Query 042806
Match_columns 390
No_of_seqs 213 out of 2352
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 16:56:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.7E-33 1.3E-37 279.6 21.1 198 157-360 131-343 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 8.2E-28 2.8E-32 262.5 17.7 216 150-379 120-348 (1249)
3 1vt4_I APAF-1 related killer D 99.9 3.3E-27 1.1E-31 242.7 11.3 197 156-370 130-348 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 3.4E-26 1.2E-30 231.5 17.8 210 152-378 122-347 (591)
5 2qen_A Walker-type ATPase; unk 99.7 3.3E-16 1.1E-20 147.4 15.1 196 151-357 9-249 (350)
6 2fna_A Conserved hypothetical 99.6 1.7E-15 5.8E-20 142.9 15.0 194 152-358 11-254 (357)
7 1w5s_A Origin recognition comp 99.6 2.6E-14 8.7E-19 137.7 16.7 199 154-354 22-266 (412)
8 1njg_A DNA polymerase III subu 99.5 3.8E-13 1.3E-17 119.3 14.5 199 152-358 21-232 (250)
9 2qby_A CDC6 homolog 1, cell di 99.5 4.1E-13 1.4E-17 127.8 14.2 200 154-353 20-244 (386)
10 2chg_A Replication factor C sm 99.5 9.3E-13 3.2E-17 115.2 15.3 188 153-356 16-206 (226)
11 2qby_B CDC6 homolog 3, cell di 99.4 1.2E-12 4E-17 124.9 14.8 195 154-353 20-245 (384)
12 2v1u_A Cell division control p 99.4 5E-12 1.7E-16 120.4 15.5 193 154-349 19-244 (387)
13 3qfl_A MLA10; coiled-coil, (CC 99.4 5.1E-13 1.7E-17 104.3 6.9 78 9-95 3-81 (115)
14 1fnn_A CDC6P, cell division co 99.4 1.8E-11 6.2E-16 116.7 17.4 199 154-353 17-246 (389)
15 1sxj_B Activator 1 37 kDa subu 99.3 2.1E-11 7E-16 113.2 12.3 190 152-356 19-212 (323)
16 1iqp_A RFCS; clamp loader, ext 99.1 9.3E-11 3.2E-15 109.0 9.6 190 153-358 24-216 (327)
17 3te6_A Regulatory protein SIR3 99.1 2.1E-09 7.3E-14 98.8 17.0 172 153-324 19-212 (318)
18 2chq_A Replication factor C sm 99.1 1.2E-09 4E-14 101.1 13.9 187 152-357 15-207 (319)
19 1jr3_A DNA polymerase III subu 99.0 3.4E-09 1.2E-13 100.3 13.1 195 153-355 15-222 (373)
20 1hqc_A RUVB; extended AAA-ATPa 99.0 3.4E-09 1.1E-13 98.4 12.5 176 153-358 11-215 (324)
21 1jbk_A CLPB protein; beta barr 98.9 2.3E-09 7.7E-14 91.1 8.4 152 153-319 21-194 (195)
22 1sxj_D Activator 1 41 kDa subu 98.9 1.3E-08 4.3E-13 95.6 12.0 195 153-354 36-235 (353)
23 3h4m_A Proteasome-activating n 98.8 2.8E-08 9.5E-13 90.5 12.2 180 152-353 15-230 (285)
24 3bos_A Putative DNA replicatio 98.8 5.4E-09 1.9E-13 92.4 6.5 173 154-354 28-217 (242)
25 1sxj_A Activator 1 95 kDa subu 98.8 3.2E-08 1.1E-12 97.9 12.5 191 151-355 36-254 (516)
26 2qz4_A Paraplegin; AAA+, SPG7, 98.8 2.7E-07 9.2E-12 82.7 16.3 181 154-354 6-222 (262)
27 3pvs_A Replication-associated 98.8 1.1E-07 3.7E-12 92.1 14.5 179 151-355 23-216 (447)
28 1d2n_A N-ethylmaleimide-sensit 98.7 2E-07 6.8E-12 84.2 14.8 180 172-380 61-265 (272)
29 3d8b_A Fidgetin-like protein 1 98.7 4.3E-07 1.5E-11 85.4 16.6 182 153-355 83-296 (357)
30 3u61_B DNA polymerase accessor 98.7 9.2E-08 3.1E-12 88.8 11.6 182 151-354 23-216 (324)
31 1xwi_A SKD1 protein; VPS4B, AA 98.7 1.4E-06 4.8E-11 80.7 19.5 182 153-354 11-223 (322)
32 1sxj_E Activator 1 40 kDa subu 98.7 1E-07 3.4E-12 89.6 11.8 198 152-355 12-238 (354)
33 3pfi_A Holliday junction ATP-d 98.7 1.8E-07 6.1E-12 87.3 12.8 173 152-354 27-227 (338)
34 3syl_A Protein CBBX; photosynt 98.6 4.4E-08 1.5E-12 90.2 7.7 154 155-324 32-218 (309)
35 3eie_A Vacuolar protein sortin 98.6 7.4E-07 2.5E-11 82.6 15.6 183 151-354 15-228 (322)
36 3vfd_A Spastin; ATPase, microt 98.6 1.6E-06 5.6E-11 82.5 18.3 182 152-354 113-326 (389)
37 3uk6_A RUVB-like 2; hexameric 98.6 5.4E-07 1.9E-11 85.0 14.6 196 153-353 43-302 (368)
38 1sxj_C Activator 1 40 kDa subu 98.6 4E-07 1.4E-11 85.1 12.9 185 153-354 24-212 (340)
39 2z4s_A Chromosomal replication 98.6 5.3E-07 1.8E-11 87.2 13.7 171 164-353 118-305 (440)
40 2zan_A Vacuolar protein sortin 98.6 2.8E-06 9.6E-11 82.2 18.8 181 153-353 133-344 (444)
41 1a5t_A Delta prime, HOLB; zinc 98.6 1.2E-06 4.1E-11 81.6 15.3 171 159-353 7-204 (334)
42 3b9p_A CG5977-PA, isoform A; A 98.6 3.5E-06 1.2E-10 76.9 18.0 182 152-354 19-233 (297)
43 3pxg_A Negative regulator of g 98.5 4.9E-07 1.7E-11 88.2 12.1 150 153-324 179-339 (468)
44 2qp9_X Vacuolar protein sortin 98.5 4.2E-06 1.4E-10 78.6 17.5 180 153-353 50-260 (355)
45 3cf0_A Transitional endoplasmi 98.5 4.1E-06 1.4E-10 76.8 15.7 173 153-349 14-223 (301)
46 1l8q_A Chromosomal replication 98.4 2.3E-06 8E-11 79.2 13.2 166 163-349 23-203 (324)
47 1qvr_A CLPB protein; coiled co 98.4 8.1E-07 2.8E-11 93.2 11.0 157 152-323 168-345 (854)
48 4b4t_J 26S protease regulatory 98.4 5.5E-06 1.9E-10 78.1 15.4 175 152-348 146-355 (405)
49 2p65_A Hypothetical protein PF 98.4 5E-07 1.7E-11 76.1 7.5 49 153-201 21-69 (187)
50 4b4t_H 26S protease regulatory 98.3 1E-05 3.5E-10 77.4 15.1 173 153-347 208-415 (467)
51 3ec2_A DNA replication protein 98.3 7.1E-07 2.4E-11 75.2 6.1 116 159-291 19-142 (180)
52 4b4t_I 26S protease regulatory 98.3 1.5E-05 5.3E-10 75.5 15.7 174 152-347 180-388 (437)
53 1r6b_X CLPA protein; AAA+, N-t 98.3 9E-06 3.1E-10 84.2 15.2 156 153-323 185-362 (758)
54 4b4t_M 26S protease regulatory 98.3 4E-06 1.4E-10 80.2 11.3 171 153-347 180-387 (434)
55 3pxi_A Negative regulator of g 98.3 3.8E-06 1.3E-10 87.0 11.9 152 153-324 179-339 (758)
56 4b4t_L 26S protease subunit RP 98.2 1.6E-05 5.4E-10 76.1 14.3 172 153-348 180-388 (437)
57 2gno_A DNA polymerase III, gam 98.2 5.9E-06 2E-10 75.8 10.1 144 160-323 3-152 (305)
58 1lv7_A FTSH; alpha/beta domain 98.2 0.00011 3.7E-09 65.5 17.6 179 153-353 11-224 (257)
59 2r62_A Cell division protease 98.2 6.3E-07 2.2E-11 80.7 2.8 171 154-348 11-219 (268)
60 3n70_A Transport activator; si 98.2 6.2E-07 2.1E-11 72.9 2.2 46 155-200 2-49 (145)
61 4b4t_K 26S protease regulatory 98.1 3.1E-05 1.1E-09 73.9 13.5 172 152-347 170-379 (428)
62 4fcw_A Chaperone protein CLPB; 98.1 3.9E-06 1.3E-10 77.0 6.9 105 155-266 18-131 (311)
63 1ofh_A ATP-dependent HSL prote 98.1 1.7E-05 5.7E-10 72.6 10.4 46 155-200 16-75 (310)
64 2ce7_A Cell division protein F 98.0 3.1E-05 1.1E-09 75.1 12.0 173 153-347 15-221 (476)
65 3hu3_A Transitional endoplasmi 98.0 0.0001 3.5E-09 72.0 15.1 179 153-353 203-414 (489)
66 2c9o_A RUVB-like 1; hexameric 97.9 8.9E-05 3.1E-09 71.9 12.8 48 153-200 36-88 (456)
67 1in4_A RUVB, holliday junction 97.9 0.00018 6.1E-09 66.8 13.9 173 153-354 24-223 (334)
68 2w58_A DNAI, primosome compone 97.8 3.9E-05 1.3E-09 65.6 7.9 113 161-291 36-158 (202)
69 3co5_A Putative two-component 97.8 2.2E-06 7.4E-11 69.4 -0.2 45 155-199 5-51 (143)
70 2bjv_A PSP operon transcriptio 97.8 1.5E-05 5.2E-10 71.4 4.9 60 154-215 6-67 (265)
71 1ojl_A Transcriptional regulat 97.8 4.6E-05 1.6E-09 69.8 7.7 46 155-200 3-50 (304)
72 3cf2_A TER ATPase, transitiona 97.8 6.4E-05 2.2E-09 77.2 9.4 173 153-349 203-409 (806)
73 3m6a_A ATP-dependent protease 97.7 0.00011 3.8E-09 72.8 10.1 138 174-323 107-266 (543)
74 3pxi_A Negative regulator of g 97.7 2.4E-05 8E-10 81.0 4.8 149 154-323 491-675 (758)
75 1r6b_X CLPA protein; AAA+, N-t 97.6 9.6E-05 3.3E-09 76.5 7.3 159 155-323 459-666 (758)
76 1ixz_A ATP-dependent metallopr 97.5 0.0012 3.9E-08 58.6 12.3 149 177-347 51-221 (254)
77 3io5_A Recombination and repai 97.4 0.001 3.5E-08 60.5 11.4 85 177-266 30-123 (333)
78 3t15_A Ribulose bisphosphate c 97.4 0.00014 4.9E-09 66.1 5.7 27 174-200 35-61 (293)
79 2dhr_A FTSH; AAA+ protein, hex 97.4 0.0012 4.2E-08 64.3 12.5 170 153-347 30-236 (499)
80 3hr8_A Protein RECA; alpha and 97.4 0.00068 2.3E-08 63.1 10.0 86 174-266 60-151 (356)
81 1n0w_A DNA repair protein RAD5 97.4 0.0012 4.1E-08 57.8 11.1 92 174-266 23-131 (243)
82 1qvr_A CLPB protein; coiled co 97.3 0.00014 4.9E-09 76.2 5.3 46 155-200 559-613 (854)
83 2x8a_A Nuclear valosin-contain 97.3 0.0022 7.4E-08 57.6 12.4 126 177-324 46-192 (274)
84 1jr3_D DNA polymerase III, del 97.3 0.0031 1.1E-07 58.5 13.7 165 168-354 11-185 (343)
85 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.0004 1.4E-08 63.3 7.3 70 175-266 123-194 (331)
86 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.00035 1.2E-08 60.7 6.7 49 174-226 22-70 (235)
87 1iy2_A ATP-dependent metallopr 97.3 0.0013 4.3E-08 59.2 10.2 149 177-347 75-245 (278)
88 1v5w_A DMC1, meiotic recombina 97.3 0.0014 4.7E-08 61.0 10.6 91 174-265 121-230 (343)
89 2kjq_A DNAA-related protein; s 97.3 0.00059 2E-08 55.3 7.1 47 167-215 28-74 (149)
90 2cvh_A DNA repair and recombin 97.3 0.0021 7.1E-08 55.2 11.1 86 174-266 19-117 (220)
91 1ypw_A Transitional endoplasmi 97.3 0.00087 3E-08 69.6 10.0 151 153-324 203-386 (806)
92 2qgz_A Helicase loader, putati 97.2 0.00048 1.6E-08 63.1 6.6 53 159-213 133-189 (308)
93 2zr9_A Protein RECA, recombina 97.2 0.0015 5.1E-08 60.8 9.8 85 174-265 60-150 (349)
94 2i1q_A DNA repair and recombin 97.2 0.0013 4.3E-08 60.6 9.2 90 174-264 97-214 (322)
95 2z43_A DNA repair and recombin 97.2 0.0011 3.8E-08 61.1 8.8 91 174-265 106-214 (324)
96 1xp8_A RECA protein, recombina 97.1 0.0022 7.5E-08 60.0 10.3 85 174-265 73-163 (366)
97 2px0_A Flagellar biosynthesis 97.1 0.0034 1.2E-07 57.0 10.8 58 174-232 104-162 (296)
98 3lda_A DNA repair protein RAD5 97.0 0.0019 6.4E-08 61.2 8.8 91 174-265 177-284 (400)
99 1u94_A RECA protein, recombina 97.0 0.0026 8.9E-08 59.3 9.3 85 174-265 62-152 (356)
100 4a74_A DNA repair and recombin 96.8 0.0054 1.9E-07 53.0 9.4 91 174-265 24-136 (231)
101 3cf2_A TER ATPase, transitiona 96.7 0.0016 5.5E-08 66.9 6.2 172 153-346 476-682 (806)
102 1rz3_A Hypothetical protein rb 96.7 0.0017 5.9E-08 55.3 5.3 43 159-201 3-48 (201)
103 1sky_E F1-ATPase, F1-ATP synth 96.7 0.0061 2.1E-07 58.5 9.4 88 176-264 152-255 (473)
104 3bh0_A DNAB-like replicative h 96.7 0.013 4.4E-07 53.7 11.3 52 174-229 67-118 (315)
105 2r44_A Uncharacterized protein 96.6 0.0028 9.6E-08 58.4 6.4 150 155-324 28-199 (331)
106 3c8u_A Fructokinase; YP_612366 96.6 0.0025 8.4E-08 54.6 5.6 41 161-201 6-48 (208)
107 1pzn_A RAD51, DNA repair and r 96.6 0.0051 1.7E-07 57.2 7.9 92 174-266 130-243 (349)
108 3ice_A Transcription terminati 96.5 0.0038 1.3E-07 58.3 6.7 99 165-264 163-271 (422)
109 1fx0_B ATP synthase beta chain 96.5 0.009 3.1E-07 57.5 9.3 98 166-264 155-276 (498)
110 1g8p_A Magnesium-chelatase 38 96.5 0.0015 5.2E-08 60.5 3.7 48 153-200 23-70 (350)
111 3dm5_A SRP54, signal recogniti 96.5 0.019 6.5E-07 54.8 11.3 28 174-201 99-126 (443)
112 2ehv_A Hypothetical protein PH 96.5 0.0063 2.2E-07 53.3 7.6 25 174-198 29-53 (251)
113 1qhx_A CPT, protein (chloramph 96.5 0.0017 5.8E-08 53.9 3.6 25 176-200 4-28 (178)
114 2ck3_D ATP synthase subunit be 96.5 0.024 8.1E-07 54.4 11.8 99 165-264 142-263 (482)
115 2dr3_A UPF0273 protein PH0284; 96.4 0.013 4.4E-07 51.1 9.4 49 174-226 22-70 (247)
116 3sr0_A Adenylate kinase; phosp 96.4 0.0082 2.8E-07 51.3 7.7 75 177-266 2-86 (206)
117 3kb2_A SPBC2 prophage-derived 96.4 0.0019 6.7E-08 53.1 3.6 25 176-200 2-26 (173)
118 3lw7_A Adenylate kinase relate 96.4 0.0019 6.6E-08 53.1 3.5 20 176-195 2-21 (179)
119 2b8t_A Thymidine kinase; deoxy 96.4 0.0015 5.1E-08 56.6 2.6 110 174-291 11-125 (223)
120 3kl4_A SRP54, signal recogniti 96.4 0.016 5.6E-07 55.2 10.0 29 174-202 96-124 (433)
121 3cmu_A Protein RECA, recombina 96.3 0.0085 2.9E-07 67.1 8.9 84 174-264 1426-1515(2050)
122 1kgd_A CASK, peripheral plasma 96.3 0.0023 8E-08 53.4 3.4 25 175-199 5-29 (180)
123 1ly1_A Polynucleotide kinase; 96.3 0.0024 8.2E-08 52.9 3.5 22 176-197 3-24 (181)
124 3hjn_A DTMP kinase, thymidylat 96.3 0.014 4.7E-07 49.5 8.2 84 177-264 2-91 (197)
125 2xxa_A Signal recognition part 96.3 0.024 8.2E-07 54.2 10.7 29 174-202 99-127 (433)
126 3vaa_A Shikimate kinase, SK; s 96.3 0.0029 9.9E-08 53.7 3.9 27 174-200 24-50 (199)
127 1ex7_A Guanylate kinase; subst 96.2 0.0024 8.1E-08 53.7 3.1 25 176-200 2-26 (186)
128 1zp6_A Hypothetical protein AT 96.2 0.0027 9.4E-08 53.3 3.6 25 174-198 8-32 (191)
129 3uie_A Adenylyl-sulfate kinase 96.2 0.0036 1.2E-07 53.2 4.2 29 172-200 22-50 (200)
130 1kag_A SKI, shikimate kinase I 96.2 0.0027 9.2E-08 52.4 3.3 25 176-200 5-29 (173)
131 3tau_A Guanylate kinase, GMP k 96.2 0.0032 1.1E-07 53.9 3.8 27 174-200 7-33 (208)
132 2rhm_A Putative kinase; P-loop 96.2 0.0035 1.2E-07 52.6 4.0 25 175-199 5-29 (193)
133 1nks_A Adenylate kinase; therm 96.2 0.0031 1.1E-07 52.8 3.6 26 176-201 2-27 (194)
134 3trf_A Shikimate kinase, SK; a 96.2 0.0033 1.1E-07 52.5 3.7 26 175-200 5-30 (185)
135 4eun_A Thermoresistant glucoki 96.2 0.0034 1.2E-07 53.3 3.9 27 173-199 27-53 (200)
136 2zts_A Putative uncharacterize 96.1 0.014 4.7E-07 51.0 7.9 50 174-226 29-78 (251)
137 1kht_A Adenylate kinase; phosp 96.1 0.0034 1.2E-07 52.5 3.7 26 176-201 4-29 (192)
138 3t61_A Gluconokinase; PSI-biol 96.1 0.003 1E-07 53.7 3.3 25 175-199 18-42 (202)
139 4a1f_A DNAB helicase, replicat 96.1 0.12 4.1E-06 47.5 14.2 51 174-228 45-95 (338)
140 2hf9_A Probable hydrogenase ni 96.1 0.0052 1.8E-07 53.0 4.8 37 164-200 27-63 (226)
141 2qor_A Guanylate kinase; phosp 96.1 0.0033 1.1E-07 53.6 3.3 26 174-199 11-36 (204)
142 3a00_A Guanylate kinase, GMP k 96.1 0.0032 1.1E-07 52.9 3.1 25 176-200 2-26 (186)
143 3iij_A Coilin-interacting nucl 96.0 0.0037 1.3E-07 52.0 3.5 26 175-200 11-36 (180)
144 3tr0_A Guanylate kinase, GMP k 96.0 0.0042 1.4E-07 52.7 3.8 25 175-199 7-31 (205)
145 2j37_W Signal recognition part 96.0 0.069 2.4E-06 52.0 12.8 28 174-201 100-127 (504)
146 1gvn_B Zeta; postsegregational 96.0 0.0069 2.4E-07 54.7 5.1 26 174-199 32-57 (287)
147 3hws_A ATP-dependent CLP prote 96.0 0.0074 2.5E-07 56.4 5.5 46 155-200 16-76 (363)
148 2c95_A Adenylate kinase 1; tra 95.9 0.0051 1.8E-07 51.7 3.9 27 174-200 8-34 (196)
149 3ney_A 55 kDa erythrocyte memb 95.9 0.005 1.7E-07 52.2 3.8 27 174-200 18-44 (197)
150 2yvu_A Probable adenylyl-sulfa 95.9 0.0058 2E-07 51.1 4.2 28 174-201 12-39 (186)
151 3e70_C DPA, signal recognition 95.9 0.094 3.2E-06 48.1 12.6 29 173-201 127-155 (328)
152 1tev_A UMP-CMP kinase; ploop, 95.9 0.0049 1.7E-07 51.7 3.7 26 175-200 3-28 (196)
153 2ze6_A Isopentenyl transferase 95.9 0.0046 1.6E-07 54.8 3.6 25 176-200 2-26 (253)
154 1vma_A Cell division protein F 95.9 0.037 1.3E-06 50.3 9.7 39 174-214 103-141 (306)
155 3tqc_A Pantothenate kinase; bi 95.9 0.024 8.4E-07 51.8 8.5 27 174-200 91-117 (321)
156 3umf_A Adenylate kinase; rossm 95.9 0.0054 1.9E-07 52.9 3.9 27 174-200 28-54 (217)
157 2j41_A Guanylate kinase; GMP, 95.9 0.0053 1.8E-07 52.1 3.9 26 174-199 5-30 (207)
158 2q6t_A DNAB replication FORK h 95.9 0.043 1.5E-06 52.7 10.7 52 174-228 199-250 (444)
159 1via_A Shikimate kinase; struc 95.9 0.0045 1.5E-07 51.2 3.3 25 176-200 5-29 (175)
160 2jaq_A Deoxyguanosine kinase; 95.9 0.005 1.7E-07 52.1 3.6 24 177-200 2-25 (205)
161 2wsm_A Hydrogenase expression/ 95.9 0.0055 1.9E-07 52.7 4.0 39 162-200 17-55 (221)
162 1tue_A Replication protein E1; 95.9 0.0071 2.4E-07 51.4 4.4 37 164-200 46-83 (212)
163 1ukz_A Uridylate kinase; trans 95.9 0.0055 1.9E-07 52.0 3.8 26 174-199 14-39 (203)
164 1lvg_A Guanylate kinase, GMP k 95.9 0.0041 1.4E-07 52.8 3.0 25 175-199 4-28 (198)
165 1knq_A Gluconate kinase; ALFA/ 95.9 0.0058 2E-07 50.5 3.9 25 175-199 8-32 (175)
166 2r6a_A DNAB helicase, replicat 95.9 0.048 1.6E-06 52.5 10.9 51 174-227 202-252 (454)
167 1ye8_A Protein THEP1, hypothet 95.9 0.0057 2E-07 51.0 3.8 24 177-200 2-25 (178)
168 2plr_A DTMP kinase, probable t 95.9 0.0058 2E-07 52.0 3.9 27 175-201 4-30 (213)
169 2bwj_A Adenylate kinase 5; pho 95.8 0.0056 1.9E-07 51.6 3.8 26 175-200 12-37 (199)
170 1odf_A YGR205W, hypothetical 3 95.8 0.0077 2.6E-07 54.4 4.8 54 173-226 29-83 (290)
171 2ffh_A Protein (FFH); SRP54, s 95.8 0.037 1.3E-06 52.7 9.7 28 174-201 97-124 (425)
172 1xjc_A MOBB protein homolog; s 95.8 0.0067 2.3E-07 50.0 4.0 34 174-208 3-36 (169)
173 2bdt_A BH3686; alpha-beta prot 95.8 0.0053 1.8E-07 51.5 3.4 22 176-197 3-24 (189)
174 3nbx_X ATPase RAVA; AAA+ ATPas 95.8 0.0039 1.3E-07 60.8 2.9 44 155-200 23-66 (500)
175 2vli_A Antibiotic resistance p 95.8 0.0041 1.4E-07 51.7 2.7 26 175-200 5-30 (183)
176 2bbw_A Adenylate kinase 4, AK4 95.8 0.0059 2E-07 53.7 3.8 27 174-200 26-52 (246)
177 1y63_A LMAJ004144AAA protein; 95.8 0.0071 2.4E-07 50.6 4.2 25 174-198 9-33 (184)
178 3asz_A Uridine kinase; cytidin 95.8 0.0058 2E-07 52.2 3.7 27 174-200 5-31 (211)
179 3cm0_A Adenylate kinase; ATP-b 95.8 0.0063 2.1E-07 50.8 3.8 26 175-200 4-29 (186)
180 2iyv_A Shikimate kinase, SK; t 95.8 0.0051 1.8E-07 51.3 3.2 25 176-200 3-27 (184)
181 1e6c_A Shikimate kinase; phosp 95.7 0.0056 1.9E-07 50.4 3.3 25 176-200 3-27 (173)
182 1g5t_A COB(I)alamin adenosyltr 95.7 0.017 5.7E-07 48.7 6.1 116 175-292 28-163 (196)
183 1zuh_A Shikimate kinase; alpha 95.7 0.0068 2.3E-07 49.7 3.7 27 174-200 6-32 (168)
184 1qf9_A UMP/CMP kinase, protein 95.7 0.0067 2.3E-07 50.7 3.7 26 175-200 6-31 (194)
185 1um8_A ATP-dependent CLP prote 95.7 0.011 3.8E-07 55.5 5.5 26 175-200 72-97 (376)
186 2cdn_A Adenylate kinase; phosp 95.7 0.0081 2.8E-07 50.9 4.2 27 174-200 19-45 (201)
187 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.0068 2.3E-07 53.9 3.8 26 175-200 4-29 (260)
188 4gp7_A Metallophosphoesterase; 95.7 0.0051 1.7E-07 50.9 2.8 23 174-196 8-30 (171)
189 3gmt_A Adenylate kinase; ssgci 95.7 0.068 2.3E-06 46.3 10.0 25 176-200 9-33 (230)
190 3l0o_A Transcription terminati 95.7 0.0057 2E-07 57.0 3.3 51 165-216 164-216 (427)
191 2wwf_A Thymidilate kinase, put 95.7 0.0076 2.6E-07 51.4 3.9 32 175-207 10-41 (212)
192 1nn5_A Similar to deoxythymidy 95.7 0.008 2.7E-07 51.3 4.0 33 174-207 8-40 (215)
193 1cke_A CK, MSSA, protein (cyti 95.7 0.0071 2.4E-07 52.2 3.7 24 176-199 6-29 (227)
194 1uf9_A TT1252 protein; P-loop, 95.6 0.0075 2.6E-07 51.0 3.8 26 173-198 6-31 (203)
195 1zak_A Adenylate kinase; ATP:A 95.6 0.0068 2.3E-07 52.3 3.6 27 174-200 4-30 (222)
196 2ga8_A Hypothetical 39.9 kDa p 95.6 0.013 4.5E-07 54.1 5.6 30 172-201 21-50 (359)
197 1s96_A Guanylate kinase, GMP k 95.6 0.0069 2.4E-07 52.4 3.5 27 174-200 15-41 (219)
198 1znw_A Guanylate kinase, GMP k 95.6 0.0071 2.4E-07 51.6 3.5 26 174-199 19-44 (207)
199 1j8m_F SRP54, signal recogniti 95.6 0.051 1.7E-06 49.2 9.4 87 175-263 98-189 (297)
200 2z0h_A DTMP kinase, thymidylat 95.6 0.024 8.2E-07 47.5 6.8 25 177-201 2-26 (197)
201 1zd8_A GTP:AMP phosphotransfer 95.6 0.0073 2.5E-07 52.3 3.6 26 174-199 6-31 (227)
202 1z6g_A Guanylate kinase; struc 95.6 0.0063 2.1E-07 52.5 3.1 26 174-199 22-47 (218)
203 1ypw_A Transitional endoplasmi 95.6 0.0014 4.8E-08 68.0 -1.3 152 153-324 476-662 (806)
204 1aky_A Adenylate kinase; ATP:A 95.6 0.0085 2.9E-07 51.6 3.8 26 175-200 4-29 (220)
205 1gtv_A TMK, thymidylate kinase 95.5 0.0049 1.7E-07 52.7 2.2 26 176-201 1-26 (214)
206 1uj2_A Uridine-cytidine kinase 95.5 0.009 3.1E-07 52.7 3.9 28 173-200 20-47 (252)
207 1htw_A HI0065; nucleotide-bind 95.5 0.008 2.7E-07 49.0 3.3 27 173-199 31-57 (158)
208 2pt5_A Shikimate kinase, SK; a 95.5 0.0091 3.1E-07 48.8 3.7 24 177-200 2-25 (168)
209 2pbr_A DTMP kinase, thymidylat 95.5 0.0088 3E-07 50.1 3.7 24 177-200 2-25 (195)
210 2qt1_A Nicotinamide riboside k 95.5 0.0082 2.8E-07 51.1 3.5 26 174-199 20-45 (207)
211 2if2_A Dephospho-COA kinase; a 95.5 0.0081 2.8E-07 51.0 3.4 22 176-197 2-23 (204)
212 1q57_A DNA primase/helicase; d 95.5 0.069 2.4E-06 52.2 10.5 51 174-227 241-291 (503)
213 2p5t_B PEZT; postsegregational 95.5 0.012 4E-07 52.1 4.5 27 174-200 31-57 (253)
214 3fwy_A Light-independent proto 95.5 0.01 3.5E-07 54.2 4.3 41 173-215 46-86 (314)
215 1rj9_A FTSY, signal recognitio 95.4 0.012 4.1E-07 53.5 4.5 28 174-201 101-128 (304)
216 4e22_A Cytidylate kinase; P-lo 95.4 0.011 3.6E-07 52.3 4.0 27 174-200 26-52 (252)
217 3cmw_A Protein RECA, recombina 95.4 0.032 1.1E-06 61.7 8.5 84 174-264 1430-1519(1706)
218 3aez_A Pantothenate kinase; tr 95.4 0.0093 3.2E-07 54.5 3.7 29 173-201 88-116 (312)
219 4akg_A Glutathione S-transfera 95.4 0.043 1.5E-06 63.5 9.7 138 176-323 1268-1431(2695)
220 3tlx_A Adenylate kinase 2; str 95.4 0.011 3.8E-07 51.9 4.0 26 174-199 28-53 (243)
221 2jeo_A Uridine-cytidine kinase 95.4 0.011 3.6E-07 52.0 3.8 26 174-199 24-49 (245)
222 2v54_A DTMP kinase, thymidylat 95.4 0.01 3.4E-07 50.3 3.5 25 175-199 4-28 (204)
223 3fb4_A Adenylate kinase; psych 95.3 0.01 3.5E-07 50.8 3.6 24 177-200 2-25 (216)
224 1ls1_A Signal recognition part 95.3 0.073 2.5E-06 48.1 9.5 87 174-263 97-189 (295)
225 3cmw_A Protein RECA, recombina 95.3 0.036 1.2E-06 61.3 8.6 86 174-266 382-473 (1706)
226 1jjv_A Dephospho-COA kinase; P 95.3 0.0092 3.1E-07 50.7 3.1 22 176-197 3-24 (206)
227 3bgw_A DNAB-like replicative h 95.3 0.059 2E-06 51.7 9.1 51 174-228 196-246 (444)
228 1m7g_A Adenylylsulfate kinase; 95.3 0.013 4.3E-07 50.2 3.9 28 173-200 23-50 (211)
229 3vr4_D V-type sodium ATPase su 95.2 0.021 7.3E-07 54.4 5.7 99 166-264 141-258 (465)
230 1np6_A Molybdopterin-guanine d 95.2 0.013 4.6E-07 48.5 3.8 27 175-201 6-32 (174)
231 3dl0_A Adenylate kinase; phosp 95.2 0.012 4E-07 50.5 3.5 23 177-199 2-24 (216)
232 3ld9_A DTMP kinase, thymidylat 95.1 0.031 1.1E-06 48.3 6.0 56 172-228 18-74 (223)
233 3lv8_A DTMP kinase, thymidylat 95.1 0.044 1.5E-06 47.8 7.0 37 175-212 27-63 (236)
234 2i3b_A HCR-ntpase, human cance 95.1 0.012 4.2E-07 49.5 3.3 24 177-200 3-26 (189)
235 2onk_A Molybdate/tungstate ABC 95.1 0.013 4.4E-07 51.4 3.5 26 173-199 23-48 (240)
236 3cmu_A Protein RECA, recombina 95.1 0.048 1.7E-06 61.2 8.7 85 174-265 382-472 (2050)
237 2f1r_A Molybdopterin-guanine d 95.1 0.013 4.4E-07 48.5 3.3 26 176-201 3-28 (171)
238 4tmk_A Protein (thymidylate ki 95.1 0.051 1.7E-06 46.6 7.2 53 175-228 3-55 (213)
239 3tmk_A Thymidylate kinase; pho 95.1 0.05 1.7E-06 46.7 7.1 27 175-201 5-31 (216)
240 2pez_A Bifunctional 3'-phospho 95.1 0.016 5.4E-07 48.0 3.9 28 174-201 4-31 (179)
241 1cr0_A DNA primase/helicase; R 95.1 0.047 1.6E-06 49.2 7.3 39 174-213 34-72 (296)
242 3lnc_A Guanylate kinase, GMP k 95.0 0.009 3.1E-07 51.9 2.3 25 175-199 27-52 (231)
243 3tif_A Uncharacterized ABC tra 95.0 0.014 4.8E-07 51.0 3.5 25 174-198 30-54 (235)
244 3r20_A Cytidylate kinase; stru 95.0 0.016 5.5E-07 50.4 3.8 26 175-200 9-34 (233)
245 3b9q_A Chloroplast SRP recepto 95.0 0.016 5.5E-07 52.7 3.9 28 174-201 99-126 (302)
246 1ak2_A Adenylate kinase isoenz 95.0 0.018 6.2E-07 50.1 4.1 26 175-200 16-41 (233)
247 3p32_A Probable GTPase RV1496/ 95.0 0.035 1.2E-06 51.7 6.2 38 163-200 65-104 (355)
248 2pcj_A ABC transporter, lipopr 95.0 0.011 3.9E-07 51.1 2.7 25 174-198 29-53 (224)
249 3exa_A TRNA delta(2)-isopenten 95.0 0.015 5.2E-07 52.7 3.6 26 175-200 3-28 (322)
250 1g41_A Heat shock protein HSLU 94.9 0.016 5.4E-07 55.5 3.8 46 155-200 16-75 (444)
251 3llm_A ATP-dependent RNA helic 94.9 0.072 2.5E-06 46.2 7.9 56 176-231 77-134 (235)
252 1vht_A Dephospho-COA kinase; s 94.9 0.017 5.9E-07 49.5 3.8 23 175-197 4-26 (218)
253 3b85_A Phosphate starvation-in 94.9 0.012 4E-07 50.5 2.6 24 175-198 22-45 (208)
254 2eyu_A Twitching motility prot 94.9 0.038 1.3E-06 49.1 6.0 28 173-200 23-50 (261)
255 3gqb_B V-type ATP synthase bet 94.9 0.021 7.3E-07 54.4 4.6 99 166-264 137-261 (464)
256 2xb4_A Adenylate kinase; ATP-b 94.9 0.017 5.7E-07 49.9 3.6 23 177-199 2-24 (223)
257 3k1j_A LON protease, ATP-depen 94.9 0.017 5.8E-07 57.9 4.1 46 153-200 40-85 (604)
258 3d3q_A TRNA delta(2)-isopenten 94.9 0.016 5.6E-07 53.3 3.7 25 176-200 8-32 (340)
259 3ake_A Cytidylate kinase; CMP 94.9 0.018 6.1E-07 48.8 3.7 24 177-200 4-27 (208)
260 2grj_A Dephospho-COA kinase; T 94.9 0.018 6.1E-07 48.6 3.6 26 174-199 11-36 (192)
261 3be4_A Adenylate kinase; malar 94.8 0.017 6E-07 49.5 3.6 25 176-200 6-30 (217)
262 4eaq_A DTMP kinase, thymidylat 94.8 0.033 1.1E-06 48.3 5.4 28 174-201 25-52 (229)
263 3upu_A ATP-dependent DNA helic 94.8 0.057 2E-06 52.1 7.5 43 159-202 30-72 (459)
264 1e4v_A Adenylate kinase; trans 94.8 0.018 6.2E-07 49.3 3.6 23 177-199 2-24 (214)
265 2cbz_A Multidrug resistance-as 94.8 0.015 5.2E-07 50.8 3.1 26 174-199 30-55 (237)
266 3foz_A TRNA delta(2)-isopenten 94.8 0.018 6.1E-07 52.2 3.6 27 174-200 9-35 (316)
267 3crm_A TRNA delta(2)-isopenten 94.8 0.017 5.9E-07 52.7 3.5 25 176-200 6-30 (323)
268 2f6r_A COA synthase, bifunctio 94.8 0.018 6.1E-07 51.7 3.6 23 174-196 74-96 (281)
269 1sq5_A Pantothenate kinase; P- 94.8 0.019 6.5E-07 52.3 3.8 28 173-200 78-105 (308)
270 1oix_A RAS-related protein RAB 94.7 0.018 6.2E-07 48.2 3.4 25 175-199 29-53 (191)
271 1b0u_A Histidine permease; ABC 94.7 0.016 5.4E-07 51.6 3.1 26 174-199 31-56 (262)
272 3nwj_A ATSK2; P loop, shikimat 94.7 0.017 5.8E-07 50.9 3.3 26 175-200 48-73 (250)
273 2d2e_A SUFC protein; ABC-ATPas 94.7 0.017 5.8E-07 50.9 3.3 25 174-198 28-52 (250)
274 3a8t_A Adenylate isopentenyltr 94.7 0.017 5.7E-07 53.1 3.2 27 174-200 39-65 (339)
275 3zvl_A Bifunctional polynucleo 94.7 0.017 6E-07 55.0 3.5 27 173-199 256-282 (416)
