1E-07 47.4 7.1 44 157-200 2-47 (168)
377 PRK10751 molybdopterin-guanine 95.9 0.0085 1.8E-07 50.6 3.8 28 174-201 5-32 (173)
378 cd02021 GntK Gluconate kinase 95.9 0.006 1.3E-07 50.4 2.9 23 177-199 1-23 (150)
379 PF03193 DUF258: Protein of un 95.9 0.011 2.3E-07 49.3 4.3 36 161-199 24-59 (161)
380 PRK06936 type III secretion sy 95.9 0.026 5.6E-07 54.8 7.5 87 174-264 161-262 (439)
381 PLN02165 adenylate isopentenyl 95.9 0.011 2.3E-07 55.2 4.7 31 170-200 38-68 (334)
382 cd03223 ABCD_peroxisomal_ALDP 95.9 0.042 9.2E-07 46.3 8.1 27 174-200 26-52 (166)
383 TIGR00750 lao LAO/AO transport 95.9 0.033 7.1E-07 51.8 8.0 39 164-202 21-61 (300)
384 PRK14529 adenylate kinase; Pro 95.9 0.031 6.8E-07 49.4 7.4 84 178-266 3-88 (223)
385 COG1643 HrpA HrpA-like helicas 95.9 0.029 6.3E-07 58.7 8.2 126 162-292 54-205 (845)
386 PHA02774 E1; Provisional 95.9 0.015 3.4E-07 57.7 5.8 49 162-214 420-469 (613)
387 PRK14737 gmk guanylate kinase; 95.9 0.0076 1.7E-07 51.8 3.3 26 174-199 3-28 (186)
388 TIGR01041 ATP_syn_B_arch ATP s 95.9 0.037 8.1E-07 54.1 8.4 91 174-264 140-248 (458)
389 PRK12678 transcription termina 95.9 0.033 7.1E-07 55.4 7.9 90 174-264 415-513 (672)
390 TIGR03263 guanyl_kin guanylate 95.8 0.0069 1.5E-07 51.7 3.0 24 176-199 2-25 (180)
391 cd02020 CMPK Cytidine monophos 95.8 0.0074 1.6E-07 49.4 3.0 24 177-200 1-24 (147)
392 KOG3347 Predicted nucleotide k 95.8 0.0062 1.3E-07 49.3 2.4 71 175-254 7-77 (176)
393 cd01125 repA Hexameric Replica 95.8 0.056 1.2E-06 48.5 9.0 24 177-200 3-26 (239)
394 PRK05922 type III secretion sy 95.8 0.034 7.3E-07 53.9 7.9 87 174-264 156-257 (434)
395 TIGR00455 apsK adenylylsulfate 95.8 0.043 9.3E-07 47.0 7.9 29 173-201 16-44 (184)
396 CHL00060 atpB ATP synthase CF1 95.8 0.041 8.9E-07 54.0 8.4 90 174-264 160-272 (494)
397 cd02028 UMPK_like Uridine mono 95.8 0.0079 1.7E-07 51.4 3.1 25 177-201 1-25 (179)
398 CHL00081 chlI Mg-protoporyphyr 95.8 0.015 3.2E-07 54.9 5.2 51 151-201 14-64 (350)
399 cd02024 NRK1 Nicotinamide ribo 95.8 0.0075 1.6E-07 51.8 2.9 23 177-199 1-23 (187)
400 PRK00300 gmk guanylate kinase; 95.8 0.0092 2E-07 52.1 3.6 26 174-199 4-29 (205)
401 KOG0737 AAA+-type ATPase [Post 95.8 0.069 1.5E-06 49.9 9.2 29 174-202 126-154 (386)
402 PRK09302 circadian clock prote 95.8 0.059 1.3E-06 54.2 9.8 86 174-264 272-373 (509)
403 cd01132 F1_ATPase_alpha F1 ATP 95.8 0.043 9.3E-07 49.8 7.8 95 174-272 68-180 (274)
404 TIGR01040 V-ATPase_V1_B V-type 95.8 0.042 9.1E-07 53.4 8.2 91 174-264 140-257 (466)
405 PRK09302 circadian clock prote 95.7 0.065 1.4E-06 53.8 10.0 50 174-226 30-79 (509)
406 cd01134 V_A-ATPase_A V/A-type 95.7 0.082 1.8E-06 49.6 9.7 49 174-226 156-205 (369)
407 COG3598 RepA RecA-family ATPas 95.7 0.037 8.1E-07 50.7 7.2 88 177-264 91-204 (402)
408 PTZ00185 ATPase alpha subunit; 95.7 0.085 1.9E-06 51.9 10.1 90 174-264 188-299 (574)
409 PRK14738 gmk guanylate kinase; 95.7 0.0095 2.1E-07 52.2 3.4 25 174-198 12-36 (206)
410 KOG0727 26S proteasome regulat 95.7 0.054 1.2E-06 47.9 7.9 72 173-264 187-258 (408)
411 cd01129 PulE-GspE PulE/GspE Th 95.7 0.027 5.7E-07 51.4 6.4 117 164-294 70-186 (264)
412 cd01672 TMPK Thymidine monopho 95.7 0.035 7.6E-07 47.9 7.0 25 177-201 2-26 (200)
413 cd01136 ATPase_flagellum-secre 95.7 0.066 1.4E-06 50.1 9.1 87 174-264 68-169 (326)
414 cd00071 GMPK Guanosine monopho 95.7 0.0082 1.8E-07 48.9 2.7 24 177-200 1-24 (137)
415 PRK07933 thymidylate kinase; V 95.7 0.058 1.3E-06 47.5 8.3 26 177-202 2-27 (213)
416 TIGR03496 FliI_clade1 flagella 95.7 0.04 8.8E-07 53.3 7.9 87 174-264 136-237 (411)
417 cd02029 PRK_like Phosphoribulo 95.7 0.037 8.1E-07 49.9 7.1 25 177-201 1-25 (277)
418 PRK00889 adenylylsulfate kinas 95.7 0.012 2.6E-07 50.1 3.8 28 174-201 3-30 (175)
419 TIGR00176 mobB molybdopterin-g 95.7 0.017 3.6E-07 48.1 4.6 35 177-212 1-35 (155)
420 TIGR00073 hypB hydrogenase acc 95.7 0.012 2.6E-07 51.6 3.9 31 170-200 17-47 (207)
421 PRK10875 recD exonuclease V su 95.7 0.03 6.6E-07 57.0 7.2 53 175-227 167-220 (615)
422 PRK14530 adenylate kinase; Pro 95.7 0.01 2.3E-07 52.3 3.5 25 176-200 4-28 (215)
423 PRK05748 replicative DNA helic 95.6 0.45 9.7E-06 47.0 15.3 54 174-230 202-255 (448)
424 cd03287 ABC_MSH3_euk MutS3 hom 95.6 0.013 2.8E-07 51.9 4.0 24 174-197 30-53 (222)
425 COG1936 Predicted nucleotide k 95.6 0.0092 2E-07 49.7 2.8 20 177-196 2-21 (180)
426 PRK13975 thymidylate kinase; P 95.6 0.011 2.4E-07 51.2 3.5 26 176-201 3-28 (196)
427 TIGR01313 therm_gnt_kin carboh 95.6 0.0083 1.8E-07 50.3 2.6 22 178-199 1-22 (163)
428 COG1126 GlnQ ABC-type polar am 95.6 0.0096 2.1E-07 51.5 3.0 36 174-212 27-62 (240)
429 KOG1051 Chaperone HSP104 and r 95.6 0.063 1.4E-06 56.3 9.3 101 156-266 564-672 (898)
430 PRK00698 tmk thymidylate kinas 95.6 0.037 8.1E-07 48.1 6.8 28 175-202 3-30 (205)
431 TIGR03498 FliI_clade3 flagella 95.6 0.033 7.1E-07 54.0 6.8 87 174-264 139-240 (418)
432 PRK13949 shikimate kinase; Pro 95.6 0.011 2.3E-07 50.1 3.2 24 177-200 3-26 (169)
433 PRK13947 shikimate kinase; Pro 95.6 0.011 2.3E-07 50.0 3.2 25 177-201 3-27 (171)
434 TIGR03600 phage_DnaB phage rep 95.6 2.6 5.6E-05 41.3 20.7 53 175-230 194-246 (421)
435 COG0529 CysC Adenylylsulfate k 95.6 0.02 4.2E-07 47.9 4.4 33 170-202 18-50 (197)
436 PRK10463 hydrogenase nickel in 95.6 0.031 6.7E-07 51.2 6.2 34 168-201 97-130 (290)
437 smart00534 MUTSac ATPase domai 95.6 0.0067 1.5E-07 52.2 1.8 22 177-198 1-22 (185)
438 PF03029 ATP_bind_1: Conserved 95.5 0.016 3.5E-07 51.9 4.3 34 180-215 1-34 (238)
439 PRK15453 phosphoribulokinase; 95.5 0.11 2.3E-06 47.4 9.5 28 173-200 3-30 (290)
440 PRK07594 type III secretion sy 95.5 0.042 9.1E-07 53.3 7.4 88 173-264 153-255 (433)
441 KOG0738 AAA+-type ATPase [Post 95.5 0.02 4.4E-07 53.7 4.9 26 176-201 246-271 (491)
442 TIGR03880 KaiC_arch_3 KaiC dom 95.5 0.071 1.5E-06 47.2 8.4 48 174-225 15-62 (224)
443 PRK10078 ribose 1,5-bisphospho 95.5 0.011 2.3E-07 50.9 3.0 24 176-199 3-26 (186)
444 PF13604 AAA_30: AAA domain; P 95.5 0.028 6E-07 48.8 5.6 37 166-202 9-45 (196)
445 PF06309 Torsin: Torsin; Inte 95.5 0.024 5.2E-07 44.9 4.6 37 163-199 38-77 (127)
446 PF09848 DUF2075: Uncharacteri 95.5 0.065 1.4E-06 51.1 8.5 41 176-216 2-42 (352)
447 PRK12339 2-phosphoglycerate ki 95.5 0.014 3E-07 50.7 3.6 25 175-199 3-27 (197)
448 cd00464 SK Shikimate kinase (S 95.5 0.013 2.8E-07 48.5 3.2 23 178-200 2-24 (154)
449 PRK04196 V-type ATP synthase s 95.5 0.052 1.1E-06 53.3 7.9 90 174-264 142-250 (460)
450 PRK06731 flhF flagellar biosyn 95.5 0.11 2.4E-06 47.3 9.5 89 174-264 74-164 (270)
451 PRK03846 adenylylsulfate kinas 95.5 0.022 4.7E-07 49.6 4.8 29 173-201 22-50 (198)
452 cd00820 PEPCK_HprK Phosphoenol 95.5 0.013 2.7E-07 45.3 2.9 22 175-196 15-36 (107)
453 TIGR02030 BchI-ChlI magnesium 95.5 0.026 5.6E-07 53.2 5.5 47 153-199 3-49 (337)
454 COG1116 TauB ABC-type nitrate/ 95.5 0.012 2.6E-07 52.1 3.1 25 174-198 28-52 (248)
455 PRK13695 putative NTPase; Prov 95.5 0.022 4.8E-07 48.3 4.7 34 177-211 2-35 (174)
456 COG2019 AdkA Archaeal adenylat 95.4 0.015 3.2E-07 48.1 3.4 47 175-233 4-50 (189)
457 PRK09099 type III secretion sy 95.4 0.047 1E-06 53.2 7.3 87 174-264 162-263 (441)
458 TIGR00041 DTMP_kinase thymidyl 95.4 0.047 1E-06 47.2 6.8 26 176-201 4-29 (195)
459 PRK10820 DNA-binding transcrip 95.4 0.026 5.6E-07 56.7 5.8 60 154-215 204-265 (520)
460 PRK05201 hslU ATP-dependent pr 95.4 0.038 8.2E-07 53.1 6.5 48 154-201 15-76 (443)
461 PRK05688 fliI flagellum-specif 95.4 0.066 1.4E-06 52.2 8.1 87 174-264 167-268 (451)
462 PRK05057 aroK shikimate kinase 95.4 0.016 3.5E-07 49.1 3.6 26 175-200 4-29 (172)
463 PRK06851 hypothetical protein; 95.4 0.028 6E-07 53.4 5.4 44 172-216 211-254 (367)
464 PF13521 AAA_28: AAA domain; P 95.4 0.014 2.9E-07 49.1 3.0 21 178-198 2-22 (163)
465 PF02374 ArsA_ATPase: Anion-tr 95.4 0.033 7.2E-07 51.8 5.9 27 176-202 2-28 (305)
466 PF08298 AAA_PrkA: PrkA AAA do 95.4 0.023 5E-07 53.1 4.7 48 154-201 61-114 (358)
467 PLN02200 adenylate kinase fami 95.4 0.016 3.5E-07 51.7 3.7 27 174-200 42-68 (234)
468 PRK06851 hypothetical protein; 95.3 0.031 6.8E-07 53.0 5.7 44 172-216 27-70 (367)
469 PRK13407 bchI magnesium chelat 95.3 0.024 5.3E-07 53.3 4.9 47 153-199 7-53 (334)
470 COG1428 Deoxynucleoside kinase 95.3 0.036 7.7E-07 47.9 5.4 27 175-201 4-30 (216)
471 KOG0736 Peroxisome assembly fa 95.3 0.2 4.3E-06 51.3 11.4 168 155-346 402-597 (953)
472 COG3910 Predicted ATPase [Gene 95.3 0.12 2.5E-06 43.9 8.3 26 174-199 36-61 (233)
473 COG0055 AtpD F0F1-type ATP syn 95.3 0.062 1.4E-06 50.2 7.3 90 175-265 147-252 (468)
474 COG1124 DppF ABC-type dipeptid 95.3 0.015 3.1E-07 51.3 3.0 26 174-199 32-57 (252)
475 PRK09435 membrane ATPase/prote 95.3 0.051 1.1E-06 51.0 6.9 38 165-202 44-83 (332)
476 TIGR01287 nifH nitrogenase iro 95.3 0.018 3.8E-07 52.9 3.7 27 176-202 1-27 (275)
477 PF02367 UPF0079: Uncharacteri 95.3 0.025 5.4E-07 44.9 4.0 29 174-202 14-42 (123)
478 COG1763 MobB Molybdopterin-gua 95.2 0.02 4.2E-07 47.8 3.5 29 175-203 2-30 (161)
479 PRK13974 thymidylate kinase; P 95.2 0.16 3.5E-06 44.6 9.6 28 176-203 4-31 (212)
480 COG1136 SalX ABC-type antimicr 95.2 0.016 3.5E-07 51.0 3.1 25 174-198 30-54 (226)
481 PLN02674 adenylate kinase 95.2 0.1 2.3E-06 46.7 8.3 26 175-200 31-56 (244)
482 PRK07721 fliI flagellum-specif 95.2 0.079 1.7E-06 51.7 8.1 89 173-264 156-258 (438)
483 PRK06761 hypothetical protein; 95.2 0.038 8.2E-07 50.6 5.5 33 176-209 4-36 (282)
484 PRK08472 fliI flagellum-specif 95.2 0.07 1.5E-06 51.9 7.6 85 173-264 155-256 (434)
485 PRK08760 replicative DNA helic 95.2 0.88 1.9E-05 45.2 15.5 54 174-230 228-281 (476)
486 PRK06793 fliI flagellum-specif 95.1 0.089 1.9E-06 51.1 8.2 89 174-266 155-258 (432)
487 PRK07196 fliI flagellum-specif 95.1 0.065 1.4E-06 52.1 7.3 26 174-199 154-179 (434)
488 PLN02459 probable adenylate ki 95.1 0.12 2.7E-06 46.6 8.6 24 177-200 31-54 (261)
489 cd01428 ADK Adenylate kinase ( 95.1 0.018 3.8E-07 49.7 3.2 22 178-199 2-23 (194)
490 COG1224 TIP49 DNA helicase TIP 95.1 0.049 1.1E-06 50.7 6.0 54 153-206 38-96 (450)
491 cd03284 ABC_MutS1 MutS1 homolo 95.1 0.026 5.6E-07 49.8 4.2 22 176-197 31-52 (216)
492 PF00005 ABC_tran: ABC transpo 95.1 0.017 3.6E-07 46.8 2.7 26 175-200 11-36 (137)
493 KOG0924 mRNA splicing factor A 95.1 0.07 1.5E-06 53.5 7.3 120 164-291 362-509 (1042)
494 TIGR03497 FliI_clade2 flagella 95.1 0.088 1.9E-06 51.0 8.0 87 174-264 136-237 (413)
495 cd03282 ABC_MSH4_euk MutS4 hom 95.1 0.1 2.2E-06 45.5 7.8 25 174-198 28-52 (204)
496 TIGR02173 cyt_kin_arch cytidyl 95.1 0.021 4.6E-07 48.1 3.4 24 177-200 2-25 (171)
497 smart00072 GuKc Guanylate kina 95.1 0.023 4.9E-07 48.8 3.6 25 175-199 2-26 (184)
498 PF03969 AFG1_ATPase: AFG1-lik 95.1 0.025 5.5E-07 53.8 4.2 77 174-264 61-137 (362)
499 TIGR02546 III_secr_ATP type II 95.1 0.15 3.3E-06 49.6 9.6 88 173-264 143-245 (422)
500 PRK05986 cob(I)alamin adenolsy 95.0 0.074 1.6E-06 45.6 6.5 117 174-292 21-158 (191)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-45 Score=377.91 Aligned_cols=336 Identities=27% Similarity=0.440 Sum_probs=259.8
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhhhhhhc-----------------cccc
Q 042806 38 NLKTEVGIPEAERVSKQREVDKAKRRGEEIEEYVEKWLTSVNGIIDEAEKFTGVDARAN-----------------KRCF 100 (390)
Q Consensus 38 ~l~~~l~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~l~~~~~d~ed~ld~~~~~~-----------------~~~~ 100 (390)
..++.+..|+..|..+++++++++.+. .....+..|...++++.|++||.++.+.-.. ..|+
T Consensus 25 ~~~~~i~~Lk~~L~~l~~~l~d~~a~~-~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~ 103 (889)
T KOG4658|consen 25 GKDNYILELKENLKALQSALEDLDAKR-DDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCL 103 (889)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhh
Confidence 444455566666666666788888775 3478899999999999999999998643111 1122
Q ss_pred cCcCC-ChhHHhhHHHHHHHHHHHHHHHHhcCCCCccccccCCCC-cccccccCcccccchhHHHHHHHHHhcCCCccEE
Q 042806 101 KGLCP-NLKTRRRLSKEAERQKEAIVKVREVGRFDRISYNIIPDD-TLLLSIKDYEACESRMSTLNDILDALKNPDVNML 178 (390)
Q Consensus 101 ~~~~~-~~~~r~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi 178 (390)
...+. .+..-+.+++++.++...++.+...+.|..+.....|.+ ....+..+... +|.+..++++.+.|.+++..++
T Consensus 104 ~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv 182 (889)
T KOG4658|consen 104 CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVGIV 182 (889)
T ss_pred hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCCEE
Confidence 11111 122233444444444444554433333433332111111 11122222223 9999999999999999888999
Q ss_pred EEEcCCCCcHHHHHHHHHHHhh-hcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CchHHHHHHHHHHhCCC
Q 042806 179 GIYGMGGIVKTTLAKEVARKAE-TEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE---SDSGRARSLRNRLKKEK 254 (390)
Q Consensus 179 ~I~G~~GvGKTtLa~~v~~~~~-~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~l~~~l~~~~ 254 (390)
+|+||||+||||||++++|+.. ++.+|+..+||.||+.++...++.+|+..++...... ........+.+.|..+|
T Consensus 183 ~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~kr 262 (889)
T KOG4658|consen 183 GIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKR 262 (889)
T ss_pred EEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCc
Confidence 9999999999999999999998 8889999999999999999999999999998744332 33567778888888766
Q ss_pred eEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCC--CCCCch
Q 042806 255 TILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDY--IEGSEF 332 (390)
Q Consensus 255 ~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~--~~~~~~ 332 (390)
|||||||||+..+|+.++.++|...+||+|++|||+..|+...++....+++.+|+++|||+||++.++.. ...+.+
T Consensus 263 -fllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i 341 (889)
T KOG4658|consen 263 -FLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDI 341 (889)
T ss_pred -eEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccH
Confidence 99999999999999999999999999999999999999988768888899999999999999999999833 334558
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhcCCCCCCCcccchhHHHHHhhh
Q 042806 333 KWVAKDVARECAGLPVSIVTVARALGTRDYLNGRTHWNSWGGLLQLT 379 (390)
Q Consensus 333 ~~~~~~i~~~~~GlPLai~~l~~~L~~~~~~~~~~~w~~~~~~l~~~ 379 (390)
+++|++++++|+|+|||+.++|+.|++|.. ..+|+++...|.+.
T Consensus 342 ~~lak~v~~kC~GLPLAl~viG~~ma~K~t---~~eW~~~~~~l~s~ 385 (889)
T KOG4658|consen 342 EELAKEVAEKCGGLPLALNVLGGLLACKKT---VQEWRRALNVLKSS 385 (889)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHhcCCCc---HHHHHHHHcccccc
Confidence 999999999999999999999999999987 78999999988776
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.3e-35 Score=273.42 Aligned_cols=218 Identities=30% Similarity=0.465 Sum_probs=173.5
Q ss_pred hhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-
Q 042806 159 RMSTLNDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLH- 235 (390)
Q Consensus 159 R~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~- 235 (390)
|+.++++|.+.|.+ ++.++|+|+|+||+||||||..++++...+.+|+.++|+.++...+..+++..|+..++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78899999999988 789999999999999999999999997777889999999999999999999999999988743
Q ss_pred ---CCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhhhhhcCCCcceEecCCCCH
Q 042806 236 ---EESDSGRARSLRNRLKKEKTILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDVLSRKMDSQQNFSVGVLKE 312 (390)
Q Consensus 236 ---~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v~~~~~~~~~~~~l~~L~~ 312 (390)
..+.......+.+.|.+++ +||||||||+...|+.+...++....|++||+|||+..++.........|++++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~-~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKR-CLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTS-EEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhcccc-ceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2345567788888888875 999999999999998888888777789999999999888654333367999999999
Q ss_pred HHHHHHHHHhhCCCC--CCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCCCCCCcccchhHHHHHhhhh
Q 042806 313 DEAWSLFKKMAGDYI--EGSEFKWVAKDVARECAGLPVSIVTVARALGTRDYLNGRTHWNSWGGLLQLTL 380 (390)
Q Consensus 313 ~ea~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~~~~~~~~~~~w~~~~~~l~~~~ 380 (390)
++|++||.+.++... ..+..++.+++|+++|+|+||||.++|++|+.++. ..+|+++...+....
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~---~~~w~~~~~~l~~~~ 226 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKST---VDEWEEALEELENSL 226 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHS---SSSHHHHHHHHHHCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccc
Confidence 999999999997332 34555678899999999999999999999977664 789998887776655
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.96 E-value=4.3e-28 Score=261.71 Aligned_cols=218 Identities=20% Similarity=0.277 Sum_probs=166.3
Q ss_pred cccccchhHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe---CCC-----------
Q 042806 153 YEACESRMSTLNDILDALK--NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEV---SKI----------- 216 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v---~~~----------- 216 (390)
.+.++||+..++++..+|. .++.++|+|+||||+||||||+.+|+.... +|++.+|+.. +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhcccccccc
Confidence 4579999999999988875 356899999999999999999999998764 4998888742 110
Q ss_pred CC-HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhhh
Q 042806 217 QD-IRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDVL 295 (390)
Q Consensus 217 ~~-~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v~ 295 (390)
+. ...+...++..+....... ......+.+.+..++ +||||||||+...|+.+.......++||+||||||+..++
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~~~L~~kr-vLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl 337 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIK--IYHLGAMEERLKHRK-VLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFL 337 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcc--cCCHHHHHHHHhCCe-EEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHH
Confidence 00 1223344444432211110 011245667777655 9999999999989988876655557899999999999886
Q ss_pred hhcCCCcceEecCCCCHHHHHHHHHHhhCC-CCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCCCCCCcccchhHHH
Q 042806 296 SRKMDSQQNFSVGVLKEDEAWSLFKKMAGD-YIEGSEFKWVAKDVARECAGLPVSIVTVARALGTRDYLNGRTHWNSWGG 374 (390)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~~~~~~~~~~~w~~~~~ 374 (390)
. ..+..+.|+++.|+.++||+||+.+||. ..++.++.+++++|+++|+|+||||+++|++|+.++ ..+|+.+..
T Consensus 338 ~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~----~~~W~~~l~ 412 (1153)
T PLN03210 338 R-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRD----KEDWMDMLP 412 (1153)
T ss_pred H-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCC----HHHHHHHHH
Confidence 4 3445679999999999999999999984 334556788999999999999999999999999875 689999888
Q ss_pred HHhhhh
Q 042806 375 LLQLTL 380 (390)
Q Consensus 375 ~l~~~~ 380 (390)
.|+...
T Consensus 413 ~L~~~~ 418 (1153)
T PLN03210 413 RLRNGL 418 (1153)
T ss_pred HHHhCc
Confidence 887643
No 4
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.52 E-value=2.4e-12 Score=118.09 Aligned_cols=182 Identities=16% Similarity=0.166 Sum_probs=117.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHH---
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNR--- 249 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~--- 249 (390)
....++.|+|++|+|||||++.+++...... + ..+|+ +....+..+++..++..++......+.......+...
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999998875321 1 12333 3334577889999999998765443333333444433
Q ss_pred -HhCCCeEEEEEeCCCCCc--ccccccC---CCCCCCCCcEEEEEecchhhhh--------hcCCCcceEecCCCCHHHH
Q 042806 250 -LKKEKTILVILDNIWGNL--DFQAVGI---PHGDDRKGCKVLLTARSLDVLS--------RKMDSQQNFSVGVLKEDEA 315 (390)
Q Consensus 250 -l~~~~~~LlVlDdv~~~~--~~~~l~~---~l~~~~~~s~IivTtr~~~v~~--------~~~~~~~~~~l~~L~~~ea 315 (390)
...++++++|+||++... .++.+.. ....+.....|++|........ ........+++.+|+.+|.
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 334566999999998753 3444322 1111223345667765432100 0011134788999999999
Q ss_pred HHHHHHhhC--CCC-CCCchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042806 316 WSLFKKMAG--DYI-EGSEFKWVAKDVARECAGLPVSIVTVARAL 357 (390)
Q Consensus 316 ~~lf~~~~~--~~~-~~~~~~~~~~~i~~~~~GlPLai~~l~~~L 357 (390)
.+++.+.+. +.. ...-.++..+.|++.|+|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999988774 111 112235678999999999999999998776
No 5
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.48 E-value=2.6e-13 Score=121.39 Aligned_cols=194 Identities=15% Similarity=0.229 Sum_probs=105.9
Q ss_pred ccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHH---------
Q 042806 156 CESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEI--------- 226 (390)
Q Consensus 156 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i--------- 226 (390)
|+||+.++++|.+++..+..+.+.|+|+.|+|||+|++.+.+.....+ + ..+|+......+. .....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 789999999999999877788999999999999999999999884421 2 2344444333322 222221
Q ss_pred -HHHhCCCCC-----------CCCchHHHHHHHHHHhC-CCeEEEEEeCCCCCc-cc----------ccccCCCCCCCCC
Q 042806 227 -ADKLGLTLH-----------EESDSGRARSLRNRLKK-EKTILVILDNIWGNL-DF----------QAVGIPHGDDRKG 282 (390)
Q Consensus 227 -~~~l~~~~~-----------~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~-~~----------~~l~~~l~~~~~~ 282 (390)
...+....+ ..........+.+.+.. +++++||+||++... .. ..+..... ....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-ccCC
Confidence 111211100 11223344555555543 234999999997554 11 11111221 2334
Q ss_pred cEEEEEecchhhhhh-------cCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 283 CKVLLTARSLDVLSR-------KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 283 s~IivTtr~~~v~~~-------~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
..+|+++.+...... ..+....+.+++|+.+++++++...+.....-+.-++..++|+..+||+|..|..+
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhcC
Confidence 455566555444322 22333469999999999999999976433111122455789999999999998753
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.40 E-value=3.6e-11 Score=116.52 Aligned_cols=202 Identities=19% Similarity=0.165 Sum_probs=128.8
Q ss_pred cccccchhHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042806 153 YEACESRMSTLNDILDALK----NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
++.++||+.++++|...+. +.....+.|+|++|+|||++++.+++........-..+++++....+...++..++.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 4579999999999988873 234567889999999999999999998765432234677777777788899999999
Q ss_pred HhCCC-CCC--CCchHHHHHHHHHHhC-CCeEEEEEeCCCCCc------ccccccCCCCCCCC--CcEEEEEecchhhhh
Q 042806 229 KLGLT-LHE--ESDSGRARSLRNRLKK-EKTILVILDNIWGNL------DFQAVGIPHGDDRK--GCKVLLTARSLDVLS 296 (390)
Q Consensus 229 ~l~~~-~~~--~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~------~~~~l~~~l~~~~~--~s~IivTtr~~~v~~ 296 (390)
++... .+. .+.......+.+.+.. +++.+||||+++... .+..+...+ .... +..+|.++....+..
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~-~~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH-EEYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh-hccCCCeEEEEEEECCcchhh
Confidence 98652 211 1334455666676654 456899999997642 122222211 1112 233666666543221
Q ss_pred h------cCCCcceEecCCCCHHHHHHHHHHhhCC-----CCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042806 297 R------KMDSQQNFSVGVLKEDEAWSLFKKMAGD-----YIEGSEFKWVAKDVARECAGLPVSIVTVAR 355 (390)
Q Consensus 297 ~------~~~~~~~~~l~~L~~~ea~~lf~~~~~~-----~~~~~~~~~~~~~i~~~~~GlPLai~~l~~ 355 (390)
. ..-....+.+.+++.++..+++...+.. ...+..++.+++......|..+.|+..+-.
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~ 257 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRR 257 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1 1112357899999999999999887631 122222233333333334668888877754
No 7
>PF05729 NACHT: NACHT domain
Probab=99.39 E-value=4e-12 Score=107.50 Aligned_cols=143 Identities=22% Similarity=0.306 Sum_probs=92.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCeEEEEEeCCCCCHH---HHHHHHHHHhCCCCCCCCchHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKL----FDQVIFVEVSKIQDIR---KIQGEIADKLGLTLHEESDSGRARSLRN 248 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~---~l~~~i~~~l~~~~~~~~~~~~~~~l~~ 248 (390)
+++.|+|.+|+||||+++.++........ +...+|+..+...... .+...+.......... ....+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP-----IEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh-----hHHHHHH
Confidence 57899999999999999999998876543 3456677665543322 3444444444322111 1113334
Q ss_pred HHhCCCeEEEEEeCCCCCcc---------ccc-ccCCCCC-CCCCcEEEEEecchhh--hhhcCCCcceEecCCCCHHHH
Q 042806 249 RLKKEKTILVILDNIWGNLD---------FQA-VGIPHGD-DRKGCKVLLTARSLDV--LSRKMDSQQNFSVGVLKEDEA 315 (390)
Q Consensus 249 ~l~~~~~~LlVlDdv~~~~~---------~~~-l~~~l~~-~~~~s~IivTtr~~~v--~~~~~~~~~~~~l~~L~~~ea 315 (390)
.+...++++||||+++.... +.. +...++. ..+++++++|+|+... ..........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 44455669999999975432 111 2112222 3568999999998665 222344457899999999999
Q ss_pred HHHHHHhh
Q 042806 316 WSLFKKMA 323 (390)
Q Consensus 316 ~~lf~~~~ 323 (390)
.+++++.+
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998876
No 8
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.37 E-value=1.2e-11 Score=132.39 Aligned_cols=195 Identities=14% Similarity=0.149 Sum_probs=125.8
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhC
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK-IQDIRKIQGEIADKLG 231 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~l~~~i~~~l~ 231 (390)
...++.|..-.+.+-+ ....+++.|+||+|.||||++.++.... +.++|+++.. +.++..+...++..++
T Consensus 13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~------~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK------NNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC------CCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 4467888765555432 2357899999999999999999988532 2589999964 4466667777777764
Q ss_pred CCCCC--------------CCchHHHHHHHHHHhC-CCeEEEEEeCCCCCc--ccc-cccCCCCCCCCCcEEEEEecchh
Q 042806 232 LTLHE--------------ESDSGRARSLRNRLKK-EKTILVILDNIWGNL--DFQ-AVGIPHGDDRKGCKVLLTARSLD 293 (390)
Q Consensus 232 ~~~~~--------------~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~--~~~-~l~~~l~~~~~~s~IivTtr~~~ 293 (390)
..... .+.......+...+.. +++++|||||++..+ ... .+...+....++.++|+|||...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 21111 0111233344445543 667999999997542 222 22222333455678989999732
Q ss_pred hhh--hcCCCcceEecC----CCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCC
Q 042806 294 VLS--RKMDSQQNFSVG----VLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARALGTR 360 (390)
Q Consensus 294 v~~--~~~~~~~~~~l~----~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~~~ 360 (390)
... .........++. +|+.+|+.++|....+.... .+....|.+.|+|+|+++..++..+...
T Consensus 164 ~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 164 PLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred CCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 111 001112345555 99999999999887653321 3346789999999999999998777543
No 9
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.32 E-value=2.7e-10 Score=109.31 Aligned_cols=198 Identities=17% Similarity=0.185 Sum_probs=124.6
Q ss_pred ccccchhHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhhhcC-CC---CeEEEEEeCCCCCHHHHHHH
Q 042806 154 EACESRMSTLNDILDALKN----PDVNMLGIYGMGGIVKTTLAKEVARKAETEK-LF---DQVIFVEVSKIQDIRKIQGE 225 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~-~f---~~~~wv~v~~~~~~~~l~~~ 225 (390)
+.++||+.++++|...+.. .....+.|+|++|+|||++++.+++...... .. -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4689999999999998763 3456789999999999999999999864321 11 24677888777788899999
Q ss_pred HHHHhC---CCCCC--CCchHHHHHHHHHHh-CCCeEEEEEeCCCCCc-c----cccccCCC-CCCC--CCcEEEEEecc
Q 042806 226 IADKLG---LTLHE--ESDSGRARSLRNRLK-KEKTILVILDNIWGNL-D----FQAVGIPH-GDDR--KGCKVLLTARS 291 (390)
Q Consensus 226 i~~~l~---~~~~~--~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~~-~----~~~l~~~l-~~~~--~~s~IivTtr~ 291 (390)
++.++. ...+. .+.......+.+.+. .+++++||||+++... . +..+.... .... ....+|+++..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 999883 32221 123344555666664 3556899999997651 1 11221110 1111 23445555544
Q ss_pred hhhhhh----c--CCCcceEecCCCCHHHHHHHHHHhhC----CCCCCCchHHHHHHHHHHcCCChHHHH
Q 042806 292 LDVLSR----K--MDSQQNFSVGVLKEDEAWSLFKKMAG----DYIEGSEFKWVAKDVARECAGLPVSIV 351 (390)
Q Consensus 292 ~~v~~~----~--~~~~~~~~l~~L~~~ea~~lf~~~~~----~~~~~~~~~~~~~~i~~~~~GlPLai~ 351 (390)
...... . .-....+++.+++.++..+++..++. .....++..+.+..++..+.|.|-.+.
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al 244 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAI 244 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHH
Confidence 322111 0 11125789999999999999988863 111222222344556777778885443
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.15 E-value=2e-09 Score=100.62 Aligned_cols=188 Identities=15% Similarity=0.066 Sum_probs=107.9
Q ss_pred ccccchhHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042806 154 EACESRMSTLNDILDALK-----NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
..|+|++..++.|..++. ......+.++|++|+|||+||+.+++..... + ..+..+......++. ..+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l~-~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDLA-AILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhHH-HHHH
Confidence 479999999999888876 2345668899999999999999999987532 2 222222212222222 2222
Q ss_pred HhCCCC-------CCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhhhhhc-CC
Q 042806 229 KLGLTL-------HEESDSGRARSLRNRLKKEKTILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDVLSRK-MD 300 (390)
Q Consensus 229 ~l~~~~-------~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v~~~~-~~ 300 (390)
.++... ...+ ......+...+.+.+ ..+|+++..+...+.. .+ .+.+-|..||+...+.... ..
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~-~~~v~~~~~~~~~~~~---~~---~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFR-LDIVIGKGPSARSVRL---DL---PPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhhhh-eeeeeccCccccceee---cC---CCeEEEEecCCccccCHHHHhh
Confidence 222111 0001 112223334443333 4555555433333221 11 2245566666654332211 11
Q ss_pred CcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHH
Q 042806 301 SQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARA 356 (390)
Q Consensus 301 ~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~ 356 (390)
....+++.+++.++..+++.+.+...... -.++....|++.|+|.|-.+..+...
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~~-~~~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNVE-IEPEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCCC-cCHHHHHHHHHHhCCCcchHHHHHHH
Confidence 23578999999999999999887522222 22456789999999999877666544
No 11
>PRK06893 DNA replication initiation factor; Validated
Probab=99.09 E-value=1.8e-09 Score=96.38 Aligned_cols=155 Identities=16% Similarity=0.147 Sum_probs=96.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKE 253 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (390)
..+.+.|+|++|+|||+|++.+++....+ .....|+.+... ..... .+.+.+.+
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~---~~~~~--------------------~~~~~~~~- 91 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKS---QYFSP--------------------AVLENLEQ- 91 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHh---hhhhH--------------------HHHhhccc-
Confidence 34678999999999999999999987543 234567665321 00000 11222222
Q ss_pred CeEEEEEeCCCCC---ccccc-ccCCCCC-CCCCcEEEE-Eecc---------hhhhhhcCCCcceEecCCCCHHHHHHH
Q 042806 254 KTILVILDNIWGN---LDFQA-VGIPHGD-DRKGCKVLL-TARS---------LDVLSRKMDSQQNFSVGVLKEDEAWSL 318 (390)
Q Consensus 254 ~~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~~s~Iiv-Ttr~---------~~v~~~~~~~~~~~~l~~L~~~ea~~l 318 (390)
.-+|++||+|.. ..|+. +...+.. ...|..+|+ |+.. ..+.+ ....+..+++++++.++.+++
T Consensus 92 -~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 92 -QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred -CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCHHHHHHH
Confidence 249999999864 34442 2222221 123555554 4443 23322 234557899999999999999
Q ss_pred HHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042806 319 FKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARAL 357 (390)
Q Consensus 319 f~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L 357 (390)
+++.+....... -+++...|++.+.|-.-.+..+-..|
T Consensus 170 L~~~a~~~~l~l-~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 170 LQRNAYQRGIEL-SDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHcCCCC-CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 998886332222 25678899999998877766655444
No 12
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.07 E-value=7.2e-09 Score=97.77 Aligned_cols=191 Identities=13% Similarity=0.014 Sum_probs=104.1
Q ss_pred CcccccchhHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 042806 152 DYEACESRMSTLNDILDALK-----NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEI 226 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i 226 (390)
....|+||+..++.+...+. ....+.+.|+|++|+|||+||+.+++..... + .++..+..... .-+..+
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~~~~~-~~l~~~ 96 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPALEKP-GDLAAI 96 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEecccccCh-HHHHHH
Confidence 45679999999988877664 2335678899999999999999999987532 2 22222211111 112222
Q ss_pred HHHhCCCC----CCCC--chHHHHHHHHHHhCCCeEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhhhhhc-C
Q 042806 227 ADKLGLTL----HEES--DSGRARSLRNRLKKEKTILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDVLSRK-M 299 (390)
Q Consensus 227 ~~~l~~~~----~~~~--~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v~~~~-~ 299 (390)
+..+.... ++.+ .....+.+...+.+.+ ..+|+|+-.+...+.. .+ .+.+-|..|++...+.... .
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~-~~~~l~~~~~~~~~~~---~l---~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFR-LDIMIGKGPAARSIRL---DL---PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcc-eeeeeccCccccceee---cC---CCceEEeecCCcccCCHHHHH
Confidence 22221110 0000 0001112222222222 3344443322211110 11 1234455666644332211 1
Q ss_pred CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHH
Q 042806 300 DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARA 356 (390)
Q Consensus 300 ~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~ 356 (390)
.....+++.+++.++..+++...+...... -.++....|++.|+|.|-.+..+...
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~~ 225 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLRR 225 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHHH
Confidence 123578999999999999999887632222 22457889999999999866666553
No 13
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.06 E-value=2.9e-09 Score=103.49 Aligned_cols=180 Identities=18% Similarity=0.164 Sum_probs=107.6
Q ss_pred CcccccchhHHHHH---HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042806 152 DYEACESRMSTLND---ILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 152 ~~~~~~gR~~~~~~---l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
..+.++|++..+.. +..++..+..+.+.|+|++|+||||||+.+++..... | +.++.......-++.+..
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~--~-----~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP--F-----EALSAVTSGVKDLREVIE 82 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E-----EEEecccccHHHHHHHHH
Confidence 34568888877655 7777777777788899999999999999999876422 2 222221111111112211
Q ss_pred HhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc--ccccccCCCCCCCCCcEEEE--Eecchh--hhhhcCCCc
Q 042806 229 KLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL--DFQAVGIPHGDDRKGCKVLL--TARSLD--VLSRKMDSQ 302 (390)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~Iiv--Ttr~~~--v~~~~~~~~ 302 (390)
........+++.+|++|+++... ..+.+...+ ..+..+++ ||.+.. +......-.
T Consensus 83 ----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l---e~~~iilI~att~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 83 ----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV---EDGTITLIGATTENPSFEVNPALLSRA 143 (413)
T ss_pred ----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHh---hcCcEEEEEeCCCChhhhccHHHhccc
Confidence 11111122344899999998652 333343333 22444444 344322 111122233
Q ss_pred ceEecCCCCHHHHHHHHHHhhCC--CCCCCchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042806 303 QNFSVGVLKEDEAWSLFKKMAGD--YIEGSEFKWVAKDVARECAGLPVSIVTVARAL 357 (390)
Q Consensus 303 ~~~~l~~L~~~ea~~lf~~~~~~--~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L 357 (390)
..+++.+++.++...++.+.+.. .....-.++....|++.|+|.|..+..+....
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 68999999999999999987642 11102235567889999999998776554443
No 14
>PF13173 AAA_14: AAA domain
Probab=99.03 E-value=8e-10 Score=89.39 Aligned_cols=121 Identities=20% Similarity=0.197 Sum_probs=81.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEK 254 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 254 (390)
.+++.|.|+.|+|||||+++++.+.. ....++|+++...........+ ....+.+....++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELIKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhhccCC
Confidence 46899999999999999999998875 1345677776654321110000 1222333322334
Q ss_pred eEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhhhhh-----cCCCcceEecCCCCHHHH
Q 042806 255 TILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDVLSR-----KMDSQQNFSVGVLKEDEA 315 (390)
Q Consensus 255 ~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v~~~-----~~~~~~~~~l~~L~~~ea 315 (390)
.+++||+++...+|......+.+..+..+|++|+.+...... ..+-...+++.||+..|.
T Consensus 63 -~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 -KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred -cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 899999999988888876666565567899999998655422 222335789999998774
No 15
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.00 E-value=1.3e-08 Score=102.30 Aligned_cols=204 Identities=16% Similarity=0.127 Sum_probs=134.3
Q ss_pred cccccCcccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CCCHHHHHHH
Q 042806 147 LLSIKDYEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK-IQDIRKIQGE 225 (390)
Q Consensus 147 ~~~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~l~~~ 225 (390)
..+|.+....+-|..-.+.|-+ ..+.+++.|..|+|.|||||+.++...... =..+.|++++. +.++..++..
T Consensus 12 ~~~P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 12 LVRPVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred cCCCCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHH
Confidence 3445556677888655544433 247899999999999999999999873322 33589999975 4578888888
Q ss_pred HHHHhCCCCCCCC--------------chHHHHHHHHHHhC-CCeEEEEEeCCCCC--ccccc-ccCCCCCCCCCcEEEE
Q 042806 226 IADKLGLTLHEES--------------DSGRARSLRNRLKK-EKTILVILDNIWGN--LDFQA-VGIPHGDDRKGCKVLL 287 (390)
Q Consensus 226 i~~~l~~~~~~~~--------------~~~~~~~l~~~l~~-~~~~LlVlDdv~~~--~~~~~-l~~~l~~~~~~s~Iiv 287 (390)
++..++...+... .......+...+.+ .+|+++||||.+-. ..+.. +...+....++...|+
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 8888874433221 11233344444432 45699999998633 22322 2223334566889999
Q ss_pred Eecchhhhhh--cCCCcceEecC----CCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCC
Q 042806 288 TARSLDVLSR--KMDSQQNFSVG----VLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARALGTR 360 (390)
Q Consensus 288 Ttr~~~v~~~--~~~~~~~~~l~----~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~~~ 360 (390)
|||+.--... ..-....++++ .|+.+|+.++|....+...+ +...+.+.+..+|.+-|+..++-.++++
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALRNN 240 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence 9997432110 11112244443 58999999999887743332 2346789999999999999999888833
No 16
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.00 E-value=1.2e-08 Score=96.74 Aligned_cols=201 Identities=14% Similarity=0.102 Sum_probs=112.8
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC-eEEEEEeCCCCCH--HHHHH--HHH
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFD-QVIFVEVSKIQDI--RKIQG--EIA 227 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~--~~l~~--~i~ 227 (390)
...++|++..++.+..++..+..+.+.++|++|+||||+|+.+.+..... .+. ..++++++..... ..+.. ...
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCcchh
Confidence 45788999999999999888776778899999999999999999886432 122 2344444321100 00000 000
Q ss_pred HHhCCC-CCCCCchHHHHHHHHHHhC-----CCeEEEEEeCCCCCc--ccccccCCCCCCCCCcEEEEEecchh-hhhhc
Q 042806 228 DKLGLT-LHEESDSGRARSLRNRLKK-----EKTILVILDNIWGNL--DFQAVGIPHGDDRKGCKVLLTARSLD-VLSRK 298 (390)
Q Consensus 228 ~~l~~~-~~~~~~~~~~~~l~~~l~~-----~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~IivTtr~~~-v~~~~ 298 (390)
..++.. ............+.+.... ..+-+||+||++... ....+...+......+++|+|+.... +....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L 172 (337)
T PRK12402 93 HFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPI 172 (337)
T ss_pred hhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhh
Confidence 000000 0000111122222222211 222589999997552 22233322222234567877775432 21212
Q ss_pred CCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042806 299 MDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVAR 355 (390)
Q Consensus 299 ~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~ 355 (390)
......+++.+++.++...++.+.+......- ..+....+++.++|.+-.+.....
T Consensus 173 ~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~al~~l~~~~~gdlr~l~~~l~ 228 (337)
T PRK12402 173 RSRCLPLFFRAPTDDELVDVLESIAEAEGVDY-DDDGLELIAYYAGGDLRKAILTLQ 228 (337)
T ss_pred cCCceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22345888999999999999988764222111 245678899999887766655443
No 17
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.97 E-value=9e-09 Score=91.81 Aligned_cols=170 Identities=16% Similarity=0.151 Sum_probs=104.1
Q ss_pred hhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC
Q 042806 159 RMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEES 238 (390)
Q Consensus 159 R~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~ 238 (390)
....++.+.+++.......+.|+|++|+|||+||+.+++..... ....+|++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~------~~------------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ------AD------------ 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH------hH------------
Confidence 44566777777655667789999999999999999999887543 33455665543211 00
Q ss_pred chHHHHHHHHHHhCCCeEEEEEeCCCCCc---ccc-cccCCCCC-CCCCcEEEEEecchhhh--------hhcCCCcceE
Q 042806 239 DSGRARSLRNRLKKEKTILVILDNIWGNL---DFQ-AVGIPHGD-DRKGCKVLLTARSLDVL--------SRKMDSQQNF 305 (390)
Q Consensus 239 ~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---~~~-~l~~~l~~-~~~~s~IivTtr~~~v~--------~~~~~~~~~~ 305 (390)
..+.+.+.. . -+||+||++... .|. .+...+.. ...+..+|+||+..... .........+
T Consensus 82 -----~~~~~~~~~-~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i 154 (226)
T TIGR03420 82 -----PEVLEGLEQ-A-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred -----HHHHhhccc-C-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeE
Confidence 011122222 2 489999997553 222 23222211 12234788888743210 1112234689
Q ss_pred ecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHH
Q 042806 306 SVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARA 356 (390)
Q Consensus 306 ~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~ 356 (390)
++.+++.++...++++.+...... -.++..+.+.+.++|.|..+..+...
T Consensus 155 ~l~~l~~~e~~~~l~~~~~~~~~~-~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRAARRGLQ-LPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 999999999999998765321111 12456788888999999988777443
No 18
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=4.3e-08 Score=93.65 Aligned_cols=179 Identities=13% Similarity=0.192 Sum_probs=109.7
Q ss_pred cccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC-------------------eEEEEE
Q 042806 153 YEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKLFD-------------------QVIFVE 212 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~-------------------~~~wv~ 212 (390)
...++|.+..++.+...+..++. ..+.++|+.|+||||+|+.+.+.......+. ...++.
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~ 94 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEID 94 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEec
Confidence 45789999999999998887654 5678999999999999999998864221110 111111
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCCc--ccccccCCCCCCCCCcEEE
Q 042806 213 VSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGNL--DFQAVGIPHGDDRKGCKVL 286 (390)
Q Consensus 213 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~Ii 286 (390)
.+..... .....+.+.+. .++.-++|+|+++... .++.+...+.......++|
T Consensus 95 ~~~~~~v---------------------~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fI 153 (363)
T PRK14961 95 AASRTKV---------------------EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFI 153 (363)
T ss_pred ccccCCH---------------------HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 1111111 11222222221 1233599999998653 3555544444444566677
Q ss_pred EEecc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 287 LTARS-LDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 287 vTtr~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
++|.+ ..+.....+-...+++.+++.++..+.+.+.+....... .++.+..|++.++|.|-.+..+
T Consensus 154 l~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i-~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 154 LATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT-DEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred EEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 76654 333222223346899999999999999888764221111 2346778999999988644443
No 19
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.94 E-value=1e-08 Score=95.02 Aligned_cols=176 Identities=16% Similarity=0.155 Sum_probs=104.7
Q ss_pred CcccccchhHHH---HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC-HHHHHHHHH
Q 042806 152 DYEACESRMSTL---NDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQD-IRKIQGEIA 227 (390)
Q Consensus 152 ~~~~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~l~~~i~ 227 (390)
..+.++|.+..+ .-|-.++..+++.-..+|||+|+||||||+.+....... | ..+|...+ ..++ +.+
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdl-r~i- 92 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDL-REI- 92 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHH-HHH-
Confidence 345566655443 234455556777777799999999999999999876532 3 33343322 2222 111
Q ss_pred HHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc-ccccccCCCCCCCCCcEEEE--Eecchhhh--hhcCCCc
Q 042806 228 DKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL-DFQAVGIPHGDDRKGCKVLL--TARSLDVL--SRKMDSQ 302 (390)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~-~~~~l~~~l~~~~~~s~Iiv--Ttr~~~v~--~~~~~~~ 302 (390)
++.-.+....+++.+|.+|.|+... .-++.. +|.-.+|.-|+| ||.+.... ....+-.
T Consensus 93 ---------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l--Lp~vE~G~iilIGATTENPsF~ln~ALlSR~ 155 (436)
T COG2256 93 ---------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDAL--LPHVENGTIILIGATTENPSFELNPALLSRA 155 (436)
T ss_pred ---------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhh--hhhhcCCeEEEEeccCCCCCeeecHHHhhhh
Confidence 1222233334667999999997542 222332 333556766665 55554321 2233455
Q ss_pred ceEecCCCCHHHHHHHHHHhhC------CCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 303 QNFSVGVLKEDEAWSLFKKMAG------DYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 303 ~~~~l~~L~~~ea~~lf~~~~~------~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
.++.+++|+.++..+++.+.+. +.....-.++....++..++|---+.-..
T Consensus 156 ~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~ 212 (436)
T COG2256 156 RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNL 212 (436)
T ss_pred heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHH
Confidence 7999999999999999988442 11111122456778899988866544333
No 20
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.93 E-value=3.3e-09 Score=85.95 Aligned_cols=116 Identities=26% Similarity=0.322 Sum_probs=82.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc---CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CCchHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETE---KLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHE-ESDSGRARSLRNR 249 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~---~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 249 (390)
+.+.+.|+|++|+|||++++.+.+..... ..-..++|+.++...+...+...++..++..... .+.......+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34678999999999999999999987431 0123467999988889999999999999987766 4556667788888
Q ss_pred HhCCCeEEEEEeCCCCC---cccccccCCCCCCCCCcEEEEEecc
Q 042806 250 LKKEKTILVILDNIWGN---LDFQAVGIPHGDDRKGCKVLLTARS 291 (390)
Q Consensus 250 l~~~~~~LlVlDdv~~~---~~~~~l~~~l~~~~~~s~IivTtr~ 291 (390)
+...+..+||+|+++.. ..++.+.... +..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~--~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLL--NESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHT--CSCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHH--hCCCCeEEEEECh
Confidence 88777579999999754 2233333222 2667788888775
No 21
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.93 E-value=3.5e-08 Score=99.37 Aligned_cols=183 Identities=14% Similarity=0.157 Sum_probs=114.9
Q ss_pred cCcccccchhHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCC-------------------CCeEEE
Q 042806 151 KDYEACESRMSTLNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETEKL-------------------FDQVIF 210 (390)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~-------------------f~~~~w 210 (390)
....+++|.+..++.|.+++..++ ...+.++|+.|+||||+++.+.+....... |...++
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 335678999999999999998776 456789999999999999999887642211 111222
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCCc--ccccccCCCCCCCCCcE
Q 042806 211 VEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGNL--DFQAVGIPHGDDRKGCK 284 (390)
Q Consensus 211 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ 284 (390)
++.+....+++ +..+.+.+. .++.-++|||+++... .++.+...+-.-..+.+
T Consensus 93 IDAas~rgVDd---------------------IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 93 MDAASNRGVDE---------------------MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred ecccccccHHH---------------------HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 22221111111 112222211 2333588999998663 46666555534445677
Q ss_pred EEEEecch-hhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCh-HHHHHHHH
Q 042806 285 VLLTARSL-DVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLP-VSIVTVAR 355 (390)
Q Consensus 285 IivTtr~~-~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP-Lai~~l~~ 355 (390)
+|+||.+. .+......-...+++++++.++..+.+.+.+....... .++....|++.++|.. -++..+-.
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i-d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF-EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78777763 33222233346899999999999999998875322222 2456778999998855 56665443
No 22
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.90 E-value=4.1e-07 Score=92.43 Aligned_cols=202 Identities=16% Similarity=0.089 Sum_probs=120.0
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCC---CeEEEEEeCCC---CCHHHHHHHH
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLF---DQVIFVEVSKI---QDIRKIQGEI 226 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f---~~~~wv~v~~~---~~~~~l~~~i 226 (390)
.+.++|+...+..+.+.+..+....+.|+|++|+||||||+.+++.......+ ....|+.+... .+...+...+
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 45688999888888888876667789999999999999999998876443322 12345544321 1222221111
Q ss_pred ---------------HHHhCCC------------------CCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--ccccc
Q 042806 227 ---------------ADKLGLT------------------LHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQA 271 (390)
Q Consensus 227 ---------------~~~l~~~------------------~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~ 271 (390)
+...+.. ....-+......+...+..++ +.++-|+.|.. ..|+.