276 2c61_A A-type ATP synthase non 94.7 0.027 9.3E-07 53.9 4.7 99 166-264 142-259 (469)
277 1ji0_A ABC transporter; ATP bi 94.7 0.015 5.1E-07 51.0 2.8 26 174-199 31-56 (240)
278 1a7j_A Phosphoribulokinase; tr 94.7 0.012 4.2E-07 53.1 2.3 27 174-200 4-30 (290)
279 4edh_A DTMP kinase, thymidylat 94.7 0.07 2.4E-06 45.7 7.0 32 175-207 6-37 (213)
280 2og2_A Putative signal recogni 94.7 0.022 7.7E-07 52.9 4.1 28 174-201 156-183 (359)
281 3gfo_A Cobalt import ATP-bindi 94.7 0.017 5.7E-07 51.8 3.1 25 174-198 33-57 (275)
282 1g6h_A High-affinity branched- 94.6 0.015 5.2E-07 51.5 2.8 26 174-199 32-57 (257)
283 2f9l_A RAB11B, member RAS onco 94.6 0.019 6.3E-07 48.4 3.2 24 176-199 6-29 (199)
284 2zu0_C Probable ATP-dependent 94.6 0.021 7.2E-07 50.9 3.6 25 174-198 45-69 (267)
285 1sgw_A Putative ABC transporte 94.6 0.014 4.7E-07 50.2 2.3 26 174-199 34-59 (214)
286 2olj_A Amino acid ABC transpor 94.6 0.018 6.2E-07 51.2 3.1 26 174-199 49-74 (263)
287 1zu4_A FTSY; GTPase, signal re 94.6 0.028 9.7E-07 51.4 4.5 28 174-201 104-131 (320)
288 2pze_A Cystic fibrosis transme 94.6 0.017 5.7E-07 50.3 2.8 26 174-199 33-58 (229)
289 2qe7_A ATP synthase subunit al 94.6 0.044 1.5E-06 52.8 5.9 95 166-264 152-264 (502)
290 3mfy_A V-type ATP synthase alp 94.6 0.14 4.9E-06 49.8 9.4 96 165-264 216-334 (588)
291 1ltq_A Polynucleotide kinase; 94.6 0.021 7.1E-07 51.7 3.5 23 176-198 3-25 (301)
292 1mv5_A LMRA, multidrug resista 94.5 0.019 6.5E-07 50.4 3.1 25 174-198 27-51 (243)
293 2ff7_A Alpha-hemolysin translo 94.5 0.017 5.8E-07 50.9 2.8 26 174-199 34-59 (247)
294 4g1u_C Hemin import ATP-bindin 94.5 0.019 6.5E-07 51.2 3.1 26 174-199 36-61 (266)
295 2r9v_A ATP synthase subunit al 94.5 0.047 1.6E-06 52.7 5.9 95 166-264 165-277 (515)
296 2v9p_A Replication protein E1; 94.5 0.023 7.9E-07 51.6 3.6 27 173-199 124-150 (305)
297 1vpl_A ABC transporter, ATP-bi 94.5 0.02 6.8E-07 50.7 3.1 26 174-199 40-65 (256)
298 1yrb_A ATP(GTP)binding protein 94.5 0.04 1.4E-06 48.6 5.1 27 174-200 13-39 (262)
299 2ghi_A Transport protein; mult 94.5 0.02 6.9E-07 50.8 3.1 25 174-198 45-69 (260)
300 3end_A Light-independent proto 94.5 0.029 9.9E-07 50.9 4.3 42 172-215 38-79 (307)
301 2ixe_A Antigen peptide transpo 94.4 0.021 7E-07 51.1 3.1 26 174-199 44-69 (271)
302 2dyk_A GTP-binding protein; GT 94.4 0.026 8.9E-07 45.3 3.5 24 176-199 2-25 (161)
303 2wji_A Ferrous iron transport 94.4 0.022 7.5E-07 46.4 3.1 23 176-198 4-26 (165)
304 2zej_A Dardarin, leucine-rich 94.4 0.02 6.9E-07 47.5 2.9 22 177-198 4-25 (184)
305 1nlf_A Regulatory protein REPA 94.4 0.022 7.5E-07 51.0 3.3 27 174-200 29-55 (279)
306 2qi9_C Vitamin B12 import ATP- 94.4 0.019 6.5E-07 50.6 2.7 26 174-199 25-50 (249)
307 3sop_A Neuronal-specific septi 94.4 0.024 8.2E-07 50.6 3.4 23 177-199 4-26 (270)
308 2ck3_A ATP synthase subunit al 94.4 0.092 3.1E-06 50.7 7.6 99 166-264 152-272 (510)
309 2nq2_C Hypothetical ABC transp 94.4 0.019 6.6E-07 50.7 2.7 26 174-199 30-55 (253)
310 2yz2_A Putative ABC transporte 94.4 0.022 7.5E-07 50.7 3.1 26 174-199 32-57 (266)
311 1moz_A ARL1, ADP-ribosylation 94.3 0.027 9.2E-07 46.4 3.5 34 164-197 6-40 (183)
312 2yhs_A FTSY, cell division pro 94.3 0.033 1.1E-06 53.8 4.5 28 174-201 292-319 (503)
313 2ihy_A ABC transporter, ATP-bi 94.3 0.02 6.7E-07 51.4 2.7 26 174-199 46-71 (279)
314 2fz4_A DNA repair protein RAD2 94.3 0.18 6.2E-06 43.8 8.9 38 159-199 95-132 (237)
315 2ce2_X GTPase HRAS; signaling 94.3 0.025 8.6E-07 45.4 3.2 23 177-199 5-27 (166)
316 2ocp_A DGK, deoxyguanosine kin 94.3 0.028 9.7E-07 49.0 3.7 26 175-200 2-27 (241)
317 1z2a_A RAS-related protein RAB 94.3 0.026 8.8E-07 45.6 3.2 24 176-199 6-29 (168)
318 2orw_A Thymidine kinase; TMTK, 94.3 0.034 1.2E-06 46.5 4.0 108 176-291 4-112 (184)
319 1zj6_A ADP-ribosylation factor 94.3 0.038 1.3E-06 45.8 4.3 33 165-198 7-39 (187)
320 1fzq_A ADP-ribosylation factor 94.2 0.04 1.4E-06 45.6 4.2 25 174-198 15-39 (181)
321 3v9p_A DTMP kinase, thymidylat 94.1 0.087 3E-06 45.6 6.4 29 174-202 24-52 (227)
322 2ged_A SR-beta, signal recogni 94.1 0.036 1.2E-06 46.1 3.8 26 174-199 47-72 (193)
323 2wjg_A FEOB, ferrous iron tran 94.1 0.026 8.8E-07 46.8 2.9 23 176-198 8-30 (188)
324 1svm_A Large T antigen; AAA+ f 94.1 0.032 1.1E-06 52.3 3.8 27 173-199 167-193 (377)
325 1r8s_A ADP-ribosylation factor 94.1 0.032 1.1E-06 44.9 3.4 22 178-199 3-24 (164)
326 1u8z_A RAS-related protein RAL 94.1 0.028 9.6E-07 45.3 3.0 23 177-199 6-28 (168)
327 3fvq_A Fe(3+) IONS import ATP- 94.0 0.028 9.7E-07 52.2 3.3 26 174-199 29-54 (359)
328 3eph_A TRNA isopentenyltransfe 94.0 0.033 1.1E-06 52.4 3.6 25 176-200 3-27 (409)
329 2lkc_A Translation initiation 94.0 0.034 1.2E-06 45.5 3.4 25 174-198 7-31 (178)
330 1q3t_A Cytidylate kinase; nucl 94.0 0.04 1.4E-06 47.9 4.0 27 174-200 15-41 (236)
331 1kao_A RAP2A; GTP-binding prot 94.0 0.032 1.1E-06 44.8 3.2 23 177-199 5-27 (167)
332 2qmh_A HPR kinase/phosphorylas 94.0 0.027 9.3E-07 47.5 2.7 25 175-199 34-58 (205)
333 1ek0_A Protein (GTP-binding pr 94.0 0.03 1E-06 45.3 3.0 23 177-199 5-27 (170)
334 2nzj_A GTP-binding protein REM 94.0 0.03 1E-06 45.6 3.0 24 176-199 5-28 (175)
335 1c1y_A RAS-related protein RAP 94.0 0.033 1.1E-06 44.9 3.2 23 177-199 5-27 (167)
336 2pjz_A Hypothetical protein ST 93.9 0.026 9E-07 50.1 2.7 24 175-198 30-53 (263)
337 2r8r_A Sensor protein; KDPD, P 93.9 0.04 1.4E-06 47.5 3.8 37 177-215 8-44 (228)
338 3con_A GTPase NRAS; structural 93.9 0.033 1.1E-06 46.2 3.2 23 177-199 23-45 (190)
339 1z08_A RAS-related protein RAB 93.9 0.034 1.2E-06 45.0 3.2 24 176-199 7-30 (170)
340 1z0j_A RAB-22, RAS-related pro 93.9 0.031 1.1E-06 45.2 3.0 23 177-199 8-30 (170)
341 2vp4_A Deoxynucleoside kinase; 93.9 0.023 7.8E-07 49.3 2.2 25 174-198 19-43 (230)
342 1nij_A Hypothetical protein YJ 93.9 0.029 9.9E-07 51.4 3.0 26 174-199 3-28 (318)
343 1ky3_A GTP-binding protein YPT 93.8 0.032 1.1E-06 45.7 3.0 25 175-199 8-32 (182)
344 1m7b_A RND3/RHOE small GTP-bin 93.8 0.035 1.2E-06 46.0 3.2 24 176-199 8-31 (184)
345 3vr4_A V-type sodium ATPase ca 93.8 0.23 7.9E-06 48.6 9.2 95 166-264 222-339 (600)
346 1nrj_B SR-beta, signal recogni 93.8 0.043 1.5E-06 46.7 3.8 26 174-199 11-36 (218)
347 1z47_A CYSA, putative ABC-tran 93.8 0.033 1.1E-06 51.7 3.3 26 174-199 40-65 (355)
348 2bbs_A Cystic fibrosis transme 93.8 0.032 1.1E-06 50.3 3.1 26 174-199 63-88 (290)
349 1svi_A GTP-binding protein YSX 93.8 0.041 1.4E-06 45.8 3.6 26 174-199 22-47 (195)
350 3ihw_A Centg3; RAS, centaurin, 93.8 0.036 1.2E-06 46.1 3.2 23 177-199 22-44 (184)
351 2erx_A GTP-binding protein DI- 93.8 0.032 1.1E-06 45.2 2.9 22 177-198 5-26 (172)
352 1wms_A RAB-9, RAB9, RAS-relate 93.8 0.037 1.3E-06 45.2 3.2 24 176-199 8-31 (177)
353 1g16_A RAS-related protein SEC 93.8 0.037 1.3E-06 44.7 3.2 23 177-199 5-27 (170)
354 3io3_A DEHA2D07832P; chaperone 93.8 0.097 3.3E-06 48.4 6.3 31 170-200 13-43 (348)
355 4gzl_A RAS-related C3 botulinu 93.8 0.037 1.3E-06 46.8 3.3 27 173-199 28-54 (204)
356 3kta_A Chromosome segregation 93.8 0.037 1.3E-06 45.8 3.2 24 176-199 27-50 (182)
357 3q72_A GTP-binding protein RAD 93.7 0.033 1.1E-06 44.9 2.9 21 177-197 4-24 (166)
358 2hxs_A RAB-26, RAS-related pro 93.7 0.036 1.2E-06 45.3 3.1 23 177-199 8-30 (178)
359 3jvv_A Twitching mobility prot 93.7 0.042 1.4E-06 51.1 3.8 112 174-295 122-234 (356)
360 2fn4_A P23, RAS-related protei 93.7 0.038 1.3E-06 45.2 3.2 25 175-199 9-33 (181)
361 3q85_A GTP-binding protein REM 93.7 0.037 1.3E-06 44.8 3.1 21 177-197 4-24 (169)
362 3rlf_A Maltose/maltodextrin im 93.7 0.036 1.2E-06 51.9 3.3 26 174-199 28-53 (381)
363 1g8f_A Sulfate adenylyltransfe 93.7 0.063 2.1E-06 52.3 5.1 46 156-201 374-421 (511)
364 4hlc_A DTMP kinase, thymidylat 93.7 0.14 4.7E-06 43.5 6.7 25 176-200 3-27 (205)
365 3nh6_A ATP-binding cassette SU 93.7 0.032 1.1E-06 50.7 2.8 26 174-199 79-104 (306)
366 2yyz_A Sugar ABC transporter, 93.7 0.041 1.4E-06 51.1 3.7 26 174-199 28-53 (359)
367 2it1_A 362AA long hypothetical 93.7 0.041 1.4E-06 51.2 3.6 26 174-199 28-53 (362)
368 2gj8_A MNME, tRNA modification 93.7 0.035 1.2E-06 45.6 2.9 23 176-198 5-27 (172)
369 1r2q_A RAS-related protein RAB 93.7 0.04 1.4E-06 44.5 3.2 22 177-198 8-29 (170)
370 1u0j_A DNA replication protein 93.6 0.08 2.7E-06 46.9 5.3 36 164-199 91-128 (267)
371 3c5c_A RAS-like protein 12; GD 93.6 0.037 1.3E-06 46.1 3.0 24 176-199 22-45 (187)
372 2v3c_C SRP54, signal recogniti 93.6 0.034 1.2E-06 53.2 3.0 28 174-201 98-125 (432)
373 1upt_A ARL1, ADP-ribosylation 93.6 0.042 1.4E-06 44.5 3.2 24 176-199 8-31 (171)
374 1g29_1 MALK, maltose transport 93.6 0.038 1.3E-06 51.6 3.3 26 174-199 28-53 (372)
375 1tf7_A KAIC; homohexamer, hexa 93.6 0.1 3.6E-06 51.2 6.6 28 174-201 280-307 (525)
376 2yv5_A YJEQ protein; hydrolase 93.6 0.065 2.2E-06 48.6 4.8 33 163-199 156-188 (302)
377 1f6b_A SAR1; gtpases, N-termin 93.6 0.059 2E-06 45.3 4.2 24 174-197 24-47 (198)
378 1m2o_B GTP-binding protein SAR 93.6 0.041 1.4E-06 45.9 3.2 24 175-198 23-46 (190)
379 3oaa_A ATP synthase subunit al 93.6 0.09 3.1E-06 50.6 5.8 95 166-264 152-264 (513)
380 1z0f_A RAB14, member RAS oncog 93.5 0.042 1.4E-06 44.8 3.2 25 175-199 15-39 (179)
381 3tui_C Methionine import ATP-b 93.5 0.045 1.5E-06 50.9 3.6 26 174-199 53-78 (366)
382 1cp2_A CP2, nitrogenase iron p 93.5 0.052 1.8E-06 48.1 4.0 38 176-215 2-39 (269)
383 2iwr_A Centaurin gamma 1; ANK 93.5 0.034 1.2E-06 45.6 2.6 23 177-199 9-31 (178)
384 2cjw_A GTP-binding protein GEM 93.5 0.045 1.5E-06 45.8 3.4 23 176-198 7-29 (192)
385 2bme_A RAB4A, RAS-related prot 93.5 0.039 1.3E-06 45.5 2.9 24 176-199 11-34 (186)
386 1v43_A Sugar-binding transport 93.5 0.045 1.5E-06 51.2 3.6 25 174-198 36-60 (372)
387 2y8e_A RAB-protein 6, GH09086P 93.5 0.04 1.4E-06 45.0 2.9 23 177-199 16-38 (179)
388 3d31_A Sulfate/molybdate ABC t 93.5 0.038 1.3E-06 51.2 3.0 26 174-199 25-50 (348)
389 3kkq_A RAS-related protein M-R 93.5 0.041 1.4E-06 45.3 3.0 24 176-199 19-42 (183)
390 1p9r_A General secretion pathw 93.5 0.069 2.4E-06 50.8 4.9 29 172-200 164-192 (418)
391 4dsu_A GTPase KRAS, isoform 2B 93.5 0.044 1.5E-06 45.2 3.2 23 177-199 6-28 (189)
392 3bc1_A RAS-related protein RAB 93.5 0.044 1.5E-06 45.3 3.2 24 176-199 12-35 (195)
393 2ewv_A Twitching motility prot 93.4 0.062 2.1E-06 50.3 4.5 108 173-293 134-245 (372)
394 3iqw_A Tail-anchored protein t 93.4 0.11 3.8E-06 47.7 6.1 32 170-201 11-42 (334)
395 3pqc_A Probable GTP-binding pr 93.4 0.048 1.7E-06 45.2 3.4 25 175-199 23-47 (195)
396 2cxx_A Probable GTP-binding pr 93.4 0.037 1.3E-06 45.8 2.7 23 177-199 3-25 (190)
397 3dz8_A RAS-related protein RAB 93.4 0.048 1.6E-06 45.4 3.3 23 177-199 25-47 (191)
398 3t1o_A Gliding protein MGLA; G 93.4 0.044 1.5E-06 45.5 3.1 23 177-199 16-38 (198)
399 1fx0_A ATP synthase alpha chai 93.4 0.05 1.7E-06 52.5 3.7 86 175-264 163-265 (507)
400 1p5z_B DCK, deoxycytidine kina 93.3 0.025 8.5E-07 50.1 1.5 26 174-199 23-48 (263)
401 2oil_A CATX-8, RAS-related pro 93.3 0.047 1.6E-06 45.4 3.2 24 176-199 26-49 (193)
402 2a9k_A RAS-related protein RAL 93.3 0.044 1.5E-06 45.1 3.0 24 176-199 19-42 (187)
403 1mh1_A RAC1; GTP-binding, GTPa 93.3 0.048 1.7E-06 44.8 3.2 23 177-199 7-29 (186)
404 3f9v_A Minichromosome maintena 93.3 0.024 8.3E-07 56.6 1.5 23 177-199 329-351 (595)
405 3t5g_A GTP-binding protein RHE 93.3 0.045 1.5E-06 45.0 2.9 25 175-199 6-30 (181)
406 2b6h_A ADP-ribosylation factor 93.3 0.045 1.5E-06 45.8 2.9 27 172-198 26-52 (192)
407 2bov_A RAla, RAS-related prote 93.3 0.045 1.5E-06 46.0 3.0 25 175-199 14-38 (206)
408 1oxx_K GLCV, glucose, ABC tran 93.3 0.035 1.2E-06 51.5 2.5 25 174-198 30-54 (353)
409 3bwd_D RAC-like GTP-binding pr 93.3 0.05 1.7E-06 44.6 3.2 24 176-199 9-32 (182)
410 2efe_B Small GTP-binding prote 93.2 0.05 1.7E-06 44.5 3.2 24 176-199 13-36 (181)
411 2qnr_A Septin-2, protein NEDD5 93.2 0.04 1.4E-06 50.0 2.7 21 178-198 21-41 (301)
412 1tq4_A IIGP1, interferon-induc 93.2 0.054 1.9E-06 51.3 3.7 24 174-197 68-91 (413)
413 2g6b_A RAS-related protein RAB 93.2 0.052 1.8E-06 44.4 3.2 24 176-199 11-34 (180)
414 2atv_A RERG, RAS-like estrogen 93.2 0.06 2E-06 45.0 3.7 26 174-199 27-52 (196)
415 2h92_A Cytidylate kinase; ross 93.2 0.052 1.8E-06 46.4 3.3 24 176-199 4-27 (219)
416 3cbq_A GTP-binding protein REM 93.2 0.038 1.3E-06 46.4 2.4 22 175-196 23-44 (195)
417 3tw8_B RAS-related protein RAB 93.1 0.047 1.6E-06 44.6 2.9 24 175-198 9-32 (181)
418 2ew1_A RAS-related protein RAB 93.1 0.052 1.8E-06 45.9 3.2 25 175-199 26-50 (201)
419 2www_A Methylmalonic aciduria 93.1 0.059 2E-06 50.0 3.8 27 174-200 73-99 (349)
420 4dkx_A RAS-related protein RAB 93.1 0.049 1.7E-06 46.8 3.0 21 178-198 16-36 (216)
421 1zd9_A ADP-ribosylation factor 93.1 0.054 1.8E-06 45.0 3.2 24 176-199 23-46 (188)
422 1vg8_A RAS-related protein RAB 93.1 0.048 1.7E-06 45.9 3.0 25 175-199 8-32 (207)
423 1ksh_A ARF-like protein 2; sma 93.1 0.048 1.6E-06 45.1 2.8 27 173-199 16-42 (186)
424 3clv_A RAB5 protein, putative; 93.1 0.054 1.8E-06 45.2 3.2 24 176-199 8-31 (208)
425 2fg5_A RAB-22B, RAS-related pr 93.1 0.054 1.8E-06 45.2 3.2 24 176-199 24-47 (192)
426 1gwn_A RHO-related GTP-binding 93.1 0.054 1.8E-06 45.9 3.2 25 175-199 28-52 (205)
427 2afh_E Nitrogenase iron protei 93.1 0.067 2.3E-06 48.0 4.0 39 175-215 2-40 (289)
428 2qm8_A GTPase/ATPase; G protei 93.1 0.059 2E-06 49.7 3.7 28 173-200 53-80 (337)
429 2gf9_A RAS-related protein RAB 93.0 0.051 1.8E-06 45.1 3.0 24 176-199 23-46 (189)
430 3kjh_A CO dehydrogenase/acetyl 93.0 0.12 4E-06 45.0 5.4 39 178-218 3-41 (254)
431 2a5j_A RAS-related protein RAB 93.0 0.056 1.9E-06 45.0 3.2 23 177-199 23-45 (191)
432 3oes_A GTPase rhebl1; small GT 93.0 0.055 1.9E-06 45.5 3.2 25 175-199 24-48 (201)
433 1pui_A ENGB, probable GTP-bind 93.0 0.037 1.3E-06 46.8 2.1 26 173-198 24-49 (210)
434 3gd7_A Fusion complex of cysti 93.0 0.053 1.8E-06 51.0 3.3 25 174-198 46-70 (390)
435 3cr8_A Sulfate adenylyltranfer 93.0 0.077 2.6E-06 52.3 4.6 28 174-201 368-395 (552)
436 3reg_A RHO-like small GTPase; 93.0 0.057 2E-06 45.0 3.2 24 176-199 24-47 (194)
437 2fh5_B SR-beta, signal recogni 93.0 0.057 1.9E-06 45.8 3.2 25 175-199 7-31 (214)
438 2gf0_A GTP-binding protein DI- 93.0 0.057 2E-06 45.0 3.2 23 176-198 9-31 (199)
439 1lw7_A Transcriptional regulat 92.9 0.053 1.8E-06 50.6 3.1 26 175-200 170-195 (365)
440 3tkl_A RAS-related protein RAB 92.9 0.06 2.1E-06 44.8 3.2 24 176-199 17-40 (196)
441 1z06_A RAS-related protein RAB 92.9 0.06 2.1E-06 44.6 3.2 25 175-199 20-44 (189)
442 3llu_A RAS-related GTP-binding 92.9 0.05 1.7E-06 45.5 2.7 23 176-198 21-43 (196)
443 2gza_A Type IV secretion syste 92.9 0.049 1.7E-06 50.8 2.9 27 174-200 174-200 (361)
444 1zbd_A Rabphilin-3A; G protein 92.9 0.054 1.9E-06 45.5 2.9 24 176-199 9-32 (203)
445 1u0l_A Probable GTPase ENGC; p 92.9 0.091 3.1E-06 47.6 4.5 34 163-199 160-193 (301)
446 2g3y_A GTP-binding protein GEM 92.8 0.058 2E-06 46.1 3.0 22 176-197 38-59 (211)
447 2p5s_A RAS and EF-hand domain 92.8 0.062 2.1E-06 45.1 3.2 26 174-199 27-52 (199)
448 2bcg_Y Protein YP2, GTP-bindin 92.8 0.062 2.1E-06 45.3 3.2 24 176-199 9-32 (206)
449 1x3s_A RAS-related protein RAB 92.8 0.063 2.2E-06 44.5 3.2 24 176-199 16-39 (195)
450 3fdi_A Uncharacterized protein 92.8 0.074 2.5E-06 45.1 3.7 26 175-200 6-31 (201)
451 2o52_A RAS-related protein RAB 92.8 0.052 1.8E-06 45.6 2.7 25 175-199 25-49 (200)
452 2q3h_A RAS homolog gene family 92.8 0.053 1.8E-06 45.5 2.7 24 176-199 21-44 (201)
453 2h17_A ADP-ribosylation factor 92.7 0.051 1.7E-06 44.8 2.5 23 176-198 22-44 (181)
454 2axn_A 6-phosphofructo-2-kinas 92.6 0.079 2.7E-06 51.9 4.0 28 174-201 34-61 (520)
455 1c9k_A COBU, adenosylcobinamid 92.6 0.088 3E-06 43.7 3.7 34 178-217 2-35 (180)
456 2obl_A ESCN; ATPase, hydrolase 92.6 0.069 2.4E-06 49.4 3.4 28 173-200 69-96 (347)
457 2atx_A Small GTP binding prote 92.6 0.064 2.2E-06 44.6 2.9 24 176-199 19-42 (194)
458 2fv8_A H6, RHO-related GTP-bin 92.5 0.07 2.4E-06 45.1 3.2 24 176-199 26-49 (207)
459 2j1l_A RHO-related GTP-binding 92.5 0.059 2E-06 45.9 2.6 23 176-198 35-57 (214)
460 2qu8_A Putative nucleolar GTP- 92.5 0.068 2.3E-06 46.0 3.0 25 174-198 28-52 (228)
461 2hup_A RAS-related protein RAB 92.4 0.074 2.5E-06 44.8 3.2 25 175-199 29-53 (201)
462 3cph_A RAS-related protein SEC 92.4 0.075 2.6E-06 44.9 3.2 25 175-199 20-44 (213)
463 2j0v_A RAC-like GTP-binding pr 92.4 0.076 2.6E-06 44.9 3.2 24 176-199 10-33 (212)
464 2fu5_C RAS-related protein RAB 92.4 0.042 1.4E-06 45.2 1.5 23 176-198 9-31 (183)
465 2gco_A H9, RHO-related GTP-bin 92.3 0.078 2.7E-06 44.5 3.2 24 176-199 26-49 (201)
466 3q3j_B RHO-related GTP-binding 92.3 0.079 2.7E-06 45.1 3.2 24 176-199 28-51 (214)
467 4bas_A ADP-ribosylation factor 92.3 0.072 2.4E-06 44.4 2.9 25 175-199 17-41 (199)
468 2rcn_A Probable GTPase ENGC; Y 92.3 0.077 2.6E-06 49.2 3.3 24 176-199 216-239 (358)
469 2npi_A Protein CLP1; CLP1-PCF1 92.3 0.068 2.3E-06 51.5 3.0 26 174-199 137-162 (460)
470 3lxx_A GTPase IMAP family memb 92.2 0.075 2.6E-06 46.2 3.0 26 174-199 28-53 (239)
471 2qag_B Septin-6, protein NEDD5 92.2 0.066 2.3E-06 50.8 2.8 21 178-198 45-65 (427)
472 1m8p_A Sulfate adenylyltransfe 92.2 0.14 4.9E-06 50.7 5.4 28 174-201 395-422 (573)
473 2p67_A LAO/AO transport system 92.2 0.088 3E-06 48.6 3.6 28 173-200 54-81 (341)
474 1ega_A Protein (GTP-binding pr 92.2 0.081 2.8E-06 47.9 3.3 26 174-199 7-32 (301)
475 4dzz_A Plasmid partitioning pr 92.2 0.19 6.4E-06 42.2 5.4 42 176-219 2-44 (206)
476 2il1_A RAB12; G-protein, GDP, 92.2 0.076 2.6E-06 44.2 2.9 23 177-199 28-50 (192)
477 3fkq_A NTRC-like two-domain pr 92.2 0.21 7.1E-06 46.7 6.2 40 173-214 141-181 (373)
478 2pt7_A CAG-ALFA; ATPase, prote 92.1 0.054 1.9E-06 49.8 2.0 106 175-293 171-276 (330)
479 1f2t_A RAD50 ABC-ATPase; DNA d 92.1 0.099 3.4E-06 41.9 3.3 25 175-199 23-47 (149)
480 1bif_A 6-phosphofructo-2-kinas 92.0 0.099 3.4E-06 50.6 3.9 27 174-200 38-64 (469)
481 3cwq_A Para family chromosome 92.0 0.26 8.9E-06 41.8 6.1 41 177-220 2-43 (209)
482 3k53_A Ferrous iron transport 92.0 0.096 3.3E-06 46.5 3.5 24 176-199 4-27 (271)
483 2h57_A ADP-ribosylation factor 92.0 0.05 1.7E-06 45.2 1.5 24 176-199 22-45 (190)
484 3tqf_A HPR(Ser) kinase; transf 91.9 0.097 3.3E-06 43.0 3.1 23 176-198 17-39 (181)
485 2f7s_A C25KG, RAS-related prot 91.7 0.095 3.2E-06 44.5 3.0 23 176-198 26-48 (217)
486 3cpj_B GTP-binding protein YPT 91.7 0.1 3.4E-06 44.7 3.2 24 176-199 14-37 (223)
487 1x6v_B Bifunctional 3'-phospho 91.7 0.11 3.8E-06 51.8 3.9 27 174-200 51-77 (630)
488 3k9g_A PF-32 protein; ssgcid, 91.7 0.48 1.6E-05 41.7 7.8 43 173-218 25-68 (267)
489 2gks_A Bifunctional SAT/APS ki 91.7 0.19 6.5E-06 49.5 5.5 44 158-201 353-398 (546)
490 2dpy_A FLII, flagellum-specifi 91.6 0.1 3.5E-06 50.0 3.4 28 173-200 155-182 (438)
491 2qag_C Septin-7; cell cycle, c 91.6 0.077 2.6E-06 50.4 2.5 22 178-199 34-55 (418)
492 3euj_A Chromosome partition pr 91.6 0.1 3.4E-06 50.5 3.3 25 176-200 30-54 (483)
493 4b3f_X DNA-binding protein smu 91.5 0.31 1.1E-05 49.1 7.0 60 163-227 195-254 (646)
494 4dhe_A Probable GTP-binding pr 91.3 0.076 2.6E-06 45.3 2.0 26 174-199 28-53 (223)
495 2x77_A ADP-ribosylation factor 91.3 0.14 4.7E-06 42.3 3.5 25 173-197 20-44 (189)
496 3iev_A GTP-binding protein ERA 91.2 0.11 3.7E-06 47.2 3.0 25 174-198 9-33 (308)
497 1t9h_A YLOQ, probable GTPase E 91.2 0.059 2E-06 48.9 1.2 24 175-198 173-196 (307)
498 3zq6_A Putative arsenical pump 91.1 0.37 1.3E-05 44.0 6.6 27 176-202 15-41 (324)
499 1yqt_A RNAse L inhibitor; ATP- 91.1 0.11 3.9E-06 51.0 3.3 20 177-196 49-68 (538)
500 2aka_B Dynamin-1; fusion prote 91.1 0.25 8.5E-06 44.2 5.3 26 174-199 25-50 (299)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.7e-33 Score=279.60 Aligned_cols=198 Identities=14% Similarity=0.167 Sum_probs=161.5
Q ss_pred cchhHHHHHHHHHhcCC---CccEEEEEcCCCCcHHHHHHHHHH--HhhhcCCCCeEEEEEeCCCC--CHHHHHHHHHHH
Q 042806 157 ESRMSTLNDILDALKNP---DVNMLGIYGMGGIVKTTLAKEVAR--KAETEKLFDQVIFVEVSKIQ--DIRKIQGEIADK 229 (390)
Q Consensus 157 ~gR~~~~~~l~~~L~~~---~~~vi~I~G~~GvGKTtLa~~v~~--~~~~~~~f~~~~wv~v~~~~--~~~~l~~~i~~~ 229 (390)
+||+.++++|.++|..+ +.++|+|+||||+||||||+++|+ +.+.+.+|++++||++++.+ +...++..|+..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999653 579999999999999999999998 45666789999999999875 789999999999
Q ss_pred hCCCCC--------CCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhhhhhcCCC
Q 042806 230 LGLTLH--------EESDSGRARSLRNRLKKEKTILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDVLSRKMDS 301 (390)
Q Consensus 230 l~~~~~--------~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v~~~~~~~ 301 (390)
++.... ..+...+...+.+.|.++++|||||||||+...+ .+. ..+||+||||||+..++......
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCCC
Confidence 986522 1122335678888888863599999999997654 111 12799999999999987632224
Q ss_pred cceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCC
Q 042806 302 QQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARALGTR 360 (390)
Q Consensus 302 ~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~~~ 360 (390)
...|+|++|+.++||+||.+.++.....+++++++++|+++|+|+||||..+|+.|+.+
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~ 343 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK 343 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc
Confidence 46899999999999999999988554457788899999999999999999999998754
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.95 E-value=8.2e-28 Score=262.55 Aligned_cols=216 Identities=21% Similarity=0.298 Sum_probs=166.0
Q ss_pred ccCcccccchhHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhhh-cC-CCCeEEEEEeCCCCC--HHHHH
Q 042806 150 IKDYEACESRMSTLNDILDALK--NPDVNMLGIYGMGGIVKTTLAKEVARKAET-EK-LFDQVIFVEVSKIQD--IRKIQ 223 (390)
Q Consensus 150 ~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~-~~-~f~~~~wv~v~~~~~--~~~l~ 223 (390)
|.+...|+||+.++++|.+.|. ++..++|+|+||||+||||||++++++... .. .|+.++|++++...+ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 3445679999999999999995 356899999999999999999999998643 23 356888999988543 34446
Q ss_pred HHHHHHhCCCCC-----CCCchHHHHHHHHHHhCC-CeEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhhhhh
Q 042806 224 GEIADKLGLTLH-----EESDSGRARSLRNRLKKE-KTILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDVLSR 297 (390)
Q Consensus 224 ~~i~~~l~~~~~-----~~~~~~~~~~l~~~l~~~-~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v~~~ 297 (390)
..++..+..... ..........+...+..+ ++|||||||+|+...|..+ .+||+||||||+..++..
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHh
Confidence 667777765332 123344556677777654 3599999999988776654 468999999999988754
Q ss_pred cCCCcceEecCC-CCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCCCCCCcccchhHHHHH
Q 042806 298 KMDSQQNFSVGV-LKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARALGTRDYLNGRTHWNSWGGLL 376 (390)
Q Consensus 298 ~~~~~~~~~l~~-L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~~~~~~~~~~~w~~~~~~l 376 (390)
.......+++.+ |+.++|++||...++.. .+++++++++|+++|+|+||||.++|++|+.++ ..|+++...|
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-----~~~~~~l~~l 345 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-----NRWAYYLRQL 345 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-----SCHHHHHHHH
T ss_pred hcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-----hHHHHHHHHH
Confidence 556668999996 99999999999988632 233445789999999999999999999999765 3577777666
Q ss_pred hhh
Q 042806 377 QLT 379 (390)
Q Consensus 377 ~~~ 379 (390)
+..
T Consensus 346 ~~~ 348 (1249)
T 3sfz_A 346 QNK 348 (1249)
T ss_dssp HSC
T ss_pred hhh
Confidence 543
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.94 E-value=3.3e-27 Score=242.66 Aligned_cols=197 Identities=19% Similarity=0.186 Sum_probs=147.5
Q ss_pred ccchhHHHHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe-EEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042806 156 CESRMSTLNDILDALKN-PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQ-VIFVEVSKIQDIRKIQGEIADKLGLT 233 (390)
Q Consensus 156 ~~gR~~~~~~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~l~~~i~~~l~~~ 233 (390)
.+||+.++++|.++|.. +..++|+|+||||+||||||++++++.+...+|+. ++|+++++.++...++..+...++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 49999999999999875 45789999999999999999999998766667986 99999999999888888887754321
Q ss_pred C---CCC---------CchHHHHHHHHHHh--CCCeEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhhhhhcC
Q 042806 234 L---HEE---------SDSGRARSLRNRLK--KEKTILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDVLSRKM 299 (390)
Q Consensus 234 ~---~~~---------~~~~~~~~l~~~l~--~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v~~~~~ 299 (390)
. ... +.......+.+.|. .++++||||||+|+...|+.+. +||+||||||+..++.. .
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~-l 281 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF-L 281 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH-H
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHh-c
Confidence 1 100 11223445666552 3455999999999988887652 68999999999888642 1
Q ss_pred CCcceEecC------CCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCCCCCCcccch
Q 042806 300 DSQQNFSVG------VLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARALGTRDYLNGRTHWN 370 (390)
Q Consensus 300 ~~~~~~~l~------~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~~~~~~~~~~~w~ 370 (390)
.....++++ +|+.+|||+||.+.++.. . .++..+ .|+|+||||.++|+.|+.+.. +.++|+
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~--s~eeW~ 348 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--P---QDLPRE---VLTTNPRRLSIIAESIRDGLA--TWDNWK 348 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--T---TTHHHH---HCCCCHHHHHHHHHHHHHSCS--SHHHHH
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHcCCC--H---HHHHHH---HhCCCHHHHHHHHHHHhCCCC--CHHHHh
Confidence 222356666 999999999999986432 1 122333 499999999999999998742 245664
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.94 E-value=3.4e-26 Score=231.50 Aligned_cols=210 Identities=22% Similarity=0.326 Sum_probs=154.5
Q ss_pred CcccccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhh-cCCC-CeEEEEEeCCCCCHHHHHHHH-
Q 042806 152 DYEACESRMSTLNDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKAET-EKLF-DQVIFVEVSKIQDIRKIQGEI- 226 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~-~~~f-~~~~wv~v~~~~~~~~l~~~i- 226 (390)
....|+||+.++++|.++|.. +..++++|+|+||+||||||.+++++... ..+| +.++|++++.. +...++..+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 345799999999999999974 46789999999999999999999987643 4558 58999999875 344444444
Q ss_pred --HHHhCCC-----CCCCCchHHHHHHHHHHhCC-CeEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhhhhhc
Q 042806 227 --ADKLGLT-----LHEESDSGRARSLRNRLKKE-KTILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDVLSRK 298 (390)
Q Consensus 227 --~~~l~~~-----~~~~~~~~~~~~l~~~l~~~-~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v~~~~ 298 (390)
+..++.. ....+.......+.+.+.+. +++||||||+|+...+..+ .++++||+|||+..++...
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhc
Confidence 4455421 11123344556677777652 4599999999986655433 4689999999998875432
Q ss_pred CCCcceEec---CCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCCCCCCcccchhHHHH
Q 042806 299 MDSQQNFSV---GVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARALGTRDYLNGRTHWNSWGGL 375 (390)
Q Consensus 299 ~~~~~~~~l---~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~~~~~~~~~~~w~~~~~~ 375 (390)
. ...+++ ++|+.+++++||...++... ....+.+.+|+++|+|+||||..+|+.|+.++ ..|+.+...
T Consensus 274 ~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~--~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-----~~w~~~l~~ 344 (591)
T 1z6t_A 274 M--GPKYVVPVESSLGKEKGLEILSLFVNMKK--ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-----NRWEYYLKQ 344 (591)
T ss_dssp C--SCEEEEECCSSCCHHHHHHHHHHHHTSCG--GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-----TCHHHHHHH
T ss_pred C--CCceEeecCCCCCHHHHHHHHHHHhCCCc--ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-----hhHHHHHHH
Confidence 2 334444 58999999999999987421 22234678999999999999999999998753 368777666
Q ss_pred Hhh
Q 042806 376 LQL 378 (390)
Q Consensus 376 l~~ 378 (390)
|..
T Consensus 345 l~~ 347 (591)
T 1z6t_A 345 LQN 347 (591)
T ss_dssp HHS
T ss_pred HHH
Confidence 654
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.68 E-value=3.3e-16 Score=147.41 Aligned_cols=196 Identities=14% Similarity=0.127 Sum_probs=129.2
Q ss_pred cCcccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC------CHHHHHH
Q 042806 151 KDYEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ------DIRKIQG 224 (390)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~------~~~~l~~ 224 (390)
.....|+||+.+++.|.+++..+ +++.|+|++|+|||||++.+++... .+|+++.... +...++.
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHHHH
Confidence 34567999999999999988754 7899999999999999999987751 6777775432 5667777
Q ss_pred HHHHHhCC-----------------CCC--CCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcc---------cccccCCC
Q 042806 225 EIADKLGL-----------------TLH--EESDSGRARSLRNRLKKEKTILVILDNIWGNLD---------FQAVGIPH 276 (390)
Q Consensus 225 ~i~~~l~~-----------------~~~--~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~---------~~~l~~~l 276 (390)
.+...+.. ..+ ..........+.+....+++++|||||++.... +..+....
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 77666542 000 011222333444444322259999999976432 12222111
Q ss_pred CCCCCCcEEEEEecchhhhhh---------cC--CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC
Q 042806 277 GDDRKGCKVLLTARSLDVLSR---------KM--DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAG 345 (390)
Q Consensus 277 ~~~~~~s~IivTtr~~~v~~~---------~~--~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G 345 (390)
+..++.++|+|++....... .. .....+++.+|+.+|+.+++...+....... ..+.+..|++.|+|
T Consensus 160 -~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~-~~~~~~~i~~~tgG 237 (350)
T 2qen_A 160 -DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV-PENEIEEAVELLDG 237 (350)
T ss_dssp -HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHHTT
T ss_pred -HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCC
Confidence 11247889999887542111 01 1124899999999999999987653211111 23467899999999
Q ss_pred ChHHHHHHHHHh
Q 042806 346 LPVSIVTVARAL 357 (390)
Q Consensus 346 lPLai~~l~~~L 357 (390)
+|+++..++..+
T Consensus 238 ~P~~l~~~~~~~ 249 (350)
T 2qen_A 238 IPGWLVVFGVEY 249 (350)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999998764
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.65 E-value=1.7e-15 Score=142.85 Aligned_cols=194 Identities=11% Similarity=0.172 Sum_probs=124.8
Q ss_pred CcccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-----CCHHHHHHHH
Q 042806 152 DYEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI-----QDIRKIQGEI 226 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-----~~~~~l~~~i 226 (390)
....|+||+.+++.|.+ +.. +++.|+|++|+|||||++.+.+.... ..+|+.+... .+...++..+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHH
Confidence 34579999999999999 765 69999999999999999999987642 2578887643 3555666555
Q ss_pred HHHhCC------------------CCCCC--C------chHHHHHHHHHHhCC--CeEEEEEeCCCCCc-----cccccc
Q 042806 227 ADKLGL------------------TLHEE--S------DSGRARSLRNRLKKE--KTILVILDNIWGNL-----DFQAVG 273 (390)
Q Consensus 227 ~~~l~~------------------~~~~~--~------~~~~~~~l~~~l~~~--~~~LlVlDdv~~~~-----~~~~l~ 273 (390)
.+.+.. ..+.. + .......+.+.+... ++++|||||++... .+..+.
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHH
Confidence 544310 00000 0 011233444444321 36999999997532 222221
Q ss_pred CCCCCCCCCcEEEEEecchhhhhh---------cCC-C-cceEecCCCCHHHHHHHHHHhhCC-CCCCCchHHHHHHHHH
Q 042806 274 IPHGDDRKGCKVLLTARSLDVLSR---------KMD-S-QQNFSVGVLKEDEAWSLFKKMAGD-YIEGSEFKWVAKDVAR 341 (390)
Q Consensus 274 ~~l~~~~~~s~IivTtr~~~v~~~---------~~~-~-~~~~~l~~L~~~ea~~lf~~~~~~-~~~~~~~~~~~~~i~~ 341 (390)
..+.+..++.++|+|++....... ... . ...+++.+|+.+++.+++...+.. ....... ..|++
T Consensus 162 ~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~ 237 (357)
T 2fna_A 162 AYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYE 237 (357)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHH
T ss_pred HHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHH
Confidence 111122246789999997543111 111 1 258999999999999999876531 1112221 68999
Q ss_pred HcCCChHHHHHHHHHhc
Q 042806 342 ECAGLPVSIVTVARALG 358 (390)
Q Consensus 342 ~~~GlPLai~~l~~~L~ 358 (390)
.|+|+|+++..++..+.
T Consensus 238 ~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 238 KIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp HHCSCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHc
Confidence 99999999999987764
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.59 E-value=2.6e-14 Score=137.70 Aligned_cols=199 Identities=17% Similarity=0.147 Sum_probs=132.7
Q ss_pred ccccchhHHHHHHHHHh-c----C--CCccEEEE--EcCCCCcHHHHHHHHHHHhhhc---CCCC-eEEEEEeCCCCCHH
Q 042806 154 EACESRMSTLNDILDAL-K----N--PDVNMLGI--YGMGGIVKTTLAKEVARKAETE---KLFD-QVIFVEVSKIQDIR 220 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L-~----~--~~~~vi~I--~G~~GvGKTtLa~~v~~~~~~~---~~f~-~~~wv~v~~~~~~~ 220 (390)
..++||+.+++.|.+.+ . . ...+.+.| +|++|+|||||++.+++..... ..+. ..+|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 57999999999998888 3 2 34567777 9999999999999999886542 1133 36788877777889
Q ss_pred HHHHHHHHHhCCCCCC--CCchHHHHHHHHHHh-CCCeEEEEEeCCCCCc--------ccccccCCC---CCCC--CCcE
Q 042806 221 KIQGEIADKLGLTLHE--ESDSGRARSLRNRLK-KEKTILVILDNIWGNL--------DFQAVGIPH---GDDR--KGCK 284 (390)
Q Consensus 221 ~l~~~i~~~l~~~~~~--~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~~--------~~~~l~~~l---~~~~--~~s~ 284 (390)
+++..++..++...+. .+.......+.+.+. .+++++|||||++... .+..+...+ +..+ .+..
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 9999999999765332 223344556666664 2457999999997532 222221111 1112 4456
Q ss_pred EEEEecchhhhh--------hcCCCcceEecCCCCHHHHHHHHHHhhC---CCCCCCchHHHHHHHHHHcC------CCh
Q 042806 285 VLLTARSLDVLS--------RKMDSQQNFSVGVLKEDEAWSLFKKMAG---DYIEGSEFKWVAKDVARECA------GLP 347 (390)
Q Consensus 285 IivTtr~~~v~~--------~~~~~~~~~~l~~L~~~ea~~lf~~~~~---~~~~~~~~~~~~~~i~~~~~------GlP 347 (390)
+|+||+...+.. ........+++.+|+.++++++|.+.+. .. ..-.++....|++.|+ |.|
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhccCCCcH
Confidence 888887544211 0111123499999999999999986643 21 1122456789999999 999
Q ss_pred HHHHHHH
Q 042806 348 VSIVTVA 354 (390)
Q Consensus 348 Lai~~l~ 354 (390)
..+..+.
T Consensus 260 ~~~~~l~ 266 (412)
T 1w5s_A 260 RRAIVAL 266 (412)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665554
No 8
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.49 E-value=3.8e-13 Score=119.28 Aligned_cols=199 Identities=12% Similarity=0.111 Sum_probs=118.3
Q ss_pred CcccccchhHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042806 152 DYEACESRMSTLNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL 230 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l 230 (390)
....++||+..++.+..++..+. .+.+.|+|++|+|||||++.+++.......+.. ......... ..+....
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~ 93 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDNC-REIEQGR 93 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHHH-HHHHTTC
T ss_pred cHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHHH-HHHhccC
Confidence 34579999999999999987654 457899999999999999999988753211100 000000000 0000000
Q ss_pred C-----CCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecchhh-hhhc
Q 042806 231 G-----LTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARSLDV-LSRK 298 (390)
Q Consensus 231 ~-----~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~~~v-~~~~ 298 (390)
. ..............+.+.+. .+++.+||+||++.. ..++.+...+.....+..+|+||+.... ....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 94 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp CSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHH
T ss_pred CcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHH
Confidence 0 00000001111222222221 234589999999753 3344444333333457788888876432 1111
Q ss_pred CCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhc
Q 042806 299 MDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARALG 358 (390)
Q Consensus 299 ~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~ 358 (390)
......+++.+++.++..+++.+.+....... .++....|++.|+|.|..+..+...+.
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTDQAI 232 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22246899999999999999998875221111 245678999999999999988876554
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=4.1e-13 Score=127.84 Aligned_cols=200 Identities=16% Similarity=0.176 Sum_probs=130.6
Q ss_pred ccccchhHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCC-CCeEEEEEeCCCCCHHHHHHHHHH
Q 042806 154 EACESRMSTLNDILDALK----NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKL-FDQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~-f~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
..++||+.+++.+.+++. ....+.+.|+|++|+|||||++.+++....... -...+|+++....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999887 345678999999999999999999998754311 124678887776777888888888
Q ss_pred HhCCCCCCC--CchHHHHHHHHHHhC-CCeEEEEEeCCCCCc------ccccccCCCCC-CCCCcEEEEEecchhhhhh-
Q 042806 229 KLGLTLHEE--SDSGRARSLRNRLKK-EKTILVILDNIWGNL------DFQAVGIPHGD-DRKGCKVLLTARSLDVLSR- 297 (390)
Q Consensus 229 ~l~~~~~~~--~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~------~~~~l~~~l~~-~~~~s~IivTtr~~~v~~~- 297 (390)
.++...... +.......+.+.+.. +++.+||||+++... .+..+...+.. ...+..+|+||+.......
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 776543321 233445566666654 336999999996432 22222111111 2335677888876532111
Q ss_pred -----cCCCcceEecCCCCHHHHHHHHHHhhCC-CCCCCchHHHHHHHHHHcC---CChHHHHHH
Q 042806 298 -----KMDSQQNFSVGVLKEDEAWSLFKKMAGD-YIEGSEFKWVAKDVARECA---GLPVSIVTV 353 (390)
Q Consensus 298 -----~~~~~~~~~l~~L~~~ea~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---GlPLai~~l 353 (390)
..-....+++.+++.++..++|.+.+.. .....-..++...+++.++ |.|..+..+
T Consensus 180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~l 244 (386)
T 2qby_A 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDL 244 (386)
T ss_dssp TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 1111258999999999999999886531 0011122456677888887 999854433
No 10
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.47 E-value=9.3e-13 Score=115.22 Aligned_cols=188 Identities=12% Similarity=0.052 Sum_probs=118.3
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGL 232 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~ 232 (390)
...++||+..++.+.+++.....+.+.|+|++|+|||+|++.+++.......-...+.+..+.......+...+......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 45789999999999999987766669999999999999999999876432111224444544444433332222211111
Q ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc--ccccccCCCCCCCCCcEEEEEecchhhh-hhcCCCcceEecCC
Q 042806 233 TLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL--DFQAVGIPHGDDRKGCKVLLTARSLDVL-SRKMDSQQNFSVGV 309 (390)
Q Consensus 233 ~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~IivTtr~~~v~-~~~~~~~~~~~l~~ 309 (390)
.. ....++.+||+||++... ..+.+...+.....++++|+||+..... .........+++.+
T Consensus 96 ~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~ 160 (226)
T 2chg_A 96 AP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKP 160 (226)
T ss_dssp CC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred cC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCC
Confidence 00 012345899999997652 2333333332234567888888764321 11112234899999
Q ss_pred CCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHH
Q 042806 310 LKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARA 356 (390)
Q Consensus 310 L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~ 356 (390)
++.++..+++.+.+...... -.++....+++.++|.|..+..+...
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999877411111 12356778999999999976555433
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=1.2e-12 Score=124.87 Aligned_cols=195 Identities=14% Similarity=0.096 Sum_probs=130.4
Q ss_pred ccccchhHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcC----C--CCeEEEEEeCCCC-CHHHH
Q 042806 154 EACESRMSTLNDILDALK----NPDVNMLGIYGMGGIVKTTLAKEVARKAETEK----L--FDQVIFVEVSKIQ-DIRKI 222 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~----~--f~~~~wv~v~~~~-~~~~l 222 (390)
..++||+.+++.+.+++. ....+.+.|+|++|+||||||+.+++...... . ....+|++++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 579999999998887664 34567899999999999999999999864321 1 2356788877766 88889
Q ss_pred HHHHHHHh-CCCCC--CCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcc---ccc-ccCCCCCCCCCcEEEEEecchhh-
Q 042806 223 QGEIADKL-GLTLH--EESDSGRARSLRNRLKKEKTILVILDNIWGNLD---FQA-VGIPHGDDRKGCKVLLTARSLDV- 294 (390)
Q Consensus 223 ~~~i~~~l-~~~~~--~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~---~~~-l~~~l~~~~~~s~IivTtr~~~v- 294 (390)
+..++..+ +.... ..+.......+.+.+...+ .+|||||++.... .+. +. .+.....+..+|+||+....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~~~~~l~-~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRGGDIVLY-QLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTTSHHHHH-HHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCCCceeHH-HHhcCCcceEEEEEECCCchH
Confidence 99988887 32221 1233455667777777766 4999999975421 111 11 11111167789999886521
Q ss_pred ---hhhc-CCCcceEecCCCCHHHHHHHHHHhhC---C-CCCCCchHHHHHHHHHHcC---CChH-HHHHH
Q 042806 295 ---LSRK-MDSQQNFSVGVLKEDEAWSLFKKMAG---D-YIEGSEFKWVAKDVARECA---GLPV-SIVTV 353 (390)
Q Consensus 295 ---~~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~---~-~~~~~~~~~~~~~i~~~~~---GlPL-ai~~l 353 (390)
.... ......+++.+++.++..++|...+. . ...+ ++....+++.|+ |.|. ++..+
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l 245 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLL 245 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHH
Confidence 1110 11123899999999999999998753 1 1122 245677888888 9887 44443
No 12
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.39 E-value=5e-12 Score=120.38 Aligned_cols=193 Identities=17% Similarity=0.159 Sum_probs=128.8
Q ss_pred ccccchhHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhhhc----CCCCeEEEEEeCCCCCHHHHHHH
Q 042806 154 EACESRMSTLNDILDALKN----PDVNMLGIYGMGGIVKTTLAKEVARKAETE----KLFDQVIFVEVSKIQDIRKIQGE 225 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~----~~f~~~~wv~v~~~~~~~~l~~~ 225 (390)
..++||+.+++.+..++.. ...+.+.|+|++|+|||||++.+++..... +.-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 5799999999999998843 456789999999999999999999887432 11124678888888889999999
Q ss_pred HHHHhCCCCCCC--CchHHHHHHHHHHhC-CCeEEEEEeCCCCCcc----ccccc---CCCCCC--CCCcEEEEEecchh
Q 042806 226 IADKLGLTLHEE--SDSGRARSLRNRLKK-EKTILVILDNIWGNLD----FQAVG---IPHGDD--RKGCKVLLTARSLD 293 (390)
Q Consensus 226 i~~~l~~~~~~~--~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~----~~~l~---~~l~~~--~~~s~IivTtr~~~ 293 (390)
++..++...+.. +.......+.+.+.. +++++|+||+++.... .+.+. ...... ..+..+|+||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 999997654322 233445666667643 4579999999975421 12221 111111 34567888877642
Q ss_pred hh----hh--cCCCcceEecCCCCHHHHHHHHHHhhC---C-CCCCCchHHHHHHHHHHcC---CChHH
Q 042806 294 VL----SR--KMDSQQNFSVGVLKEDEAWSLFKKMAG---D-YIEGSEFKWVAKDVARECA---GLPVS 349 (390)
Q Consensus 294 v~----~~--~~~~~~~~~l~~L~~~ea~~lf~~~~~---~-~~~~~~~~~~~~~i~~~~~---GlPLa 349 (390)
.. .. ..-....+++.+++.++..+++.+.+. . ....+ +....+++.++ |.|-.
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~ 244 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARR 244 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHH
Confidence 21 11 111124899999999999999988753 1 12222 34667888888 99943
No 13
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.39 E-value=5.1e-13 Score=104.27 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=58.5
Q ss_pred HHHHHhhhhhhhhhhhchhhhhhhhHhHHHHHHHHhchHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHHH
Q 042806 9 VVEVAKCLAPPIYCQMSYLRKSKYTSNLQNLKTEVGIPEAERVSKQREVDKAKRRG-EEIEEYVEKWLTSVNGIIDEAEK 87 (390)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~l~~a~~~~-~~~~~~~~~wl~~l~~~~~d~ed 87 (390)
++.+++++.+.+.++...+. +++++++.|+..|..|++|+.+++.+. ...++.++.|+.+||+++||+||
T Consensus 3 v~~ll~KL~~ll~~E~~l~~---------gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLHK---------GVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh---------chHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777776666 455556666666666666888998763 34689999999999999999999
Q ss_pred hhhhhhhh
Q 042806 88 FTGVDARA 95 (390)
Q Consensus 88 ~ld~~~~~ 95 (390)
|||+|...
T Consensus 74 ~iD~f~~~ 81 (115)
T 3qfl_A 74 VVDKFLVQ 81 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998654
No 14
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.36 E-value=1.8e-11 Score=116.67 Aligned_cols=199 Identities=15% Similarity=0.152 Sum_probs=133.1
Q ss_pred ccccchhHHHHHHHHHhcC----CCcc--EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 042806 154 EACESRMSTLNDILDALKN----PDVN--MLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~----~~~~--vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~ 227 (390)
+.++||+.+++.+.+++.. .... .+.|+|++|+|||||++.+++....... ...+|++++...+...++..++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence 5799999999999888864 3334 8999999999999999999988754211 2467888888888889999999
Q ss_pred HHhCCCCCCC--CchHHHHHHHHHHhC-CCeEEEEEeCCCCC--cccccccCCCCCC-C---CCcEEEEEecchhhhhhc
Q 042806 228 DKLGLTLHEE--SDSGRARSLRNRLKK-EKTILVILDNIWGN--LDFQAVGIPHGDD-R---KGCKVLLTARSLDVLSRK 298 (390)
Q Consensus 228 ~~l~~~~~~~--~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~--~~~~~l~~~l~~~-~---~~s~IivTtr~~~v~~~~ 298 (390)
..++...+.. +.......+.+.+.. +++.+||||+++.. ..+..+...+... . .+..||++|+........
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 9887643322 334445555555542 44699999999764 2233332222111 1 467788888765332110
Q ss_pred C------CCcceEecCCCCHHHHHHHHHHhhCC-CCCCCchHHHHHHHHHHc---------CCChHHHHHH
Q 042806 299 M------DSQQNFSVGVLKEDEAWSLFKKMAGD-YIEGSEFKWVAKDVAREC---------AGLPVSIVTV 353 (390)
Q Consensus 299 ~------~~~~~~~l~~L~~~ea~~lf~~~~~~-~~~~~~~~~~~~~i~~~~---------~GlPLai~~l 353 (390)
. -....+++.+++.++..+++.+.+.. .....-.++....+++.+ +|.|..+..+
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 0 01237999999999999999887641 001122245778899999 7887655444
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=2.1e-11 Score=113.25 Aligned_cols=190 Identities=14% Similarity=0.045 Sum_probs=115.9
Q ss_pred CcccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 042806 152 DYEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLG 231 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~ 231 (390)
....++||+..++.+.+++..+..+.+.|+|++|+||||+|+.+++...........++++.+.......+ +.++..+.
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ 97 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHFA 97 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred CHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHHH
Confidence 34678999999999999998776655999999999999999999988643211112344444333232222 22222211
Q ss_pred CCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecchhh-hhhcCCCcceEecC
Q 042806 232 LTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARSLDV-LSRKMDSQQNFSVG 308 (390)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~~~v-~~~~~~~~~~~~l~ 308 (390)
.... .+..+++.++|+||++.. ..++.+...+.....++.+|+||+...- ..........+++.
T Consensus 98 ~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~ 164 (323)
T 1sxj_B 98 QKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYS 164 (323)
T ss_dssp HBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred hccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeec
Confidence 0000 000233589999999764 2333333333223456788888876322 11122234589999
Q ss_pred CCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHH-HHHHHHH
Q 042806 309 VLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVS-IVTVARA 356 (390)
Q Consensus 309 ~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLa-i~~l~~~ 356 (390)
+++.++..+++...+....... .++....|++.|+|.|.. +..+...
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDVKY-TNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999988764111111 134678899999999954 4444433
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.15 E-value=9.3e-11 Score=108.98 Aligned_cols=190 Identities=13% Similarity=0.047 Sum_probs=114.6
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGL 232 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~ 232 (390)
...++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++.......-...+.+..+....... +......+..
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 102 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINV-IREKVKEFAR 102 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHT-THHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHH-HHHHHHHHHh
Confidence 456899999999999998877666699999999999999999998864321001233333332111111 1111111000
Q ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecchhh-hhhcCCCcceEecCC
Q 042806 233 TLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARSLDV-LSRKMDSQQNFSVGV 309 (390)
Q Consensus 233 ~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~~~v-~~~~~~~~~~~~l~~ 309 (390)
.. .+..+++.++|+|+++.. ..+..+...+.....++++|+||..... ..........+++.+
T Consensus 103 ~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~ 168 (327)
T 1iqp_A 103 TK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRP 168 (327)
T ss_dssp SC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCC
T ss_pred hC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecC
Confidence 00 011134489999999754 2333343333223456788888876432 111111234789999
Q ss_pred CCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhc
Q 042806 310 LKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARALG 358 (390)
Q Consensus 310 L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~ 358 (390)
++.++..+++...+...... -.++....|++.++|.|..+..+...+.
T Consensus 169 l~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 169 LRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp CCHHHHHHHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999998877422211 1245678899999999997666554443
No 17
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.12 E-value=2.1e-09 Score=98.82 Aligned_cols=172 Identities=9% Similarity=0.055 Sum_probs=107.9
Q ss_pred cccccchhHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCC---C-C-eEEEEEeCCCCCHHHHH
Q 042806 153 YEACESRMSTLNDILDALK----NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKL---F-D-QVIFVEVSKIQDIRKIQ 223 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~---f-~-~~~wv~v~~~~~~~~l~ 223 (390)
...+.+|+.+++.|...|. ++..+.+.|+|++|+|||++++.+++....... . . ..+++++....+...++
T Consensus 19 ~~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 19 RELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 3448899999999887665 467788999999999999999999999864211 1 1 35677777778889999
Q ss_pred HHHHHHhCCCCC-CCCchHHHHHHHHHH--hCCCeEEEEEeCCCCCcccccccCCC--C-CCCCCcEEEEEecchhhhhh
Q 042806 224 GEIADKLGLTLH-EESDSGRARSLRNRL--KKEKTILVILDNIWGNLDFQAVGIPH--G-DDRKGCKVLLTARSLDVLSR 297 (390)
Q Consensus 224 ~~i~~~l~~~~~-~~~~~~~~~~l~~~l--~~~~~~LlVlDdv~~~~~~~~l~~~l--~-~~~~~s~IivTtr~~~v~~~ 297 (390)
..|++++..... .......+..+...+ ..+++++++||+++....-+.+...+ + .......||.++...+....
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 999999954321 112233344444443 23456999999997654222221111 1 11122334444443211110
Q ss_pred -------cCCCcceEecCCCCHHHHHHHHHHhhC
Q 042806 298 -------KMDSQQNFSVGVLKEDEAWSLFKKMAG 324 (390)
Q Consensus 298 -------~~~~~~~~~l~~L~~~ea~~lf~~~~~ 324 (390)
..-....+.+.|++.+|-.+++.+++.
T Consensus 179 ~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 011225799999999999999988874
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.08 E-value=1.2e-09 Score=101.14 Aligned_cols=187 Identities=11% Similarity=0.071 Sum_probs=115.0
Q ss_pred CcccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC-eEEEEEeCCCCCHHHHHHHHHHHh
Q 042806 152 DYEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFD-QVIFVEVSKIQDIRKIQGEIADKL 230 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~l~~~i~~~l 230 (390)
....++|++..+..+.+++..+..+.+.++|++|+|||++|+.+++...... +. ..+.++.+.......+
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~-------- 85 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGIDVV-------- 85 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-HHHHCEEEETTSTTCTTTS--------
T ss_pred CHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-ccCCeEEEeCccccChHHH--------
Confidence 3456899999999999998877665689999999999999999998863211 11 1233343332111100
Q ss_pred CCCCCCCCchHHHHHHHHH--HhCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecchh-hhhhcCCCcceE
Q 042806 231 GLTLHEESDSGRARSLRNR--LKKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARSLD-VLSRKMDSQQNF 305 (390)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~--l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~~~-v~~~~~~~~~~~ 305 (390)
......+... +..+++.++|+|+++.. .....+...+.....++++|+||.... +..........+
T Consensus 86 ---------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i 156 (319)
T 2chq_A 86 ---------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (319)
T ss_dssp ---------SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEE
T ss_pred ---------HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEE
Confidence 0011111100 11234589999999754 233444444433445678888876543 211112233589
Q ss_pred ecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042806 306 SVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARAL 357 (390)
Q Consensus 306 ~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L 357 (390)
++.+++.++..+++...+....... .++....+++.++|.|..+..+...+
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~i-~~~~l~~l~~~~~G~~r~~~~~l~~~ 207 (319)
T 2chq_A 157 RFKPVPKEAMKKRLLEICEKEGVKI-TEDGLEALIYISGGDFRKAINALQGA 207 (319)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCCCB-CHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999988774222211 24467789999999998765554333
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.99 E-value=3.4e-09 Score=100.32 Aligned_cols=195 Identities=12% Similarity=0.127 Sum_probs=112.5
Q ss_pred cccccchhHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 042806 153 YEACESRMSTLNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLG 231 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~ 231 (390)
...++||+..++.+...+..++ .+.+.|+|++|+||||+|+.+.+.......+.. ..+..... ...+.....
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~------~~~~~~~~-~~~~~~~~~ 87 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQGRF 87 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS------SCCSSSHH-HHHHHTSCC
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC------CCCcccHH-HHHHhccCC
Confidence 4569999999999999887654 457889999999999999999987643211100 00000000 111110000
Q ss_pred -----CCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecchh-hhhhcC
Q 042806 232 -----LTLHEESDSGRARSLRNRLK----KEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARSLD-VLSRKM 299 (390)
Q Consensus 232 -----~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~~~-v~~~~~ 299 (390)
..............+.+.+. .+++.++|+||++.. ...+.+...+.....+..+|++|.... +.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 00000001112233334332 234489999999754 233334333322334567777776432 212122
Q ss_pred CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042806 300 DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVAR 355 (390)
Q Consensus 300 ~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~ 355 (390)
.....+++.+++.++..+++.+.+....... ..+....|++.++|.|..+..+..
T Consensus 168 sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~-~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred hheeEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2346899999999999999987764111111 134577899999999998876643
No 20
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.98 E-value=3.4e-09 Score=98.42 Aligned_cols=176 Identities=12% Similarity=0.042 Sum_probs=108.4
Q ss_pred cccccchhHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 042806 153 YEACESRMSTLNDILDALKN-----PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~ 227 (390)
...++|++..+..+..++.. .....+.|+|++|+|||+||+.+++.... ...+++.+......++..
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~--- 82 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAA--- 82 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHH---
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHH---
Confidence 45789999888888777652 23467889999999999999999987642 134444443333332222
Q ss_pred HHhCCCCCCCCchHHHHHHHHHHhC--CCeEEEEEeCCCCCc--ccccccCCCC--------C----------CCCCcEE
Q 042806 228 DKLGLTLHEESDSGRARSLRNRLKK--EKTILVILDNIWGNL--DFQAVGIPHG--------D----------DRKGCKV 285 (390)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~~--~~~~LlVlDdv~~~~--~~~~l~~~l~--------~----------~~~~s~I 285 (390)
.+.. .++.+|+||+++... ....+...+. . ..++.++
T Consensus 83 ---------------------~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 83 ---------------------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp ---------------------HHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred ---------------------HHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 1211 233689999997542 1111110000 0 0124567
Q ss_pred EEEecchhhh-hhcCC-CcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhc
Q 042806 286 LLTARSLDVL-SRKMD-SQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVARALG 358 (390)
Q Consensus 286 ivTtr~~~v~-~~~~~-~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~~L~ 358 (390)
|.||...... ..... ....+++.+++.++..+++.+.+....... .++....+++.|+|.|-.+..+...+.
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI-TEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7777643221 11111 235899999999999999988774221111 245678899999999998887766553
No 21
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.93 E-value=2.3e-09 Score=91.12 Aligned_cols=152 Identities=13% Similarity=0.136 Sum_probs=86.5
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCC-----CCeEEEEEeCCCCCHHHHHHHHH
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKL-----FDQVIFVEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~-----f~~~~wv~v~~~~~~~~l~~~i~ 227 (390)
...++||+.++..+.+.+.....+.+.|+|++|+|||+|++.+++....... ....+++.++ .+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---- 90 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG------ALV---- 90 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH------HHH----
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHH------HHh----
Confidence 4568999999999999998877778899999999999999999998643210 1223444321 111
Q ss_pred HHhCCCCCCCCchHHHHHHHHHH-hCCCeEEEEEeCCCCCc---------c-cccccCCCCCCCCCcEEEEEecchhhh-
Q 042806 228 DKLGLTLHEESDSGRARSLRNRL-KKEKTILVILDNIWGNL---------D-FQAVGIPHGDDRKGCKVLLTARSLDVL- 295 (390)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l-~~~~~~LlVlDdv~~~~---------~-~~~l~~~l~~~~~~s~IivTtr~~~v~- 295 (390)
...............+.+.+ ...++.+|+|||++... . ...+...+ ...+..+|+||......
T Consensus 91 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~--~~~~~~~i~~~~~~~~~~ 165 (195)
T 1jbk_A 91 ---AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDEYRQ 165 (195)
T ss_dssp ---TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH--HTTSCCEEEEECHHHHHH
T ss_pred ---ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh--ccCCeEEEEeCCHHHHHH
Confidence 00000000011122222322 23445899999996531 1 11121111 12345577777654321
Q ss_pred -----hhcCCCcceEecCCCCHHHHHHHH
Q 042806 296 -----SRKMDSQQNFSVGVLKEDEAWSLF 319 (390)
Q Consensus 296 -----~~~~~~~~~~~l~~L~~~ea~~lf 319 (390)
.....-...+++.+++.++..+++
T Consensus 166 ~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 166 YIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 111122236889999998877654
No 22
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=1.3e-08 Score=95.60 Aligned_cols=195 Identities=12% Similarity=0.090 Sum_probs=111.9
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCC-CeEEEEEeCCCCCHHHHHHHHHHHhC
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLF-DQVIFVEVSKIQDIRKIQGEIADKLG 231 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f-~~~~wv~v~~~~~~~~l~~~i~~~l~ 231 (390)
...++|++..++.+..++..+..+.+.|+|++|+||||+|+.+.+.......+ .....++.+.......+ ......+.
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 114 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNFA 114 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHHh
Confidence 45789999999999999987765558999999999999999999886421111 12333444332233222 22222111
Q ss_pred CC-CCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc--ccccccCCCCCCCCCcEEEEEecchh-hhhhcCCCcceEec
Q 042806 232 LT-LHEESDSGRARSLRNRLKKEKTILVILDNIWGNL--DFQAVGIPHGDDRKGCKVLLTARSLD-VLSRKMDSQQNFSV 307 (390)
Q Consensus 232 ~~-~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~IivTtr~~~-v~~~~~~~~~~~~l 307 (390)
.. ....... ........++-+|++|+++... ....+...+.......++|++|.... +......-...+++
T Consensus 115 ~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~ 189 (353)
T 1sxj_D 115 RLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRF 189 (353)
T ss_dssp HSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEEC
T ss_pred hhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEe
Confidence 10 0000000 0011112233699999986542 22233222222234567777775432 21111112248899
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042806 308 GVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 308 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
.+++.++...++.+.+......- .++....|++.++|.|-.+..+.
T Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~i-~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 190 KALDASNAIDRLRFISEQENVKC-DDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHTSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999988764221111 24567899999999998755443
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.82 E-value=2.8e-08 Score=90.47 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=103.9
Q ss_pred CcccccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 042806 152 DYEACESRMSTLNDILDALKN-------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQD 218 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 218 (390)
....++|.+..++.|.+.+.. ...+-+.|+|++|+|||+||+.+++..... .+.+..+....
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~~~ 89 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSELVK 89 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGGCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHHHH
Confidence 355788999888888777632 345678999999999999999999886432 23333322111
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc----------------ccccccCCCC--CCC
Q 042806 219 IRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL----------------DFQAVGIPHG--DDR 280 (390)
Q Consensus 219 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------------~~~~l~~~l~--~~~ 280 (390)
. . ..........+........+.+|+||+++... .+..+...+. ...