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~-v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKR-VEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCe-EEeecceeccCCcccchh
Confidence 1111110 000112234556777777755 77777666543 45777
Q ss_pred ccCCCCCCCCCcEEEE--Eecchhh-hhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChH
Q 042806 272 VGIPHGDDRKGCKVLL--TARSLDV-LSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPV 348 (390)
Q Consensus 272 l~~~l~~~~~~s~Iiv--Ttr~~~v-~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPL 348 (390)
+...+....+...+++ ||++... ......-...+.+.+++.++.+.++.+.+......- .+++.+.|.+.+..-+-
T Consensus 312 ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l-s~eal~~L~~ys~~gRr 390 (615)
T TIGR02903 312 IKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL-AAGVEELIARYTIEGRK 390 (615)
T ss_pred hhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHCCCcHHH
Confidence 7666655555544554 4554321 111112234778999999999999999875221111 14456667776666677
Q ss_pred HHHHHHHH
Q 042806 349 SIVTVARA 356 (390)
Q Consensus 349 ai~~l~~~ 356 (390)
++..++.+
T Consensus 391 aln~L~~~ 398 (615)
T TIGR02903 391 AVNILADV 398 (615)
T ss_pred HHHHHHHH
Confidence 88777544
No 23
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.89 E-value=8.5e-08 Score=90.15 Aligned_cols=186 Identities=14% Similarity=0.086 Sum_probs=110.1
Q ss_pred CcccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe--CCCCCHHHHHHHHHHH
Q 042806 152 DYEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEV--SKIQDIRKIQGEIADK 229 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v--~~~~~~~~l~~~i~~~ 229 (390)
....++|++..++.+..++..+..+.+.++|++|+||||+++.+.+...... +. ..++.+ +...... .....+..
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~-~~~i~~~~~~~~~~~-~~~~~i~~ 91 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WR-ENFLELNASDERGID-VIRNKIKE 91 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cc-cceEEeccccccchH-HHHHHHHH
Confidence 3456889999999999999877777789999999999999999999864332 22 122222 2222211 11121111
Q ss_pred hCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc--ccccccCCCCCCCCCcEEEEEecch-hhhhhcCCCcceEe
Q 042806 230 LGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL--DFQAVGIPHGDDRKGCKVLLTARSL-DVLSRKMDSQQNFS 306 (390)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~IivTtr~~-~v~~~~~~~~~~~~ 306 (390)
+....+ .....+-++++|+++... ....+...+....+.+.+|+++... .+..........++
T Consensus 92 ~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 92 FARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred HHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheee
Confidence 111000 001123689999986542 2233333333333456777776432 11111112234789
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042806 307 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVAR 355 (390)
Q Consensus 307 l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~ 355 (390)
+.+++.++...++.+.+......- .++....+++.++|.+--+...-.
T Consensus 158 ~~~l~~~ei~~~l~~~~~~~~~~i-~~~al~~l~~~~~gd~r~~~~~l~ 205 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAENEGIEI-TDDALEAIYYVSEGDMRKAINALQ 205 (319)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999988775222211 244678899999998877544433
No 24
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=7.5e-08 Score=90.24 Aligned_cols=177 Identities=19% Similarity=0.175 Sum_probs=114.8
Q ss_pred ccccchhHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhh----hcCCCCeEEEEEe-CCCCCHHHHHHHHH
Q 042806 154 EACESRMSTLNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAE----TEKLFDQVIFVEV-SKIQDIRKIQGEIA 227 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~----~~~~f~~~~wv~v-~~~~~~~~l~~~i~ 227 (390)
..++|.+..++.+..++..++ .+.+.++|+.|+||||+|+.++...- ...|+|...|... +.....++ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 356788888888999988765 46778999999999999999998752 2346676555442 23333434 23333
Q ss_pred HHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCC--CCcccccccCCCCCCCCCcEEEEEecchhh-hhhcCCCcce
Q 042806 228 DKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIW--GNLDFQAVGIPHGDDRKGCKVLLTARSLDV-LSRKMDSQQN 304 (390)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~s~IivTtr~~~v-~~~~~~~~~~ 304 (390)
..+...+- .+++ -++|+|+++ +...++.+...+..-.+++.+|++|.+.+. ......-...
T Consensus 83 ~~~~~~p~---------------~~~~-kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKKPY---------------EGDK-KVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcCcc---------------cCCc-eEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 33322111 1233 477777765 335677777777666678888888876432 2222333469
Q ss_pred EecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHH
Q 042806 305 FSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVT 352 (390)
Q Consensus 305 ~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~ 352 (390)
+++.+++.++....+.+.... . .++.+..++..++|.|..+..
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~-~----~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYND-I----KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcC-C----CHHHHHHHHHHcCCCHHHHHH
Confidence 999999999998888765521 1 123466889999998875543
No 25
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=4.3e-08 Score=100.54 Aligned_cols=184 Identities=16% Similarity=0.179 Sum_probs=111.6
Q ss_pred CcccccchhHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCC-------------------eEEEE
Q 042806 152 DYEACESRMSTLNDILDALKNPDVN-MLGIYGMGGIVKTTLAKEVARKAETEKLFD-------------------QVIFV 211 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~-------------------~~~wv 211 (390)
....++|.+..+..|.+++..++.. .+.++|+.|+||||+|+.+++......... .++++
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 3567899999999999988877654 568999999999999999998874321111 11222
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEe
Q 042806 212 EVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTA 289 (390)
Q Consensus 212 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTt 289 (390)
.......+.+ ++++...+. ..-..++.-++|||+++.. ..++.|...+-.-...+++|++|
T Consensus 94 dAas~~kVDd-IReLie~v~----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaT 156 (944)
T PRK14949 94 DAASRTKVDD-TRELLDNVQ----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLAT 156 (944)
T ss_pred ccccccCHHH-HHHHHHHHH----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEEC
Confidence 1111111111 122222111 0001234469999999755 44555544443333456666555
Q ss_pred cc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 290 RS-LDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 290 r~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
.+ ..+......-...|++++|+.++..+++.+.+..... .-.++....|++.++|.|--+..+
T Consensus 157 Te~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI-~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 157 TDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL-PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 44 4443222333469999999999999999887742211 122456788999999988655444
No 26
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.86 E-value=9.8e-08 Score=96.93 Aligned_cols=207 Identities=16% Similarity=0.147 Sum_probs=124.5
Q ss_pred cccccchhHHHHHHHHHhcC----C-CccEEEEEcCCCCcHHHHHHHHHHHhhhc---CCCC--eEEEEEeCCCCCHHHH
Q 042806 153 YEACESRMSTLNDILDALKN----P-DVNMLGIYGMGGIVKTTLAKEVARKAETE---KLFD--QVIFVEVSKIQDIRKI 222 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~----~-~~~vi~I~G~~GvGKTtLa~~v~~~~~~~---~~f~--~~~wv~v~~~~~~~~l 222 (390)
++.+.+|+.++++|...|.. . ...++.|+|++|.|||++++.|...+... .... ..++|++....+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 45688999999999887753 2 23567899999999999999999876432 1122 3567777777788899
Q ss_pred HHHHHHHhCCCCCCC--CchHHHHHHHHHHhC--CCeEEEEEeCCCCCcc--cccccCCCC-CCCCCcEEEE--Eecchh
Q 042806 223 QGEIADKLGLTLHEE--SDSGRARSLRNRLKK--EKTILVILDNIWGNLD--FQAVGIPHG-DDRKGCKVLL--TARSLD 293 (390)
Q Consensus 223 ~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~--~~~~LlVlDdv~~~~~--~~~l~~~l~-~~~~~s~Iiv--Ttr~~~ 293 (390)
+..|+.++....+.. +.......+...+.. +...+||||+++.... -+.|...+. ....+++|++ ++....
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 999998884433321 223344555555422 2336999999975421 111111110 1123444433 343221
Q ss_pred hh----hhc--CCCcceEecCCCCHHHHHHHHHHhhCC---CCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcC
Q 042806 294 VL----SRK--MDSQQNFSVGVLKEDEAWSLFKKMAGD---YIEGSEFKWVAKDVARECAGLPVSIVTVARALGT 359 (390)
Q Consensus 294 v~----~~~--~~~~~~~~l~~L~~~ea~~lf~~~~~~---~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~~ 359 (390)
.. ... .-....+...|++.++..+++..++.. ...+..++-+++.++...|-.-.||..+-.+...
T Consensus 914 LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 914 LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhh
Confidence 11 111 111234778999999999999998852 1222333344444445556677788777666554
No 27
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=5.6e-08 Score=96.64 Aligned_cols=181 Identities=13% Similarity=0.168 Sum_probs=112.8
Q ss_pred cCcccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcC------------------------CC
Q 042806 151 KDYEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEK------------------------LF 205 (390)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~------------------------~f 205 (390)
....+++|.+..+..|.+++..++. ..+.++|+.|+||||+|+.+.+.....+ .|
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCC
Confidence 3356789999999999999988764 4678999999999999999998764310 00
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCC
Q 042806 206 DQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDD 279 (390)
Q Consensus 206 ~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~ 279 (390)
...++++......+ +.+..+.+.+. .++.-++|||+++.. ..++.|...+-.-
T Consensus 93 pDviEIdAas~~gV---------------------DdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP 151 (700)
T PRK12323 93 VDYIEMDAASNRGV---------------------DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP 151 (700)
T ss_pred CcceEecccccCCH---------------------HHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC
Confidence 01112211111111 11222222221 234469999999855 4455555555333
Q ss_pred CCCcEEEEEecc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 280 RKGCKVLLTARS-LDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 280 ~~~s~IivTtr~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
..++++|++|.+ ..+.....+-...+++++++.++..+.+.+.+.......+ ++..+.|++.++|.|.-...+
T Consensus 152 P~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d-~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 152 PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE-VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 445665555554 4443333333469999999999999998887752222222 345678999999999755544
No 28
>PLN03025 replication factor C subunit; Provisional
Probab=98.85 E-value=8.4e-08 Score=90.14 Aligned_cols=186 Identities=12% Similarity=0.026 Sum_probs=108.8
Q ss_pred CcccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC-eEEEEEeCCCCCHHHHHHHHHHHh
Q 042806 152 DYEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFD-QVIFVEVSKIQDIRKIQGEIADKL 230 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~l~~~i~~~l 230 (390)
....++|.+..+..|..++..++.+-+.++|++|+||||+|+.+++..... .|. ..+-++.+...... .++.+.+.+
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~-~vr~~i~~~ 88 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGID-VVRNKIKMF 88 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHH-HHHHHHHHH
Confidence 345788888888888888877777778899999999999999999986432 132 22222333222222 222222222
Q ss_pred CCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc--ccccccCCCCCCCCCcEEEEEecch-hhhhhcCCCcceEec
Q 042806 231 GLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL--DFQAVGIPHGDDRKGCKVLLTARSL-DVLSRKMDSQQNFSV 307 (390)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~IivTtr~~-~v~~~~~~~~~~~~l 307 (390)
...... +..++.-++++|+++... ....+...+......+++|+++... .+......-...+++
T Consensus 89 ~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f 155 (319)
T PLN03025 89 AQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRF 155 (319)
T ss_pred Hhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccC
Confidence 110000 011234699999997652 2222322222223456677766542 221111122358999
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 308 GVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 308 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
.+++.++....+...+......-+ ++....|++.++|-.-.+...
T Consensus 156 ~~l~~~~l~~~L~~i~~~egi~i~-~~~l~~i~~~~~gDlR~aln~ 200 (319)
T PLN03025 156 SRLSDQEILGRLMKVVEAEKVPYV-PEGLEAIIFTADGDMRQALNN 200 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999888752222222 346788999998877554433
No 29
>PTZ00202 tuzin; Provisional
Probab=98.84 E-value=4.5e-07 Score=85.85 Aligned_cols=165 Identities=16% Similarity=0.213 Sum_probs=106.7
Q ss_pred cccCcccccchhHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 042806 149 SIKDYEACESRMSTLNDILDALKN---PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGE 225 (390)
Q Consensus 149 ~~~~~~~~~gR~~~~~~l~~~L~~---~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~ 225 (390)
.|.+...|+||+.++..|...|.+ +.++++.|.|++|+|||||++.+..... + ...+++. . +..++++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNp-r--g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDV-R--GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECC-C--CHHHHHHH
Confidence 455567899999999999988864 2356899999999999999999986653 1 1222222 2 67999999
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHh----C-CCeEEEEEeCCCCCccccccc---CCCCCCCCCcEEEEEecchhhhh-
Q 042806 226 IADKLGLTLHEESDSGRARSLRNRLK----K-EKTILVILDNIWGNLDFQAVG---IPHGDDRKGCKVLLTARSLDVLS- 296 (390)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~----~-~~~~LlVlDdv~~~~~~~~l~---~~l~~~~~~s~IivTtr~~~v~~- 296 (390)
++..||.... .....+...|.+.+. . +++.+||+- +.+-..+..+. ..+.....-|.|++----+++-.
T Consensus 329 LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 329 VVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchh
Confidence 9999997433 333455555555542 2 454666653 22222222211 12333445677877665544321
Q ss_pred -hcCCCcceEecCCCCHHHHHHHHHHhh
Q 042806 297 -RKMDSQQNFSVGVLKEDEAWSLFKKMA 323 (390)
Q Consensus 297 -~~~~~~~~~~l~~L~~~ea~~lf~~~~ 323 (390)
...+--..|-+.+|+.++|..+-++..
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhcc
Confidence 123344688899999999988877765
No 30
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=7.4e-08 Score=95.98 Aligned_cols=181 Identities=13% Similarity=0.149 Sum_probs=112.2
Q ss_pred cCcccccchhHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCC-------------------CeEEE
Q 042806 151 KDYEACESRMSTLNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETEKLF-------------------DQVIF 210 (390)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f-------------------~~~~w 210 (390)
.....++|.+.....|..++..++ ...+.++|+.|+||||+|+.+++........ -..+.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 335678999999999999998776 4577899999999999999998876421111 11122
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcE
Q 042806 211 VEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCK 284 (390)
Q Consensus 211 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ 284 (390)
+..+...... .+..+...+. .++.-++|+|+++.. ...+.+...+-.-..+.+
T Consensus 92 IDAAs~~~Vd---------------------dIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~ 150 (702)
T PRK14960 92 IDAASRTKVE---------------------DTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVK 150 (702)
T ss_pred ecccccCCHH---------------------HHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcE
Confidence 2221111111 1222222211 133368999999865 344445444433345567
Q ss_pred EEEEecc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 285 VLLTARS-LDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 285 IivTtr~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
+|++|.+ ..+......-...+++++++.++..+.+.+.+.......+ .+....|++.++|.+-.+..+
T Consensus 151 FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id-~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 151 FLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD-QDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred EEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 7777765 3332222344469999999999999999888753222222 345778999999988555444
No 31
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=6.1e-07 Score=85.14 Aligned_cols=202 Identities=20% Similarity=0.240 Sum_probs=131.4
Q ss_pred cccchhHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042806 155 ACESRMSTLNDILDALK----NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL 230 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l 230 (390)
.+.+|+.+++++...|. +..+.-+.|+|++|+|||+.++.+.........=...++|++....+..+++..|++.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 48899999999987765 33445599999999999999999999987642222289999999999999999999999
Q ss_pred CCC-CCCCCchHHHHHHHHHHhC-CCeEEEEEeCCCCCccc--ccccCCCCC-CCCCcE--EEEEecchhhhhh------
Q 042806 231 GLT-LHEESDSGRARSLRNRLKK-EKTILVILDNIWGNLDF--QAVGIPHGD-DRKGCK--VLLTARSLDVLSR------ 297 (390)
Q Consensus 231 ~~~-~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~~--~~l~~~l~~-~~~~s~--IivTtr~~~v~~~------ 297 (390)
+.. ....+.......+.+.+.. ++.+++|||++.....- +.+...+.. ..+.++ +|..+.+......
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~ 177 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVK 177 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhh
Confidence 633 2234566677777777754 55689999999754222 122111111 112343 3333433322111
Q ss_pred cCCCcceEecCCCCHHHHHHHHHHhhC-----CCCCCCchHHHHHHHHHHcCCChHHHHHHHHH
Q 042806 298 KMDSQQNFSVGVLKEDEAWSLFKKMAG-----DYIEGSEFKWVAKDVARECAGLPVSIVTVARA 356 (390)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~lf~~~~~-----~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~ 356 (390)
..-....+...|-+.+|-.+++..++. +...+.-++-++...++..|-.-.||..+-..
T Consensus 178 s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A 241 (366)
T COG1474 178 SSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRA 241 (366)
T ss_pred hccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 111223588999999999999988874 22333344444545555555666777766433
No 32
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=2e-07 Score=92.22 Aligned_cols=203 Identities=16% Similarity=0.105 Sum_probs=114.4
Q ss_pred CcccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042806 152 DYEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL 230 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l 230 (390)
..+.++|.+..++.|..++..++. ..+.++|++|+||||+|+.+++.....+.+...+|.|.+.. .+.......+..+
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv~el 90 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDVLEI 90 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCceEEe
Confidence 355789998888889888887764 46689999999999999999988753222222222221110 0000000000000
Q ss_pred CCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEec-chhhhhhcCCCcc
Q 042806 231 GLTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTAR-SLDVLSRKMDSQQ 303 (390)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr-~~~v~~~~~~~~~ 303 (390)
. .........+..+.+.+. .+++-++|+|+++.. ..++.+...+......+.+|++|. ...+.........
T Consensus 91 ~--~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 91 D--AASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQ 168 (504)
T ss_pred c--ccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceE
Confidence 0 000011112223333221 123469999999754 335555444433334555555554 3443322333456
Q ss_pred eEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHH-HHHHHhc
Q 042806 304 NFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIV-TVARALG 358 (390)
Q Consensus 304 ~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~-~l~~~L~ 358 (390)
.+++.+++.++..+.+.+.+....... .++....|++.++|.+--+. .+-.++.
T Consensus 169 ~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 169 HFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDAESLLERLLA 223 (504)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 899999999999999998875222222 24567889999999986554 4434333
No 33
>PRK04195 replication factor C large subunit; Provisional
Probab=98.81 E-value=1.2e-07 Score=93.94 Aligned_cols=184 Identities=16% Similarity=0.145 Sum_probs=111.1
Q ss_pred cCcccccchhHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 042806 151 KDYEACESRMSTLNDILDALKN----PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEI 226 (390)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i 226 (390)
.....++|++..++.|.+|+.. ...+.+.|+|++|+||||+|+.+++... |+ .+-++.+...+.. .+..+
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~~ 84 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIERV 84 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHHH
Confidence 3356789999999999888763 2267899999999999999999999874 33 3344555433332 22333
Q ss_pred HHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcc------cccccCCCCCCCCCcEEEEEecchh-hhh-hc
Q 042806 227 ADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNLD------FQAVGIPHGDDRKGCKVLLTARSLD-VLS-RK 298 (390)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~------~~~l~~~l~~~~~~s~IivTtr~~~-v~~-~~ 298 (390)
+........ +.+.++-+||||+++.... +..+...+. ..+..||+|+.... ... ..
T Consensus 85 i~~~~~~~s--------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 85 AGEAATSGS--------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHhhccCc--------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhH
Confidence 222211100 0111347999999976422 333333322 23344666665422 111 12
Q ss_pred CCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042806 299 MDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARAL 357 (390)
Q Consensus 299 ~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L 357 (390)
......+++.+++.++....+...+.......+ .++...|++.++|-.-.+......+
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~-~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECD-DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 234468999999999999998887742222122 4567889999988766655443333
No 34
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=2.7e-07 Score=90.98 Aligned_cols=197 Identities=12% Similarity=0.127 Sum_probs=111.5
Q ss_pred CcccccchhHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe-EEEEEeCCCCCHHHHHHHHHHH
Q 042806 152 DYEACESRMSTLNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQ-VIFVEVSKIQDIRKIQGEIADK 229 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~l~~~i~~~ 229 (390)
....++|.+..+..|...+..++ ...+.++|+.|+||||+|+.+++.......... ..+..+..+.+ ...+...
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~----C~~i~~~ 94 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN----CISFNNH 94 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH----HHHHhcC
Confidence 35578899988888888777665 467889999999999999999988643211100 00000010000 0001000
Q ss_pred hCC-----CCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEE-Eecchhhhhh
Q 042806 230 LGL-----TLHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLL-TARSLDVLSR 297 (390)
Q Consensus 230 l~~-----~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~Iiv-Ttr~~~v~~~ 297 (390)
... +.........+..+.+... .+++-++|+|+++.. ..++.+...+....+.+.+|+ ||+...+...
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 000 0000001111222222221 123368999999865 346666555544445556554 4444454433
Q ss_pred cCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 298 KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
.......+++.+++.++....+.+.+.......+ ++....|++.++|.+--+..+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie-~eAL~~Ia~~s~GslR~al~~ 229 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD-IEALRIIAYKSEGSARDAVSI 229 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 3334468999999999999999988853222222 345678999999987555443
No 35
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=2.1e-07 Score=91.35 Aligned_cols=188 Identities=16% Similarity=0.161 Sum_probs=110.1
Q ss_pred cccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCC--C-----------------CeEEEEE
Q 042806 153 YEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKL--F-----------------DQVIFVE 212 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~--f-----------------~~~~wv~ 212 (390)
...++|.+.....|...+..++. +.+.++|++|+||||+|+.+++....... + .....++
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 45789998888888888887765 45889999999999999999887643211 0 0112222
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEec
Q 042806 213 VSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTAR 290 (390)
Q Consensus 213 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr 290 (390)
.+......++ +.+....... -. .+++-++|+|+++.. ...+.+...+......+.+|++|.
T Consensus 93 aa~~~gid~i-R~i~~~~~~~---------------p~-~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilatt 155 (472)
T PRK14962 93 AASNRGIDEI-RKIRDAVGYR---------------PM-EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATT 155 (472)
T ss_pred CcccCCHHHH-HHHHHHHhhC---------------hh-cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeC
Confidence 2211122211 1222111100 00 123369999999754 233444333333233444444444
Q ss_pred c-hhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcC-CChHHHHHHHHHhc
Q 042806 291 S-LDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECA-GLPVSIVTVARALG 358 (390)
Q Consensus 291 ~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~-GlPLai~~l~~~L~ 358 (390)
+ ..+..........+++.+++.++....+...+......- .++....|++.++ +++.++..+-.+..
T Consensus 156 n~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i-~~eal~~Ia~~s~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 156 NLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI-DREALSFIAKRASGGLRDALTMLEQVWK 224 (472)
T ss_pred ChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3 444333334456899999999999999888774221111 2446778888775 56778777766543
No 36
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.79 E-value=5.2e-08 Score=79.97 Aligned_cols=123 Identities=20% Similarity=0.183 Sum_probs=72.5
Q ss_pred cchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 042806 157 ESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHE 236 (390)
Q Consensus 157 ~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~ 236 (390)
.|++..+..+...+..+..+.+.|+|++|+|||++++.+++..... -..++++..+...........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 3677888888888877677889999999999999999999987532 2345666665543322221111100
Q ss_pred CCchHHHHHHHHHHhCCCeEEEEEeCCCCC-----cccccccCCCCC---CCCCcEEEEEecchh
Q 042806 237 ESDSGRARSLRNRLKKEKTILVILDNIWGN-----LDFQAVGIPHGD---DRKGCKVLLTARSLD 293 (390)
Q Consensus 237 ~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~-----~~~~~l~~~l~~---~~~~s~IivTtr~~~ 293 (390)
............++.++++||++.. ..+..+...+.. ...+..||+||....
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111111234489999999853 122222122211 135778888888643
No 37
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=1.3e-07 Score=91.57 Aligned_cols=199 Identities=14% Similarity=0.109 Sum_probs=114.2
Q ss_pred cCcccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042806 151 KDYEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADK 229 (390)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~ 229 (390)
.....++|.+..+..|..++..++. ..+.++|+.|+||||+|+.+++......... ...+..+.+-..+.......
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC~~i~~g~~~d 91 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSCLEITKGISSD 91 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHHHHHHccCCcc
Confidence 3356789999999999999888775 4688999999999999999998864321111 00111111111111110000
Q ss_pred hC-CCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEec-chhhhhhcCCC
Q 042806 230 LG-LTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTAR-SLDVLSRKMDS 301 (390)
Q Consensus 230 l~-~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr-~~~v~~~~~~~ 301 (390)
+. .+.........+..+.+.+. .++.-++|+|+++.. ..++.+...+-.-.....+|++|. ...+......-
T Consensus 92 viEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 92 VLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR 171 (484)
T ss_pred ceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh
Confidence 00 00000011122233333332 234469999999855 446666544433334455554444 44443333334
Q ss_pred cceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 302 QQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 302 ~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
...|.+.+++.++..+.+.+.+......- .++....|++.++|.+--...+
T Consensus 172 Cq~~~f~~ls~~~i~~~L~~i~~~Egi~~-e~eAL~~Ia~~S~Gd~RdAL~l 222 (484)
T PRK14956 172 CQDFIFKKVPLSVLQDYSEKLCKIENVQY-DQEGLFWIAKKGDGSVRDMLSF 222 (484)
T ss_pred hheeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCChHHHHHHH
Confidence 46899999999999999988875222222 2456789999999998544433
No 38
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.75 E-value=4.1e-07 Score=81.54 Aligned_cols=167 Identities=13% Similarity=0.067 Sum_probs=100.7
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHH
Q 042806 163 LNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGR 242 (390)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~ 242 (390)
+..+..+...+..+.+.|+|++|+|||+|++.+++..... -..+.|+.+....+ .
T Consensus 33 ~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~-----------------------~ 87 (235)
T PRK08084 33 LAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW-----------------------F 87 (235)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh-----------------------h
Confidence 3444444444555788999999999999999999986543 23456665533100 0
Q ss_pred HHHHHHHHhCCCeEEEEEeCCCCC---ccccc-ccCCCCC--CCCCcEEEEEecchhhh--------hhcCCCcceEecC
Q 042806 243 ARSLRNRLKKEKTILVILDNIWGN---LDFQA-VGIPHGD--DRKGCKVLLTARSLDVL--------SRKMDSQQNFSVG 308 (390)
Q Consensus 243 ~~~l~~~l~~~~~~LlVlDdv~~~---~~~~~-l~~~l~~--~~~~s~IivTtr~~~v~--------~~~~~~~~~~~l~ 308 (390)
...+.+.+..- -+|++||++.. ..|+. +...+.. ...+.++|+||+..... ......+.+++++
T Consensus 88 ~~~~~~~~~~~--dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~ 165 (235)
T PRK08084 88 VPEVLEGMEQL--SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQ 165 (235)
T ss_pred hHHHHHHhhhC--CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeec
Confidence 01112222221 38899999753 33432 2111111 12234788888853211 1134556799999
Q ss_pred CCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042806 309 VLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARAL 357 (390)
Q Consensus 309 ~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L 357 (390)
+++.++-.+++.+.+..... .--+++...|++.+.|..-.+..+-..|
T Consensus 166 ~~~~~~~~~~l~~~a~~~~~-~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 166 PLSDEEKLQALQLRARLRGF-ELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 99999999999886643212 2225688899999998777766655444
No 39
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.75 E-value=1.7e-07 Score=94.48 Aligned_cols=196 Identities=13% Similarity=0.131 Sum_probs=111.4
Q ss_pred cCcccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042806 151 KDYEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADK 229 (390)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~ 229 (390)
.....++|.+..+..|...+..++. ..+.++|+.|+||||+|+.+.+.......+... .+..+ ...+.|...
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~---pCg~C----~~C~~i~~g 85 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITAT---PCGEC----DNCREIEQG 85 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCC---CCCCC----HHHHHHHcC
Confidence 3356789999999999998887765 457899999999999999998876432111000 00000 111111100
Q ss_pred hC-----CCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecc-hhhhhh
Q 042806 230 LG-----LTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARS-LDVLSR 297 (390)
Q Consensus 230 l~-----~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~-~~v~~~ 297 (390)
-. .+.......+.+..+.+.+. .++.-++|+|+++.. ...+.+...+-.-....++|++|.+ ..+...
T Consensus 86 ~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 86 RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchH
Confidence 00 00000001112222222221 234469999999754 3455554444333345555555544 444322
Q ss_pred cCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042806 298 KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
...-...|++++++.++....+.+.+....... .+.....|++.++|.|--+..+.
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~-e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF-EPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 233347999999999999999988764221112 23456789999999887554443
No 40
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=3.4e-07 Score=92.05 Aligned_cols=197 Identities=11% Similarity=0.111 Sum_probs=111.6
Q ss_pred CcccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCC--CCeEEEEEeCCCCCHHHHHHHHHH
Q 042806 152 DYEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKL--FDQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~--f~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
...+++|.+..+..|.+++..++. ..+.++|+.|+||||+|+.+.+...-.+. ......-.++.+ ...+.|..
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C----~~C~~i~~ 89 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC----QACRDIDS 89 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc----HHHHHHHc
Confidence 355789988888999999887765 56789999999999999999777532110 000000001111 11111100
Q ss_pred HhC-----CCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEec-chhhhh
Q 042806 229 KLG-----LTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTAR-SLDVLS 296 (390)
Q Consensus 229 ~l~-----~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr-~~~v~~ 296 (390)
.-. .+.......+.+..+.+.+. .++.-++|||+++.. ..++.+...+-.-...+++|++|. ...+..
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 000 00000001111222222221 123358999999855 345555555544344556665554 344433
Q ss_pred hcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 297 RKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 297 ~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
....-...+++++++.++..+.+.+.+.......+ .+....|++.++|.+--+..+
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie-~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE-PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 23344579999999999999999887752222222 346788999999987655554
No 41
>PRK09087 hypothetical protein; Validated
Probab=98.73 E-value=2.3e-07 Score=82.40 Aligned_cols=143 Identities=16% Similarity=0.118 Sum_probs=88.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKE 253 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (390)
..+.+.|+|++|+|||+|++.+++.... .|++.. ++..++.. .+..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~~--------------------~~~~- 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAAN--------------------AAAE- 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHHH--------------------hhhc-
Confidence 3567899999999999999998876421 233221 11111111 1111
Q ss_pred CeEEEEEeCCCCCc-ccccccCCCCC-CCCCcEEEEEecch---------hhhhhcCCCcceEecCCCCHHHHHHHHHHh
Q 042806 254 KTILVILDNIWGNL-DFQAVGIPHGD-DRKGCKVLLTARSL---------DVLSRKMDSQQNFSVGVLKEDEAWSLFKKM 322 (390)
Q Consensus 254 ~~~LlVlDdv~~~~-~~~~l~~~l~~-~~~~s~IivTtr~~---------~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~ 322 (390)
-+|++||+.... .-+.+...+.. ...|..+|+|++.. .+.+ .+..+..+++++++.++-.+++.+.
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S-Rl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS-RLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH-HHhCCceeecCCCCHHHHHHHHHHH
Confidence 278889996432 11122222211 23366788888742 1211 3456679999999999999999988
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042806 323 AGDYIEGSEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
+...... --+++...|++.+.|..-++..+-
T Consensus 166 ~~~~~~~-l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 166 FADRQLY-VDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHcCCC-CCHHHHHHHHHHhhhhHHHHHHHH
Confidence 8532221 225678899999999888877543
No 42
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=2.8e-07 Score=91.33 Aligned_cols=186 Identities=13% Similarity=0.146 Sum_probs=112.3
Q ss_pred cCcccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCCC-------------------CeEEE
Q 042806 151 KDYEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKLF-------------------DQVIF 210 (390)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f-------------------~~~~w 210 (390)
....+++|-+..+..|.+++..++. ..+.++|+.|+||||+|+.+.+...-...+ ...+.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 3356789999999999999987765 457899999999999999999876432111 11233
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEE
Q 042806 211 VEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLT 288 (390)
Q Consensus 211 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivT 288 (390)
+..+....++++ +++...+.... ..++.-++|+|+++.. ...+.+...+-.-.+.+++|++
T Consensus 93 idaas~~~v~~i-R~l~~~~~~~p----------------~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 93 VDAASRTKVEDT-RELLDNIPYAP----------------TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred EcccccCCHHHH-HHHHHHHhhcc----------------ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 332222222221 22222221110 1234358999999854 3444454444333446666665
Q ss_pred ecc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042806 289 ARS-LDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 289 tr~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
|.+ ..+......-...+++++++.++....+.+.+.......+ ++....|++.++|.|--+..+-
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~-~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE-NAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHHHHHH
Confidence 544 3333222233468899999999988887777642222222 3456789999999886555443
No 43
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.71 E-value=8.8e-07 Score=84.61 Aligned_cols=184 Identities=15% Similarity=0.158 Sum_probs=110.8
Q ss_pred cccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcC--------------------CCCeEEEE
Q 042806 153 YEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEK--------------------LFDQVIFV 211 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~--------------------~f~~~~wv 211 (390)
...++|.+..++.+.+++..++. +.+.++|++|+||||+|+.+........ +++. .++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~ 91 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEI 91 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEe
Confidence 45789999999999999987664 4678999999999999999988864211 1221 222
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEe
Q 042806 212 EVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTA 289 (390)
Q Consensus 212 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTt 289 (390)
..+......+ .+.+...+...+ ..+++ -++|+|+++.. ...+.+...+....+.+.+|++|
T Consensus 92 ~~~~~~~~~~-~~~l~~~~~~~p---------------~~~~~-~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~ 154 (355)
T TIGR02397 92 DAASNNGVDD-IREILDNVKYAP---------------SSGKY-KVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILAT 154 (355)
T ss_pred eccccCCHHH-HHHHHHHHhcCc---------------ccCCc-eEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEe
Confidence 2221111111 122222221100 01223 58899998654 33444444443334456666676
Q ss_pred cchh-hhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042806 290 RSLD-VLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVAR 355 (390)
Q Consensus 290 r~~~-v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~ 355 (390)
.+.. +..........+++.+++.++..+++...+.......+ ++.+..+++.++|.|..+.....
T Consensus 155 ~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~-~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 155 TEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE-DEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred CCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCChHHHHHHHH
Confidence 5433 22222233468899999999999999887742211111 35678899999999976665543
No 44
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=6.4e-07 Score=88.91 Aligned_cols=187 Identities=14% Similarity=0.173 Sum_probs=110.3
Q ss_pred CcccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------CCCeEEEE
Q 042806 152 DYEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEK-------------------LFDQVIFV 211 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~f~~~~wv 211 (390)
....++|.+..++.|...+..++. ..+.++|+.|+||||+|+.+++...... .|...+++
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 355788999999999999887654 5578999999999999999998754211 11122222
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEe
Q 042806 212 EVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTA 289 (390)
Q Consensus 212 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTt 289 (390)
........+++ +.+...+ ...-..+++-++|+|+++.. ..++.+...+-.....+.+|++|
T Consensus 94 daas~~gvd~i-r~ii~~~----------------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 94 DAASRTGVEET-KEILDNI----------------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred ecccccCHHHH-HHHHHHH----------------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 22111111111 1111111 11101123369999999754 34555554443333455566555
Q ss_pred cc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChH-HHHHHHHH
Q 042806 290 RS-LDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPV-SIVTVARA 356 (390)
Q Consensus 290 r~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPL-ai~~l~~~ 356 (390)
.+ ..+......-...+++++++.++....+.+.+....... .+.....|++.++|-+- |+..+-.+
T Consensus 157 td~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~-e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 157 TDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS-DEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred CChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 43 333322233457999999999999888887664222222 24456789999999664 55555433
No 45
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=6e-07 Score=87.89 Aligned_cols=184 Identities=13% Similarity=0.108 Sum_probs=112.5
Q ss_pred CcccccchhHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhc-------------------CCCCeEEEE
Q 042806 152 DYEACESRMSTLNDILDALKNPDVN-MLGIYGMGGIVKTTLAKEVARKAETE-------------------KLFDQVIFV 211 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~-------------------~~f~~~~wv 211 (390)
...+++|.+..+..|.+.+..++.. .+.++|+.|+||||+|+.+.....-. +.+..++.+
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 3557899998888888888877654 78999999999999999998754211 011123344
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEe
Q 042806 212 EVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTA 289 (390)
Q Consensus 212 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTt 289 (390)
+.+......+ .+.+.......+ + .++.-++|+|+++.. ...+.+...+-.-.+.+++|++|
T Consensus 91 daas~~~vdd-IR~Iie~~~~~P---------------~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 91 DAASNTSVDD-IKVILENSCYLP---------------I-SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred ecccCCCHHH-HHHHHHHHHhcc---------------c-cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 4433333332 222222221100 0 123358999999754 33445544443334556666655
Q ss_pred cc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 290 RS-LDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 290 r~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
.. ..+......-...+++.+++.++..+.+.+.+......-+ ++....|++.++|.+-.+..+
T Consensus 154 te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~-~eAL~lIa~~s~GslR~alsl 217 (491)
T PRK14964 154 TEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD-EESLKLIAENSSGSMRNALFL 217 (491)
T ss_pred CChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 43 4443333344578999999999999999888753222222 345678999999988654443
No 46
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.70 E-value=2e-07 Score=82.45 Aligned_cols=164 Identities=20% Similarity=0.199 Sum_probs=100.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEK 254 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 254 (390)
...+.|+|+.|+|||.|++.+++.......-..++|+ +..++...+...+.. .....+.+.+..-.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~------~~~~f~~~~~~~~~~--------~~~~~~~~~~~~~D 99 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL------SAEEFIREFADALRD--------GEIEEFKDRLRSAD 99 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE------EHHHHHHHHHHHHHT--------TSHHHHHHHHCTSS
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceee------cHHHHHHHHHHHHHc--------ccchhhhhhhhcCC
Confidence 4568899999999999999999997653222235554 445666666665543 12345666666544
Q ss_pred eEEEEEeCCCCCc---cccc-ccCCCCC-CCCCcEEEEEecchhh-h-------hhcCCCcceEecCCCCHHHHHHHHHH
Q 042806 255 TILVILDNIWGNL---DFQA-VGIPHGD-DRKGCKVLLTARSLDV-L-------SRKMDSQQNFSVGVLKEDEAWSLFKK 321 (390)
Q Consensus 255 ~~LlVlDdv~~~~---~~~~-l~~~l~~-~~~~s~IivTtr~~~v-~-------~~~~~~~~~~~l~~L~~~ea~~lf~~ 321 (390)
+|++||++... .|+. +...+.. ...|.+||+|+...-. . ...+..+..+++.+++.++-..++.+
T Consensus 100 --lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 100 --LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp --EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred --EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 99999997542 2322 2111111 1346689999964211 0 11344667999999999999999999
Q ss_pred hhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042806 322 MAGDYIEGSEFKWVAKDVARECAGLPVSIVTVAR 355 (390)
Q Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~ 355 (390)
.+...... --++++..|++.+.+..-.+..+-.
T Consensus 178 ~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 178 KAKERGIE-LPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHTT---S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHhCCC-CcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 88622222 2256788899998877766665543
No 47
>PRK08727 hypothetical protein; Validated
Probab=98.70 E-value=3.8e-07 Score=81.65 Aligned_cols=152 Identities=16% Similarity=0.103 Sum_probs=92.3
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh
Q 042806 172 NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLK 251 (390)
Q Consensus 172 ~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 251 (390)
+.....+.|+|++|+|||+|++.+++..... ...+.|+++.. ....+. ...+.+.
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~~-----------------~~~~~l~ 92 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRLR-----------------DALEALE 92 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhHH-----------------HHHHHHh
Confidence 3344569999999999999999999987644 22455665422 111111 1122332
Q ss_pred CCCeEEEEEeCCCCCc---cccc-ccCCCCC-CCCCcEEEEEecchhhh--------hhcCCCcceEecCCCCHHHHHHH
Q 042806 252 KEKTILVILDNIWGNL---DFQA-VGIPHGD-DRKGCKVLLTARSLDVL--------SRKMDSQQNFSVGVLKEDEAWSL 318 (390)
Q Consensus 252 ~~~~~LlVlDdv~~~~---~~~~-l~~~l~~-~~~~s~IivTtr~~~v~--------~~~~~~~~~~~l~~L~~~ea~~l 318 (390)
+ .-+||+||+.... .|.. +...+.. ...+..||+|++...-. ...+.....+++++++.++-.++
T Consensus 93 ~--~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~i 170 (233)
T PRK08727 93 G--RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAV 170 (233)
T ss_pred c--CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHH
Confidence 2 2599999997442 2332 2211111 12456799999852110 11233456899999999999999
Q ss_pred HHHhhCCCCCCCchHHHHHHHHHHcCCChHHHH
Q 042806 319 FKKMAGDYIEGSEFKWVAKDVARECAGLPVSIV 351 (390)
Q Consensus 319 f~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~ 351 (390)
+.+.+....... .++....|++.++|-.-.+.
T Consensus 171 L~~~a~~~~l~l-~~e~~~~La~~~~rd~r~~l 202 (233)
T PRK08727 171 LRERAQRRGLAL-DEAAIDWLLTHGERELAGLV 202 (233)
T ss_pred HHHHHHHcCCCC-CHHHHHHHHHhCCCCHHHHH
Confidence 998775222212 24577899999987766653
No 48
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=8.8e-07 Score=83.75 Aligned_cols=199 Identities=14% Similarity=0.060 Sum_probs=115.2
Q ss_pred ccCcccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCC--CCeEEEEEeCCCCCHHHHHHHH
Q 042806 150 IKDYEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKL--FDQVIFVEVSKIQDIRKIQGEI 226 (390)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~--f~~~~wv~v~~~~~~~~l~~~i 226 (390)
|.....++|.+.....+...+..++. ..+.|+|+.|+||||+|..+....-.... +... .....+..-...+.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 33456789999999999999987764 46889999999999999999988643110 1111 001011111122333
Q ss_pred HHHhC-------CCCCCC----C---chHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcE-E
Q 042806 227 ADKLG-------LTLHEE----S---DSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCK-V 285 (390)
Q Consensus 227 ~~~l~-------~~~~~~----~---~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~-I 285 (390)
...-. ...+.. . ..+.+..+.+++. .+++-++|+|+++.. ...+.+...+..-..++. |
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 22110 000000 0 1123445555553 234469999999754 233334333322223344 4
Q ss_pred EEEecchhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042806 286 LLTARSLDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 286 ivTtr~~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
++|++...+.....+-...+++.+++.++..+++.+...... -.++....+++.++|.|.....+.
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 455444444333333446999999999999999988542211 113456789999999998766554
No 49
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.69 E-value=8.1e-07 Score=76.85 Aligned_cols=160 Identities=18% Similarity=0.122 Sum_probs=93.9
Q ss_pred HHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhc--------------------CCCCeEEEEEeCC-CCCHHHH
Q 042806 165 DILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETE--------------------KLFDQVIFVEVSK-IQDIRKI 222 (390)
Q Consensus 165 ~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~v~~-~~~~~~l 222 (390)
.+.+.+..++. ..+.++|+.|+||||+|+.+....-.. .+.+. .++.... ....++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~- 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ- 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH-
Confidence 35555656655 678999999999999999998886432 11221 2221111 111111
Q ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecch-hhhhhcC
Q 042806 223 QGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARSL-DVLSRKM 299 (390)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~~-~v~~~~~ 299 (390)
.+.+...+..... .+.+-++|+|+++.. ...+.+...+......+.+|++|++. .+.....
T Consensus 81 i~~i~~~~~~~~~----------------~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 81 VRELVEFLSRTPQ----------------ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred HHHHHHHHccCcc----------------cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 1222222211100 123368999999754 23444544443334456677766643 3322222
Q ss_pred CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHH
Q 042806 300 DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVS 349 (390)
Q Consensus 300 ~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLa 349 (390)
.....+++.+++.++..+.+.+. + .. ++.+..|++.++|.|..
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~-g--i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ-G--IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc-C--CC----HHHHHHHHHHcCCCccc
Confidence 33469999999999999998876 2 11 35678999999998853
No 50
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=7.3e-07 Score=85.47 Aligned_cols=172 Identities=14% Similarity=0.072 Sum_probs=103.5
Q ss_pred ccccchhHHHHHHHHHhcCCC----------ccEEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------C
Q 042806 154 EACESRMSTLNDILDALKNPD----------VNMLGIYGMGGIVKTTLAKEVARKAETEK-------------------L 204 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~~~----------~~vi~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~ 204 (390)
..++|.+..++.|.+++..+. .+.+.++|++|+|||++|+.+....--.. |
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 457888888888888887653 46688999999999999999987643211 1
Q ss_pred CCeEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCC
Q 042806 205 FDQVIFVEVS-KIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHG 277 (390)
Q Consensus 205 f~~~~wv~v~-~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~ 277 (390)
.| ..++... ....+++ +..+.+.+. .+++-++++|+++.. ...+.+...+-
T Consensus 85 pD-~~~i~~~~~~i~i~~---------------------iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE 142 (394)
T PRK07940 85 PD-VRVVAPEGLSIGVDE---------------------VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE 142 (394)
T ss_pred CC-EEEeccccccCCHHH---------------------HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh
Confidence 22 1122111 1111111 222222221 123358888999754 23333433333
Q ss_pred CCCCCcEEEEEecc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 278 DDRKGCKVLLTARS-LDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 278 ~~~~~s~IivTtr~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
.-.++..+|++|.+ ..+......-...+.+.+++.++..+.+.+..+ .. .+.+..++..++|.|.....+
T Consensus 143 ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 143 EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 33345556666655 444333333446999999999999988875432 11 345678999999999755433
No 51
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=1.2e-06 Score=83.19 Aligned_cols=196 Identities=16% Similarity=0.054 Sum_probs=113.1
Q ss_pred cCcccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEE------EEEeCCCCCHHHHH
Q 042806 151 KDYEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVI------FVEVSKIQDIRKIQ 223 (390)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~------wv~v~~~~~~~~l~ 223 (390)
.....++|.+.....|.+.+..++. ..+.++|+.|+||+|+|..+....--........ -..+...+ ...
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~c 92 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PVA 92 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hHH
Confidence 3356789999999999999888764 4688999999999999999988764321110000 00000000 011
Q ss_pred HHHHHHhCCC-------CCCCC-------chHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCc
Q 042806 224 GEIADKLGLT-------LHEES-------DSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGC 283 (390)
Q Consensus 224 ~~i~~~l~~~-------~~~~~-------~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s 283 (390)
+.+...-..+ .++.. ..+.+..+.+.+. .+++-++|+|+++.. ...+.+...+..-.+++
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 1111100000 00000 0122334444442 244479999999754 33444444443333456
Q ss_pred EEEEEecch-hhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042806 284 KVLLTARSL-DVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 284 ~IivTtr~~-~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
.+|++|.+. .+......-...+.+.+++.++..+++.+.... .. +.....++..++|.|+....+.
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~--~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP--DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC--HHHHHHHHHHcCCCHHHHHHHh
Confidence 667766654 443333445579999999999999999876521 11 1122578999999998665553
No 52
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.68 E-value=9.2e-08 Score=82.27 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=34.7
Q ss_pred cccchhHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 155 ACESRMSTLNDILDALK---NPDVNMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
.|+||+.+++++...+. ....+.+.|+|++|+|||+|++.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999982 3457899999999999999999999998776
No 53
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=5.3e-07 Score=89.73 Aligned_cols=195 Identities=13% Similarity=0.099 Sum_probs=108.6
Q ss_pred CcccccchhHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042806 152 DYEACESRMSTLNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL 230 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l 230 (390)
....++|++..++.+.+++..++ .+.+.++|+.|+||||+|+.+.+......+.. ... +..-...+.+....
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~------~~~-Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKD------GDC-CNSCSVCESINTNQ 86 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCC-CcccHHHHHHHcCC
Confidence 35578999999999999987765 45788999999999999999998864321111 000 00001111111110
Q ss_pred CCC-----CCCCCchHHHHHHHHHHh-----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEe-cchhhhhh
Q 042806 231 GLT-----LHEESDSGRARSLRNRLK-----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTA-RSLDVLSR 297 (390)
Q Consensus 231 ~~~-----~~~~~~~~~~~~l~~~l~-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTt-r~~~v~~~ 297 (390)
... .......+.+..+.+.+. .++ -++|+|+++.. ..++.+...+-.-...+.+|++| ....+...
T Consensus 87 h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~-KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 87 SVDIVELDAASNNGVDEIRNIIDNINYLPTTFKY-KVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCceEEeccccccCHHHHHHHHHHHHhchhhCCc-EEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 000 000000111222222211 233 47999999754 34455544443323345555444 43444322
Q ss_pred cCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChH-HHHHHHH
Q 042806 298 KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPV-SIVTVAR 355 (390)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPL-ai~~l~~ 355 (390)
.......+++.+++.++....+...+......-+ .+.+..+++.++|.+- |+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is-~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE-DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2333468999999999999999887742211111 3457789999999664 5555444
No 54
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.66 E-value=2.8e-07 Score=96.72 Aligned_cols=204 Identities=14% Similarity=0.126 Sum_probs=119.5
Q ss_pred cccchhHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCCeEEEEEeCCCC---CHHHHHHHHH
Q 042806 155 ACESRMSTLNDILDALKN---PDVNMLGIYGMGGIVKTTLAKEVARKAETE-KLFDQVIFVEVSKIQ---DIRKIQGEIA 227 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~---~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~-~~f~~~~wv~v~~~~---~~~~l~~~i~ 227 (390)
+++||+.+++.|...+.+ +...++.|.|.+|+|||+|++.|......+ +.|-...+-...... ...+.+++++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 368999999999888764 567799999999999999999999887544 111111111112222 2233334444
Q ss_pred HHh-------------------CCCCC------------------CC--Cc------h--HHHHHHHHHHhCCCeEEEEE
Q 042806 228 DKL-------------------GLTLH------------------EE--SD------S--GRARSLRNRLKKEKTILVIL 260 (390)
Q Consensus 228 ~~l-------------------~~~~~------------------~~--~~------~--~~~~~l~~~l~~~~~~LlVl 260 (390)
.++ +.... .. +. . .....+.......+|.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 433 11000 00 00 0 01123333444566799999
Q ss_pred eCCC-C-Ccccccc---cCCCC---CCCCCcEEEEEecch-hhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCc
Q 042806 261 DNIW-G-NLDFQAV---GIPHG---DDRKGCKVLLTARSL-DVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSE 331 (390)
Q Consensus 261 Ddv~-~-~~~~~~l---~~~l~---~~~~~s~IivTtr~~-~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~ 331 (390)
||++ - ...++-+ ....+ ...+..-.+.|.+.. ............|.|.||+..+...+....++.....
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~-- 238 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL-- 238 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc--
Confidence 9994 2 2222222 11111 001111233333332 1112234455799999999999999999998742222
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhcCC
Q 042806 332 FKWVAKDVARECAGLPVSIVTVARALGTR 360 (390)
Q Consensus 332 ~~~~~~~i~~~~~GlPLai~~l~~~L~~~ 360 (390)
..+....|+++..|+|+-+..+-..|...
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~ 267 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEE 267 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhC
Confidence 23457899999999999999999888764
No 55
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=5.3e-07 Score=90.71 Aligned_cols=182 Identities=14% Similarity=0.140 Sum_probs=109.4
Q ss_pred cCcccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCCC-------------------CeEEE
Q 042806 151 KDYEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKLF-------------------DQVIF 210 (390)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f-------------------~~~~w 210 (390)
.....++|.+..+..|..++..++. ..+.++|+.|+||||+|+.+.+........ -..+.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlE 92 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLE 92 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEE
Confidence 3356789999999999999987764 568899999999999999998875322111 01112
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCCc--ccccccCCCCCCCCCcE
Q 042806 211 VEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGNL--DFQAVGIPHGDDRKGCK 284 (390)
Q Consensus 211 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ 284 (390)
+.......+ ..+..+.+... .++.-++|+|+++... ..+.+...+-.-...++
T Consensus 93 idaAs~~gV---------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 93 IDAASNTGI---------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred EeccccCCH---------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 221111111 11222222110 1233699999997543 23334333322234566
Q ss_pred EEEEecc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042806 285 VLLTARS-LDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 285 IivTtr~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
+|++|.+ ..+.....+-...+++++++.++....+.+.+....... .++....|++.++|.+.-+..+-
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i-d~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY-EPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCCCHHHHHHHH
Confidence 7766654 333222222335788899999999999988875322222 24467899999999986555543
No 56
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.65 E-value=7.2e-08 Score=86.55 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=62.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCchH---H----HH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI--QDIRKIQGEIADKLGLTLHEESDSG---R----AR 244 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~l~~~i~~~l~~~~~~~~~~~---~----~~ 244 (390)
....+.|+|++|+|||||++.+++..... +|+..+|+.+.+. ++..++++.+...+-....+.+... . ..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999998764 7999999997766 7899999998333221111111111 1 11
Q ss_pred HHHHHHhCCCeEEEEEeCCCC
Q 042806 245 SLRNRLKKEKTILVILDNIWG 265 (390)
Q Consensus 245 ~l~~~l~~~~~~LlVlDdv~~ 265 (390)
........+++.++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 222222346679999999964
No 57
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.65 E-value=5.2e-07 Score=92.69 Aligned_cols=177 Identities=18% Similarity=0.208 Sum_probs=101.2
Q ss_pred cCcccccchhHHHH---HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 042806 151 KDYEACESRMSTLN---DILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 151 ~~~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~ 227 (390)
...+.|+|++..+. .+...+..++...+.++|++|+||||||+.+++.... +|. .++... ....++ +.
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f~---~lna~~-~~i~di-r~-- 95 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA--HFS---SLNAVL-AGVKDL-RA-- 95 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC--cce---eehhhh-hhhHHH-HH--
Confidence 34557889887764 4666677777777889999999999999999987642 231 111110 011111 11
Q ss_pred HHhCCCCCCCCchHHHHHHHHHHh-CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEE--ecchh--hhhhcCC
Q 042806 228 DKLGLTLHEESDSGRARSLRNRLK-KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLT--ARSLD--VLSRKMD 300 (390)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivT--tr~~~--v~~~~~~ 300 (390)
......+.+. .+++.+|+|||++.. ..++.+...+ ..++.++++ |.+.. +......
T Consensus 96 --------------~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 96 --------------EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred --------------HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhc
Confidence 1111111121 123479999999754 2334443322 235545553 33321 2111222
Q ss_pred CcceEecCCCCHHHHHHHHHHhhCC------CCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 301 SQQNFSVGVLKEDEAWSLFKKMAGD------YIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 301 ~~~~~~l~~L~~~ea~~lf~~~~~~------~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
-...+.+++|+.++...++.+.+.. .....-.++....|++.+.|..-.+..+
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~ 217 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNA 217 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 2458999999999999999887641 1111222456788999998865444333
No 58
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.63 E-value=3.7e-06 Score=73.06 Aligned_cols=180 Identities=18% Similarity=0.149 Sum_probs=94.7
Q ss_pred ccCcccccchhHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 042806 150 IKDYEACESRMSTLNDILDALK-----NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQG 224 (390)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~ 224 (390)
|...++|+|.+.-+..+.-.+. ++...-+.+|||+|+||||||..+.+..... |. +.+.+......++.
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~---~~sg~~i~k~~dl~- 93 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FK---ITSGPAIEKAGDLA- 93 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC--SCHHHH-
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eE---eccchhhhhHHHHH-
Confidence 3446789999887776544332 2346678899999999999999999998754 32 22222111122221
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc---------ccccccC--CCCCC----------CCCc
Q 042806 225 EIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL---------DFQAVGI--PHGDD----------RKGC 283 (390)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---------~~~~l~~--~l~~~----------~~~s 283 (390)
.+...+.. + -+|.+|+++... ..++... ....+ .+-+
T Consensus 94 --------------------~il~~l~~-~-~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 94 --------------------AILTNLKE-G-DILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp --------------------HHHHT--T-T--EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred --------------------HHHHhcCC-C-cEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 11112222 2 467778886441 1111110 00000 1234
Q ss_pred EEEEEecchhhhhhcCC-CcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhc
Q 042806 284 KVLLTARSLDVLSRKMD-SQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARALG 358 (390)
Q Consensus 284 ~IivTtr~~~v~~~~~~-~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~ 358 (390)
-|=.|||...+.....+ .+-..+++..+.+|-.+++.+.+.--... -.++.+.+|+++|.|-|--..-+-+-.+
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~-i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE-IDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E-E-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC-cCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 46678887555321122 22356899999999999998877422221 2245789999999999988777665554
No 59
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1.9e-06 Score=82.72 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=104.8
Q ss_pred cccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhc------CCCCeE-EEEEeCCCCCHHHHHH
Q 042806 153 YEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETE------KLFDQV-IFVEVSKIQDIRKIQG 224 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~------~~f~~~-~wv~v~~~~~~~~l~~ 224 (390)
..+++|.+..++.+.+.+..++. +.+.++|++|+||||+|+.+.+..... ..|... +.+.........+ ..