T Consensus 90 ~--------------~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 90 K--------------F-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp C--------------S-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred h--------------c-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 0 0 00111223333444444456899999996420 0111111110 123
Q ss_pred CCcEEEEEecchhhhhh-c-C--CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC-ChHHHHHH
Q 042806 281 KGCKVLLTARSLDVLSR-K-M--DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAG-LPVSIVTV 353 (390)
Q Consensus 281 ~~s~IivTtr~~~v~~~-~-~--~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G-lPLai~~l 353 (390)
.+..||.||........ . . .....+.+.+.+.++..++|...+.......+. ....++..+.| .|-.|..+
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~--~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV--NLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHHCTTCCHHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC--CHHHHHHHcCCCCHHHHHHH
Confidence 45677888875432111 1 1 223479999999999999999887632221111 13578888877 45455443
No 24
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.80 E-value=5.4e-09 Score=92.35 Aligned_cols=173 Identities=12% Similarity=0.068 Sum_probs=101.9
Q ss_pred ccccch---hHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042806 154 EACESR---MSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL 230 (390)
Q Consensus 154 ~~~~gR---~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l 230 (390)
+.|+++ ...+..+..++..+..+.+.|+|++|+||||||+.+++..... .....|+.++..... +
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~---- 95 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------S---- 95 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------C----
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------H----
Confidence 455653 3555666666665567889999999999999999999987653 234566665432110 0
Q ss_pred CCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcc----cccccCCCCC-CCCC-cEEEEEecchhhh-----hh--
Q 042806 231 GLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNLD----FQAVGIPHGD-DRKG-CKVLLTARSLDVL-----SR-- 297 (390)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----~~~l~~~l~~-~~~~-s~IivTtr~~~v~-----~~-- 297 (390)
.. ..+.+. ++.+||+||++.... .+.+...+.. ...+ .++|+||+...-. ..
T Consensus 96 ---------~~----~~~~~~--~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~ 160 (242)
T 3bos_A 96 ---------TA----LLEGLE--QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLV 160 (242)
T ss_dssp ---------GG----GGTTGG--GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHH
T ss_pred ---------HH----HHHhcc--CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhh
Confidence 00 001111 236999999965421 1222211100 0112 2477777642210 00
Q ss_pred -cCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042806 298 -KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 298 -~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
.......+++.+++.++..+++...+...... -.++....+++.++|.+-.+..+.
T Consensus 161 ~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 161 SRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ-LPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC-CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHccCCHHHHHHHH
Confidence 11122689999999999999998877411111 124567889999999998776554
No 25
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.79 E-value=3.2e-08 Score=97.86 Aligned_cols=191 Identities=12% Similarity=0.094 Sum_probs=108.5
Q ss_pred cCcccccchhHHHHHHHHHhcC-----------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 042806 151 KDYEACESRMSTLNDILDALKN-----------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEV 213 (390)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~-----------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v 213 (390)
.....++|++..++.+.+++.. +..+.+.|+|++|+||||+|+.+++... + ..+.+++
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~ 110 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNA 110 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeC
Confidence 3456799999999999999875 1347899999999999999999999873 2 2444555
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHH-HhCCCeEEEEEeCCCCCcc-----cccccCCCCCCCCCcEEEE
Q 042806 214 SKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNR-LKKEKTILVILDNIWGNLD-----FQAVGIPHGDDRKGCKVLL 287 (390)
Q Consensus 214 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~~~~~LlVlDdv~~~~~-----~~~l~~~l~~~~~~s~Iiv 287 (390)
+...... ++...+........... ......+. ...+++.+|++|+++.... +..+...+. ..+..||+
T Consensus 111 s~~~~~~-~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iIl 184 (516)
T 1sxj_A 111 SDVRSKT-LLNAGVKNALDNMSVVG---YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLIL 184 (516)
T ss_dssp TSCCCHH-HHHHTGGGGTTBCCSTT---TTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEE
T ss_pred CCcchHH-HHHHHHHHHhccccHHH---HHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEEE
Confidence 5444432 22222221111100000 00000000 1124558999999965421 122222211 12334555
Q ss_pred Eecchhh--hhhcCCCcceEecCCCCHHHHHHHHHHhhC--CCCCCCchHHHHHHHHHHcCC-ChHHHHHHHH
Q 042806 288 TARSLDV--LSRKMDSQQNFSVGVLKEDEAWSLFKKMAG--DYIEGSEFKWVAKDVARECAG-LPVSIVTVAR 355 (390)
Q Consensus 288 Ttr~~~v--~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~--~~~~~~~~~~~~~~i~~~~~G-lPLai~~l~~ 355 (390)
++..... ..........+++.+++.++..+++...+. +...++ +....|++.++| ++.++..+..
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHTH
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHHH
Confidence 5554221 111223345899999999999999987764 211222 246789999999 5555665543
No 26
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.75 E-value=2.7e-07 Score=82.65 Aligned_cols=181 Identities=16% Similarity=0.180 Sum_probs=98.1
Q ss_pred ccccchhHHHHHHHHH---hcC---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHH
Q 042806 154 EACESRMSTLNDILDA---LKN---------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRK 221 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~---L~~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~ 221 (390)
..++|.+..+..+.+. +.. ...+.+.|+|++|+|||++|+.+++..... .+.+..+...+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP-----FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEechHHHHhh--
Confidence 3567776665555443 322 234568899999999999999999976422 344444332110
Q ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc-------------c----cccccCCCC--CCCCC
Q 042806 222 IQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL-------------D----FQAVGIPHG--DDRKG 282 (390)
Q Consensus 222 l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~-------------~----~~~l~~~l~--~~~~~ 282 (390)
.. .........+........+.+|+||+++... . +..+...+. ....+
T Consensus 79 ------------~~-~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 ------------IG-GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp ------------ST-THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred ------------cc-ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 00 0011122233333333445999999997531 0 111111111 12235
Q ss_pred cEEEEEecchhhhh-hcC---CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChH-HHHHHH
Q 042806 283 CKVLLTARSLDVLS-RKM---DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPV-SIVTVA 354 (390)
Q Consensus 283 s~IivTtr~~~v~~-~~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPL-ai~~l~ 354 (390)
..||.||....... ... .....+.+.+.+.++-.+++.+.+...............+++.+.|.+- .|..+.
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 66777776543211 111 1235788999999999999988775222222223334788999988754 555443
No 27
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.75 E-value=1.1e-07 Score=92.05 Aligned_cols=179 Identities=14% Similarity=0.153 Sum_probs=106.5
Q ss_pred cCcccccchhHHH---HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHH
Q 042806 151 KDYEACESRMSTL---NDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI-QDIRKIQGEI 226 (390)
Q Consensus 151 ~~~~~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~l~~~i 226 (390)
.....++|.+..+ ..|...+..+..+.+.|+|++|+||||||+.+.+..... ++.++.. ....++ +.+
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~-------f~~l~a~~~~~~~i-r~~ 94 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD-------VERISAVTSGVKEI-REA 94 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-------EEEEETTTCCHHHH-HHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-------eEEEEeccCCHHHH-HHH
Confidence 3456788988877 677777777777889999999999999999999886432 2222221 122221 111
Q ss_pred HHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEE-Eecchh--hhhhcCCC
Q 042806 227 ADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLL-TARSLD--VLSRKMDS 301 (390)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~Iiv-Ttr~~~--v~~~~~~~ 301 (390)
+. ........+++.+|+||+++.. ...+.+...+.. ....+|. ||.+.. +......-
T Consensus 95 ~~----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 95 IE----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp HH----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTT
T ss_pred HH----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCc
Confidence 11 1111111234589999999755 223333333322 2234444 444432 11112233
Q ss_pred cceEecCCCCHHHHHHHHHHhhCCC------CCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042806 302 QQNFSVGVLKEDEAWSLFKKMAGDY------IEGSEFKWVAKDVARECAGLPVSIVTVAR 355 (390)
Q Consensus 302 ~~~~~l~~L~~~ea~~lf~~~~~~~------~~~~~~~~~~~~i~~~~~GlPLai~~l~~ 355 (390)
...+.+.+++.++...++.+.+... ....-.++....|++.++|.+-.+..+..
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 4588999999999999998876421 11112245678899999998876665543
No 28
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.73 E-value=2e-07 Score=84.25 Aligned_cols=180 Identities=14% Similarity=0.123 Sum_probs=96.1
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh
Q 042806 172 NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLK 251 (390)
Q Consensus 172 ~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 251 (390)
....+.+.|+|++|+|||+||+.+++.... . .+.+..+... ++. ...........+.....
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~----~-~~~i~~~~~~------------~g~--~~~~~~~~~~~~~~~~~ 121 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNF----P-FIKICSPDKM------------IGF--SETAKCQAMKKIFDDAY 121 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTC----S-EEEEECGGGC------------TTC--CHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCC----C-EEEEeCHHHh------------cCC--chHHHHHHHHHHHHHHH
Confidence 345678899999999999999999997532 2 2222222110 000 00000011222333333
Q ss_pred CCCeEEEEEeCCCCC-----------c-ccccccCCCC---CCCCCcEEEEEecchhhhhh--cCC-CcceEecCCCCH-
Q 042806 252 KEKTILVILDNIWGN-----------L-DFQAVGIPHG---DDRKGCKVLLTARSLDVLSR--KMD-SQQNFSVGVLKE- 312 (390)
Q Consensus 252 ~~~~~LlVlDdv~~~-----------~-~~~~l~~~l~---~~~~~s~IivTtr~~~v~~~--~~~-~~~~~~l~~L~~- 312 (390)
..++.+|+||+++.. . .++.+...+. .......||.||........ ... ....+++.+++.
T Consensus 122 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r 201 (272)
T 1d2n_A 122 KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATG 201 (272)
T ss_dssp TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEH
T ss_pred hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHH
Confidence 345689999998532 1 1122222221 12234456777776543221 111 245788999988
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC------ChHHHHHHHHHhcCCCCCCCcccchhHHHHHhhhh
Q 042806 313 DEAWSLFKKMAGDYIEGSEFKWVAKDVARECAG------LPVSIVTVARALGTRDYLNGRTHWNSWGGLLQLTL 380 (390)
Q Consensus 313 ~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G------lPLai~~l~~~L~~~~~~~~~~~w~~~~~~l~~~~ 380 (390)
++...++.+... . ..+....+++.+.| ++-++..+-......+ ...++.+...|+...
T Consensus 202 ~~i~~i~~~~~~--~----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~----~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 202 EQLLEALELLGN--F----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDP----EYRVRKFLALLREEG 265 (272)
T ss_dssp HHHHHHHHHHTC--S----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCG----GGHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCC--C----CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhch----HHHHHHHHHHHHHcC
Confidence 667777665321 1 13456788999887 5555555544433222 456666666665543
No 29
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.70 E-value=4.3e-07 Score=85.44 Aligned_cols=182 Identities=9% Similarity=0.051 Sum_probs=104.6
Q ss_pred cccccchhHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 042806 153 YEACESRMSTLNDILDALK------------NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIR 220 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 220 (390)
...++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++.... ..+.++.+.....
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTSK- 156 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCCS-
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhcc-
Confidence 4568899888888877663 124567899999999999999999887632 2344444322110
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc-------------ccccccCCCC----CCCCCc
Q 042806 221 KIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL-------------DFQAVGIPHG----DDRKGC 283 (390)
Q Consensus 221 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~-------------~~~~l~~~l~----~~~~~s 283 (390)
. ..........+.......++.+|+||+++... ....+...+. ....+.
T Consensus 157 -------------~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 157 -------------W-VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -------------S-TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -------------c-cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 0 00011122333333333455899999994320 0111211111 122355
Q ss_pred EEEEEecchh-hhhh-cCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC-ChHHHHHHHH
Q 042806 284 KVLLTARSLD-VLSR-KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAG-LPVSIVTVAR 355 (390)
Q Consensus 284 ~IivTtr~~~-v~~~-~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G-lPLai~~l~~ 355 (390)
.||.||.... +... .......+.+...+.++..+++...+......- .++....|++.+.| .|-.|..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l-~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL-SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc-cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6666776532 2111 112335788999999999999988774221111 13456789999988 5666666543
No 30
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.69 E-value=9.2e-08 Score=88.76 Aligned_cols=182 Identities=10% Similarity=0.072 Sum_probs=103.9
Q ss_pred cCcccccchhHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042806 151 KDYEACESRMSTLNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADK 229 (390)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~ 229 (390)
...+.++|++..+..+.+++..+. ..++.++|++|+|||++|+.+++.... ..+.++.+.. .... +...+..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~-~~~~-i~~~~~~ 95 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDC-KIDF-VRGPLTN 95 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTC-CHHH-HHTHHHH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEccccc-CHHH-HHHHHHH
Confidence 345678999999999999998765 467788899999999999999987642 2445554432 2222 2222211
Q ss_pred hCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc---ccccccCCCCCCCCCcEEEEEecchhh-hhhcCCCcceE
Q 042806 230 LGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL---DFQAVGIPHGDDRKGCKVLLTARSLDV-LSRKMDSQQNF 305 (390)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---~~~~l~~~l~~~~~~s~IivTtr~~~v-~~~~~~~~~~~ 305 (390)
+..... ..+++.++++|+++... ..+.+...+.....+.++|+||....- ......-...+
T Consensus 96 ~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i 160 (324)
T 3u61_B 96 FASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVI 160 (324)
T ss_dssp HHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEE
T ss_pred HHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEE
Confidence 110000 01245899999997654 222232222112245678888876431 11111112479
Q ss_pred ecCCCCHHHHHHHHH-------HhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042806 306 SVGVLKEDEAWSLFK-------KMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 306 ~l~~L~~~ea~~lf~-------~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
++.+++.++-.+++. ..+..........+....|++.++|.+-.+....
T Consensus 161 ~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L 216 (324)
T 3u61_B 161 TFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGEL 216 (324)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999888443332 2222111111112567789999988776544433
No 31
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.69 E-value=1.4e-06 Score=80.68 Aligned_cols=182 Identities=15% Similarity=0.153 Sum_probs=103.4
Q ss_pred cccccchhHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 042806 153 YEACESRMSTLNDILDALK------------NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIR 220 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 220 (390)
...++|-+..++.|.+.+. ....+-+.|+|++|+|||+||+.+++..... ..+.+..+.-.+
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDLVS-- 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC----EEEEEECCSSCC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC----cEEEEEhHHHHh--
Confidence 4567787777776666542 1234678999999999999999999986211 123333332111
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcc-------------cccccC---CCCCCCCCcE
Q 042806 221 KIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNLD-------------FQAVGI---PHGDDRKGCK 284 (390)
Q Consensus 221 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~---~l~~~~~~s~ 284 (390)
... .........+.......++.+|+||+++.... ...+.. .+.....+..
T Consensus 85 ------------~~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 85 ------------KWL-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp ------------SSC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred ------------hhh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 000 11223344444444445569999999974310 011111 1111234556
Q ss_pred EEEEecchhhhh-h-cCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCC-hHHHHHHH
Q 042806 285 VLLTARSLDVLS-R-KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGL-PVSIVTVA 354 (390)
Q Consensus 285 IivTtr~~~v~~-~-~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl-PLai~~l~ 354 (390)
||.||....... . .......+.+...+.++-.++|...+....... .+.....|++.+.|. +-.|..+.
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 666665432211 0 112335788999999999999998875322211 134567899999887 44455443
No 32
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=1e-07 Score=89.57 Aligned_cols=198 Identities=13% Similarity=0.082 Sum_probs=106.4
Q ss_pred CcccccchhHHHHHHHHHh-cCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCe-------------------
Q 042806 152 DYEACESRMSTLNDILDAL-KNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKL----FDQ------------------- 207 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L-~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----f~~------------------- 207 (390)
....++|++..++.+.+++ ..++.+.+.|+|++|+||||+++.+......... ++.
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 3457899999999999988 6655444899999999999999999885421110 110
Q ss_pred -EEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc--ccccccCCCCCCCCCc
Q 042806 208 -VIFVEVSKIQ-DIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL--DFQAVGIPHGDDRKGC 283 (390)
Q Consensus 208 -~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s 283 (390)
.+.+..+... ......+.++..+......... . .+.. +. .++-++++|++...+ ..+.+...+.....++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~-~ls~-l~-~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ---D-SKDG-LA-HRYKCVIINEANSLTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTE
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhcccccc---c-cccc-cC-CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCC
Confidence 1111111100 0000122222222111000000 0 0000 11 234699999997642 1222322221123467
Q ss_pred EEEEEecch-hhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042806 284 KVLLTARSL-DVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVAR 355 (390)
Q Consensus 284 ~IivTtr~~-~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~~ 355 (390)
.+|++|... .+......-...+++.+++.++..+++.+.+......-+.++....|++.++|.+-.+..+..
T Consensus 166 ~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 166 RLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp EEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred EEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 788887753 222212223368999999999999999887641111101023567899999999987766543
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.67 E-value=1.8e-07 Score=87.32 Aligned_cols=173 Identities=13% Similarity=0.100 Sum_probs=103.0
Q ss_pred CcccccchhHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 042806 152 DYEACESRMSTLNDILDALKN-----PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEI 226 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i 226 (390)
....++|++..+..+..++.. ...+.+.|+|++|+|||+||+.+++..... .+.++.+......++
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~~~~---- 97 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN-----IKTTAAPMIEKSGDL---- 97 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC-----EEEEEGGGCCSHHHH----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEecchhccchhHH----
Confidence 456799999988888887753 345578899999999999999998875422 233333322211111
Q ss_pred HHHhCCCCCCCCchHHHHHHHHHHh-CCCeEEEEEeCCCCCc--ccccccCCC------------------CCCCCCcEE
Q 042806 227 ADKLGLTLHEESDSGRARSLRNRLK-KEKTILVILDNIWGNL--DFQAVGIPH------------------GDDRKGCKV 285 (390)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~~--~~~~l~~~l------------------~~~~~~s~I 285 (390)
...+. ..+..+|+||+++... ....+...+ ....++..+
T Consensus 98 --------------------~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 98 --------------------AAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp --------------------HHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred --------------------HHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 11111 1233788999987541 111111100 001123567
Q ss_pred EEEecchhhh-hh-cCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042806 286 LLTARSLDVL-SR-KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 286 ivTtr~~~v~-~~-~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
|.+|...... .. .......+++.+++.++...++.+.+..... .-.++....|++.+.|.|-.+..+.
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 7776653221 11 1122368999999999999999887742111 1224567789999999996655443
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.64 E-value=4.4e-08 Score=90.23 Aligned_cols=154 Identities=13% Similarity=0.079 Sum_probs=85.3
Q ss_pred cccchhHHHHHHHHHhc---------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 155 ACESRMSTLNDILDALK---------------NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~---------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
.++|.+..++.|.+.+. ......+.|+|++|+|||+||+.+++............++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 46777776666655432 233456889999999999999999888755332222223333311
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC-----------cccccccCCCCCCCCCcEEEEE
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN-----------LDFQAVGIPHGDDRKGCKVLLT 288 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~s~IivT 288 (390)
+ +...... .. ...+...+...++.+|+||+++.. .....+...+.....+..||+|
T Consensus 109 -~--------l~~~~~g-~~---~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 -D--------LVGQYIG-HT---APKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp -G--------TCCSSTT-CH---HHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred -H--------hhhhccc-cc---HHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 0 0000000 11 111222222112369999999733 1223333333233456678888
Q ss_pred ecchhhhh------h-cCCCcceEecCCCCHHHHHHHHHHhhC
Q 042806 289 ARSLDVLS------R-KMDSQQNFSVGVLKEDEAWSLFKKMAG 324 (390)
Q Consensus 289 tr~~~v~~------~-~~~~~~~~~l~~L~~~ea~~lf~~~~~ 324 (390)
|....... . .......+++.+++.++..+++.+.+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 86432100 0 001226899999999999999988774
No 35
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.63 E-value=7.4e-07 Score=82.59 Aligned_cols=183 Identities=16% Similarity=0.139 Sum_probs=106.3
Q ss_pred cCcccccchhHHHHHHHHHhc----------C--CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 042806 151 KDYEACESRMSTLNDILDALK----------N--PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQD 218 (390)
Q Consensus 151 ~~~~~~~gR~~~~~~l~~~L~----------~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 218 (390)
.....++|.+..++.|.+.+. . ...+-+.|+|++|+|||+||+.+++..... .+.++.
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~----- 84 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSS----- 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEH-----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEch-----
Confidence 335678899888888887762 1 124568899999999999999999886432 233322
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcc-------------cccccC---CCCCCCCC
Q 042806 219 IRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNLD-------------FQAVGI---PHGDDRKG 282 (390)
Q Consensus 219 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~---~l~~~~~~ 282 (390)
.++... .. .........+.......++.+|+||+++.... ...+.. .+.....+
T Consensus 85 -~~l~~~--------~~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 85 -SDLVSK--------WM-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp -HHHHTT--------TG-GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred -HHHhhc--------cc-chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 111110 00 01122334444444445568999999964311 111111 11122345
Q ss_pred cEEEEEecchhhhhh--cCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC-ChHHHHHHH
Q 042806 283 CKVLLTARSLDVLSR--KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAG-LPVSIVTVA 354 (390)
Q Consensus 283 s~IivTtr~~~v~~~--~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G-lPLai~~l~ 354 (390)
..||.||........ .......+.+...+.++-.++|...+........ +.....|++.+.| .+-.|..+.
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT-KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC-HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 667767765322110 0122357888999999999999998864322211 3356788899987 454454443
No 36
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.62 E-value=1.6e-06 Score=82.48 Aligned_cols=182 Identities=14% Similarity=0.104 Sum_probs=103.4
Q ss_pred CcccccchhHHHHHHHHHhcC------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 152 DYEACESRMSTLNDILDALKN------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
....++|.+..+..|.+.+.. ...+-+.|+|++|+|||+||+.+++.... ..+.++.+....
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~~- 186 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLTS- 186 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC---
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhhc-
Confidence 356789999998888887721 22467899999999999999999887532 123333322211
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc-------------ccccccCCC---C-CCCCC
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL-------------DFQAVGIPH---G-DDRKG 282 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~-------------~~~~l~~~l---~-~~~~~ 282 (390)
... .........+........+.+|+||+++... ....+...+ . .....
T Consensus 187 -~~~-------------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 187 -KYV-------------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred -ccc-------------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 000 0111223344444434445899999996430 001111111 0 11234
Q ss_pred cEEEEEecchhhh-hh-cCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChH-HHHHHH
Q 042806 283 CKVLLTARSLDVL-SR-KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPV-SIVTVA 354 (390)
Q Consensus 283 s~IivTtr~~~v~-~~-~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPL-ai~~l~ 354 (390)
..||.||...... .. .......+.+...+.++-.+++...+....... .++....|++.+.|..- .|..+.
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l-~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL-TQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5666667653221 11 112234688999999999999998875322222 23456789999988554 665554
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.61 E-value=5.4e-07 Score=84.97 Aligned_cols=196 Identities=10% Similarity=0.028 Sum_probs=104.5
Q ss_pred cccccchhHHHHH---HHHHhcCCCc--cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe----CCCCCHHHHH
Q 042806 153 YEACESRMSTLND---ILDALKNPDV--NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEV----SKIQDIRKIQ 223 (390)
Q Consensus 153 ~~~~~gR~~~~~~---l~~~L~~~~~--~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v----~~~~~~~~l~ 223 (390)
...++|++..+.. +.+.+..+.. +.+.|+|++|+|||+||+.+.+....... .+.+.. +......+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP---FTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC---EEEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC---cccccchhhhhcccchhHHH
Confidence 4578999887655 5555555443 58999999999999999999998753211 122222 1223444444
Q ss_pred HHHHHHhCC---------------------CC--------C--CCCchHHHHHHHHH----HhCCC----eEEEEEeCCC
Q 042806 224 GEIADKLGL---------------------TL--------H--EESDSGRARSLRNR----LKKEK----TILVILDNIW 264 (390)
Q Consensus 224 ~~i~~~l~~---------------------~~--------~--~~~~~~~~~~l~~~----l~~~~----~~LlVlDdv~ 264 (390)
...+..... .. . ..........+... ...++ +.+|+||+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 444333110 00 0 00011111111111 11222 3599999997
Q ss_pred CC--cccccccCCCCCCCCCcEEEEEecc-------------hhhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCC
Q 042806 265 GN--LDFQAVGIPHGDDRKGCKVLLTARS-------------LDVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEG 329 (390)
Q Consensus 265 ~~--~~~~~l~~~l~~~~~~s~IivTtr~-------------~~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 329 (390)
.. .....+...+...... .++++|.. ..+......-...+++.+++.++..+++...+......
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 54 2223333223222222 34444431 11111111222458999999999999999877521111
Q ss_pred CchHHHHHHHHHHcC-CChHHHHHH
Q 042806 330 SEFKWVAKDVARECA-GLPVSIVTV 353 (390)
Q Consensus 330 ~~~~~~~~~i~~~~~-GlPLai~~l 353 (390)
-.++....|++.+. |.|-.+..+
T Consensus 279 -~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 279 -MSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp -BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred -CCHHHHHHHHHHhcCCCHHHHHHH
Confidence 22456788999997 777665544
No 38
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=4e-07 Score=85.10 Aligned_cols=185 Identities=13% Similarity=0.076 Sum_probs=105.6
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC-eEEEEEeCCCCCHHHHHHHHHHHhC
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFD-QVIFVEVSKIQDIRKIQGEIADKLG 231 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~l~~~i~~~l~ 231 (390)
...++|.+..++.|...+..++.+.+.++|++|+||||+++.++....... +. ....++.+.......+. .....+.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~~~~ir-~~i~~~~ 101 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN-YSNMVLELNASDDRGIDVVR-NQIKDFA 101 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS-HHHHEEEECTTSCCSHHHHH-THHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-ccceEEEEcCcccccHHHHH-HHHHHHH
Confidence 456788888888888888877655589999999999999999998864321 11 12223333222222221 1111111
Q ss_pred CCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecchh-hhhhcCCCcceEecC
Q 042806 232 LTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARSLD-VLSRKMDSQQNFSVG 308 (390)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~~~-v~~~~~~~~~~~~l~ 308 (390)
..... + .+.+-++|+|+++.. ...+.+...+......+++|++|.... +......-...+++.
T Consensus 102 ~~~~~-------------~-~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~ 167 (340)
T 1sxj_C 102 STRQI-------------F-SKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQ 167 (340)
T ss_dssp HBCCS-------------S-SCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred hhccc-------------C-CCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEecc
Confidence 00000 0 112378999998643 222223222211234566777765432 211112223478999
Q ss_pred CCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042806 309 VLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 309 ~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
+++.++..+.+.+.+......- .++..+.+++.++|.+--+..+.
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~~i-~~~~~~~i~~~s~G~~r~~~~~l 212 (340)
T 1sxj_C 168 PLPQEAIERRIANVLVHEKLKL-SPNAEKALIELSNGDMRRVLNVL 212 (340)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCB-CHHHHHHHHHHHTTCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999998887763211111 13467789999999988554443
No 39
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.58 E-value=5.3e-07 Score=87.21 Aligned_cols=171 Identities=16% Similarity=0.182 Sum_probs=99.9
Q ss_pred HHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHH
Q 042806 164 NDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGR 242 (390)
Q Consensus 164 ~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~ 242 (390)
..+......+. ...+.|+|++|+||||||+.+++.......-...++++. .++...+...+... .
T Consensus 118 ~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~--------~ 183 (440)
T 2z4s_A 118 HAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG--------K 183 (440)
T ss_dssp HHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH------HHHHHHHHHHHHTT--------C
T ss_pred HHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHcc--------c
Confidence 34444444433 567899999999999999999998754311112445443 33344444443221 1
Q ss_pred HHHHHHHHhCCCeEEEEEeCCCCCcc----cccccCCCCC-CCCCcEEEEEecchh---------hhhhcCCCcceEecC
Q 042806 243 ARSLRNRLKKEKTILVILDNIWGNLD----FQAVGIPHGD-DRKGCKVLLTARSLD---------VLSRKMDSQQNFSVG 308 (390)
Q Consensus 243 ~~~l~~~l~~~~~~LlVlDdv~~~~~----~~~l~~~l~~-~~~~s~IivTtr~~~---------v~~~~~~~~~~~~l~ 308 (390)
...+...+.. ++-+|+|||++.... .+.+...+.. ...|..||+||.... +.. .+..+..+.+.
T Consensus 184 ~~~~~~~~~~-~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s-R~~~g~~i~l~ 261 (440)
T 2z4s_A 184 LNEFREKYRK-KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS-RFQMGLVAKLE 261 (440)
T ss_dssp HHHHHHHHTT-TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH-HHHSSBCCBCC
T ss_pred HHHHHHHhcC-CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh-hccCCeEEEeC
Confidence 1233344431 336999999975432 1222222110 134677888887621 111 12234688999
Q ss_pred CCCHHHHHHHHHHhhC--CCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 309 VLKEDEAWSLFKKMAG--DYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 309 ~L~~~ea~~lf~~~~~--~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
+++.++..+++.+.+. +...++ ++...|++.++|.+-.+..+
T Consensus 262 ~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 262 PPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHH
Confidence 9999999999988774 211222 34678889999988765543
No 40
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.58 E-value=2.8e-06 Score=82.24 Aligned_cols=181 Identities=16% Similarity=0.178 Sum_probs=103.3
Q ss_pred cccccchhHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 042806 153 YEACESRMSTLNDILDALK------------NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIR 220 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 220 (390)
...++|.+..+..|.+.+. ....+-+.|+|++|+|||+||+.+++.... ..++.++..
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~------~~~~~v~~~---- 202 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSISSS---- 202 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS------SEEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC------CCEEEEeHH----
Confidence 4568888888888877652 123467899999999999999999998621 123334332
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcc-------------cccccCCCCC---CCCCcE
Q 042806 221 KIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNLD-------------FQAVGIPHGD---DRKGCK 284 (390)
Q Consensus 221 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~l~~---~~~~s~ 284 (390)
++.... .+. ....+..+........+.+|+||+++.... ...+...+.. ...+..
T Consensus 203 ~l~~~~---~g~------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 203 DLVSKW---LGE------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred HHHhhh---cch------HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 111110 110 111233444444444569999999975410 1112222211 234566
Q ss_pred EEEEecchhhhh-h-cCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCC-hHHHHHH
Q 042806 285 VLLTARSLDVLS-R-KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGL-PVSIVTV 353 (390)
Q Consensus 285 IivTtr~~~v~~-~-~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl-PLai~~l 353 (390)
||.||....... . .......+.+...+.++-..+|..++....... .+.....|++.+.|. +-.|..+
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHH
Confidence 777776542211 1 112335788888899999999988875322111 134567899999884 4344443
No 41
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.57 E-value=1.2e-06 Score=81.61 Aligned_cols=171 Identities=12% Similarity=0.037 Sum_probs=102.4
Q ss_pred hhHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcC--------------------CCCeEEEEEeC---
Q 042806 159 RMSTLNDILDALKNPD-VNMLGIYGMGGIVKTTLAKEVARKAETEK--------------------LFDQVIFVEVS--- 214 (390)
Q Consensus 159 R~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~v~--- 214 (390)
.+.....+...+..++ .+.+.++|++|+|||++|+.+.+...... |++ ..++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccC
Confidence 3455677777777665 45799999999999999999998864321 122 2222221
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecch
Q 042806 215 KIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARSL 292 (390)
Q Consensus 215 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~~ 292 (390)
......+ .+.+.+.+..... .+++-++|+|+++.. ...+.+...+-.-..++.+|++|.+.
T Consensus 86 ~~~~i~~-ir~l~~~~~~~~~----------------~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 86 NTLGVDA-VREVTEKLNEHAR----------------LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SSBCHHH-HHHHHHHTTSCCT----------------TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCCHHH-HHHHHHHHhhccc----------------cCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 1112221 1222222221110 123479999999754 22333433332333456777777654
Q ss_pred -hhhhhcCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042806 293 -DVLSRKMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTV 353 (390)
Q Consensus 293 -~v~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l 353 (390)
.+......-...+++.+++.++..+++.+... . .++.+..+++.++|.|..+..+
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~---~---~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT---M---SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC---C---CHHHHHHHHHHTTTCHHHHHHT
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC---C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 33332333446899999999999999988751 1 1345678999999999766543
No 42
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.56 E-value=3.5e-06 Score=76.89 Aligned_cols=182 Identities=12% Similarity=0.086 Sum_probs=102.8
Q ss_pred CcccccchhHHHHHHHHHhcC------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 152 DYEACESRMSTLNDILDALKN------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
....++|.+..+..+.+.+.. ...+.+.|+|++|+||||+|+.+++.... ..+.++.+....
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~- 92 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTS- 92 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSS-
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhh-
Confidence 345788998888888777632 23567899999999999999999987642 123344432211
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcc-------------ccccc---CCCCCC--CC
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNLD-------------FQAVG---IPHGDD--RK 281 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~---~~l~~~--~~ 281 (390)
.. ..........+........+.+|+||++..... ...+. ..++.. +.
T Consensus 93 -------------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 93 -------------KY-VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp -------------SS-CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred -------------cc-cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 00 011122333334444344558999999964311 00011 111111 23
Q ss_pred CcEEEEEecchhhh-hh-cCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChH-HHHHHH
Q 042806 282 GCKVLLTARSLDVL-SR-KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPV-SIVTVA 354 (390)
Q Consensus 282 ~s~IivTtr~~~v~-~~-~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPL-ai~~l~ 354 (390)
+..||.||...... .. .......+.+...+.++-..++...+....... .......+++.+.|.+- .|..+.
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPL-DTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCS-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45677777653211 10 001235778888888888888887764211111 13456789999999876 554443
No 43
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.53 E-value=4.9e-07 Score=88.19 Aligned_cols=150 Identities=13% Similarity=0.161 Sum_probs=85.5
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCC---CCe--EEEEEeCCCCCHHHHHHHHH
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKL---FDQ--VIFVEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~---f~~--~~wv~v~~~~~~~~l~~~i~ 227 (390)
.++++||+.++..+++.|......-+.|+|++|+|||++|+.+++....... ... .+.++++.
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~------------ 246 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT------------ 246 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc------------
Confidence 4579999999999999997766666789999999999999999998643210 111 22222220
Q ss_pred HHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhh------hhhcCCC
Q 042806 228 DKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDV------LSRKMDS 301 (390)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v------~~~~~~~ 301 (390)
... . ........+.+.+....+.+|++| -..+....+...+. ....++|.+|..... ......-
T Consensus 247 -~~~--g---~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~R 316 (468)
T 3pxg_A 247 -KYR--G---EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERR 316 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred -ccc--c---hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHh
Confidence 000 0 001123344444444445899999 22222233433332 224566666654431 1111112
Q ss_pred cceEecCCCCHHHHHHHHHHhhC
Q 042806 302 QQNFSVGVLKEDEAWSLFKKMAG 324 (390)
Q Consensus 302 ~~~~~l~~L~~~ea~~lf~~~~~ 324 (390)
...+.+.+.+.++..+++.....
T Consensus 317 f~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 317 FQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp EEEEECCCCCHHHHHHHHHHTTT
T ss_pred CccceeCCCCHHHHHHHHHHHHH
Confidence 24799999999999999997764
No 44
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.51 E-value=4.2e-06 Score=78.59 Aligned_cols=180 Identities=17% Similarity=0.156 Sum_probs=102.5
Q ss_pred cccccchhHHHHHHHHHhcC------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 042806 153 YEACESRMSTLNDILDALKN------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIR 220 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 220 (390)
...++|.+..+..|.+.+.. ...+-+.|+|++|+|||+||+.+++..... .+.+..+
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~------ 118 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS------ 118 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH------
Confidence 45688888888888776621 123458899999999999999999987422 2223221
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcc-------------cccccCC---CCCCCCCcE
Q 042806 221 KIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNLD-------------FQAVGIP---HGDDRKGCK 284 (390)
Q Consensus 221 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~---l~~~~~~s~ 284 (390)
++... .. .........+.......++.+|+||+++.... ...+... +.....+..
T Consensus 119 ~l~~~--------~~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 119 DLVSK--------WM-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp HHHSC--------C----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred HHhhh--------hc-chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 22110 00 01122334444444444569999999974321 1111111 111234566
Q ss_pred EEEEecchhhh-hh-cCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCC-hHHHHHH
Q 042806 285 VLLTARSLDVL-SR-KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGL-PVSIVTV 353 (390)
Q Consensus 285 IivTtr~~~v~-~~-~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl-PLai~~l 353 (390)
||.||...... .. .......+.+...+.++-.++|..++........ ......|++.+.|. |-.|..+
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~-~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT-KEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC-HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 66677654211 10 1123457889999999999999988863221111 34567899999884 5444444
No 45
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.46 E-value=4.1e-06 Score=76.80 Aligned_cols=173 Identities=12% Similarity=0.179 Sum_probs=98.6
Q ss_pred cccccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 153 YEACESRMSTLNDILDALKN-------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
...++|.+..+..|.+.+.. ...+.+.|+|++|+|||+||+.+++.... -++.++ .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-------~~i~v~----~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIK----G 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-------EEEEEC----H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-------CEEEEE----h
Confidence 44678877777766665531 34567899999999999999999987642 122332 2
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc------------c----cccccCCCC--CCCC
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL------------D----FQAVGIPHG--DDRK 281 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~----~~~l~~~l~--~~~~ 281 (390)
.++.... ++.. ......+.+......+.+|+||+++... . ...+...+. ....
T Consensus 83 ~~l~~~~---~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELLTMW---FGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHHHH---HTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHHhhh---cCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 2333221 1211 1223344444444456999999996320 0 111111111 1234
Q ss_pred CcEEEEEecchhhh-hhcC---CCcceEecCCCCHHHHHHHHHHhhCCCC--CCCchHHHHHHHHHHcCCChHH
Q 042806 282 GCKVLLTARSLDVL-SRKM---DSQQNFSVGVLKEDEAWSLFKKMAGDYI--EGSEFKWVAKDVARECAGLPVS 349 (390)
Q Consensus 282 ~s~IivTtr~~~v~-~~~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~GlPLa 349 (390)
+..||.||...... .... .....+.+...+.++-.++|...+.... ...++ ..++..+.|.|-+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 56777777754322 1111 1235789999999999999988875221 12222 3566677777643
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.43 E-value=2.3e-06 Score=79.22 Aligned_cols=166 Identities=15% Similarity=0.124 Sum_probs=93.2
Q ss_pred HHHHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCch
Q 042806 163 LNDILDALKNP--DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDS 240 (390)
Q Consensus 163 ~~~l~~~L~~~--~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~ 240 (390)
...+...+..+ ....+.|+|++|+||||||+.+++..... .+ ..++++. .++...+...+...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~~~~~~~------- 87 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMVEHLKKG------- 87 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHHHHHHcC-------
Confidence 34444444443 34678899999999999999999987543 12 2445443 33333333333210
Q ss_pred HHHHHHHHHHhCCCeEEEEEeCCCCCcc---c-ccccCCCCC-CCCCcEEEEEecchhh-----hh---hcCCCcceEec
Q 042806 241 GRARSLRNRLKKEKTILVILDNIWGNLD---F-QAVGIPHGD-DRKGCKVLLTARSLDV-----LS---RKMDSQQNFSV 307 (390)
Q Consensus 241 ~~~~~l~~~l~~~~~~LlVlDdv~~~~~---~-~~l~~~l~~-~~~~s~IivTtr~~~v-----~~---~~~~~~~~~~l 307 (390)
....+...+.. +.+|+|||++.... + +.+...+.. ...+..||+||..... .. ........+++
T Consensus 88 -~~~~~~~~~~~--~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l 164 (324)
T 1l8q_A 88 -TINEFRNMYKS--VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEI 164 (324)
T ss_dssp -CHHHHHHHHHT--CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEEC
T ss_pred -cHHHHHHHhcC--CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEe
Confidence 11223333333 36999999975431 1 222222110 1235578888764211 00 11223357899
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHH
Q 042806 308 GVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVS 349 (390)
Q Consensus 308 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLa 349 (390)
.+ +.++..+++...+......- .+++...|++.+ |.+-.
T Consensus 165 ~~-~~~e~~~il~~~~~~~~~~l-~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 165 EL-DNKTRFKIIKEKLKEFNLEL-RKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CC-CHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-SSHHH
T ss_pred CC-CHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHhC-CCHHH
Confidence 99 99999999988774211111 145677888888 76654
No 47
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.42 E-value=8.1e-07 Score=93.17 Aligned_cols=157 Identities=10% Similarity=0.159 Sum_probs=87.2
Q ss_pred CcccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCC---C-C-eEEEEEeCCCCCHHHHHHHH
Q 042806 152 DYEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKL---F-D-QVIFVEVSKIQDIRKIQGEI 226 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~---f-~-~~~wv~v~~~~~~~~l~~~i 226 (390)
..++++||+.++..+++.|.....+.+.|+|++|+|||+||+.+++....... . + ..++++++....
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------- 239 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------- 239 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred CCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc--------
Confidence 35679999999999999998766666789999999999999999998743211 1 1 233333322110
Q ss_pred HHHhCCCCCCCCchHHHHHHHHHHhC-CCeEEEEEeCCCCCc-------ccc---cccCCCCCCCCCcEEEEEecchhh-
Q 042806 227 ADKLGLTLHEESDSGRARSLRNRLKK-EKTILVILDNIWGNL-------DFQ---AVGIPHGDDRKGCKVLLTARSLDV- 294 (390)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~-------~~~---~l~~~l~~~~~~s~IivTtr~~~v- 294 (390)
+.. ...........+.+.+.. .++.+|++|+++... .++ .+...+ ...+..+|.+|.....
T Consensus 240 ----g~~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l--~~~~i~~I~at~~~~~~ 312 (854)
T 1qvr_A 240 ----GAK-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL--ARGELRLIGATTLDEYR 312 (854)
T ss_dssp -----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH--HTTCCCEEEEECHHHHH
T ss_pred ----cCc-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH--hCCCeEEEEecCchHHh
Confidence 000 000112223344444433 345999999997542 011 122112 1223456655554321
Q ss_pred ----hhhcCCCcceEecCCCCHHHHHHHHHHhh
Q 042806 295 ----LSRKMDSQQNFSVGVLKEDEAWSLFKKMA 323 (390)
Q Consensus 295 ----~~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 323 (390)
......-...+.+.+++.++..++++...
T Consensus 313 ~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 313 EIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 11111222468999999999999997554
No 48
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=5.5e-06 Score=78.13 Aligned_cols=175 Identities=15% Similarity=0.174 Sum_probs=100.9
Q ss_pred CcccccchhHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 042806 152 DYEACESRMSTLNDILDALK----N---------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQD 218 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 218 (390)
...++.|-+..+++|.+.+. . ..++-+.++||+|.|||.||+.+++..... .+.+..+.-.+
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~s 220 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELVQ 220 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGSC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhhc
Confidence 35567777766666655442 1 235678899999999999999999987643 23444332211
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcc----------------cccccCCCC--CCC
Q 042806 219 IRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNLD----------------FQAVGIPHG--DDR 280 (390)
Q Consensus 219 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~ 280 (390)
. +. ......+..+........+++|.||+++.... ...+...+. ...
T Consensus 221 k--------------~v-Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 221 K--------------YI-GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp S--------------ST-THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred c--------------cc-chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 0 00 01122334444444455679999999974310 111111111 123
Q ss_pred CCcEEEEEecchhhhh-h---cCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChH
Q 042806 281 KGCKVLLTARSLDVLS-R---KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPV 348 (390)
Q Consensus 281 ~~s~IivTtr~~~v~~-~---~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPL 348 (390)
.+..||.||....... . .-.....+++...+.++-.++|+.+........+.. ...|++.|.|.-=
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd--l~~lA~~t~G~SG 355 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN--LRKVAEKMNGCSG 355 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC--HHHHHHHCCSCCH
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHCCCCCH
Confidence 4556777776543211 1 113446899999999999999988875322222211 3568888887553
No 49
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.41 E-value=5e-07 Score=76.07 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=43.2
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
...++||+.++..+.+.+.....+.+.|+|++|+|||+||+.+++....
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999998876778899999999999999999988643
No 50
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1e-05 Score=77.39 Aligned_cols=173 Identities=14% Similarity=0.165 Sum_probs=98.8
Q ss_pred cccccchhHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 153 YEACESRMSTLNDILDALK----N---------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
..++.|-+..+++|.+.+. . ..++-|.++|++|+|||+||+.+++..... .+.+..+.-.+
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~s- 281 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELVQ- 281 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhhc-
Confidence 3456777776666665432 1 346789999999999999999999987643 23333332111
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcc----------------cccccCCC--CCCCC
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNLD----------------FQAVGIPH--GDDRK 281 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l--~~~~~ 281 (390)
.+. ......+..+........+++|++|+++.... ...+...+ .....
T Consensus 282 -------------k~v-Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 -------------KYV-GEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -------------CSS-SHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -------------ccC-CHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 000 01122334444444555679999999974310 00011111 01234
Q ss_pred CcEEEEEecchhhh-hhc---CCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCh
Q 042806 282 GCKVLLTARSLDVL-SRK---MDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLP 347 (390)
Q Consensus 282 ~s~IivTtr~~~v~-~~~---~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 347 (390)
+..||.||...... ... -.....+++...+.++-.++|+.++.......+.. ...|++.|.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCCC
Confidence 45566677643321 111 12446888998899988999988875322222211 346788888764
No 51
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.31 E-value=7.1e-07 Score=75.23 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042806 159 RMSTLNDILDALKN---PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLH 235 (390)
Q Consensus 159 R~~~~~~l~~~L~~---~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~ 235 (390)
....++.+.+++.+ +....+.|+|++|+|||||++.+++.......+. ++++ +..++...+...+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchH
Confidence 34444445444433 3457899999999999999999999875332232 2232 345555555444432111
Q ss_pred CCCchHHHHHHHHHHhCCCeEEEEEeCCCC--Cccccc--ccCCCCC-CCCCcEEEEEecc
Q 042806 236 EESDSGRARSLRNRLKKEKTILVILDNIWG--NLDFQA--VGIPHGD-DRKGCKVLLTARS 291 (390)
Q Consensus 236 ~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~--~~~~~~--l~~~l~~-~~~~s~IivTtr~ 291 (390)
. .+.+.+.+ +-+|||||++. .+.|.. +...+.. ...|..+|+||..
T Consensus 92 ----~----~~~~~~~~--~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 92 ----T----KFLKTVLN--SPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp ----S----HHHHHHHT--CSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ----H----HHHHHhcC--CCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1 23333433 35999999973 233321 2111111 1246678888874
No 52
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.5e-05 Score=75.45 Aligned_cols=174 Identities=14% Similarity=0.147 Sum_probs=97.6
Q ss_pred CcccccchhHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 042806 152 DYEACESRMSTLNDILDALK----N---------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQD 218 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 218 (390)
...++.|-+..+++|.+.+. . ..++-|.++||+|.|||.||+.+++..... .+.+..+.-.+
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~l~s 254 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSELIQ 254 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGGGCC
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHHhhh
Confidence 34566777766666655432 2 235779999999999999999999987643 23333322111
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcc----------------cccccCCC--CCCC
Q 042806 219 IRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNLD----------------FQAVGIPH--GDDR 280 (390)
Q Consensus 219 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l--~~~~ 280 (390)
.+ .......+..+........+++|.+|+++.... ...+...+ ....
T Consensus 255 --------------k~-vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 255 --------------KY-LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp --------------SS-SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred --------------cc-CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 00 001122344444444455679999999863310 00111111 0223
Q ss_pred CCcEEEEEecchhhhh-hcCC---CcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCh
Q 042806 281 KGCKVLLTARSLDVLS-RKMD---SQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLP 347 (390)
Q Consensus 281 ~~s~IivTtr~~~v~~-~~~~---~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 347 (390)
.+..||.||....... .... ....+++..-+.++-.++|+.++.......+.. ...|++.+.|+-
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd--l~~LA~~T~GfS 388 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN--LETLVTTKDDLS 388 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC--HHHHHHHCCSCC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCC
Confidence 4556777776544322 1221 224688888888888899988875322222211 346778887764
No 53
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.29 E-value=9e-06 Score=84.20 Aligned_cols=156 Identities=14% Similarity=0.159 Sum_probs=92.6
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCeEEEE-EeCCCCCHHHHHHHHH
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKL----FDQVIFV-EVSKIQDIRKIQGEIA 227 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----f~~~~wv-~v~~~~~~~~l~~~i~ 227 (390)
.++++||+.++..+++.|......-+.|+|++|+|||++|+.+++....... ..+.+|. ..+..
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----------- 253 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----------- 253 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----------
Confidence 4678999999999999998766677889999999999999999988643211 1233321 11110
Q ss_pred HHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc--------c---cccccCCCCCCCCCcEEEEEecchhhhh
Q 042806 228 DKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL--------D---FQAVGIPHGDDRKGCKVLLTARSLDVLS 296 (390)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--------~---~~~l~~~l~~~~~~s~IivTtr~~~v~~ 296 (390)
+...............+.+.+...++.+|++|+++... . ...+...+ . ..+..+|.+|.......
T Consensus 254 --~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l-~-~~~~~~I~at~~~~~~~ 329 (758)
T 1r6b_X 254 --LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-S-SGKIRVIGSTTYQEFSN 329 (758)
T ss_dssp ---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS-S-SCCCEEEEEECHHHHHC
T ss_pred --hccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH-h-CCCeEEEEEeCchHHhh
Confidence 00000111222233444455544445899999997541 1 11233333 2 23456666666443210
Q ss_pred h------cCCCcceEecCCCCHHHHHHHHHHhh
Q 042806 297 R------KMDSQQNFSVGVLKEDEAWSLFKKMA 323 (390)
Q Consensus 297 ~------~~~~~~~~~l~~L~~~ea~~lf~~~~ 323 (390)
. ...-...+.+.+.+.++..+++....
T Consensus 330 ~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 0 01112368899999999988887654
No 54
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=4e-06 Score=80.21 Aligned_cols=171 Identities=13% Similarity=0.170 Sum_probs=96.9
Q ss_pred cccccchhHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 153 YEACESRMSTLNDILDALK----N---------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
..++.|-+..+++|.+.+. . ..++-|.+|||+|+|||.||+.+++..... .+.+..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~~- 253 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQLVQ- 253 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCS-
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhhhh-
Confidence 5567787777777766532 2 236778999999999999999999987642 23333332111
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC-------cc---------cccccCCCC--CCCC
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN-------LD---------FQAVGIPHG--DDRK 281 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~-------~~---------~~~l~~~l~--~~~~ 281 (390)
.+. ......+..+........+++|++|+++.. .. ...+...+. ....
T Consensus 254 -------------~~v-Gese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 254 -------------MYI-GEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp -------------SCS-SHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred -------------ccc-chHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 000 011223334444444445699999998521 00 011111111 1233
Q ss_pred CcEEEEEecchhhhh-hcC---CCcceEecCCCCHHHHHHHHHHhhCCC--CCCCchHHHHHHHHHHcCCCh
Q 042806 282 GCKVLLTARSLDVLS-RKM---DSQQNFSVGVLKEDEAWSLFKKMAGDY--IEGSEFKWVAKDVARECAGLP 347 (390)
Q Consensus 282 ~s~IivTtr~~~v~~-~~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~--~~~~~~~~~~~~i~~~~~GlP 347 (390)
+..||.||....... ... .....+++...+.++-.++|+.++... ....+ ...|++.|.|+-
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 456666776543321 111 123578888888888888887766421 12223 346788887754
No 55
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.28 E-value=3.8e-06 Score=87.02 Aligned_cols=152 Identities=12% Similarity=0.157 Sum_probs=86.1
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcC---CCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEK---LFDQVIFVEVSKIQDIRKIQGEIADK 229 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~---~f~~~~wv~v~~~~~~~~l~~~i~~~ 229 (390)
.++++||+.++..++..|......-+.++|++|+|||++|+.+.+...... ......++.++.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------------- 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------------- 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--------------
Confidence 467999999999999999876666688999999999999999999863211 011111121111
Q ss_pred hCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhh------hhhcCCCcc
Q 042806 230 LGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDV------LSRKMDSQQ 303 (390)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v------~~~~~~~~~ 303 (390)
+..... ........+.+.+....+.+|++|. .......+...+ . ....++|.||..... ......-..
T Consensus 245 -g~~~~G-~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l-~-~~~v~~I~at~~~~~~~~~~~d~al~rRf~ 318 (758)
T 3pxi_A 245 -GTKYRG-EFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSL-A-RGELQCIGATTLDEYRKYIEKDAALERRFQ 318 (758)
T ss_dssp ----------CTTHHHHHHHHHTCCCCEEEECC----------CCCT-T-SSSCEEEEECCTTTTHHHHTTCSHHHHSEE
T ss_pred -cccccc-hHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHH-h-cCCEEEEeCCChHHHHHHhhccHHHHhhCc
Confidence 000000 1111233344444444558999992 222222333333 2 334566766665431 010111124
Q ss_pred eEecCCCCHHHHHHHHHHhhC
Q 042806 304 NFSVGVLKEDEAWSLFKKMAG 324 (390)
Q Consensus 304 ~~~l~~L~~~ea~~lf~~~~~ 324 (390)
.+.+.+.+.++..+++.....
T Consensus 319 ~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 319 PIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp EEECCCCCHHHHHHHHHHTTT
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 799999999999999997664
No 56
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=1.6e-05 Score=76.12 Aligned_cols=172 Identities=16% Similarity=0.227 Sum_probs=98.3
Q ss_pred cccccchhHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 153 YEACESRMSTLNDILDALK----N---------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
..++.|-+..+++|.+.+. . ..++-|.+|||+|+|||+||+.+++..... .+.+..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc-
Confidence 4566777666666555432 2 235779999999999999999999987643 33444333211
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc--------c--------cccccCCCC--CCCC
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL--------D--------FQAVGIPHG--DDRK 281 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--------~--------~~~l~~~l~--~~~~ 281 (390)
.+. ......+..+........+++|.+|+++... . +..+...+. ....
T Consensus 254 -------------k~~-Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 -------------KYI-GESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp -------------SSS-SHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred -------------ccc-hHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 000 0112233444444445567999999997431 0 111111111 2234
Q ss_pred CcEEEEEecchhhhh-hcCC---CcceEecCCCCHHHHHHHHHHhhCCCC--CCCchHHHHHHHHHHcCCChH
Q 042806 282 GCKVLLTARSLDVLS-RKMD---SQQNFSVGVLKEDEAWSLFKKMAGDYI--EGSEFKWVAKDVARECAGLPV 348 (390)
Q Consensus 282 ~s~IivTtr~~~v~~-~~~~---~~~~~~l~~L~~~ea~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~GlPL 348 (390)
+..||.||....... .... ....+++...+.++-.++|+.++.... ...++ ..+++.+.|+-=
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~sG 388 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFNG 388 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCCH
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCCH
Confidence 556777777543321 1121 235788888888888888887764222 22333 467888877543
No 57
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=5.9e-06 Score=75.76 Aligned_cols=144 Identities=17% Similarity=0.080 Sum_probs=87.9
Q ss_pred hHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhc--CCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCC
Q 042806 160 MSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETE--KLFDQVIFVEVSK-IQDIRKIQGEIADKLGLTLHE 236 (390)
Q Consensus 160 ~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~--~~f~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~ 236 (390)
++.++.|...+..++.+.+.++|++|+||||+|+.+.+..... .+.+ ..++..+. ...+.+ .+++...+...+.
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~~~~~p~- 79 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDFLNYSPE- 79 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHHHTSCCS-
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHHHhhccc-
Confidence 3456667777777677889999999999999999998863211 2334 34444433 333333 2334444432211
Q ss_pred CCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecch-hhhhhcCCCcceEecCCCCHH
Q 042806 237 ESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARSL-DVLSRKMDSQQNFSVGVLKED 313 (390)
Q Consensus 237 ~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~~-~v~~~~~~~~~~~~l~~L~~~ 313 (390)
.+++-++|+|+++.. ...+.+...+-.-.+.+.+|++|.+. .+.... ... .+++.+++.+
T Consensus 80 ---------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI-~SR-~~~f~~l~~~ 142 (305)
T 2gno_A 80 ---------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTI-KSR-VFRVVVNVPK 142 (305)
T ss_dssp ---------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHH-HTT-SEEEECCCCH
T ss_pred ---------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHH-Hce-eEeCCCCCHH
Confidence 123369999999754 23344443332334567777776543 332222 222 9999999999
Q ss_pred HHHHHHHHhh
Q 042806 314 EAWSLFKKMA 323 (390)
Q Consensus 314 ea~~lf~~~~ 323 (390)
+..+.+.+.+
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 58
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.17 E-value=0.00011 Score=65.47 Aligned_cols=179 Identities=16% Similarity=0.191 Sum_probs=94.1
Q ss_pred cccccchhHHHHHHH---HHhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 042806 153 YEACESRMSTLNDIL---DALKN---------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIR 220 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~---~~L~~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 220 (390)
...++|.+..++.+. .++.. ...+-+.|+|++|+||||||+.+++..... .+.+..+.-.+.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~~~~~- 84 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSDFVEM- 84 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCSSTTS-
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHHHHHH-
Confidence 446777766555444 33332 124458899999999999999999876421 233332221110
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc----------------ccccccCCCC--CCCCC
Q 042806 221 KIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL----------------DFQAVGIPHG--DDRKG 282 (390)
Q Consensus 221 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------------~~~~l~~~l~--~~~~~ 282 (390)
... ........+.+......+.++++|+++... ....+...+. ....+
T Consensus 85 -------------~~~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 85 -------------FVG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp -------------CCC-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred -------------hhh-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 000 111223333444444455899999984210 0011111110 12345
Q ss_pred cEEEEEecchhhh-hhcC---CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC-ChHHHHHH
Q 042806 283 CKVLLTARSLDVL-SRKM---DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAG-LPVSIVTV 353 (390)
Q Consensus 283 s~IivTtr~~~v~-~~~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G-lPLai~~l 353 (390)
..||.||...... .... .....+.+...+.++-.+++...+......++. ....++..+.| .+--|..+
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHHHHH
Confidence 5677777654321 1111 123478888888888888888776422111111 13457778888 66555543
No 59
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.17 E-value=6.3e-07 Score=80.65 Aligned_cols=171 Identities=17% Similarity=0.129 Sum_probs=88.0
Q ss_pred ccccchhHHHHHHHHHhc---C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHH
Q 042806 154 EACESRMSTLNDILDALK---N---------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRK 221 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~ 221 (390)
..++|.+..++.+.+.+. . ...+-+.|+|++|+|||+||+.+++..... |- .+..+...+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~~---~v~~~~~~~--- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP--FF---SMGGSSFIE--- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC--CC---CCCSCTTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--EE---EechHHHHH---
Confidence 456776665555544332 1 123447799999999999999999986432 21 111111100
Q ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc-----------------ccccccCCCCC---CCC
Q 042806 222 IQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL-----------------DFQAVGIPHGD---DRK 281 (390)
Q Consensus 222 l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~-----------------~~~~l~~~l~~---~~~ 281 (390)
.+... .... ...+.+......+.+|+||+++... .+..+...+.. ...
T Consensus 83 -------~~~~~-~~~~----~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 83 -------MFVGL-GASR----VRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp -------SCSSS-CSSS----SSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred -------hhcch-HHHH----HHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 00000 0000 1111222222345899999995331 12222222211 122
Q ss_pred CcEEEEEecchhhhh-hcC---CCcceEecCCCCHHHHHHHHHHhhCCCC--CCCchHHHHHHHHHHcCCChH
Q 042806 282 GCKVLLTARSLDVLS-RKM---DSQQNFSVGVLKEDEAWSLFKKMAGDYI--EGSEFKWVAKDVARECAGLPV 348 (390)
Q Consensus 282 ~s~IivTtr~~~v~~-~~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~GlPL 348 (390)
...||.||....... ... .....+.+.+.+.++-.+++...+.... ....+ ..+++.+.|.|-
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~----~~la~~~~g~~g 219 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNL----QEVAKLTAGLAG 219 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCT----TTTTSSSCSSCH
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCH----HHHHHHcCCCCH
Confidence 356777776543211 111 1235788999999999999988774221 11222 346677778754
No 60
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.15 E-value=6.2e-07 Score=72.87 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=34.3
Q ss_pred cccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 155 ACESRMSTLNDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.++|+...+.++.+.+.. ....-|.|+|++|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 467888888888776642 2334577999999999999999988753
No 61
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=3.1e-05 Score=73.91 Aligned_cols=172 Identities=16% Similarity=0.199 Sum_probs=92.4
Q ss_pred CcccccchhHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 042806 152 DYEACESRMSTLNDILDALK----N---------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQD 218 (390)
Q Consensus 152 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 218 (390)
...++.|-+..++.|.+.+. . ..++-+.++||+|+|||+||+.+++..... .+.+..+...+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~ 244 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH 244 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc
Confidence 35567777777766665443 1 245678999999999999999999987532 33344332211
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--------cc--------cccccCCCC--CCC
Q 042806 219 IRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--------LD--------FQAVGIPHG--DDR 280 (390)
Q Consensus 219 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--------~~--------~~~l~~~l~--~~~ 280 (390)
. + .......+..+........++++++|+++.. .. ...+...+. ...
T Consensus 245 ~--------------~-~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 245 K--------------Y-LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp S--------------S-CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred c--------------c-cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 0 0 0011223344444444556799999999521 00 111111110 123
Q ss_pred CCcEEEEEecchhhh-hhcC---CCcceEecCCCCH-HHHHHHHHHhhCCCC--CCCchHHHHHHHHHHcCCCh
Q 042806 281 KGCKVLLTARSLDVL-SRKM---DSQQNFSVGVLKE-DEAWSLFKKMAGDYI--EGSEFKWVAKDVARECAGLP 347 (390)
Q Consensus 281 ~~s~IivTtr~~~v~-~~~~---~~~~~~~l~~L~~-~ea~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~GlP 347 (390)
.+..||.||...... .... .....+++..++. ++-..+|..++.... ...++ ..+++.+.|+-
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTCC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCCC
Confidence 455677777653321 1111 1224677765654 445566666653221 22233 46778887754
No 62
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.10 E-value=3.9e-06 Score=77.04 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=58.6
Q ss_pred cccchhHHHHHHHHHhcCC--------C-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 042806 155 ACESRMSTLNDILDALKNP--------D-VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGE 225 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~~--------~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~ 225 (390)
.++|....++.+...+... . ...+.++|++|+|||++|+.+++..... -...+.+.++....... ..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~-~~- 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA-VS- 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH-HH-
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc-HH-
Confidence 4667777777776665431 1 3478999999999999999999986432 12245555554332211 11
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 042806 226 IADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN 266 (390)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 266 (390)
..++......... ....+...+......+++||++...
T Consensus 94 --~l~g~~~~~~~~~-~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 94 --RLIGAPPGYVGYE-EGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp --HHHCCCTTSTTTT-TCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred --HhcCCCCcccccc-ccchHHHHHHhCCCeEEEEeChhhc
Confidence 1223221111100 0023334444334479999999654
No 63
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.07 E-value=1.7e-05 Score=72.63 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=36.8
Q ss_pred cccchhHHHHHHHHHhcC--------------CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 155 ACESRMSTLNDILDALKN--------------PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.++|++..+..+...+.. .....+.|+|++|+|||++|+.+.+...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 578888888888776643 2345688999999999999999998873
No 64
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.04 E-value=3.1e-05 Score=75.12 Aligned_cols=173 Identities=16% Similarity=0.214 Sum_probs=94.1
Q ss_pred cccccchhHHHHHHH---HHhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 042806 153 YEACESRMSTLNDIL---DALKNP---------DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIR 220 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~---~~L~~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 220 (390)
...++|.+..+.++. ..+..+ -++-+.|+|++|+|||+||+.+++..... .+.++.+.....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHHHHHH-
Confidence 345777766554444 444321 23458899999999999999999876432 233443322110
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc----------------ccccccCCCC--CCCCC
Q 042806 221 KIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL----------------DFQAVGIPHG--DDRKG 282 (390)
Q Consensus 221 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------------~~~~l~~~l~--~~~~~ 282 (390)
+ .. ........+........+++|+||+++... .+..+...+. ....+
T Consensus 89 ---------~----~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 ---------F----VG-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp ---------C----TT-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred ---------H----hc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 00 011122233333334456999999995421 1111211110 12345
Q ss_pred cEEEEEecchhhhh-hcC---CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCh
Q 042806 283 CKVLLTARSLDVLS-RKM---DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLP 347 (390)
Q Consensus 283 s~IivTtr~~~v~~-~~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 347 (390)
..||.||....... ... .....+.+.+.+.++-.++|..++......++.. ...+++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~--l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN--LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh--HHHHHHhcCCCc
Confidence 67777777654321 111 1234788888888888888887775322112111 345788888877
No 65
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.01 E-value=0.0001 Score=71.99 Aligned_cols=179 Identities=13% Similarity=0.161 Sum_probs=99.9
Q ss_pred cccccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 153 YEACESRMSTLNDILDALKN-------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
...++|.+..+.+|.+.+.. ...+-+.|+|++|+|||+||+.+++.... ..+.++++
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~----- 272 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGP----- 272 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHH-----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEch-----
Confidence 45688988888888776642 34566889999999999999999887632 12333321
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc-------------ccccccCCCC--CCCCCcE
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL-------------DFQAVGIPHG--DDRKGCK 284 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~-------------~~~~l~~~l~--~~~~~s~ 284 (390)
++. ..+ . .........+.......++.+|+||+++... ....+...+. ....+..
T Consensus 273 -~l~----~~~----~-g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 273 -EIM----SKL----A-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp -HHH----TSC----T-THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred -Hhh----hhh----c-chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 111 000 0 0011122233333334456899999994210 0111111111 1233556
Q ss_pred EEEEecchhh-hhhcC---CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCC-hHHHHHH
Q 042806 285 VLLTARSLDV-LSRKM---DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGL-PVSIVTV 353 (390)
Q Consensus 285 IivTtr~~~v-~~~~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl-PLai~~l 353 (390)
||.||..... ..... .....+.+...+.++-.++|+.++.......+. ....+++.+.|. +-.|..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~--~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTC--CHHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchh--hHHHHHHHccCCcHHHHHHH
Confidence 7777775432 11111 223478999999999999999887532211111 124677777774 5555544
No 66
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.92 E-value=8.9e-05 Score=71.93 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=36.2
Q ss_pred cccccchhHHHHHH---HHHhcCCC--ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 153 YEACESRMSTLNDI---LDALKNPD--VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 153 ~~~~~gR~~~~~~l---~~~L~~~~--~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...++|.+..++.+ ++.+..+. .+-+.++|++|+|||+||+.+.+...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 35788988776644 44444432 35788999999999999999999875
No 67
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.89 E-value=0.00018 Score=66.81 Aligned_cols=173 Identities=14% Similarity=0.080 Sum_probs=92.1
Q ss_pred cccccchhHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 042806 153 YEACESRMSTLNDILDALKN-----PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~ 227 (390)
...++|.+..++.+...+.. .....+.|+|++|+|||||++.+++..... | .....+-.....++
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~---~~~sg~~~~~~~~l----- 93 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--I---HVTSGPVLVKQGDM----- 93 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--E---EEEETTTCCSHHHH-----
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEechHhcCHHHH-----
Confidence 45677877766666555542 234678999999999999999999987432 1 11111111111111
Q ss_pred HHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc--ccccccCC---CC------CC---------CCCcEEE-
Q 042806 228 DKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL--DFQAVGIP---HG------DD---------RKGCKVL- 286 (390)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~---l~------~~---------~~~s~Ii- 286 (390)
..+...+. .+ .++++|++.... ..+.+... .. .. .+...++
T Consensus 94 ----------------~~~~~~~~-~~-~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 94 ----------------AAILTSLE-RG-DVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp ----------------HHHHHHCC-TT-CEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred ----------------HHHHHHcc-CC-CEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 11111111 22 467778875431 11111100 00 00 0112233
Q ss_pred EEecchhhhhh-cCCCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042806 287 LTARSLDVLSR-KMDSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 287 vTtr~~~v~~~-~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
.|++...+... .......+.+++.+.++-.+++.+.+..... .-.++.+..|++.+.|.|-.+..+.
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHHH
Confidence 34443322111 1112236889999999999999887641111 1224568899999999997655443
No 68
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.84 E-value=3.9e-05 Score=65.63 Aligned_cols=113 Identities=15% Similarity=0.068 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCC----CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 042806 161 STLNDILDALKNP----DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHE 236 (390)
Q Consensus 161 ~~~~~l~~~L~~~----~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~ 236 (390)
..++.+.+++... ..+.+.|+|++|+|||+||+.+++..... ...++|+++ .++...+...+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~---- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYV------PELFRELKHSLQD---- 103 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEH------HHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEh------HHHHHHHHHHhcc----
Confidence 3444555555432 12688999999999999999999987643 234556544 3444444332211
Q ss_pred CCchHHHHHHHHHHhCCCeEEEEEeCCCCC--ccccc--ccC-CCCCC-CCCcEEEEEecc
Q 042806 237 ESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQA--VGI-PHGDD-RKGCKVLLTARS 291 (390)
Q Consensus 237 ~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~--l~~-~l~~~-~~~s~IivTtr~ 291 (390)
... ..+.+.+... -+|||||++.. ..|.. +.. .+... ..+.++|+||..
T Consensus 104 ~~~----~~~~~~~~~~--~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 QTM----NEKLDYIKKV--PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp CCC----HHHHHHHHHS--SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred chH----HHHHHHhcCC--CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 111 2223334332 39999999643 33322 211 11111 235568888874
No 69
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.83 E-value=2.2e-06 Score=69.43 Aligned_cols=45 Identities=9% Similarity=0.099 Sum_probs=31.8
Q ss_pred cccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 155 ACESRMSTLNDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.++|+...+.++.+.+.. ....-|.|+|++|+|||++|+.+.+..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 567887777777766542 233447799999999999999997754
No 70
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.81 E-value=1.5e-05 Score=71.39 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=38.4
Q ss_pred ccccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 042806 154 EACESRMSTLNDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK 215 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 215 (390)
+.++|+...+..+.+.+.. .....+.|+|++|+|||+||+.+++..... -...+.++++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~ 67 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAA 67 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGG
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCC
Confidence 3577888777777665532 233567799999999999999999876432 12245555554
No 71
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.78 E-value=4.6e-05 Score=69.81 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=35.4
Q ss_pred cccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 155 ACESRMSTLNDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.++|+...+.++.+.+.. .....+.|+|++|+|||++|+.+.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 477887777777766543 3345577999999999999999998653
No 72
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.77 E-value=6.4e-05 Score=77.24 Aligned_cols=173 Identities=13% Similarity=0.191 Sum_probs=94.3
Q ss_pred cccccchhHHHHHHHHHh----cC---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 153 YEACESRMSTLNDILDAL----KN---------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L----~~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
..++.|-+..+++|.+.+ .. ..++-|.++|++|+|||+||+.+++..... .+.++.+
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~----- 272 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGP----- 272 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHH-----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhH-----
Confidence 344566655555554433 22 235679999999999999999999887532 2333321
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc--------c-----cccccCCCC--CCCCCcE
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL--------D-----FQAVGIPHG--DDRKGCK 284 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--------~-----~~~l~~~l~--~~~~~s~ 284 (390)
++. + ... ......+..+.+......+++|+||+++... . ...+...+. ....+..
T Consensus 273 -~l~-------s-k~~-gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 273 -EIM-------S-KLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -HHH-------S-SCT-THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred -Hhh-------c-ccc-hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 111 0 000 0112233344444445567999999996431 0 011111110 1123445
Q ss_pred EEEEecchhhh-hhcC---CCcceEecCCCCHHHHHHHHHHhhCCCC--CCCchHHHHHHHHHHcCCChHH
Q 042806 285 VLLTARSLDVL-SRKM---DSQQNFSVGVLKEDEAWSLFKKMAGDYI--EGSEFKWVAKDVARECAGLPVS 349 (390)
Q Consensus 285 IivTtr~~~v~-~~~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~GlPLa 349 (390)
||.||...... .... .....+++...+.++-.++|+.+..... .+.+ ...|++++.|.--|
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsga 409 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGA 409 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCHH
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCHH
Confidence 66666543321 1111 2335788999999888899988775221 2223 34688888877533
No 73
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.72 E-value=0.00011 Score=72.79 Aligned_cols=138 Identities=20% Similarity=0.195 Sum_probs=66.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKE 253 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (390)
....+.++|++|+||||||+.++...... ...+.++...+..++........+.. ..............
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~-----~~~i~~~~~~~~~~~~g~~~~~ig~~------~~~~~~~~~~a~~~ 175 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRK-----FVRISLGGVRDESEIRGHRRTYVGAM------PGRIIQGMKKAGKL 175 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCE-----EEEECCCC--------------------------CHHHHHHTTCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC-----eEEEEecccchhhhhhhHHHHHhccC------chHHHHHHHHhhcc
Confidence 45689999999999999999999887422 22333333222222222111111110 00111111222223
Q ss_pred CeEEEEEeCCCCCcc------cccccCCCCCC---------------CCCcEEEEEecchhhh-hhcCCCcceEecCCCC
Q 042806 254 KTILVILDNIWGNLD------FQAVGIPHGDD---------------RKGCKVLLTARSLDVL-SRKMDSQQNFSVGVLK 311 (390)
Q Consensus 254 ~~~LlVlDdv~~~~~------~~~l~~~l~~~---------------~~~s~IivTtr~~~v~-~~~~~~~~~~~l~~L~ 311 (390)
. -+++||++..... ...+...+... .....||.||...... .....-...+++.+++
T Consensus 176 ~-~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~ 254 (543)
T 3m6a_A 176 N-PVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYT 254 (543)
T ss_dssp S-EEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCC
T ss_pred C-CEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCC
Confidence 4 4888999975421 12222222110 1345667666653211 1111111478999999
Q ss_pred HHHHHHHHHHhh
Q 042806 312 EDEAWSLFKKMA 323 (390)
Q Consensus 312 ~~ea~~lf~~~~ 323 (390)
.++-.+++..++
T Consensus 255 ~~e~~~Il~~~l 266 (543)
T 3m6a_A 255 EIEKLEIVKDHL 266 (543)
T ss_dssp HHHHHHHHHHTH
T ss_pred HHHHHHHHHHHH
Confidence 999888887765
No 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.69 E-value=2.4e-05 Score=81.03 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=82.2
Q ss_pred ccccchhHHHHHHHHHhcC-------CC--ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 042806 154 EACESRMSTLNDILDALKN-------PD--VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQG 224 (390)
Q Consensus 154 ~~~~gR~~~~~~l~~~L~~-------~~--~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~ 224 (390)
..++|.+..+..+...+.. ++ ...+.++|++|+|||++|+.+++..... -...+.++++........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~~-- 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHST-- 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccccc--
Confidence 3578888877777766642 11 1268899999999999999999987322 223455665543211000
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc--ccccccCC-----CCC------CCCCcEEEEEecc
Q 042806 225 EIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL--DFQAVGIP-----HGD------DRKGCKVLLTARS 291 (390)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~-----l~~------~~~~s~IivTtr~ 291 (390)
. ...+.+.+......+|+||++.... ....+... +.. ...+.+||+||..