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~ 94 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IR 94 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HH
Confidence 45788999999999999987664 578899999999999999998876431 112211 1111111111111 12
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc--ccccccCCCCCCCCCcEEEEEecc-hhhhhhcCCC
Q 042806 225 EIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL--DFQAVGIPHGDDRKGCKVLLTARS-LDVLSRKMDS 301 (390)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~IivTtr~-~~v~~~~~~~ 301 (390)
.+...+...+ ..+++ -++++|+++... .++.+...+......+.+|+++.. ..+.......
T Consensus 95 ~l~~~~~~~p---------------~~~~~-kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr 158 (367)
T PRK14970 95 NLIDQVRIPP---------------QTGKY-KIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSR 158 (367)
T ss_pred HHHHHHhhcc---------------ccCCc-EEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhc
Confidence 2222221100 01233 589999986542 244443333222334555555533 2322222233
Q ss_pred cceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHH
Q 042806 302 QQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVT 352 (390)
Q Consensus 302 ~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~ 352 (390)
...+++.+++.++....+...+......- .++.+..+++.++|.+-.+..
T Consensus 159 ~~~v~~~~~~~~~l~~~l~~~~~~~g~~i-~~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 159 CQIFDFKRITIKDIKEHLAGIAVKEGIKF-EDDALHIIAQKADGALRDALS 208 (367)
T ss_pred ceeEecCCccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHhCCCCHHHHHH
Confidence 45899999999999998888764222111 135678899999996654433
No 60
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.60 E-value=8.5e-07 Score=79.16 Aligned_cols=153 Identities=12% Similarity=0.057 Sum_probs=90.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKE 253 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (390)
..+.+.|+|++|+|||+||+.+++.....+ . ...+++..... .. + .....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~-~-~~~~i~~~~~~------~~----~-----------------~~~~~- 90 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGG-R-NARYLDAASPL------LA----F-----------------DFDPE- 90 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCC-C-cEEEEehHHhH------HH----H-----------------hhccc-
Confidence 456788999999999999999999864321 2 24455443311 00 0 11112
Q ss_pred CeEEEEEeCCCCCcccc--cccCCCCC-CCCCc-EEEEEecchhhhhh-------cCCCcceEecCCCCHHHHHHHHHHh
Q 042806 254 KTILVILDNIWGNLDFQ--AVGIPHGD-DRKGC-KVLLTARSLDVLSR-------KMDSQQNFSVGVLKEDEAWSLFKKM 322 (390)
Q Consensus 254 ~~~LlVlDdv~~~~~~~--~l~~~l~~-~~~~s-~IivTtr~~~v~~~-------~~~~~~~~~l~~L~~~ea~~lf~~~ 322 (390)
. -+|++||++....+. .+...+.. ...+. .+|+|++....... .......+++.+++.++-..++.+.
T Consensus 91 ~-~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 91 A-ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred C-CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2 478899997543222 22222211 12233 46666654221110 1223468999999998877777765
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhc
Q 042806 323 AGDYIEGSEFKWVAKDVARECAGLPVSIVTVARALG 358 (390)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~ 358 (390)
+....... .++....+++.+.|.+..+..+...|.
T Consensus 170 ~~~~~v~l-~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 170 AAERGLQL-ADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHcCCCC-CHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 53221222 245788899999999999888776654
No 61
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=8.9e-07 Score=85.64 Aligned_cols=200 Identities=13% Similarity=0.127 Sum_probs=110.0
Q ss_pred cccccchhHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE-eCCCCCHHHHHHHHHHHh
Q 042806 153 YEACESRMSTLNDILDALKNPDVN-MLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVE-VSKIQDIRKIQGEIADKL 230 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~-v~~~~~~~~l~~~i~~~l 230 (390)
...++|.+..++.|..++.+++.+ .+.++|+.|+||||+|+.+.+...-...+....|.. ....+..=...+.+...-
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 457889988888899988877654 588999999999999999998874321111111110 000000000011111000
Q ss_pred CC-----CCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCCc--ccccccCCCCCCCCCcEEEEEe-cchhhhhhc
Q 042806 231 GL-----TLHEESDSGRARSLRNRLK----KEKTILVILDNIWGNL--DFQAVGIPHGDDRKGCKVLLTA-RSLDVLSRK 298 (390)
Q Consensus 231 ~~-----~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~IivTt-r~~~v~~~~ 298 (390)
.. ........+.+..+.+.+. .+++-++|+|+++... .++.+...+..-.+.+.+|++| +...+....
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl 174 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (397)
T ss_pred CCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHH
Confidence 00 0000011122233333331 1233589999997553 4555544444334456666555 333332211
Q ss_pred CCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 299 MDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 299 ~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
......+++.+++.++..+.+...+......- .++.+..|++.++|.+--+...
T Consensus 175 ~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i-~~~al~~l~~~s~g~lr~a~~~ 228 (397)
T PRK14955 175 ASRCQRFNFKRIPLEEIQQQLQGICEAEGISV-DADALQLIGRKAQGSMRDAQSI 228 (397)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 22235889999999999988888764221111 1456789999999977644443
No 62
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1e-06 Score=87.83 Aligned_cols=184 Identities=15% Similarity=0.148 Sum_probs=107.8
Q ss_pred CcccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCC-------------------CCeEEEE
Q 042806 152 DYEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKL-------------------FDQVIFV 211 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~-------------------f~~~~wv 211 (390)
....++|.+..+..|..++..++. ..+.++|+.|+||||+|+.+......... |...+++
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 345788999999999999887665 45789999999999999999887632110 1112222
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc--ccccccCCCCCCCCCcEEEEEe
Q 042806 212 EVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL--DFQAVGIPHGDDRKGCKVLLTA 289 (390)
Q Consensus 212 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~IivTt 289 (390)
..+......+ ++.+........ ..+++-++|+|+++... ..+.+...+-.-...+.+|++|
T Consensus 94 ~~~~~~~vd~-ir~l~~~~~~~p----------------~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 94 DAASNTQVDA-MRELLDNAQYAP----------------TRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred eccccCCHHH-HHHHHHHHhhCc----------------ccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 2221111111 112222111100 01334699999997553 3444444443333456666655
Q ss_pred cc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChH-HHHHH
Q 042806 290 RS-LDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPV-SIVTV 353 (390)
Q Consensus 290 r~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPL-ai~~l 353 (390)
.+ ..+......-...+++++++.++..+.+.+.+....... .+.....|++.++|.+- ++..+
T Consensus 157 ~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~-~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 157 TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF-DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 44 333211122236899999999999988888764221212 23456789999999775 44444
No 63
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=1.4e-06 Score=90.76 Aligned_cols=177 Identities=14% Similarity=0.119 Sum_probs=108.2
Q ss_pred cccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC---------------------eEEE
Q 042806 153 YEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKLFD---------------------QVIF 210 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~---------------------~~~w 210 (390)
...++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+.+.+.-..... .+++
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~e 93 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTE 93 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEE
Confidence 45789999999999999987665 4688999999999999999988874211110 0112
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHH----hCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcE
Q 042806 211 VEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRL----KKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCK 284 (390)
Q Consensus 211 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ 284 (390)
+.......++ .+..+.+.+ ..++.-++|||+++.. ..++.|...+-.-...+.
T Consensus 94 idaas~~~Vd---------------------~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~ 152 (824)
T PRK07764 94 IDAASHGGVD---------------------DARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLK 152 (824)
T ss_pred ecccccCCHH---------------------HHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeE
Confidence 2111111111 122222221 1123358899999755 344555545544345566
Q ss_pred EEEEecc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHH
Q 042806 285 VLLTARS-LDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIV 351 (390)
Q Consensus 285 IivTtr~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~ 351 (390)
+|++|.+ ..+......-...|++.+++.++..+++.+.+....... ..+....|++.++|.+..+.
T Consensus 153 fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 153 FIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred EEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 6655543 444333344457899999999999988888764222212 23456789999999884443
No 64
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.59 E-value=1.1e-06 Score=86.13 Aligned_cols=168 Identities=14% Similarity=0.074 Sum_probs=105.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKT 255 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 255 (390)
..+.|+|+.|+|||+|++.+.+.......-..++++ +..++...+...++... .....+.+.+..-
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~------~~~~~~~~~~~~~-- 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH------KEIEQFKNEICQN-- 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh------hHHHHHHHHhccC--
Confidence 458899999999999999999976543212234443 34567777766664210 2233444444432
Q ss_pred EEEEEeCCCCCc---cc-ccccCCCCC-CCCCcEEEEEecch--hhh------hhcCCCcceEecCCCCHHHHHHHHHHh
Q 042806 256 ILVILDNIWGNL---DF-QAVGIPHGD-DRKGCKVLLTARSL--DVL------SRKMDSQQNFSVGVLKEDEAWSLFKKM 322 (390)
Q Consensus 256 ~LlVlDdv~~~~---~~-~~l~~~l~~-~~~~s~IivTtr~~--~v~------~~~~~~~~~~~l~~L~~~ea~~lf~~~ 322 (390)
-+||+||+.... .+ +.+...+.. ...+..||+|+... ... ...+..+-.+.+++++.++-.+++.+.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 489999997542 12 223222211 12345688887632 110 113445678899999999999999998
Q ss_pred hCCCCC-CCchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042806 323 AGDYIE-GSEFKWVAKDVARECAGLPVSIVTVARAL 357 (390)
Q Consensus 323 ~~~~~~-~~~~~~~~~~i~~~~~GlPLai~~l~~~L 357 (390)
+..... ..-.+++...|++.++|.|-.+.-+..-+
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 852211 12235688999999999998887765333
No 65
>PRK05642 DNA replication initiation factor; Validated
Probab=98.59 E-value=1.3e-06 Score=78.23 Aligned_cols=155 Identities=13% Similarity=0.153 Sum_probs=95.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEK 254 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 254 (390)
...+.|+|+.|+|||+|++.+++....+ -..++|++.. ++... ...+.+.+.+-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~------~~~~~-----------------~~~~~~~~~~~d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLA------ELLDR-----------------GPELLDNLEQYE 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHH------HHHhh-----------------hHHHHHhhhhCC
Confidence 3578899999999999999999876543 2345666543 22211 012334444333
Q ss_pred eEEEEEeCCCCC---ccccc-ccCCCCC-CCCCcEEEEEecchhhhh--------hcCCCcceEecCCCCHHHHHHHHHH
Q 042806 255 TILVILDNIWGN---LDFQA-VGIPHGD-DRKGCKVLLTARSLDVLS--------RKMDSQQNFSVGVLKEDEAWSLFKK 321 (390)
Q Consensus 255 ~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~~s~IivTtr~~~v~~--------~~~~~~~~~~l~~L~~~ea~~lf~~ 321 (390)
+|++||+... ..|+. +...+.. ...|..+|+|++...... .....+..+++++++.++-.++++.
T Consensus 100 --~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 100 --LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred --EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 7889999633 34433 3332211 234567888887422110 1223456899999999999999986
Q ss_pred hhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042806 322 MAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARAL 357 (390)
Q Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L 357 (390)
.+...... --+++...|++.+.|-.-.+..+-..|
T Consensus 178 ka~~~~~~-l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGLH-LTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCCC-CCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 66422111 125688899999998877666655444
No 66
>PF14516 AAA_35: AAA-like domain
Probab=98.58 E-value=5.7e-06 Score=78.02 Aligned_cols=200 Identities=12% Similarity=0.134 Sum_probs=120.4
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-----CCHHHHHHH--
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI-----QDIRKIQGE-- 225 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-----~~~~~l~~~-- 225 (390)
.+.++.|...-.++.+.+.++ ...+.|.|+..+|||||...+.+..... .|. .+++++... .+.+.+++.
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHHHHHHHH
Confidence 456789986667777777653 4688999999999999999999988764 354 457777542 245555544
Q ss_pred --HHHHhCCCCCCC--------CchHHHHHHHHHH-h-CCCeEEEEEeCCCCCccc----ccccCCCC----C---C-CC
Q 042806 226 --IADKLGLTLHEE--------SDSGRARSLRNRL-K-KEKTILVILDNIWGNLDF----QAVGIPHG----D---D-RK 281 (390)
Q Consensus 226 --i~~~l~~~~~~~--------~~~~~~~~l~~~l-~-~~~~~LlVlDdv~~~~~~----~~l~~~l~----~---~-~~ 281 (390)
+.++++....-. +......-+.+.+ . ..++.+|+||+++..... +++...+. . . ..
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 455555432110 1122222333333 2 246699999999744221 11111000 0 0 01
Q ss_pred Cc-EEEEEecc-hhh----hhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042806 282 GC-KVLLTARS-LDV----LSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVAR 355 (390)
Q Consensus 282 ~s-~IivTtr~-~~v----~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~ 355 (390)
.. ++++.... ... ....+..+..++|.+|+.+|...|+..+-.. .. ....+.|...+||+|.-+..++.
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~-~~~~~~l~~~tgGhP~Lv~~~~~ 241 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FS-QEQLEQLMDWTGGHPYLVQKACY 241 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CC-HHHHHHHHHHHCCCHHHHHHHHH
Confidence 11 22222211 111 1113344568999999999999998876422 11 22378999999999999999999
Q ss_pred HhcCC
Q 042806 356 ALGTR 360 (390)
Q Consensus 356 ~L~~~ 360 (390)
.+..+
T Consensus 242 ~l~~~ 246 (331)
T PF14516_consen 242 LLVEE 246 (331)
T ss_pred HHHHc
Confidence 99764
No 67
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.57 E-value=8.3e-07 Score=84.99 Aligned_cols=173 Identities=18% Similarity=0.228 Sum_probs=101.3
Q ss_pred cccccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 153 YEACESRMSTLNDILDALKN-------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
...+.|++..+++|.+.+.. ..++-+.|+|++|+|||++|+.+++..... | +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecch----
Confidence 45688999988888876532 124568899999999999999999977532 2 22221
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc----------------ccccccCCCC--CCCC
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL----------------DFQAVGIPHG--DDRK 281 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------------~~~~l~~~l~--~~~~ 281 (390)
.++.... ++ ........+.+......+.+|+||+++... .+..+...+. ....
T Consensus 190 ~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 190 SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 1121110 11 111223344444444556899999996431 0111111111 1234
Q ss_pred CcEEEEEecchhhhh-hcC---CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCh
Q 042806 282 GCKVLLTARSLDVLS-RKM---DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLP 347 (390)
Q Consensus 282 ~s~IivTtr~~~v~~-~~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 347 (390)
+..||.||....... ... .....+++...+.++..++|+.++.......+. -...+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 677888887543211 111 224578999999999999999887532222211 1357888887765
No 68
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.6e-06 Score=86.85 Aligned_cols=198 Identities=14% Similarity=0.107 Sum_probs=111.1
Q ss_pred cccccchhHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 042806 153 YEACESRMSTLNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLG 231 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~ 231 (390)
...++|.+..+..|...+..++ ...+.++|+.|+||||+|+.+.+...-....+.. .+..=...+.+...-.
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~-------pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE-------PCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC-------CCcccHHHHHHhcCCC
Confidence 4567888888888888887766 5778899999999999999999887432111000 0000001111110000
Q ss_pred CCC-----CCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecc-hhhhhhcC
Q 042806 232 LTL-----HEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARS-LDVLSRKM 299 (390)
Q Consensus 232 ~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~-~~v~~~~~ 299 (390)
.+. ........+..+.+.+. .+++-++|+|+++.. ...+.|...+..-.....+|++|.. ..+.....
T Consensus 88 pDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~ 167 (624)
T PRK14959 88 VDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIV 167 (624)
T ss_pred CceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHH
Confidence 000 00000111222222221 223369999999755 3344454444222334556665544 44432222
Q ss_pred CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCh-HHHHHHHHHhc
Q 042806 300 DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLP-VSIVTVARALG 358 (390)
Q Consensus 300 ~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP-Lai~~l~~~L~ 358 (390)
.-...+++++++.++....+...+....... .++.+..|++.++|.+ .|+..+..++.
T Consensus 168 SRcq~i~F~pLs~~eL~~~L~~il~~egi~i-d~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 168 SRCQHFTFTRLSEAGLEAHLTKVLGREGVDY-DPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred hhhhccccCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3345889999999999999988765222111 2446778999999954 67777765553
No 69
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.56 E-value=9.2e-07 Score=81.00 Aligned_cols=173 Identities=15% Similarity=0.147 Sum_probs=105.4
Q ss_pred cccchhHHH---HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 042806 155 ACESRMSTL---NDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLG 231 (390)
Q Consensus 155 ~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~ 231 (390)
++||.+..+ ..|...+..+..+.+.+||++|+||||||+.+.+..+... ..||..|....-..-++.|+.+-.
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq 214 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ 214 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH
Confidence 455544332 2334445567788888999999999999999999876542 567777765433222333332211
Q ss_pred CCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC-cccccccCCCCCCCCCcEEEE--Eecchhhh--hhcCCCcceEe
Q 042806 232 LTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN-LDFQAVGIPHGDDRKGCKVLL--TARSLDVL--SRKMDSQQNFS 306 (390)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~-~~~~~l~~~l~~~~~~s~Iiv--Ttr~~~v~--~~~~~~~~~~~ 306 (390)
......+|+-+|.+|.|+.. ...+++ .+|...+|.-++| ||.+.+.- .....-..++-
T Consensus 215 ---------------~~~~l~krkTilFiDEiHRFNksQQD~--fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~Vfv 277 (554)
T KOG2028|consen 215 ---------------NEKSLTKRKTILFIDEIHRFNKSQQDT--FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFV 277 (554)
T ss_pred ---------------HHHhhhcceeEEEeHHhhhhhhhhhhc--ccceeccCceEEEecccCCCccchhHHHHhccceeE
Confidence 01112356689999999744 222333 2445667775554 66654331 11234456899
Q ss_pred cCCCCHHHHHHHHHHhh---C------CCCCCC---chHHHHHHHHHHcCCChH
Q 042806 307 VGVLKEDEAWSLFKKMA---G------DYIEGS---EFKWVAKDVARECAGLPV 348 (390)
Q Consensus 307 l~~L~~~ea~~lf~~~~---~------~~~~~~---~~~~~~~~i~~~~~GlPL 348 (390)
|++|..++-..++.+.. + ...+.+ -...+.+.++..|+|-.-
T Consensus 278 LekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 278 LEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred eccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 99999999999998733 1 112221 224578888999988654
No 70
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=3.6e-06 Score=85.37 Aligned_cols=197 Identities=14% Similarity=0.120 Sum_probs=112.3
Q ss_pred cccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 042806 153 YEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLG 231 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~ 231 (390)
...++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+.+......... - ...+..-...+.+....+
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~--~----~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP--K----GRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--C----CCCCccCHHHHHHhcCCC
Confidence 45789999999999888887654 5678999999999999999998764211100 0 001111122223322111
Q ss_pred CCC-----CCCCchHHHHHHHHHHhC----CCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecc-hhhhhhcC
Q 042806 232 LTL-----HEESDSGRARSLRNRLKK----EKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARS-LDVLSRKM 299 (390)
Q Consensus 232 ~~~-----~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~-~~v~~~~~ 299 (390)
.+. ......+.+..+.+.+.. .++-++|+|+++.. ...+.|...+......+.+|+++.+ ..+.....
T Consensus 89 ~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred CeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence 110 000111122233332221 23369999999754 3344454444333345666666543 33322222
Q ss_pred CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHH
Q 042806 300 DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARA 356 (390)
Q Consensus 300 ~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~ 356 (390)
.-...+++.+++.++....+...+.......+ ++.+..|++.++|.+..+...-..
T Consensus 169 SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~-~eal~~La~~s~Gdlr~al~~Lek 224 (585)
T PRK14950 169 SRCQRFDFHRHSVADMAAHLRKIAAAEGINLE-PGALEAIARAATGSMRDAENLLQQ 224 (585)
T ss_pred hccceeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33468889999999998888887752222121 356789999999999765554433
No 71
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=2.5e-06 Score=85.95 Aligned_cols=198 Identities=13% Similarity=0.096 Sum_probs=113.2
Q ss_pred CcccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC--eEEEEEeCCCCCHHHHHHHHHH
Q 042806 152 DYEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKLFD--QVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~--~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
....++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+.+......... ...+-.+..+ .-.+.|..
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~i~~ 97 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQAIME 97 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHHHhc
Confidence 356789999999999999987764 4688999999999999999998764321110 0000001111 01111111
Q ss_pred HhCCC-----CCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCCc--ccccccCCCCCCCCCcEEEEEe-cchhhhh
Q 042806 229 KLGLT-----LHEESDSGRARSLRNRLK----KEKTILVILDNIWGNL--DFQAVGIPHGDDRKGCKVLLTA-RSLDVLS 296 (390)
Q Consensus 229 ~l~~~-----~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~IivTt-r~~~v~~ 296 (390)
.-..+ .......+.+..+.+.+. ..++-++|+|+++... ..+.+...+-.-.+++.+|++| ....+..
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 11000 000011112233333332 1233589999997553 3444444443334456666555 3344433
Q ss_pred hcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042806 297 RKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 297 ~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
....-...+++.+++.++....+.+.+....... .++....|++.++|.+.-+....
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-EDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2233446899999999999999988774222111 13567889999999997766554
No 72
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.52 E-value=3.4e-07 Score=86.01 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=61.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCCchHH------HHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ--DIRKIQGEIADKLGLTLHEESDSGR------ARS 245 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~--~~~~l~~~i~~~l~~~~~~~~~~~~------~~~ 245 (390)
...-..|+|++|+|||||++.+++..... +|++.+||.+.+.. ...++++.+...+-....+.+.... +..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 44567899999999999999999998765 89999999998887 6777777776322212122221111 112
Q ss_pred HHHHH-hCCCeEEEEEeCCC
Q 042806 246 LRNRL-KKEKTILVILDNIW 264 (390)
Q Consensus 246 l~~~l-~~~~~~LlVlDdv~ 264 (390)
..+++ ..++.+||++|++.
T Consensus 247 ~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHcCCCEEEEEEChH
Confidence 22222 34566999999996
No 73
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=4.7e-06 Score=83.59 Aligned_cols=199 Identities=15% Similarity=0.116 Sum_probs=111.0
Q ss_pred CcccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042806 152 DYEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL 230 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l 230 (390)
....++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+.....-....+ +-.++.+. ..+.+...-
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C~----~C~~i~~~~ 83 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVCE----SCVALAPNG 83 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCcccccH----HHHHhhccc
Confidence 355789999999999999988764 4578999999999999999998764211110 00001000 011110000
Q ss_pred C-------CCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEe-cchhhhh
Q 042806 231 G-------LTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTA-RSLDVLS 296 (390)
Q Consensus 231 ~-------~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTt-r~~~v~~ 296 (390)
+ .+.......+.+..+.+.+. ..+.-++|+|+++.. ...+.|...+..-...+.+|++| ....+..
T Consensus 84 ~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 84 PGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHH
Confidence 0 00000001111222222221 123358999999754 34555544443334455555544 4444433
Q ss_pred hcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChH-HHHHHHHHhc
Q 042806 297 RKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPV-SIVTVARALG 358 (390)
Q Consensus 297 ~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPL-ai~~l~~~L~ 358 (390)
....-...+++.+++.++..+.+.+.+.......+ ++....|++.++|-+- ++..+-.++.
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~-~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD-DAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 23333568999999999999888887652222121 3456788999999774 5555444443
No 74
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=7.1e-06 Score=80.98 Aligned_cols=180 Identities=16% Similarity=0.132 Sum_probs=106.6
Q ss_pred cccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------CCCeEEEEE
Q 042806 153 YEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEK-------------------LFDQVIFVE 212 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~ 212 (390)
...++|.+..+..|.+++..++. +.+.++|+.|+||||+|+.++....... .|....++.
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 45688999999999999987664 4567899999999999999988753110 011112221
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEE
Q 042806 213 VSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVL 286 (390)
Q Consensus 213 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~Ii 286 (390)
.+..... ..+..+.+.+. .+++-++|+|+++.. ...+.+...+..-.+...+|
T Consensus 95 aas~~gv---------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 95 AASNRGI---------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred CccCCCH---------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 1111111 11222332221 123369999999754 23444443343333345555
Q ss_pred EEe-cchhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042806 287 LTA-RSLDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 287 vTt-r~~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
++| +...+..........+++.+++.++....+...+....... ..+.+..|++.++|.+..+..+.
T Consensus 154 l~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i-d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 154 LCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY-EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 555 33333222222345899999999999988888764222111 23456789999999776555554
No 75
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.50 E-value=1.8e-06 Score=83.21 Aligned_cols=173 Identities=17% Similarity=0.254 Sum_probs=100.0
Q ss_pred cccccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 153 YEACESRMSTLNDILDALKN-------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
...+.|++..++++.+.+.. ..++-|.++|++|+|||++|+.+++..... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh----
Confidence 45688999888888776531 235668899999999999999999876421 222221
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc------------c-cccccC---CCC--CCCC
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL------------D-FQAVGI---PHG--DDRK 281 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~-~~~l~~---~l~--~~~~ 281 (390)
.++.... .+ .....+..+.+......+.+|+||+++... . ...+.. .+. ....
T Consensus 199 ~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 199 SELVQKF---IG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHHhHhh---cc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 1221110 01 112233444444444556899999997431 0 011111 111 1123
Q ss_pred CcEEEEEecchhhhhh-cC---CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCh
Q 042806 282 GCKVLLTARSLDVLSR-KM---DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLP 347 (390)
Q Consensus 282 ~s~IivTtr~~~v~~~-~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 347 (390)
+..||.||........ .. .....+++.+.+.++-.++|+.++.......+. ....+++.+.|.-
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~s 337 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGAS 337 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCCC
Confidence 5677777775432211 11 123579999999999999999887532222211 1346777777654
No 76
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.48 E-value=2e-06 Score=80.75 Aligned_cols=176 Identities=17% Similarity=0.133 Sum_probs=96.6
Q ss_pred ccCcccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042806 150 IKDYEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
|.....++|.+...+.+..++..++. .++.++|++|+||||+++.+++..... ..+++.+. .... ..+..+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~-----~~~i~~~~-~~~~-~i~~~l~ 89 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAE-----VLFVNGSD-CRID-FVRNRLT 89 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCcc-----ceEeccCc-ccHH-HHHHHHH
Confidence 34456789999999999999887654 567779999999999999998876321 23444443 2221 1111111
Q ss_pred HhCCCCCCCCchHHHHHHHHHHh-CCCeEEEEEeCCCCC--ccc-ccccCCCCCCCCCcEEEEEecchhh-hhhcCCCcc
Q 042806 229 KLGLTLHEESDSGRARSLRNRLK-KEKTILVILDNIWGN--LDF-QAVGIPHGDDRKGCKVLLTARSLDV-LSRKMDSQQ 303 (390)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~--~~~-~~l~~~l~~~~~~s~IivTtr~~~v-~~~~~~~~~ 303 (390)
.+ ..... .+.+-++|+|+++.. ... ..+...+.....++++|+||..... .........
T Consensus 90 ~~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 90 RF----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HH----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 11 00000 012368999999754 111 2232223223456788888875321 111122234
Q ss_pred eEecCCCCHHHHHHHHHHhhC------CCCCCCchHHHHHHHHHHcCCChH
Q 042806 304 NFSVGVLKEDEAWSLFKKMAG------DYIEGSEFKWVAKDVARECAGLPV 348 (390)
Q Consensus 304 ~~~l~~L~~~ea~~lf~~~~~------~~~~~~~~~~~~~~i~~~~~GlPL 348 (390)
.+.+...+.++..+++..... .....+-.++....+++..+|---
T Consensus 154 ~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r 204 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFR 204 (316)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHH
Confidence 677878888887766543221 011111123345667776665433
No 77
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=7.2e-06 Score=81.16 Aligned_cols=185 Identities=16% Similarity=0.131 Sum_probs=109.1
Q ss_pred CcccccchhHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCC-------------------eEEEE
Q 042806 152 DYEACESRMSTLNDILDALKNPDVN-MLGIYGMGGIVKTTLAKEVARKAETEKLFD-------------------QVIFV 211 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~-------------------~~~wv 211 (390)
....++|-+.....|...+..++.+ ++.++|+.|+||||+|+.+.+..-.....+ ..+.+
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 3557899888889999988877654 678999999999999999988763211110 11122
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEe
Q 042806 212 EVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTA 289 (390)
Q Consensus 212 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTt 289 (390)
..+......++. ++.......+ ..++.-++|+|+++.. ...+.+...+-.-.+.+++|++|
T Consensus 92 daas~~gId~IR-elie~~~~~P----------------~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 92 DAASNRGIDDIR-ELIEQTKYKP----------------SMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred ccccccCHHHHH-HHHHHHhhCc----------------ccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 111111121111 1111110000 0123359999999755 33444443443334456666666
Q ss_pred cch-hhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042806 290 RSL-DVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 290 r~~-~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
.+. .+......-...+++.+++.++....+.+.+....... .++.+..|++.++|.+--+..+.
T Consensus 155 td~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 155 TDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred CChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHHH
Confidence 552 32222223346999999999999999888775222222 24567889999999986555543
No 78
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.47 E-value=2.1e-06 Score=90.36 Aligned_cols=179 Identities=12% Similarity=0.099 Sum_probs=99.6
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCeEEE-EEeCCCCCHHHHHHHHH
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKL----FDQVIF-VEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----f~~~~w-v~v~~~~~~~~l~~~i~ 227 (390)
.++++||+.++.++++.|......-+.++|++|+||||+|+.+++....... .+..+| +..+.-..
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a--------- 256 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA--------- 256 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc---------
Confidence 5689999999999999988776667779999999999999999998643211 122222 22221000
Q ss_pred HHhCCCCCCCCchHHHHHHHHHHh-CCCeEEEEEeCCCCCc------cccc---ccCCCCCCCCCcEEEEEecchhhhh-
Q 042806 228 DKLGLTLHEESDSGRARSLRNRLK-KEKTILVILDNIWGNL------DFQA---VGIPHGDDRKGCKVLLTARSLDVLS- 296 (390)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~~------~~~~---l~~~l~~~~~~s~IivTtr~~~v~~- 296 (390)
.......-...+..+.+.+. .+.+.+|++|+++... .-.+ +..+... ....++|-||.......
T Consensus 257 ----g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~-~G~l~~IgaTT~~e~~~~ 331 (852)
T TIGR03345 257 ----GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA-RGELRTIAATTWAEYKKY 331 (852)
T ss_pred ----ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh-CCCeEEEEecCHHHHhhh
Confidence 00000001112223333332 2345999999997542 1111 2222212 22356666666532210
Q ss_pred -----hcCCCcceEecCCCCHHHHHHHHHHhhC---CCCCCCchHHHHHHHHHHcCC
Q 042806 297 -----RKMDSQQNFSVGVLKEDEAWSLFKKMAG---DYIEGSEFKWVAKDVARECAG 345 (390)
Q Consensus 297 -----~~~~~~~~~~l~~L~~~ea~~lf~~~~~---~~~~~~~~~~~~~~i~~~~~G 345 (390)
....-...+.+.+++.++..++++.... ....-.-.++....+++.+.+
T Consensus 332 ~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 332 FEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred hhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 0111235899999999999999765442 111111123455566666654
No 79
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.46 E-value=1.8e-06 Score=89.93 Aligned_cols=157 Identities=16% Similarity=0.190 Sum_probs=91.3
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCC---C-CeEEEEEeCCCCCHHHHHHHHHH
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKL---F-DQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~---f-~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
.++++||+.++..+++.|......-+.++|++|+|||++++.+++....... + +..+|. + +...+...
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a~--- 252 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLAG--- 252 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhhh---
Confidence 4689999999999999988766666789999999999999999998743221 1 233331 1 11111110
Q ss_pred HhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc----------cccc-ccCCCCCCCCCcEEEEEecchhhh--
Q 042806 229 KLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL----------DFQA-VGIPHGDDRKGCKVLLTARSLDVL-- 295 (390)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------~~~~-l~~~l~~~~~~s~IivTtr~~~v~-- 295 (390)
..........+..+.+.+....+.+|++|+++... +... +...+ . ....++|-+|...+..
T Consensus 253 ----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l-~-~g~i~~IgaTt~~e~~~~ 326 (731)
T TIGR02639 253 ----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL-S-SGKLRCIGSTTYEEYKNH 326 (731)
T ss_pred ----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH-h-CCCeEEEEecCHHHHHHH
Confidence 00000112233444444443345899999997331 1112 22222 2 2234555555532210
Q ss_pred ----hhcCCCcceEecCCCCHHHHHHHHHHhh
Q 042806 296 ----SRKMDSQQNFSVGVLKEDEAWSLFKKMA 323 (390)
Q Consensus 296 ----~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 323 (390)
.....-...+++.+++.++..++++...
T Consensus 327 ~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 327 FEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 0011122479999999999999998655
No 80
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=7.5e-06 Score=82.75 Aligned_cols=197 Identities=14% Similarity=0.149 Sum_probs=108.6
Q ss_pred cccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE-----EeCCCCCHHHHHHHH
Q 042806 153 YEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFV-----EVSKIQDIRKIQGEI 226 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv-----~v~~~~~~~~l~~~i 226 (390)
...++|.+..+..|..++..++. ..+.++|+.|+||||+|+.+.+...-....+...|. .++.+ ...+.+
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C----~sC~~~ 90 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC----ESCRDF 90 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC----HHHHHH
Confidence 45788999999999998887665 458899999999999999999886432111100111 11111 011111
Q ss_pred HHHhCCC-----CCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCCc--ccccccCCCCCCCCCcEEEEEe-cchhh
Q 042806 227 ADKLGLT-----LHEESDSGRARSLRNRLK----KEKTILVILDNIWGNL--DFQAVGIPHGDDRKGCKVLLTA-RSLDV 294 (390)
Q Consensus 227 ~~~l~~~-----~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~IivTt-r~~~v 294 (390)
...-..+ .......+.+..+.+.+. .+++-++|+|+++... ..+.|...+-.-...+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 0000000 000011122223333331 1223588999987553 3444444443323345555444 43444
Q ss_pred hhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChH-HHHHHH
Q 042806 295 LSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPV-SIVTVA 354 (390)
Q Consensus 295 ~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPL-ai~~l~ 354 (390)
..........+++.+++.++....+...+....... ..+.+..|++.++|..- ++..+-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I-~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI-DADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 332334457899999999999888887664211111 13467889999999555 444443
No 81
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=8.3e-06 Score=83.02 Aligned_cols=187 Identities=17% Similarity=0.152 Sum_probs=106.1
Q ss_pred cccccchhHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 042806 153 YEACESRMSTLNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLG 231 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~ 231 (390)
...++|.+..+..|..++..++ .+.+.++|+.|+||||+|+.++...-.....+ .+-.+..+ .. ..+
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~C-------~~---~~~ 84 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQEC-------IE---NVN 84 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhHH-------HH---hhc
Confidence 4578899998999999998766 45678999999999999999988753211000 00000000 00 000
Q ss_pred CCCC-------CCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEE-EEecchhhhhh
Q 042806 232 LTLH-------EESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVL-LTARSLDVLSR 297 (390)
Q Consensus 232 ~~~~-------~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~Ii-vTtr~~~v~~~ 297 (390)
...+ .......+..+.+.+. .+++-++|+|+++.. ..+..+...+-.-...+.+| +|+....+...
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0000 0000112233333332 133359999999754 34555544332323344444 55444554433
Q ss_pred cCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHH
Q 042806 298 KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVT 352 (390)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~ 352 (390)
...-...+++.+++.++....+...+.......+ .+.+..|++.++|-+--+..
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id-~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENISYE-KNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 3333468999999999999888876642212121 34577899999997654433
No 82
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.42 E-value=1.7e-06 Score=78.94 Aligned_cols=135 Identities=17% Similarity=0.208 Sum_probs=71.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKE 253 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (390)
...-+.++|++|+||||+|+.+++.....+......++.++. .++... ..+ . ....+.+.+...
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~----~~l~~~---~~g------~---~~~~~~~~~~~a 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER----ADLVGE---YIG------H---TAQKTREVIKKA 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----HHhhhh---hcc------c---hHHHHHHHHHhc
Confidence 345678999999999999999988753322111122333322 122111 001 0 111222333222
Q ss_pred CeEEEEEeCCCCCc----------ccccccCCCCCCCCCcEEEEEecchhhh------hh-cCCCcceEecCCCCHHHHH
Q 042806 254 KTILVILDNIWGNL----------DFQAVGIPHGDDRKGCKVLLTARSLDVL------SR-KMDSQQNFSVGVLKEDEAW 316 (390)
Q Consensus 254 ~~~LlVlDdv~~~~----------~~~~l~~~l~~~~~~s~IivTtr~~~v~------~~-~~~~~~~~~l~~L~~~ea~ 316 (390)
...+|++|+++... ..+.+...+........+|+++...... +. .......+++++++.++-.
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 23589999997531 2223333332333334566665443220 00 1112347899999999999
Q ss_pred HHHHHhhC
Q 042806 317 SLFKKMAG 324 (390)
Q Consensus 317 ~lf~~~~~ 324 (390)
+++.+.+.
T Consensus 185 ~Il~~~~~ 192 (261)
T TIGR02881 185 EIAERMVK 192 (261)
T ss_pred HHHHHHHH
Confidence 99988875
No 83
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=1.2e-05 Score=81.52 Aligned_cols=182 Identities=13% Similarity=0.155 Sum_probs=109.9
Q ss_pred cccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhh---------------------cCCCCeEEE
Q 042806 153 YEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAET---------------------EKLFDQVIF 210 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~---------------------~~~f~~~~w 210 (390)
...++|.+...+.|..++..++. ..+.++|+.|+||||+|+.+...... ..+|+. ..
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ 94 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HE 94 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EE
Confidence 45789999999999999988765 45889999999999999998887531 112332 22
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEE
Q 042806 211 VEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLT 288 (390)
Q Consensus 211 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivT 288 (390)
+..+......++ +.+...+..... .+++=++|+|+++.. ..++.+...+..-..++.+|++
T Consensus 95 ld~~~~~~vd~I-r~li~~~~~~P~----------------~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~ 157 (614)
T PRK14971 95 LDAASNNSVDDI-RNLIEQVRIPPQ----------------IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILA 157 (614)
T ss_pred ecccccCCHHHH-HHHHHHHhhCcc----------------cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 222222222222 122222211100 112248899998755 3355554444333345565554
Q ss_pred e-cchhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 289 A-RSLDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 289 t-r~~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
| ....+......-...+++.+++.++....+...+.......+ .+.+..|++.++|-.--+..+
T Consensus 158 tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~-~~al~~La~~s~gdlr~al~~ 222 (614)
T PRK14971 158 TTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE-PEALNVIAQKADGGMRDALSI 222 (614)
T ss_pred eCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 4 444443333344568999999999999999887752222221 345788999999977544443
No 84
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=3e-05 Score=73.66 Aligned_cols=204 Identities=11% Similarity=0.109 Sum_probs=125.7
Q ss_pred cCcccccchhHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 042806 151 KDYEACESRMSTLNDILDALKN----PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEI 226 (390)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i 226 (390)
.++...+||+.++..+.+++.. +....+-|.|-+|.|||.+...++.+......--.++++++..-.....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 3466789999999999888764 456788899999999999999999987653212246888887767788888888
Q ss_pred HHHh-CCCCCCCCchHHHHHHHHHHhC-CCeEEEEEeCCCCCc--ccccccC-CCCCCCCCcEEEEEecchhh------h
Q 042806 227 ADKL-GLTLHEESDSGRARSLRNRLKK-EKTILVILDNIWGNL--DFQAVGI-PHGDDRKGCKVLLTARSLDV------L 295 (390)
Q Consensus 227 ~~~l-~~~~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~--~~~~l~~-~l~~~~~~s~IivTtr~~~v------~ 295 (390)
...+ ..........+....+...... +..+|+|+|.++... .-..+.. .....-+++++|+..--..+ .
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 8877 2111111224455566666654 447999999986431 1111111 01112345555544332111 1
Q ss_pred hh----cCCCcceEecCCCCHHHHHHHHHHhhCCCCCC----CchHHHHHHHHHHcCCChHHHHHHH
Q 042806 296 SR----KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEG----SEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 296 ~~----~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~----~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
.. ..-....+...|.+.++..++|.......... ..++-+|++++...|.+--|+...-
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 11 12234688899999999999999887532222 2334445555555555555554443
No 85
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.41 E-value=4.5e-06 Score=80.49 Aligned_cols=194 Identities=18% Similarity=0.160 Sum_probs=112.9
Q ss_pred cchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC
Q 042806 157 ESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ-DIRKIQGEIADKLGLTLH 235 (390)
Q Consensus 157 ~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~ 235 (390)
..|..-+.++.+.+..... ++.|.|+.++||||+++.+....... .+++...... +..++ .+.
T Consensus 20 ~~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l-~d~--------- 83 (398)
T COG1373 20 IERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL-LDL--------- 83 (398)
T ss_pred hhHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH-HHH---------
Confidence 3444555666666554433 99999999999999997666554332 5555543322 11111 111
Q ss_pred CCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhhhh-----hcCCCcceEecCCC
Q 042806 236 EESDSGRARSLRNRLKKEKTILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDVLS-----RKMDSQQNFSVGVL 310 (390)
Q Consensus 236 ~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v~~-----~~~~~~~~~~l~~L 310 (390)
...+.+.-.. ++.+++||.|+...+|......+.+..+. +|++|+-+..... ...+-...+++.||
T Consensus 84 -------~~~~~~~~~~-~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~Pl 154 (398)
T COG1373 84 -------LRAYIELKER-EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPL 154 (398)
T ss_pred -------HHHHHHhhcc-CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCC
Confidence 1111111112 33899999999999999877777666666 8888888765432 22344569999999
Q ss_pred CHHHHHH-------------HHHHhhC-CCCC----CCc---------hHHHHHHHHHHcCC-ChHHHHHHHHHhcCCCC
Q 042806 311 KEDEAWS-------------LFKKMAG-DYIE----GSE---------FKWVAKDVARECAG-LPVSIVTVARALGTRDY 362 (390)
Q Consensus 311 ~~~ea~~-------------lf~~~~~-~~~~----~~~---------~~~~~~~i~~~~~G-lPLai~~l~~~L~~~~~ 362 (390)
|..|-.. +|..... +..+ ... ..-+.++|.+.++= -+-.+..+..++..+..
T Consensus 155 SF~Efl~~~~~~~~~~~~~~~f~~Yl~~GGfP~~v~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~k~i~~~l~~~~g 234 (398)
T COG1373 155 SFREFLKLKGEEIEPSKLELLFEKYLETGGFPESVKADLSEKKLKEYLDTILKRDIIERGKIENADLMKRILRFLASNIG 234 (398)
T ss_pred CHHHHHhhcccccchhHHHHHHHHHHHhCCCcHHHhCcchhhHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHhhcC
Confidence 9999865 4665542 1110 111 12234567777752 33444555554444332
Q ss_pred CCCcccchhHHHHHh
Q 042806 363 LNGRTHWNSWGGLLQ 377 (390)
Q Consensus 363 ~~~~~~w~~~~~~l~ 377 (390)
..--|.++...+.
T Consensus 235 --~~~s~~~la~~l~ 247 (398)
T COG1373 235 --SPISYSSLARELK 247 (398)
T ss_pred --CccCHHHHHHHHh
Confidence 2556666666663
No 86
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.41 E-value=1.1e-05 Score=73.29 Aligned_cols=192 Identities=16% Similarity=0.149 Sum_probs=115.4
Q ss_pred HHHHHHHHHhcCC---CccEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042806 161 STLNDILDALKNP---DVNMLGIYGMGGIVKTTLAKEVARKAETEKL----FDQVIFVEVSKIQDIRKIQGEIADKLGLT 233 (390)
Q Consensus 161 ~~~~~l~~~L~~~---~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~l~~~i~~~l~~~ 233 (390)
..++.|.+.+..+ ..+-+.|+|.+|.|||++++.+......... --.++.|.....++...++..|+..++.+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 3344455545443 4577999999999999999999987543211 11467788888999999999999999987
Q ss_pred CCCCC-chHHHHHHHHHHhCCCeEEEEEeCCCCCc---------ccccccCCCCCCCCCcEEEEEecchhhhhhc----C
Q 042806 234 LHEES-DSGRARSLRNRLKKEKTILVILDNIWGNL---------DFQAVGIPHGDDRKGCKVLLTARSLDVLSRK----M 299 (390)
Q Consensus 234 ~~~~~-~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---------~~~~l~~~l~~~~~~s~IivTtr~~~v~~~~----~ 299 (390)
..... ...........++.-+.=+||+|++++.. .++.++ .+.+.-.-+-|.+-|+....+-.. .
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 75443 33334445566665444699999997641 112221 121112233455555543222110 0
Q ss_pred CCcceEecCCCCH-HHHHHHHHHhh---C-CCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 300 DSQQNFSVGVLKE-DEAWSLFKKMA---G-DYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 300 ~~~~~~~l~~L~~-~ea~~lf~~~~---~-~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
+-...+.+.+-.. ++...|+...- . .....-...+++..|...++|+.=-+..+
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 1123555555443 34455554332 1 33333445778999999999998665554
No 87
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.39 E-value=7.1e-06 Score=79.78 Aligned_cols=160 Identities=14% Similarity=0.145 Sum_probs=95.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEK 254 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 254 (390)
...+.|+|++|+|||+|++.+++.......=..++|++ ..++...+...+... ....+.+.+..-
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~- 200 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN--------KMEEFKEKYRSV- 200 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC--------CHHHHHHHHHhC-
Confidence 34688999999999999999999876531112345554 334444555444321 123344445432
Q ss_pred eEEEEEeCCCCCcc---c-ccccCCCCC-CCCCcEEEEEecch--hhh------hhcCCCcceEecCCCCHHHHHHHHHH
Q 042806 255 TILVILDNIWGNLD---F-QAVGIPHGD-DRKGCKVLLTARSL--DVL------SRKMDSQQNFSVGVLKEDEAWSLFKK 321 (390)
Q Consensus 255 ~~LlVlDdv~~~~~---~-~~l~~~l~~-~~~~s~IivTtr~~--~v~------~~~~~~~~~~~l~~L~~~ea~~lf~~ 321 (390)
-+|+|||++.... + +.+...+.. ...+..+|+|+... .+. ...+..+..+++.+.+.++-..++.+
T Consensus 201 -dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 201 -DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred -CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 3899999975321 1 112221111 12345677777641 110 11233445899999999999999999
Q ss_pred hhCCCCCCCchHHHHHHHHHHcCCChHHHH
Q 042806 322 MAGDYIEGSEFKWVAKDVARECAGLPVSIV 351 (390)
Q Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~GlPLai~ 351 (390)
.+......- .+++...|++.+.|.+-.+.
T Consensus 280 ~~~~~~~~l-~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 280 KAEEEGLEL-PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHcCCCC-CHHHHHHHHHhcCCCHHHHH
Confidence 886322222 25677889999888766433
No 88
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.39 E-value=3.7e-07 Score=85.27 Aligned_cols=179 Identities=25% Similarity=0.295 Sum_probs=119.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFD-QVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKK 252 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (390)
..+.+.++|+|||||||++-++.. .... |. .+.++...+..+...+.-.+...++..... -......+...+.+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~--g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQP--GDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhccccccc--chHHHHHHHHHHhh
Confidence 467899999999999999999988 4433 65 566666666667766667777777765432 12234455555655
Q ss_pred CCeEEEEEeCCCCCcc-cccccCCCCCCCCCcEEEEEecchhhhhhcCCCcceEecCCCCHH-HHHHHHHHhhC----CC
Q 042806 253 EKTILVILDNIWGNLD-FQAVGIPHGDDRKGCKVLLTARSLDVLSRKMDSQQNFSVGVLKED-EAWSLFKKMAG----DY 326 (390)
Q Consensus 253 ~~~~LlVlDdv~~~~~-~~~l~~~l~~~~~~s~IivTtr~~~v~~~~~~~~~~~~l~~L~~~-ea~~lf~~~~~----~~ 326 (390)
. +.++|+||.....+ -..+...+..+.+.-.|+.|+|.... ........+.+|+.. ++.++|...+. .-
T Consensus 88 r-r~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 88 R-RALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred h-hHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 4 49999999865421 11122223334556678889987543 234456777777754 78888876663 11
Q ss_pred CCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCCC
Q 042806 327 IEGSEFKWVAKDVARECAGLPVSIVTVARALGTRDY 362 (390)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~~~~~ 362 (390)
...........+|.++.+|.||+|...++..++-..
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~ 198 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSP 198 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCH
Confidence 112223456789999999999999999998887665
No 89
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.38 E-value=4.9e-06 Score=87.76 Aligned_cols=180 Identities=14% Similarity=0.165 Sum_probs=100.5
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCC---C-CeEEEEEeCCCCCHHHHHHHHHH
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKL---F-DQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~---f-~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
.++++||+.+++.+++.|......-+.++|++|+|||++|..++........ . +..+|. + +...++.
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a---- 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA---- 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc----
Confidence 4679999999999999998766666779999999999999999988643211 1 233442 1 2222111
Q ss_pred HhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc---------ccccccCCCCCCCCCcEEEEEecchhhhh---
Q 042806 229 KLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL---------DFQAVGIPHGDDRKGCKVLLTARSLDVLS--- 296 (390)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---------~~~~l~~~l~~~~~~s~IivTtr~~~v~~--- 296 (390)
+ ......-...+..+.+.+...++++|++|+++... +...+..+... ....++|.+|.......
T Consensus 249 --g-~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg~l~~IgaTt~~ey~~~ie 324 (821)
T CHL00095 249 --G-TKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RGELQCIGATTLDEYRKHIE 324 (821)
T ss_pred --c-CCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CCCcEEEEeCCHHHHHHHHh
Confidence 1 11111122234444444444455999999996321 11112112111 22345666665543211
Q ss_pred ---hcCCCcceEecCCCCHHHHHHHHHHhhC---CCCCCCchHHHHHHHHHHcCC
Q 042806 297 ---RKMDSQQNFSVGVLKEDEAWSLFKKMAG---DYIEGSEFKWVAKDVARECAG 345 (390)
Q Consensus 297 ---~~~~~~~~~~l~~L~~~ea~~lf~~~~~---~~~~~~~~~~~~~~i~~~~~G 345 (390)
........+++...+.++...+++.... ......-.+++...+++.++|
T Consensus 325 ~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~ 379 (821)
T CHL00095 325 KDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ 379 (821)
T ss_pred cCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Confidence 1122335788999999999888875431 111111123455666666653
No 90
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=1.3e-05 Score=78.52 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=105.2
Q ss_pred cccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcC---------------------CCCeEEE
Q 042806 153 YEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEK---------------------LFDQVIF 210 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~---------------------~f~~~~w 210 (390)
...++|.+..+..|.+++..++. ..+.++|+.|+||||+|+.+.+...... +++ .++
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~ 94 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLE 94 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 55789999999999999987664 5688999999999999999988764211 111 111
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcE
Q 042806 211 VEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCK 284 (390)
Q Consensus 211 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ 284 (390)
+........++ +..+.+.+. ..++-++|+|+++.. ...+.+...+......+.
T Consensus 95 i~g~~~~gid~---------------------ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 95 IDGASHRGIED---------------------IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred eeccccCCHHH---------------------HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 11111111111 111222221 123368999998644 233344333333334556
Q ss_pred EEEEecc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChH-HHHHH
Q 042806 285 VLLTARS-LDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPV-SIVTV 353 (390)
Q Consensus 285 IivTtr~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPL-ai~~l 353 (390)
+|++|.. ..+..........+++.+++.++....+...+....... .++.+..|++.++|.+- |+..+
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i-~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET-SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666643 333222223345899999999999988887764221111 23467789999999764 44444
No 91
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.38 E-value=3.6e-06 Score=77.52 Aligned_cols=132 Identities=16% Similarity=0.128 Sum_probs=73.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeE
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTI 256 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 256 (390)
-+.++|++|+|||++|+.++......+......|+.++. .++...+ .+. .. . .+.+.+..-..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~~~~---~g~-----~~-~---~~~~~~~~a~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLVGQY---IGH-----TA-P---KTKEILKRAMGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHhHhh---ccc-----ch-H---HHHHHHHHccCc
Confidence 477999999999999988887765433222223554442 2222211 111 11 1 122222221226
Q ss_pred EEEEeCCCCC-----------cccccccCCCCCCCCCcEEEEEecchhhhhh-------cCCCcceEecCCCCHHHHHHH
Q 042806 257 LVILDNIWGN-----------LDFQAVGIPHGDDRKGCKVLLTARSLDVLSR-------KMDSQQNFSVGVLKEDEAWSL 318 (390)
Q Consensus 257 LlVlDdv~~~-----------~~~~~l~~~l~~~~~~s~IivTtr~~~v~~~-------~~~~~~~~~l~~L~~~ea~~l 318 (390)
+|+||++... ..++.+...+.....+.+||+++.....-.. .......+++.+++.+|..++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999999632 1122333333334456677777654322110 011235799999999999999
Q ss_pred HHHhhC
Q 042806 319 FKKMAG 324 (390)
Q Consensus 319 f~~~~~ 324 (390)
+.+.+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 988874
No 92
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.38 E-value=1e-05 Score=80.79 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=95.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKT 255 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 255 (390)
..+.|+|..|+|||.|++.+++.......-..++|+. ..++...+...+... ....+.+.+.+-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~--------~~~~f~~~y~~~-- 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG--------KGDSFRRRYREM-- 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc--------cHHHHHHHhhcC--
Confidence 4589999999999999999999875421112345543 344555554443211 123344444442
Q ss_pred EEEEEeCCCCC---ccccc-ccCCCCC-CCCCcEEEEEecch--hh------hhhcCCCcceEecCCCCHHHHHHHHHHh
Q 042806 256 ILVILDNIWGN---LDFQA-VGIPHGD-DRKGCKVLLTARSL--DV------LSRKMDSQQNFSVGVLKEDEAWSLFKKM 322 (390)
Q Consensus 256 ~LlVlDdv~~~---~~~~~-l~~~l~~-~~~~s~IivTtr~~--~v------~~~~~~~~~~~~l~~L~~~ea~~lf~~~ 322 (390)
=+|+|||+... ..|+. +...+.. ...+..||+||... .+ ....+..+-.++|.+.+.+.-..++++.
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 38999999754 22221 2222211 13355688888752 11 1124556679999999999999999988
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCChHHHH
Q 042806 323 AGDYIEGSEFKWVAKDVARECAGLPVSIV 351 (390)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~~~GlPLai~ 351 (390)
+....... -++++..|++.+.+..-.|.
T Consensus 459 a~~r~l~l-~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 459 AVQEQLNA-PPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHhcCCCC-CHHHHHHHHHhccCCHHHHH
Confidence 86332222 24577788888776544433
No 93
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1.9e-05 Score=80.12 Aligned_cols=197 Identities=14% Similarity=0.071 Sum_probs=109.9
Q ss_pred cccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 042806 153 YEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLG 231 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~ 231 (390)
...++|.+..+..|..++..++. +.+.++|+.|+||||+|+.++.......... ... ..+..-+..+.+.....
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~~----~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-PTP----EPCGKCELCRAIAAGNA 89 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-CCC----CCCcccHHHHHHhcCCC
Confidence 45688999999999998887653 6788999999999999999999874321110 000 00111122222221111
Q ss_pred CCC-----CCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecc-hhhhhhcC
Q 042806 232 LTL-----HEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARS-LDVLSRKM 299 (390)
Q Consensus 232 ~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~-~~v~~~~~ 299 (390)
.+. ........+..+.+.+. .+++-++|+|+++.. ..++.|...+-.-...+.+|++|.+ ..+.....
T Consensus 90 ~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH
Confidence 100 00011112222322221 123358999999754 3455554444333334555555543 33322223
Q ss_pred CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042806 300 DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVAR 355 (390)
Q Consensus 300 ~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~ 355 (390)
.-...+++.+++.++....+...+.......+ .+.+..|++.++|.+..+..+..
T Consensus 170 SRc~~~~f~~l~~~ei~~~L~~ia~kegi~is-~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 170 SRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE-PEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 33467888999999988888776642111111 34577899999998865555443
No 94
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=9.8e-06 Score=81.90 Aligned_cols=197 Identities=15% Similarity=0.142 Sum_probs=108.7
Q ss_pred CcccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042806 152 DYEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL 230 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l 230 (390)
....++|.+..+..|.+++..++. +.+.++|+.|+||||+|+.+.+.......... ..+..-.....|...-
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEGR 86 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcCC
Confidence 355789999999999999887765 56789999999999999999888642211100 0000000000100000
Q ss_pred CC-----CCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCCc--ccccccCCCCCCCCCcEEEEEe-cchhhhhhc
Q 042806 231 GL-----TLHEESDSGRARSLRNRLK----KEKTILVILDNIWGNL--DFQAVGIPHGDDRKGCKVLLTA-RSLDVLSRK 298 (390)
Q Consensus 231 ~~-----~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~IivTt-r~~~v~~~~ 298 (390)
.. +.......+.+..+.+.+. ..+.-++|+|+++... ..+.|...+-.-...+.+|++| ....+....
T Consensus 87 ~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 00 0000000111222333221 1233589999997542 3444444443333455555544 445454333
Q ss_pred CCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCh-HHHHHHHHH
Q 042806 299 MDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLP-VSIVTVARA 356 (390)
Q Consensus 299 ~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP-Lai~~l~~~ 356 (390)
..-...+++.+++.++....+...+.......+ ++....|++.++|.. .++..+-.+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~-~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS-DAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 334468889999999998888876642222121 345678999999865 555555443
No 95
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.36 E-value=2.4e-06 Score=80.74 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=62.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCc---hHHHHHH--
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI--QDIRKIQGEIADKLGLTLHEESD---SGRARSL-- 246 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~l~~~i~~~l~~~~~~~~~---~~~~~~l-- 246 (390)
....++|+|++|+|||||++.+++..... +|+..+|+.+.+. .++.++++.+...+-....+.+. ......+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 45678999999999999999999988654 7999999999865 68899999885433222111111 1122222
Q ss_pred --HHHHhCCCeEEEEEeCCC
Q 042806 247 --RNRLKKEKTILVILDNIW 264 (390)
Q Consensus 247 --~~~l~~~~~~LlVlDdv~ 264 (390)
......+++.+|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 222234667999999996
No 96
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.33 E-value=4.5e-06 Score=75.00 Aligned_cols=183 Identities=19% Similarity=0.155 Sum_probs=114.9
Q ss_pred cccCcccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeE-EEEEeCCCCCHHHHHHHHH
Q 042806 149 SIKDYEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQV-IFVEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 149 ~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~-~wv~v~~~~~~~~l~~~i~ 227 (390)
.|...+.+.|-+..+.-|.+.+.....+....|||+|.|||+-|+.+....-..+.|.+. .-.++|...-.. +.+.=.
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~Ki 109 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREKI 109 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhhh
Confidence 344467789999999999999988778899999999999999999998887554556543 334554432221 111000
Q ss_pred HHhCCCCCCCCchHHHHHHHHHH----h-CCCe-EEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecc-hhhhhhc
Q 042806 228 DKLGLTLHEESDSGRARSLRNRL----K-KEKT-ILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARS-LDVLSRK 298 (390)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l----~-~~~~-~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~-~~v~~~~ 298 (390)
+.+ ..+.-.. . .-.+ -++|||+++.. +.|..+...+-+....++.|+.+.. ..+....
T Consensus 110 k~f-------------akl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 110 KNF-------------AKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred cCH-------------HHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 000 0000000 0 0122 38899999865 6788877666554556665555544 3322112
Q ss_pred CCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCC
Q 042806 299 MDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGL 346 (390)
Q Consensus 299 ~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 346 (390)
..-...+..++|.+++...-++..+......-+ .+..+.|++.++|-
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGD 223 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCc
Confidence 223357889999999999888888863333333 34567899999874
No 97
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=2.9e-05 Score=78.20 Aligned_cols=194 Identities=15% Similarity=0.131 Sum_probs=108.0
Q ss_pred CcccccchhHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042806 152 DYEACESRMSTLNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL 230 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l 230 (390)
....++|.+.....|.+++..++ .+.+.++|+.|+||||+|+.+..........+.. .++.+ .....+....
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~---pC~~C----~~C~~i~~g~ 86 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE---PCNEC----EICKAITNGS 86 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCcc----HHHHHHhcCC
Confidence 35678999999999999988765 4567789999999999999998875322110000 00000 1111111110
Q ss_pred CCC-----CCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEe-cchhhhhhc
Q 042806 231 GLT-----LHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTA-RSLDVLSRK 298 (390)
Q Consensus 231 ~~~-----~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTt-r~~~v~~~~ 298 (390)
..+ .........+..+.+.+. .++.-++|+|+++.. ..+..+...+..-.....+|++| ....+....
T Consensus 87 ~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 87 LMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH
Confidence 000 000011112223333322 233368899999754 34555544443323344455444 444443222
Q ss_pred CCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 299 MDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 299 ~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
..-...+++.+++.++....+...+.......+ .+.+..|++.++|-+.-+..+
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~-~~al~~ia~~s~G~~R~al~~ 220 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGIEYE-DEALRLIARAAEGGMRDALSI 220 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 333468889999999999988887742221122 346778899998877654433
No 98
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.32 E-value=1e-05 Score=79.78 Aligned_cols=159 Identities=14% Similarity=0.146 Sum_probs=94.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEK 254 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 254 (390)
...+.|+|++|+|||+|++.+.+.......-..++|++. .++...+...+... ....+.+.+..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~~-- 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS------EKFTNDFVNALRNN--------TMEEFKEKYRS-- 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC--------cHHHHHHHHhc--
Confidence 356889999999999999999999865421223455543 33444444444211 12344455543
Q ss_pred eEEEEEeCCCCCcc---c-ccccCCCCC-CCCCcEEEEEecch--hhh------hhcCCCcceEecCCCCHHHHHHHHHH
Q 042806 255 TILVILDNIWGNLD---F-QAVGIPHGD-DRKGCKVLLTARSL--DVL------SRKMDSQQNFSVGVLKEDEAWSLFKK 321 (390)
Q Consensus 255 ~~LlVlDdv~~~~~---~-~~l~~~l~~-~~~~s~IivTtr~~--~v~------~~~~~~~~~~~l~~L~~~ea~~lf~~ 321 (390)
.-+|+|||++.... + +.+...+.. ...|..||+|+... .+. ...+..+..+++++.+.++-..+++.
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 24899999974311 1 222221111 12344577777642 111 11334556899999999999999999
Q ss_pred hhCCCCCCCchHHHHHHHHHHcCCChHHH
Q 042806 322 MAGDYIEGSEFKWVAKDVARECAGLPVSI 350 (390)
Q Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~GlPLai 350 (390)
.+..... .-.+++...|++.++|..-.+
T Consensus 292 ~~~~~~~-~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 292 KAEEEGI-DLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHcCC-CCCHHHHHHHHcCcCCCHHHH
Confidence 8853211 112457788999888876643
No 99
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.30 E-value=1.1e-05 Score=74.74 Aligned_cols=196 Identities=15% Similarity=0.140 Sum_probs=116.7
Q ss_pred ccccchhHHHHHHHHHhcCCC---ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042806 154 EACESRMSTLNDILDALKNPD---VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL 230 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~~~---~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l 230 (390)
+.+.+|+.++..+...+.++. +..+.|+|.+|.|||.+++++++..... .+|+++-.+++..-++..|+...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHHHHHHHHHHh
Confidence 468899999999999887654 3456899999999999999999988433 68999999999999999999998
Q ss_pred CCC-CCCCCch---HHHHHHHHHHh------C-CCeEEEEEeCCCCCcccccccCC----CC--CCCCCcEEEEEecc-h
Q 042806 231 GLT-LHEESDS---GRARSLRNRLK------K-EKTILVILDNIWGNLDFQAVGIP----HG--DDRKGCKVLLTARS-L 292 (390)
Q Consensus 231 ~~~-~~~~~~~---~~~~~l~~~l~------~-~~~~LlVlDdv~~~~~~~~l~~~----l~--~~~~~s~IivTtr~-~ 292 (390)
+.. .+..... .....+...+. + +..++||||+++...+.+....+ ++ -+.+...|++..-. +
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE 160 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence 622 2211111 11222222221 1 23599999999766544432110 00 12334434433332 2
Q ss_pred hhhhhcCCCc--ceEecCCCCHHHHHHHHHHhhCCCCC----CCchHHHHHHHHHHcCCChHHHHHHHH
Q 042806 293 DVLSRKMDSQ--QNFSVGVLKEDEAWSLFKKMAGDYIE----GSEFKWVAKDVARECAGLPVSIVTVAR 355 (390)
Q Consensus 293 ~v~~~~~~~~--~~~~l~~L~~~ea~~lf~~~~~~~~~----~~~~~~~~~~i~~~~~GlPLai~~l~~ 355 (390)
......++.. .++....-+.+|..++|.+.-.+... ..-+.-+..-....|+ -+-.+..++.
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~ 228 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLIS 228 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHH
Confidence 2211112332 46777888899998888664421111 0111122344555666 5555555543
No 100
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=3.5e-05 Score=77.38 Aligned_cols=194 Identities=13% Similarity=0.129 Sum_probs=109.1
Q ss_pred CcccccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042806 152 DYEACESRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL 230 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l 230 (390)
....++|-+..+..|..++..++. +.+.++|+.|+||||+|+.+++.......... ..+..+.+- +.+...-
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~~~~ 86 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSIDNDN 86 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHHcCC
Confidence 345789999999999999987664 46889999999999999999988643211100 001111111 0110000
Q ss_pred CC-----CCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecc-hhhhhhc
Q 042806 231 GL-----TLHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARS-LDVLSRK 298 (390)
Q Consensus 231 ~~-----~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~-~~v~~~~ 298 (390)
.. ..........+..+.+.+. .+++-++|+|+++.. ..++.+...+..-.+.+.+|++|.. ..+....
T Consensus 87 ~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 87 SLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 00 0000001112222222111 123358999999755 3355555454433445566555543 3333222
Q ss_pred CCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 299 MDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 299 ~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
..-...+++.+++.++..+.+...+....... .++.+..|++.++|.+-.+..+
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i-d~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY-EDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 33345789999999999888888774222211 2456778999999988654444
No 101
>PRK06620 hypothetical protein; Validated
Probab=98.28 E-value=5.5e-06 Score=72.98 Aligned_cols=141 Identities=15% Similarity=0.009 Sum_probs=84.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKT 255 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 255 (390)
+.+.|+|++|+|||+|++.+++.... .++. ..+... +.... .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~~~---------------------------~~~~~-~- 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFFNE---------------------------EILEK-Y- 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhhch---------------------------hHHhc-C-
Confidence 56899999999999999988776421 1111 000000 01112 2
Q ss_pred EEEEEeCCCCCcc--cccccCCCCCCCCCcEEEEEecchhhh------hhcCCCcceEecCCCCHHHHHHHHHHhhCCCC
Q 042806 256 ILVILDNIWGNLD--FQAVGIPHGDDRKGCKVLLTARSLDVL------SRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYI 327 (390)
Q Consensus 256 ~LlVlDdv~~~~~--~~~l~~~l~~~~~~s~IivTtr~~~v~------~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~ 327 (390)
-++++||++...+ +-.+...+ ...|..||+|++..... ...+..+..+++++++.++-..++.+.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~--~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNII--NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHH--HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 4788899974321 11111111 13466889998843211 11234556899999999998888888775221
Q ss_pred CCCchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042806 328 EGSEFKWVAKDVARECAGLPVSIVTVARAL 357 (390)
Q Consensus 328 ~~~~~~~~~~~i~~~~~GlPLai~~l~~~L 357 (390)
. .--+++.+.|++.+.|---.+.-+-..|
T Consensus 165 l-~l~~ev~~~L~~~~~~d~r~l~~~l~~l 193 (214)
T PRK06620 165 V-TISRQIIDFLLVNLPREYSKIIEILENI 193 (214)
T ss_pred C-CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 1 1225678899999988776665554433
No 102
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.26 E-value=1.9e-05 Score=77.81 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=90.0
Q ss_pred cccccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcC---CCCeEEEEEeCCC
Q 042806 153 YEACESRMSTLNDILDALKN-------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEK---LFDQVIFVEVSKI 216 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~---~f~~~~wv~v~~~ 216 (390)
...+.|.+..++++.+.+.- ..++-+.++|++|+|||++|+.+++.....- ......|+.++..
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 45677888888877776531 2345688999999999999999999875321 0123445554432
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHH----HhCCCeEEEEEeCCCCCc---------c-----cccccCCCCC
Q 042806 217 QDIRKIQGEIADKLGLTLHEESDSGRARSLRNR----LKKEKTILVILDNIWGNL---------D-----FQAVGIPHGD 278 (390)
Q Consensus 217 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~----l~~~~~~LlVlDdv~~~~---------~-----~~~l~~~l~~ 278 (390)
+++... .+ .....+..+.+. ...+++++|+||+++... + ...+...+..
T Consensus 261 ----eLl~ky---vG------ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 261 ----ELLNKY---VG------ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG 327 (512)
T ss_pred ----hhcccc---cc------hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence 111100 00 011112222222 223467999999997431 1 1122222211
Q ss_pred --CCCCcEEEEEecchhhhh-hcC---CCcceEecCCCCHHHHHHHHHHhhCC
Q 042806 279 --DRKGCKVLLTARSLDVLS-RKM---DSQQNFSVGVLKEDEAWSLFKKMAGD 325 (390)
Q Consensus 279 --~~~~s~IivTtr~~~v~~-~~~---~~~~~~~l~~L~~~ea~~lf~~~~~~ 325 (390)
...+..||.||....... ... .....|++.+.+.++..++|..++..
T Consensus 328 l~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 328 VESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 123455666665543321 112 22346999999999999999998753
No 103
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.25 E-value=1.8e-05 Score=77.48 Aligned_cols=157 Identities=16% Similarity=0.164 Sum_probs=93.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFD-QVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKE 253 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (390)
..-+.|+|++|+|||+|++.+++..... +.. .+.|++. .++...+...+... ....+.+.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~f~~~~~~- 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMKEG--------KLNEFREKYRK- 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHHHHHHHHh-
Confidence 3458899999999999999999987643 222 4556543 45566665555321 12233344332
Q ss_pred CeEEEEEeCCCCCc---cc-ccccCCCCC-CCCCcEEEEEec-chhh----hhh---cCCCcceEecCCCCHHHHHHHHH
Q 042806 254 KTILVILDNIWGNL---DF-QAVGIPHGD-DRKGCKVLLTAR-SLDV----LSR---KMDSQQNFSVGVLKEDEAWSLFK 320 (390)
Q Consensus 254 ~~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~~s~IivTtr-~~~v----~~~---~~~~~~~~~l~~L~~~ea~~lf~ 320 (390)
+.-+|++||++... .+ ..+...+.. ...|..||+||. ...- ... .+..+..+++++.+.+.-..+++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 22589999997431 11 122222211 123456888875 2211 111 23455688999999999999999
Q ss_pred HhhCCCCCCCchHHHHHHHHHHcCCChH
Q 042806 321 KMAGDYIEGSEFKWVAKDVARECAGLPV 348 (390)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~i~~~~~GlPL 348 (390)
+.+......- -+++...|++.+.|..-
T Consensus 274 ~~~~~~~~~l-~~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 274 KMLEIEHGEL-PEEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHhcCCCC-CHHHHHHHHhccccCHH
Confidence 8875221111 24567788888877533
No 104
>CHL00181 cbbX CbbX; Provisional
Probab=98.25 E-value=1.3e-05 Score=73.81 Aligned_cols=132 Identities=15% Similarity=0.127 Sum_probs=73.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeE
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTI 256 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 256 (390)
.+.++|++|+||||+|+.++......+.-....|+.++. .++.... .+.. . ......+.....-
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~---~g~~-----~----~~~~~~l~~a~gg 124 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQY---IGHT-----A----PKTKEVLKKAMGG 124 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHH---hccc-----h----HHHHHHHHHccCC
Confidence 477899999999999999988764322222222555542 2222221 1110 0 1112222221225
Q ss_pred EEEEeCCCCC-----------cccccccCCCCCCCCCcEEEEEecchhhhh-------hcCCCcceEecCCCCHHHHHHH
Q 042806 257 LVILDNIWGN-----------LDFQAVGIPHGDDRKGCKVLLTARSLDVLS-------RKMDSQQNFSVGVLKEDEAWSL 318 (390)
Q Consensus 257 LlVlDdv~~~-----------~~~~~l~~~l~~~~~~s~IivTtr~~~v~~-------~~~~~~~~~~l~~L~~~ea~~l 318 (390)
+|++|++... ...+.+...+.+...+.+||+++....... ........+++.+++.+|..++
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 9999999642 112223233333345567777776433210 0112345899999999999999
Q ss_pred HHHhhC
Q 042806 319 FKKMAG 324 (390)
Q Consensus 319 f~~~~~ 324 (390)
+...+.
T Consensus 205 ~~~~l~ 210 (287)
T CHL00181 205 AKIMLE 210 (287)
T ss_pred HHHHHH
Confidence 988874
No 105
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.24 E-value=0.00014 Score=64.04 Aligned_cols=178 Identities=15% Similarity=0.134 Sum_probs=106.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCchHHH----HHHH
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVS-KIQDIRKIQGEIADKLGLTLHEESDSGRA----RSLR 247 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~l~~~i~~~l~~~~~~~~~~~~~----~~l~ 247 (390)
++..++.++|.-|+|||++++......... +... +.++ +..+...+...++..+..+.. ....... ..+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d---~~~~-v~i~~~~~s~~~~~~ai~~~l~~~p~-~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNED---QVAV-VVIDKPTLSDATLLEAIVADLESQPK-VNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCC---ceEE-EEecCcchhHHHHHHHHHHHhccCcc-chhHHHHHHHHHHHH
Confidence 456799999999999999999555554322 1222 4443 455778888888888877322 2222222 2333
Q ss_pred HHHhC-CCeEEEEEeCCCCC--cccccccCCC---CCCCCCcEEEEEecchhhhh------hcC-CCcce-EecCCCCHH
Q 042806 248 NRLKK-EKTILVILDNIWGN--LDFQAVGIPH---GDDRKGCKVLLTARSLDVLS------RKM-DSQQN-FSVGVLKED 313 (390)
Q Consensus 248 ~~l~~-~~~~LlVlDdv~~~--~~~~~l~~~l---~~~~~~s~IivTtr~~~v~~------~~~-~~~~~-~~l~~L~~~ 313 (390)
...+. +++..+++|+.++. +.++.++... .+....-+|+.....+-... ... .-... |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 33344 45599999999755 3333332211 11111234555554321110 000 11123 999999999
Q ss_pred HHHHHHHHhhCCC--CCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042806 314 EAWSLFKKMAGDY--IEGSEFKWVAKDVARECAGLPVSIVTVAR 355 (390)
Q Consensus 314 ea~~lf~~~~~~~--~~~~~~~~~~~~i~~~~~GlPLai~~l~~ 355 (390)
+...++++++... ..+--.++....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999999888622 22222245677899999999999988763
No 106
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.22 E-value=2.1e-05 Score=83.34 Aligned_cols=158 Identities=13% Similarity=0.152 Sum_probs=89.9
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCC----CeEEEEEeCCCCCHHHHHHHHHH
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLF----DQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f----~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
.++++||+.++.++++.|.......+.++|++|+|||+++..+.......... ...+|. + +...++.
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~-l----~~~~l~a---- 242 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA-L----DMGALIA---- 242 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE-e----eHHHHhh----
Confidence 46799999999999999987666667799999999999999999886432111 222221 1 1111110
Q ss_pred HhCCCCCCCCchHHHHHHHHHHh-CCCeEEEEEeCCCCCcc---------cccccCCCCCCCCCcEEEEEecchhhh---
Q 042806 229 KLGLTLHEESDSGRARSLRNRLK-KEKTILVILDNIWGNLD---------FQAVGIPHGDDRKGCKVLLTARSLDVL--- 295 (390)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~~~---------~~~l~~~l~~~~~~s~IivTtr~~~v~--- 295 (390)
+ ..........+..+.+.+. .+++.+|++|+++.... ...+..+... ....++|.+|.....-
T Consensus 243 --~-~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaTt~~e~r~~~ 318 (852)
T TIGR03346 243 --G-AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGATTLDEYRKYI 318 (852)
T ss_pred --c-chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeCcHHHHHHHh
Confidence 0 0000011223334444443 23459999999974321 1112222212 2234555555543321
Q ss_pred ---hhcCCCcceEecCCCCHHHHHHHHHHhh
Q 042806 296 ---SRKMDSQQNFSVGVLKEDEAWSLFKKMA 323 (390)
Q Consensus 296 ---~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 323 (390)
.....-...+.+...+.++..++++...
T Consensus 319 ~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 319 EKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 0011122468899999999999988664
No 107
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.20 E-value=4e-05 Score=74.93 Aligned_cols=153 Identities=8% Similarity=0.070 Sum_probs=89.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKT 255 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 255 (390)
..+.|+|+.|+|||+|++.+++..... -..++|++ ..++...+...+... ....+.+.+...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~--------~~~~f~~~~~~~-- 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG--------EMQRFRQFYRNV-- 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc--------hHHHHHHHcccC--
Confidence 568899999999999999999987543 22345543 344555555554321 122344444332
Q ss_pred EEEEEeCCCCCcc----cccccCCCCC-CCCCcEEEEEecch-h----hh---hhcCCCcceEecCCCCHHHHHHHHHHh
Q 042806 256 ILVILDNIWGNLD----FQAVGIPHGD-DRKGCKVLLTARSL-D----VL---SRKMDSQQNFSVGVLKEDEAWSLFKKM 322 (390)
Q Consensus 256 ~LlVlDdv~~~~~----~~~l~~~l~~-~~~~s~IivTtr~~-~----v~---~~~~~~~~~~~l~~L~~~ea~~lf~~~ 322 (390)
-+|++||++.... .+.+...+.. ...|..||+||... . +. ...+..+..+++.+++.++-..++.+.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 4889999975422 1122222210 12345688888542 1 11 112445679999999999999999888
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCCh
Q 042806 323 AGDYIEGSEFKWVAKDVARECAGLP 347 (390)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~~~GlP 347 (390)
+...... --+++...|+..+.|.-
T Consensus 284 ~~~~~~~-l~~evl~~la~~~~~di 307 (445)
T PRK12422 284 AEALSIR-IEETALDFLIEALSSNV 307 (445)
T ss_pred HHHcCCC-CCHHHHHHHHHhcCCCH
Confidence 7522111 12456666777776443
No 108
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.19 E-value=3e-05 Score=81.96 Aligned_cols=157 Identities=13% Similarity=0.159 Sum_probs=88.5
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCe-EEEEEeCCCCCHHHHHHHHH
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKL----FDQ-VIFVEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----f~~-~~wv~v~~~~~~~~l~~~i~ 227 (390)
.++++||+.++.++++.|.......+.++|++|+|||++|..+......... ... .+++.++. ++..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~ag-- 248 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVAG-- 248 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhhc--
Confidence 5689999999999999998766667779999999999999999998643211 122 22222221 1100
Q ss_pred HHhCCCCCCCCchHHHHHHHHHH-hCCCeEEEEEeCCCCCc---------ccccccCCCCCCCCCcEEEEEecchhhh--
Q 042806 228 DKLGLTLHEESDSGRARSLRNRL-KKEKTILVILDNIWGNL---------DFQAVGIPHGDDRKGCKVLLTARSLDVL-- 295 (390)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l-~~~~~~LlVlDdv~~~~---------~~~~l~~~l~~~~~~s~IivTtr~~~v~-- 295 (390)
..........+..+.+.+ ..+++.+|++|+++... +...+..+... ....++|-+|.....-
T Consensus 249 -----~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~-~g~l~~IgaTt~~e~r~~ 322 (857)
T PRK10865 249 -----AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQY 322 (857)
T ss_pred -----cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-cCCCeEEEcCCCHHHHHH
Confidence 000001112233333333 22345999999997442 11222222222 2234566555544320
Q ss_pred ----hhcCCCcceEecCCCCHHHHHHHHHHhh
Q 042806 296 ----SRKMDSQQNFSVGVLKEDEAWSLFKKMA 323 (390)
Q Consensus 296 ----~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 323 (390)
.....-...+.+...+.++...+++...
T Consensus 323 ~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 323 IEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred hhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 0011122356677778899999887655
No 109
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.19 E-value=4e-06 Score=67.65 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 042806 178 LGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
|.|+|++|+|||++++.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999975
No 110
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=7.9e-05 Score=69.56 Aligned_cols=195 Identities=13% Similarity=0.109 Sum_probs=109.7
Q ss_pred ccccchhHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhc--------------CCCCeEEEEEeCCCCC
Q 042806 154 EACESRMSTLNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETE--------------KLFDQVIFVEVSKIQD 218 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~--------------~~f~~~~wv~v~~~~~ 218 (390)
..++|.+...+.+...+..++ .+...++|+.|+||+++|..+.+..-.. .|.| ..|+.-.....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecccccc
Confidence 367899999999999998877 4789999999999999999998875322 1222 23332110000
Q ss_pred HHHHHHHHHHHhCC--CCCCCCchHHHHHHHHHHhC----CCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEec
Q 042806 219 IRKIQGEIADKLGL--TLHEESDSGRARSLRNRLKK----EKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTAR 290 (390)
Q Consensus 219 ~~~l~~~i~~~l~~--~~~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr 290 (390)
-..+-..-+...+. .....-..+.+..+.+.+.. +++-++|+|+++.. ...+.+...+-.-. .+.+|++|.
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 00000000111110 00000011223445554431 23369999998654 23344433332222 344555554
Q ss_pred -chhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042806 291 -SLDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 291 -~~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
...+......-...+++.+++.++..+.+.+....... ......++..++|.|..+..+.
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~----~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL----NINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc----hhHHHHHHHHcCCCHHHHHHHH
Confidence 44444434445579999999999999999887532111 1113578999999997665543
No 111
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.19 E-value=2e-05 Score=75.91 Aligned_cols=175 Identities=15% Similarity=0.215 Sum_probs=96.7
Q ss_pred cccccchhHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 153 YEACESRMSTLNDILDALK----N---------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
..++.|-+..+++|.+.+. . +.++-+.++|++|+|||+||+.+++..... | +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f-----i~i~~---- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F-----IRVVG---- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEeh----
Confidence 4457777776666655442 1 235778999999999999999999876432 2 22211
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc------------c----cccccCCCC--CCCC
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL------------D----FQAVGIPHG--DDRK 281 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~----~~~l~~~l~--~~~~ 281 (390)
.++... .++ .....+..+........+.+|+||+++... . +..+...+. ....
T Consensus 213 s~l~~k---~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 213 SEFVQK---YLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred HHHHHH---hcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 111111 111 111233444455555567999999986321 0 111111111 1224
Q ss_pred CcEEEEEecchhhh-hhcC---CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHH
Q 042806 282 GCKVLLTARSLDVL-SRKM---DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVS 349 (390)
Q Consensus 282 ~s~IivTtr~~~v~-~~~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLa 349 (390)
+..||+||...... .... .....+++...+.++-.++|+.+.......++.. ...+++.+.|+.-|
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd--~~~la~~t~g~sga 353 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD--LEDFVSRPEKISAA 353 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC--HHHHHHHcCCCCHH
Confidence 56788888754332 1112 2235788999999998888887764222222111 34667777666433
No 112
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.17 E-value=9.1e-06 Score=65.85 Aligned_cols=90 Identities=29% Similarity=0.200 Sum_probs=51.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKT 255 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 255 (390)
..+.|+|++|+||||+++.++....... ...+++..+........... ...................+.+.....+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5788999999999999999999876432 23555555443221111111 11111122222333344455555554445
Q ss_pred EEEEEeCCCCCcc
Q 042806 256 ILVILDNIWGNLD 268 (390)
Q Consensus 256 ~LlVlDdv~~~~~ 268 (390)
.++++|++.....
T Consensus 80 ~viiiDei~~~~~ 92 (148)
T smart00382 80 DVLILDEITSLLD 92 (148)
T ss_pred CEEEEECCcccCC
Confidence 8999999986643
No 113
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.14 E-value=1.9e-05 Score=76.02 Aligned_cols=69 Identities=20% Similarity=0.145 Sum_probs=56.3
Q ss_pred ccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 042806 154 EACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQG 224 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~ 224 (390)
..++..+..++.++..|.. .+.+.++|++|+|||++|+.+++.......|+.+.||.+++..+..+++.
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 3466778888889888874 34677899999999999999999886655688899999999888777654
No 114
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.14 E-value=0.0001 Score=73.61 Aligned_cols=179 Identities=21% Similarity=0.230 Sum_probs=95.2
Q ss_pred cccccchhHHHHH---HHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 042806 153 YEACESRMSTLND---ILDALKN---------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIR 220 (390)
Q Consensus 153 ~~~~~gR~~~~~~---l~~~L~~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 220 (390)
..++.|-+...++ +++++.. ..++-+.++|++|+|||+||+.+++..... ++.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccH----H
Confidence 4456676554444 4444332 224568899999999999999998876432 222321 1
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcc------------c----ccccCCCC--CCCCC
Q 042806 221 KIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNLD------------F----QAVGIPHG--DDRKG 282 (390)
Q Consensus 221 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~------------~----~~l~~~l~--~~~~~ 282 (390)
++.... .+ .....+..+.+......+++|+||+++.... + ..+...+. ....+
T Consensus 123 ~~~~~~---~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 DFVEMF---VG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HHHHHH---hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 111110 01 0112233444444445569999999964310 0 11111111 12334
Q ss_pred cEEEEEecchhhh-hhcC---CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCh-HHHHHH
Q 042806 283 CKVLLTARSLDVL-SRKM---DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLP-VSIVTV 353 (390)
Q Consensus 283 s~IivTtr~~~v~-~~~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP-Lai~~l 353 (390)
..||.||...... .... .....+++...+.++-.++|..++.......+ .....+++.+.|.- --|..+
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCCHHHHHHH
Confidence 5666667653321 1111 23358889999999889999887753222222 12457888887743 344443
No 115
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.09 E-value=7.9e-05 Score=66.51 Aligned_cols=178 Identities=14% Similarity=0.100 Sum_probs=104.4
Q ss_pred cCcccccchhHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 042806 151 KDYEACESRMSTLNDILDALK-----NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGE 225 (390)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~ 225 (390)
.....|+|.++-.++|-=.+. +..+--+.++||+|.||||||..+++...+. +. +..++-
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k----~tsGp~--------- 87 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LK----ITSGPA--------- 87 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eE----eccccc---------
Confidence 335679998887777755443 2345668899999999999999999998764 21 111111
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc---------ccccccCCC-CCCC-----------CCcE
Q 042806 226 IADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL---------DFQAVGIPH-GDDR-----------KGCK 284 (390)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---------~~~~l~~~l-~~~~-----------~~s~ 284 (390)
......+..+...|..+. ++.+|.++... ..+++..-. -..+ +-.-
T Consensus 88 -----------leK~gDlaaiLt~Le~~D--VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 88 -----------LEKPGDLAAILTNLEEGD--VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred -----------ccChhhHHHHHhcCCcCC--eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 111112222333344434 66677776331 111111100 0112 2234
Q ss_pred EEEEecchhhhhh-cCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042806 285 VLLTARSLDVLSR-KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARAL 357 (390)
Q Consensus 285 IivTtr~~~v~~~-~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L 357 (390)
|=.|||.-.+..- ....+.+.+++..+.+|-.++..+.+..-.. .-.++.+.+|+++..|-|--..-+-+-.
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-EIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 5578886544211 1223458889999999999999888751111 1113467899999999998766555433
No 116
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.09 E-value=1.1e-05 Score=83.56 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=91.6
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcC-C---CCeEEEEEeCCCCCHHHHHHHHHH
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEK-L---FDQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~-~---f~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
.++++||+.++.++++.|......-+.++|++|+|||++|+.+++.....+ . .++.+|. . +...++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~-l----~~~~lla---- 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-L----DIGSLLA---- 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe-c----cHHHHhc----
Confidence 467999999999999988875555567899999999999999998753321 1 1334441 1 1111110
Q ss_pred HhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--------c--ccccccCCCCCCCCCcEEEEEecchhhh---
Q 042806 229 KLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--------L--DFQAVGIPHGDDRKGCKVLLTARSLDVL--- 295 (390)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--------~--~~~~l~~~l~~~~~~s~IivTtr~~~v~--- 295 (390)
+ .............+.+.+....+.+|++|+++.. . +...+..++.. ....++|-+|......
T Consensus 256 --G-~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~~~ 331 (758)
T PRK11034 256 --G-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIF 331 (758)
T ss_pred --c-cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHHHh
Confidence 0 0001112223344444454444589999999732 1 11111222212 2334566665543321
Q ss_pred ---hhcCCCcceEecCCCCHHHHHHHHHHhh
Q 042806 296 ---SRKMDSQQNFSVGVLKEDEAWSLFKKMA 323 (390)
Q Consensus 296 ---~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 323 (390)
.....-...+++.+++.++..++++...
T Consensus 332 ~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 332 EKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0011122589999999999999998764
No 117
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=9.9e-05 Score=69.29 Aligned_cols=151 Identities=15% Similarity=0.119 Sum_probs=89.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcC--------------------CCCeEEEEEeC---CCCCHHHHHHHHHHHhC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEK--------------------LFDQVIFVEVS---KIQDIRKIQGEIADKLG 231 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~v~---~~~~~~~l~~~i~~~l~ 231 (390)
...+.++|+.|+|||++|+.+....--.. |.| ..|+.-. ....+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~~~i~i------------ 88 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEADKTIKV------------ 88 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCCCCCCH------------
Confidence 56788999999999999999988864221 112 1122110 01111
Q ss_pred CCCCCCCchHHHHHHHHHHh-----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecch-hhhhhcCCCcc
Q 042806 232 LTLHEESDSGRARSLRNRLK-----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARSL-DVLSRKMDSQQ 303 (390)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~l~-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~~-~v~~~~~~~~~ 303 (390)
+.+..+.+.+. +++ -++|+|+++.. ...+.+...+-.-..++.+|++|.+. .+.....+-..
T Consensus 89 ---------d~iR~l~~~~~~~~~~~~~-kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~ 158 (328)
T PRK05707 89 ---------DQVRELVSFVVQTAQLGGR-KVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQ 158 (328)
T ss_pred ---------HHHHHHHHHHhhccccCCC-eEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhce
Confidence 12222333321 234 45678999754 34444544443333567777777764 44333334456
Q ss_pred eEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 304 NFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 304 ~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
.+++.+++.+++.+.+...... . .++.+..++..++|.|+....+
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~~-~----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALPE-S----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhccc-C----ChHHHHHHHHHcCCCHHHHHHH
Confidence 8999999999999988776421 1 1233557889999999865544
No 118
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.08 E-value=2.1e-05 Score=74.83 Aligned_cols=132 Identities=16% Similarity=0.162 Sum_probs=82.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEK 254 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 254 (390)
...+.|||+.|.|||.|++.+.+..... ......+.+ +.++....++..+.. .....+.+.. +-
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~--~~~a~v~y~----~se~f~~~~v~a~~~--------~~~~~Fk~~y-~~- 176 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALAN--GPNARVVYL----TSEDFTNDFVKALRD--------NEMEKFKEKY-SL- 176 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhh--CCCceEEec----cHHHHHHHHHHHHHh--------hhHHHHHHhh-cc-
Confidence 6789999999999999999999998754 332233333 334444444444322 1234455554 32
Q ss_pred eEEEEEeCCCCCc---ccc-cccCCCCC-CCCCcEEEEEecch---------hhhhhcCCCcceEecCCCCHHHHHHHHH
Q 042806 255 TILVILDNIWGNL---DFQ-AVGIPHGD-DRKGCKVLLTARSL---------DVLSRKMDSQQNFSVGVLKEDEAWSLFK 320 (390)
Q Consensus 255 ~~LlVlDdv~~~~---~~~-~l~~~l~~-~~~~s~IivTtr~~---------~v~~~~~~~~~~~~l~~L~~~ea~~lf~ 320 (390)
=++++||++-.. .|+ .+...|.. ...|-.||+|++.. .+. ..+..+-.+++.+.+.+....+++
T Consensus 177 -dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~-SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 177 -DLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLR-SRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred -CeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHH-HHHhceeEEeeCCCCHHHHHHHHH
Confidence 389999997532 222 23222221 12334899999642 221 235566899999999999999999
Q ss_pred HhhC
Q 042806 321 KMAG 324 (390)
Q Consensus 321 ~~~~ 324 (390)
+.+.
T Consensus 255 kka~ 258 (408)
T COG0593 255 KKAE 258 (408)
T ss_pred HHHH
Confidence 8775
No 119
>CHL00176 ftsH cell division protein; Validated
Probab=98.06 E-value=6.2e-05 Score=76.61 Aligned_cols=169 Identities=20% Similarity=0.265 Sum_probs=93.9
Q ss_pred cccchhH---HHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHH
Q 042806 155 ACESRMS---TLNDILDALKNP---------DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKI 222 (390)
Q Consensus 155 ~~~gR~~---~~~~l~~~L~~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l 222 (390)
++.|.++ ++.++++.+..+ .++-+.++|++|+|||+||+.++...... |+.++.. ++
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s----~f 252 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS----EF 252 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH----HH
Confidence 4555543 445555555542 24568899999999999999998876432 2333221 11
Q ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc------------c----cccccCCCC--CCCCCcE
Q 042806 223 QGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL------------D----FQAVGIPHG--DDRKGCK 284 (390)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~----~~~l~~~l~--~~~~~s~ 284 (390)
.... .+ .....+..+.+......+++|+|||++... . +..+...+. ....+..
T Consensus 253 ~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 253 VEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 1100 01 011123334444445567999999996331 1 111211111 1234566
Q ss_pred EEEEecchhhhh-hcC---CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC
Q 042806 285 VLLTARSLDVLS-RKM---DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAG 345 (390)
Q Consensus 285 IivTtr~~~v~~-~~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G 345 (390)
||.||....... ... .....+.+...+.++-.++|+.++......+ ......+++.+.|
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPG 386 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCC
Confidence 777776643321 111 1235888999999999999988875322222 2235678888887
No 120
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.05 E-value=0.00027 Score=62.46 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=40.2
Q ss_pred ccCcccccchhHHHHHHHHH----hcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 150 IKDYEACESRMSTLNDILDA----LKNPDVNMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~----L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
+.+.+.++|-+...+.|++. +.+....-+.+||..|.|||+|++.+.+....+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 34456788888888777654 333444567789999999999999999987654
No 121
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.00024 Score=65.55 Aligned_cols=184 Identities=18% Similarity=0.245 Sum_probs=110.2
Q ss_pred CcccccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 042806 152 DYEACESRMSTLNDILDALKN-------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQD 218 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 218 (390)
.+..+.|-++.+.+|.+.+.- +.++=|.+|||+|.|||-||+.|++.... .|+.+...
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-------tFIrvvgS-- 219 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-------TFIRVVGS-- 219 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-------eEEEeccH--
Confidence 355677778878777776542 35677889999999999999999998753 34444332
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC-------------cc---cccccCCCC--CCC
Q 042806 219 IRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN-------------LD---FQAVGIPHG--DDR 280 (390)
Q Consensus 219 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~-------------~~---~~~l~~~l~--~~~ 280 (390)
++.+.. +| .-..++..+.+.-+.+.++.|.+|.++.. +. .-.|...+. +..
T Consensus 220 --ElVqKY---iG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 220 --ELVQKY---IG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred --HHHHHH---hc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 222221 12 23456778888888889999999999632 00 111111111 123
Q ss_pred CCcEEEEEecchhhhh-hcCC---CcceEecCCCCHHHHHHHHHHhhC--CCCCCCchHHHHHHHHHHcCCChH----HH
Q 042806 281 KGCKVLLTARSLDVLS-RKMD---SQQNFSVGVLKEDEAWSLFKKMAG--DYIEGSEFKWVAKDVARECAGLPV----SI 350 (390)
Q Consensus 281 ~~s~IivTtr~~~v~~-~~~~---~~~~~~l~~L~~~ea~~lf~~~~~--~~~~~~~~~~~~~~i~~~~~GlPL----ai 350 (390)
...|||..|...++.. ..+. -.+.+++..-+.+.=.++|+-+.. .-....+++ .+++.|.|.-= ||
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlkai 364 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKAI 364 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHHH
Confidence 4568888887655432 1122 235777775555555677776664 233334444 56667766542 34
Q ss_pred HHHHHHhcC
Q 042806 351 VTVARALGT 359 (390)
Q Consensus 351 ~~l~~~L~~ 359 (390)
-+=|+++.-
T Consensus 365 ctEAGm~Ai 373 (406)
T COG1222 365 CTEAGMFAI 373 (406)
T ss_pred HHHHhHHHH
Confidence 444666543
No 122
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.02 E-value=2.7e-05 Score=78.71 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=41.8
Q ss_pred ccCcccccchhHHHHHHHHHhcCC-----CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 150 IKDYEACESRMSTLNDILDALKNP-----DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~~-----~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
|.....+++.+..+.++..++... ..+++.|+|++|+||||+++.++....
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 444677899999999998888652 345799999999999999999998764
No 123
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.01 E-value=4e-05 Score=74.36 Aligned_cols=172 Identities=18% Similarity=0.219 Sum_probs=96.0
Q ss_pred cccccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 153 YEACESRMSTLNDILDALKN-------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
..++.|.+..+++|.+.+.- ..++-+.++|++|+|||++|+.+++..... | +.+...
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--f-----i~V~~s--- 251 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--F-----LRVVGS--- 251 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--E-----EEEecc---
Confidence 34567888777777665531 234568899999999999999999976432 3 222211
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc--------c--------cccccCCCC--CCCC
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL--------D--------FQAVGIPHG--DDRK 281 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--------~--------~~~l~~~l~--~~~~ 281 (390)
++.... .+ .....+..+.+......+++|+||+++... . +..+...+. ....
T Consensus 252 -eL~~k~---~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 252 -ELIQKY---LG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred -hhhhhh---cc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 111110 00 111223444444444566899999985321 0 001111111 1233
Q ss_pred CcEEEEEecchhhhhh-cC---CCcceEecCCCCHHHHHHHHHHhhCCCC--CCCchHHHHHHHHHHcCCChH
Q 042806 282 GCKVLLTARSLDVLSR-KM---DSQQNFSVGVLKEDEAWSLFKKMAGDYI--EGSEFKWVAKDVARECAGLPV 348 (390)
Q Consensus 282 ~s~IivTtr~~~v~~~-~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~GlPL 348 (390)
+..||.||........ .. .....+++.+.+.++-.++|..++.... ...++ ..++..+.|+-=
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~sg 390 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDELSG 390 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCCCH
Confidence 5678888876433222 11 2235889999999999999998774222 12232 356666655543
No 124
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.98 E-value=0.00044 Score=65.84 Aligned_cols=197 Identities=13% Similarity=0.179 Sum_probs=122.9
Q ss_pred hhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCCeEEEEEeCCC---CCHHHHHHHHHHHhCCCC
Q 042806 159 RMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLA-KEVARKAETEKLFDQVIFVEVSKI---QDIRKIQGEIADKLGLTL 234 (390)
Q Consensus 159 R~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa-~~v~~~~~~~~~f~~~~wv~v~~~---~~~~~l~~~i~~~l~~~~ 234 (390)
|.+..++|-.||.+..-.+|.|.||.|+||+.|+ .++..+.+ .+..+.+.+- .+-..++..++.++|.-+
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999999988889999999999999999 77766533 2677777542 345566677777765321
Q ss_pred C-----------------------C--CCchHHH--------HHHHHH-------------------Hh--CCCeEEEEE
Q 042806 235 H-----------------------E--ESDSGRA--------RSLRNR-------------------LK--KEKTILVIL 260 (390)
Q Consensus 235 ~-----------------------~--~~~~~~~--------~~l~~~-------------------l~--~~~~~LlVl 260 (390)
- . .+....+ ..|+.. |. ..++-+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 0 0 0111111 111110 10 011368999
Q ss_pred eCCCCCcc-----ccccc---CCCCCCCCCcEEEEEecchhhhh---hcC--CCcceEecCCCCHHHHHHHHHHhhCCCC
Q 042806 261 DNIWGNLD-----FQAVG---IPHGDDRKGCKVLLTARSLDVLS---RKM--DSQQNFSVGVLKEDEAWSLFKKMAGDYI 327 (390)
Q Consensus 261 Ddv~~~~~-----~~~l~---~~l~~~~~~s~IivTtr~~~v~~---~~~--~~~~~~~l~~L~~~ea~~lf~~~~~~~~ 327 (390)
|++..... |+.+. ..+. .++-.+||++|-+..... ..+ ...+.+.|.-.+++.|.++...++....
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~ 233 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDT 233 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccc
Confidence 99864421 12110 1121 234557887777643322 122 2336889999999999999999885321
Q ss_pred CC-------------------CchHHHHHHHHHHcCCChHHHHHHHHHhcCCCC
Q 042806 328 EG-------------------SEFKWVAKDVARECAGLPVSIVTVARALGTRDY 362 (390)
Q Consensus 328 ~~-------------------~~~~~~~~~i~~~~~GlPLai~~l~~~L~~~~~ 362 (390)
.. .....-....+..+||-=.=+..+++.++.-..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~ 287 (431)
T PF10443_consen 234 EDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGES 287 (431)
T ss_pred cccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCC
Confidence 10 123344678899999999999999998887543
No 125
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.98 E-value=0.00023 Score=64.91 Aligned_cols=56 Identities=27% Similarity=0.274 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHH
Q 042806 161 STLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQ 223 (390)
Q Consensus 161 ~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~ 223 (390)
.-++++..++..+ .-+.|.|++|+|||+||+.+.+.... ....++++...+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg~-----~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRDR-----PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEEeCCccCCHHHHh
Confidence 3345555655543 34668999999999999999875421 24556666655555554
No 126
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.96 E-value=0.00043 Score=72.77 Aligned_cols=157 Identities=21% Similarity=0.223 Sum_probs=82.4
Q ss_pred cccchhHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042806 155 ACESRMSTLNDILDALK------NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
..+|.+.-.+.+.+++. ..+.+++.++|++|+|||++|+.+.+..... | .-++++...+..++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~--~---~~i~~~~~~~~~~i~g~--- 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK--F---VRFSLGGVRDEAEIRGH--- 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC--e---EEEeCCCcccHHHHcCC---
Confidence 46677777777776553 1244689999999999999999999987532 3 22233333333332211
Q ss_pred HhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcc------cccccC--------CCCCC-------CCCcEEEE
Q 042806 229 KLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNLD------FQAVGI--------PHGDD-------RKGCKVLL 287 (390)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~------~~~l~~--------~l~~~-------~~~s~Iiv 287 (390)
.............+.+... ...+ -+++||+++.... ...+.. .|.+. ..+..+|.
T Consensus 393 --~~~~~g~~~g~i~~~l~~~-~~~~-~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~ 468 (775)
T TIGR00763 393 --RRTYVGAMPGRIIQGLKKA-KTKN-PLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA 468 (775)
T ss_pred --CCceeCCCCchHHHHHHHh-CcCC-CEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEE
Confidence 0001111112222222222 2233 4789999964411 011111 11111 12344555
Q ss_pred Eecchh-hhhhcCCCcceEecCCCCHHHHHHHHHHhh
Q 042806 288 TARSLD-VLSRKMDSQQNFSVGVLKEDEAWSLFKKMA 323 (390)
Q Consensus 288 Ttr~~~-v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 323 (390)
||.... +......-...+++.+++.++-.+++..+.
T Consensus 469 TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 469 TANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred ecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 555432 222222333589999999998888886654
No 127
>PRK08116 hypothetical protein; Validated
Probab=97.95 E-value=3.4e-05 Score=70.39 Aligned_cols=101 Identities=23% Similarity=0.216 Sum_probs=60.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKT 255 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 255 (390)
..+.++|++|+|||+||..+++..... -..++|++ ..+++..+...+.... ......+.+.+.+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc-----cccHHHHHHHhcCCC-
Confidence 458899999999999999999998654 23345554 4556666655543211 111233445555444
Q ss_pred EEEEEeCCC--CCccccc--ccCCCCC-CCCCcEEEEEecc
Q 042806 256 ILVILDNIW--GNLDFQA--VGIPHGD-DRKGCKVLLTARS 291 (390)
Q Consensus 256 ~LlVlDdv~--~~~~~~~--l~~~l~~-~~~~s~IivTtr~ 291 (390)
||||||+. ...+|.. +...+.. ..++..+|+||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999994 3344432 2222211 1345568888874
No 128
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=0.00034 Score=65.98 Aligned_cols=145 Identities=10% Similarity=0.052 Sum_probs=85.6
Q ss_pred ccc-hhHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcC--------------------CCCeEEEEEe
Q 042806 156 CES-RMSTLNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETEK--------------------LFDQVIFVEV 213 (390)
Q Consensus 156 ~~g-R~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~v 213 (390)
++| .+..++.+...+..++ .....++|+.|+||||+|+.+.+..--.+ |.|.. ++..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~-~i~~ 85 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH-LVAP 85 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE-Eecc
Confidence 455 5666777777777666 45678999999999999999988753221 22211 1111
Q ss_pred -CCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEE
Q 042806 214 -SKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVL 286 (390)
Q Consensus 214 -~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~Ii 286 (390)
+..... +.+..+.+.+. .+++=++|+|+++.. ...+.+...+-.-..++.+|
T Consensus 86 ~~~~i~i---------------------d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 86 DGQSIKK---------------------DQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred ccccCCH---------------------HHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 111111 12222333222 122248999998654 23444544443334566677
Q ss_pred EEecc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHh
Q 042806 287 LTARS-LDVLSRKMDSQQNFSVGVLKEDEAWSLFKKM 322 (390)
Q Consensus 287 vTtr~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~ 322 (390)
++|.+ ..+......-...+++.+++.++..+.+...
T Consensus 145 l~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 145 LLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 77765 3333333444579999999999998888653
No 129
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.95 E-value=4.2e-05 Score=75.02 Aligned_cols=188 Identities=15% Similarity=0.142 Sum_probs=112.4
Q ss_pred CcccccchhHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH-
Q 042806 152 DYEACESRMSTLNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADK- 229 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~- 229 (390)
...+++|-+.-...|.+.+..++ ..-....|+.|+||||+|+.++...--...- ...++..=...+.|...
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~-------~~ePC~~C~~Ck~I~~g~ 86 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGP-------TAEPCGKCISCKEINEGS 86 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCC-------CCCcchhhhhhHhhhcCC
Confidence 34578999999999999988765 4556788999999999999998876432110 00011111111222111
Q ss_pred ----hCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCC--CcccccccCCCCCCCCCcEEE-EEecchhhhhhc
Q 042806 230 ----LGLTLHEESDSGRARSLRNRLK----KEKTILVILDNIWG--NLDFQAVGIPHGDDRKGCKVL-LTARSLDVLSRK 298 (390)
Q Consensus 230 ----l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~s~Ii-vTtr~~~v~~~~ 298 (390)
+..+.......+.++.|.+... .++.=+.|+|.|+- ...|..+...+-.-..+...| .||-...++...
T Consensus 87 ~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 87 LIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred cccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 0000000111223444554443 23424999999974 367777766664444455555 455556665555
Q ss_pred CCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCh
Q 042806 299 MDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLP 347 (390)
Q Consensus 299 ~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 347 (390)
..-...|.++.++.++....+...+.......+ ++....|++..+|..
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAAEGSL 214 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHcCCCh
Confidence 566689999999999998888888863333222 345567777777643
No 130
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=0.00064 Score=63.51 Aligned_cols=177 Identities=12% Similarity=0.049 Sum_probs=96.9
Q ss_pred HHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC-----CC-C
Q 042806 163 LNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGL-----TL-H 235 (390)
Q Consensus 163 ~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~-----~~-~ 235 (390)
...|.+.+..++ ...+.++|+.|+||+++|+.+....--....... .++.+ ...+.+...-.. .. .
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~i~p~~ 83 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ---PCGQC----HSCHLFQAGNHPDFHILEPID 83 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCC----HHHHHHhcCCCCCEEEEcccc
Confidence 455666666655 4678899999999999999998875322111000 00000 000000000000 00 0
Q ss_pred C-CCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecch-hhhhhcCCCcceEec
Q 042806 236 E-ESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARSL-DVLSRKMDSQQNFSV 307 (390)
Q Consensus 236 ~-~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~~-~v~~~~~~~~~~~~l 307 (390)
. .-..+.+..+.+.+. .++.=++|+|+++.. ...+.+...+-.-.+++.+|++|.+. .+.....+-...+.+
T Consensus 84 ~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~ 163 (325)
T PRK06871 84 NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLI 163 (325)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeC
Confidence 0 001122333333332 133358889999754 34455544444444566777777653 444333344569999
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHH
Q 042806 308 GVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVT 352 (390)
Q Consensus 308 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~ 352 (390)
.+++.++..+.+...... + ...+...+..++|.|+.+..
T Consensus 164 ~~~~~~~~~~~L~~~~~~----~--~~~~~~~~~l~~g~p~~A~~ 202 (325)
T PRK06871 164 HPPEEQQALDWLQAQSSA----E--ISEILTALRINYGRPLLALT 202 (325)
T ss_pred CCCCHHHHHHHHHHHhcc----C--hHHHHHHHHHcCCCHHHHHH
Confidence 999999999888876421 1 11245678899999974433
No 131
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.0014 Score=65.75 Aligned_cols=156 Identities=20% Similarity=0.219 Sum_probs=88.3
Q ss_pred ccchhHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042806 156 CESRMSTLNDILDALK------NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADK 229 (390)
Q Consensus 156 ~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~ 229 (390)
=+|-++-.++|++.|. .-+.+++.++||+|+|||+|++.++.....+ | +-+++++-.+..+|-.+=-..
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRRTY 399 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRRTY 399 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhccccccc
Confidence 4566677777877764 2245799999999999999999999998644 4 445666666666643221111
Q ss_pred hCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc---------cccc---------ccCCC---CCCCCCcEEEEE
Q 042806 230 LGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL---------DFQA---------VGIPH---GDDRKGCKVLLT 288 (390)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---------~~~~---------l~~~l---~~~~~~s~IivT 288 (390)
+| .-+...++.+.+. +.++-|++||.++... .+-. +...+ +-.-...-.|.|
T Consensus 400 IG-----amPGrIiQ~mkka--~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaT 472 (782)
T COG0466 400 IG-----AMPGKIIQGMKKA--GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIAT 472 (782)
T ss_pred cc-----cCChHHHHHHHHh--CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEee
Confidence 11 1222333333332 2233799999986321 0100 11111 111112223334
Q ss_pred ecchh-hhhhcCCCcceEecCCCCHHHHHHHHHHhh
Q 042806 289 ARSLD-VLSRKMDSQQNFSVGVLKEDEAWSLFKKMA 323 (390)
Q Consensus 289 tr~~~-v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 323 (390)
+.+-+ ++...++--.+|++.+.+.+|=.++-.+++
T Consensus 473 ANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 473 ANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44333 333234455799999999998777766655
No 132
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00087 Score=62.51 Aligned_cols=174 Identities=16% Similarity=0.115 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcC-----------------CCCeEEEEEeCCCCCHHHH
Q 042806 161 STLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEK-----------------LFDQVIFVEVSKIQDIRKI 222 (390)
Q Consensus 161 ~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~-----------------~f~~~~wv~v~~~~~~~~l 222 (390)
.....+...+..++. ..+.++|+.|+||+++|..+.+..--.+ |.| ..|+.......
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~---- 85 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRT---- 85 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcc----
Confidence 345667777766664 5688999999999999999988753221 111 11221000000
Q ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecc-hhhh
Q 042806 223 QGEIADKLGLTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARS-LDVL 295 (390)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~-~~v~ 295 (390)
+......-..+.+..+.+.+. .++.=++|+|+++.. ..-+.+...+-.-..++.+|++|.+ ..+.
T Consensus 86 --------~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 86 --------GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred --------cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCc
Confidence 000000000112223333332 123359999999754 2333343334333446667777765 4444
Q ss_pred hhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042806 296 SRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
....+-...+.+.+++.+++.+.+.... .+ +..+..++..++|.|+....+.