T Consensus 567 -------------~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 567 -------------S----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp -------------C-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred -------------c----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0 1112223333333599999996541 11222111 100 1235688888873
Q ss_pred hh-------------hhhh-cCCCcceEecCCCCHHHHHHHHHHhh
Q 042806 292 LD-------------VLSR-KMDSQQNFSVGVLKEDEAWSLFKKMA 323 (390)
Q Consensus 292 ~~-------------v~~~-~~~~~~~~~l~~L~~~ea~~lf~~~~ 323 (390)
.. .... .......+.+.+++.++..+++...+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 10 0000 11123589999999999888887655
No 75
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.57 E-value=9.6e-05 Score=76.47 Aligned_cols=159 Identities=12% Similarity=0.124 Sum_probs=83.5
Q ss_pred cccchhHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 042806 155 ACESRMSTLNDILDALKN-------P--DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGE 225 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~ 225 (390)
.++|.+..+..+...+.. + ....+.++|++|+|||++|+.+.+... ...+.++.+.......
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~---- 529 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT---- 529 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSC----
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhh----
Confidence 467777777766665542 1 123688999999999999999998873 2244455543321100
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC--cccccccCCCCC-----C------CCCcEEEEEecch
Q 042806 226 IADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN--LDFQAVGIPHGD-----D------RKGCKVLLTARSL 292 (390)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~-----~------~~~s~IivTtr~~ 292 (390)
+...++.. +..........+.+.+......+|+||++... ..+..+...+.. . ..+..||.||...
T Consensus 530 ~~~l~g~~-~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~ 608 (758)
T 1r6b_X 530 VSRLIGAP-PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAG 608 (758)
T ss_dssp CSSSCCCC-SCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSS
T ss_pred HhhhcCCC-CCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcc
Confidence 00001111 00000001112344444444489999999754 222222111110 0 1345677787641
Q ss_pred h--------------------------hhhh-cCCCcceEecCCCCHHHHHHHHHHhh
Q 042806 293 D--------------------------VLSR-KMDSQQNFSVGVLKEDEAWSLFKKMA 323 (390)
Q Consensus 293 ~--------------------------v~~~-~~~~~~~~~l~~L~~~ea~~lf~~~~ 323 (390)
. +... .......+.+.+++.++...++...+
T Consensus 609 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 609 VRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp CC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHH
Confidence 1 0000 01122468899999998888887665
No 76
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.48 E-value=0.0012 Score=58.55 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=77.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeE
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTI 256 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 256 (390)
-+.|+|++|+|||||++.++..... ..+.+.. .++.. .. . ......+..+.+......+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~------~~~~~----~~----~-~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARV-----PFITASG------SDFVE----MF----V-GVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEH------HHHHH----SC----T-THHHHHHHHHHHHHTTSSSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeH------HHHHH----HH----h-hHHHHHHHHHHHHHHhcCCe
Confidence 3889999999999999999987642 1233322 11110 00 0 00011223333443333458
Q ss_pred EEEEeCCCCCc------------c----cccccCCCCCC--CCCcEEEEEecchhhhhh-cC---CCcceEecCCCCHHH
Q 042806 257 LVILDNIWGNL------------D----FQAVGIPHGDD--RKGCKVLLTARSLDVLSR-KM---DSQQNFSVGVLKEDE 314 (390)
Q Consensus 257 LlVlDdv~~~~------------~----~~~l~~~l~~~--~~~s~IivTtr~~~v~~~-~~---~~~~~~~l~~L~~~e 314 (390)
++++|+++... . ...+...+... .....++.||........ .. .....+++...+.++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 99999994210 0 11121111111 122345556665443221 11 234578899999988
Q ss_pred HHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCh
Q 042806 315 AWSLFKKMAGDYIEGSEFKWVAKDVARECAGLP 347 (390)
Q Consensus 315 a~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 347 (390)
-.++++..+.......+. ....+++.+.|.-
T Consensus 191 r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 191 REQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 888888776422111111 1346788888764
No 77
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.44 E-value=0.001 Score=60.46 Aligned_cols=85 Identities=9% Similarity=0.101 Sum_probs=56.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-----CchHHH-HHHHHH-
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE-----SDSGRA-RSLRNR- 249 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~-----~~~~~~-~~l~~~- 249 (390)
++.|+|++|+|||||+.+++........=..++|++....++.. .++.++.+.+.. ...+.+ ..+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999998876543112357898887777653 367777654421 122222 233333
Q ss_pred --HhCCCeEEEEEeCCCCC
Q 042806 250 --LKKEKTILVILDNIWGN 266 (390)
Q Consensus 250 --l~~~~~~LlVlDdv~~~ 266 (390)
+...++-|+|+|-+...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 35566789999999654
No 78
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.43 E-value=0.00014 Score=66.11 Aligned_cols=27 Identities=33% Similarity=0.300 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.++.+.++|++|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356788999999999999999999885
No 79
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.42 E-value=0.0012 Score=64.29 Aligned_cols=170 Identities=15% Similarity=0.172 Sum_probs=89.6
Q ss_pred cccccchhHHHHHH---HHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 042806 153 YEACESRMSTLNDI---LDALKNP---------DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIR 220 (390)
Q Consensus 153 ~~~~~gR~~~~~~l---~~~L~~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 220 (390)
...++|.+..+.++ +..+..+ -.+-+.|+|++|+||||||+.++..... ..+.++.+.-...
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~~- 103 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVEM- 103 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTSS-
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHHHh-
Confidence 34577776555444 4444321 1234889999999999999999987642 2344443321110
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC---CCeEEEEEeCCCCCcc----------------cccccCCCCC--C
Q 042806 221 KIQGEIADKLGLTLHEESDSGRARSLRNRLKK---EKTILVILDNIWGNLD----------------FQAVGIPHGD--D 279 (390)
Q Consensus 221 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~~~LlVlDdv~~~~~----------------~~~l~~~l~~--~ 279 (390)
........+...+.. ..++++++|+++.... ...+...+.. .
T Consensus 104 -----------------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 104 -----------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp -----------------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred -----------------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 000111222232322 2348999999953210 1112111111 1
Q ss_pred CCCcEEEEEecchhhhhh-cC---CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCh
Q 042806 280 RKGCKVLLTARSLDVLSR-KM---DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGLP 347 (390)
Q Consensus 280 ~~~s~IivTtr~~~v~~~-~~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 347 (390)
.....++.||........ .. .....+.+...+.++-.+++..++......++. ....|+..+.|+.
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCC
Confidence 234456666666544221 11 233588899999998889998776422111111 1345777777765
No 80
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.40 E-value=0.00068 Score=63.12 Aligned_cols=86 Identities=19% Similarity=0.252 Sum_probs=56.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHE------ESDSGRARSLR 247 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~ 247 (390)
...++.|+|++|+|||||+.+++......+ ..++|++....++.. .++.++..... .+.......+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 457999999999999999999998865421 246788777666543 45566654322 12233334444
Q ss_pred HHHhCCCeEEEEEeCCCCC
Q 042806 248 NRLKKEKTILVILDNIWGN 266 (390)
Q Consensus 248 ~~l~~~~~~LlVlDdv~~~ 266 (390)
..+...+.-++|+|.+...
T Consensus 133 ~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHTSCCSEEEEECTTTC
T ss_pred HHhhhcCCCeEEehHhhhh
Confidence 4444445469999998543
No 81
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.39 E-value=0.0012 Score=57.76 Aligned_cols=92 Identities=11% Similarity=0.123 Sum_probs=56.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEK----LFDQVIFVEVSKIQDIRKIQGEIADKLGLTLH----------EESD 239 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~----------~~~~ 239 (390)
...++.|+|++|+|||||++.+........ .-..++|+.....++...+. .++..++.... ..+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 456899999999999999999988532211 12468888877655555443 34455554321 1111
Q ss_pred hH---HHHHHHHHHhCCCeEEEEEeCCCCC
Q 042806 240 SG---RARSLRNRLKKEKTILVILDNIWGN 266 (390)
Q Consensus 240 ~~---~~~~l~~~l~~~~~~LlVlDdv~~~ 266 (390)
.. ....+.+.+...++-+||+|.+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 11 2233555555556689999998643
No 82
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.35 E-value=0.00014 Score=76.15 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=35.3
Q ss_pred cccchhHHHHHHHHHhcC-------CC--ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 155 ACESRMSTLNDILDALKN-------PD--VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~-------~~--~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.++|.+..+..+...+.. ++ ...+.|+|++|+|||++|+.+.+...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468888877777666542 11 24788999999999999999998874
No 83
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.35 E-value=0.0022 Score=57.64 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=69.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQD--IRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEK 254 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~--~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 254 (390)
-+.|+|++|+|||||++.++..... ..+++..+...+ ..+. ...+..+.+......
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~-----------------~~~i~~vf~~a~~~~ 103 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGES-----------------ERAVRQVFQRAKNSA 103 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHH-----------------HHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHH-----------------HHHHHHHHHHHHhcC
Confidence 3899999999999999999987642 234444322111 0110 111223333322234
Q ss_pred eEEEEEeCCCCCcc---------c----ccccCCCCC--CCCCcEEEEEecchhhhhhc--C--CCcceEecCCCCHHHH
Q 042806 255 TILVILDNIWGNLD---------F----QAVGIPHGD--DRKGCKVLLTARSLDVLSRK--M--DSQQNFSVGVLKEDEA 315 (390)
Q Consensus 255 ~~LlVlDdv~~~~~---------~----~~l~~~l~~--~~~~s~IivTtr~~~v~~~~--~--~~~~~~~l~~L~~~ea 315 (390)
++++++|++..... . ..+...+.. .....-++.+|....+.... . .....+.+...+.++-
T Consensus 104 p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r 183 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183 (274)
T ss_dssp SEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHH
T ss_pred CCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHH
Confidence 58999999964211 0 001111111 12234566666655442211 1 2345788999999999
Q ss_pred HHHHHHhhC
Q 042806 316 WSLFKKMAG 324 (390)
Q Consensus 316 ~~lf~~~~~ 324 (390)
.++|+....
T Consensus 184 ~~il~~~~~ 192 (274)
T 2x8a_A 184 LAILKTITK 192 (274)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999988764
No 84
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.33 E-value=0.0031 Score=58.49 Aligned_cols=165 Identities=7% Similarity=-0.061 Sum_probs=101.2
Q ss_pred HHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHH
Q 042806 168 DALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLR 247 (390)
Q Consensus 168 ~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~ 247 (390)
+.+.+.-.++..++|+.|.||++.+..+.+..... .|+....+.+....++.++...+...
T Consensus 11 ~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~------------------ 71 (343)
T 1jr3_D 11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQAM------------------ 71 (343)
T ss_dssp HHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHHH------------------
T ss_pred HHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcCc------------------
Confidence 33332346789999999999999999998876533 25432223344445555544432111
Q ss_pred HHHhCCCeEEEEEeCCCC-C--cccccccCCCCCCCCCcEEEEEecc-------hhhhhhcCCCcceEecCCCCHHHHHH
Q 042806 248 NRLKKEKTILVILDNIWG-N--LDFQAVGIPHGDDRKGCKVLLTARS-------LDVLSRKMDSQQNFSVGVLKEDEAWS 317 (390)
Q Consensus 248 ~~l~~~~~~LlVlDdv~~-~--~~~~~l~~~l~~~~~~s~IivTtr~-------~~v~~~~~~~~~~~~l~~L~~~ea~~ 317 (390)
-+-+++ -++|+|+++. . ..++.+...+..-.+++.+|+++.. ..+..........++..+++.++...
T Consensus 72 -plf~~~-kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 72 -SLFASR-QTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPR 149 (343)
T ss_dssp -HHCCSC-EEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHH
T ss_pred -CCccCC-eEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHH
Confidence 011233 6889999865 3 3445554444333456777766643 12333334455789999999999998
Q ss_pred HHHHhhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042806 318 LFKKMAGDYIEGSEFKWVAKDVARECAGLPVSIVTVA 354 (390)
Q Consensus 318 lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~l~ 354 (390)
.+.+.+......- .++.+..+++.++|.+..+...-
T Consensus 150 ~l~~~~~~~g~~i-~~~a~~~l~~~~~gdl~~~~~el 185 (343)
T 1jr3_D 150 WVAARAKQLNLEL-DDAANQVLCYCYEGNLLALAQAL 185 (343)
T ss_dssp HHHHHHHHTTCEE-CHHHHHHHHHSSTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHhchHHHHHHHHH
Confidence 8887764221111 13567789999999888877643
No 85
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.32 E-value=0.0004 Score=63.34 Aligned_cols=70 Identities=11% Similarity=0.136 Sum_probs=44.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe--CCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEV--SKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKK 252 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v--~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (390)
.+++.|+|++|+|||+||.++...... .++|++. ....+. . ..+.......+.+.+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~-----~VlyIs~~~eE~v~~-------------~--~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGG-----KDKYATVRFGEPLSG-------------Y--NTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHT-----TSCCEEEEBSCSSTT-------------C--BCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCC-----CEEEEEecchhhhhh-------------h--hcCHHHHHHHHHHHHhh
Confidence 457789999999999999999887211 2356666 222110 0 02233344556666655
Q ss_pred CCeEEEEEeCCCCC
Q 042806 253 EKTILVILDNIWGN 266 (390)
Q Consensus 253 ~~~~LlVlDdv~~~ 266 (390)
.+ +||+|++...
T Consensus 183 ~~--LLVIDsI~aL 194 (331)
T 2vhj_A 183 HR--VIVIDSLKNV 194 (331)
T ss_dssp CS--EEEEECCTTT
T ss_pred CC--EEEEeccccc
Confidence 44 9999999653
No 86
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.32 E-value=0.00035 Score=60.70 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=32.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEI 226 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i 226 (390)
...++.|.|++|+|||||++.++......+ ..+.|+.... +..++...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~--~~~~~~~~~ 70 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE--SRDSIIRQA 70 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS--CHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc--CHHHHHHHH
Confidence 346899999999999999999986654321 2355655433 445544443
No 87
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.28 E-value=0.0013 Score=59.20 Aligned_cols=149 Identities=16% Similarity=0.139 Sum_probs=77.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeE
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTI 256 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 256 (390)
-+.|+|++|+|||||++.++..... ..+.+... ++.. ... ......+..+.+......+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~------~~~~----~~~-----~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS------DFVE----MFV-----GVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH------HHHH----STT-----THHHHHHHHHHHHHHTSCSE
T ss_pred eEEEECCCcChHHHHHHHHHHHcCC-----CEEEecHH------HHHH----HHh-----hHHHHHHHHHHHHHHhcCCc
Confidence 3889999999999999999987642 12333221 1111 000 00011222333433333458
Q ss_pred EEEEeCCCCC------------cc----cccccCCCCCC--CCCcEEEEEecchhhhhh----cCCCcceEecCCCCHHH
Q 042806 257 LVILDNIWGN------------LD----FQAVGIPHGDD--RKGCKVLLTARSLDVLSR----KMDSQQNFSVGVLKEDE 314 (390)
Q Consensus 257 LlVlDdv~~~------------~~----~~~l~~~l~~~--~~~s~IivTtr~~~v~~~----~~~~~~~~~l~~L~~~e 314 (390)
++++|++... .. ...+...+... .....++.||........ .......+++...+.++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 214 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHH
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHH
Confidence 9999999421 00 11111112111 122345556655433211 11234588999999998
Q ss_pred HHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCh
Q 042806 315 AWSLFKKMAGDYIEGSEFKWVAKDVARECAGLP 347 (390)
Q Consensus 315 a~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 347 (390)
-.+++...+.......+. ....++..+.|..
T Consensus 215 r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 215 REQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp HHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 888888776422211111 1346788888865
No 88
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.28 E-value=0.0014 Score=61.02 Aligned_cols=91 Identities=15% Similarity=0.226 Sum_probs=58.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEK----LFDQVIFVEVSKIQDIRKIQGEIADKLGLTLH----------EESD 239 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~----------~~~~ 239 (390)
...++.|+|++|+|||||+.+++....... .-..++|++....++...+.. ++..++.... ..+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 457899999999999999999988743211 124688998888777766543 4455554321 0111
Q ss_pred h---HHHHHHHHHHhC--CCeEEEEEeCCCC
Q 042806 240 S---GRARSLRNRLKK--EKTILVILDNIWG 265 (390)
Q Consensus 240 ~---~~~~~l~~~l~~--~~~~LlVlDdv~~ 265 (390)
. ..+..+...+.. .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 1 223344555554 5657999999853
No 89
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.28 E-value=0.00059 Score=55.31 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=32.7
Q ss_pred HHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 042806 167 LDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK 215 (390)
Q Consensus 167 ~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 215 (390)
+..|..-....+.|+|+.|+|||||++.++...... .+. .+++....
T Consensus 28 ~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~-~~~~~~~~ 74 (149)
T 2kjq_A 28 VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKN-AAYIDAAS 74 (149)
T ss_dssp HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCC-EEEEETTT
T ss_pred HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCc-EEEEcHHH
Confidence 334433355689999999999999999999987542 222 55665543
No 90
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.27 E-value=0.0021 Score=55.24 Aligned_cols=86 Identities=21% Similarity=0.227 Sum_probs=51.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-----------CCCCC-c-h
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLT-----------LHEES-D-S 240 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~-----------~~~~~-~-~ 240 (390)
...++.|+|++|+|||||+..+.. . . -..++|++.....+...+.. +...++.. ..... . .
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~--~--~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L--S--GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H--H--CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H--c--CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 456899999999999999999988 2 1 24578888776556555443 33333221 11111 1 1
Q ss_pred HHHHHHHHHHhCCCeEEEEEeCCCCC
Q 042806 241 GRARSLRNRLKKEKTILVILDNIWGN 266 (390)
Q Consensus 241 ~~~~~l~~~l~~~~~~LlVlDdv~~~ 266 (390)
..+..+...+.. ++-+||+|.+...
T Consensus 93 ~~~~~~~~l~~~-~~~lliiD~~~~~ 117 (220)
T 2cvh_A 93 RVIGSLKKTVDS-NFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHHCCT-TEEEEEEECCCCC
T ss_pred HHHHHHHHHhhc-CCCEEEEcCcHHH
Confidence 123333333333 4679999998654
No 91
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.27 E-value=0.00087 Score=69.58 Aligned_cols=151 Identities=13% Similarity=0.170 Sum_probs=82.5
Q ss_pred cccccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 153 YEACESRMSTLNDILDALKN-------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
...++|.+..+++|.+++.. .....+.|+|++|+||||||+.+....... .+.++.+
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~-----~i~v~~~----- 272 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGP----- 272 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE-----EEEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc-----EEEEEch-----
Confidence 45678887777777666531 234678999999999999999998875321 2333321
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCcc-------------ccccc---CCCCCCCCCc
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNLD-------------FQAVG---IPHGDDRKGC 283 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~---~~l~~~~~~s 283 (390)
++. .... ......+..+.+......+.++++|++..... ...+. ..+ ....+.
T Consensus 273 -~l~--------~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~-~~~~~v 341 (806)
T 1ypw_A 273 -EIM--------SKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL-KQRAHV 341 (806)
T ss_dssp -HHS--------SSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSS-CTTSCC
T ss_pred -Hhh--------hhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhh-cccccE
Confidence 110 0000 01111223333333333458999999953210 01111 111 112345
Q ss_pred EEEEEecchhhhhhcC----CCcceEecCCCCHHHHHHHHHHhhC
Q 042806 284 KVLLTARSLDVLSRKM----DSQQNFSVGVLKEDEAWSLFKKMAG 324 (390)
Q Consensus 284 ~IivTtr~~~v~~~~~----~~~~~~~l~~L~~~ea~~lf~~~~~ 324 (390)
.+|.||.......... .....+.+...+.++-.+++...+.
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 5666666532211111 1224678888899999999987765
No 92
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.21 E-value=0.00048 Score=63.11 Aligned_cols=53 Identities=25% Similarity=0.323 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHhcCC---CccEEEEEcCCCCcHHHHHHHHHHHhh-hcCCCCeEEEEEe
Q 042806 159 RMSTLNDILDALKNP---DVNMLGIYGMGGIVKTTLAKEVARKAE-TEKLFDQVIFVEV 213 (390)
Q Consensus 159 R~~~~~~l~~~L~~~---~~~vi~I~G~~GvGKTtLa~~v~~~~~-~~~~f~~~~wv~v 213 (390)
+...+..+.+++... ....+.|+|++|+|||+||..+++... .. .+. +.++.+
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-g~~-v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-GVS-TTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-CCC-EEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-CCc-EEEEEH
Confidence 444444555555431 246788999999999999999999876 43 233 445443
No 93
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.18 E-value=0.0015 Score=60.82 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=54.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHE------ESDSGRARSLR 247 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~ 247 (390)
...++.|+|++|+|||||+.++....... =..++|++....++.. .++.++...+. .+.......+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45789999999999999999998776432 2357888887766543 25556644321 12222233333
Q ss_pred HHHhCCCeEEEEEeCCCC
Q 042806 248 NRLKKEKTILVILDNIWG 265 (390)
Q Consensus 248 ~~l~~~~~~LlVlDdv~~ 265 (390)
......++-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 333444556999999854
No 94
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.18 E-value=0.0013 Score=60.62 Aligned_cols=90 Identities=12% Similarity=0.205 Sum_probs=58.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc------------CCC--CeEEEEEeCCCCCHHHHHHHHHHHhCCCCC----
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETE------------KLF--DQVIFVEVSKIQDIRKIQGEIADKLGLTLH---- 235 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~------------~~f--~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~---- 235 (390)
...++.|+|++|+|||+|+.+++...... +.. ..++|++....++.+++.. ++..++.+..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 45789999999999999999998763211 111 4688988888777776654 3455654321
Q ss_pred -----C-CCch---HHHHHHHHHHhC-CCeEEEEEeCCC
Q 042806 236 -----E-ESDS---GRARSLRNRLKK-EKTILVILDNIW 264 (390)
Q Consensus 236 -----~-~~~~---~~~~~l~~~l~~-~~~~LlVlDdv~ 264 (390)
. .+.. .....+...+.. .+.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0 1111 233445556655 555799999985
No 95
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.18 E-value=0.0011 Score=61.11 Aligned_cols=91 Identities=16% Similarity=0.282 Sum_probs=59.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcC---C-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEK---L-FDQVIFVEVSKIQDIRKIQGEIADKLGLTLH----------EESD 239 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~---~-f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~----------~~~~ 239 (390)
...++.|+|++|+|||||+.+++....... . -..++|++....++...+.. ++..++.... ..+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 456899999999999999999987743210 0 23688998888777766553 4556655321 0111
Q ss_pred h---HHHHHHHHHHhC-CCeEEEEEeCCCC
Q 042806 240 S---GRARSLRNRLKK-EKTILVILDNIWG 265 (390)
Q Consensus 240 ~---~~~~~l~~~l~~-~~~~LlVlDdv~~ 265 (390)
. ..+..+...+.. .+.-+||+|.+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 1 234455555655 5667999999853
No 96
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.13 E-value=0.0022 Score=60.04 Aligned_cols=85 Identities=20% Similarity=0.238 Sum_probs=54.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHE------ESDSGRARSLR 247 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~ 247 (390)
...++.|+|++|+||||||.++....... -..++|++....++.. .+..++.+.+. .+.......+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 45689999999999999999998876433 2358899888766543 24555553221 12223333444
Q ss_pred HHHhCCCeEEEEEeCCCC
Q 042806 248 NRLKKEKTILVILDNIWG 265 (390)
Q Consensus 248 ~~l~~~~~~LlVlDdv~~ 265 (390)
..+.....-+||+|.+..
T Consensus 146 ~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHTTTCCSEEEEECTTT
T ss_pred HHHhcCCCCEEEEeChHH
Confidence 444444446999999854
No 97
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.08 E-value=0.0034 Score=56.99 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=36.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK-IQDIRKIQGEIADKLGL 232 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~l~~~i~~~l~~ 232 (390)
...+++|+|++|+||||++..+.......... .+.++.... .....+-+.......+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl 162 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQA 162 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCC
Confidence 45799999999999999999999877642222 244454433 22333334444443443
No 98
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.02 E-value=0.0019 Score=61.22 Aligned_cols=91 Identities=11% Similarity=0.171 Sum_probs=56.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc---C-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETE---K-LFDQVIFVEVSKIQDIRKIQGEIADKLGLTLH----------EESD 239 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~---~-~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~----------~~~~ 239 (390)
...++.|+|++|+|||||+.+++-..... + .-..++|++....++...+ ..+++.++.... ..+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 45789999999999999999886443221 1 2345888887766655443 446666665321 0011
Q ss_pred ---hHHHHHHHHHHhCCCeEEEEEeCCCC
Q 042806 240 ---SGRARSLRNRLKKEKTILVILDNIWG 265 (390)
Q Consensus 240 ---~~~~~~l~~~l~~~~~~LlVlDdv~~ 265 (390)
......+...+...++-+||+|.+..
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 12233444455555668999999753
No 99
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.98 E-value=0.0026 Score=59.31 Aligned_cols=85 Identities=20% Similarity=0.248 Sum_probs=53.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC------CchHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE------SDSGRARSLR 247 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~------~~~~~~~~l~ 247 (390)
..+++.|+|++|+||||||.+++......+ ..++|++....++.. .+..++...+.. +.......+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 457899999999999999999988765432 358888887766643 245555433211 1122222232
Q ss_pred HHHhCCCeEEEEEeCCCC
Q 042806 248 NRLKKEKTILVILDNIWG 265 (390)
Q Consensus 248 ~~l~~~~~~LlVlDdv~~ 265 (390)
......+.-+||+|.+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 233334445999999853
No 100
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.80 E-value=0.0054 Score=52.95 Aligned_cols=91 Identities=21% Similarity=0.250 Sum_probs=53.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc---C-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETE---K-LFDQVIFVEVSKIQDIRKIQGEIADKLGLTLH----------EESD 239 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~---~-~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~----------~~~~ 239 (390)
...+++|+|++|+|||||++.++...... . .-...+|+.-........ +..+.+.++.... ....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNS 102 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCCh
Confidence 35689999999999999999998743221 1 133577777655444333 3344444443211 0011
Q ss_pred ---hHHHHHHHHHHh-----CCCeEEEEEeCCCC
Q 042806 240 ---SGRARSLRNRLK-----KEKTILVILDNIWG 265 (390)
Q Consensus 240 ---~~~~~~l~~~l~-----~~~~~LlVlDdv~~ 265 (390)
......+...+. ..++-++|+|....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 103 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 112334444444 55668999999854
No 101
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.74 E-value=0.0016 Score=66.92 Aligned_cols=172 Identities=12% Similarity=0.176 Sum_probs=80.2
Q ss_pred cccccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 153 YEACESRMSTLNDILDALKN-------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
...+.|-+...++|.+.+.- ...+-+.++|++|.|||.||+.+++.... .++.++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~-------~f~~v~~---- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKG---- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC-------EEEECCH----
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC-------ceEEecc----
Confidence 34556666666666554431 12455789999999999999999998753 2333322
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCCc--------c--------cccccCCCC--CCCC
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGNL--------D--------FQAVGIPHG--DDRK 281 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--------~--------~~~l~~~l~--~~~~ 281 (390)
.+++ . .+-. .....+..+.+..+...+++|+||+++... . ...+...+. ....
T Consensus 545 ~~l~----s----~~vG-ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 545 PELL----T----MWFG-ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp HHHH----T----TTCS-SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred chhh----c----cccc-hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 2221 1 1111 223455666666666667999999986431 0 111111111 1223
Q ss_pred CcEEEEEecchhhh-hhc-C--CCcceEecCCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCC
Q 042806 282 GCKVLLTARSLDVL-SRK-M--DSQQNFSVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVARECAGL 346 (390)
Q Consensus 282 ~s~IivTtr~~~v~-~~~-~--~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 346 (390)
+.-||.||...... ... . .....+.+..-+.++-.++|+.++.......+.+ ...+++.+.|+
T Consensus 616 ~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~d--l~~la~~t~g~ 682 (806)
T 3cf2_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD--LEFLAKMTNGF 682 (806)
T ss_dssp SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------------
T ss_pred CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHhCCCC
Confidence 33444455433221 111 1 2345778877777777778876664222222111 23455666554
No 102
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.71 E-value=0.0017 Score=55.31 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 159 RMSTLNDILDALKN---PDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 159 R~~~~~~l~~~L~~---~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
|.+.++.|.+.+.. ....+|+|.|+.|+|||||++.+......
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 55566777776654 34679999999999999999999887643
No 103
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.68 E-value=0.0061 Score=58.54 Aligned_cols=88 Identities=19% Similarity=0.313 Sum_probs=53.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCCc-hHH----
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ-DIRKIQGEIADKLGL-------TLHEESD-SGR---- 242 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~l~~~i~~~l~~-------~~~~~~~-~~~---- 242 (390)
..++|+|++|+|||||++.+........ -+..+++.++... ...+++.++...-.. .....+. ...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 3588999999999999999988765432 2445677776543 445555555432110 0111111 111
Q ss_pred -HHHHHHHHh--CCCeEEEEEeCCC
Q 042806 243 -ARSLRNRLK--KEKTILVILDNIW 264 (390)
Q Consensus 243 -~~~l~~~l~--~~~~~LlVlDdv~ 264 (390)
.-.+.+++. .++..|+++||+.
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHH
Confidence 224555554 3677999999994
No 104
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.68 E-value=0.013 Score=53.65 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=37.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADK 229 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~ 229 (390)
...++.|.|.+|+|||||+.+++.....++ ..++|++.. -+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 356899999999999999999987765432 467777654 4566666666543
No 105
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.61 E-value=0.0028 Score=58.39 Aligned_cols=150 Identities=11% Similarity=0.136 Sum_probs=82.0
Q ss_pred cccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 042806 155 ACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTL 234 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~ 234 (390)
.++|++..+..+...+..+ .-+.++|++|+|||+||+.+.+..... ...+.++......++..... ...
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~~~-----~~~i~~~~~~~~~~l~g~~~----~~~ 96 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMDLD-----FHRIQFTPDLLPSDLIGTMI----YNQ 96 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTTCC-----EEEEECCTTCCHHHHHEEEE----EET
T ss_pred ceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhCCC-----eEEEecCCCCChhhcCCcee----ecC
Confidence 5788888888888777653 357799999999999999998876421 23344444444444321110 000
Q ss_pred CCCCchHHHHHHHHHHhCC--CeEEEEEeCCCCCc--ccccccCCC-------C----CCCCCcEEEEEecchh------
Q 042806 235 HEESDSGRARSLRNRLKKE--KTILVILDNIWGNL--DFQAVGIPH-------G----DDRKGCKVLLTARSLD------ 293 (390)
Q Consensus 235 ~~~~~~~~~~~l~~~l~~~--~~~LlVlDdv~~~~--~~~~l~~~l-------~----~~~~~s~IivTtr~~~------ 293 (390)
..... .+..+ ...++++|+++... ....+...+ . .......|+.|+....
T Consensus 97 -~~~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~ 167 (331)
T 2r44_A 97 -HKGNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYP 167 (331)
T ss_dssp -TTTEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCC
T ss_pred -CCCce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCccc
Confidence 00000 00001 01489999986441 111111100 0 0123455666665322
Q ss_pred hhhhcC-CCcceEecCCCCHHHHHHHHHHhhC
Q 042806 294 VLSRKM-DSQQNFSVGVLKEDEAWSLFKKMAG 324 (390)
Q Consensus 294 v~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~ 324 (390)
+..... .....+.+.+.+.++-.+++.+...
T Consensus 168 l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 168 LPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 111111 1223688999999999999988775
No 106
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.60 E-value=0.0025 Score=54.62 Aligned_cols=41 Identities=22% Similarity=0.371 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 161 STLNDILDALKN--PDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 161 ~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.-+++|.+.+.. +...+++|.|+.|+|||||++.+......
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345566666653 45679999999999999999999887653
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.57 E-value=0.0051 Score=57.23 Aligned_cols=92 Identities=21% Similarity=0.273 Sum_probs=54.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc---CCCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCC-
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETE---KLFD-QVIFVEVSKIQDIRKIQGEIADKLGLTLH----------EES- 238 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~---~~f~-~~~wv~v~~~~~~~~l~~~i~~~l~~~~~----------~~~- 238 (390)
...++.|+|++|+|||||+++++...... +... .++|++....+....+ ..+++.++.... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 46799999999999999999998875211 1112 3588887665444433 334544433211 001
Q ss_pred --chHHHHHHHHHHhC-----CCeEEEEEeCCCCC
Q 042806 239 --DSGRARSLRNRLKK-----EKTILVILDNIWGN 266 (390)
Q Consensus 239 --~~~~~~~l~~~l~~-----~~~~LlVlDdv~~~ 266 (390)
....+..+...+.. .++-+||+|.+...
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 11123334444443 46689999998654
No 108
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.55 E-value=0.0038 Score=58.26 Aligned_cols=99 Identities=16% Similarity=0.160 Sum_probs=53.2
Q ss_pred HHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhcC-CCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCchH
Q 042806 165 DILDALKN-PDVNMLGIYGMGGIVKTTLAKEVARKAETEK-LFDQVIFVEVSKIQ-DIRKIQGEIADKLGLTLHEESDSG 241 (390)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~-~f~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~~~ 241 (390)
+.++.+.. .....++|+|++|+|||||++.+.+...... .+. ++++.++... ...++.+.+-..+-....+.+...
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~ 241 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASR 241 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHH
Confidence 34454443 3456899999999999999999887654321 233 4467777543 223332222000000111111111
Q ss_pred ------HHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 242 ------RARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 242 ------~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
..-.+.+++. .++.+||++||+.
T Consensus 242 r~~~a~~alt~AEyfrd~G~dVLil~DslT 271 (422)
T 3ice_A 242 HVQVAEMVIEKAKRLVEHKKDVIILLDSIT 271 (422)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEeCch
Confidence 1112334443 4677999999984
No 109
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.52 E-value=0.009 Score=57.50 Aligned_cols=98 Identities=18% Similarity=0.277 Sum_probs=63.1
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------C--
Q 042806 166 ILDALKN-PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ-DIRKIQGEIADKLGLT-------L-- 234 (390)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~l~~~i~~~l~~~-------~-- 234 (390)
.++.|.. .+-.-++|+|.+|+|||+|+..+.+.... .+-+.++|+.++... ...+++.++...-... .
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 3444432 23456889999999999999999887532 235678888888655 4567777766542221 0
Q ss_pred -----CCCCc------hHHHHHHHHHHhC--CCeEEEEEeCCC
Q 042806 235 -----HEESD------SGRARSLRNRLKK--EKTILVILDNIW 264 (390)
Q Consensus 235 -----~~~~~------~~~~~~l~~~l~~--~~~~LlVlDdv~ 264 (390)
.+.+. ....-.+.+++.+ ++.+||++||+.
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 01111 1123456677766 677999999984
No 110
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.48 E-value=0.0015 Score=60.55 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=35.1
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...++|.+..+..+...+..+...-+.|+|++|+|||+||+.+.+...
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred chhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 456888877655554444333334488999999999999999998764
No 111
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.48 E-value=0.019 Score=54.84 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.+.+|.++|++|+||||++..++.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999887764
No 112
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.47 E-value=0.0063 Score=53.29 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
...+++|.|+.|+|||||++.+...
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999843
No 113
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.47 E-value=0.0017 Score=53.89 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.+|.|.|++|+||||+++.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999988764
No 114
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.46 E-value=0.024 Score=54.40 Aligned_cols=99 Identities=17% Similarity=0.288 Sum_probs=62.7
Q ss_pred HHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC---------
Q 042806 165 DILDALKN-PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ-DIRKIQGEIADKLGLT--------- 233 (390)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~l~~~i~~~l~~~--------- 233 (390)
+.++.|.. .+-.-++|+|.+|+|||+|+..+.+.... .+-+.++++.++... ...+++.++...-...