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~~----~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQG----VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHcC----CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 3334445688999999999988886531 11 1225678999999998765543
No 133
>PRK08181 transposase; Validated
Probab=97.92 E-value=0.00019 Score=65.32 Aligned_cols=104 Identities=19% Similarity=0.115 Sum_probs=57.5
Q ss_pred HHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHH
Q 042806 168 DALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLR 247 (390)
Q Consensus 168 ~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~ 247 (390)
+|+. +..-+.++|++|+|||.|+..+.+..... .+ .+.|+ +..+++..+..... . .....+.
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-g~-~v~f~------~~~~L~~~l~~a~~----~----~~~~~~l 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN-GW-RVLFT------RTTDLVQKLQVARR----E----LQLESAI 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc-CC-ceeee------eHHHHHHHHHHHHh----C----CcHHHHH
Confidence 4554 33458899999999999999999876543 23 34444 34566666543321 1 1122334
Q ss_pred HHHhCCCeEEEEEeCCCCC--cccc--cccCCCCCCCCCcEEEEEecc
Q 042806 248 NRLKKEKTILVILDNIWGN--LDFQ--AVGIPHGDDRKGCKVLLTARS 291 (390)
Q Consensus 248 ~~l~~~~~~LlVlDdv~~~--~~~~--~l~~~l~~~~~~s~IivTtr~ 291 (390)
+.+..- =||||||+... ..+. .+...+.....+..+||||..
T Consensus 163 ~~l~~~--dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 163 AKLDKF--DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred HHHhcC--CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 444432 49999999533 1221 122222111112358888875
No 134
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.92 E-value=0.0006 Score=71.31 Aligned_cols=158 Identities=17% Similarity=0.199 Sum_probs=89.3
Q ss_pred ccccchhHHHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 042806 154 EACESRMSTLNDILDALKN------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~ 227 (390)
...+|.+.-.+.|+++|.. ....++.++|++|+||||+++.++...... | .-+.++...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--Y---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E---EEEEcCCCCCHHHhccchh
Confidence 4578888888888877752 245689999999999999999999876422 3 2233444444433322211
Q ss_pred HHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcc------cccccCCC---------------CCCCCCcEEE
Q 042806 228 DKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNLD------FQAVGIPH---------------GDDRKGCKVL 286 (390)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~------~~~l~~~l---------------~~~~~~s~Ii 286 (390)
...+ .......+.+.. ..... -+++||.++.... ...+...+ +-.-.+.-+|
T Consensus 397 ~~~g-----~~~G~~~~~l~~-~~~~~-~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIG-----SMPGKLIQKMAK-VGVKN-PLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCC-----CCCcHHHHHHHh-cCCCC-CEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 1111 111222222322 11223 4788999964311 11111111 1112345566
Q ss_pred EEecchhhhhhcCCCcceEecCCCCHHHHHHHHHHhh
Q 042806 287 LTARSLDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMA 323 (390)
Q Consensus 287 vTtr~~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 323 (390)
.|+.+..+.....+-...+++.+++.++-.++.+++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 6665544433333444689999999999888877666
No 135
>PHA00729 NTP-binding motif containing protein
Probab=97.89 E-value=0.00014 Score=63.85 Aligned_cols=36 Identities=36% Similarity=0.341 Sum_probs=29.3
Q ss_pred HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 165 DILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.+++.+.......|.|+|.+|+||||||..+.+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455556666667799999999999999999998753
No 136
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.87 E-value=0.0001 Score=72.66 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=82.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKE 253 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (390)
.++-|.++|++|+|||.+|+.+.+..... | +-+..+ .++. .... .....+..+.+.....
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~------~l~~--------~~vG-ese~~l~~~f~~A~~~ 317 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVG------KLFG--------GIVG-ESESRMRQMIRIAEAL 317 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhH------Hhcc--------cccC-hHHHHHHHHHHHHHhc
Confidence 35678999999999999999999987532 2 222221 1110 0000 1112233344444445
Q ss_pred CeEEEEEeCCCCCcc--------------cccccCCCCCCCCCcEEEEEecchhh-hhhcC---CCcceEecCCCCHHHH
Q 042806 254 KTILVILDNIWGNLD--------------FQAVGIPHGDDRKGCKVLLTARSLDV-LSRKM---DSQQNFSVGVLKEDEA 315 (390)
Q Consensus 254 ~~~LlVlDdv~~~~~--------------~~~l~~~l~~~~~~s~IivTtr~~~v-~~~~~---~~~~~~~l~~L~~~ea 315 (390)
.+++|++|+++.... ...+...+.....+.-||.||..... ..... .....+.+..-+.++-
T Consensus 318 ~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR 397 (489)
T CHL00195 318 SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEER 397 (489)
T ss_pred CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHH
Confidence 679999999963210 00011111122334456667765432 11111 2335788998899999
Q ss_pred HHHHHHhhCCCCCCCchHHHHHHHHHHcCCCh
Q 042806 316 WSLFKKMAGDYIEGSEFKWVAKDVARECAGLP 347 (390)
Q Consensus 316 ~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 347 (390)
.++|+.+............-...+++.+.|.-
T Consensus 398 ~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 398 EKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 99998887532111000111346777776654
No 137
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.83 E-value=0.00012 Score=73.36 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=39.4
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...++|.+..+..+...+..+...-+.|+|++|+|||++|+.+++..
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44688999888888888776666667899999999999999998754
No 138
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.00017 Score=65.22 Aligned_cols=82 Identities=21% Similarity=0.280 Sum_probs=54.9
Q ss_pred HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHH
Q 042806 165 DILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRAR 244 (390)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~ 244 (390)
.+.+++. +..-+.++|++|+|||.||..+.+..- +..+. +.|+ +..+++..+...... .....
T Consensus 97 ~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~s-v~f~------~~~el~~~Lk~~~~~-------~~~~~ 159 (254)
T COG1484 97 SLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAGIS-VLFI------TAPDLLSKLKAAFDE-------GRLEE 159 (254)
T ss_pred HHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCe-EEEE------EHHHHHHHHHHHHhc-------CchHH
Confidence 3444444 566788999999999999999999987 43344 3333 556777777666543 12233
Q ss_pred HHHHHHhCCCeEEEEEeCCCC
Q 042806 245 SLRNRLKKEKTILVILDNIWG 265 (390)
Q Consensus 245 ~l~~~l~~~~~~LlVlDdv~~ 265 (390)
.|.+.+..-. ||||||+-.
T Consensus 160 ~l~~~l~~~d--lLIiDDlG~ 178 (254)
T COG1484 160 KLLRELKKVD--LLIIDDIGY 178 (254)
T ss_pred HHHHHhhcCC--EEEEecccC
Confidence 4455454434 999999964
No 139
>PRK10536 hypothetical protein; Provisional
Probab=97.78 E-value=0.00038 Score=62.25 Aligned_cols=55 Identities=22% Similarity=0.201 Sum_probs=41.1
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEE
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVI 209 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~ 209 (390)
...+.+|......++.++.+. .++.+.|++|+|||+||..+..+.-..+.|+.++
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 345677888888888888763 4899999999999999999988643223355333
No 140
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.78 E-value=0.0013 Score=58.75 Aligned_cols=208 Identities=14% Similarity=0.090 Sum_probs=115.5
Q ss_pred cccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCeEEEEEeCCC----------C---
Q 042806 155 ACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEK----LFDQVIFVEVSKI----------Q--- 217 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~----------~--- 217 (390)
.+.++.+..+.+.......+.+-+.++||+|.||.|.+..+.+..-..+ .-+...|.+-+.. +
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 4666766677777766656678888999999999999998888764311 1233444433322 1
Q ss_pred -C-------HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeE-EEEEeCCCCC--cccccccCCCCCCCCCcEEE
Q 042806 218 -D-------IRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTI-LVILDNIWGN--LDFQAVGIPHGDDRKGCKVL 286 (390)
Q Consensus 218 -~-------~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~-LlVlDdv~~~--~~~~~l~~~l~~~~~~s~Ii 286 (390)
+ -+-+.+++++......+-. ...+++| ++|+-.+++. +....+....-...+.+|+|
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qie------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQIE------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcchh------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 0 1112233333322111100 1134445 5666666433 22222332222234567777
Q ss_pred EEecchhhh-hhcCCCcceEecCCCCHHHHHHHHHHhhCC-CCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCCCCC
Q 042806 287 LTARSLDVL-SRKMDSQQNFSVGVLKEDEAWSLFKKMAGD-YIEGSEFKWVAKDVARECAGLPVSIVTVARALGTRDYLN 364 (390)
Q Consensus 287 vTtr~~~v~-~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~~~~~~~ 364 (390)
+...+-+-. .....-.-.+.+...+++|....+...+.. ...-| .+++.+|+++++|.---..++-..++.+....
T Consensus 162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~ 239 (351)
T KOG2035|consen 162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPF 239 (351)
T ss_pred EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccc
Confidence 766542211 111122237788899999999999988852 22223 57899999999987665555555554443322
Q ss_pred Cc-------ccchhHHHHH
Q 042806 365 GR-------THWNSWGGLL 376 (390)
Q Consensus 365 ~~-------~~w~~~~~~l 376 (390)
+. -+|+-+...+
T Consensus 240 ~a~~~~i~~~dWe~~i~e~ 258 (351)
T KOG2035|consen 240 TANSQVIPKPDWEIYIQEI 258 (351)
T ss_pred cccCCCCCCccHHHHHHHH
Confidence 22 3676655443
No 141
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.0016 Score=60.71 Aligned_cols=160 Identities=13% Similarity=0.095 Sum_probs=96.0
Q ss_pred HHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------CCCeEEEEEeC---CCCCH
Q 042806 163 LNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETEK-------------------LFDQVIFVEVS---KIQDI 219 (390)
Q Consensus 163 ~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~v~---~~~~~ 219 (390)
...+...+..++ ...+.++|+.|+||+++|..+....--.+ |.| ..|+.-. ....+
T Consensus 12 ~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~~I~v 90 (319)
T PRK06090 12 WQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKEGKSITV 90 (319)
T ss_pred HHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcCCCcCCH
Confidence 455666666655 45788999999999999999988753211 122 1122110 01111
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecc-h
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARS-L 292 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~-~ 292 (390)
+ .+..+.+.+. .++.=++|+|+++.. ...+.+...+-.-.+++.+|++|.+ .
T Consensus 91 d---------------------qiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~ 149 (319)
T PRK06090 91 E---------------------QIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQK 149 (319)
T ss_pred H---------------------HHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChh
Confidence 1 2223333331 123258899999754 3455554444333455666666655 4
Q ss_pred hhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 293 DVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 293 ~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
.+.....+-...+.+.+++.+++.+.+..... . ....++..++|.|+....+
T Consensus 150 ~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~---~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 150 RLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI---T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hChHHHHhcceeEeCCCCCHHHHHHHHHHcCC---c------hHHHHHHHcCCCHHHHHHH
Confidence 45444445556999999999999988865421 1 1346789999999977655
No 142
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.75 E-value=0.00035 Score=65.88 Aligned_cols=99 Identities=11% Similarity=0.168 Sum_probs=65.7
Q ss_pred HHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe-EEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCchH
Q 042806 165 DILDALKN-PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQ-VIFVEVSK-IQDIRKIQGEIADKLGLTLHEESDSG 241 (390)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~-~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~~~~~~ 241 (390)
++++.+.. ++..-+.|+|++|+|||||++.+.+..... +-+. ++|+.+.. ..++.++++.+...+.....+.+...
T Consensus 122 RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~ 200 (380)
T PRK12608 122 RVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDE 200 (380)
T ss_pred hhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHH
Confidence 46666653 344556899999999999999999987543 3344 46766664 45788999998887765443332221
Q ss_pred ------HHHHHHHHH-hCCCeEEEEEeCCC
Q 042806 242 ------RARSLRNRL-KKEKTILVILDNIW 264 (390)
Q Consensus 242 ------~~~~l~~~l-~~~~~~LlVlDdv~ 264 (390)
.+..+.+++ ..+++.+||+|++.
T Consensus 201 ~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 201 HIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 122333333 34677999999985
No 143
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.75 E-value=0.00033 Score=73.98 Aligned_cols=106 Identities=18% Similarity=0.239 Sum_probs=58.3
Q ss_pred ccccchhHHHHHHHHHhcC-------C-C-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 042806 154 EACESRMSTLNDILDALKN-------P-D-VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQG 224 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~-------~-~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~ 224 (390)
..++|.+..+..+.+.+.. + + ..++.++||+|+|||.||+.+....... ....+-++.+..... .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhh----h
Confidence 4577888888888777631 2 2 3468899999999999999998876322 122222222221111 1
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 042806 225 EIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN 266 (390)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 266 (390)
.+.+-+|........ .....+.+.++.+...+|+||++...
T Consensus 640 ~~~~l~g~~~gyvg~-~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 640 TVSRLKGSPPGYVGY-GEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhccccCCCCCcccc-cccchHHHHHHhCCCcEEEEechhhc
Confidence 111122222111111 01123445555555579999999743
No 144
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.73 E-value=0.00035 Score=73.07 Aligned_cols=102 Identities=18% Similarity=0.235 Sum_probs=57.4
Q ss_pred cccchhHHHHHHHHHhcC-------C-C-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 042806 155 ACESRMSTLNDILDALKN-------P-D-VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGE 225 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~-------~-~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~ 225 (390)
.++|.+..++.+.+.+.. + + ..++.++||+|+|||+||+.++.... ...+.++.+...... .
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~----~ 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH----T 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----c
Confidence 456666666666666542 1 1 23578999999999999999988763 223445544422211 1
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 042806 226 IADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN 266 (390)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 266 (390)
+.+.++....... ......+.+.++.+...+++||+++..
T Consensus 526 ~~~lig~~~gyvg-~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 VSRLIGAPPGYVG-FEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHHhcCCCCCcc-cchhhHHHHHHHhCCCeEEEEechhhc
Confidence 1222222211111 111234555555555479999999744
No 145
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00071 Score=66.50 Aligned_cols=93 Identities=22% Similarity=0.294 Sum_probs=59.3
Q ss_pred cccccchhHHHHHHHHHhc---CC---------CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 042806 153 YEACESRMSTLNDILDALK---NP---------DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIR 220 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~---~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 220 (390)
..++.|-+..+.+|.+.+. .+ .++=+.+|||+|+|||.||+.+.++..+. |+.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch----
Confidence 3456777777777766553 22 35678899999999999999999998754 3333322
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCC
Q 042806 221 KIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWG 265 (390)
Q Consensus 221 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~ 265 (390)
+|.+... . .....+..+...-.+.-+|++++|+++-
T Consensus 258 ----eivSGvS----G-ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ----EIVSGVS----G-ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ----hhhcccC----c-ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 1111111 1 1223444555555555679999999963
No 146
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.69 E-value=0.0004 Score=58.38 Aligned_cols=137 Identities=19% Similarity=0.149 Sum_probs=73.8
Q ss_pred chhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCCC------------------CeEEEEEeCCC--
Q 042806 158 SRMSTLNDILDALKNPDV-NMLGIYGMGGIVKTTLAKEVARKAETEKLF------------------DQVIFVEVSKI-- 216 (390)
Q Consensus 158 gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f------------------~~~~wv~v~~~-- 216 (390)
|-+...+.|.+.+..++. ..+.++|+.|+||+++|..+.+..-..... ....|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 344566777777777664 568999999999999999998875432211 12333332221
Q ss_pred -CCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecchh
Q 042806 217 -QDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARSLD 293 (390)
Q Consensus 217 -~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~~~ 293 (390)
...+++- .+...+..... .++.=++|+|+++.. .....+...+-.-..++.+|++|.+..
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHHH-HHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 2232222 33333322211 122359999999754 445555544434456788888888744
Q ss_pred -hhhhcCCCcceEecCCCC
Q 042806 294 -VLSRKMDSQQNFSVGVLK 311 (390)
Q Consensus 294 -v~~~~~~~~~~~~l~~L~ 311 (390)
+......-...+.+.++|
T Consensus 144 ~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GS-HHHHTTSEEEEE----
T ss_pred HChHHHHhhceEEecCCCC
Confidence 333333334566666654
No 147
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.69 E-value=7.4e-05 Score=63.84 Aligned_cols=75 Identities=28% Similarity=0.383 Sum_probs=45.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKE 253 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (390)
+..-+.++|++|+|||.||..+.+..-.. .+. +.|+ +..+++..+-.. .... ....+.+.+..-
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~~-v~f~------~~~~L~~~l~~~----~~~~----~~~~~~~~l~~~ 109 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK-GYS-VLFI------TASDLLDELKQS----RSDG----SYEELLKRLKRV 109 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT-T---EEEE------EHHHHHHHHHCC----HCCT----THCHHHHHHHTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC-Ccc-eeEe------ecCceecccccc----cccc----chhhhcCccccc
Confidence 34568999999999999999999987653 343 4454 345566655322 1111 122344555554
Q ss_pred CeEEEEEeCCCCC
Q 042806 254 KTILVILDNIWGN 266 (390)
Q Consensus 254 ~~~LlVlDdv~~~ 266 (390)
. ||||||+-..
T Consensus 110 d--lLilDDlG~~ 120 (178)
T PF01695_consen 110 D--LLILDDLGYE 120 (178)
T ss_dssp S--CEEEETCTSS
T ss_pred c--Eeccccccee
Confidence 4 8899999543
No 148
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.0022 Score=60.49 Aligned_cols=165 Identities=13% Similarity=0.051 Sum_probs=96.0
Q ss_pred HHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhc--------------------CCCCeEEEEEeCCCCCHH
Q 042806 162 TLNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETE--------------------KLFDQVIFVEVSKIQDIR 220 (390)
Q Consensus 162 ~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~v~~~~~~~ 220 (390)
.-+++.+.+..++ ...+.++|+.|+||+++|..+....--. .|.|. .++.-....
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~~--- 85 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKGK--- 85 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEeccccc---
Confidence 3456777776655 5678899999999999999988875321 12221 111100000
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecc-hh
Q 042806 221 KIQGEIADKLGLTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARS-LD 293 (390)
Q Consensus 221 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~-~~ 293 (390)
... ..+.+..+.+.+. .+++=++|+|+++.. ..-+.+...+-.-.+++.+|++|.+ ..
T Consensus 86 --------------~~I-~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (334)
T PRK07993 86 --------------SSL-GVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPAR 150 (334)
T ss_pred --------------ccC-CHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 000 1112333333332 133358999998754 3344454444333456666666665 44
Q ss_pred hhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHH
Q 042806 294 VLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIV 351 (390)
Q Consensus 294 v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~ 351 (390)
+.....+-...+.+.+++.+++.+.+....+ . + .+.+..++..++|.|....
T Consensus 151 lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~---~-~--~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 151 LLATLRSRCRLHYLAPPPEQYALTWLSREVT---M-S--QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ChHHHHhccccccCCCCCHHHHHHHHHHccC---C-C--HHHHHHHHHHcCCCHHHHH
Confidence 4443344446889999999999888865431 1 1 2235678999999997543
No 149
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.65 E-value=0.00072 Score=71.86 Aligned_cols=106 Identities=18% Similarity=0.261 Sum_probs=60.5
Q ss_pred ccccchhHHHHHHHHHhcC-------C-C-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 042806 154 EACESRMSTLNDILDALKN-------P-D-VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQG 224 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~-------~-~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~ 224 (390)
..++|.+..++.+...+.. + + ..++.++|++|+|||++|+.+....... -...+.++.+.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch---
Confidence 3578888888888777753 1 1 3467899999999999999999876432 22334444443322111
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 042806 225 EIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN 266 (390)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 266 (390)
+.+.+|..+..... .....+.+.+......+|+||++...
T Consensus 640 -~~~l~g~~~g~~g~-~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 640 -VARLIGAPPGYVGY-EEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred -HHHhcCCCCCccCc-ccccHHHHHHHcCCCcEEEEeccccC
Confidence 11222222111111 01123445554444369999999754
No 150
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.65 E-value=0.00063 Score=71.27 Aligned_cols=172 Identities=15% Similarity=0.167 Sum_probs=93.4
Q ss_pred ccccchhHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 042806 154 EACESRMSTLNDILDALK-------------NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIR 220 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 220 (390)
..+.|.+...+.|.+.+. -..++-+.++|++|+|||+||+.+++..... | +.++. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEeh----H
Confidence 445666655555554432 1234568899999999999999999986532 2 23322 1
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc---------c-----cccccCCCCC--CCCCcE
Q 042806 221 KIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL---------D-----FQAVGIPHGD--DRKGCK 284 (390)
Q Consensus 221 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---------~-----~~~l~~~l~~--~~~~s~ 284 (390)
+++. .. .. .....+..+........+++|+||+++... . ...+...+.. ...+..
T Consensus 522 ~l~~----~~----vG-ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 EILS----KW----VG-ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred HHhh----cc----cC-cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1111 10 00 112234455555555566999999986321 0 1111111211 123455
Q ss_pred EEEEecchhhh-hhcC---CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCh
Q 042806 285 VLLTARSLDVL-SRKM---DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLP 347 (390)
Q Consensus 285 IivTtr~~~v~-~~~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 347 (390)
||.||...... .... .....+.+...+.++-.++|..+........+. -...+++.|.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 66666554322 1111 234688899999998889997766422221211 1346777777654
No 151
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.64 E-value=0.00028 Score=62.04 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=54.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh-CC---C---CCCCCc---hHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL-GL---T---LHEESD---SGRA 243 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l-~~---~---~~~~~~---~~~~ 243 (390)
...++.|+|++|+|||+++.++....... -..++|++... ++...+.+ ++... .. . ....+. ...+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 45789999999999999999998876432 45689998876 66655444 33321 00 0 000111 1224
Q ss_pred HHHHHHHhCCCeEEEEEeCCC
Q 042806 244 RSLRNRLKKEKTILVILDNIW 264 (390)
Q Consensus 244 ~~l~~~l~~~~~~LlVlDdv~ 264 (390)
..+.+.+...+.-+||+|.+.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcH
Confidence 445555555455699999985
No 152
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.64 E-value=0.00033 Score=65.14 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=67.0
Q ss_pred chhHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042806 158 SRMSTLNDILDALKN----PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLT 233 (390)
Q Consensus 158 gR~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~ 233 (390)
+|........+++.. ...+-+.|+|+.|+|||.|+..+++..... .+. +.|+++ .+++..+....+..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~~-v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GVS-STLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCC-EEEEEH------HHHHHHHHHHHhcC
Confidence 444444444455442 235678899999999999999999998643 344 344443 45666666555321
Q ss_pred CCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--ccccc--ccCCC-CCC-CCCcEEEEEec
Q 042806 234 LHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQA--VGIPH-GDD-RKGCKVLLTAR 290 (390)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~--l~~~l-~~~-~~~s~IivTtr 290 (390)
......+.+..- =||||||+-.. ..|.. +...+ ... ..+..+|+||.
T Consensus 207 --------~~~~~l~~l~~~--dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 --------SVKEKIDAVKEA--PVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred --------cHHHHHHHhcCC--CEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 123344445443 49999999533 45543 32222 111 23445777776
No 153
>PRK08118 topology modulation protein; Reviewed
Probab=97.63 E-value=3.2e-05 Score=65.36 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhc-CCCCeEEE
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETE-KLFDQVIF 210 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~-~~f~~~~w 210 (390)
-|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999997654 34666665
No 154
>PRK07261 topology modulation protein; Provisional
Probab=97.63 E-value=0.00027 Score=60.00 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhc-CCCCeEEE
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETE-KLFDQVIF 210 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~-~~f~~~~w 210 (390)
-|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 47899999999999999998775432 12454555
No 155
>PRK04132 replication factor C small subunit; Provisional
Probab=97.61 E-value=0.0019 Score=67.53 Aligned_cols=158 Identities=13% Similarity=0.031 Sum_probs=95.3
Q ss_pred c--CCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEE
Q 042806 182 G--MGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVI 259 (390)
Q Consensus 182 G--~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlV 259 (390)
| |.++||||+|..++++.-..+.-...+-++++....... ++.+.+.+....+. .+.+.-++|
T Consensus 571 G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~~--------------~~~~~KVvI 635 (846)
T PRK04132 571 GNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINV-IREKVKEFARTKPI--------------GGASFKIIF 635 (846)
T ss_pred CCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCCc--------------CCCCCEEEE
Confidence 7 889999999999999873321112466777776555543 33333332211110 011236999
Q ss_pred EeCCCCCc--ccccccCCCCCCCCCcEEEEEecch-hhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHH
Q 042806 260 LDNIWGNL--DFQAVGIPHGDDRKGCKVLLTARSL-DVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVA 336 (390)
Q Consensus 260 lDdv~~~~--~~~~l~~~l~~~~~~s~IivTtr~~-~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~ 336 (390)
+|+++... ..+.+...+-.-...+++|+++.+. .+.....+-...+.+.+++.++..+.+...+......- .++..
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i-~~e~L 714 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-TEEGL 714 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC-CHHHH
Confidence 99998653 4445544443333466777766653 33222233456999999999999888887764211111 14567
Q ss_pred HHHHHHcCCChHHHHHHHH
Q 042806 337 KDVARECAGLPVSIVTVAR 355 (390)
Q Consensus 337 ~~i~~~~~GlPLai~~l~~ 355 (390)
..|++.|+|-+-....+-.
T Consensus 715 ~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 715 QAILYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 8999999998855544433
No 156
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.61 E-value=0.00074 Score=70.77 Aligned_cols=174 Identities=15% Similarity=0.149 Sum_probs=91.4
Q ss_pred cccccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 153 YEACESRMSTLNDILDALKN-------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
...+.|.+..++.+.+.+.- ...+-+.++|++|+|||+|++.+++..... ++.++..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~-------~i~i~~~--- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY-------FISINGP--- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-------EEEEecH---
Confidence 34577888888777666531 234678899999999999999998876421 2222211
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc-------------ccccccCCCCC-CCCCcEE
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL-------------DFQAVGIPHGD-DRKGCKV 285 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~-~~~~s~I 285 (390)
++... . .. .....+..+.+......+.+|+||+++... ....+...+.. ...+..+
T Consensus 247 -~i~~~----~----~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EIMSK----Y----YG-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HHhcc----c----cc-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 11100 0 00 111223333443334455899999985421 01112111111 1223334
Q ss_pred EE-Eecchh-hhhhcC---CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChH
Q 042806 286 LL-TARSLD-VLSRKM---DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPV 348 (390)
Q Consensus 286 iv-Ttr~~~-v~~~~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPL 348 (390)
++ ||.... +..... .....+.+...+.++-.+++...........+ .....+++.+.|..-
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCCH
Confidence 44 454322 211111 12347888888888888888866532211111 124567888877653
No 157
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00067 Score=67.76 Aligned_cols=153 Identities=15% Similarity=0.079 Sum_probs=83.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI--QDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKK 252 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (390)
..-|.|.|+.|+|||+|++.+++... +++.-.+.+++++.- ...+.+.+.+... +.+.+..
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v----------------fse~~~~ 493 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV----------------FSEALWY 493 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHH----------------HHHHHhh
Confidence 46788999999999999999999987 344555666666542 2233333332222 2233333
Q ss_pred CCeEEEEEeCCCCC--------cccc-----------cccCCCCCCCCCcEEEEEecchhhhhh----cCCCcceEecCC
Q 042806 253 EKTILVILDNIWGN--------LDFQ-----------AVGIPHGDDRKGCKVLLTARSLDVLSR----KMDSQQNFSVGV 309 (390)
Q Consensus 253 ~~~~LlVlDdv~~~--------~~~~-----------~l~~~l~~~~~~s~IivTtr~~~v~~~----~~~~~~~~~l~~ 309 (390)
.|-+|||||++.. ..|. ++...+...+....+|.|..+..-... ..-......|..
T Consensus 494 -~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 494 -APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred -CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 3489999999632 1111 111112122222345555554322111 111234778888
Q ss_pred CCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCC
Q 042806 310 LKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGL 346 (390)
Q Consensus 310 L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 346 (390)
+...+-.++++........... ......+..+|+|.
T Consensus 573 p~~~~R~~IL~~~~s~~~~~~~-~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLSDIT-MDDLDFLSVKTEGY 608 (952)
T ss_pred cchhHHHHHHHHHHHhhhhhhh-hHHHHHHHHhcCCc
Confidence 8888877877776642221111 11223367777653
No 158
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0074 Score=60.65 Aligned_cols=156 Identities=20% Similarity=0.199 Sum_probs=87.5
Q ss_pred ccccchhHHHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 042806 154 EACESRMSTLNDILDALKN------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~ 227 (390)
.+=+|.++-.+++++.+.- -+.+++..+||+|||||++++.++.....+ | +-++++.-.+..+|-..=-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhcccce
Confidence 3446777778888887642 357899999999999999999999988643 3 3346677666665432211
Q ss_pred HHhCCCCCCCCchHHHHHHHHHHhC--CCeEEEEEeCCCCCc---------ccccccCC---------CCCCC-CCcEEE
Q 042806 228 DKLGLTLHEESDSGRARSLRNRLKK--EKTILVILDNIWGNL---------DFQAVGIP---------HGDDR-KGCKVL 286 (390)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~~--~~~~LlVlDdv~~~~---------~~~~l~~~---------l~~~~-~~s~Ii 286 (390)
... ..+-.++.++|+. ..+-|+.+|.|+... .+-.+..| +.+.. -=|+|+
T Consensus 486 TYV---------GAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 486 TYV---------GAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred eee---------ccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 111 1112244455542 223688999986431 01111111 10100 113443
Q ss_pred --EEecc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHhh
Q 042806 287 --LTARS-LDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMA 323 (390)
Q Consensus 287 --vTtr~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 323 (390)
.|... ..++....+--..|++.+...+|=.++-++++
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 33332 12222123334688899988888777766655
No 159
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.56 E-value=0.00076 Score=71.50 Aligned_cols=106 Identities=14% Similarity=0.246 Sum_probs=58.2
Q ss_pred ccccchhHHHHHHHHHhcC-------CC--ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 042806 154 EACESRMSTLNDILDALKN-------PD--VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQG 224 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~-------~~--~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~ 224 (390)
..++|.+..+..+...+.. ++ ..++.++|+.|+|||+||+.+.+..... -...+.+..+.... ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~-~~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFME-KH--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhh-hh---
Confidence 3577888877777766642 12 2468899999999999999999876322 12234444433211 11
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 042806 225 EIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN 266 (390)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 266 (390)
.+.+-+|.+...... .....+.+.++....-+|+||++...
T Consensus 642 ~~~~LiG~~pgy~g~-~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 642 SVSRLVGAPPGYVGY-EEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred hHHHHhCCCCccccc-chhHHHHHHHHhCCCCeEEEeehhhC
Confidence 112223322111111 11123444444433369999999743
No 160
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.55 E-value=0.00061 Score=70.80 Aligned_cols=102 Identities=14% Similarity=0.186 Sum_probs=57.1
Q ss_pred cccchhHHHHHHHHHhcC--------CC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 042806 155 ACESRMSTLNDILDALKN--------PD-VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGE 225 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~--------~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~ 225 (390)
.++|-+..++.|.+.+.. ++ ...+.++|++|+|||++|+.+...... ..+.++.+...... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccc----c
Confidence 456777777777776651 12 346889999999999999999887732 12334443322211 1
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 042806 226 IADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN 266 (390)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 266 (390)
+.+-+|.+..... ......+.+.+..+...+|+||+++..
T Consensus 530 ~~~LiG~~~gyvg-~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGYVG-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCccc-ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 2222332211111 011123444454444479999999754
No 161
>PRK06526 transposase; Provisional
Probab=97.55 E-value=0.00011 Score=66.34 Aligned_cols=74 Identities=20% Similarity=0.143 Sum_probs=43.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEK 254 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 254 (390)
...+.|+|++|+|||+||..+.+..... .+. +.| .+..+++..+...... . ........+. +
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~-g~~-v~f------~t~~~l~~~l~~~~~~-------~-~~~~~l~~l~--~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA-GHR-VLF------ATAAQWVARLAAAHHA-------G-RLQAELVKLG--R 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC-CCc-hhh------hhHHHHHHHHHHHHhc-------C-cHHHHHHHhc--c
Confidence 4568899999999999999998876543 233 233 2445555555433210 1 1111222332 2
Q ss_pred eEEEEEeCCCCC
Q 042806 255 TILVILDNIWGN 266 (390)
Q Consensus 255 ~~LlVlDdv~~~ 266 (390)
.-|||+||+...
T Consensus 160 ~dlLIIDD~g~~ 171 (254)
T PRK06526 160 YPLLIVDEVGYI 171 (254)
T ss_pred CCEEEEcccccC
Confidence 258999999643
No 162
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0058 Score=57.58 Aligned_cols=89 Identities=16% Similarity=0.191 Sum_probs=57.0
Q ss_pred EEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCch
Q 042806 256 ILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARS-LDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEF 332 (390)
Q Consensus 256 ~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~-~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~ 332 (390)
=++|+|+++.. ...+.+...+-.-.+++.+|++|.+ ..+.....+-...+.+.+++.++..+.+...- . ++
T Consensus 134 kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~--~~- 207 (342)
T PRK06964 134 RVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V--AD- 207 (342)
T ss_pred eEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--Ch-
Confidence 58889999754 4455555555444456656655555 55544334444699999999999998887652 1 11
Q ss_pred HHHHHHHHHHcCCChHHHHHH
Q 042806 333 KWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 333 ~~~~~~i~~~~~GlPLai~~l 353 (390)
...++..++|.|+....+
T Consensus 208 ---~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 208 ---ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ---HHHHHHHcCCCHHHHHHH
Confidence 123678889999755433
No 163
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.54 E-value=0.00071 Score=62.33 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=49.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETE-KLFDQVIFVEVSKIQ-DIRKIQGEIADKLGLTLHEESDSGRARSLRNRLK 251 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~-~~f~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 251 (390)
+.+++.++|++|+||||++..+......+ +.+ .+..++..... ...+-+......++...........+....+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc
Confidence 45799999999999999999998877543 223 35555554321 2233334445555554433222223334444443
Q ss_pred CCCeEEEEEeCC
Q 042806 252 KEKTILVILDNI 263 (390)
Q Consensus 252 ~~~~~LlVlDdv 263 (390)
+. =+|++|..
T Consensus 272 ~~--d~vliDt~ 281 (282)
T TIGR03499 272 DK--DLILIDTA 281 (282)
T ss_pred CC--CEEEEeCC
Confidence 32 37777753
No 164
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.54 E-value=0.001 Score=60.92 Aligned_cols=168 Identities=18% Similarity=0.156 Sum_probs=99.8
Q ss_pred ccccchhHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC-eEEEEEeCCCCCH-HHHHHHHH
Q 042806 154 EACESRMSTLNDILDALKN----PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFD-QVIFVEVSKIQDI-RKIQGEIA 227 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~-~~l~~~i~ 227 (390)
..++|-.++...+-+++.. +...-+.|+||.|+|||+|......+.+. |. ...-|...+.... .-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~---~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQE---NGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHh---cCCeEEEEEECccchhhHHHHHHHH
Confidence 3578888888888777763 44556779999999999999988888221 32 3445555554433 22455565
Q ss_pred HHhCCCCC-----CCCchHHHHHHHHHHhC-----CCeEEEEEeCCCCCcc-------cccccCCCCCCCCCcEEEEEec
Q 042806 228 DKLGLTLH-----EESDSGRARSLRNRLKK-----EKTILVILDNIWGNLD-------FQAVGIPHGDDRKGCKVLLTAR 290 (390)
Q Consensus 228 ~~l~~~~~-----~~~~~~~~~~l~~~l~~-----~~~~LlVlDdv~~~~~-------~~~l~~~l~~~~~~s~IivTtr 290 (390)
+++..... ..+-.+....+...|.. +-++++|+|.++-... +..+-..-....|-|-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 55543221 12334455566666653 3348999998853311 1111111112456677889999
Q ss_pred chhhh------hhcCCCcceEecCCCCHHHHHHHHHHhhC
Q 042806 291 SLDVL------SRKMDSQQNFSVGVLKEDEAWSLFKKMAG 324 (390)
Q Consensus 291 ~~~v~------~~~~~~~~~~~l~~L~~~ea~~lf~~~~~ 324 (390)
-.... ...+.-..++-+.+++.++-..++++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 53221 11222223555677888999999998873
No 165
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.54 E-value=0.004 Score=58.44 Aligned_cols=29 Identities=28% Similarity=0.243 Sum_probs=25.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
..+..+.|||++|.|||.+|+.+++....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 34678999999999999999999999865
No 166
>PRK12377 putative replication protein; Provisional
Probab=97.52 E-value=0.00046 Score=62.02 Aligned_cols=73 Identities=21% Similarity=0.213 Sum_probs=47.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEK 254 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 254 (390)
...+.++|++|+|||+||..+++..... ...++++++ .+++..+-...... .....+.+.+..-
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~------~~l~~~l~~~~~~~-------~~~~~~l~~l~~~- 164 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTV------PDVMSRLHESYDNG-------QSGEKFLQELCKV- 164 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEH------HHHHHHHHHHHhcc-------chHHHHHHHhcCC-
Confidence 4678899999999999999999998653 223455543 45666554443211 0122344555443
Q ss_pred eEEEEEeCCC
Q 042806 255 TILVILDNIW 264 (390)
Q Consensus 255 ~~LlVlDdv~ 264 (390)
=||||||+.
T Consensus 165 -dLLiIDDlg 173 (248)
T PRK12377 165 -DLLVLDEIG 173 (248)
T ss_pred -CEEEEcCCC
Confidence 499999994
No 167
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.52 E-value=0.00062 Score=60.96 Aligned_cols=90 Identities=20% Similarity=0.258 Sum_probs=57.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CCc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKL----FDQVIFVEVSKIQDIRKIQGEIADKLGLTLHE----------ESD 239 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~----------~~~ 239 (390)
...++.|+|++|+|||+|+.+++........ -..++|++....++...+ .++++.++..... .+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCH
Confidence 4578999999999999999999865332211 257899988887766544 3344444332111 011
Q ss_pred ---hHHHHHHHHHHhCC-CeEEEEEeCCC
Q 042806 240 ---SGRARSLRNRLKKE-KTILVILDNIW 264 (390)
Q Consensus 240 ---~~~~~~l~~~l~~~-~~~LlVlDdv~ 264 (390)
......+.+.+... +.-+||+|.+.
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 12334455555555 66899999985
No 168
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.52 E-value=0.00014 Score=64.64 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEV 213 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v 213 (390)
-.++|.|.+|+|||||+..+...... .|.++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~--~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH--KFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc--cCCEEEEEec
Confidence 35779999999999999999988764 4877766543
No 169
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.50 E-value=0.00035 Score=69.92 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=55.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKE 253 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (390)
..+++.++|++|.||||||..++...+ |. ++=|++|...+...+-..|...+....... .+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Ys-VvEINASDeRt~~~v~~kI~~avq~~s~l~-------------ads 386 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----YS-VVEINASDERTAPMVKEKIENAVQNHSVLD-------------ADS 386 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----ce-EEEecccccccHHHHHHHHHHHHhhccccc-------------cCC
Confidence 468999999999999999999998875 42 778899998888777766655553221110 135
Q ss_pred CeEEEEEeCCCCC
Q 042806 254 KTILVILDNIWGN 266 (390)
Q Consensus 254 ~~~LlVlDdv~~~ 266 (390)
+|.-||+|.++..
T Consensus 387 rP~CLViDEIDGa 399 (877)
T KOG1969|consen 387 RPVCLVIDEIDGA 399 (877)
T ss_pred CcceEEEecccCC
Confidence 7788999999754
No 170
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.01 Score=61.11 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=63.1
Q ss_pred cccchhHHHHHHHHHhcC-------CC--ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 042806 155 ACESRMSTLNDILDALKN-------PD--VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGE 225 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~-------~~--~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~ 225 (390)
.++|-+..+..+.+.+.. ++ ..+....||.|||||-||+.++...-..+ +..+-+ ++.+....
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~------DMSEy~Ek 563 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRI------DMSEYMEK 563 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceee------chHHHHHH
Confidence 577888888888777652 22 34677799999999999999999874321 222222 55554432
Q ss_pred -HHHHhCCCCCC-CCchHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 042806 226 -IADKLGLTLHE-ESDSGRARSLRNRLKKEKTILVILDNIWGN 266 (390)
Q Consensus 226 -i~~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 266 (390)
-.+.|-..++. ....+ -..|.+.++.+...+|.||+|...
T Consensus 564 HsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhc
Confidence 23344333222 22111 345667776654359999999743
No 171
>PRK06921 hypothetical protein; Provisional
Probab=97.47 E-value=0.00082 Score=61.26 Aligned_cols=72 Identities=22% Similarity=0.328 Sum_probs=44.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKE 253 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (390)
....+.++|+.|+|||+|+..+++....+..+ .++|+.. .+++..+...+ .......+.+..-
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~-~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~~~~ 178 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGV-PVLYFPF------VEGFGDLKDDF----------DLLEAKLNRMKKV 178 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCc-eEEEEEH------HHHHHHHHHHH----------HHHHHHHHHhcCC
Confidence 45678999999999999999999987543123 3455553 34444443322 0112233344332
Q ss_pred CeEEEEEeCCC
Q 042806 254 KTILVILDNIW 264 (390)
Q Consensus 254 ~~~LlVlDdv~ 264 (390)
=||||||+.
T Consensus 179 --dlLiIDDl~ 187 (266)
T PRK06921 179 --EVLFIDDLF 187 (266)
T ss_pred --CEEEEeccc
Confidence 499999993
No 172
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.46 E-value=0.00085 Score=58.23 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=53.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCC----CCchHHHHHHHHH
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI-QDIRKIQGEIADKLGLTLHE----ESDSGRARSLRNR 249 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~~----~~~~~~~~~l~~~ 249 (390)
+++|.++|+.|+||||.+..++.....+ -..+..++.... ....+-++..++.++.+... .+.........+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4789999999999999999888887654 334666666533 34555677778888865321 1233334333344
Q ss_pred HhCCCeEEEEEeCC
Q 042806 250 LKKEKTILVILDNI 263 (390)
Q Consensus 250 l~~~~~~LlVlDdv 263 (390)
+..++.=++++|-.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 43323137777765
No 173
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.0016 Score=61.28 Aligned_cols=140 Identities=17% Similarity=0.117 Sum_probs=79.1
Q ss_pred ccchhHHHHHHHHHhc-CCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------CCCeEEEEEeC
Q 042806 156 CESRMSTLNDILDALK-NPDVN-MLGIYGMGGIVKTTLAKEVARKAETEK-------------------LFDQVIFVEVS 214 (390)
Q Consensus 156 ~~gR~~~~~~l~~~L~-~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~v~ 214 (390)
+++-+....++..+.. .++.+ .+.++|++|+||||+|..+.+...... .......++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 3455566667777766 34444 499999999999999999999875322 11234444444
Q ss_pred CCCC---HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc--ccccccCCCCCCCCCcEEEEEe
Q 042806 215 KIQD---IRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL--DFQAVGIPHGDDRKGCKVLLTA 289 (390)
Q Consensus 215 ~~~~---~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~IivTt 289 (390)
.... ..+..+++.+....... .++.-++++|+++... .-..+...+-.-...+.+|++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 4433 34444444444433221 1233699999997542 2333333333344566777777
Q ss_pred cc-hhhhhhcCCCcceEecCCCC
Q 042806 290 RS-LDVLSRKMDSQQNFSVGVLK 311 (390)
Q Consensus 290 r~-~~v~~~~~~~~~~~~l~~L~ 311 (390)
.. ..+......-...+++.+.+
T Consensus 147 n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred CChhhccchhhhcceeeecCCch
Confidence 74 33333223334566676633
No 174
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.43 E-value=0.013 Score=55.13 Aligned_cols=40 Identities=20% Similarity=0.391 Sum_probs=32.1
Q ss_pred HHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 163 LNDILDALKN---PDVNMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 163 ~~~l~~~L~~---~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
.+.|.+.+.+ +.+.+|+|.|+=|+||||+.+.+.+.....
T Consensus 5 a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 5 AKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4455555554 457899999999999999999999998765
No 175
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0022 Score=65.45 Aligned_cols=172 Identities=20% Similarity=0.196 Sum_probs=104.4
Q ss_pred hHHHHHHHHHhcCCC---------ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042806 160 MSTLNDILDALKNPD---------VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL 230 (390)
Q Consensus 160 ~~~~~~l~~~L~~~~---------~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l 230 (390)
..|+.++++.|.++. ++=+.++||+|.|||-||+.++-...+. |++++.. ++. ..+
T Consensus 320 K~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS----EFv----E~~ 384 (774)
T KOG0731|consen 320 KEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS----EFV----EMF 384 (774)
T ss_pred HHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH----HHH----HHh
Confidence 467778888888742 5668899999999999999998887653 4555542 111 111
Q ss_pred CCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc-----------------ccccccCCCCC--CCCCcEEEEEecc
Q 042806 231 GLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL-----------------DFQAVGIPHGD--DRKGCKVLLTARS 291 (390)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~-----------------~~~~l~~~l~~--~~~~s~IivTtr~ 291 (390)
.. .....+..+....+...|+++.+|+++... .++.+...+.. ...+.-++.+|+.
T Consensus 385 ~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr 459 (774)
T KOG0731|consen 385 VG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNR 459 (774)
T ss_pred cc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCC
Confidence 11 112345556666666667999999886331 12222211111 1233445555555
Q ss_pred hhhhhh-cC---CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHH
Q 042806 292 LDVLSR-KM---DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVT 352 (390)
Q Consensus 292 ~~v~~~-~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~ 352 (390)
.++... .+ ...+.+.++.-+.....++|..++.......+..++.+ |+..+-|++=|...
T Consensus 460 ~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gadl~ 523 (774)
T KOG0731|consen 460 PDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGADLA 523 (774)
T ss_pred ccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHHHH
Confidence 544321 11 23357888888888899999988864333344455666 88888888866543
No 176
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.42 E-value=0.0016 Score=58.43 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=48.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEK 254 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 254 (390)
...+.++|.+|+|||+|+..+++..... -..++++ +..+++..+...+.. .. .....+.+.+..-
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~i------t~~~l~~~l~~~~~~--~~----~~~~~~l~~l~~~- 163 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLII------TVADIMSAMKDTFSN--SE----TSEEQLLNDLSNV- 163 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEE------EHHHHHHHHHHHHhh--cc----ccHHHHHHHhccC-
Confidence 3578899999999999999999998653 2344555 345666655544421 11 1122344555532
Q ss_pred eEEEEEeCCCCC
Q 042806 255 TILVILDNIWGN 266 (390)
Q Consensus 255 ~~LlVlDdv~~~ 266 (390)
=||||||+...
T Consensus 164 -dlLvIDDig~~ 174 (244)
T PRK07952 164 -DLLVIDEIGVQ 174 (244)
T ss_pred -CEEEEeCCCCC
Confidence 48899999643
No 177
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0012 Score=62.73 Aligned_cols=89 Identities=18% Similarity=0.223 Sum_probs=53.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK-IQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKK 252 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (390)
+..++.++|+.|+||||++..+......+.....+.++.... .....+-++...+.++..................+.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 357899999999999999999998764331223455555433 2344555666666776654333222222333344444
Q ss_pred CCeEEEEEeCCC
Q 042806 253 EKTILVILDNIW 264 (390)
Q Consensus 253 ~~~~LlVlDdv~ 264 (390)
. -++++|..-
T Consensus 216 ~--DlVLIDTaG 225 (374)
T PRK14722 216 K--HMVLIDTIG 225 (374)
T ss_pred C--CEEEEcCCC
Confidence 3 366788874
No 178
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.41 E-value=0.00051 Score=63.89 Aligned_cols=85 Identities=19% Similarity=0.268 Sum_probs=54.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCchHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLH------EESDSGRARSLR 247 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~ 247 (390)
..+++.|+|++|+|||||+.++....... -..++|++....++.. .+..++.+.+ ..........+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 56799999999999999999988776543 2456788776655542 3455554321 112233344444
Q ss_pred HHHhCCCeEEEEEeCCCC
Q 042806 248 NRLKKEKTILVILDNIWG 265 (390)
Q Consensus 248 ~~l~~~~~~LlVlDdv~~ 265 (390)
..++.+..-++|+|.+..
T Consensus 127 ~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHhhccCCcEEEEcchhh
Confidence 445555557999999853
No 179
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.41 E-value=0.0012 Score=58.36 Aligned_cols=170 Identities=18% Similarity=0.273 Sum_probs=99.5
Q ss_pred ccccchhHHH---HHHHHHhcCC------CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 042806 154 EACESRMSTL---NDILDALKNP------DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQG 224 (390)
Q Consensus 154 ~~~~gR~~~~---~~l~~~L~~~------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~ 224 (390)
++++|.+... .-|++.|.++ .++-|..+|++|.|||-+|+.+.+..++. | +.+.. .+++.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vka----t~liG 189 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVKA----TELIG 189 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEech----HHHHH
Confidence 4566765443 3456667664 37889999999999999999999988753 2 22211 12221
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--------------cccccccCCCC--CCCCCcEEEEE
Q 042806 225 EIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--------------LDFQAVGIPHG--DDRKGCKVLLT 288 (390)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--------------~~~~~l~~~l~--~~~~~s~IivT 288 (390)
+ ..| +....+..+.+....--+|++.+|.++.. +..+.+.-.+. ..+.|...|..
T Consensus 190 e---hVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 190 E---HVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred H---Hhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 1 111 22234455555555556799999998532 11122211111 13456666777
Q ss_pred ecchhhhhhcC--CCcceEecCCCCHHHHHHHHHHhhC--CCCCCCchHHHHHHHHHHcCCCh
Q 042806 289 ARSLDVLSRKM--DSQQNFSVGVLKEDEAWSLFKKMAG--DYIEGSEFKWVAKDVARECAGLP 347 (390)
Q Consensus 289 tr~~~v~~~~~--~~~~~~~l~~L~~~ea~~lf~~~~~--~~~~~~~~~~~~~~i~~~~~GlP 347 (390)
|.+........ .....|+...-+++|-.++++..+. .-..... .+.++++.+|+.
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~S 319 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGMS 319 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCCC
Confidence 76655432211 2234777778888999999998884 2222222 346777777653
No 180
>PRK09183 transposase/IS protein; Provisional
Probab=97.40 E-value=0.00044 Score=62.85 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
...+.|+|++|+|||+|+..+.+....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 456779999999999999999877543
No 181
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.012 Score=56.24 Aligned_cols=154 Identities=13% Similarity=0.125 Sum_probs=83.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKT 255 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 255 (390)
|=-.++||+|.||||++..++|.+. |+..- +..+...+-.+ ++.++ ..- ..+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~~n~d-Lr~LL--------------------~~t--~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVKLDSD-LRHLL--------------------LAT--PNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeeccccCcHH-HHHHH--------------------HhC--CCC
Confidence 5577999999999999999999885 55321 22222111111 22221 111 223
Q ss_pred EEEEEeCCCCCcc-----------cc---------cccCC---CCCCCCCcEEE-EEecchhhh-hhcCC---CcceEec
Q 042806 256 ILVILDNIWGNLD-----------FQ---------AVGIP---HGDDRKGCKVL-LTARSLDVL-SRKMD---SQQNFSV 307 (390)
Q Consensus 256 ~LlVlDdv~~~~~-----------~~---------~l~~~---l~~~~~~s~Ii-vTtr~~~v~-~~~~~---~~~~~~l 307 (390)
-+||+.|++...+ .+ -|... +.+++.+-||| .||...+-. +..+. ....+++
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 7888888863211 11 01111 11222233555 555543321 11222 2247888
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCC
Q 042806 308 GVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARALGTRD 361 (390)
Q Consensus 308 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~~~~ 361 (390)
.--+++....|+.+..+...+. .+..+|.+.-.|.-+.=..++..|-.+.
T Consensus 368 gyCtf~~fK~La~nYL~~~~~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEEDH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCCCc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 8999999999999988643322 2445566666666666666766554443
No 182
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.37 E-value=0.00058 Score=63.58 Aligned_cols=84 Identities=23% Similarity=0.285 Sum_probs=54.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCchHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLH------EESDSGRARSLR 247 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~ 247 (390)
..+++-|+|++|+|||||+.+++...... -..++|++....+++. .+..++.+.+ ..+..+....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 46789999999999999999988776433 3457888887766643 3444443211 112233344444
Q ss_pred HHHhCCCeEEEEEeCCC
Q 042806 248 NRLKKEKTILVILDNIW 264 (390)
Q Consensus 248 ~~l~~~~~~LlVlDdv~ 264 (390)
..+..+..-++|+|.+.
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 44455555799999985
No 183
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00062 Score=65.86 Aligned_cols=88 Identities=25% Similarity=0.253 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHhcCCC---------ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042806 159 RMSTLNDILDALKNPD---------VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADK 229 (390)
Q Consensus 159 R~~~~~~l~~~L~~~~---------~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~ 229 (390)
-..|++++++.|.++. ++=|.++||+|.|||-||+.++-...+. +|.+.+..|+.- + -.
T Consensus 312 AK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP------FF~~sGSEFdEm--~----VG 379 (752)
T KOG0734|consen 312 AKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP------FFYASGSEFDEM--F----VG 379 (752)
T ss_pred HHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC------eEeccccchhhh--h----hc
Confidence 4578899999998742 5678899999999999999998877653 344444444321 1 11
Q ss_pred hCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 042806 230 LGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN 266 (390)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 266 (390)
--...+..|...-+..-||+|.+|.++..
T Consensus 380 --------vGArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 380 --------VGARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred --------ccHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 11234455555556666899999999743
No 184
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0075 Score=58.59 Aligned_cols=143 Identities=20% Similarity=0.298 Sum_probs=80.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHH----HHH
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLR----NRL 250 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~----~~l 250 (390)
...+.+.|++|+|||+||..++.... |..+--+ | ++++. |. +.......+. ..-
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKii--S----pe~mi-------G~-----sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSD----FPFVKII--S----PEDMI-------GL-----SESAKCAHIKKIFEDAY 595 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEe--C----hHHcc-------Cc-----cHHHHHHHHHHHHHHhh
Confidence 55677899999999999999987653 6432221 1 12110 00 1111111222 222
Q ss_pred hCCCeEEEEEeCCCCCcccccccCCCC---------------CCCCCcEEEEEecchhhhhhcCC----CcceEecCCCC
Q 042806 251 KKEKTILVILDNIWGNLDFQAVGIPHG---------------DDRKGCKVLLTARSLDVLSRKMD----SQQNFSVGVLK 311 (390)
Q Consensus 251 ~~~~~~LlVlDdv~~~~~~~~l~~~l~---------------~~~~~s~IivTtr~~~v~~~~~~----~~~~~~l~~L~ 311 (390)
++.- -.||+||+....+|-.++..|. ..+...-|+-||....+... ++ ....|++..++
T Consensus 596 kS~l-siivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~-m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPL-SIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQE-MGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcc-eEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHH-cCHHHhhhheeecCccC
Confidence 3333 6999999987777666554331 12223345556665666432 22 23588898888
Q ss_pred H-HHHHHHHHHhhCCCCCCCchHHHHHHHHHHc
Q 042806 312 E-DEAWSLFKKMAGDYIEGSEFKWVAKDVAREC 343 (390)
Q Consensus 312 ~-~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~ 343 (390)
. ++..+.++..- ...+.+.+.++.+...+|
T Consensus 674 ~~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 7 77777776543 112334455566666666
No 185
>PRK09354 recA recombinase A; Provisional
Probab=97.35 E-value=0.00072 Score=63.46 Aligned_cols=85 Identities=20% Similarity=0.269 Sum_probs=56.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCchHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLH------EESDSGRARSLR 247 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~ 247 (390)
.-+++-|+|++|+|||||+.+++...... =..++|+.....++.. .++.++.+.+ ..+.......+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 46789999999999999999998776543 3457898887766652 3455554321 112233344444
Q ss_pred HHHhCCCeEEEEEeCCCC
Q 042806 248 NRLKKEKTILVILDNIWG 265 (390)
Q Consensus 248 ~~l~~~~~~LlVlDdv~~ 265 (390)
..++.+..-+||+|.|..