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtv 220 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVA 220 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEE
Confidence 34455543 24456889999999999999999887532 234667888887654 4566777776553222
Q ss_pred ----CCCCCch------HHHHHHHHHHhC--CCeEEEEEeCCC
Q 042806 234 ----LHEESDS------GRARSLRNRLKK--EKTILVILDNIW 264 (390)
Q Consensus 234 ----~~~~~~~------~~~~~l~~~l~~--~~~~LlVlDdv~ 264 (390)
..+.+.. ...-.+.+++.+ ++.+||++||+.
T Consensus 221 vV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 221 LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0111111 123355566654 677999999984
No 115
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.45 E-value=0.013 Score=51.12 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=33.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEI 226 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i 226 (390)
...++.|.|++|+|||||+.+++...... =..++|++... +..++...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~--~~~~~~~~~ 70 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE--HPVQVRQNM 70 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS--CHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHHH
Confidence 35689999999999999999887765432 23467766543 345554443
No 116
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.43 E-value=0.0082 Score=51.34 Aligned_cols=75 Identities=23% Similarity=0.131 Sum_probs=44.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh----------CCCCCCCCchHHHHHH
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKL----------GLTLHEESDSGRARSL 246 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l----------~~~~~~~~~~~~~~~l 246 (390)
+|.|.|++|+||+|.|+.+..... |. .+ +..+++++.+..- -......++.-....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g----~~---~i------stGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG----FV---HI------STGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC----CE---EE------EHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC----Ce---EE------cHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 578999999999999999998764 21 22 2345554432221 1111222344445566
Q ss_pred HHHHhCCCeEEEEEeCCCCC
Q 042806 247 RNRLKKEKTILVILDNIWGN 266 (390)
Q Consensus 247 ~~~l~~~~~~LlVlDdv~~~ 266 (390)
.+.+.... . +|||++-..
T Consensus 69 ~~~l~~~~-~-~ilDGfPRt 86 (206)
T 3sr0_A 69 EEVFPKHG-N-VIFDGFPRT 86 (206)
T ss_dssp HHHCCSSS-C-EEEESCCCS
T ss_pred HHhhccCC-c-eEecCCchh
Confidence 66776555 2 688998544
No 117
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.42 E-value=0.0019 Score=53.07 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.+|+|.|++|+||||+++.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988764
No 118
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.40 E-value=0.0019 Score=53.10 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEV 195 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v 195 (390)
.+|+|.|++|+||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 119
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.35 E-value=0.0015 Score=56.65 Aligned_cols=110 Identities=14% Similarity=0.006 Sum_probs=59.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CchHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE---SDSGRARSLRNRL 250 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~l~~~l 250 (390)
...++.++|+.|+||||++..+.+.....+ .. ++.+..... .. ....+++.++...+.. ........+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g-~k-Vli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD-VK-YLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT-CC-EEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC-CE-EEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 356889999999999999999988876532 33 333333221 11 2223445555433221 1112222233223
Q ss_pred hCCCeEEEEEeCCCCC--cccccccCCCCCCCCCcEEEEEecc
Q 042806 251 KKEKTILVILDNIWGN--LDFQAVGIPHGDDRKGCKVLLTARS 291 (390)
Q Consensus 251 ~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~IivTtr~ 291 (390)
..++.-+||+|.++.. +.++.+.. +. +.+..||+|.+.
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~--~~gi~Vil~Gl~ 125 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LA--ENGFVVIISGLD 125 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HH--HTTCEEEEECCS
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HH--hCCCeEEEEecc
Confidence 3344359999999753 22222221 11 126789999983
No 120
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.35 E-value=0.016 Score=55.22 Aligned_cols=29 Identities=24% Similarity=0.132 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
.+.+|.++|++|+||||++..++......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999999999877543
No 121
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.32 E-value=0.0085 Score=67.07 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=56.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHE------ESDSGRARSLR 247 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~ 247 (390)
..+.+.|+|++|+|||+||.++.......+ ..++|+++...++... ++.++.+.+. .+.......+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G--~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 567899999999999999999988765431 2477888777666544 4555533211 12233444555
Q ss_pred HHHhCCCeEEEEEeCCC
Q 042806 248 NRLKKEKTILVILDNIW 264 (390)
Q Consensus 248 ~~l~~~~~~LlVlDdv~ 264 (390)
...+..++.+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 55555666899999984
No 122
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.29 E-value=0.0023 Score=53.42 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.++++|+|++|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 123
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.29 E-value=0.0024 Score=52.93 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVAR 197 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~ 197 (390)
.+|.|.|++|+||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 124
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.27 E-value=0.014 Score=49.55 Aligned_cols=84 Identities=19% Similarity=0.135 Sum_probs=47.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC------CchHHHHHHHHHH
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE------SDSGRARSLRNRL 250 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~------~~~~~~~~l~~~l 250 (390)
.|+|-|.-|+||||.++.+.+.+...+ +. +++..-.......+..+.++..-....... ........+...|
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g-~~-v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L 79 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG-KK-VILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-CC-EEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-Cc-EEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999987643 33 344444444444555555543322110000 1111233455556
Q ss_pred hCCCeEEEEEeCCC
Q 042806 251 KKEKTILVILDNIW 264 (390)
Q Consensus 251 ~~~~~~LlVlDdv~ 264 (390)
..++ .+|.|-..
T Consensus 80 ~~g~--~Vi~DRy~ 91 (197)
T 3hjn_A 80 SEGY--AVLLDRYT 91 (197)
T ss_dssp TTTC--EEEEESCH
T ss_pred HCCC--eEEecccc
Confidence 5554 67888653
No 125
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.26 E-value=0.024 Score=54.20 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=25.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
.+++|.++|.+|+||||++..+......+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999999887654
No 126
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.25 E-value=0.0029 Score=53.73 Aligned_cols=27 Identities=37% Similarity=0.338 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...+|.|+|++|+||||+++.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999998763
No 127
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.23 E-value=0.0024 Score=53.74 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
|.|+|+||+|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5688999999999999999987753
No 128
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.23 E-value=0.0027 Score=53.26 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
...+++|.|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3568999999999999999999765
No 129
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.20 E-value=0.0036 Score=53.15 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 172 NPDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 172 ~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.....+|+|.|++|+|||||++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999998875
No 130
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.19 E-value=0.0027 Score=52.39 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988753
No 131
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.18 E-value=0.0032 Score=53.89 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...+|+|+|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999987753
No 132
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.17 E-value=0.0035 Score=52.61 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..+|.|.|++|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 133
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.17 E-value=0.0031 Score=52.84 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.+|.|.|++|+||||+++.+......
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998753
No 134
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.17 E-value=0.0033 Score=52.50 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.+.|.|+|++|+||||+++.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999988763
No 135
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.16 E-value=0.0034 Score=53.30 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
....+|+|.|+.|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999999998765
No 136
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.14 E-value=0.014 Score=50.99 Aligned_cols=50 Identities=24% Similarity=0.291 Sum_probs=32.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEI 226 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i 226 (390)
...++.|.|.+|+|||+||.+++.....+. -..++|++.. .+..++...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESS--SCHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeeccc--CCHHHHHHHH
Confidence 356899999999999999999765532221 2235555544 3556665554
No 137
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.13 E-value=0.0034 Score=52.54 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.+|.|.|++|+||||+++.+......
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999987653
No 138
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.12 E-value=0.003 Score=53.66 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..+|+|.|+.|+||||+++.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 139
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.11 E-value=0.12 Score=47.53 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=36.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
...++.|.|.+|+|||||+.+++...... =..++|++. .-+..++...++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl--Ems~~ql~~Rlls 95 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL--EMSAEQLALRALS 95 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES--SSCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC--CCCHHHHHHHHHH
Confidence 34688999999999999999998886542 134566554 4466677666644
No 140
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.10 E-value=0.0052 Score=53.04 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=28.3
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 164 NDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 164 ~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+.+...+.......|+|+|.+|+|||||+..+.....
T Consensus 27 ~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 27 DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3344444445678899999999999999999998764
No 141
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.06 E-value=0.0033 Score=53.57 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..++|+|.|++|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999998876
No 142
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.05 E-value=0.0032 Score=52.86 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
++++|.|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999987754
No 143
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.05 E-value=0.0037 Score=51.99 Aligned_cols=26 Identities=38% Similarity=0.460 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.++|.|.|++|+||||+++.+.....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46788999999999999999987763
No 144
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.04 E-value=0.0042 Score=52.74 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..+++|.|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 145
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.02 E-value=0.069 Score=51.97 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.+++|+|+|.+|+||||++..+......
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999999999987654
No 146
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.97 E-value=0.0069 Score=54.70 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+|.|.|++|+||||+++.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 147
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.96 E-value=0.0074 Score=56.41 Aligned_cols=46 Identities=20% Similarity=0.096 Sum_probs=35.1
Q ss_pred cccchhHHHHHHHHHhc-------------C--CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 155 ACESRMSTLNDILDALK-------------N--PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~-------------~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.++|.+..+..+...+. . .....+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35777777777776662 1 1345688999999999999999998873
No 148
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.94 E-value=0.0051 Score=51.70 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...+|+|.|++|+||||+++.+.....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999988763
No 149
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.93 E-value=0.005 Score=52.19 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..++++|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987653
No 150
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.93 E-value=0.0058 Score=51.10 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
...+|.|.|++|+||||+++.+......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999988764
No 151
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.92 E-value=0.094 Score=48.10 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=25.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
+...+++|+|+.|+||||+++.+......
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999887654
No 152
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.91 E-value=0.0049 Score=51.69 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..+|+|.|++|+||||+++.+.....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999987653
No 153
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.91 E-value=0.0046 Score=54.75 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
++|.|.|++|+||||||+.+.....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988753
No 154
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.90 E-value=0.037 Score=50.30 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=29.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVS 214 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~ 214 (390)
...++.|+|++|+||||++..++......+ . .+.++...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g-~-kV~lv~~D 141 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG-K-SVVLAAAD 141 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT-C-CEEEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC-C-EEEEEccc
Confidence 457999999999999999999998876431 2 24445443
No 155
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.90 E-value=0.024 Score=51.82 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.+.+|+|.|+.|+|||||++.+..-..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456899999999999999999877654
No 156
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.90 E-value=0.0054 Score=52.88 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+.++|.|.|++|+||||.|+.+.....
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999999998764
No 157
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.90 E-value=0.0053 Score=52.13 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|.|+.|+||||+++.+....
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998765
No 158
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.90 E-value=0.043 Score=52.72 Aligned_cols=52 Identities=13% Similarity=-0.003 Sum_probs=36.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
...++.|.|.+|+|||||+.+++........ ..++|++.. -+..++...+..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECC--CCHHHHHHHHHH
Confidence 3468999999999999999999987654211 246666554 456677766543
No 159
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.89 E-value=0.0045 Score=51.23 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+.|.|.|++|+||||+++.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3588999999999999999988764
No 160
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.89 E-value=0.005 Score=52.13 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 161
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.89 E-value=0.0055 Score=52.65 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 162 TLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..+.+...+.....++++|+|.+|+|||||+..+.....
T Consensus 17 ~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 17 LAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 334444444344678999999999999999999988764
No 162
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.88 E-value=0.0071 Score=51.35 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=27.3
Q ss_pred HHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 164 NDILDALKN-PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 164 ~~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..+..++.+ ++...+.|+|++|+||||+|..+++...
T Consensus 46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334444443 2334789999999999999999998864
No 163
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.87 E-value=0.0055 Score=51.99 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
+..+|+|.|+.|+||||+++.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998765
No 164
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.87 E-value=0.0041 Score=52.83 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998754
No 165
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.87 E-value=0.0058 Score=50.49 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..+|+|.|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 166
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.86 E-value=0.048 Score=52.54 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=35.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~ 227 (390)
...++.|.|.+|+|||||+.+++........ ..++|++.. .+..++...+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESS--SCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECC--CCHHHHHHHHH
Confidence 3468999999999999999999988654321 246666543 34556655543
No 167
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.85 E-value=0.0057 Score=51.01 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.++|+|+.|+|||||++.+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988765
No 168
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.85 E-value=0.0058 Score=52.04 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=23.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
..+|+|.|++|+||||+++.+......
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 357999999999999999999988754
No 169
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.84 E-value=0.0056 Score=51.60 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..+|+|.|++|+||||+++.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988764
No 170
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.83 E-value=0.0077 Score=54.45 Aligned_cols=54 Identities=7% Similarity=-0.063 Sum_probs=34.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcC-CCCeEEEEEeCCCCCHHHHHHHH
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAETEK-LFDQVIFVEVSKIQDIRKIQGEI 226 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~-~f~~~~wv~v~~~~~~~~l~~~i 226 (390)
+...+|+|.|+.|+|||||++.+.......+ .......|+....+-.......+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l 83 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKL 83 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHH
Confidence 4567899999999999999999988765421 12334444554433333334444
No 171
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.82 E-value=0.037 Score=52.68 Aligned_cols=28 Identities=32% Similarity=0.274 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
...++.++|++|+||||++..++.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999988764
No 172
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.82 E-value=0.0067 Score=50.04 Aligned_cols=34 Identities=24% Similarity=0.141 Sum_probs=26.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeE
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQV 208 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~ 208 (390)
..+++.|.|+.|+|||||+..+......+ .+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~-g~~v~ 36 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE-GWRVG 36 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc-CCeee
Confidence 35789999999999999999999887643 34433
No 173
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.81 E-value=0.0053 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVAR 197 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~ 197 (390)
.+++|.|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 174
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.81 E-value=0.0039 Score=60.81 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=36.2
Q ss_pred cccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 155 ACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.++|++..++.+...+..+ .-+.|+|++|+|||+||+.+.+...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 5788888888887776644 3578999999999999999988764
No 175
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.81 E-value=0.0041 Score=51.73 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=19.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..+|.|.|++|+||||+++.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987754
No 176
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.80 E-value=0.0059 Score=53.67 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.+.+|+|.|+.|+|||||++.+.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999997663
No 177
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.80 E-value=0.0071 Score=50.56 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
+...|.|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999886
No 178
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.79 E-value=0.0058 Score=52.21 Aligned_cols=27 Identities=37% Similarity=0.358 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...+|+|.|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988654
No 179
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.79 E-value=0.0063 Score=50.76 Aligned_cols=26 Identities=23% Similarity=0.142 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...|+|.|++|+||||+++.+.....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999987653
No 180
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.77 E-value=0.0051 Score=51.28 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
++|.|.|++|+||||+++.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988764
No 181
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.75 E-value=0.0056 Score=50.38 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.+|.|.|+.|+||||+++.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 182
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.74 E-value=0.017 Score=48.75 Aligned_cols=116 Identities=18% Similarity=0.095 Sum_probs=60.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC---CCCHHHHHHHHH---HHhC--CCCCCCC-------c
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK---IQDIRKIQGEIA---DKLG--LTLHEES-------D 239 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~---~~~~~~l~~~i~---~~l~--~~~~~~~-------~ 239 (390)
...|.|++..|.||||+|--..-..-.. .+. +.++.+-. ......++..+. ..++ ..+.... .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~-G~r-V~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH-GKN-VGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT-TCC-EEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC-CCe-EEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 3567777778899999999988876543 243 44444433 223333433331 0000 1111111 0
Q ss_pred hHHHHHHHHHHhCCCeEEEEEeCCCC-----CcccccccCCCCCCCCCcEEEEEecch
Q 042806 240 SGRARSLRNRLKKEKTILVILDNIWG-----NLDFQAVGIPHGDDRKGCKVLLTARSL 292 (390)
Q Consensus 240 ~~~~~~l~~~l~~~~~~LlVlDdv~~-----~~~~~~l~~~l~~~~~~s~IivTtr~~ 292 (390)
......+.+.+.+++-=|||||++-. ....+.+...+........||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 11223445555555534999999832 222233333333334566899999974
No 183
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.72 E-value=0.0068 Score=49.71 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...+|.|.|+.|+||||+++.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999988764
No 184
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.71 E-value=0.0067 Score=50.74 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..+|+|.|+.|+||||+++.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988753
No 185
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.71 E-value=0.011 Score=55.47 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998773
No 186
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.70 E-value=0.0081 Score=50.89 Aligned_cols=27 Identities=26% Similarity=0.133 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...+|.|.|++|+||||+++.+.....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999988763
No 187
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.69 E-value=0.0068 Score=53.86 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..+|.|.|++|+||||+++.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 188
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.68 E-value=0.0051 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=19.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVA 196 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~ 196 (390)
...+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999643
No 189
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.68 E-value=0.068 Score=46.26 Aligned_cols=25 Identities=28% Similarity=0.145 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.-++|.|++|+||||+++.+.....
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999988764
No 190
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.67 E-value=0.0057 Score=57.02 Aligned_cols=51 Identities=18% Similarity=0.038 Sum_probs=35.3
Q ss_pred HHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCCeEEEEEeCCC
Q 042806 165 DILDALKN-PDVNMLGIYGMGGIVKTTLAKEVARKAETE-KLFDQVIFVEVSKI 216 (390)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~-~~f~~~~wv~v~~~ 216 (390)
+.++.+.. .+-.-++|+|.+|+|||+|+..+.+..... ..+. ++++.++..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 45666654 345578899999999999999998876532 1233 356777654
No 191
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.66 E-value=0.0076 Score=51.39 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=26.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQ 207 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~ 207 (390)
..+|+|.|+.|+||||+++.+....... +++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999887542 4554
No 192
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.66 E-value=0.008 Score=51.32 Aligned_cols=33 Identities=9% Similarity=0.059 Sum_probs=26.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQ 207 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~ 207 (390)
+..+|+|.|+.|+||||+++.+....... +++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 35689999999999999999999887543 3554
No 193
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.65 E-value=0.0071 Score=52.21 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.+|+|.|+.|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 194
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.65 E-value=0.0075 Score=50.97 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
++..+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999999875
No 195
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.64 E-value=0.0068 Score=52.28 Aligned_cols=27 Identities=22% Similarity=0.073 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
....|.|.|++|+||||+++.+.....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346789999999999999999988764
No 196
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.64 E-value=0.013 Score=54.12 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=25.1
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 172 NPDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 172 ~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.+....|.|+|++|+||||+++.++.....
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 455667999999999999999999887653
No 197
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.64 E-value=0.0069 Score=52.35 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...+++|+|+.|+|||||++.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 456899999999999999999987654
No 198
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.62 E-value=0.0071 Score=51.62 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998765
No 199
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.61 E-value=0.051 Score=49.19 Aligned_cols=87 Identities=21% Similarity=0.261 Sum_probs=49.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----CCCchHHHHHHHHH
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ-DIRKIQGEIADKLGLTLH----EESDSGRARSLRNR 249 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~~~l~~~ 249 (390)
..+++++|++|+||||++..+.......+ . .+.++...... ...+.+.......+...- ..+.........+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g-~-~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG-F-KVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT-C-CEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 57899999999999999999998876432 2 35555554322 223333444555544211 12233333444455
Q ss_pred HhCCCeEEEEEeCC
Q 042806 250 LKKEKTILVILDNI 263 (390)
Q Consensus 250 l~~~~~~LlVlDdv 263 (390)
+...+.=++++|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 54223127888865
No 200
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.60 E-value=0.024 Score=47.50 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
+|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988743
No 201
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.60 E-value=0.0073 Score=52.34 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
....|.|.|++|+||||+++.+....
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999998865
No 202
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.59 E-value=0.0063 Score=52.54 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998755
No 203
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.57 E-value=0.0014 Score=68.01 Aligned_cols=152 Identities=12% Similarity=0.147 Sum_probs=80.7
Q ss_pred cccccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 153 YEACESRMSTLNDILDALKN-------------PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
...+.|-+...+.|.+.+.- .....+.++|++|+|||+||+.++...... |- .+..+...+
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~--~i---~v~~~~l~~- 549 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN--FI---SIKGPELLT- 549 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC--CC---CCCCSSSTT-
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC--EE---EEechHhhh-
Confidence 34566666666666665531 124568899999999999999999987532 21 111111100
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCC----------------cccccccCCCCC--CCC
Q 042806 220 RKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKTILVILDNIWGN----------------LDFQAVGIPHGD--DRK 281 (390)
Q Consensus 220 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~--~~~ 281 (390)
.... .....+..+.+......+++++||+++.. .....+...+.. ...
T Consensus 550 -------------~~~g-~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~ 615 (806)
T 1ypw_A 550 -------------MWFG-ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp -------------CCTT-TSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------
T ss_pred -------------hhcC-ccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccC
Confidence 0000 11223344444444444578999998531 011223222221 123
Q ss_pred CcEEEEEecchh-hhhhcC---CCcceEecCCCCHHHHHHHHHHhhC
Q 042806 282 GCKVLLTARSLD-VLSRKM---DSQQNFSVGVLKEDEAWSLFKKMAG 324 (390)
Q Consensus 282 ~s~IivTtr~~~-v~~~~~---~~~~~~~l~~L~~~ea~~lf~~~~~ 324 (390)
+..||.||.... +..... .....+.+...+.++-.++|+.++.
T Consensus 616 ~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTS
T ss_pred CeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhc
Confidence 345666665432 211111 1224777888888888888887763
No 204
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.56 E-value=0.0085 Score=51.59 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...|.|.|++|+||||+++.+.....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999988763
No 205
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.52 E-value=0.0049 Score=52.67 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.+|+|.|+.|+||||+++.+......
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999887653
No 206
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.51 E-value=0.009 Score=52.70 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..+.+|+|.|+.|+||||+++.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567899999999999999999988754
No 207
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.51 E-value=0.008 Score=49.04 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
....+++|.|+.|+|||||++.+..-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999999999999999998876
No 208
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.51 E-value=0.0091 Score=48.82 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.|.|.|+.|+||||+++.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988764
No 209
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.50 E-value=0.0088 Score=50.08 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 210
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.50 E-value=0.0082 Score=51.14 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+|+|.|++|+||||+++.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999997653
No 211
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.49 E-value=0.0081 Score=50.98 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVAR 197 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~ 197 (390)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 212
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.48 E-value=0.069 Score=52.15 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=36.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~ 227 (390)
...++.|.|.+|+|||||+.+++........ ..++|++.. -+..++...++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g-~~vl~~s~E--~s~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMG-KKVGLAMLE--ESVEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSC-CCEEEEESS--SCHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcC-CcEEEEecc--CCHHHHHHHHH
Confidence 3468899999999999999999988654311 246666553 35666666654
No 213
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.48 E-value=0.012 Score=52.06 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...+|.|.|++|+||||+++.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999988753
No 214
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.48 E-value=0.01 Score=54.25 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=31.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK 215 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 215 (390)
++.++|+|+|-|||||||.+-.+...+...+ +. +.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G-kk-VllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG-KR-VLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT-CC-EEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC-Ce-EEEEecCC
Confidence 4678999999999999999999988876532 33 55566654
No 215
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.42 E-value=0.012 Score=53.51 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
...+++|+|++|+|||||++.+......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4679999999999999999999877653
No 216
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.42 E-value=0.011 Score=52.34 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...+|+|.|+.|+||||+++.+.....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999987653
No 217
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.40 E-value=0.032 Score=61.69 Aligned_cols=84 Identities=20% Similarity=0.227 Sum_probs=61.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC------CchHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE------SDSGRARSLR 247 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~------~~~~~~~~l~ 247 (390)
+-++|-|+|+.|+||||||.++....... =...+|+.+.+..+..- ++.+|.+.+.. .....+..+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 45899999999999999999999775543 24578888887777542 77888765432 2234455566
Q ss_pred HHHhCCCeEEEEEeCCC
Q 042806 248 NRLKKEKTILVILDNIW 264 (390)
Q Consensus 248 ~~l~~~~~~LlVlDdv~ 264 (390)
..++.+..-+||+|-|-
T Consensus 1503 ~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHcCCCCEEEEccHH
Confidence 66677776799999884
No 218
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.39 E-value=0.0093 Score=54.50 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
....+++|.|+.|+|||||++.+..-...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 35679999999999999999999887653
No 219
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.39 E-value=0.043 Score=63.52 Aligned_cols=138 Identities=11% Similarity=0.055 Sum_probs=75.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKT 255 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 255 (390)
+-+.++|++|+|||++|+.+..... .+ ....++++...+...+...+...+........... .--..+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~------~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTL------LPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEE------EEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccc------cCCCCCce
Confidence 4577999999999999988776542 23 35667888877877777766665532210000000 00002345
Q ss_pred EEEEEeCCCCC--cc------cccccCCCC-----CCC-------CCcEEEEEecchh------hhhhcCCCcceEecCC
Q 042806 256 ILVILDNIWGN--LD------FQAVGIPHG-----DDR-------KGCKVLLTARSLD------VLSRKMDSQQNFSVGV 309 (390)
Q Consensus 256 ~LlVlDdv~~~--~~------~~~l~~~l~-----~~~-------~~s~IivTtr~~~------v~~~~~~~~~~~~l~~ 309 (390)
+++.+||+.-. +. .+.+...+. +.. .+..+|.++.... +..+...-...+.+..
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 89999997421 11 111111110 001 1234555554331 1111122235788999
Q ss_pred CCHHHHHHHHHHhh
Q 042806 310 LKEDEAWSLFKKMA 323 (390)
Q Consensus 310 L~~~ea~~lf~~~~ 323 (390)
.+.++-..+|....
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99998888887765
No 220
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.37 E-value=0.011 Score=51.90 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.+..|+|.|++|+||||+++.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998765
No 221
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.36 E-value=0.011 Score=52.02 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 222
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.35 E-value=0.01 Score=50.28 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..+|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998876
No 223
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.35 E-value=0.01 Score=50.82 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.|+|.|++|+||||+++.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987753
No 224
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.35 E-value=0.073 Score=48.09 Aligned_cols=87 Identities=21% Similarity=0.298 Sum_probs=47.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC-HHHHHHHHHHHhCCCCC----CCCchHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQD-IRKIQGEIADKLGLTLH----EESDSGRARSLRN 248 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~l~~~i~~~l~~~~~----~~~~~~~~~~l~~ 248 (390)
...+++|+|++|+||||++..++......+ ..+.++....... ...-+.......+...- ..+...+......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999998876431 2344444432211 11112334444443221 1123333333333
Q ss_pred HHh-CCCeEEEEEeCC
Q 042806 249 RLK-KEKTILVILDNI 263 (390)
Q Consensus 249 ~l~-~~~~~LlVlDdv 263 (390)
.+. .+. =++++|--
T Consensus 175 ~~~~~~~-D~viiDtp 189 (295)
T 1ls1_A 175 KARLEAR-DLILVDTA 189 (295)
T ss_dssp HHHHHTC-CEEEEECC
T ss_pred HHHhCCC-CEEEEeCC
Confidence 332 323 47888976
No 225
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.35 E-value=0.036 Score=61.30 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=56.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC------CchHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEE------SDSGRARSLR 247 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~------~~~~~~~~l~ 247 (390)
..+++.|+|++|+||||||.+++...... =..++|++.....+.. .++.++.+.+.. +.......+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 46789999999999999999998886543 2357888877766543 256666543321 2223333343
Q ss_pred HHHhCCCeEEEEEeCCCCC
Q 042806 248 NRLKKEKTILVILDNIWGN 266 (390)
Q Consensus 248 ~~l~~~~~~LlVlDdv~~~ 266 (390)
..+...+.-+||+|-+...
T Consensus 455 ~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHhcCCCEEEECCHHHh
Confidence 3344445569999998643
No 226
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.30 E-value=0.0092 Score=50.73 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVAR 197 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~ 197 (390)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999965
No 227
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.29 E-value=0.059 Score=51.73 Aligned_cols=51 Identities=16% Similarity=0.099 Sum_probs=35.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
...++.|.|.+|+|||||+.+++.....++ ..++|++.. -+..++...+..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlE--ms~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSS--SCTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECC--CCHHHHHHHHHH
Confidence 346899999999999999999998875431 245665443 344555555443
No 228
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.28 E-value=0.013 Score=50.18 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999988775
No 229
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.24 E-value=0.021 Score=54.39 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=58.8
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCC-eEEEEEeCCC-CCHHHHHHHHHHHhCC-------CC
Q 042806 166 ILDALKN-PDVNMLGIYGMGGIVKTTLAKEVARKAETE-KLFD-QVIFVEVSKI-QDIRKIQGEIADKLGL-------TL 234 (390)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~-~~f~-~~~wv~v~~~-~~~~~l~~~i~~~l~~-------~~ 234 (390)
.++.|.. .+-.-++|.|.+|+|||+|+.++.+..... ++-+ .++++.++.. ....+++..+...-.. ..
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~at 220 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNL 220 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEEC
Confidence 4444432 223346789999999999999998876531 0111 6777777754 3556666665443111 11
Q ss_pred CCCCchH------HHHHHHHHHhC--CCeEEEEEeCCC
Q 042806 235 HEESDSG------RARSLRNRLKK--EKTILVILDNIW 264 (390)
Q Consensus 235 ~~~~~~~------~~~~l~~~l~~--~~~~LlVlDdv~ 264 (390)
.+.+... ..-.+.+++.+ ++.+|+++||+.
T Consensus 221 sd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 221 ANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1112111 22356677763 677999999984
No 230
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.22 E-value=0.013 Score=48.54 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=23.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.+++.|.|+.|+|||||+..+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987653
No 231
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.21 E-value=0.012 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.|+|.|++|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 232
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.15 E-value=0.031 Score=48.29 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=35.9
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhhh-cCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042806 172 NPDVNMLGIYGMGGIVKTTLAKEVARKAET-EKLFDQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 172 ~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~-~~~f~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
.....+|.|.|+.|+||||+++.+.+.... . .+.......-.......+.++.++.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~-g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIY-GVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcc-CceeeEeeeCCCCChHHHHHHHHHh
Confidence 345678999999999999999999998865 3 2444432323333233444444443
No 233
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.13 E-value=0.044 Score=47.76 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=29.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVE 212 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~ 212 (390)
..+|.|.|+.|+||||+++.+....... ++.......
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeec
Confidence 4689999999999999999999988653 465344443
No 234
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.11 E-value=0.012 Score=49.51 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+++|+|+.|+|||||++.+.....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 688999999999999999988764
No 235
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.10 E-value=0.013 Score=51.38 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.. .+++|+|+.|+|||||++.+.--.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 789999999999999999997643
No 236
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.10 E-value=0.048 Score=61.18 Aligned_cols=85 Identities=20% Similarity=0.269 Sum_probs=55.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHE------ESDSGRARSLR 247 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~ 247 (390)
...++.|+|++|+|||||+.+++......+ ..++|++.....+.. .++.++.+.+. .+.......+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 457899999999999999999998875432 357888777665543 25666654321 12223333333
Q ss_pred HHHhCCCeEEEEEeCCCC
Q 042806 248 NRLKKEKTILVILDNIWG 265 (390)
Q Consensus 248 ~~l~~~~~~LlVlDdv~~ 265 (390)
........-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 333344556999999853
No 237
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.09 E-value=0.013 Score=48.48 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
++++|+|+.|+|||||++.+......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999887664
No 238
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.08 E-value=0.051 Score=46.58 Aligned_cols=53 Identities=17% Similarity=0.128 Sum_probs=34.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIAD 228 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~ 228 (390)
..+|++.|+.|+||||+++.+.+..... ++..+.+..-.......+.++.++.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 3579999999999999999999988754 3533343333333334444555443
No 239
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.07 E-value=0.05 Score=46.74 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=24.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
..+|.+.|+.|+||||+++.+.+....
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999998763
No 240
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.07 E-value=0.016 Score=48.02 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
...+|.|.|+.|+||||+++.+......
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3467899999999999999999887643
No 241
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.06 E-value=0.047 Score=49.20 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=28.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEV 213 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v 213 (390)
...+++|.|++|+|||||++.++......... .+.|+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~-~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK-KVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCC-CEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCC-eEEEEeC
Confidence 45689999999999999999998876543111 3556554
No 242
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.04 E-value=0.009 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=16.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH-HHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVA-RKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~-~~~ 199 (390)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 543
No 243
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.01 E-value=0.014 Score=50.97 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
...+++|+|+.|+|||||++.+.--
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568999999999999999998654
No 244
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.00 E-value=0.016 Score=50.43 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..+|+|.|++|+||||+++.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987764
No 245
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.99 E-value=0.016 Score=52.66 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
...+++|+|+.|+||||+++.++.....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999887653
No 246
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.97 E-value=0.018 Score=50.05 Aligned_cols=26 Identities=23% Similarity=0.061 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...|.|.|+.|+||||+++.+.....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988764
No 247
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.96 E-value=0.035 Score=51.68 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=29.1
Q ss_pred HHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 163 LNDILDALK--NPDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 163 ~~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...++..+. .++..+|+|+|.+|+|||||+..+.....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334444443 35678999999999999999999987764
No 248
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.96 E-value=0.011 Score=51.13 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
...+++|+|+.|+|||||++.+.--
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998654
No 249
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.96 E-value=0.015 Score=52.73 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.++|+|.||.|+|||||+..++....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 46889999999999999999987653
No 250
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.94 E-value=0.016 Score=55.45 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=33.8
Q ss_pred cccchhHHHHHHHHHhcC--------------CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 155 ACESRMSTLNDILDALKN--------------PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 155 ~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.++|.+..+..+...+.. ...+-|.++|++|+||||+|+.++....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467766666666554421 1245688999999999999999998874
No 251
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.93 E-value=0.072 Score=46.22 Aligned_cols=56 Identities=18% Similarity=0.109 Sum_probs=30.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-hhcCCC-CeEEEEEeCCCCCHHHHHHHHHHHhC
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA-ETEKLF-DQVIFVEVSKIQDIRKIQGEIADKLG 231 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~-~~~~~f-~~~~wv~v~~~~~~~~l~~~i~~~l~ 231 (390)
+.+.|.|+.|+||||+...+.-.. ...... ...+.+.........++...+...++
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~ 134 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERG 134 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTT
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhc
Confidence 578899999999998776665442 221111 22333333333333444455554443
No 252
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.92 E-value=0.017 Score=49.48 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVAR 197 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~ 197 (390)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999965
No 253
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.92 E-value=0.012 Score=50.46 Aligned_cols=24 Identities=29% Similarity=0.115 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
..+++|.|+.|+|||||++.+.--
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999866
No 254
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.90 E-value=0.038 Score=49.05 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
....+++|+|+.|+|||||++.+.....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3456899999999999999999987654
No 255
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.90 E-value=0.021 Score=54.36 Aligned_cols=99 Identities=19% Similarity=0.269 Sum_probs=58.1
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhc--------CCCC-eEEEEEeCCC-CCHHHHHHHHHHHhCC--
Q 042806 166 ILDALKN-PDVNMLGIYGMGGIVKTTLAKEVARKAETE--------KLFD-QVIFVEVSKI-QDIRKIQGEIADKLGL-- 232 (390)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~--------~~f~-~~~wv~v~~~-~~~~~l~~~i~~~l~~-- 232 (390)
.++.|.. .+-.-++|.|.+|+|||+|+.++.+..... ++-+ .++++.++.. ....++...+...-..
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~r 216 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSR 216 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccc
Confidence 4444432 233456789999999999999998876431 1122 5677777754 3456666655432111
Q ss_pred -----CCCCCCchH------HHHHHHHHHhC--CCeEEEEEeCCC
Q 042806 233 -----TLHEESDSG------RARSLRNRLKK--EKTILVILDNIW 264 (390)
Q Consensus 233 -----~~~~~~~~~------~~~~l~~~l~~--~~~~LlVlDdv~ 264 (390)
...+.+... ..-.+.+++.. ++.+|+++||+.
T Consensus 217 tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 217 SVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 111112111 22356677763 677999999984
No 256
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.90 E-value=0.017 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.|.|.|++|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 257
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.90 E-value=0.017 Score=57.93 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=38.3
Q ss_pred cccccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 153 YEACESRMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 153 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...++|.+..++.+...+..+ ..+.|+|++|+||||||+.+.....
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 456888888888877777655 4788999999999999999998764
No 258
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.89 E-value=0.016 Score=53.29 Aligned_cols=25 Identities=36% Similarity=0.309 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.+|+|.|+.|+|||||+..++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999988754
No 259
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.87 E-value=0.018 Score=48.79 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+|+|.|+.|+||||+++.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988764
No 260
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.86 E-value=0.018 Score=48.63 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+|+|.|+.|+||||+++.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998764
No 261
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.84 E-value=0.017 Score=49.54 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..|.|.|++|+||||+++.+.....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999988763
No 262
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.84 E-value=0.033 Score=48.35 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
...+|+|.|+.|+||||+++.+......
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999999998764
No 263
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.81 E-value=0.057 Score=52.08 Aligned_cols=43 Identities=23% Similarity=0.297 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 159 RMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 159 R~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
....+..+...+.+++ +.+.|.|++|+||||++..+.......