T Consensus 132 ~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHhhcCCCCEEEEeChhh
Confidence 455555657999999853
No 186
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.34 E-value=0.0025 Score=60.32 Aligned_cols=99 Identities=21% Similarity=0.225 Sum_probs=55.8
Q ss_pred HHHHHHHhcCC----CccEEEEEcCCCCcHH-HHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCC
Q 042806 163 LNDILDALKNP----DVNMLGIYGMGGIVKT-TLAKEVARKAETEKLFDQVIFVEVSKI-QDIRKIQGEIADKLGLTLHE 236 (390)
Q Consensus 163 ~~~l~~~L~~~----~~~vi~I~G~~GvGKT-tLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~~ 236 (390)
...+..++.++ +.++|+++||.||||| |||+..+......+.. .+..|+.... .-..+=++.-++.++.+...
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~-kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKK-KVAIITTDTYRIGAVEQLKTYADIMGVPLEV 265 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCc-ceEEEEeccchhhHHHHHHHHHHHhCCceEE
Confidence 33444444443 4799999999999999 5566555554222223 3555555433 23344455667777776554
Q ss_pred CCchHHHHHHHHHHhCCCeEEEEEeCCC
Q 042806 237 ESDSGRARSLRNRLKKEKTILVILDNIW 264 (390)
Q Consensus 237 ~~~~~~~~~l~~~l~~~~~~LlVlDdv~ 264 (390)
.........-...+.+.. +|.+|-+-
T Consensus 266 v~~~~el~~ai~~l~~~d--~ILVDTaG 291 (407)
T COG1419 266 VYSPKELAEAIEALRDCD--VILVDTAG 291 (407)
T ss_pred ecCHHHHHHHHHHhhcCC--EEEEeCCC
Confidence 433334444444454433 66667653
No 187
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.32 E-value=0.014 Score=58.67 Aligned_cols=203 Identities=18% Similarity=0.158 Sum_probs=125.2
Q ss_pred cccccchhHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhhh---cCCCCe--EEEEEeCCCCCHHHH
Q 042806 153 YEACESRMSTLNDILDALKN-----PDVNMLGIYGMGGIVKTTLAKEVARKAET---EKLFDQ--VIFVEVSKIQDIRKI 222 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~---~~~f~~--~~wv~v~~~~~~~~l 222 (390)
+..+.+|+.+..+|-..+.. +....+-|.|.+|+|||..+..|.+.+.. ++.-.. .+.|+.-.-..+.++
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREI 474 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHH
Confidence 34578899999988877653 23458889999999999999999997652 222222 334444455679999
Q ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCCcc--cccccCCCC-CCCCCcEEEEEe-cc-hh
Q 042806 223 QGEIADKLGLTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGNLD--FQAVGIPHG-DDRKGCKVLLTA-RS-LD 293 (390)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~~--~~~l~~~l~-~~~~~s~IivTt-r~-~~ 293 (390)
+..|...+...... ....+..|..++. .++++++++|+++..-. -+-+...|. ...++|+++|-+ -+ -.
T Consensus 475 Y~~I~~~lsg~~~~--~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmd 552 (767)
T KOG1514|consen 475 YEKIWEALSGERVT--WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMD 552 (767)
T ss_pred HHHHHHhcccCccc--HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccccc
Confidence 99999998754332 2223445555554 24558999998853311 111111111 134556544433 22 11
Q ss_pred hhhhc-------CCCcceEecCCCCHHHHHHHHHHhhC--CCCCCCchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042806 294 VLSRK-------MDSQQNFSVGVLKEDEAWSLFKKMAG--DYIEGSEFKWVAKDVARECAGLPVSIVTVARAL 357 (390)
Q Consensus 294 v~~~~-------~~~~~~~~l~~L~~~ea~~lf~~~~~--~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L 357 (390)
.+... .-+...+...|.+.++-.++...++. ........+-++++++...|-.-.|+...-+..
T Consensus 553 lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 553 LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 11111 12346888999999999999888775 233344455577888888887777777664443
No 188
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.31 E-value=0.00022 Score=56.67 Aligned_cols=24 Identities=42% Similarity=0.443 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+|.|.|++|+||||+|+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998763
No 189
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.31 E-value=0.0013 Score=61.98 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=58.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc---CC-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC----------Cc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETE---KL-FDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE----------SD 239 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~---~~-f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~----------~~ 239 (390)
...++-|+|++|+|||+|+.+++-..... +. -..++||+....|+++.+.. +++.++.+.... +.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 45788899999999999999987543221 11 24689999999989887654 566676543211 11
Q ss_pred h---HHHHHHHHHHhCCCeEEEEEeCCC
Q 042806 240 S---GRARSLRNRLKKEKTILVILDNIW 264 (390)
Q Consensus 240 ~---~~~~~l~~~l~~~~~~LlVlDdv~ 264 (390)
. ..+..+...+...+.-|||+|.+.
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 1 122333344444454699999985
No 190
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.29 E-value=0.0024 Score=65.65 Aligned_cols=149 Identities=20% Similarity=0.237 Sum_probs=78.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEK 254 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 254 (390)
.+-+.|+|++|+|||++++.+....... | +.++.. ++.. + ..+ ........+........
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~--f-----~~is~~----~~~~-~--~~g------~~~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVP--F-----FTISGS----DFVE-M--FVG------VGASRVRDMFEQAKKAA 244 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCC--E-----EEEehH----HhHH-h--hhc------ccHHHHHHHHHHHHhcC
Confidence 3458899999999999999998876532 2 222211 1111 0 000 01112233333344456
Q ss_pred eEEEEEeCCCCCcc----------------cccccCCCC--CCCCCcEEEEEecchhhhh-hcC---CCcceEecCCCCH
Q 042806 255 TILVILDNIWGNLD----------------FQAVGIPHG--DDRKGCKVLLTARSLDVLS-RKM---DSQQNFSVGVLKE 312 (390)
Q Consensus 255 ~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~~s~IivTtr~~~v~~-~~~---~~~~~~~l~~L~~ 312 (390)
+++|++|+++.... ...+...+. ..+.+.-+|.||....... ... ...+.+.+...+.
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 69999999964310 111111111 1233455666776544321 111 2346788888888
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC
Q 042806 313 DEAWSLFKKMAGDYIEGSEFKWVAKDVARECAG 345 (390)
Q Consensus 313 ~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G 345 (390)
++-.+++..+.......++.. ...+++.+.|
T Consensus 325 ~~R~~Il~~~~~~~~l~~~~d--~~~la~~t~G 355 (644)
T PRK10733 325 RGREQILKVHMRRVPLAPDID--AAIIARGTPG 355 (644)
T ss_pred HHHHHHHHHHhhcCCCCCcCC--HHHHHhhCCC
Confidence 888888887775322212111 2346666655
No 191
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.27 E-value=0.00085 Score=71.06 Aligned_cols=131 Identities=17% Similarity=0.182 Sum_probs=69.9
Q ss_pred ccccchhHHHHHHHHHhcC-------CC--ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 042806 154 EACESRMSTLNDILDALKN-------PD--VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQG 224 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~-------~~--~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~ 224 (390)
..++|.+..+..+...+.. ++ ...+.++||.|+|||+||+.+.+..-.. -...+-++.+.......+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH--
Confidence 4577877777777776642 22 2356789999999999999999876321 122334444432221111
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCCC-----------CCCcEEEEEecc
Q 042806 225 EIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGDD-----------RKGCKVLLTARS 291 (390)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~-----------~~~s~IivTtr~ 291 (390)
.+-+|.+..... ......+.+.+..+...+++||+++.. ..++.+...+..+ ...+.||+||..
T Consensus 585 --~~l~g~~~gyvg-~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 585 --SKLIGSPPGYVG-YNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred --HHhcCCCCcccC-cCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 111222111111 111224556665555469999999744 2333333222211 245667777764
No 192
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.27 E-value=0.0028 Score=56.32 Aligned_cols=91 Identities=18% Similarity=0.242 Sum_probs=54.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEK----LFDQVIFVEVSKIQDIRKIQGEIADKLGLTLH----------EESD 239 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~----------~~~~ 239 (390)
...++.|+|++|+|||+|+.+++......+ .=..++|+.....++...+. .++...+.... ..+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCH
Confidence 457899999999999999999987653221 01457898887776665443 33343322111 0122
Q ss_pred hHHHHHHHHHH---hCCCeEEEEEeCCCC
Q 042806 240 SGRARSLRNRL---KKEKTILVILDNIWG 265 (390)
Q Consensus 240 ~~~~~~l~~~l---~~~~~~LlVlDdv~~ 265 (390)
......+.... ...+.-|+|+|.+..
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 22333333332 244556999999853
No 193
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.27 E-value=0.0013 Score=61.25 Aligned_cols=90 Identities=18% Similarity=0.257 Sum_probs=58.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc----CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC----------Cc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETE----KLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE----------SD 239 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~----~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~----------~~ 239 (390)
..+++-|+|++|+|||+|+.+++-..... ..=..++|++....++++.+. +++..++.+.+.. +.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCH
Confidence 45788899999999999999987543211 112368999999888887764 4567776543211 11
Q ss_pred h---HHHHHHHHHHhCCCeEEEEEeCCC
Q 042806 240 S---GRARSLRNRLKKEKTILVILDNIW 264 (390)
Q Consensus 240 ~---~~~~~l~~~l~~~~~~LlVlDdv~ 264 (390)
. ..+..+...+...+.-|||+|.+.
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 1 223334444544454689999985
No 194
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0034 Score=61.91 Aligned_cols=131 Identities=19% Similarity=0.265 Sum_probs=81.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKE 253 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (390)
.+.=|.+|||+|+|||-||+.|+|..+.. |+++..+ +++..- .| .....+..+.++-+..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkY---VG------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKY---VG------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHH---hh------hHHHHHHHHHHHhhcC
Confidence 35668899999999999999999988643 4555543 332221 11 2334566777777777
Q ss_pred CeEEEEEeCCCCC-------c------ccccccCCCCC--CCCCcEEEEEecchhhh-hhcCC---CcceEecCCCCHHH
Q 042806 254 KTILVILDNIWGN-------L------DFQAVGIPHGD--DRKGCKVLLTARSLDVL-SRKMD---SQQNFSVGVLKEDE 314 (390)
Q Consensus 254 ~~~LlVlDdv~~~-------~------~~~~l~~~l~~--~~~~s~IivTtr~~~v~-~~~~~---~~~~~~l~~L~~~e 314 (390)
-+|+|.||.++.. . ....+.-.+.. ...|.-||-.|...++- ..... -...+.++.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 7899999999643 1 12222222222 23455566555543331 21222 23577788888888
Q ss_pred HHHHHHHhhC
Q 042806 315 AWSLFKKMAG 324 (390)
Q Consensus 315 a~~lf~~~~~ 324 (390)
-.+++.....
T Consensus 684 R~~ILK~~tk 693 (802)
T KOG0733|consen 684 RVAILKTITK 693 (802)
T ss_pred HHHHHHHHhc
Confidence 8899988875
No 195
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0029 Score=62.92 Aligned_cols=152 Identities=14% Similarity=0.118 Sum_probs=81.9
Q ss_pred cccccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 153 YEACESRMSTLNDILDALKN-------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
..++.|-++...+|-+.+.- ..++-|.++||+|+|||++|+.+.+..... | +.++.+
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp--- 502 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP--- 502 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH---
Confidence 44555665555555443321 356788999999999999999999987643 3 344332
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcc-------------cccccCCCCCC--CCCcE
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNLD-------------FQAVGIPHGDD--RKGCK 284 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~l~~~--~~~s~ 284 (390)
+++ +..-. .....+..+...-+.--++++.||.++.... +..+...+... ..+.-
T Consensus 503 -EL~----sk~vG-----eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 503 -ELF----SKYVG-----ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred -HHH----HHhcC-----chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEE
Confidence 111 11100 1122334444444444569999999864311 11111112111 12233
Q ss_pred EEEEecc-hhhhhhcCC---CcceEecCCCCHHHHHHHHHHhhC
Q 042806 285 VLLTARS-LDVLSRKMD---SQQNFSVGVLKEDEAWSLFKKMAG 324 (390)
Q Consensus 285 IivTtr~-~~v~~~~~~---~~~~~~l~~L~~~ea~~lf~~~~~ 324 (390)
||..|.. ..+-...+. ....+.+.+-+.+--.++|..++.
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence 3333332 333222333 335777777777778899998885
No 196
>PRK04296 thymidine kinase; Provisional
Probab=97.24 E-value=0.00049 Score=59.53 Aligned_cols=110 Identities=21% Similarity=0.149 Sum_probs=61.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCchHHHHHHHHHHhC
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHE---ESDSGRARSLRNRLKK 252 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 252 (390)
.++.|+|+.|.||||++..+....... -..++.+ .+.++.......+++.++..... .........+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~--k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVF--KPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEE--eccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 467899999999999999999887543 2223333 12222222234455666543322 112223333333 33
Q ss_pred CCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecchh
Q 042806 253 EKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARSLD 293 (390)
Q Consensus 253 ~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~~~ 293 (390)
++.-+||+|.++-. ++...+...+ ...|..||+|.+...
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 34348999999643 1122222221 345788999999743
No 197
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.22 E-value=0.0047 Score=57.96 Aligned_cols=86 Identities=9% Similarity=0.062 Sum_probs=47.4
Q ss_pred EEEEEeCCCCCc--ccccccCCCCCCCCCcEEEEEecch-hhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCch
Q 042806 256 ILVILDNIWGNL--DFQAVGIPHGDDRKGCKVLLTARSL-DVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEF 332 (390)
Q Consensus 256 ~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~IivTtr~~-~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~ 332 (390)
=++|+|++...+ .-+.+...+..-..++.+|++|.+. .+......-...+.+.+++.+++.+.+.... ....
T Consensus 115 kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~~- 189 (325)
T PRK08699 115 RVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----VAEP- 189 (325)
T ss_pred eEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----CCcH-
Confidence 355668876542 2222222221112346677777764 3433333445689999999999988886541 1111
Q ss_pred HHHHHHHHHHcCCChHHH
Q 042806 333 KWVAKDVARECAGLPVSI 350 (390)
Q Consensus 333 ~~~~~~i~~~~~GlPLai 350 (390)
. ..+..++|-|+..
T Consensus 190 ~----~~l~~~~g~p~~~ 203 (325)
T PRK08699 190 E----ERLAFHSGAPLFD 203 (325)
T ss_pred H----HHHHHhCCChhhh
Confidence 1 1235688888643
No 198
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.20 E-value=0.002 Score=57.31 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=35.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKI 222 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l 222 (390)
...++.|+|++|+|||+++.+++...... -..++|++.. .++.+.+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 45789999999999999999998876533 3568898887 4554443
No 199
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.20 E-value=0.0011 Score=57.66 Aligned_cols=65 Identities=20% Similarity=0.116 Sum_probs=50.1
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ 217 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 217 (390)
..++||-++.++.+.-...+++.+-+.|.||+|+||||-+..+++.+-....-+.+.-.++|...
T Consensus 26 l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR 90 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER 90 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc
Confidence 45789999999988888888899999999999999999999998887543222344445555443
No 200
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0014 Score=67.22 Aligned_cols=158 Identities=12% Similarity=0.134 Sum_probs=91.6
Q ss_pred CcccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC----eEEEEEeCCCCCHHHHHHHHH
Q 042806 152 DYEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFD----QVIFVEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~----~~~wv~v~~~~~~~~l~~~i~ 227 (390)
..++++||+.++.++++.|....-.--.++|++|||||+++--++...-..+-.. ..++ +. ++ .
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~-sL----D~-------g 235 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY-SL----DL-------G 235 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE-Ee----cH-------H
Confidence 3678999999999999999763222234679999999999999988865432111 1111 00 11 1
Q ss_pred HHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc--------cccc---ccCCCCCCCCCcEEEEEecchhhhh
Q 042806 228 DKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL--------DFQA---VGIPHGDDRKGCKVLLTARSLDVLS 296 (390)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--------~~~~---l~~~l~~~~~~s~IivTtr~~~v~~ 296 (390)
.-.........-...+..+.+.+....+.+|.+|.++..- ..+. +++.+ ..+.--.|-.||-++.- .
T Consensus 236 ~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-ARGeL~~IGATT~~EYR-k 313 (786)
T COG0542 236 SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-ARGELRCIGATTLDEYR-K 313 (786)
T ss_pred HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH-hcCCeEEEEeccHHHHH-H
Confidence 1111122222334455556666654446999999997541 1222 23333 11222235566654322 1
Q ss_pred h------cCCCcceEecCCCCHHHHHHHHHHhh
Q 042806 297 R------KMDSQQNFSVGVLKEDEAWSLFKKMA 323 (390)
Q Consensus 297 ~------~~~~~~~~~l~~L~~~ea~~lf~~~~ 323 (390)
+ ...-...+.+...+.+++..+++-..
T Consensus 314 ~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 314 YIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 1 11233688899999999999987654
No 201
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.19 E-value=0.003 Score=52.51 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ 217 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 217 (390)
++.|+|++|+||||++..+....... -..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcch
Confidence 36799999999999999998887542 3457777776543
No 202
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.18 E-value=0.0032 Score=56.47 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=35.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEI 226 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i 226 (390)
...++.|.|++|+|||+|+.++....-.+ =...+|++... ++.++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH
Confidence 46789999999999999999987664322 34577777654 566666654
No 203
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0023 Score=60.32 Aligned_cols=86 Identities=29% Similarity=0.353 Sum_probs=60.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CchHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE--SDSGRARSLRNRLK 251 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~ 251 (390)
.-.+|.|-|.+|+|||||..++..+...+. .+.|| +..-+..++ +--++.|+...+.. -....++.+...+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYV--sGEES~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYV--SGEESLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEE--eCCcCHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 357899999999999999999999987542 45555 444455443 33356676544332 22334567777777
Q ss_pred CCCeEEEEEeCCCC
Q 042806 252 KEKTILVILDNIWG 265 (390)
Q Consensus 252 ~~~~~LlVlDdv~~ 265 (390)
..++-++|+|-++.
T Consensus 166 ~~~p~lvVIDSIQT 179 (456)
T COG1066 166 QEKPDLVVIDSIQT 179 (456)
T ss_pred hcCCCEEEEeccce
Confidence 78889999999863
No 204
>PRK06696 uridine kinase; Validated
Probab=97.16 E-value=0.00072 Score=60.09 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=35.9
Q ss_pred chhHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 158 SRMSTLNDILDALK---NPDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 158 gR~~~~~~l~~~L~---~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.|...+.+|.+.+. .+++.+|+|.|.+|+||||||+.+......
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46666777777764 356789999999999999999999998754
No 205
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.16 E-value=0.002 Score=58.46 Aligned_cols=89 Identities=24% Similarity=0.317 Sum_probs=56.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC----------Cc-
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEK----LFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE----------SD- 239 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~----------~~- 239 (390)
..+.=|+|++|+|||.|+.+++-...... .=..++|++-...++.+.+. +|++..+...... +.
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 46788999999999999999876643221 12469999999988887764 5666654322100 11
Q ss_pred --hHHHHHHHHHHhCCCeEEEEEeCCC
Q 042806 240 --SGRARSLRNRLKKEKTILVILDNIW 264 (390)
Q Consensus 240 --~~~~~~l~~~l~~~~~~LlVlDdv~ 264 (390)
...+..+...+.+.+--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 1223344444545565699999984
No 206
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.13 E-value=0.0031 Score=59.04 Aligned_cols=91 Identities=16% Similarity=0.248 Sum_probs=57.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CC-
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEK----LFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHE----------ES- 238 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~----------~~- 238 (390)
...++-|+|++|+|||+|+.+++....... .-..++||+....++.+.+. +++..++..... .+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~~ 172 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYNS 172 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCCH
Confidence 467889999999999999999987753210 01268999998888877654 445555443210 01
Q ss_pred --chHHHHHHHHHHhCC--CeEEEEEeCCCC
Q 042806 239 --DSGRARSLRNRLKKE--KTILVILDNIWG 265 (390)
Q Consensus 239 --~~~~~~~l~~~l~~~--~~~LlVlDdv~~ 265 (390)
.......+.+.+... ..-+||+|.+..
T Consensus 173 ~~~~~lld~l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 173 NHQMLLVEKAEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 111233455555443 235899998853
No 207
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0029 Score=62.37 Aligned_cols=89 Identities=21% Similarity=0.265 Sum_probs=47.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI-QDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKK 252 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (390)
...+|+|+|++|+||||++..+......+.....+..++.... ....+-+......++...........+..+.+.+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 3578999999999999999998876543321233455544321 122233333344444433222222223333344433
Q ss_pred CCeEEEEEeCCC
Q 042806 253 EKTILVILDNIW 264 (390)
Q Consensus 253 ~~~~LlVlDdv~ 264 (390)
. =+|++|..-
T Consensus 429 ~--DLVLIDTaG 438 (559)
T PRK12727 429 Y--KLVLIDTAG 438 (559)
T ss_pred C--CEEEecCCC
Confidence 2 377888764
No 208
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.10 E-value=0.0012 Score=53.80 Aligned_cols=43 Identities=30% Similarity=0.286 Sum_probs=33.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 042806 178 LGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGE 225 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~ 225 (390)
|.|+|++|+|||+||+.++...... ...+.++...+..+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~-----~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRP-----VIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCE-----EEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcc-----eEEEEeccccccccceee
Confidence 5799999999999999999988332 455678888888877643
No 209
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.10 E-value=0.00065 Score=63.80 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=40.4
Q ss_pred cccchhHHHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 155 ACESRMSTLNDILDALKN------PDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.++|-++.++++++++.. .+.+++.|+|++|+||||||..+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 588898999999988853 24688999999999999999999998754
No 210
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.10 E-value=0.0036 Score=58.74 Aligned_cols=91 Identities=21% Similarity=0.298 Sum_probs=58.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC----------Cc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKL----FDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE----------SD 239 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~----------~~ 239 (390)
...++-|+|++|+|||+++.+++........ =..++||+....+++..+. +++..++...+.. +.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCCH
Confidence 4678899999999999999999876432211 1368999998888877654 4445555432110 11
Q ss_pred ---hHHHHHHHHHHhC-CCeEEEEEeCCCC
Q 042806 240 ---SGRARSLRNRLKK-EKTILVILDNIWG 265 (390)
Q Consensus 240 ---~~~~~~l~~~l~~-~~~~LlVlDdv~~ 265 (390)
......+...+.. .+.-|||+|.+..
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 1123344444544 4445999999853
No 211
>PHA02244 ATPase-like protein
Probab=97.10 E-value=0.0042 Score=58.52 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=25.5
Q ss_pred HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 165 DILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.+..++..+. -|.|+|++|+|||+||+.++....
T Consensus 111 ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 111 DIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhC
Confidence 4445554332 366899999999999999998854
No 212
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.10 E-value=0.0039 Score=55.64 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=36.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGL 232 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~ 232 (390)
...++.|.|++|+|||||+.+++.....+ . ...+|++ ...+..++++.+ ..++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g-~~~~yi~--~e~~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQN-G-YSVSYVS--TQLTTTEFIKQM-MSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhC-C-CcEEEEe--CCCCHHHHHHHH-HHhCC
Confidence 45689999999999999987777665322 2 2356665 333567777776 34443
No 213
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.014 Score=51.51 Aligned_cols=147 Identities=18% Similarity=0.252 Sum_probs=82.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKK 252 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (390)
.+++-+.++|++|.|||-||+.++++. ++-|+.+|.. ++.+..+. .-...+..+.-..+.
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs----elvqk~ig---------egsrmvrelfvmare 238 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS----ELVQKYIG---------EGSRMVRELFVMARE 238 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH----HHHHHHhh---------hhHHHHHHHHHHHHh
Confidence 467888999999999999999997754 4567777763 33322211 112244445544555
Q ss_pred CCeEEEEEeCCCCCcc------------cc----cccCCCC--CCCCCcEEEEEecchhhhhh-cCC---CcceEecCCC
Q 042806 253 EKTILVILDNIWGNLD------------FQ----AVGIPHG--DDRKGCKVLLTARSLDVLSR-KMD---SQQNFSVGVL 310 (390)
Q Consensus 253 ~~~~LlVlDdv~~~~~------------~~----~l~~~l~--~~~~~s~IivTtr~~~v~~~-~~~---~~~~~~l~~L 310 (390)
.-+-+|.+|.+++... .+ .+...+. ...++.+||..|...++... ... ..+.++..+-
T Consensus 239 hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p 318 (404)
T KOG0728|consen 239 HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPP 318 (404)
T ss_pred cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCC
Confidence 6678999998864310 00 1111111 12456678877776554321 111 2346777777
Q ss_pred CHHHHHHHHHHhhC--CCCCCCchHHHHHHH
Q 042806 311 KEDEAWSLFKKMAG--DYIEGSEFKWVAKDV 339 (390)
Q Consensus 311 ~~~ea~~lf~~~~~--~~~~~~~~~~~~~~i 339 (390)
+.+.-.+++.-+.. .-....++..++.++
T Consensus 319 ~e~ar~~ilkihsrkmnl~rgi~l~kiaekm 349 (404)
T KOG0728|consen 319 NEEARLDILKIHSRKMNLTRGINLRKIAEKM 349 (404)
T ss_pred CHHHHHHHHHHhhhhhchhcccCHHHHHHhC
Confidence 76666667665443 222334445444443
No 214
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.09 E-value=0.0031 Score=59.18 Aligned_cols=100 Identities=17% Similarity=0.154 Sum_probs=55.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKT 255 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 255 (390)
..+.++|++|+|||+|+..+++....++ + .++|+++ .+++..+...-. .. .... ....+.+.+-.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g-~-~V~y~t~------~~l~~~l~~~~~-~~----~~~~-~~~~~~l~~~D- 248 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG-K-SVIYRTA------DELIEILREIRF-NN----DKEL-EEVYDLLINCD- 248 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC-C-eEEEEEH------HHHHHHHHHHHh-cc----chhH-HHHHHHhccCC-
Confidence 6789999999999999999999886542 3 3555543 445554433211 10 0011 11134444433
Q ss_pred EEEEEeCCCCC--cccc--cccCCCCC-CCCCcEEEEEecc
Q 042806 256 ILVILDNIWGN--LDFQ--AVGIPHGD-DRKGCKVLLTARS 291 (390)
Q Consensus 256 ~LlVlDdv~~~--~~~~--~l~~~l~~-~~~~s~IivTtr~ 291 (390)
||||||+... ..|. .+...+.. ...+..+||||..
T Consensus 249 -LLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 249 -LLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred -EEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 8999999543 2232 22222211 1224457888874
No 215
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0046 Score=62.58 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=67.5
Q ss_pred cccCcccccchhHHHHHHHHHhcC---------C---CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 042806 149 SIKDYEACESRMSTLNDILDALKN---------P---DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI 216 (390)
Q Consensus 149 ~~~~~~~~~gR~~~~~~l~~~L~~---------~---~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 216 (390)
+....+++.|-++-..+|.+-+.- . +.+=|.+||++|.|||-||+.|+.+.. ..|++|.++
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP 739 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP 739 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH
Confidence 344466788888888888876642 1 234688999999999999999998875 345666553
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 042806 217 QDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN 266 (390)
Q Consensus 217 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 266 (390)
+++.- ..| ..+.-+..+.+.-+.-.||+|.||.+++.
T Consensus 740 ----ELLNM---YVG------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ----ELLNM---YVG------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred ----HHHHH---Hhc------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 22211 111 22335667777777778899999999754
No 216
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.04 E-value=0.0018 Score=55.22 Aligned_cols=36 Identities=28% Similarity=0.475 Sum_probs=29.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFV 211 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv 211 (390)
+..+|.+.|+.|+||||+++.++...... +...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 45689999999999999999999988643 5545554
No 217
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0015 Score=59.61 Aligned_cols=133 Identities=15% Similarity=0.232 Sum_probs=71.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhc--CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETE--KLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKK 252 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~--~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (390)
.++|.++||+|.|||+|++.++++...+ +.|....-+.++. ..++..=+++-| .....+.+.+.+.+..
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsESg-----KlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSESG-----KLVAKMFQKIQELVED 247 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhhhh-----hHHHHHHHHHHHHHhC
Confidence 5899999999999999999999998764 3344333343322 222222111111 0112233344444544
Q ss_pred CCe-EEEEEeCCCCCc------------------------ccccccCCCCCCCCCcEEEEEecch----hhhhhcCCCcc
Q 042806 253 EKT-ILVILDNIWGNL------------------------DFQAVGIPHGDDRKGCKVLLTARSL----DVLSRKMDSQQ 303 (390)
Q Consensus 253 ~~~-~LlVlDdv~~~~------------------------~~~~l~~~l~~~~~~s~IivTtr~~----~v~~~~~~~~~ 303 (390)
.+. +.+.+|.|.+.. +++.++ ..++ .+|+||.+- ++|. ...+.-
T Consensus 248 ~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-----~~~N-vliL~TSNl~~siD~Af-VDRADi 320 (423)
T KOG0744|consen 248 RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-----RYPN-VLILATSNLTDSIDVAF-VDRADI 320 (423)
T ss_pred CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCC-EEEEeccchHHHHHHHh-hhHhhh
Confidence 443 455578886331 112221 1223 355555542 2221 122334
Q ss_pred eEecCCCCHHHHHHHHHHhh
Q 042806 304 NFSVGVLKEDEAWSLFKKMA 323 (390)
Q Consensus 304 ~~~l~~L~~~ea~~lf~~~~ 323 (390)
...+++-+.+...+++..+.
T Consensus 321 ~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 321 VFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred eeecCCccHHHHHHHHHHHH
Confidence 67788888888888887665
No 218
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.01 E-value=0.0031 Score=59.46 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=57.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc---C-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC----------Cc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETE---K-LFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE----------SD 239 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~---~-~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~----------~~ 239 (390)
...++-|+|++|+|||+|+..++-..... + .-..++|++....++++.+ .++++.++...... +.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCH
Confidence 45788899999999999999887553211 1 1136899999998888775 45677766543211 11
Q ss_pred hHH---HHHHHHHHhCCCeEEEEEeCCCC
Q 042806 240 SGR---ARSLRNRLKKEKTILVILDNIWG 265 (390)
Q Consensus 240 ~~~---~~~l~~~l~~~~~~LlVlDdv~~ 265 (390)
... +..+...+...+.-|||+|.+..
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 111 22222334444556999999853
No 219
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.01 E-value=0.0038 Score=56.86 Aligned_cols=121 Identities=21% Similarity=0.168 Sum_probs=67.6
Q ss_pred HHHHHHhc-CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE---eCCCCCHHHHHHHHHHHhCC-CCC---
Q 042806 164 NDILDALK-NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVE---VSKIQDIRKIQGEIADKLGL-TLH--- 235 (390)
Q Consensus 164 ~~l~~~L~-~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~---v~~~~~~~~l~~~i~~~l~~-~~~--- 235 (390)
+.++..+. ..+..-++|.|+.|+|||||.+.+...... ..+.+++. +.......++ +..... ...
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~d~~~ei----~~~~~~~~q~~~~ 171 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVGIVDERSEI----AGCVNGVPQHDVG 171 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEeecchhHHHH----HHHhccccccccc
Confidence 33444443 334567899999999999999999887643 22333331 1111112233 222211 111
Q ss_pred ----CCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhh
Q 042806 236 ----EESDSGRARSLRNRLKKEKTILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDV 294 (390)
Q Consensus 236 ----~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v 294 (390)
..+.......+...+....+=++++|.+.....+..+...+ ..|..+|+||....+
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 11111223344555554456799999997666555554443 247789999997655
No 220
>PTZ00035 Rad51 protein; Provisional
Probab=97.00 E-value=0.0051 Score=58.04 Aligned_cols=91 Identities=14% Similarity=0.199 Sum_probs=56.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc---C-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CCc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETE---K-LFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHE----------ESD 239 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~---~-~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~----------~~~ 239 (390)
...++.|+|++|+|||+|+.+++-..... + .-..++|++....++.+. +.++++.++..... .+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHhhceEEEccCCH
Confidence 46789999999999999999987654310 1 123567998887777766 44556666543211 011
Q ss_pred hH---HHHHHHHHHhCCCeEEEEEeCCCC
Q 042806 240 SG---RARSLRNRLKKEKTILVILDNIWG 265 (390)
Q Consensus 240 ~~---~~~~l~~~l~~~~~~LlVlDdv~~ 265 (390)
.. .+..+...+...+.-|||+|.+..
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 12 222233344445556999999853
No 221
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.00 E-value=0.0052 Score=54.81 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=26.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
++..+++|.|+.|+|||||++.+.......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 457799999999999999999999887653
No 222
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.99 E-value=0.0036 Score=58.56 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=56.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh---cC-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CCc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET---EK-LFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHE----------ESD 239 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~---~~-~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~----------~~~ 239 (390)
...++.|+|++|+|||+|+..++..... .+ .-..++|++....++... +.++++.++..... .+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhhccEEEEecCCh
Confidence 4678999999999999999998764321 11 123578998888777765 44455665543221 011
Q ss_pred hH---HHHHHHHHHhCCCeEEEEEeCCC
Q 042806 240 SG---RARSLRNRLKKEKTILVILDNIW 264 (390)
Q Consensus 240 ~~---~~~~l~~~l~~~~~~LlVlDdv~ 264 (390)
.. .+..+...+...+.-|||+|.+.
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcH
Confidence 11 22333333444555699999985
No 223
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.99 E-value=0.0038 Score=56.65 Aligned_cols=91 Identities=18% Similarity=0.280 Sum_probs=56.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCch-----
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ-DIRKIQGEIADKLGLT-------LHEESDS----- 240 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~----- 240 (390)
+-.-++|.|.+|+|||||++.+++....+ +-+.++++.++... ...++...+...-... ..+.+..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34568899999999999999999987653 22456666776543 4556666654432111 1111111
Q ss_pred -HHHHHHHHHHh-C-CCeEEEEEeCCCC
Q 042806 241 -GRARSLRNRLK-K-EKTILVILDNIWG 265 (390)
Q Consensus 241 -~~~~~l~~~l~-~-~~~~LlVlDdv~~ 265 (390)
...-.+.+++. . ++.+|+++||+..
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 12234556664 2 5669999999853
No 224
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.99 E-value=0.0039 Score=55.06 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=32.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQD 218 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 218 (390)
...++.|+|++|+||||++.+++...... -..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 46789999999999999999998876432 23567877655443
No 225
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.99 E-value=0.0072 Score=58.89 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=37.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI-QDIRKIQGEIADKLGL 232 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~l~~~i~~~l~~ 232 (390)
.+.+|.++|++|+||||++..++...... .+ .+..+++... ....+-+..++..++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999887643 23 2333444322 1234445555666554
No 226
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.0011 Score=54.44 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeE
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETEKLFDQV 208 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~ 208 (390)
-|.|.|++|+||||+++.+.+.++.++ |...
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g-~kvg 37 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKG-YKVG 37 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcC-ceee
Confidence 488999999999999999999988753 6543
No 227
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.98 E-value=0.004 Score=59.51 Aligned_cols=87 Identities=25% Similarity=0.276 Sum_probs=55.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CchHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE--SDSGRARSLRNRLK 251 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~ 251 (390)
...++.|.|++|+|||||+.+++...... -..++|++... +..++.. -+..++...+.. ........+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EE--s~~qi~~-Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEE--SPEQIKL-RADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCc--CHHHHHH-HHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 35689999999999999999998876543 23567776543 3444332 245565433221 11122445566665
Q ss_pred CCCeEEEEEeCCCC
Q 042806 252 KEKTILVILDNIWG 265 (390)
Q Consensus 252 ~~~~~LlVlDdv~~ 265 (390)
..++-++|+|.+..
T Consensus 156 ~~~~~lVVIDSIq~ 169 (372)
T cd01121 156 ELKPDLVIIDSIQT 169 (372)
T ss_pred hcCCcEEEEcchHH
Confidence 55667999999853
No 228
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.98 E-value=0.006 Score=55.52 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=40.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~ 227 (390)
+..+++.|+|.+|+|||+++.++....... ...++||+... +..++...+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e--~~~~l~~~~~ 71 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEE--SPEELLENAR 71 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecC--CHHHHHHHHH
Confidence 467899999999999999999999987654 67789998876 4555555543
No 229
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.98 E-value=0.0021 Score=55.05 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+|.|+|++|+||||+++.+.....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999988653
No 230
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0098 Score=59.51 Aligned_cols=131 Identities=20% Similarity=0.202 Sum_probs=74.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKE 253 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (390)
..+.+.++|++|.|||.||+.+++..+.. | +.+... +++.. .+| .....+..+...-...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--f-----i~v~~~----~l~sk---~vG------esek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--F-----ISVKGS----ELLSK---WVG------ESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--E-----EEeeCH----HHhcc---ccc------hHHHHHHHHHHHHHcC
Confidence 45689999999999999999999966532 3 222221 11100 000 1222344444444445
Q ss_pred CeEEEEEeCCCCCccc-------------ccccCCCC--CCCCCcEEEEEecchhhhh-hc-C--CCcceEecCCCCHHH
Q 042806 254 KTILVILDNIWGNLDF-------------QAVGIPHG--DDRKGCKVLLTARSLDVLS-RK-M--DSQQNFSVGVLKEDE 314 (390)
Q Consensus 254 ~~~LlVlDdv~~~~~~-------------~~l~~~l~--~~~~~s~IivTtr~~~v~~-~~-~--~~~~~~~l~~L~~~e 314 (390)
.+++|.+|+++....+ ..+...+. ....+..||-||....... .. . .-...+.+.+-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 6699999999643211 11222221 1223344555555433221 11 1 234588899999999
Q ss_pred HHHHHHHhhC
Q 042806 315 AWSLFKKMAG 324 (390)
Q Consensus 315 a~~lf~~~~~ 324 (390)
..++|..+..
T Consensus 415 r~~i~~~~~~ 424 (494)
T COG0464 415 RLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHhc
Confidence 9999999986
No 231
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.94 E-value=0.0044 Score=60.39 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=46.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh-hcCCCCeEEEEEeCCCCC-HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE-TEKLFDQVIFVEVSKIQD-IRKIQGEIADKLGLTLHEESDSGRARSLRNRLKK 252 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~-~~~~f~~~~wv~v~~~~~-~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (390)
.++++++|++|+||||++..++.... ... -..+..++...... ..+-+....+.++..................+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~ 299 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRD 299 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCC
Confidence 46899999999999999999887764 222 23455666543211 1222333344455443222222222222223332
Q ss_pred CCeEEEEEeCC
Q 042806 253 EKTILVILDNI 263 (390)
Q Consensus 253 ~~~~LlVlDdv 263 (390)
. =+|++|..
T Consensus 300 ~--DlVlIDt~ 308 (424)
T PRK05703 300 C--DVILIDTA 308 (424)
T ss_pred C--CEEEEeCC
Confidence 2 48888865
No 232
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.93 E-value=0.016 Score=60.39 Aligned_cols=59 Identities=12% Similarity=0.172 Sum_probs=40.0
Q ss_pred cccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 042806 155 ACESRMSTLNDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK 215 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 215 (390)
.++|+...+..+.+.+.. ....-|.|+|+.|+|||++|+.+.+..... -...+.+++..
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~ 437 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAA 437 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEeccc
Confidence 578888777777655542 233467799999999999999998865322 12344555544
No 233
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.93 E-value=0.0071 Score=58.78 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.+.++.++|++|+||||.+..++....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467899999999999999998887754
No 234
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.92 E-value=0.0038 Score=53.54 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGE 225 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~ 225 (390)
++.|.|++|+|||+|+.++....-.. =..++|++... +..++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 36799999999999999987775432 13466776543 45555554
No 235
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.92 E-value=0.0051 Score=57.19 Aligned_cols=85 Identities=21% Similarity=0.277 Sum_probs=53.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHE------ESDSGRARSLR 247 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~ 247 (390)
..+++-|+|+.|+|||||+..+....... -..++|+...+.+++.- +..+|.+.+. ....+....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 46799999999999999999999876543 34689999988776533 4455554321 12233444455
Q ss_pred HHHhCCCeEEEEEeCCCC
Q 042806 248 NRLKKEKTILVILDNIWG 265 (390)
Q Consensus 248 ~~l~~~~~~LlVlDdv~~ 265 (390)
..++.+.--++|+|-|-.
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 556666645899999853
No 236
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.92 E-value=0.0076 Score=53.92 Aligned_cols=86 Identities=12% Similarity=0.171 Sum_probs=55.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----------------
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHE----------------- 236 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~----------------- 236 (390)
...++.|+|++|+|||+|+.++....-.. =..++|++... +..++.+.+ ..++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~--~~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTEN--TSKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCC--CHHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 46789999999999999999997654222 23578888765 455666654 334322110
Q ss_pred ----CCchHHHHHHHHHHhCCCeEEEEEeCCC
Q 042806 237 ----ESDSGRARSLRNRLKKEKTILVILDNIW 264 (390)
Q Consensus 237 ----~~~~~~~~~l~~~l~~~~~~LlVlDdv~ 264 (390)
.........+.+.+...++-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 1113445566666655454689999985
No 237
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.92 E-value=0.063 Score=50.14 Aligned_cols=47 Identities=21% Similarity=0.177 Sum_probs=34.1
Q ss_pred eEecCCCCHHHHHHHHHHhhCCCCCC--CchHHHHHHHHHHcCCChHHH
Q 042806 304 NFSVGVLKEDEAWSLFKKMAGDYIEG--SEFKWVAKDVARECAGLPVSI 350 (390)
Q Consensus 304 ~~~l~~L~~~ea~~lf~~~~~~~~~~--~~~~~~~~~i~~~~~GlPLai 350 (390)
++++.+++.+|+..++.......... ...+...+++.--.+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999998877522211 333445667777789999754
No 238
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.90 E-value=0.002 Score=56.14 Aligned_cols=110 Identities=9% Similarity=0.059 Sum_probs=57.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK-IQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEK 254 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 254 (390)
.+|.|.|+.|+||||++..+....... ....++..-.+ .+.... ...+..+-.. ..........+...+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~e~~~E~~~~~-~~~~i~q~~v---g~~~~~~~~~i~~aLr~~- 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTIEDPIEFVHES-KRSLINQREV---GLDTLSFENALKAALRQD- 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEEcCCccccccC-ccceeeeccc---CCCccCHHHHHHHHhcCC-
Confidence 468899999999999999888776432 23333322211 110000 0001100000 001122344555666543
Q ss_pred eEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhhh
Q 042806 255 TILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDVL 295 (390)
Q Consensus 255 ~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v~ 295 (390)
+=++++|++.+.+....+... ...|..++.|+...+..
T Consensus 75 pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 75 PDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 469999999766554443222 23455688888866543
No 239
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0063 Score=54.04 Aligned_cols=92 Identities=18% Similarity=0.293 Sum_probs=61.4
Q ss_pred cccccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 153 YEACESRMSTLNDILDALKN-------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
+.++.|-.+.+++|-+...- +.++-|.++|++|.|||-+|+.|+|.... +|+.|-.
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda-------cfirvig---- 244 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA-------CFIRVIG---- 244 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc-------eEEeehh----
Confidence 44566777777777664432 34677889999999999999999987642 3333322
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCC
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIW 264 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~ 264 (390)
.++.+.-. | .-...+..|.+..+.++-|+|.||.+.
T Consensus 245 selvqkyv---g------egarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 245 SELVQKYV---G------EGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HHHHHHHh---h------hhHHHHHHHHHHhcccceEEEEeeccc
Confidence 12222211 1 223466777787888888999999985
No 240
>PRK04328 hypothetical protein; Provisional
Probab=96.90 E-value=0.0056 Score=55.33 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=36.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLG 231 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~ 231 (390)
...++.|.|++|+|||+|+.++....-.+ -...+|++... ++.++.+. ++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee--~~~~i~~~-~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEE--HPVQVRRN-MRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeC--CHHHHHHH-HHHcC
Confidence 56789999999999999999987764322 24467777755 44454433 34443
No 241
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.88 E-value=0.0081 Score=51.85 Aligned_cols=88 Identities=23% Similarity=0.188 Sum_probs=48.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCC--------CeEEEEEeCCCCCHHHHHHHHHHHhCCCC------------
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLF--------DQVIFVEVSKIQDIRKIQGEIADKLGLTL------------ 234 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f--------~~~~wv~v~~~~~~~~l~~~i~~~l~~~~------------ 234 (390)
..+..|.|++|+||||++.++.........| ..++|++.... ..++.+.+........
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~ 109 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSN 109 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeeccc
Confidence 3578899999999999999999887643223 24667766554 4444444433332110
Q ss_pred -----------CCCCchHHHHHHHHHHhC-CCeEEEEEeCCC
Q 042806 235 -----------HEESDSGRARSLRNRLKK-EKTILVILDNIW 264 (390)
Q Consensus 235 -----------~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~ 264 (390)
...........+.+.+.. .+.-++|+|.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~ 151 (193)
T PF13481_consen 110 WGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQ 151 (193)
T ss_dssp E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GG
T ss_pred cccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHH
Confidence 000112334566666665 455688888774
No 242
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.87 E-value=0.0077 Score=59.94 Aligned_cols=86 Identities=13% Similarity=0.181 Sum_probs=59.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------------C
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHE----------------E 237 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~----------------~ 237 (390)
...++.|.|++|+|||||+.++......+ =..++|++.. -+..++...+ +.++.+... .
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~e--Es~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYE--ESRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEee--CCHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 56789999999999999999999886433 2345665544 3666777664 555543211 1
Q ss_pred CchHHHHHHHHHHhCCCeEEEEEeCCC
Q 042806 238 SDSGRARSLRNRLKKEKTILVILDNIW 264 (390)
Q Consensus 238 ~~~~~~~~l~~~l~~~~~~LlVlDdv~ 264 (390)
.....+..+.+.+...++-++|+|.+.
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 224566777777776565789999986
No 243
>PRK10867 signal recognition particle protein; Provisional
Probab=96.86 E-value=0.0069 Score=58.89 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.+.+|.++|++|+||||++..++.....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4679999999999999988888876654
No 244
>PTZ00494 tuzin-like protein; Provisional
Probab=96.86 E-value=0.11 Score=50.01 Aligned_cols=161 Identities=10% Similarity=0.128 Sum_probs=97.5
Q ss_pred cccccchhHHHHHHHHHh---cCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042806 153 YEACESRMSTLNDILDAL---KNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADK 229 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L---~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~ 229 (390)
...++.|+.+-.-+-+.| ....++++++.|..|.||++|++......... .++|.+... ++-++.+.+.
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~p-----aV~VDVRg~---EDtLrsVVKA 441 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVA-----LVHVDVGGT---EDTLRSVVRA 441 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCC-----eEEEEecCC---cchHHHHHHH
Confidence 446788877755444444 44578999999999999999999988776543 678888765 4557888888
Q ss_pred hCCCCCCCCchHHHHHHHHHH------hCCCeEEEEEeCCCCCccccccc---CCCCCCCCCcEEEEEecchhhhh--hc
Q 042806 230 LGLTLHEESDSGRARSLRNRL------KKEKTILVILDNIWGNLDFQAVG---IPHGDDRKGCKVLLTARSLDVLS--RK 298 (390)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~l------~~~~~~LlVlDdv~~~~~~~~l~---~~l~~~~~~s~IivTtr~~~v~~--~~ 298 (390)
++.+.-+. ..+++.-+.+.. .+++.-+||+- +.+-..+..+. ..+.....-|.|++----+.+-. ..
T Consensus 442 LgV~nve~-CGDlLdFI~ea~~~A~~~~~g~~P~lVlk-LREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~ 519 (664)
T PTZ00494 442 LGVSNVEV-CGDLLGFVEEAMRGATVKASDGVPFLVMR-LREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVS 519 (664)
T ss_pred hCCCChhh-hccHHHHHHHHHHHHHHhcCCCCCEEEEE-eccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhcc
Confidence 98765442 122222222221 12333455542 21222222111 12223445577776655444321 12
Q ss_pred CCCcceEecCCCCHHHHHHHHHHhh
Q 042806 299 MDSQQNFSVGVLKEDEAWSLFKKMA 323 (390)
Q Consensus 299 ~~~~~~~~l~~L~~~ea~~lf~~~~ 323 (390)
.+-...|-+.+|+.++|.++-++..
T Consensus 520 LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 520 SRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred CccceeEecCCcCHHHHHHHHhccc
Confidence 3344688999999999999888765
No 245
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.85 E-value=0.0061 Score=58.44 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=50.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcC--CCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEK--LFDQVIFVEVSKIQ-DIRKIQGEIADKLGLTLHEESDSGRARSLRNRL 250 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~--~f~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l 250 (390)
.++++.++|+.|+||||.+..++....... .-..+..+++.... ...+-++..++.++.+................+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 457899999999999999999987765321 12245555555321 222235566666666433322222222222233
Q ss_pred hCCCeEEEEEeCCC
Q 042806 251 KKEKTILVILDNIW 264 (390)
Q Consensus 251 ~~~~~~LlVlDdv~ 264 (390)
.+ . -++++|..-
T Consensus 253 ~~-~-DlVLIDTaG 264 (388)
T PRK12723 253 KD-F-DLVLVDTIG 264 (388)
T ss_pred CC-C-CEEEEcCCC
Confidence 22 2 478888774
No 246
>PRK06547 hypothetical protein; Provisional
Probab=96.84 E-value=0.0018 Score=54.96 Aligned_cols=35 Identities=31% Similarity=0.242 Sum_probs=28.7
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 166 ILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 166 l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+...+......+|.|.|++|+||||+++.+.....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44445566788999999999999999999988754
No 247
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.83 E-value=0.0088 Score=60.44 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=37.2
Q ss_pred cccccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 153 YEACESRMSTLNDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...++|....+.++.+.+.. .....|.|+|+.|+|||++|+.+.+...
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 45788988888887776643 2334567999999999999999988753
No 248
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.018 Score=52.14 Aligned_cols=71 Identities=25% Similarity=0.342 Sum_probs=50.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEK 254 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 254 (390)
-+-|.++||+|.||+.||+.|+..... -|+++|.. ++.. +-+| ....++..|.+..+..+
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAnS-------TFFSvSSS----DLvS---KWmG------ESEkLVknLFemARe~k 225 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEANS-------TFFSVSSS----DLVS---KWMG------ESEKLVKNLFEMARENK 225 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcCC-------ceEEeehH----HHHH---HHhc------cHHHHHHHHHHHHHhcC
Confidence 467999999999999999999887642 23445442 2211 1222 23457778888888888
Q ss_pred eEEEEEeCCCC
Q 042806 255 TILVILDNIWG 265 (390)
Q Consensus 255 ~~LlVlDdv~~ 265 (390)
+-+|.+|.|+.
T Consensus 226 PSIIFiDEiDs 236 (439)
T KOG0739|consen 226 PSIIFIDEIDS 236 (439)
T ss_pred CcEEEeehhhh
Confidence 89999999964
No 249
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.82 E-value=0.0085 Score=55.11 Aligned_cols=28 Identities=18% Similarity=0.101 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..+.+|+|.|+.|+||||+++.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999988765553
No 250
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.0049 Score=59.17 Aligned_cols=84 Identities=17% Similarity=0.155 Sum_probs=44.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK-IQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKE 253 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (390)
..+++++|++|+||||++..++........+. +..++... .....+.+...+..++.+.... .....+.+.+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~-V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~---~~~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKS-VSLYTTDNYRIAAIEQLKRYADTMGMPFYPV---KDIKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCe-EEEecccchhhhHHHHHHHHHHhcCCCeeeh---HHHHHHHHHHHhC
Confidence 46899999999999999999987653222232 33333322 1122333444445555432211 1123344444322
Q ss_pred CeEEEEEeC
Q 042806 254 KTILVILDN 262 (390)
Q Consensus 254 ~~~LlVlDd 262 (390)
..=++++|-
T Consensus 299 ~~D~VLIDT 307 (432)
T PRK12724 299 GSELILIDT 307 (432)
T ss_pred CCCEEEEeC
Confidence 213688883
No 251
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.80 E-value=0.0061 Score=55.22 Aligned_cols=92 Identities=22% Similarity=0.261 Sum_probs=59.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh--hcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCCchH--
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE--TEKLFDQVIFVEVSKIQ-DIRKIQGEIADKLGLTL-------HEESDSG-- 241 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~--~~~~f~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~-------~~~~~~~-- 241 (390)
+-.-++|.|.+|+|||+|+..+.+... .+++-+.++++.++... ...+++..+...-.... .+.+...
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 345688999999999999999887754 12235678899887654 56667766655422211 1111111
Q ss_pred ----HHHHHHHHHhC--CCeEEEEEeCCCC
Q 042806 242 ----RARSLRNRLKK--EKTILVILDNIWG 265 (390)
Q Consensus 242 ----~~~~l~~~l~~--~~~~LlVlDdv~~ 265 (390)
..-.+.+++.+ ++++|+++||+..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 23356667654 4779999999953
No 252
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.081 Score=49.00 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=81.4
Q ss_pred HHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHh--------hhcCCCCeEEEEEe-CCCCCHHHHHHHHHHHhCCC
Q 042806 164 NDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKA--------ETEKLFDQVIFVEV-SKIQDIRKIQGEIADKLGLT 233 (390)
Q Consensus 164 ~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~--------~~~~~f~~~~wv~v-~~~~~~~~l~~~i~~~l~~~ 233 (390)
..+.+.+..++ .++..++|+.|.||++++..+.+.. ....|-+...++.. +.....+++. ++...+...
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~ 84 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFS 84 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccC
Confidence 34445555544 5677899999999999999998886 22222222333322 1223333322 333333222
Q ss_pred CCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc--ccccccCCCCCCCCCcEEEEEecc-hhhhhhcCCCcceEecCCC
Q 042806 234 LHEESDSGRARSLRNRLKKEKTILVILDNIWGNL--DFQAVGIPHGDDRKGCKVLLTARS-LDVLSRKMDSQQNFSVGVL 310 (390)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~IivTtr~-~~v~~~~~~~~~~~~l~~L 310 (390)
.- ..+.+=++|+|++.... ..+.+...+-.-.+++.+|++|.+ ..+......-...+++.++
T Consensus 85 ~~---------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l 149 (299)
T PRK07132 85 SF---------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEP 149 (299)
T ss_pred Cc---------------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCC
Confidence 10 11233688899986542 344444444444456666665544 4443333445679999999
Q ss_pred CHHHHHHHHHHh
Q 042806 311 KEDEAWSLFKKM 322 (390)
Q Consensus 311 ~~~ea~~lf~~~ 322 (390)
+.++..+.+...
T Consensus 150 ~~~~l~~~l~~~ 161 (299)
T PRK07132 150 DQQKILAKLLSK 161 (299)
T ss_pred CHHHHHHHHHHc
Confidence 999988777654
No 253
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.79 E-value=0.00049 Score=56.20 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=28.8
Q ss_pred chhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 158 SRMSTLNDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 158 gR~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
|+...+.++.+.+.. .....|.|+|+.|+||+++|+.++.....
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~ 47 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR 47 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence 444444445444432 23445779999999999999999887543
No 254
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.78 E-value=0.013 Score=55.24 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=29.4
Q ss_pred cchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 157 ESRMSTLNDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 157 ~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+|+...+.++.+.+.. ....-|.|+|+.|+||+++|+.+.+...
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence 3444445555444432 2234477999999999999999987653
No 255
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.78 E-value=0.0088 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+|+|.|++|+||||||+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999998875
No 256
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.75 E-value=0.0068 Score=59.55 Aligned_cols=87 Identities=25% Similarity=0.299 Sum_probs=54.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CchHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE--SDSGRARSLRNRLK 251 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~ 251 (390)
...++.|.|++|+|||||+.+++...... -..++|++... +..++... ++.++...+.. ........+.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 35689999999999999999998876532 23467776543 44454333 45565432211 01112345555665
Q ss_pred CCCeEEEEEeCCCC
Q 042806 252 KEKTILVILDNIWG 265 (390)
Q Consensus 252 ~~~~~LlVlDdv~~ 265 (390)
..++-++|+|.+..
T Consensus 154 ~~~~~lVVIDSIq~ 167 (446)
T PRK11823 154 EEKPDLVVIDSIQT 167 (446)
T ss_pred hhCCCEEEEechhh
Confidence 55556999999863
No 257
>PRK14527 adenylate kinase; Provisional
Probab=96.74 E-value=0.0078 Score=52.02 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...+|.|+|++|+||||+++.+.+...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999987764
No 258
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0023 Score=54.54 Aligned_cols=24 Identities=42% Similarity=0.444 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.|.|.|++|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 377999999999999999999854
No 259
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.73 E-value=0.0081 Score=50.75 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=48.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC-CeE
Q 042806 178 LGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKE-KTI 256 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~~ 256 (390)
+.|.|.+|+|||++|.++.... ....+|+.-...++. ++...|.+.-...+......+....+.+.+... +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 6799999999999999997652 234666666655544 455555443333333333333344555555321 224
Q ss_pred EEEEeCCC
Q 042806 257 LVILDNIW 264 (390)
Q Consensus 257 LlVlDdv~ 264 (390)
.+++|.+.
T Consensus 76 ~VLIDclt 83 (169)
T cd00544 76 VVLIDCLT 83 (169)
T ss_pred EEEEEcHh
Confidence 79999973
No 260
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.011 Score=56.40 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=28.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVS 214 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~ 214 (390)
++++|+|+|++|+||||++..++.....+ .+. +..+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~-Gkk-VglI~aD 278 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-KKT-VGFITTD 278 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc-CCc-EEEEecC
Confidence 45799999999999999999998876532 232 3445543
No 261
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.72 E-value=0.0023 Score=52.56 Aligned_cols=45 Identities=33% Similarity=0.469 Sum_probs=35.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTL 234 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~ 234 (390)
+|.|.|++|+||||+++.+.+...-. | + +...+++++++..|...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~--v---------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L--V---------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e--e---------eccHHHHHHHHHcCCCH
Confidence 68899999999999999999987643 1 1 34568888888887653
No 262
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.013 Score=53.44 Aligned_cols=88 Identities=19% Similarity=0.244 Sum_probs=55.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH-hC---CCCCCC--CchHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADK-LG---LTLHEE--SDSGRARSLR 247 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~-l~---~~~~~~--~~~~~~~~l~ 247 (390)
..+++=|+|+.|+||||+|.+++-..... -..++|++..+.++++.+. +++.. +. ...+.. .....+..+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 45788899999999999999988876543 3378999999999886643 34443 21 111111 1122233333
Q ss_pred HHHhCCCeEEEEEeCCCC
Q 042806 248 NRLKKEKTILVILDNIWG 265 (390)
Q Consensus 248 ~~l~~~~~~LlVlDdv~~ 265 (390)
..... +--|+|+|.+-.
T Consensus 136 ~~~~~-~i~LvVVDSvaa 152 (279)
T COG0468 136 RSGAE-KIDLLVVDSVAA 152 (279)
T ss_pred HhccC-CCCEEEEecCcc
Confidence 33333 336999999853
No 263
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.71 E-value=0.0047 Score=54.94 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=53.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------------------
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLH------------------ 235 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~------------------ 235 (390)
...++.|.|++|+|||+|+.++....-.+. =..++|++... +..++...+. .++.+..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee--~~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFEE--PPEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEecC--CHHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 567999999999999999999876543220 12367777654 4455555543 3432110
Q ss_pred ---CCCchHHHHHHHHHHhCCCeEEEEEeCCC
Q 042806 236 ---EESDSGRARSLRNRLKKEKTILVILDNIW 264 (390)
Q Consensus 236 ---~~~~~~~~~~l~~~l~~~~~~LlVlDdv~ 264 (390)
..+.......+.+.+...+...+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 12334455666666665444799999874
No 264
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.71 E-value=0.0016 Score=53.32 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987654
No 265
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.71 E-value=0.0015 Score=52.24 Aligned_cols=22 Identities=50% Similarity=0.709 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 042806 178 LGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (390)
|.|.|.+|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998885
No 266
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.68 E-value=0.12 Score=50.26 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.+.+|.++|+.|+||||++..++.....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999877654
No 267
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.67 E-value=0.0024 Score=56.27 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
.+++.|+|+.|.|||||.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999999743
No 268
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.66 E-value=0.0077 Score=62.36 Aligned_cols=84 Identities=19% Similarity=0.253 Sum_probs=56.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHE------ESDSGRARSLR 247 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~ 247 (390)
..+++-|+|++|+|||||+.+++...... =..++|+.....++. ..+..++.+.+. .+.......+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 46788999999999999998877654332 245788887776663 356667664331 12233444455
Q ss_pred HHHhCCCeEEEEEeCCC
Q 042806 248 NRLKKEKTILVILDNIW 264 (390)
Q Consensus 248 ~~l~~~~~~LlVlDdv~ 264 (390)
..+..+..-|||+|.+.
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 55566666799999985
No 269
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.65 E-value=0.0091 Score=54.29 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=30.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK 215 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 215 (390)
..+++.|.|++|+|||+++.+++...... =..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 46789999999999999999987764322 23567777764
No 270
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.022 Score=58.92 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=27.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEV 213 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v 213 (390)
..++.++|+.|+||||++..+............+..+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~ 223 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT 223 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC
Confidence 469999999999999999999877643221223444444
No 271
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.64 E-value=0.016 Score=50.93 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=35.9
Q ss_pred cccccchhHHHHHHHHH----hcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 153 YEACESRMSTLNDILDA----LKNPDVNMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~----L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
...++|-+...+.|++. +.+-.-.-+.+||..|.||++|++.+.+....+
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE 112 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence 34567766666666543 333333457799999999999999999998754
No 272
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.64 E-value=0.009 Score=50.65 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
++.+.|++|+||||++..+.......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999887543
No 273
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.64 E-value=0.0027 Score=62.95 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=40.7
Q ss_pred cccchhHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 155 ACESRMSTLNDILDALK------NPDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
+++|-++.++++++.|. +...+++.++||+|+||||||+.+.+....
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 57899999999999883 356689999999999999999999998754
No 274
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.016 Score=54.90 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=52.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC-HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQD-IRKIQGEIADKLGLTLHEESDSGRARSLRNRLKK 252 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (390)
+.++++++|+.|+||||++..+......++ ..+.+++...... ..+-++..++.++.+.........+....+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 467999999999999999999987764432 3466666654322 3344555566666543322222223333344431
Q ss_pred -CCeEEEEEeCCC
Q 042806 253 -EKTILVILDNIW 264 (390)
Q Consensus 253 -~~~~LlVlDdv~ 264 (390)
+..=+|++|-.-
T Consensus 283 ~~~~D~VLIDTAG 295 (407)
T PRK12726 283 VNCVDHILIDTVG 295 (407)
T ss_pred cCCCCEEEEECCC
Confidence 121478888774
No 275
>PRK05439 pantothenate kinase; Provisional
Probab=96.63 E-value=0.018 Score=53.49 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=24.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..+-+|+|.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999988664
No 276
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.02 Score=55.33 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=34.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI-QDIRKIQGEIADKLGLT 233 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~l~~~i~~~l~~~ 233 (390)
+..+++++|+.|+||||++..+............+..+..... ....+-+...++.++..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp 250 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVS 250 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCc
Confidence 3578999999999999999988775422212233444443321 12223344445555543
No 277
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.63 E-value=0.0019 Score=56.06 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
+|+|.|++|+||||+|+.+.......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999998753
No 278
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.62 E-value=0.015 Score=48.03 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
++.|+|.+|+|||||++.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998875
No 279
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.61 E-value=0.014 Score=54.25 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=34.9
Q ss_pred ccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 156 CESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 156 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
+-+|..+..--++.|.++....+.+.|.+|.|||-||....-.
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgle 268 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLE 268 (436)
T ss_pred cCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHH
Confidence 4456677777788899999999999999999999887765433
No 280
>PRK14974 cell division protein FtsY; Provisional
Probab=96.61 E-value=0.023 Score=53.46 Aligned_cols=89 Identities=18% Similarity=0.186 Sum_probs=49.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCC----CchHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI-QDIRKIQGEIADKLGLTLHEE----SDSGRARSLRN 248 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~~~----~~~~~~~~l~~ 248 (390)
++.+|.++|++|+||||++..++...... .+. ++.+..... ....+-+...+..++...... +....+....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~~-V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GFS-VVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCe-EEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 46899999999999999999988876543 343 333433211 122334555666776543211 11122222222
Q ss_pred HHh-CCCeEEEEEeCCCC
Q 042806 249 RLK-KEKTILVILDNIWG 265 (390)
Q Consensus 249 ~l~-~~~~~LlVlDdv~~ 265 (390)
... .+. =++++|-.-.
T Consensus 217 ~~~~~~~-DvVLIDTaGr 233 (336)
T PRK14974 217 HAKARGI-DVVLIDTAGR 233 (336)
T ss_pred HHHhCCC-CEEEEECCCc
Confidence 222 223 3888998743
No 281
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.60 E-value=0.0072 Score=53.10 Aligned_cols=86 Identities=22% Similarity=0.434 Sum_probs=53.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCC-------CCCCCCchH-----
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI-QDIRKIQGEIADKLGL-------TLHEESDSG----- 241 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~l~~~i~~~l~~-------~~~~~~~~~----- 241 (390)
-.-+.|.|.+|+|||+|+..+.+... -+..+++.++.. ....++..++...-.. ...+.+...
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 45688999999999999999999874 345588888754 4556666665333111 111111111
Q ss_pred -HHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 242 -RARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 242 -~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
..-.+.+++. .++.+|+++||+.
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred ccchhhhHHHhhcCCceeehhhhhH
Confidence 1123444443 3667999999984
No 282
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.58 E-value=0.0048 Score=50.44 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=29.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK 215 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 215 (390)
++|.|+|+.|+|||||++.+.+....+ .+...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 579999999999999999999998753 477666776665
No 283
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.067 Score=54.04 Aligned_cols=150 Identities=16% Similarity=0.188 Sum_probs=86.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKT 255 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 255 (390)
.-|.++|++|.|||.||..+...... -||++.++ +++.. .+| ...+.+..+.++.+.-+|
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~-------~fisvKGP----ElL~K---yIG------aSEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNL-------RFISVKGP----ELLSK---YIG------ASEQNVRDLFERAQSAKP 761 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCe-------eEEEecCH----HHHHH---Hhc------ccHHHHHHHHHHhhccCC
Confidence 45889999999999999999887653 45667654 33322 122 223456677777777788
Q ss_pred EEEEEeCCCCCc-------------ccccccCCCCC--CCCCcEEE-EEecchhhhhhcCCCc---ceEecCCCCHHHHH
Q 042806 256 ILVILDNIWGNL-------------DFQAVGIPHGD--DRKGCKVL-LTARSLDVLSRKMDSQ---QNFSVGVLKEDEAW 316 (390)
Q Consensus 256 ~LlVlDdv~~~~-------------~~~~l~~~l~~--~~~~s~Ii-vTtr~~~v~~~~~~~~---~~~~l~~L~~~ea~ 316 (390)
|++.||.+++.. ..+.+.-.+.. +-.|.-|+ .|||..-+-+.....+ +.+.-..-+..+-.
T Consensus 762 CiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl 841 (952)
T KOG0735|consen 762 CILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERL 841 (952)
T ss_pred eEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHH
Confidence 999999987431 12222222211 22344444 4566543322222222 23333444566677
Q ss_pred HHHHHhhCC--CCCCCchHHHHHHHHHHcCCChHH
Q 042806 317 SLFKKMAGD--YIEGSEFKWVAKDVARECAGLPVS 349 (390)
Q Consensus 317 ~lf~~~~~~--~~~~~~~~~~~~~i~~~~~GlPLa 349 (390)
++|...... .....+ .+.++.+++|..-|
T Consensus 842 ~il~~ls~s~~~~~~vd----l~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 842 EILQVLSNSLLKDTDVD----LECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHhhccCCccccc----hHHHhhhcCCCchh
Confidence 888776642 222233 34677888877644
No 284
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.012 Score=49.78 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..++.|.||+|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999876
No 285
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.55 E-value=0.0016 Score=55.56 Aligned_cols=27 Identities=37% Similarity=0.466 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
+.|.+.|.+|+||||+|+++...++.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 568899999999999999999998765
No 286
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.55 E-value=0.019 Score=56.56 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=36.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK-IQDIRKIQGEIADKLGL 232 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~l~~~i~~~l~~ 232 (390)
..+++++|+.|+||||++..++.....+.....+..+.... .....+-++..++.++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGV 314 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV 314 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCC
Confidence 47999999999999999999998764332222344554433 12333334444555544
No 287
>PRK07667 uridine kinase; Provisional
Probab=96.54 E-value=0.0037 Score=54.20 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=29.3
Q ss_pred HHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 164 NDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 164 ~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
+.+.+.+.. ++..+|+|.|.+|+||||+++.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344454443 34579999999999999999999998754
No 288
>PRK08233 hypothetical protein; Provisional
Probab=96.53 E-value=0.0022 Score=54.75 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..+|+|.|++|+||||||..+.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 289
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.51 E-value=0.0024 Score=45.18 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
+|.|.|+.|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 290
>PTZ00301 uridine kinase; Provisional
Probab=96.50 E-value=0.0069 Score=53.09 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..+|+|.|++|+||||||+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999987764
No 291
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.49 E-value=0.0037 Score=62.27 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=43.6
Q ss_pred cccccchhHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 042806 153 YEACESRMSTLNDILDALKN-----PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEV 213 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v 213 (390)
..++.-..+.++++..||.. ...+++.++||+|+||||.++.+++... |+..=|.+-
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 44555566777888888764 2357899999999999999999999874 666677643
No 292
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.48 E-value=0.0027 Score=55.73 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.+..+|+|.|++|+|||||++.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 293
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.47 E-value=0.006 Score=57.47 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=33.8
Q ss_pred cccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 155 ACESRMSTLNDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.++|+...+.++.+.+.. ....-|.|+|+.|+||+++|+.+....
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 477887777777766543 233457799999999999999997654
No 294
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.46 E-value=0.01 Score=58.00 Aligned_cols=90 Identities=19% Similarity=0.292 Sum_probs=58.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCch-----
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ-DIRKIQGEIADKLGLT-------LHEESDS----- 240 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~----- 240 (390)
+-.-++|.|.+|+|||||+..+.+..... +-+.++++.++... ...+++..+...-... ..+.+..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 44678899999999999999998887543 56788888776543 4566666665432211 1111111
Q ss_pred -HHHHHHHHHHhC--CCeEEEEEeCCC
Q 042806 241 -GRARSLRNRLKK--EKTILVILDNIW 264 (390)
Q Consensus 241 -~~~~~l~~~l~~--~~~~LlVlDdv~ 264 (390)
.....+.+++++ ++.+|+++|++.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccch
Confidence 123356666643 466999999994
No 295
>PRK06762 hypothetical protein; Provisional
Probab=96.46 E-value=0.0027 Score=53.45 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
+.+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3678999999999999999998876
No 296
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.46 E-value=0.026 Score=63.13 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.++-|.++||+|.|||.||+.++.+..+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 3567889999999999999999998754
No 297
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.45 E-value=0.022 Score=48.33 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
...++.|+|++|.|||||.+.+|...+.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 4568899999999999999999988754
No 298
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.44 E-value=0.012 Score=53.60 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
+.|.|+|.+|+||||+|+++......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999998765
No 299
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.44 E-value=0.0029 Score=55.49 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+...+|+|.|++|+|||||++.+.....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999988754
No 300
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.42 E-value=0.0029 Score=57.90 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=34.2
Q ss_pred HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHH
Q 042806 165 DILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKI 222 (390)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l 222 (390)
.+++.+...+ +-+.++|+.|+|||++++......... .| ...-++.+...+...+
T Consensus 24 ~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~-~~-~~~~~~~s~~Tts~~~ 78 (272)
T PF12775_consen 24 YLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSD-KY-LVITINFSAQTTSNQL 78 (272)
T ss_dssp HHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTC-CE-EEEEEES-TTHHHHHH
T ss_pred HHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCcc-cc-ceeEeeccCCCCHHHH
Confidence 4445444433 445799999999999999998765432 12 2445566665444444
No 301
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.42 E-value=0.0039 Score=51.66 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=24.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
..+|.|+|.+|+||||||+.+...+...
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999998765
No 302
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.42 E-value=0.014 Score=57.49 Aligned_cols=87 Identities=22% Similarity=0.260 Sum_probs=53.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CchHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE--SDSGRARSLRNRLK 251 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~ 251 (390)
...++.|.|.+|+|||||+.++.......+ ..++|++... +..++... +..++...+.. ........+.+.+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEE--SLQQIKMR-AIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcC--CHHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 457899999999999999999987764321 2467776543 44444332 33444432211 01112345556665
Q ss_pred CCCeEEEEEeCCCC
Q 042806 252 KEKTILVILDNIWG 265 (390)
Q Consensus 252 ~~~~~LlVlDdv~~ 265 (390)
..++-++|+|.+..
T Consensus 168 ~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 168 EENPQACVIDSIQT 181 (454)
T ss_pred hcCCcEEEEecchh
Confidence 55557899999864
No 303
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.41 E-value=0.0057 Score=59.74 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=38.0
Q ss_pred cccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 155 ACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.++||++.++.+...+..+. -+.|.|++|+|||+||+.+......
T Consensus 21 ~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcc
Confidence 58999999999988887543 4778999999999999999987643
No 304
>PRK05973 replicative DNA helicase; Provisional
Probab=96.40 E-value=0.026 Score=50.32 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=34.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEI 226 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i 226 (390)
...++.|.|.+|+|||+++.++....... . ..++|++... +..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-G-e~vlyfSlEe--s~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS-G-RTGVFFTLEY--TEQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc-C-CeEEEEEEeC--CHHHHHHHH
Confidence 45688899999999999999998766432 2 2355665544 456666654
No 305
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.39 E-value=0.0032 Score=54.08 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
+.++|.|.|++|+||||+++.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 306
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.39 E-value=0.011 Score=51.51 Aligned_cols=119 Identities=21% Similarity=0.181 Sum_probs=67.4
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCCeEEEEEeCCCCCHHHHHHHHHHHh--------CCCCCC
Q 042806 166 ILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETE-KLFDQVIFVEVSKIQDIRKIQGEIADKL--------GLTLHE 236 (390)
Q Consensus 166 l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~-~~f~~~~wv~v~~~~~~~~l~~~i~~~l--------~~~~~~ 236 (390)
++..|-+..-.-..|.|++|+|||||.+.+..-.... +.|-..--.-+... . +|+..+ +...+-
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer---s----EIag~~~gvpq~~~g~R~dV 200 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER---S----EIAGCLNGVPQHGRGRRMDV 200 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEecc---c----hhhccccCCchhhhhhhhhh
Confidence 5555555444457789999999999999998876543 23432221112111 1 111111 111111
Q ss_pred CCchHHHHHHHHHHhCCCeEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhh
Q 042806 237 ESDSGRARSLRNRLKKEKTILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDV 294 (390)
Q Consensus 237 ~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v 294 (390)
.+.....+-+...+++--|=++|+|.+-..++-..+... .+.|.+++.|..-..+
T Consensus 201 ld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta---~~~GVkli~TaHG~~i 255 (308)
T COG3854 201 LDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTA---LHAGVKLITTAHGNGI 255 (308)
T ss_pred cccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHH---HhcCcEEEEeeccccH
Confidence 122223344555566656679999999766555444333 3668899988875444
No 307
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.39 E-value=0.0026 Score=49.41 Aligned_cols=24 Identities=50% Similarity=0.617 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 178 LGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
|.|+|++|+|||+||+.++.+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999888754
No 308
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.37 E-value=0.013 Score=57.03 Aligned_cols=90 Identities=19% Similarity=0.297 Sum_probs=59.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCch-----
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ-DIRKIQGEIADKLGLT-------LHEESDS----- 240 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~----- 240 (390)
+-.-++|.|.+|+|||+|+..+...... .+-+.++|+.++... ...+++..+...-... ..+.+..
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 3456889999999999999999887542 234678888887654 4566666655432211 1111111
Q ss_pred -HHHHHHHHHHhC--CCeEEEEEeCCC
Q 042806 241 -GRARSLRNRLKK--EKTILVILDNIW 264 (390)
Q Consensus 241 -~~~~~l~~~l~~--~~~~LlVlDdv~ 264 (390)
.....+.++++. ++.+|+++||+.
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChH
Confidence 123466677764 577999999984
No 309
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.37 E-value=0.0037 Score=65.41 Aligned_cols=189 Identities=21% Similarity=0.152 Sum_probs=88.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh-hhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----CCchHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA-ETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHE----ESDSGRARSLRN 248 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~-~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~----~~~~~~~~~l~~ 248 (390)
...++.|+|+.|.|||||.+.+.-.. .... .++|.+...... ..+.++...++....- ..-......+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~----G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQS----GIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHh----CCCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 34789999999999999999997662 1111 112211110000 0011111111110000 000111122223
Q ss_pred HHhC-CCeEEEEEeCCCCCcccc---cc----cCCCCCCCCCcEEEEEecchhhhhhcCCCcc--eEecCCCCHHHHHHH
Q 042806 249 RLKK-EKTILVILDNIWGNLDFQ---AV----GIPHGDDRKGCKVLLTARSLDVLSRKMDSQQ--NFSVGVLKEDEAWSL 318 (390)
Q Consensus 249 ~l~~-~~~~LlVlDdv~~~~~~~---~l----~~~l~~~~~~s~IivTtr~~~v~~~~~~~~~--~~~l~~L~~~ea~~l 318 (390)
.+.. ..+-|+++|..-...+.. .+ ...+ ...|+.+|+||....+......... ...+. ++. +...
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~- 470 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS- 470 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-
Confidence 3322 234899999987543211 12 1122 2357889999998766432221111 11111 111 1111
Q ss_pred HHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCCCCCCcccchhHHHHHhhhh
Q 042806 319 FKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARALGTRDYLNGRTHWNSWGGLLQLTL 380 (390)
Q Consensus 319 f~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~~~~~~~~~~~w~~~~~~l~~~~ 380 (390)
|...+-...+. ...+-+|++++ |+|-.|..-|..+.... ...++++...|....
T Consensus 471 p~Ykl~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~----~~~~~~li~~L~~~~ 524 (771)
T TIGR01069 471 PTYKLLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEF----KEEINVLIEKLSALE 524 (771)
T ss_pred eEEEECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhh----HHHHHHHHHHHHHHH
Confidence 11111111111 23466788777 79998888888776543 456666666665543
No 310
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.36 E-value=0.013 Score=56.76 Aligned_cols=87 Identities=16% Similarity=0.278 Sum_probs=53.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCchH----
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ-DIRKIQGEIADKLGLT-------LHEESDSG---- 241 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~~---- 241 (390)
....++|.|+.|+|||||++.+..... .+.+++..++... ...++...+...-+.. ..+.+...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 456789999999999999999986432 4566667776543 3455666654432211 11111111
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 242 --RARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 242 --~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
....+.+++. .++.+|+++||+.
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChH
Confidence 2234555553 3566999999985
No 311
>PF13245 AAA_19: Part of AAA domain
Probab=96.36 E-value=0.011 Score=42.62 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=18.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
+.+++.|.|++|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45678889999999995555544443
No 312
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.35 E-value=0.04 Score=49.03 Aligned_cols=48 Identities=23% Similarity=0.224 Sum_probs=33.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGE 225 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~ 225 (390)
...++.|.|++|+|||||+.++....-.+ -...+|++... +.+++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~--~~~~i~~~ 66 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEE--SRESIIRQ 66 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHH
Confidence 45789999999999999999987654322 34567777643 44454433
No 313
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.29 E-value=0.036 Score=50.68 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=29.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVS 214 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~ 214 (390)
+.+++.++|++|+||||++..++...... . ..+..++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~-g-~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ-G-KSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-C-CEEEEEeCC
Confidence 46789999999999999999998877543 2 245555554
No 314
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.29 E-value=0.0021 Score=67.36 Aligned_cols=190 Identities=22% Similarity=0.177 Sum_probs=89.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC----CchHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE----SDSGRARSLRNR 249 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~----~~~~~~~~l~~~ 249 (390)
+.+++.|+|+.+.||||+.+.+.-..-- ..+.++|.+.... .-.++..|+..++....-. .-......+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~m---aq~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALM---AKSGLPIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHH---HHhCCCcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHHHH
Confidence 4578899999999999999998654210 1111222222110 0001111111111110000 001111222222
Q ss_pred HhC-CCeEEEEEeCCCCCcccc---cc----cCCCCCCCCCcEEEEEecchhhhhhcCCCcc--eEecCCCCHHHHHHHH
Q 042806 250 LKK-EKTILVILDNIWGNLDFQ---AV----GIPHGDDRKGCKVLLTARSLDVLSRKMDSQQ--NFSVGVLKEDEAWSLF 319 (390)
Q Consensus 250 l~~-~~~~LlVlDdv~~~~~~~---~l----~~~l~~~~~~s~IivTtr~~~v~~~~~~~~~--~~~l~~L~~~ea~~lf 319 (390)
+.. ..+-|+++|..-...+.. .+ ...+ ...|+.+|+||....+......... ...+. ++. +.....
T Consensus 402 l~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l--~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~-~~l~~~ 477 (782)
T PRK00409 402 LEKADKNSLVLFDELGAGTDPDEGAALAISILEYL--RKRGAKIIATTHYKELKALMYNREGVENASVE-FDE-ETLRPT 477 (782)
T ss_pred HHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-CcCcEE
Confidence 221 234799999987543321 12 1122 2347889999998776543222111 11111 111 111110
Q ss_pred HHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCCCCCCcccchhHHHHHhhhh
Q 042806 320 KKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARALGTRDYLNGRTHWNSWGGLLQLTL 380 (390)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~~~~~~~~~~~w~~~~~~l~~~~ 380 (390)
.+...+... ...|-+|++++ |+|-.|..-|.-+-... ....+++...|....
T Consensus 478 Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~----~~~~~~li~~l~~~~ 529 (782)
T PRK00409 478 YRLLIGIPG----KSNAFEIAKRL-GLPENIIEEAKKLIGED----KEKLNELIASLEELE 529 (782)
T ss_pred EEEeeCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHhhh----hhHHHHHHHHHHHHH
Confidence 111112111 23466788877 78988888887776554 456666666666543
No 315
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.28 E-value=0.0046 Score=49.12 Aligned_cols=40 Identities=30% Similarity=0.346 Sum_probs=22.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHH
Q 042806 178 LGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKI 222 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l 222 (390)
+.|+|.+|+||||+|+.+....... |.. |.+.....+.++
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~--f~R---Iq~tpdllPsDi 41 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS--FKR---IQFTPDLLPSDI 41 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EEE---EE--TT--HHHH
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc--eeE---EEecCCCCcccc
Confidence 5789999999999999999987643 643 333444444443
No 316
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.27 E-value=0.012 Score=56.46 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 163 LNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
++.+++.+...+...+.|.|+||.|||+|.+.+.+..+.
T Consensus 10 ~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 10 FDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 455566666667788999999999999999999988765
No 317
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.27 E-value=0.0079 Score=48.45 Aligned_cols=29 Identities=21% Similarity=0.085 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
...+|.+.|.-|+|||||++.++......
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34689999999999999999999987643
No 318
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.27 E-value=0.06 Score=44.16 Aligned_cols=110 Identities=11% Similarity=0.117 Sum_probs=73.1
Q ss_pred hhhH-HHHHHHHHhhhhhhhhhhhchhhhhhhhHhHHHHHHHHhchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 042806 2 ADII-LSVVVEVAKCLAPPIYCQMSYLRKSKYTSNLQNLKTEVGIPEAERVSKQREVDKAKRRGEEIEEYVEKWLTSVNG 80 (390)
Q Consensus 2 a~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~l~~ 80 (390)
||.+ .+|+|.+++.++..+........ .++.-++.+...++.|.....+|..+- ...+...+.=++++.+
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~--~fk~~l~~L~sTl~~i~P~i~eI~~~~-------~eld~~~~ee~e~L~~ 73 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSL--SFKSILKRLESTLESIIPIIKEIDKLN-------VELDRPRQEEIERLKE 73 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHhhhHHHHHHHHh-------hhcCCchhHHHHHHHH
Confidence 4444 44777777888777777776666 667666677777777766655555542 2333333555678888
Q ss_pred HHHHHHHhhhhhhhhccccccCcCCChhHHhhHHHHHHHHHHHHHHH
Q 042806 81 IIDEAEKFTGVDARANKRCFKGLCPNLKTRRRLSKEAERQKEAIVKV 127 (390)
Q Consensus 81 ~~~d~ed~ld~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~~ 127 (390)
...+++++++.+.... +.++...++++++|+++...+...
T Consensus 74 ~L~~g~~LV~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 74 LLEKGKELVEKCSKVR-------RWNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHHHHHHHHHHhcccc-------HHHHHhhHhHHHHHHHHHHHHHHH
Confidence 8888888887653322 234666777899999998887665
No 319
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.26 E-value=0.019 Score=53.51 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=43.2
Q ss_pred cccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 042806 155 ACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQG 224 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~ 224 (390)
.|+=.......++.++..+ +-|.|.|++|+||||+++.++...... .+.|.++...+..+++.
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~DliG 108 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDLVG 108 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhcCC
Confidence 4444445556677777543 458899999999999999999988632 34566666555555443
No 320
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.25 E-value=0.11 Score=47.74 Aligned_cols=131 Identities=11% Similarity=0.009 Sum_probs=69.0
Q ss_pred HHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhc------------CCCCeEEEEEeCCC--CCHHHHHHHHH
Q 042806 163 LNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETE------------KLFDQVIFVEVSKI--QDIRKIQGEIA 227 (390)
Q Consensus 163 ~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~------------~~f~~~~wv~v~~~--~~~~~l~~~i~ 227 (390)
-..|...+..++ .....++|+.|+||+++|..+....--. .|.|.......... ..++++ +++.
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqi-R~l~ 84 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETP-RAIK 84 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHH-HHHH
Confidence 356667776665 4678899999999999999988775321 13332211111110 122221 2222
Q ss_pred HHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecc-hhhhhhcCCCcce
Q 042806 228 DKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARS-LDVLSRKMDSQQN 304 (390)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~-~~v~~~~~~~~~~ 304 (390)
+.+...+. .++.=++|+|+++.. ..++.+...+-.-.+++.+|++|.+ ..+.+...+-...
T Consensus 85 ~~~~~~p~----------------e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~ 148 (290)
T PRK05917 85 KQIWIHPY----------------ESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLS 148 (290)
T ss_pred HHHhhCcc----------------CCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceE
Confidence 22221111 123258899999754 4556665555444456666666665 4443332333345
Q ss_pred EecCCC
Q 042806 305 FSVGVL 310 (390)
Q Consensus 305 ~~l~~L 310 (390)
+.+.++
T Consensus 149 ~~~~~~ 154 (290)
T PRK05917 149 IHIPME 154 (290)
T ss_pred EEccch
Confidence 556544
No 321
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.25 E-value=0.0095 Score=60.76 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=57.9
Q ss_pred cCcccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042806 151 KDYEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL 230 (390)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l 230 (390)
...+.++|.+..+..|...+... +.+.++|++|+||||+++.+.+.... ..++..+|+.- ...+..++++.+...+
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 34567889888888887777654 46889999999999999999987643 33566777655 4446777777777666
Q ss_pred CC
Q 042806 231 GL 232 (390)
Q Consensus 231 ~~ 232 (390)
|.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 53
No 322
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.031 Score=56.04 Aligned_cols=173 Identities=22% Similarity=0.239 Sum_probs=90.7
Q ss_pred cccchh---HHHHHHHHHhcCCC---------ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHH
Q 042806 155 ACESRM---STLNDILDALKNPD---------VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKI 222 (390)
Q Consensus 155 ~~~gR~---~~~~~l~~~L~~~~---------~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l 222 (390)
+.-|.+ +++.++++.|.++. ++=+.++||+|.|||.||+.+..+..+. | .+.|...-+
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~FV--- 220 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSDFV--- 220 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchhhh---
Confidence 455654 45667777777653 4668899999999999999999988764 2 222222111
Q ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc------------c----cccccCCCCC--CCCCcE
Q 042806 223 QGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL------------D----FQAVGIPHGD--DRKGCK 284 (390)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~----~~~l~~~l~~--~~~~s~ 284 (390)
++.-. -....+..+...-+..-||++++|.++... . +..+...... .+.|..
T Consensus 221 --emfVG--------vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvi 290 (596)
T COG0465 221 --EMFVG--------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVI 290 (596)
T ss_pred --hhhcC--------CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceE
Confidence 01000 011233344443334446999999986331 1 2222222211 123444
Q ss_pred EEEEecchhhh-hhc---CCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHH
Q 042806 285 VLLTARSLDVL-SRK---MDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVS 349 (390)
Q Consensus 285 IivTtr~~~v~-~~~---~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLa 349 (390)
|+..|...++. +.. -.-.+.+.++.-+-..-.+++.-++......+... ...|++.+-|.-.|
T Consensus 291 viaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd--l~~iAr~tpGfsGA 357 (596)
T COG0465 291 VIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVD--LKKIARGTPGFSGA 357 (596)
T ss_pred EEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCC--HHHHhhhCCCcccc
Confidence 44444444443 111 12224666666665666677776664222222211 12488888777654
No 323
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.24 E-value=0.044 Score=50.11 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=35.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
..++.|.|++|+||||++.++........ =..++|++... +..++...+..
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~-g~~vl~iS~E~--~~~~~~~r~~~ 80 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQH-GVRVGTISLEE--PVVRTARRLLG 80 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhc-CceEEEEEccc--CHHHHHHHHHH
Confidence 45888999999999999999987764321 13477776654 44555555543
No 324
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.24 E-value=0.0039 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 042806 178 LGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
|.|.|++|+||||+|+.+.+...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999988764
No 325
>PRK04040 adenylate kinase; Provisional
Probab=96.24 E-value=0.0042 Score=53.51 Aligned_cols=47 Identities=23% Similarity=0.370 Sum_probs=32.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGL 232 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~ 232 (390)
..+|+|+|++|+||||+++.+...... .+.. + +..+++..++...+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~--~~~~---~------~~g~~~~~~a~~~g~ 48 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKE--DYKI---V------NFGDVMLEVAKEEGL 48 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhcc--CCeE---E------ecchHHHHHHHHcCC
Confidence 357999999999999999999988741 1332 2 224555666666554
No 326
>PRK06217 hypothetical protein; Validated
Probab=96.24 E-value=0.023 Score=48.73 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
-|.|.|.+|+||||+++.+......
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4889999999999999999988753
No 327
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.24 E-value=0.0047 Score=52.27 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+...|.|+|++|+||||+++.+.....
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999999874
No 328
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.24 E-value=0.015 Score=49.59 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|.|+.|+|||||++.+.-..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999997764
No 329
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.23 E-value=0.011 Score=53.34 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
+|.+.|.+|+||||+|+.+......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999988754
No 330
>PRK03839 putative kinase; Provisional
Probab=96.21 E-value=0.0043 Score=53.03 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.|.|.|++|+||||+++.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999874
No 331
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.21 E-value=0.73 Score=44.31 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=38.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVS-KIQDIRKIQGEIADKLGLT 233 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~l~~~i~~~l~~~ 233 (390)
.+.+|..+|.-|+||||.+..+++..+. ..+... -|++. ..+..-+=++.++.+.+.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvl-lVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVL-LVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceE-EEecccCChHHHHHHHHHHHHcCCc
Confidence 4678999999999999999999998876 334332 22222 2333444456666666543
No 332
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.21 E-value=0.05 Score=48.75 Aligned_cols=51 Identities=14% Similarity=0.164 Sum_probs=34.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~ 227 (390)
...++.|.|++|+|||+++.+++...-..... .++|++... +..++...+.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~-~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGK-PVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCC-ceEEEeCCC--CHHHHHHHHH
Confidence 34688999999999999999998776543122 356655543 4555555553
No 333
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.20 E-value=0.0062 Score=54.31 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=40.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeC---------CCCCHHHH--HHHHHHHhCCCCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVS---------KIQDIRKI--QGEIADKLGLTLH 235 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~---------~~~~~~~l--~~~i~~~l~~~~~ 235 (390)
++..|.++||+|+||||.++.++.....+... ..-|+.. ...++++. +++++++.+..+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p--pYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP--PYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC--CeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 46678899999999999999999998765322 2222222 22345554 4577887765544
No 334
>PLN02924 thymidylate kinase
Probab=96.18 E-value=0.029 Score=49.61 Aligned_cols=53 Identities=6% Similarity=0.014 Sum_probs=34.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
...|+|-|..|+||||+++.+.+..... ++....+-.-+......+.++.++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCceeeeCCCCCChHHHHHHHHHh
Confidence 4689999999999999999999998764 3544333222222334444555443
No 335
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.17 E-value=0.011 Score=52.65 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=37.8
Q ss_pred HHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHH
Q 042806 163 LNDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQ 223 (390)
Q Consensus 163 ~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~ 223 (390)
..++++.+.. ++..+|+|.|++|+||+||+-.+......+++=-.++-|.-|.+++--.++
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 3455555543 467899999999999999999999988765333345555555566554443
No 336
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.17 E-value=0.023 Score=55.17 Aligned_cols=87 Identities=17% Similarity=0.286 Sum_probs=53.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCchH----
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ-DIRKIQGEIADKLGLT-------LHEESDSG---- 241 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~~---- 241 (390)
+...++|+|..|+|||||++.+..... .+..++..++... ...++....+..-+.. ..+.+...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 457889999999999999999887653 3456666666543 3445554444332211 11111111
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 242 --RARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 242 --~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
....+.+++. .++.+|+++||+.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 2234556663 3566999999984
No 337
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.16 E-value=0.014 Score=55.48 Aligned_cols=112 Identities=11% Similarity=0.046 Sum_probs=58.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKE 253 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (390)
....+.|.|+.|+||||+++.+...... +....++. +..+. +-........+...............+...|+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~--~~~~~i~t-iEdp~--E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~- 194 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINK--NAAGHIIT-IEDPI--EYVHRNKRSLINQREVGLDTLSFANALRAALRE- 194 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCc--CCCCEEEE-EcCCh--hhhccCccceEEccccCCCCcCHHHHHHHhhcc-
Confidence 3578999999999999999998876542 23334433 22211 111000000000000011112234445555654
Q ss_pred CeEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhh
Q 042806 254 KTILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDV 294 (390)
Q Consensus 254 ~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v 294 (390)
.+=+|++|.+.+.+.+...... ...|..++.|....+.
T Consensus 195 ~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 195 DPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNSA 232 (343)
T ss_pred CCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCH
Confidence 4479999999876655442222 2345567777776444
No 338
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.16 E-value=0.017 Score=58.98 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=52.0
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGL 232 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~ 232 (390)
...++|+++.+..+...+... +.+.++|++|+||||+++.+.+..... .|...+++. ....+..++++.++..++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~-n~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYP-NPEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEe-CCCCCchHHHHHHHHhhch
Confidence 456788888887777766654 356699999999999999999887543 333333332 3333556667777666653
No 339
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.15 E-value=0.02 Score=50.52 Aligned_cols=24 Identities=38% Similarity=0.231 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.|.|+|++|+||||+++.+.....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999987653
No 340
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.15 E-value=0.02 Score=51.39 Aligned_cols=120 Identities=23% Similarity=0.246 Sum_probs=64.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-----CCCHHHHHHHHHHHhCCCCCC-------CCchH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK-----IQDIRKIQGEIADKLGLTLHE-------ESDSG 241 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-----~~~~~~l~~~i~~~l~~~~~~-------~~~~~ 241 (390)
+..+++|+|++|+|||||++.+..-... -.+.+++.-.+ .....+-..+++..++...+. .+-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 4678999999999999999999876542 22334433221 112334455666666643221 12222
Q ss_pred HHHH-HHHHHhCCCeEEEEEeCCCCCccc---ccccCCCC--CCCCCcEEEEEecchhhhhh
Q 042806 242 RARS-LRNRLKKEKTILVILDNIWGNLDF---QAVGIPHG--DDRKGCKVLLTARSLDVLSR 297 (390)
Q Consensus 242 ~~~~-l~~~l~~~~~~LlVlDdv~~~~~~---~~l~~~l~--~~~~~s~IivTtr~~~v~~~ 297 (390)
...- +...|. .++=++|.|..-+..+. ..+...+. ....|...+..|.+-.+..+
T Consensus 115 rQRi~IARALa-l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 115 RQRIGIARALA-LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhhHHHHHHHh-hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhh
Confidence 2222 223333 34579999987654221 11111110 11235567777777666543
No 341
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.15 E-value=0.0088 Score=54.21 Aligned_cols=62 Identities=26% Similarity=0.317 Sum_probs=46.5
Q ss_pred HHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 042806 164 NDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGE 225 (390)
Q Consensus 164 ~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~ 225 (390)
.+|+..+.. ++..+|+|.|.+|+||+||.-.+......+++--.++-|.-|.+++--.++..
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 345555543 56789999999999999999999999877665556666777777776666543
No 342
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.15 E-value=0.0075 Score=51.73 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=29.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEV 213 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v 213 (390)
.++|.|+|+.|+|||||++.+....... |...+..+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccceeecc
Confidence 4789999999999999999999987643 754444433
No 343
>PRK14531 adenylate kinase; Provisional
Probab=96.14 E-value=0.015 Score=49.80 Aligned_cols=24 Identities=25% Similarity=0.128 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.|.|+|++|+||||+++.+.....
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988764
No 344
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.13 E-value=0.009 Score=51.90 Aligned_cols=125 Identities=19% Similarity=0.193 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC------CCHHH-------HHHH
Q 042806 159 RMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI------QDIRK-------IQGE 225 (390)
Q Consensus 159 R~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~------~~~~~-------l~~~ 225 (390)
+..+....++.|. +..++.+.|++|.|||.||....-+.-..+.|+.++++.-.-. +-+.+ .+.-
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p 82 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRP 82 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHH
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHH
Confidence 4445556666666 4568999999999999999999887655577888777632211 00111 1122
Q ss_pred HHHHhCCCCCCCCchHHHHHHHH----------HHhCCC---eEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEec
Q 042806 226 IADKLGLTLHEESDSGRARSLRN----------RLKKEK---TILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTAR 290 (390)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~----------~l~~~~---~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr 290 (390)
+.+.+..-.... ....+.+ +++ ++ ..+||+|++++. ..+..+.-. .+.+|++|++.-
T Consensus 83 ~~d~l~~~~~~~----~~~~~~~~~~Ie~~~~~~iR-Grt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD 154 (205)
T PF02562_consen 83 IYDALEELFGKE----KLEELIQNGKIEIEPLAFIR-GRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGD 154 (205)
T ss_dssp HHHHHTTTS-TT----CHHHHHHTTSEEEEEGGGGT-T--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE-
T ss_pred HHHHHHHHhChH----hHHHHhhcCeEEEEehhhhc-CccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecC
Confidence 222222211111 1111111 111 22 369999999765 345555333 467999999987
Q ss_pred chh
Q 042806 291 SLD 293 (390)
Q Consensus 291 ~~~ 293 (390)
...
T Consensus 155 ~~Q 157 (205)
T PF02562_consen 155 PSQ 157 (205)
T ss_dssp ---
T ss_pred cee
Confidence 543
No 345
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.11 E-value=0.035 Score=47.46 Aligned_cols=117 Identities=22% Similarity=0.262 Sum_probs=59.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC--CCCHHHHH------HHHHHHhCCCC------CCCCc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK--IQDIRKIQ------GEIADKLGLTL------HEESD 239 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~--~~~~~~l~------~~i~~~l~~~~------~~~~~ 239 (390)
+..+++|.|+.|+|||||++.+.-.... ..+.+++.-.. ..+..... .+++..++... ...+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4568999999999999999999775432 34444442111 11222211 12344444321 11121
Q ss_pred hHH-HHHHHHHHhCCCeEEEEEeCCCCCcc---cccccCCCCC-CCC-CcEEEEEecchhh
Q 042806 240 SGR-ARSLRNRLKKEKTILVILDNIWGNLD---FQAVGIPHGD-DRK-GCKVLLTARSLDV 294 (390)
Q Consensus 240 ~~~-~~~l~~~l~~~~~~LlVlDdv~~~~~---~~~l~~~l~~-~~~-~s~IivTtr~~~v 294 (390)
... .-.+...+.. ++-++++|+-...-+ .+.+...+.. ... +..||++|.....
T Consensus 101 G~~qrl~laral~~-~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 101 GERQRVLLARALAQ-EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 111 1223333433 336999998764422 2222222211 112 5678888887554
No 346
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.11 E-value=0.0053 Score=51.85 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 178 LGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
|.|+|++|+|||||++.+++..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998854
No 347
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.11 E-value=0.018 Score=55.27 Aligned_cols=47 Identities=21% Similarity=0.228 Sum_probs=35.3
Q ss_pred cccchhHHHHHHHHHhcC--------------CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 155 ACESRMSTLNDILDALKN--------------PDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.++|.++.+..+...+.. ..++-|.++|++|+|||++|+.+......
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 567777776666554442 12467889999999999999999998754
No 348
>PRK01184 hypothetical protein; Provisional
Probab=96.10 E-value=0.039 Score=47.26 Aligned_cols=21 Identities=38% Similarity=0.699 Sum_probs=17.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVAR 197 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~ 197 (390)
.+|+|+|++|+||||+++ ++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 478999999999999987 444
No 349
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.10 E-value=0.0057 Score=53.24 Aligned_cols=28 Identities=39% Similarity=0.499 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
++.+|+|.|.+|+||||+|+.++...+.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4578999999999999999999998864
No 350
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.09 E-value=0.0039 Score=52.84 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=32.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQD 218 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 218 (390)
..++.+.||.|+|||.||+.+...... +.....+-++.+....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 357889999999999999999998863 1245566666665544
No 351
>PRK14532 adenylate kinase; Provisional
Probab=96.09 E-value=0.024 Score=48.71 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 042806 178 LGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (390)
|.|.|++|+||||+++.+....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7789999999999999998765
No 352
>PRK08149 ATP synthase SpaL; Validated
Probab=96.09 E-value=0.023 Score=54.99 Aligned_cols=87 Identities=14% Similarity=0.202 Sum_probs=52.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCC-------CCCCCch-----
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK-IQDIRKIQGEIADKLGLT-------LHEESDS----- 240 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~l~~~i~~~l~~~-------~~~~~~~----- 240 (390)
+...++|+|++|+|||||++.++.... .+.+++..+.. .....++........... ..+.+..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 456789999999999999998876542 34444444543 335556666665543211 1111111
Q ss_pred -HHHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 241 -GRARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 241 -~~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
.....+.+++. .++++||++||+.
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchH
Confidence 12334555553 3566999999985
No 353
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.08 E-value=0.0055 Score=48.21 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 178 LGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
|.|+|..|+|||||++.+......
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 679999999999999999987543
No 354
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.07 E-value=0.0061 Score=51.86 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.++|.+.|++|+||||+|+.+.....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 35899999999999999999988753
No 355
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.07 E-value=0.0055 Score=52.28 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.+++|.|++|+|||||++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 356
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.05 E-value=0.08 Score=54.78 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=33.6
Q ss_pred ccccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 154 EACESRMSTLNDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+.++|....+.++.+.+.. ....-|.|+|+.|+||+++|+.+.+...
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~ 373 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESE 373 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCC
Confidence 3567777666666655542 2233477999999999999999988653
No 357
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.04 E-value=0.017 Score=51.09 Aligned_cols=52 Identities=17% Similarity=0.089 Sum_probs=32.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh-----hcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE-----TEKLFDQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~-----~~~~f~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
+..|+|++|.||||++..+..... ........+-++.........++..+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 688999999999987777777761 1122444555566655566677766665
No 358
>PRK14528 adenylate kinase; Provisional
Probab=96.04 E-value=0.023 Score=48.83 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+.|.|.|++|+||||+++.+.....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999977653
No 359
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.04 E-value=0.016 Score=58.14 Aligned_cols=61 Identities=8% Similarity=0.171 Sum_probs=43.0
Q ss_pred ccccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 042806 154 EACESRMSTLNDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI 216 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 216 (390)
..++|+...+.++.+.+.. ....-|.|+|+.|+|||++|+.+.+..... -...+.|++...
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~ 249 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAAL 249 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccC
Confidence 4688888888777776653 334567799999999999999998875422 223455555543
No 360
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.03 E-value=0.027 Score=49.43 Aligned_cols=23 Identities=39% Similarity=0.330 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 042806 178 LGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
|.|.|++|+||||+|+.+.....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999987653
No 361
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.02 E-value=0.015 Score=50.92 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQD 218 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 218 (390)
.|+|+|-||+||||++..+....-.++.|+ +.-|....+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCC
Confidence 589999999999999999777665544344 44455555544
No 362
>COG4240 Predicted kinase [General function prediction only]
Probab=96.02 E-value=0.05 Score=47.41 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=51.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC-----CCCCCCCchHHHHHHH
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLG-----LTLHEESDSGRARSLR 247 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~-----~~~~~~~~~~~~~~l~ 247 (390)
+++-+++|.|+.|+||||++..+++....++. ..+...++..-+-...-.-.++++.. ...+...+..+...+.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 56778999999999999999999999887643 46666666554433333334444432 1223334555556666
Q ss_pred HHHhCCC
Q 042806 248 NRLKKEK 254 (390)
Q Consensus 248 ~~l~~~~ 254 (390)
+.+.+++
T Consensus 127 nai~~g~ 133 (300)
T COG4240 127 NAIARGG 133 (300)
T ss_pred HHHhcCC
Confidence 6665443
No 363
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.43 Score=42.61 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=58.9
Q ss_pred ccCcccccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 042806 150 IKDYEACESRMSTLNDILDALKN-------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI 216 (390)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 216 (390)
...+.++.|-+..+++|++.+.- ..++-+..|||+|.|||-+|+..+...... |-..+ .
T Consensus 167 tE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT--FLKLA-----g- 238 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT--FLKLA-----G- 238 (424)
T ss_pred cccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch--HHHhc-----c-
Confidence 33456778888999999887642 135668899999999999999887654322 31100 0
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCC
Q 042806 217 QDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIW 264 (390)
Q Consensus 217 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~ 264 (390)
-++.+-+-. +-..++.......+.+.+.+|.+|.+.
T Consensus 239 -------PQLVQMfIG-----dGAkLVRDAFaLAKEkaP~IIFIDElD 274 (424)
T KOG0652|consen 239 -------PQLVQMFIG-----DGAKLVRDAFALAKEKAPTIIFIDELD 274 (424)
T ss_pred -------hHHHhhhhc-----chHHHHHHHHHHhhccCCeEEEEechh
Confidence 011111110 223344444445566788999999885
No 364
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.02 E-value=0.067 Score=53.69 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=35.4
Q ss_pred ccccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 154 EACESRMSTLNDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
..++|....+.++.+.+.. ....-|.|+|+.|+||+++|+.+.+.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 3578888777777776542 33456789999999999999999886
No 365
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.01 E-value=0.023 Score=48.12 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=43.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---C-chHHHHHHHHHHhC
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE---S-DSGRARSLRNRLKK 252 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~---~-~~~~~~~l~~~l~~ 252 (390)
.+.|.|.+|+||||+|..+...... ..+|+.-... .-.+....|..........- . ...+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 6889999999999999999876432 1334443333 33445555544443222211 1 11222223222332
Q ss_pred CCeEEEEEeCCC
Q 042806 253 EKTILVILDNIW 264 (390)
Q Consensus 253 ~~~~LlVlDdv~ 264 (390)
. -++++|.+.
T Consensus 77 ~--~~VlID~Lt 86 (170)
T PRK05800 77 G--RCVLVDCLT 86 (170)
T ss_pred C--CEEEehhHH
Confidence 2 378999873
No 366
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.01 E-value=0.029 Score=54.76 Aligned_cols=90 Identities=19% Similarity=0.332 Sum_probs=56.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCchH----
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ-DIRKIQGEIADKLGLT-------LHEESDSG---- 241 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~~---- 241 (390)
+-.-++|.|.+|+|||||+..+........ -+.++++.++... ...+++..+...-... ..+.+...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 446788999999999999999877765321 2467777776543 4566666665432221 11111111
Q ss_pred --HHHHHHHHHh--CCCeEEEEEeCCC
Q 042806 242 --RARSLRNRLK--KEKTILVILDNIW 264 (390)
Q Consensus 242 --~~~~l~~~l~--~~~~~LlVlDdv~ 264 (390)
..-.+.++++ .++++||++|++.
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchH
Confidence 2335666663 3566999999984
No 367
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.00 E-value=0.0051 Score=53.50 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
+|+|.|++|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 368
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.00 E-value=0.023 Score=47.31 Aligned_cols=114 Identities=24% Similarity=0.186 Sum_probs=60.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC---CCCHHHHHHHHHHHh-----CCC--CCCCCchH----
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK---IQDIRKIQGEIADKL-----GLT--LHEESDSG---- 241 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~---~~~~~~l~~~i~~~l-----~~~--~~~~~~~~---- 241 (390)
..|-|++..|.||||+|....-..-.. .+. +.++.+-. ......+++.+- .+ +.. ....+...
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~~-v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH-GYR-VGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-CCe-EEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 467899999999999999888776543 233 33333322 233444443330 01 110 00011111
Q ss_pred ---HHHHHHHHHhCCCeEEEEEeCCCCC-----cccccccCCCCCCCCCcEEEEEecch
Q 042806 242 ---RARSLRNRLKKEKTILVILDNIWGN-----LDFQAVGIPHGDDRKGCKVLLTARSL 292 (390)
Q Consensus 242 ---~~~~l~~~l~~~~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~s~IivTtr~~ 292 (390)
......+.+..+.-=|+|||++-.. ...+.+...+....++.-+|+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1123334444555349999998432 23333434444445567899999984
No 369
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.99 E-value=0.034 Score=54.14 Aligned_cols=90 Identities=18% Similarity=0.321 Sum_probs=58.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCC-------CCCCCchH----
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI-QDIRKIQGEIADKLGLT-------LHEESDSG---- 241 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~l~~~i~~~l~~~-------~~~~~~~~---- 241 (390)
+-.-++|.|.+|+|||||+..+....... +-..++++-++.. ....+++..+...-... ..+.+...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 44678899999999999999998776432 2346778877654 34566777665432211 11111111
Q ss_pred --HHHHHHHHHhC--CCeEEEEEeCCC
Q 042806 242 --RARSLRNRLKK--EKTILVILDNIW 264 (390)
Q Consensus 242 --~~~~l~~~l~~--~~~~LlVlDdv~ 264 (390)
..-.+.++++. ++.+||++||+.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchh
Confidence 23456677754 567999999985
No 370
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.99 E-value=0.02 Score=47.35 Aligned_cols=21 Identities=38% Similarity=0.377 Sum_probs=19.1
Q ss_pred EEcCCCCcHHHHHHHHHHHhh
Q 042806 180 IYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 180 I~G~~GvGKTtLa~~v~~~~~ 200 (390)
|.|++|+||||+++.+.....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHhcC
Confidence 689999999999999999763
No 371
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.99 E-value=0.043 Score=54.66 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=34.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCC-CeEEEEEeCCCCCHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLF-DQVIFVEVSKIQDIRKIQGE 225 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f-~~~~wv~v~~~~~~~~l~~~ 225 (390)
..+++.|.|++|+|||||+.++....-.+ + ...+||+... +.+++.+.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~--~ge~~lyvs~eE--~~~~l~~~ 68 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH--FDEPGVFVTFEE--SPQDIIKN 68 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEec--CHHHHHHH
Confidence 56899999999999999999997653221 2 3577887753 45555544
No 372
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.98 E-value=0.026 Score=54.86 Aligned_cols=88 Identities=19% Similarity=0.273 Sum_probs=48.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh-----CCC-CCCCCchH------
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL-----GLT-LHEESDSG------ 241 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l-----~~~-~~~~~~~~------ 241 (390)
....++|+|+.|+|||||++.+...... ..++++..-....+..++........ +.- ..+.+...
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 3457999999999999999888654321 22333333223344555444333322 111 11111111
Q ss_pred HHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 242 RARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 242 ~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
..-.+.+++. .++.+|+++||+.
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchH
Confidence 2234555553 3566999999984
No 373
>PRK00625 shikimate kinase; Provisional
Probab=95.98 E-value=0.0063 Score=51.67 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.|.|+|++|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 374
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.98 E-value=0.02 Score=54.03 Aligned_cols=64 Identities=19% Similarity=0.123 Sum_probs=47.4
Q ss_pred cccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 042806 155 ACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGE 225 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~ 225 (390)
.++|++.....+...+..+ +-+.+.|++|+|||+||+.+....... ...|.+.......++...
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~~~-----~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALGLP-----FVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhCCC-----eEEEecCCCCCHHHhcCc
Confidence 4777777777776666543 346789999999999999999988632 466677777777776544
No 375
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.94 E-value=0.056 Score=45.60 Aligned_cols=115 Identities=19% Similarity=0.101 Sum_probs=62.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeE--EEEEeCCCCCHHHHHHHHHHHh-----CC--CCCCCCch---H-
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQV--IFVEVSKIQDIRKIQGEIADKL-----GL--TLHEESDS---G- 241 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~--~wv~v~~~~~~~~l~~~i~~~l-----~~--~~~~~~~~---~- 241 (390)
...|-|++..|.||||.|..+.-.....+ +.+. -|+--........++..+ .+ +. .+...+.. .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-KKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-CeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 35788899999999999999888765432 4321 133322223333444332 11 11 11111111 1
Q ss_pred ---HHHHHHHHHhCCCeEEEEEeCCCC-----CcccccccCCCCCCCCCcEEEEEecch
Q 042806 242 ---RARSLRNRLKKEKTILVILDNIWG-----NLDFQAVGIPHGDDRKGCKVLLTARSL 292 (390)
Q Consensus 242 ---~~~~l~~~l~~~~~~LlVlDdv~~-----~~~~~~l~~~l~~~~~~s~IivTtr~~ 292 (390)
......+.+..++-=|+|||.+-. .-..+.+...+....++..||+|.|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 122344445555534999999842 223334444444455677899999974
No 376
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.94 E-value=0.028 Score=47.43 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=28.9
Q ss_pred cchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 157 ESRMSTLNDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 157 ~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+|....+.++++.+.. ....-|.|+|+.|+||+.+|+.+.+...
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~ 47 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP 47 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh
Confidence 4555555555555432 2234566999999999999999988643
No 377
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.93 E-value=0.0085 Score=50.63 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
..++++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4678999999999999999999988764
No 378
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.93 E-value=0.006 Score=50.39 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 379
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.93 E-value=0.011 Score=49.31 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 161 STLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 161 ~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..+++|.+.|.+ +++++.|+.|+|||||+..+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 446777777764 789999999999999999998764
No 380
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.92 E-value=0.026 Score=54.75 Aligned_cols=87 Identities=21% Similarity=0.349 Sum_probs=53.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCchH----
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ-DIRKIQGEIADKLGLT-------LHEESDSG---- 241 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~~---- 241 (390)
+...++|.|..|+|||||++.+++... .+.++++.++... ...++....+..-+.. ..+.+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 456789999999999999999988653 4567788776543 4455554433322111 11111111
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 242 --RARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 242 --~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
....+.++++ .++++|+++||+.
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 1234555553 3566999999985
No 381
>PLN02165 adenylate isopentenyltransferase
Probab=95.91 E-value=0.011 Score=55.21 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=26.2
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 170 LKNPDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 170 L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+.+....+++|+|+.|+|||||+..++....
T Consensus 38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 38 EQNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred ccCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 3455667999999999999999999988854
No 382
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.91 E-value=0.042 Score=46.26 Aligned_cols=27 Identities=26% Similarity=0.164 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...+++|.|+.|+|||||++.+.-...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999987653
No 383
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.90 E-value=0.033 Score=51.83 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=29.6
Q ss_pred HHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 164 NDILDALK--NPDVNMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 164 ~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
..+++.+. .+...+|.|.|++|+|||||+..+.......
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 33444443 2467899999999999999999998876543
No 384
>PRK14529 adenylate kinase; Provisional
Probab=95.89 E-value=0.031 Score=49.35 Aligned_cols=84 Identities=19% Similarity=0.148 Sum_probs=46.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCe--EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 042806 178 LGIYGMGGIVKTTLAKEVARKAETEKLFDQ--VIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKT 255 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~~~~~~f~~--~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 255 (390)
|.|.|++|+||||+++.+....... ++.. .+.-.+..........+.++.. ....++.-....+.+.+.....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~----G~lvpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDR----GDLVPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhc----cCcchHHHHHHHHHHHHhccCC
Confidence 7789999999999999998887532 2221 1111122222222333333322 2222444455556666654223
Q ss_pred EEEEEeCCCCC
Q 042806 256 ILVILDNIWGN 266 (390)
Q Consensus 256 ~LlVlDdv~~~ 266 (390)
--+|||+.-..
T Consensus 78 ~g~iLDGfPRt 88 (223)
T PRK14529 78 NGWLLDGFPRN 88 (223)
T ss_pred CcEEEeCCCCC
Confidence 56999999644
No 385
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.89 E-value=0.029 Score=58.73 Aligned_cols=126 Identities=21% Similarity=0.193 Sum_probs=72.3
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC----
Q 042806 162 TLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE---- 237 (390)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~---- 237 (390)
...+|++.+. +..++.|.|+.|+||||-.-+++.+..- .....+-+.=........+...++.+++....+.
T Consensus 54 ~~~~i~~ai~--~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~ 129 (845)
T COG1643 54 VRDEILKAIE--QNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYS 129 (845)
T ss_pred HHHHHHHHHH--hCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEE
Confidence 3456666665 3468899999999999999999887642 1222333322333456677888888887642211
Q ss_pred ----------------CchHHHHHHHH-HHhCCCeEEEEEeCCCCCccccc-----ccCCCCCCCCCcEEEEEecch
Q 042806 238 ----------------SDSGRARSLRN-RLKKEKTILVILDNIWGNLDFQA-----VGIPHGDDRKGCKVLLTARSL 292 (390)
Q Consensus 238 ----------------~~~~~~~~l~~-~l~~~~~~LlVlDdv~~~~~~~~-----l~~~l~~~~~~s~IivTtr~~ 292 (390)
.+.-++..+.+ .+.++- -.+|+|.++...--.+ ++..+....+..||||+|-.-
T Consensus 130 iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~y-s~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATl 205 (845)
T COG1643 130 IRFESKVSPRTRIKVMTDGILLREIQNDPLLSGY-SVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATL 205 (845)
T ss_pred EEeeccCCCCceeEEeccHHHHHHHhhCcccccC-CEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 11222233331 222333 4899999986632111 111122223348999999863
No 386
>PHA02774 E1; Provisional
Probab=95.87 E-value=0.015 Score=57.74 Aligned_cols=49 Identities=27% Similarity=0.305 Sum_probs=35.2
Q ss_pred HHHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeC
Q 042806 162 TLNDILDALKN-PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVS 214 (390)
Q Consensus 162 ~~~~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~ 214 (390)
-+..|..+|.+ ++...+.|+||+|.|||.+|..+.+-.. -..+.|++..
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~~ 469 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNSK 469 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEECc
Confidence 34555556554 3346899999999999999999998864 2345677653
No 387
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.86 E-value=0.0076 Score=51.83 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..++|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998764
No 388
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.86 E-value=0.037 Score=54.15 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=57.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCC--CeEEEEEeCCC-CCHHHHHHHHHHHhCCCC-------CCCCch---
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLF--DQVIFVEVSKI-QDIRKIQGEIADKLGLTL-------HEESDS--- 240 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f--~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~-------~~~~~~--- 240 (390)
.-.-++|.|..|+|||||+..+.+.....+.+ ..++++.++.. ....+++..+...-.... .+.+..
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 34568899999999999999998876432111 15677777654 356666666654332211 111111
Q ss_pred ---HHHHHHHHHHh--CCCeEEEEEeCCC
Q 042806 241 ---GRARSLRNRLK--KEKTILVILDNIW 264 (390)
Q Consensus 241 ---~~~~~l~~~l~--~~~~~LlVlDdv~ 264 (390)
.....+.+++. .++++||++||+.
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcChh
Confidence 12345777776 4677999999984
No 389
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.85 E-value=0.033 Score=55.39 Aligned_cols=90 Identities=19% Similarity=0.140 Sum_probs=49.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEE-EEEeCCCC-CHHHHHHHHHHHhCCCCCCCCc------hHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVI-FVEVSKIQ-DIRKIQGEIADKLGLTLHEESD------SGRARS 245 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~-wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~------~~~~~~ 245 (390)
.-.-..|+|++|+|||||++.+.+.... .+-++.+ ++-|.... .+.++.+.+-..+-....+.+. ..+...
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999987643 2334433 44555433 2333322221111111111111 112334
Q ss_pred HHHHHh-CCCeEEEEEeCCC
Q 042806 246 LRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 246 l~~~l~-~~~~~LlVlDdv~ 264 (390)
+.+++. .++.+||++|++.
T Consensus 494 ~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHcCCCEEEEEeCch
Confidence 445553 4566999999985
No 390
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.83 E-value=0.0069 Score=51.68 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
++|+|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999998854
No 391
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.83 E-value=0.0074 Score=49.44 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+|.|.|++|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 392
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.0062 Score=49.30 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=41.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEK 254 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 254 (390)
.+-|.|.|.+|+|||||+.++..... .-|+++|.....++++..--.. ......+.......|-..+..+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~vkEn~l~~gyDE~--y~c~i~DEdkv~D~Le~~m~~Gg 77 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDLVKENNLYEGYDEE--YKCHILDEDKVLDELEPLMIEGG 77 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhHHhhhcchhccccc--ccCccccHHHHHHHHHHHHhcCC
Confidence 35588999999999999999986553 3467776643333332211100 01112244555666666665555
No 393
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.82 E-value=0.056 Score=48.46 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+..|+|++|+|||+|+.+++-...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999987653
No 394
>PRK05922 type III secretion system ATPase; Validated
Probab=95.82 E-value=0.034 Score=53.93 Aligned_cols=87 Identities=14% Similarity=0.263 Sum_probs=51.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC-------CCCCchH----
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK-IQDIRKIQGEIADKLGLTL-------HEESDSG---- 241 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~-------~~~~~~~---- 241 (390)
+...++|+|+.|+|||||++.+..... .+...++.++. .....+.+.+....+.... .+.+...
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 445689999999999999999886543 34445444443 2344555555544332211 1111111
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 242 --RARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 242 --~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
....+.+++. .++++|+++||+.
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 2334556663 3566999999985
No 395
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.82 E-value=0.043 Score=47.02 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=25.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
....++.|.|.+|+||||+++.+......
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45679999999999999999999988753
No 396
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.81 E-value=0.041 Score=53.99 Aligned_cols=90 Identities=18% Similarity=0.263 Sum_probs=57.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC--------------CCCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ-DIRKIQGEIADKLGLTL--------------HEES 238 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~--------------~~~~ 238 (390)
+-.-++|.|.+|+|||||+..+....... +=+.++++-++... ...+++..+...-.... .+.+
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 44678899999999999999888773321 12678888887654 45667766655211110 1111
Q ss_pred ch------HHHHHHHHHHhC--CCeEEEEEeCCC
Q 042806 239 DS------GRARSLRNRLKK--EKTILVILDNIW 264 (390)
Q Consensus 239 ~~------~~~~~l~~~l~~--~~~~LlVlDdv~ 264 (390)
.. .....+.+++++ ++.+||++||+.
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslT 272 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIF 272 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccch
Confidence 11 123457777754 436999999985
No 397
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.79 E-value=0.0079 Score=51.41 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
+|+|.|.+|+|||||++.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999988753
No 398
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.79 E-value=0.015 Score=54.94 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=43.4
Q ss_pred cCcccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 151 KDYEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.|...++|-++.+..|+..+.++...-+.|.|+.|+||||+|+.+++-...
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~ 64 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPE 64 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 345578999998888988888888888889999999999999999887653
No 399
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.79 E-value=0.0075 Score=51.80 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998875
No 400
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.77 E-value=0.0092 Score=52.12 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+|+|+|++|+|||||++.+....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998875
No 401
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.069 Score=49.88 Aligned_cols=29 Identities=34% Similarity=0.418 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
.++-|.++||+|.|||-||+.+..+....
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~ 154 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGAN 154 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCC
Confidence 35678899999999999999999987643
No 402
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.76 E-value=0.059 Score=54.15 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=55.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------------CC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLH----------------EE 237 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~----------------~~ 237 (390)
...++.|.|++|+|||+|+.++....... -..++|++... +..++...+ ..++.+.. ..
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~--~~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 346 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAACRR--GERCLLFAFEE--SRAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESY 346 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC--CHHHHHHHH-HHcCCChHHHhhcCCceeecCCcccC
Confidence 45788999999999999999998775432 34577877655 455555544 34443211 11
Q ss_pred CchHHHHHHHHHHhCCCeEEEEEeCCC
Q 042806 238 SDSGRARSLRNRLKKEKTILVILDNIW 264 (390)
Q Consensus 238 ~~~~~~~~l~~~l~~~~~~LlVlDdv~ 264 (390)
........+...+...+.-++|+|.+.
T Consensus 347 ~~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 347 GLEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 123344556666655455689999984
No 403
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.76 E-value=0.043 Score=49.80 Aligned_cols=95 Identities=12% Similarity=0.162 Sum_probs=53.9
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCchH--
Q 042806 174 DVNMLGIYGMGGIVKTTLA-KEVARKAETEKLFDQV-IFVEVSKIQ-DIRKIQGEIADKLGLT-------LHEESDSG-- 241 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa-~~v~~~~~~~~~f~~~-~wv~v~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~~-- 241 (390)
+-.-++|.|.+|+|||+|+ ..+.+.. .-+.. +++.+.... ...++...+...-... ..+.+...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 3456889999999999995 5555442 13434 666776543 4566666665432111 11111111
Q ss_pred ----HHHHHHHHHhC-CCeEEEEEeCCCCC-cccccc
Q 042806 242 ----RARSLRNRLKK-EKTILVILDNIWGN-LDFQAV 272 (390)
Q Consensus 242 ----~~~~l~~~l~~-~~~~LlVlDdv~~~-~~~~~l 272 (390)
..-.+.+++.. ++.+|+++||+... ..++++
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 12344555543 46699999999544 344444
No 404
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.76 E-value=0.042 Score=53.40 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=57.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh-----------cCCCCeEEEEEeCCCCCHHHHHHHHHHHhC-CCC-------
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET-----------EKLFDQVIFVEVSKIQDIRKIQGEIADKLG-LTL------- 234 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~-----------~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~-~~~------- 234 (390)
+-.-++|.|.+|+|||||+..+.+.... ++.-..+++..++......+.+...+..-+ ...
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 3456889999999999999999887641 001116677788777665565555555544 211
Q ss_pred CCCCchH------HHHHHHHHHh--CCCeEEEEEeCCC
Q 042806 235 HEESDSG------RARSLRNRLK--KEKTILVILDNIW 264 (390)
Q Consensus 235 ~~~~~~~------~~~~l~~~l~--~~~~~LlVlDdv~ 264 (390)
.+.+... ..-.+.+++. .++++|+++||+.
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 1111111 2335667776 3567999999984
No 405
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.75 E-value=0.065 Score=53.85 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=35.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEI 226 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i 226 (390)
..+++.|.|.+|+|||+|+.++......+ +=..++|++... +.+++...+
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~-~ge~~lyis~ee--~~~~i~~~~ 79 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKR-FDEPGVFVTFEE--SPEDIIRNV 79 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCEEEEEccC--CHHHHHHHH
Confidence 56899999999999999999997664432 113467776655 455655554
No 406
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.74 E-value=0.082 Score=49.59 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=36.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ-DIRKIQGEI 226 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~l~~~i 226 (390)
+-..++|.|..|+|||+|++++.+... -+.++++.++... .+.+++.++
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHH
Confidence 345788999999999999999988643 4578888887643 455555554
No 407
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.73 E-value=0.037 Score=50.67 Aligned_cols=88 Identities=23% Similarity=0.367 Sum_probs=51.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh-cCCCC-------eEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCC---------
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAET-EKLFD-------QVIFVEVSKI-QDIRKIQGEIADKLGLTLHEES--------- 238 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~-~~~f~-------~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~~~~--------- 238 (390)
+..|+|.+|+|||||+...+-.... ++.|. .+++|++... .++-.-++.+...++..+.+..
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~G 170 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVSG 170 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheecccccc
Confidence 4457799999999999988776533 23343 4566665432 2333334456666665432210
Q ss_pred --c------hHHHHHHHHHHhCCCeEEEEEeCCC
Q 042806 239 --D------SGRARSLRNRLKKEKTILVILDNIW 264 (390)
Q Consensus 239 --~------~~~~~~l~~~l~~~~~~LlVlDdv~ 264 (390)
. ..+..+....+...++-++|+|-+-
T Consensus 171 aa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v 204 (402)
T COG3598 171 AADESDVLSPKLYRRFEKILEQKRPDFVVIDPFV 204 (402)
T ss_pred CCCccccccHHHHHHHHHHHHHhCCCeEEEcchh
Confidence 0 0223444445556777899999764
No 408
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.73 E-value=0.085 Score=51.90 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=52.6
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHHHHhhh-----cCCCCeEEEEEeCCCCC-HHHHHHHHHHHhC-CCC-------CCCC
Q 042806 174 DVNMLGIYGMGGIVKTTLA-KEVARKAET-----EKLFDQVIFVEVSKIQD-IRKIQGEIADKLG-LTL-------HEES 238 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa-~~v~~~~~~-----~~~f~~~~wv~v~~~~~-~~~l~~~i~~~l~-~~~-------~~~~ 238 (390)
+-.-++|.|..|+|||+|| -.+.+.... .++-..++|+.+++..+ ..+ +...+.+-+ ... .+.+
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCCC
Confidence 3456889999999999996 566666422 12345788999987654 344 333333333 111 1111
Q ss_pred chH------HHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 239 DSG------RARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 239 ~~~------~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
... ..-.+.+++. .++.+|+|+||+.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 111 1234555553 3566999999995
No 409
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.71 E-value=0.0095 Score=52.17 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
..++|.|+|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5678999999999999999999754
No 410
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.054 Score=47.90 Aligned_cols=72 Identities=25% Similarity=0.279 Sum_probs=46.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKK 252 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (390)
+.++-+.++|++|.|||-|++.++++... .|+.+... ++. -+.+|.. -..+..+....+.
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a-------~firvvgs----efv---qkylgeg------prmvrdvfrlake 246 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTA-------AFIRVVGS----EFV---QKYLGEG------PRMVRDVFRLAKE 246 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccch-------heeeeccH----HHH---HHHhccC------cHHHHHHHHHHhc
Confidence 45778889999999999999999987653 33433321 111 1223321 1244555555556
Q ss_pred CCeEEEEEeCCC
Q 042806 253 EKTILVILDNIW 264 (390)
Q Consensus 253 ~~~~LlVlDdv~ 264 (390)
+-+-++.+|.+.
T Consensus 247 napsiifideid 258 (408)
T KOG0727|consen 247 NAPSIIFIDEID 258 (408)
T ss_pred cCCcEEEeehhh
Confidence 667899999885
No 411
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.71 E-value=0.027 Score=51.38 Aligned_cols=117 Identities=21% Similarity=0.166 Sum_probs=59.4
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHH
Q 042806 164 NDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRA 243 (390)
Q Consensus 164 ~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~ 243 (390)
+.+..++ .....++.|.|+.|+||||+++.+.+..... -..++.+.-+..+....+ .++... ........
T Consensus 70 ~~l~~~~-~~~~GlilisG~tGSGKTT~l~all~~i~~~--~~~iitiEdp~E~~~~~~-----~q~~v~--~~~~~~~~ 139 (264)
T cd01129 70 EIFRKLL-EKPHGIILVTGPTGSGKTTTLYSALSELNTP--EKNIITVEDPVEYQIPGI-----NQVQVN--EKAGLTFA 139 (264)
T ss_pred HHHHHHH-hcCCCEEEEECCCCCcHHHHHHHHHhhhCCC--CCeEEEECCCceecCCCc-----eEEEeC--CcCCcCHH
Confidence 3343333 3445689999999999999999887765321 112333221111111100 011111 11112234
Q ss_pred HHHHHHHhCCCeEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhh
Q 042806 244 RSLRNRLKKEKTILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDV 294 (390)
Q Consensus 244 ~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v 294 (390)
..+...++. .+=.++++++.+.+....+... ...|..++.|....+.
T Consensus 140 ~~l~~~lR~-~PD~i~vgEiR~~e~a~~~~~a---a~tGh~v~tTlHa~~~ 186 (264)
T cd01129 140 RGLRAILRQ-DPDIIMVGEIRDAETAEIAVQA---ALTGHLVLSTLHTNDA 186 (264)
T ss_pred HHHHHHhcc-CCCEEEeccCCCHHHHHHHHHH---HHcCCcEEEEeccCCH
Confidence 445555544 4478999999887654433222 1234446666665443
No 412
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.70 E-value=0.035 Score=47.89 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
+|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998753
No 413
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.70 E-value=0.066 Score=50.08 Aligned_cols=87 Identities=22% Similarity=0.335 Sum_probs=51.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCC-------CCCCCchH----
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVS-KIQDIRKIQGEIADKLGLT-------LHEESDSG---- 241 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~l~~~i~~~l~~~-------~~~~~~~~---- 241 (390)
....++|.|+.|+|||||++.+..... .+..++..+. ......++.......-+.. ..+.+...
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 446789999999999999998886543 3344444444 3335555555554433221 11111111
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 242 --RARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 242 --~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
....+.+++. .++.+|+++||+.
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccch
Confidence 2234445553 3556999999984
No 414
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.70 E-value=0.0082 Score=48.88 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+|+|+|+.|+|||||++.+.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999988653
No 415
>PRK07933 thymidylate kinase; Validated
Probab=95.70 E-value=0.058 Score=47.49 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
+|+|-|+-|+||||+++.+.+....+
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~ 27 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEAR 27 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 68999999999999999999998764
No 416
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.70 E-value=0.04 Score=53.28 Aligned_cols=87 Identities=23% Similarity=0.364 Sum_probs=50.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCC-------CCCCCchH----
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI-QDIRKIQGEIADKLGLT-------LHEESDSG---- 241 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~l~~~i~~~l~~~-------~~~~~~~~---- 241 (390)
+...++|.|..|+|||||++.+..... .+..++..+... ....++...+...-... ..+.+...
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 456789999999999999988876543 344455555543 23444444443332111 11111111
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 242 --RARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 242 --~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
....+.+++. .++.+|+++||+.
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeChH
Confidence 2234555553 3556999999984
No 417
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.69 E-value=0.037 Score=49.91 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
+|+|.|.+|+||||+++.+....+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999887754
No 418
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.69 E-value=0.012 Score=50.06 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
...+|.|.|++|+||||+++.+......
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999998754
No 419
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.69 E-value=0.017 Score=48.11 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVE 212 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~ 212 (390)
++.|+|+.|+|||||+..+......+ .+...+.-+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEec
Confidence 57899999999999999999988653 465554443
No 420
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.68 E-value=0.012 Score=51.58 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=26.8
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 170 LKNPDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 170 L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+...++++|+++|..|+|||||...+.+...
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445789999999999999999999988754
No 421
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.66 E-value=0.03 Score=57.03 Aligned_cols=53 Identities=13% Similarity=-0.024 Sum_probs=34.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcC-CCCeEEEEEeCCCCCHHHHHHHHH
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEK-LFDQVIFVEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~-~f~~~~wv~v~~~~~~~~l~~~i~ 227 (390)
.++..|.|.+|.||||+++.+........ .-...+.+.....-....+...+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 46888999999999999999988764321 112355555555444444444443
No 422
>PRK14530 adenylate kinase; Provisional
Probab=95.66 E-value=0.01 Score=52.27 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+.|.|.|++|+||||+++.+.....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999987763
No 423
>PRK05748 replicative DNA helicase; Provisional
Probab=95.65 E-value=0.45 Score=46.99 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=37.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL 230 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l 230 (390)
...++.|-|.+|+|||+++.++......+.+. .++|+ |-.-+..++...++...
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g~-~v~~f--SlEms~~~l~~R~l~~~ 255 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATKTDK-NVAIF--SLEMGAESLVMRMLCAE 255 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHhCCC-eEEEE--eCCCCHHHHHHHHHHHh
Confidence 34678899999999999999998875433223 34444 44456677777775444
No 424
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.65 E-value=0.013 Score=51.88 Aligned_cols=24 Identities=21% Similarity=-0.036 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVAR 197 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~ 197 (390)
..+++.|.|+.|.||||+.+.+.-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999977
No 425
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.0092 Score=49.70 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 042806 177 MLGIYGMGGIVKTTLAKEVA 196 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~ 196 (390)
.|.|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999997
No 426
>PRK13975 thymidylate kinase; Provisional
Probab=95.63 E-value=0.011 Score=51.20 Aligned_cols=26 Identities=35% Similarity=0.366 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.+|+|.|+.|+||||+++.+......
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999998753
No 427
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.63 E-value=0.0083 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 042806 178 LGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (390)
|.|+|++|+||||+++.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998876
No 428
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.62 E-value=0.0096 Score=51.49 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=26.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVE 212 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~ 212 (390)
...+++|.||+|+|||||.+.+..-... -.+.+|+.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~ 62 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVD 62 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEEC
Confidence 4568999999999999999988543321 23456653
No 429
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.063 Score=56.27 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=60.4
Q ss_pred ccchhHHHHHHHHHhcC------C--CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 042806 156 CESRMSTLNDILDALKN------P--DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 156 ~~gR~~~~~~l~~~L~~------~--~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~ 227 (390)
++|-++.+..|.+.+.. + ....+.+.||.|+|||-||+.+....-.. .+..+-++. .+... +.
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs--e~~~IriDm------se~~e-vs 634 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS--EENFIRLDM------SEFQE-VS 634 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC--ccceEEech------hhhhh-hh
Confidence 44555555666665543 1 24567789999999999999998887322 333333333 33333 33
Q ss_pred HHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 042806 228 DKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN 266 (390)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 266 (390)
+..+.+ +..--......|.+.++.+...+|.||||+..
T Consensus 635 kligsp-~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 635 KLIGSP-PGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hccCCC-cccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 333332 22222234457888888766578899999744
No 430
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.60 E-value=0.037 Score=48.14 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=24.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
..+|+|.|+.|+||||+++.+.+.....
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999987543
No 431
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.59 E-value=0.033 Score=53.96 Aligned_cols=87 Identities=24% Similarity=0.375 Sum_probs=50.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC-------CCCCchH----
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK-IQDIRKIQGEIADKLGLTL-------HEESDSG---- 241 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~-------~~~~~~~---- 241 (390)
+...++|+|..|+|||||++.+..... .+......+.. .....++....+..-+... .+.+...
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 446789999999999999988876543 23333333333 3345555555443322211 1111111
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 242 --RARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 242 --~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
....+.+++. .++.+|+++||+.
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 2234556663 3556999999985
No 432
>PRK13949 shikimate kinase; Provisional
Probab=95.59 E-value=0.011 Score=50.08 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
-|.|+|++|+||||+++.+.....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998875
No 433
>PRK13947 shikimate kinase; Provisional
Probab=95.59 E-value=0.011 Score=50.00 Aligned_cols=25 Identities=32% Similarity=0.314 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
-|.|+|++|+||||+++.+.+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999988753
No 434
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.57 E-value=2.6 Score=41.26 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=37.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL 230 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l 230 (390)
..++.|-|.+|+|||+++..+......+..+ .++|++ -.-+..++...++...
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~-~v~~fS--lEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGK-PVLFFS--LEMSAEQLGERLLASK 246 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCC-cEEEEE--CCCCHHHHHHHHHHHH
Confidence 4578899999999999999998765432223 345554 4457777777766543
No 435
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.56 E-value=0.02 Score=47.94 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=27.9
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 170 LKNPDVNMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 170 L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
+...+..+|-+.|.+|+||||+|..+...+...
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 334567899999999999999999999998654
No 436
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.56 E-value=0.031 Score=51.19 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=28.3
Q ss_pred HHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 168 DALKNPDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 168 ~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
+.+...+..++.|.|.+|+|||||+..+.+....
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3344456889999999999999999999998754
No 437
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.55 E-value=0.0067 Score=52.15 Aligned_cols=22 Identities=23% Similarity=0.067 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 042806 177 MLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
++.|+|+.|.||||+++.+...
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999843
No 438
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.55 E-value=0.016 Score=51.91 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=23.4
Q ss_pred EEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 042806 180 IYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK 215 (390)
Q Consensus 180 I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 215 (390)
|.||+|+||||+++.+.+.....+ ..++-|+..+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEcch
Confidence 689999999999999999886542 3355555543
No 439
>PRK15453 phosphoribulokinase; Provisional
Probab=95.55 E-value=0.11 Score=47.40 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.+..+|+|.|.+|+||||+++.+.+..+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999999987664
No 440
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.55 E-value=0.042 Score=53.32 Aligned_cols=88 Identities=14% Similarity=0.245 Sum_probs=52.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCC-------CCCCCCchH---
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI-QDIRKIQGEIADKLGL-------TLHEESDSG--- 241 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~l~~~i~~~l~~-------~~~~~~~~~--- 241 (390)
.....++|.|..|+|||||++.+.+... .+..++..++.. ....+++.+....-.. ...+.+...
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 3456889999999999999998876543 455566666543 3444555554321110 011111111
Q ss_pred ---HHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 242 ---RARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 242 ---~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
....+.+++. .++.+||++||+.
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 1234556664 3556999999985
No 441
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.02 Score=53.67 Aligned_cols=26 Identities=38% Similarity=0.314 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
+-+.++||+|.|||-||+.|+.....
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 56789999999999999999999874
No 442
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.53 E-value=0.071 Score=47.24 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=34.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGE 225 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~ 225 (390)
...++.|.|++|+|||+++.+++...-.+ =..++|++... +..++...
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~--~~~~l~~~ 62 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEE--REERILGY 62 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC--CHHHHHHH
Confidence 45789999999999999999998764332 23467777655 45555444
No 443
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.53 E-value=0.011 Score=50.91 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.+++|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468899999999999999997654
No 444
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.52 E-value=0.028 Score=48.80 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=28.1
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 166 ILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 166 l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
.+..+..+.-++..|.|++|+||||+++.+.......
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 3344433455788899999999999999998877654
No 445
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.50 E-value=0.024 Score=44.91 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=27.5
Q ss_pred HHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 163 LNDILDALKN---PDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 163 ~~~l~~~L~~---~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
++.|...+.+ +++-|++.+|.+|+|||.+++.+++..
T Consensus 38 ~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 38 VNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3344444443 346688999999999999999998884
No 446
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.50 E-value=0.065 Score=51.11 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=31.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI 216 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 216 (390)
+++.|.|.+|.|||.||..++.............+++.+..
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecch
Confidence 47899999999999999999999822223555677777664
No 447
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.50 E-value=0.014 Score=50.71 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..+|.|.|.+|+||||+++.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998875
No 448
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.49 E-value=0.013 Score=48.50 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 042806 178 LGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
|.|+|++|+||||+++.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999988764
No 449
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=95.48 E-value=0.052 Score=53.25 Aligned_cols=90 Identities=21% Similarity=0.292 Sum_probs=57.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc---CCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCC-------CCCCch--
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETE---KLFDQVIFVEVSKI-QDIRKIQGEIADKLGLTL-------HEESDS-- 240 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~---~~f~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~-------~~~~~~-- 240 (390)
.-.-++|.|..|+|||+|+..+.+..... ..+ .++++.++.. ....+++..+...-.... .+.+..
T Consensus 142 ~GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R 220 (460)
T PRK04196 142 RGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIER 220 (460)
T ss_pred CCCEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHH
Confidence 34568899999999999999998876432 111 6777878654 356667766655422211 111111
Q ss_pred ----HHHHHHHHHHh--CCCeEEEEEeCCC
Q 042806 241 ----GRARSLRNRLK--KEKTILVILDNIW 264 (390)
Q Consensus 241 ----~~~~~l~~~l~--~~~~~LlVlDdv~ 264 (390)
.....+.++++ .++++||++||+.
T Consensus 221 ~~a~~~a~tiAEyfr~d~G~~VLli~DslT 250 (460)
T PRK04196 221 ILTPRMALTAAEYLAFEKGMHVLVILTDMT 250 (460)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEcChH
Confidence 12346777776 4677999999984
No 450
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.48 E-value=0.11 Score=47.34 Aligned_cols=89 Identities=16% Similarity=0.236 Sum_probs=47.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ-DIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKK 252 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (390)
+...++++|++|+||||++..+......+. ..+.+++..... ...+-+...+..++.+.........+....+.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 457899999999999999999987764321 235555554322 11111223333344332221222222333333432
Q ss_pred -CCeEEEEEeCCC
Q 042806 253 -EKTILVILDNIW 264 (390)
Q Consensus 253 -~~~~LlVlDdv~ 264 (390)
.+.=++++|..-
T Consensus 152 ~~~~D~ViIDt~G 164 (270)
T PRK06731 152 EARVDYILIDTAG 164 (270)
T ss_pred cCCCCEEEEECCC
Confidence 222478888774
No 451
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.48 E-value=0.022 Score=49.56 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=25.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.+..+|.|+|++|+|||||++.+......
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999887643
No 452
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.47 E-value=0.013 Score=45.29 Aligned_cols=22 Identities=41% Similarity=0.273 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVA 196 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~ 196 (390)
...++|.|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4678999999999999999986
No 453
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.47 E-value=0.026 Score=53.22 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=38.9
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...++|.+..+..|+-.+.++...-+.|.|+.|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 34678888888888777777666667899999999999999998765
No 454
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.46 E-value=0.012 Score=52.07 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
..-+++|+|++|+|||||.+.+.--
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999654
No 455
>PRK13695 putative NTPase; Provisional
Probab=95.46 E-value=0.022 Score=48.32 Aligned_cols=34 Identities=32% Similarity=0.350 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFV 211 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv 211 (390)
-++|.|++|+|||||++.+++..... .+...-|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 37899999999999999998876542 34433343
No 456
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.45 E-value=0.015 Score=48.11 Aligned_cols=47 Identities=30% Similarity=0.346 Sum_probs=34.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLT 233 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~ 233 (390)
.++++|+|.+|+||||+.+.+.... .. +..+ +..++.-+++...+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~--~~iv---------NyG~~Mle~A~k~glv 50 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VK--HKIV---------NYGDLMLEIAKKKGLV 50 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hh--ceee---------eHhHHHHHHHHHhCCc
Confidence 5789999999999999999888776 21 2111 3456777777777654
No 457
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.45 E-value=0.047 Score=53.20 Aligned_cols=87 Identities=18% Similarity=0.324 Sum_probs=51.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCC-------CCCCCch-----
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVS-KIQDIRKIQGEIADKLGLT-------LHEESDS----- 240 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~l~~~i~~~l~~~-------~~~~~~~----- 240 (390)
+...++|.|+.|+|||||++.+..... .+..+++.+. ......++...+...-+.. ..+.+..
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~----~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQ----CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 456889999999999999999976543 2333444444 3345555555554432221 1111111
Q ss_pred -HHHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 241 -GRARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 241 -~~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
.....+.+++. .++.+|+++||+.
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 12234555663 3566999999985
No 458
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.43 E-value=0.047 Score=47.15 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.+|+|.|+.|+||||+++.+.+....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999998765
No 459
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.43 E-value=0.026 Score=56.72 Aligned_cols=60 Identities=12% Similarity=0.062 Sum_probs=38.3
Q ss_pred ccccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 042806 154 EACESRMSTLNDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK 215 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 215 (390)
+.++|....+.++++.+.. ....-|.|+|+.|+||+++|+.+.+..... -...+.+++..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~--~~pfv~inca~ 265 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRG--KKPFLALNCAS 265 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEecccc
Confidence 3577777766666665532 223347799999999999999986654211 12234555544
No 460
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.43 E-value=0.038 Score=53.14 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=36.5
Q ss_pred ccccchhHHHHHHHHHhcC--------------CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 154 EACESRMSTLNDILDALKN--------------PDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
..++|.+..+..+..++.. ..++-|.++|++|+|||+||+.+......
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3577887777777666632 01467899999999999999999988753
No 461
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.38 E-value=0.066 Score=52.19 Aligned_cols=87 Identities=17% Similarity=0.319 Sum_probs=50.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCC-------CCCCch-H---
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI-QDIRKIQGEIADKLGLTL-------HEESDS-G--- 241 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~-------~~~~~~-~--- 241 (390)
....++|+|..|+|||||++.+..... .+..++..+... ....++...+...-+... .+.+.. .
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 446789999999999999998876432 344444444433 244555555544332211 111111 1
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 242 --RARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 242 --~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
....+.+++. .++++||++||+.
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecchh
Confidence 1234556663 3566999999985
No 462
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.37 E-value=0.016 Score=49.13 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...|+|+|+.|+||||+++.+.....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34689999999999999999998764
No 463
>PRK06851 hypothetical protein; Provisional
Probab=95.37 E-value=0.028 Score=53.37 Aligned_cols=44 Identities=25% Similarity=0.188 Sum_probs=34.8
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 042806 172 NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI 216 (390)
Q Consensus 172 ~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 216 (390)
.+-.+.+.|.|++|+|||||++.++.....+ .++..++-|.+.+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence 3446789999999999999999999998654 4777776665554
No 464
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.36 E-value=0.014 Score=49.05 Aligned_cols=21 Identities=33% Similarity=0.295 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 042806 178 LGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~ 198 (390)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999877
No 465
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.36 E-value=0.033 Score=51.84 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
+++.+.|-||+||||+|....-....+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~ 28 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR 28 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC
Confidence 689999999999999998887776543
No 466
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.36 E-value=0.023 Score=53.12 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=41.9
Q ss_pred ccccchhHHHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 154 EACESRMSTLNDILDALKN------PDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
..|+|-++.++++++.+.. ..-+++.++||.|.|||||+..+.+..+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 4689999999999998863 45789999999999999999999888754
No 467
>PLN02200 adenylate kinase family protein
Probab=95.35 E-value=0.016 Score=51.74 Aligned_cols=27 Identities=15% Similarity=0.048 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.+.+|.|.|++|+||||+++.+.....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999987653
No 468
>PRK06851 hypothetical protein; Provisional
Probab=95.35 E-value=0.031 Score=53.02 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=33.2
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 042806 172 NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI 216 (390)
Q Consensus 172 ~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 216 (390)
.+..+++.|.|.+|+|||||++.+.+..... .|+...+.+.+.+
T Consensus 27 ~~~~~~~il~G~pGtGKStl~~~i~~~~~~~-g~~Ve~~~~~~d~ 70 (367)
T PRK06851 27 DGANRIFILKGGPGTGKSTLMKKIGEEFLEK-GYDVEFLHCSSDN 70 (367)
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEcCCCC
Confidence 3456889999999999999999999988653 3665555544443
No 469
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.35 E-value=0.024 Score=53.27 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=36.8
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...++|.+..+..+.-.+.+....-+.+.|++|+||||+|+.+..-.
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 45678998888877765544444457899999999999999997775
No 470
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.34 E-value=0.036 Score=47.86 Aligned_cols=27 Identities=33% Similarity=0.314 Sum_probs=24.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
..+|+|-||=|+||||||+.+.++.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC
Confidence 468999999999999999999999864
No 471
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.2 Score=51.25 Aligned_cols=168 Identities=15% Similarity=0.120 Sum_probs=86.5
Q ss_pred cccchhHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC--eEEEEEeCCCCCHHHHH
Q 042806 155 ACESRMSTLNDILDALKNP---------DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFD--QVIFVEVSKIQDIRKIQ 223 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~--~~~wv~v~~~~~~~~l~ 223 (390)
...+++..+..+.+.+... -..++.++|++|+||||+++.++...... -|. |.-.++-+...+
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h-~~evdc~el~~~s~~~~----- 475 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLH-LLEVDCYELVAESASHT----- 475 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCc-eEeccHHHHhhcccchh-----
Confidence 3455666666677766542 24678899999999999999999987532 121 111111111111
Q ss_pred HHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC-------cc------ccccc--CCCCCCCCCcEEEEE
Q 042806 224 GEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN-------LD------FQAVG--IPHGDDRKGCKVLLT 288 (390)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~-------~~------~~~l~--~~l~~~~~~s~IivT 288 (390)
.. ......+..+.-.+.+|.|-+++-. .+ .+.+. .-++...++.-++.|
T Consensus 476 ---------------et-kl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t 539 (953)
T KOG0736|consen 476 ---------------ET-KLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVAT 539 (953)
T ss_pred ---------------HH-HHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEe
Confidence 11 1112222222223456665555311 11 11111 112223445555666
Q ss_pred ecc-hhhhhh-cCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCC
Q 042806 289 ARS-LDVLSR-KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGL 346 (390)
Q Consensus 289 tr~-~~v~~~-~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 346 (390)
+.+ +.+... .....+.+++..+++++=.++|+-......... +.-.+..+.+|.|.
T Consensus 540 ~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~--~v~~k~~a~~t~gf 597 (953)
T KOG0736|consen 540 TSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQ--DVNLKQLARKTSGF 597 (953)
T ss_pred ccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccch--HHHHHHHHHhcCCC
Confidence 554 333221 112346888999999999999987775322221 12234566666654
No 472
>COG3910 Predicted ATPase [General function prediction only]
Probab=95.33 E-value=0.12 Score=43.94 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
+.++-.|+|..|+||+||.-.+.-..
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhhc
Confidence 56889999999999999999887654
No 473
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=95.32 E-value=0.062 Score=50.21 Aligned_cols=90 Identities=17% Similarity=0.278 Sum_probs=58.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCC----------CCCCc---h
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI-QDIRKIQGEIADKLGLTL----------HEESD---S 240 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~----------~~~~~---~ 240 (390)
-.-|++.|-+|+|||.|.+.+.+.... .|=...+|.-++.. ..-.+++.++...--.+. +.... .
T Consensus 147 GgKiGLFGGAGVGKTVl~~ELI~Nia~-~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RVa 225 (468)
T COG0055 147 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVA 225 (468)
T ss_pred CceeeeeccCCccceeeHHHHHHHHHH-HcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeeh
Confidence 456889999999999999999998764 34456788877654 356778888765532211 11111 1
Q ss_pred HHHHHHHHHHhC--CCeEEEEEeCCCC
Q 042806 241 GRARSLRNRLKK--EKTILVILDNIWG 265 (390)
Q Consensus 241 ~~~~~l~~~l~~--~~~~LlVlDdv~~ 265 (390)
-.-....+++++ ++.+|+.+||+..
T Consensus 226 ltGlT~AEyfRD~~gqdVLlFIDNIfR 252 (468)
T COG0055 226 LTGLTMAEYFRDEEGQDVLLFIDNIFR 252 (468)
T ss_pred hhhhhHHHHhhcccCCeEEEEehhhhH
Confidence 112244555653 5669999999963
No 474
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.31 E-value=0.015 Score=51.29 Aligned_cols=26 Identities=38% Similarity=0.403 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..-+++|+|++|+|||||++.+.--.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45689999999999999999997544
No 475
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.29 E-value=0.051 Score=51.02 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=29.6
Q ss_pred HHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 165 DILDALK--NPDVNMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 165 ~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
.+++.+. .++..+|.|.|++|+|||||+..+.......
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4444443 3567899999999999999999998887653
No 476
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.27 E-value=0.018 Score=52.92 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
+.|+|+|-||+||||++..+......+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~ 27 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM 27 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 468999999999999999999887654
No 477
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.25 E-value=0.025 Score=44.87 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
...+|.+.|.=|+||||+++.++......
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 45789999999999999999999988654
No 478
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.23 E-value=0.02 Score=47.75 Aligned_cols=29 Identities=34% Similarity=0.489 Sum_probs=26.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEK 203 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~ 203 (390)
.+++.|+|..|+|||||+..+....+.++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 47899999999999999999999988753
No 479
>PRK13974 thymidylate kinase; Provisional
Probab=95.23 E-value=0.16 Score=44.63 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=24.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcC
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEK 203 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~ 203 (390)
.+|++.|+.|+||||+++.++......+
T Consensus 4 ~~i~~eG~dGsGKsT~~~~l~~~l~~~g 31 (212)
T PRK13974 4 KFIVLEGIDGCGKTTQIDHLSKWLPSSG 31 (212)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999886543
No 480
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.22 E-value=0.016 Score=50.96 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
.--+++|+|++|+|||||...+.--
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999988654
No 481
>PLN02674 adenylate kinase
Probab=95.20 E-value=0.1 Score=46.71 Aligned_cols=26 Identities=19% Similarity=0.017 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...|.|.|++|+||||+++.+.....
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Confidence 35578999999999999999988753
No 482
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.19 E-value=0.079 Score=51.74 Aligned_cols=89 Identities=15% Similarity=0.201 Sum_probs=48.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh------CC-CCCCCCch-----
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL------GL-TLHEESDS----- 240 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l------~~-~~~~~~~~----- 240 (390)
.....++|+|..|+|||||++.+...... -.+.+++.-.......++.......- .. ...+.+..
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~ 232 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNTSA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKG 232 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHH
Confidence 45678999999999999999988775432 12333332223334555444322211 10 11111111
Q ss_pred -HHHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 241 -GRARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 241 -~~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
.....+.+++. .++.+||++||+.
T Consensus 233 ~~~a~~iAEyfr~~g~~Vll~~Dslt 258 (438)
T PRK07721 233 AYTATAIAEYFRDQGLNVMLMMDSVT 258 (438)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeChH
Confidence 12234555663 3566999999984
No 483
>PRK06761 hypothetical protein; Provisional
Probab=95.17 E-value=0.038 Score=50.57 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=26.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEE
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVI 209 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~ 209 (390)
++|.|.|++|+||||+++.+.+..... .++...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~-g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN-GIEVEL 36 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC-ceEEEE
Confidence 579999999999999999999987642 344433
No 484
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=95.17 E-value=0.07 Score=51.85 Aligned_cols=85 Identities=20% Similarity=0.222 Sum_probs=49.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC-HHHHHHHHHHHhCCC---------CCCCCch--
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQD-IRKIQGEIADKLGLT---------LHEESDS-- 240 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~l~~~i~~~l~~~---------~~~~~~~-- 240 (390)
.+...++|.|..|+|||||++.+..... .+..++..++.... ..++... .++.. ..+.+..
T Consensus 155 ~~Gq~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGergrev~e~~~~---~l~~~l~~tvvV~atsddsp~~R 227 (434)
T PRK08472 155 GKGQKLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERGREIPEFIEK---NLGGDLENTVIVVATSDDSPLMR 227 (434)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccchhHHHHHHH---HhcCcccceEEEEECCCCCHHHh
Confidence 3456889999999999999999986542 34445555544432 2333332 22221 0011111
Q ss_pred ----HHHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 241 ----GRARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 241 ----~~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
.....+.+++. .++.+|+++||+.
T Consensus 228 ~~~~~~a~~iAEyFrd~G~~Vll~~DslT 256 (434)
T PRK08472 228 KYGAFCAMSVAEYFKNQGLDVLFIMDSVT 256 (434)
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEecccch
Confidence 12334556663 3566999999985
No 485
>PRK08760 replicative DNA helicase; Provisional
Probab=95.17 E-value=0.88 Score=45.23 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=36.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL 230 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l 230 (390)
...++.|-|.+|+|||+++..++.....+.... ++++ |-.-+..++...+....
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~~-V~~f--SlEMs~~ql~~Rl~a~~ 281 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKKG-VAVF--SMEMSASQLAMRLISSN 281 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhcCCc-eEEE--eccCCHHHHHHHHHHhh
Confidence 346788999999999999999988764332333 3333 44456667777665543
No 486
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.15 E-value=0.089 Score=51.09 Aligned_cols=89 Identities=19% Similarity=0.292 Sum_probs=52.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCC-------CCCCchH----
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVS-KIQDIRKIQGEIADKLGLTL-------HEESDSG---- 241 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~l~~~i~~~l~~~~-------~~~~~~~---- 241 (390)
....++|+|..|+|||||++.++..... +......+. ......+++...+..-+... .+.+...
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA----DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC----CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 4568899999999999999998876532 222222333 33566677666555533221 1111111
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCCCC
Q 042806 242 --RARSLRNRLK-KEKTILVILDNIWGN 266 (390)
Q Consensus 242 --~~~~l~~~l~-~~~~~LlVlDdv~~~ 266 (390)
....+.+++. .+++.||++||+...
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 1224445553 356699999999644
No 487
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.15 E-value=0.065 Score=52.06 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
+...++|.|+.|+|||||++.+....
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhccc
Confidence 45789999999999999999887644
No 488
>PLN02459 probable adenylate kinase
Probab=95.15 E-value=0.12 Score=46.60 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.|.|.|++|+||||++..+.....
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~ 54 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLG 54 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 477789999999999999988653
No 489
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.14 E-value=0.018 Score=49.71 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 042806 178 LGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (390)
|.|.|++|+||||+++.+....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998874
No 490
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.13 E-value=0.049 Score=50.65 Aligned_cols=54 Identities=22% Similarity=0.164 Sum_probs=41.3
Q ss_pred cccccchhHHHH---HHHHHhcCCC--ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC
Q 042806 153 YEACESRMSTLN---DILDALKNPD--VNMLGIYGMGGIVKTTLAKEVARKAETEKLFD 206 (390)
Q Consensus 153 ~~~~~gR~~~~~---~l~~~L~~~~--~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~ 206 (390)
.++++|..+..+ -+++++.+++ .+.|.+.|++|.|||.||..+.+.+...-+|.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 467888665443 4566666653 57899999999999999999999998665563
No 491
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.12 E-value=0.026 Score=49.81 Aligned_cols=22 Identities=32% Similarity=0.243 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVAR 197 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~ 197 (390)
++++|.|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999864
No 492
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.12 E-value=0.017 Score=46.81 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..+++|+|+.|+|||||.+.++....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 45789999999999999998876653
No 493
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.10 E-value=0.07 Score=53.53 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=64.4
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCCCCCC-----
Q 042806 164 NDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQD--IRKIQGEIADKLGLTLHE----- 236 (390)
Q Consensus 164 ~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~--~~~l~~~i~~~l~~~~~~----- 236 (390)
.+|++.+.+ ..||.|+|..|+||||-..++..... |...--|.+.++.- .-.+.+.+...++.....
T Consensus 362 ~~ll~~ir~--n~vvvivgETGSGKTTQl~QyL~edG----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYs 435 (1042)
T KOG0924|consen 362 DQLLSVIRE--NQVVVIVGETGSGKTTQLAQYLYEDG----YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYS 435 (1042)
T ss_pred HHHHHHHhh--CcEEEEEecCCCCchhhhHHHHHhcc----cccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceE
Confidence 344444443 46899999999999976555544432 43223455555543 344566777777442111
Q ss_pred -----C-Cc------hHHHHHHHHHHh----CCCeEEEEEeCCCCCcc----c-ccccCCCCCCCCCcEEEEEecc
Q 042806 237 -----E-SD------SGRARSLRNRLK----KEKTILVILDNIWGNLD----F-QAVGIPHGDDRKGCKVLLTARS 291 (390)
Q Consensus 237 -----~-~~------~~~~~~l~~~l~----~~~~~LlVlDdv~~~~~----~-~~l~~~l~~~~~~s~IivTtr~ 291 (390)
. +. ...-..|++.|. .+. -+||+|..+.... + .-++..+ ......++||||-.
T Consensus 436 IRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kY-SviImDEAHERslNtDilfGllk~~l-arRrdlKliVtSAT 509 (1042)
T KOG0924|consen 436 IRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKY-SVIIMDEAHERSLNTDILFGLLKKVL-ARRRDLKLIVTSAT 509 (1042)
T ss_pred EEeeecCCCceeEEEeccchHHHHHhhhhhhhhe-eEEEechhhhcccchHHHHHHHHHHH-HhhccceEEEeecc
Confidence 0 11 111123444443 333 6899999975522 1 1111111 23346799999875
No 494
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.09 E-value=0.088 Score=51.01 Aligned_cols=87 Identities=20% Similarity=0.328 Sum_probs=49.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCC-------CCCCCch-----
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI-QDIRKIQGEIADKLGLT-------LHEESDS----- 240 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~l~~~i~~~l~~~-------~~~~~~~----- 240 (390)
....++|+|..|+|||||++.+..... .+..+...++.. ....++....+..-+.. ..+.+..
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~----~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~ 211 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAK----ADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKA 211 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 456899999999999999998876543 233333334432 24445554443322111 1111111
Q ss_pred -HHHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 241 -GRARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 241 -~~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
.....+.+++. .++.+||++||+.
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (413)
T TIGR03497 212 AFTATAIAEYFRDQGKDVLLMMDSVT 237 (413)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCcH
Confidence 12234555553 3566999999984
No 495
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.07 E-value=0.1 Score=45.54 Aligned_cols=25 Identities=24% Similarity=0.072 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
..+++.|.|+.|.||||+.+.+..-
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999988654
No 496
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.07 E-value=0.021 Score=48.07 Aligned_cols=24 Identities=42% Similarity=0.419 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+|.|.|+.|+||||+|+.+.+...
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999988653
No 497
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.06 E-value=0.023 Score=48.79 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.+.|.|+|++|+||+||+..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4678999999999999999998875
No 498
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.06 E-value=0.025 Score=53.83 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=45.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKE 253 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (390)
.++=+-|||+.|.|||-|+-.+|+....+..- .....+.+..+-+.+..... ....+..+.+.+.++
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~----------R~HFh~Fm~~vh~~l~~~~~---~~~~l~~va~~l~~~ 127 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKR----------RVHFHEFMLDVHSRLHQLRG---QDDPLPQVADELAKE 127 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccc----------cccccHHHHHHHHHHHHHhC---CCccHHHHHHHHHhc
Confidence 45678899999999999999999997653110 01112444444333322111 111233444555444
Q ss_pred CeEEEEEeCCC
Q 042806 254 KTILVILDNIW 264 (390)
Q Consensus 254 ~~~LlVlDdv~ 264 (390)
. .||.||.+.
T Consensus 128 ~-~lLcfDEF~ 137 (362)
T PF03969_consen 128 S-RLLCFDEFQ 137 (362)
T ss_pred C-CEEEEeeee
Confidence 4 699999985
No 499
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=95.06 E-value=0.15 Score=49.62 Aligned_cols=88 Identities=18% Similarity=0.297 Sum_probs=51.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCC-------CCCCCch----
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK-IQDIRKIQGEIADKLGLT-------LHEESDS---- 240 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~l~~~i~~~l~~~-------~~~~~~~---- 240 (390)
.+...++|.|+.|+|||||++.+..... .+...+..+.. .....++..+........ ....+..
T Consensus 143 ~~Gq~~~I~G~sG~GKStLl~~I~~~~~----~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~ 218 (422)
T TIGR02546 143 GEGQRIGIFAGAGVGKSTLLGMIARGAS----ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLK 218 (422)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHH
Confidence 3456789999999999999998887543 34444445543 334555554443332111 1111111
Q ss_pred --HHHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 241 --GRARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 241 --~~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
.....+.+++. .+++.|+++|++.
T Consensus 219 ~~~~a~~~AE~f~~~g~~Vl~~~Dslt 245 (422)
T TIGR02546 219 AAYTATAIAEYFRDQGKRVLLMMDSLT 245 (422)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCch
Confidence 12223445553 3566999999995
No 500
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.05 E-value=0.074 Score=45.55 Aligned_cols=117 Identities=21% Similarity=0.112 Sum_probs=63.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC---CCCHHHHHHHHH--HH--hCCC--CCCCCchH---
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK---IQDIRKIQGEIA--DK--LGLT--LHEESDSG--- 241 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~---~~~~~~l~~~i~--~~--l~~~--~~~~~~~~--- 241 (390)
....|.|+|..|-||||.|.-+.-+.-..+ +. +..+.+-. ......++..+- .. .+.. ....+...
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G-~~-V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHG-KK-VGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCC-Ce-EEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 346788999999999999999888765432 33 22333321 234444443320 00 0111 11111111
Q ss_pred ----HHHHHHHHHhCCCeEEEEEeCCCCC-----cccccccCCCCCCCCCcEEEEEecch
Q 042806 242 ----RARSLRNRLKKEKTILVILDNIWGN-----LDFQAVGIPHGDDRKGCKVLLTARSL 292 (390)
Q Consensus 242 ----~~~~l~~~l~~~~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~s~IivTtr~~ 292 (390)
......+.+.+++-=|||||.+-.. -..+++...+....++..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1223444555555349999998432 23344444444445667899999974
Done!