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 3344555666665544 388999999999999999999887654
No 264
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.81 E-value=0.018 Score=49.25 Aligned_cols=23 Identities=22% Similarity=0.047 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.|.|.|++|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 265
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.80 E-value=0.015 Score=50.82 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.+.--.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997654
No 266
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.80 E-value=0.018 Score=52.22 Aligned_cols=27 Identities=22% Similarity=0.092 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..++|+|.|+.|+|||||+..++....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 356899999999999999999988753
No 267
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.77 E-value=0.017 Score=52.75 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
++|.|+|+.|+|||||+..+.....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999988753
No 268
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.76 E-value=0.018 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVA 196 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~ 196 (390)
.+.+|+|.|+.|+||||+++.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 269
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.76 E-value=0.019 Score=52.33 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
....+|+|.|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457899999999999999999987654
No 270
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.75 E-value=0.018 Score=48.22 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.-.++|+|+.|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998754
No 271
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.75 E-value=0.016 Score=51.57 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.+.--.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999986543
No 272
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.74 E-value=0.017 Score=50.93 Aligned_cols=26 Identities=35% Similarity=0.294 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..+|+|+|+.|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999988764
No 273
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.73 E-value=0.017 Score=50.94 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
...+++|.|+.|+|||||++.+.--
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 274
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.71 E-value=0.017 Score=53.12 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..++|+|.|+.|+|||||+..++....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 346899999999999999999988653
No 275
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.69 E-value=0.017 Score=54.99 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
....+|.|+|++|+||||+++.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999998765
No 276
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.68 E-value=0.027 Score=53.92 Aligned_cols=99 Identities=19% Similarity=0.260 Sum_probs=59.6
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCC--CCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------C
Q 042806 166 ILDALKN-PDVNMLGIYGMGGIVKTTLAKEVARKAETEKL--FDQVIFVEVSKIQ-DIRKIQGEIADKLGLT-------L 234 (390)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~--f~~~~wv~v~~~~-~~~~l~~~i~~~l~~~-------~ 234 (390)
.++.|.. .+-.-++|.|.+|+|||+|+.++++....... =+.++++.++... ...+++..+...-... .
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 4454443 23345678899999999999999988653211 1357777776543 4566666665442111 1
Q ss_pred CCCCchH------HHHHHHHHHh--CCCeEEEEEeCCC
Q 042806 235 HEESDSG------RARSLRNRLK--KEKTILVILDNIW 264 (390)
Q Consensus 235 ~~~~~~~------~~~~l~~~l~--~~~~~LlVlDdv~ 264 (390)
.+.+... ..-.+.+++. .++.+|+++||+.
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 1111111 2335666666 4677999999973
No 277
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.68 E-value=0.015 Score=50.98 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.++--.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999997543
No 278
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.68 E-value=0.012 Score=53.08 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+..+|+|.|+.|+||||+++.+.....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 279
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.68 E-value=0.07 Score=45.72 Aligned_cols=32 Identities=16% Similarity=0.086 Sum_probs=26.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQ 207 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~ 207 (390)
..+|+|.|+.|+||||+++.+.+..... .+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 4689999999999999999999988653 3554
No 280
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.67 E-value=0.022 Score=52.93 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
...+++|+|+.|+||||+++.++.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3569999999999999999999887653
No 281
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.67 E-value=0.017 Score=51.76 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
...+++|+|+.|+|||||++.+.--
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999999998654
No 282
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.64 E-value=0.015 Score=51.48 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.+.--.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999986543
No 283
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.64 E-value=0.019 Score=48.43 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..++|+|+.|+|||||++.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 457899999999999999998753
No 284
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.62 E-value=0.021 Score=50.89 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
...+++|+|+.|+|||||++.++--
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999874
No 285
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.61 E-value=0.014 Score=50.22 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.++--.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999987643
No 286
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.59 E-value=0.018 Score=51.19 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.+.--.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45689999999999999999987543
No 287
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.58 E-value=0.028 Score=51.45 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
...+|+|+|++|+||||++..++.....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999887764
No 288
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.56 E-value=0.017 Score=50.27 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.+.--.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999997654
No 289
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.56 E-value=0.044 Score=52.84 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=56.0
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCC-------C
Q 042806 166 ILDALKN-PDVNMLGIYGMGGIVKTTLA-KEVARKAETEKLFD-QVIFVEVSKIQ-DIRKIQGEIADKLGLT-------L 234 (390)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GvGKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~-~~~~l~~~i~~~l~~~-------~ 234 (390)
.++.|.. .+-.-++|.|.+|+|||+|+ ..+.+... .+ .++++.++... ...++...+...-... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 4455543 23456789999999999995 46666542 45 35778887654 4556666665432221 1
Q ss_pred CCCCchH------HHHHHHHHHhC-CCeEEEEEeCCC
Q 042806 235 HEESDSG------RARSLRNRLKK-EKTILVILDNIW 264 (390)
Q Consensus 235 ~~~~~~~------~~~~l~~~l~~-~~~~LlVlDdv~ 264 (390)
.+.+... ..-.+.+++.+ ++.+|+++||+.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 1111111 12245555543 567999999984
No 290
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.56 E-value=0.14 Score=49.84 Aligned_cols=96 Identities=14% Similarity=0.188 Sum_probs=58.0
Q ss_pred HHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC-HHHHHHHHHH----HhCC------
Q 042806 165 DILDALKN-PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQD-IRKIQGEIAD----KLGL------ 232 (390)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~l~~~i~~----~l~~------ 232 (390)
+.++.|.. .+-.-++|.|..|+|||+|+.++.+.. +-+.++++.++.... ..+++.++-. ..+.
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rt 291 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERT 291 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGE
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccce
Confidence 34555543 344568899999999999999987653 246788888887654 5555555422 1110
Q ss_pred ----CCCCCCchH------HHHHHHHHHhC-CCeEEEEEeCCC
Q 042806 233 ----TLHEESDSG------RARSLRNRLKK-EKTILVILDNIW 264 (390)
Q Consensus 233 ----~~~~~~~~~------~~~~l~~~l~~-~~~~LlVlDdv~ 264 (390)
...+.+... ..-.+.+++.+ ++.+||++|++.
T Consensus 292 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~Dslt 334 (588)
T 3mfy_A 292 VLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTS 334 (588)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTT
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchH
Confidence 111111111 12244455543 667999999995
No 291
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.55 E-value=0.021 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
.+|.|.|++|+||||+++.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 292
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.54 E-value=0.019 Score=50.41 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
...+++|+|+.|+|||||++.+.--
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998754
No 293
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.53 E-value=0.017 Score=50.86 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.+.--.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999986553
No 294
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.53 E-value=0.019 Score=51.16 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.+.--.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999997543
No 295
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.50 E-value=0.047 Score=52.68 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=55.6
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCC-------CC
Q 042806 166 ILDALKN-PDVNMLGIYGMGGIVKTTLA-KEVARKAETEKLFD-QVIFVEVSKIQ-DIRKIQGEIADKLGL-------TL 234 (390)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GvGKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~-~~~~l~~~i~~~l~~-------~~ 234 (390)
.++.|.. .+-.-++|.|.+|+|||+|+ ..+.+... .+ .++++.++... ...++...+...-.. ..
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~at 240 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVAS 240 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEEC
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEEC
Confidence 4444443 23456789999999999995 46666542 55 35778887654 455666666542211 11
Q ss_pred CCCCchH------HHHHHHHHHhC-CCeEEEEEeCCC
Q 042806 235 HEESDSG------RARSLRNRLKK-EKTILVILDNIW 264 (390)
Q Consensus 235 ~~~~~~~------~~~~l~~~l~~-~~~~LlVlDdv~ 264 (390)
.+.+... ..-.+.+++.+ ++.+|+++||+.
T Consensus 241 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 241 ASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 1111111 12245555543 567999999984
No 296
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.50 E-value=0.023 Score=51.57 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
+...+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456789999999999999999998654
No 297
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.48 E-value=0.02 Score=50.70 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|.|+.|+|||||++.++--.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999987543
No 298
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.47 E-value=0.04 Score=48.55 Aligned_cols=27 Identities=33% Similarity=0.326 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...++.+.|.+|+||||++..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999998775
No 299
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.46 E-value=0.02 Score=50.78 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
...+++|+|+.|+|||||++.+.--
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999654
No 300
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.45 E-value=0.029 Score=50.93 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=31.3
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 042806 172 NPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK 215 (390)
Q Consensus 172 ~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 215 (390)
....++|+|+|-||+||||++..+.......+ . .++-|....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G-~-~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG-K-RVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC-C-eEEEEeCCC
Confidence 34678999999999999999999998876542 3 355566654
No 301
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.43 E-value=0.021 Score=51.07 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.+.--.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999987543
No 302
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.42 E-value=0.026 Score=45.27 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
+-|+|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998753
No 303
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.42 E-value=0.022 Score=46.36 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999764
No 304
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.40 E-value=0.02 Score=47.51 Aligned_cols=22 Identities=36% Similarity=0.379 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 042806 177 MLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999763
No 305
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.40 E-value=0.022 Score=50.99 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...++.|+|++|+|||||+..+.....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987554
No 306
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.39 E-value=0.019 Score=50.61 Aligned_cols=26 Identities=27% Similarity=0.301 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.+.--.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999986543
No 307
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.37 E-value=0.024 Score=50.61 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.++|+|+.|+|||||++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
No 308
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.35 E-value=0.092 Score=50.70 Aligned_cols=99 Identities=15% Similarity=0.201 Sum_probs=57.0
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHH-HHHHHHhhh----cCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCC----
Q 042806 166 ILDALKN-PDVNMLGIYGMGGIVKTTLA-KEVARKAET----EKLFD-QVIFVEVSKIQ-DIRKIQGEIADKLGLT---- 233 (390)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GvGKTtLa-~~v~~~~~~----~~~f~-~~~wv~v~~~~-~~~~l~~~i~~~l~~~---- 233 (390)
.++.|.. .+-.-++|.|.+|+|||+|| ..+.+.... .++-+ .++++.++... ...++...+...-...
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 4444443 23455789999999999994 566666542 12244 47788887654 4566666665422111
Q ss_pred ---CCCCCchH------HHHHHHHHHhC-CCeEEEEEeCCC
Q 042806 234 ---LHEESDSG------RARSLRNRLKK-EKTILVILDNIW 264 (390)
Q Consensus 234 ---~~~~~~~~------~~~~l~~~l~~-~~~~LlVlDdv~ 264 (390)
..+.+... ..-.+.+++.+ ++.+||++||+.
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 11111111 12245555543 567999999984
No 309
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.35 E-value=0.019 Score=50.68 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.+.--.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999997654
No 310
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.35 E-value=0.022 Score=50.72 Aligned_cols=26 Identities=31% Similarity=0.199 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.++--.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999986543
No 311
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.35 E-value=0.027 Score=46.38 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=25.4
Q ss_pred HHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHH
Q 042806 164 NDILDALKN-PDVNMLGIYGMGGIVKTTLAKEVAR 197 (390)
Q Consensus 164 ~~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~ 197 (390)
.++.+.+.. .+..-|+|+|.+|+|||||+..+..
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 344454544 4556788999999999999998864
No 312
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.34 E-value=0.033 Score=53.83 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
...+++|+|+.|+|||||++.+......
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 4579999999999999999999887653
No 313
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.32 E-value=0.02 Score=51.42 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.+.--.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999987543
No 314
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.31 E-value=0.18 Score=43.81 Aligned_cols=38 Identities=18% Similarity=-0.043 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 159 RMSTLNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 159 R~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
|....+.+..++.. + -+.|+|+.|.|||.++..+....
T Consensus 95 ~~~Q~~ai~~~~~~-~--~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVD-K--RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTT-S--EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC-C--CEEEEeCCCCCHHHHHHHHHHHc
Confidence 33334444444433 2 27789999999999999887765
No 315
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.31 E-value=0.025 Score=45.39 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998764
No 316
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.29 E-value=0.028 Score=49.04 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...|+|.|..|+||||+++.+.....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998863
No 317
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.29 E-value=0.026 Score=45.61 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
--|+|+|.+|+|||||+..+....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 347899999999999999998753
No 318
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.29 E-value=0.034 Score=46.46 Aligned_cols=108 Identities=19% Similarity=0.038 Sum_probs=50.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEKT 255 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 255 (390)
.++.|+|+.|+||||++..++......+ .. +.++..... .......+...++........ .....+.+.+. ++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~~-v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~-~~~~~~~~~~~-~~~ 77 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-KK-VAVFKPKID--SRYHSTMIVSHSGNGVEAHVI-ERPEEMRKYIE-EDT 77 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-CE-EEEEEEC-------CCCEECC----CEECEEE-SSGGGGGGGCC-TTE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-Ce-EEEEeeccc--cccCcccEEecCCCceeeEEE-CCHHHHHHHhc-CCC
Confidence 5788999999999999977776654322 32 233322211 000000111111111110000 00111222222 244
Q ss_pred EEEEEeCCCCC-cccccccCCCCCCCCCcEEEEEecc
Q 042806 256 ILVILDNIWGN-LDFQAVGIPHGDDRKGCKVLLTARS 291 (390)
Q Consensus 256 ~LlVlDdv~~~-~~~~~l~~~l~~~~~~s~IivTtr~ 291 (390)
-+|++|.++.. .+|......+.+ .+..|++|.+.
T Consensus 78 dvviIDE~Q~~~~~~~~~l~~l~~--~~~~Vi~~Gl~ 112 (184)
T 2orw_A 78 RGVFIDEVQFFNPSLFEVVKDLLD--RGIDVFCAGLD 112 (184)
T ss_dssp EEEEECCGGGSCTTHHHHHHHHHH--TTCEEEEEEES
T ss_pred CEEEEECcccCCHHHHHHHHHHHH--CCCCEEEEeec
Confidence 69999999765 344443322212 27789998884
No 319
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.27 E-value=0.038 Score=45.82 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=25.4
Q ss_pred HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 165 DILDALKNPDVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
.+.+ +...+..-|+|+|.+|+|||||+..+...
T Consensus 7 ~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 7 RIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 4455 34445566889999999999999999854
No 320
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.18 E-value=0.04 Score=45.58 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
...-|+|+|.+|+|||||+..+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4456889999999999999998764
No 321
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.12 E-value=0.087 Score=45.57 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
...+|+|.|+.|+||||+++.+.+.....
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 34689999999999999999999988653
No 322
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.10 E-value=0.036 Score=46.14 Aligned_cols=26 Identities=19% Similarity=0.042 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578899999999999999998753
No 323
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.10 E-value=0.026 Score=46.77 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
..|+|+|.+|+|||||+..+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 324
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.09 E-value=0.032 Score=52.26 Aligned_cols=27 Identities=26% Similarity=0.108 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
+...+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999998754
No 325
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.06 E-value=0.032 Score=44.91 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 042806 178 LGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (390)
|+|+|.+|+|||||+..+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6799999999999999998654
No 326
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.05 E-value=0.028 Score=45.27 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+|+|.+|+|||||+..+....
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 327
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.04 E-value=0.028 Score=52.18 Aligned_cols=26 Identities=35% Similarity=0.266 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|.|+.|+|||||++.+.--.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45689999999999999999997643
No 328
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.99 E-value=0.033 Score=52.40 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
++|+|.|+.|+|||||+..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999988754
No 329
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.98 E-value=0.034 Score=45.47 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
+...|+|+|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999764
No 330
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.97 E-value=0.04 Score=47.90 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...+|+|.|+.|+||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999987653
No 331
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.97 E-value=0.032 Score=44.83 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+|+|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999988654
No 332
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.96 E-value=0.027 Score=47.52 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.+.|.|.|++|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678899999999999999998764
No 333
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.96 E-value=0.03 Score=45.25 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+|+|.+|+|||||+..+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998764
No 334
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.96 E-value=0.03 Score=45.56 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
--|+|+|.+|+|||||+..+....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 357899999999999999997653
No 335
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.95 E-value=0.033 Score=44.89 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+|+|.+|+|||||+..+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 336
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.94 E-value=0.026 Score=50.12 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
..+++|.|+.|+|||||++.+.--
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999754
No 337
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.93 E-value=0.04 Score=47.48 Aligned_cols=37 Identities=16% Similarity=-0.008 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK 215 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 215 (390)
.|.+.|.||+||||++..+....... .++ +.++.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~-G~~-V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ-GVR-VMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-TCC-EEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-CCC-EEEEEeCC
Confidence 37789999999999999999887653 354 34444443
No 338
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.92 E-value=0.033 Score=46.24 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+|+|.+|+|||||+..+....
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47799999999999999998764
No 339
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.91 E-value=0.034 Score=45.04 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
--|+|+|.+|+|||||+..+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 347899999999999999998653
No 340
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.90 E-value=0.031 Score=45.22 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+|+|.+|+|||||+..+....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998764
No 341
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.89 E-value=0.023 Score=49.31 Aligned_cols=25 Identities=24% Similarity=0.061 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
+..+|+|.|+.|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999998765
No 342
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.88 E-value=0.029 Score=51.36 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
+.++++|.|+.|+|||||++.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46789999999999999999998653
No 343
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.84 E-value=0.032 Score=45.72 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..-|+|+|.+|+|||||+..+....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 4458899999999999999998754
No 344
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.83 E-value=0.035 Score=45.96 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
--|+|+|.+|+|||||+..+....
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999998753
No 345
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.83 E-value=0.23 Score=48.57 Aligned_cols=95 Identities=13% Similarity=0.246 Sum_probs=56.9
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHH----HhCCC------
Q 042806 166 ILDALKN-PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKI-QDIRKIQGEIAD----KLGLT------ 233 (390)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~l~~~i~~----~l~~~------ 233 (390)
.++.|.. .+-.-++|.|..|+|||+|+.++.+... -+.++++.++.. ....+++.++-. .++..
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtv 297 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTV 297 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEE
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceE
Confidence 4555543 3456788999999999999999987642 467888888765 344455444321 11110
Q ss_pred ----CCCCCchH------HHHHHHHHHhC-CCeEEEEEeCCC
Q 042806 234 ----LHEESDSG------RARSLRNRLKK-EKTILVILDNIW 264 (390)
Q Consensus 234 ----~~~~~~~~------~~~~l~~~l~~-~~~~LlVlDdv~ 264 (390)
..+.+... ..-.+.+++.+ ++.+||++|++.
T Consensus 298 vV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 298 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 01111111 12345556654 567999999984
No 346
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.82 E-value=0.043 Score=46.75 Aligned_cols=26 Identities=19% Similarity=0.042 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...-|+|+|++|+|||||+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999998764
No 347
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.81 E-value=0.033 Score=51.66 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|.|+.|+|||||++.++--.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999987543
No 348
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.81 E-value=0.032 Score=50.31 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.+.--.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999987654
No 349
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.80 E-value=0.041 Score=45.84 Aligned_cols=26 Identities=8% Similarity=0.263 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
+..-|+|+|.+|+|||||+..+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999998653
No 350
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.80 E-value=0.036 Score=46.07 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+|+|.+|+|||||+..+.+..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887754
No 351
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.80 E-value=0.032 Score=45.17 Aligned_cols=22 Identities=23% Similarity=0.578 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 042806 177 MLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
-|+|+|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 352
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.77 E-value=0.037 Score=45.22 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.-|+|+|.+|+|||||+..+....
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999998653
No 353
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.76 E-value=0.037 Score=44.74 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+|+|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998653
No 354
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.76 E-value=0.097 Score=48.45 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=26.1
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 170 LKNPDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 170 L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+..+..+++.+.|.||+||||++..+.....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3355678999999999999999999987765
No 355
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.75 E-value=0.037 Score=46.80 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.+.--|+|+|.+|+|||||+..+.+..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 344457899999999999999998653
No 356
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.75 E-value=0.037 Score=45.77 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.+.+|+|+.|+|||||+..++--.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999987654
No 357
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.74 E-value=0.033 Score=44.92 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 042806 177 MLGIYGMGGIVKTTLAKEVAR 197 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~ 197 (390)
-|+|+|.+|+|||||++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 377999999999999998864
No 358
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.73 E-value=0.036 Score=45.27 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+|+|.+|+|||||+..+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47899999999999999998653
No 359
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.73 E-value=0.042 Score=51.07 Aligned_cols=112 Identities=11% Similarity=0.054 Sum_probs=58.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQ-VIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKK 252 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (390)
...+++|.|+.|+|||||++.+....... ... ++.+.-.-.+..... ..+ +...............+...|..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~-~~~---v~q~~~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESK-KCL---VNQREVHRDTLGFSEALRSALRE 195 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSE---EEEEEBTTTBSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhcc-ccc---eeeeeeccccCCHHHHHHHHhhh
Confidence 34589999999999999999998776432 112 222211111100000 000 00000000112233456666654
Q ss_pred CCeEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchhhh
Q 042806 253 EKTILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLDVL 295 (390)
Q Consensus 253 ~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~v~ 295 (390)
+|=+|++|+..+.+.++.+... ...|..||+|+...+.+
T Consensus 196 -~PdvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 -DPDIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp -CCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred -CcCEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 3468899999866555443222 22356688888875543
No 360
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.70 E-value=0.038 Score=45.22 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..-|+|+|.+|+|||||+..+....
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3458899999999999999998763
No 361
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.70 E-value=0.037 Score=44.81 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 042806 177 MLGIYGMGGIVKTTLAKEVAR 197 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~ 197 (390)
-|+|+|.+|+|||||+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999864
No 362
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.69 E-value=0.036 Score=51.90 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|.|+.|+|||||++.+.--.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 45689999999999999999997644
No 363
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.68 E-value=0.063 Score=52.30 Aligned_cols=46 Identities=4% Similarity=-0.146 Sum_probs=32.9
Q ss_pred ccchhHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 156 CESRMSTLNDILDALK--NPDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 156 ~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
-+.|.+-.+.+.+... ..+..+|.+.|+.|+||||+++.+...+..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4445444444445442 234578999999999999999999999864
No 364
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.68 E-value=0.14 Score=43.55 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+.|+|-|..|+||||+++.+.+.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4789999999999999999999885
No 365
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.68 E-value=0.032 Score=50.75 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45789999999999999999986543
No 366
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.67 E-value=0.041 Score=51.14 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|.|+.|+|||||.+.+.--.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 45689999999999999999997643
No 367
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.66 E-value=0.041 Score=51.20 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|.|+.|+|||||.+.++--.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45689999999999999999997643
No 368
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.66 E-value=0.035 Score=45.55 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
.-|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999865
No 369
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.65 E-value=0.04 Score=44.47 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 042806 177 MLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
-|+|+|.+|+|||||+..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999875
No 370
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.64 E-value=0.08 Score=46.88 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=27.9
Q ss_pred HHHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 164 NDILDALKNP--DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 164 ~~l~~~L~~~--~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.-+..|+... ....+.++|++|.|||.+|..+.+..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3466666653 24579999999999999999998864
No 371
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.62 E-value=0.037 Score=46.07 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
--|+|+|.+|+|||||+..+.+..
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 357899999999999999988754
No 372
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.60 E-value=0.034 Score=53.15 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.+.+|+|+|++|+||||++..+......
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999887654
No 373
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.58 E-value=0.042 Score=44.51 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.-|+|+|.+|+|||||+..+....
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999997653
No 374
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.58 E-value=0.038 Score=51.65 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|.|+.|+|||||.+.++--.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34689999999999999999997543
No 375
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.58 E-value=0.1 Score=51.17 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.-.++.|.|++|+|||||++.++.....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999999877543
No 376
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.57 E-value=0.065 Score=48.59 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 163 LNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
+++|.+.+. ..+++|.|+.|+|||||++.+. ..
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 456666654 3588999999999999999998 54
No 377
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.57 E-value=0.059 Score=45.28 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=20.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVAR 197 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~ 197 (390)
+..-|+|+|.+|+|||||+..+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 344578999999999999999865
No 378
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.56 E-value=0.041 Score=45.91 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
..-|+|+|.+|+|||||+..+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999874
No 379
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.55 E-value=0.09 Score=50.61 Aligned_cols=95 Identities=17% Similarity=0.207 Sum_probs=55.0
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCC-------C
Q 042806 166 ILDALKN-PDVNMLGIYGMGGIVKTTLA-KEVARKAETEKLFD-QVIFVEVSKIQ-DIRKIQGEIADKLGLT-------L 234 (390)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GvGKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~-~~~~l~~~i~~~l~~~-------~ 234 (390)
.++.|.. .+-.-++|.|.+|+|||+|+ ..+.+.. +-+ .++|+.++... ...++...+...-... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 4444442 23445789999999999996 4666542 233 46788888754 4566666654432221 1
Q ss_pred CCCCchH------HHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 235 HEESDSG------RARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 235 ~~~~~~~------~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
.+.+... ..-.+.+++. .++.+||++||+.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 1111111 1223445554 3677999999984
No 380
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.55 E-value=0.042 Score=44.81 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..-|+|+|.+|+|||||+..+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3458899999999999999998764
No 381
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.54 E-value=0.045 Score=50.93 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|.|+.|+|||||++.+.--.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45789999999999999999987543
No 382
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.54 E-value=0.052 Score=48.07 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK 215 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 215 (390)
++|+|.|-||+||||++..+....... .+ .+.-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~-G~-~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM-GK-TIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT-TC-CEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC-CC-cEEEEcCCC
Confidence 578889999999999999999887643 23 355666653
No 383
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.53 E-value=0.034 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+|+|.+|+|||||+..+.+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 384
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.53 E-value=0.045 Score=45.84 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
--|+|+|.+|+|||||...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34789999999999999998753
No 385
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.53 E-value=0.039 Score=45.53 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.-|+|+|.+|+|||||+..+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999998764
No 386
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.52 E-value=0.045 Score=51.15 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
...+++|.|+.|+|||||++.+.--
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4568999999999999999999754
No 387
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.49 E-value=0.04 Score=44.98 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+|+|..|+|||||+..+....
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 388
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.47 E-value=0.038 Score=51.18 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|.|+.|+|||||++.+.--.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 44689999999999999999997543
No 389
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.46 E-value=0.041 Score=45.30 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
--|+|+|.+|+|||||+..+.+..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999998753
No 390
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.46 E-value=0.069 Score=50.75 Aligned_cols=29 Identities=14% Similarity=0.058 Sum_probs=24.6
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 172 NPDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 172 ~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.....+++|.|+.|+|||||++.+.....
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 34556899999999999999999988764
No 391
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.45 E-value=0.044 Score=45.21 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+|+|.+|+|||||+..+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 392
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.45 E-value=0.044 Score=45.35 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.-|+|+|.+|+|||||+..+....
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999998753
No 393
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.44 E-value=0.062 Score=50.32 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=55.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEE-EEEeCCCCCHHHHHHHHHHHhCCCCC---CCCchHHHHHHHH
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVI-FVEVSKIQDIRKIQGEIADKLGLTLH---EESDSGRARSLRN 248 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~-wv~v~~~~~~~~l~~~i~~~l~~~~~---~~~~~~~~~~l~~ 248 (390)
....+++|+|+.|+|||||++.+....... ....+ ++.-.-..... ...+.-.. ..........+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~-------~~~~~v~Q~~~g~~~~~~~~~l~~ 204 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFK-------HKKSIVNQREVGEDTKSFADALRA 204 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCC-------CSSSEEEEEEBTTTBSCSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhc-------cCceEEEeeecCCCHHHHHHHHHH
Confidence 345689999999999999999998865432 12222 33211110000 00000000 0011122345666
Q ss_pred HHhCCCeEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchh
Q 042806 249 RLKKEKTILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLD 293 (390)
Q Consensus 249 ~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~ 293 (390)
.|.. ++=+|++|.+.+......+... ...|..|+.|+...+
T Consensus 205 ~L~~-~pd~illdE~~d~e~~~~~l~~---~~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 205 ALRE-DPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNT 245 (372)
T ss_dssp HTTS-CCSEEEESCCCSHHHHHHHHHH---HTTTCEEEECCCCCS
T ss_pred Hhhh-CcCEEEECCCCCHHHHHHHHHH---HhcCCEEEEEECcch
Confidence 6655 3468889999755443332222 123556777777544
No 394
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.43 E-value=0.11 Score=47.74 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=26.2
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 170 LKNPDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 170 L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
+.++..+++.+.|.||+||||++..+......
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~ 42 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAK 42 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHTT
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 33455678889999999999999999888754
No 395
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.42 E-value=0.048 Score=45.22 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..-|+|+|.+|+|||||+..+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4568899999999999999998764
No 396
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.42 E-value=0.037 Score=45.78 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+|+|.+|+|||||+..+....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999998753
No 397
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.39 E-value=0.048 Score=45.40 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+|+|.+|+|||||+..+....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47799999999999999998764
No 398
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.39 E-value=0.044 Score=45.53 Aligned_cols=23 Identities=35% Similarity=0.196 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+|+|.+|+|||||++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999997666543
No 399
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.39 E-value=0.05 Score=52.52 Aligned_cols=86 Identities=13% Similarity=0.197 Sum_probs=49.7
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCCc-h---
Q 042806 175 VNMLGIYGMGGIVKTTLA-KEVARKAETEKLFD-QVIFVEVSKIQ-DIRKIQGEIADKLGL-------TLHEESD-S--- 240 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~-~~~~l~~~i~~~l~~-------~~~~~~~-~--- 240 (390)
-.-++|.|.+|+|||+|+ ..+.+... .+ .++++.++... ...++...+...-.. ...+.+. .
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 345779999999999995 46666542 44 46778887653 345555554332111 0111111 1
Q ss_pred --HHHHHHHHHHh-CCCeEEEEEeCCC
Q 042806 241 --GRARSLRNRLK-KEKTILVILDNIW 264 (390)
Q Consensus 241 --~~~~~l~~~l~-~~~~~LlVlDdv~ 264 (390)
...-.+.+++. .++.+|+++||+.
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 12234445554 3567999999973
No 400
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.35 E-value=0.025 Score=50.15 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
+...|+|.|..|+||||+++.+....
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998765
No 401
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.34 E-value=0.047 Score=45.44 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
--|+|+|.+|+|||||+..+....
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 458899999999999999998754
No 402
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.34 E-value=0.044 Score=45.09 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.-|+|+|.+|+|||||+..+....
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 457899999999999999998754
No 403
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.31 E-value=0.048 Score=44.82 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+|+|.+|+|||||+..+.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 404
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.31 E-value=0.024 Score=56.57 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-+.++|++|+|||+||+.+.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 47899999999999999997765
No 405
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.29 E-value=0.045 Score=44.95 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..-|+|+|.+|+|||||+..+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3458899999999999999998653
No 406
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.26 E-value=0.045 Score=45.77 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=21.7
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 172 NPDVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 172 ~~~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
..+..-|+|+|.+|+|||||+..+...
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhC
Confidence 334456889999999999999998643
No 407
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.26 E-value=0.045 Score=45.97 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..-|+|+|.+|+|||||+..+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3458899999999999999998654
No 408
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.25 E-value=0.035 Score=51.52 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
...+++|.|+.|+|||||++.++--
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999754
No 409
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.25 E-value=0.05 Score=44.58 Aligned_cols=24 Identities=21% Similarity=0.094 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
--|+|+|.+|+|||||+..+....
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999988653
No 410
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.25 E-value=0.05 Score=44.54 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.-|+|+|.+|+|||||+..+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 347899999999999999998763
No 411
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.23 E-value=0.04 Score=50.01 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 042806 178 LGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~ 198 (390)
|+|+|+.|+|||||++.++..
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999997653
No 412
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.22 E-value=0.054 Score=51.32 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVAR 197 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~ 197 (390)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999987
No 413
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.21 E-value=0.052 Score=44.42 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
--|+|+|.+|+|||||+..+....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 357899999999999999998754
No 414
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.21 E-value=0.06 Score=45.00 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..--|+|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34458899999999999999998763
No 415
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.19 E-value=0.052 Score=46.37 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.+|.|.|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998765
No 416
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.18 E-value=0.038 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVA 196 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~ 196 (390)
..-|+|+|.+|+|||||+..+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3458899999999999999985
No 417
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.15 E-value=0.047 Score=44.62 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
..-|+|+|.+|+|||||+..+...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998765
No 418
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.14 E-value=0.052 Score=45.86 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..-|+|+|.+|+|||||+..+....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3457899999999999999988653
No 419
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.12 E-value=0.059 Score=49.99 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...+|+|+|++|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 367899999999999999999987653
No 420
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.12 E-value=0.049 Score=46.81 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 042806 178 LGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~ 198 (390)
|+|+|.+|+|||+|+..+.+.
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCcCHHHHHHHHHhC
Confidence 678999999999999998764
No 421
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.11 E-value=0.054 Score=44.97 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
--|+|+|.+|+|||||+..+.+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 347899999999999999998754
No 422
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.11 E-value=0.048 Score=45.86 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..-|+|+|.+|+|||||+..+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3458899999999999999998764
No 423
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.10 E-value=0.048 Score=45.07 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.+..-|+|+|.+|+|||||+..+....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568899999999999999998654
No 424
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.09 E-value=0.054 Score=45.19 Aligned_cols=24 Identities=8% Similarity=0.199 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
--|+|+|.+|+|||||+..+....
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 357899999999999999998764
No 425
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.08 E-value=0.054 Score=45.16 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
--|+|+|.+|+|||||+..+....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358899999999999999998764
No 426
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.08 E-value=0.054 Score=45.92 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.--|+|+|.+|+|||||+..+....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999998763
No 427
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.07 E-value=0.067 Score=48.00 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=29.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSK 215 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 215 (390)
.++|+|.|-||+||||++..+....... .+ .+.-|....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~-G~-rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM-GK-KVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT-TC-CEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC-CC-eEEEEecCC
Confidence 3678889999999999999999887653 23 355566653
No 428
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.06 E-value=0.059 Score=49.70 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
....+++|+|++|+|||||.+.+.....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4567999999999999999999987654
No 429
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.05 E-value=0.051 Score=45.08 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.-|+|+|.+|+|||||+..+....
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999998764
No 430
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.04 E-value=0.12 Score=44.96 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=29.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 042806 178 LGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQD 218 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 218 (390)
|+|.|-||+||||++..+.......+ ..++-|......+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~ 41 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSC 41 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcC
Confidence 66699999999999999999886542 3466666655443
No 431
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.03 E-value=0.056 Score=44.96 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+|+|.+|+|||||+..+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 432
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.03 E-value=0.055 Score=45.46 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..-|+|+|.+|+|||||+..+....
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 4458899999999999999998764
No 433
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.03 E-value=0.037 Score=46.84 Aligned_cols=26 Identities=8% Similarity=0.036 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
.....++|+|+.|+|||||++.+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44567999999999999999988654
No 434
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.01 E-value=0.053 Score=51.02 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
...+++|.|+.|+|||||++.+.--
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4568999999999999999999753
No 435
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.01 E-value=0.077 Score=52.32 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
+..++.|.|+.|+|||||++.+......
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 4578999999999999999999988753
No 436
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.99 E-value=0.057 Score=44.98 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
--|+|+|.+|+|||||+..+....
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 357899999999999999998764
No 437
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.99 E-value=0.057 Score=45.83 Aligned_cols=25 Identities=16% Similarity=0.025 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..-|+|+|.+|+|||||+..+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999998764
No 438
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.95 E-value=0.057 Score=45.02 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
.-|+|+|.+|+|||||+..+...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 45789999999999999999874
No 439
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.91 E-value=0.053 Score=50.61 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...++|+|+.|+|||||++.+.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999987654
No 440
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.90 E-value=0.06 Score=44.77 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.-|+|+|..|+|||||+..+....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999998754
No 441
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.90 E-value=0.06 Score=44.65 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..-|+|+|.+|+|||||+..+....
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC
Confidence 3458899999999999999998653
No 442
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.89 E-value=0.05 Score=45.54 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
.-|+|+|.+|+|||||++.+.+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45779999999999999977664
No 443
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.88 E-value=0.049 Score=50.77 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...+++|+|+.|+|||||++.+.....
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345799999999999999999987653
No 444
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.86 E-value=0.054 Score=45.47 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.-|+|+|.+|+|||||+..+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998754
No 445
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.86 E-value=0.091 Score=47.58 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 163 LNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
++++...+.. .+++|.|++|+|||||.+.+....
T Consensus 160 v~~lf~~l~g---eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLKG---KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHSS---SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhcC---CeEEEECCCCCcHHHHHHHhcccc
Confidence 4566666543 588999999999999999996543
No 446
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.83 E-value=0.058 Score=46.12 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVAR 197 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~ 197 (390)
.-|+|+|.+|+|||||+..+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3488999999999999999874
No 447
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.82 E-value=0.062 Score=45.05 Aligned_cols=26 Identities=8% Similarity=0.183 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...-|+|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34568899999999999999997653
No 448
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.81 E-value=0.062 Score=45.27 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.-|+|+|.+|+|||||+..+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999998754
No 449
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.80 E-value=0.063 Score=44.53 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.-|+|+|.+|+|||||+..+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999998764
No 450
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.80 E-value=0.074 Score=45.06 Aligned_cols=26 Identities=19% Similarity=0.061 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..+|.|.|+.|+||||+++.+.....
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999999875
No 451
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.78 E-value=0.052 Score=45.65 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.--|+|+|.+|+|||||+..+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC--
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3457899999999999999997543
No 452
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.77 E-value=0.053 Score=45.46 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
--|+|+|.+|+|||||+..+.+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 457799999999999999998653
No 453
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.71 E-value=0.051 Score=44.77 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
--|+|+|.+|+|||||+..+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999865
No 454
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.60 E-value=0.079 Score=51.94 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
...+|.++|++|+||||+++.+.....-
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4568999999999999999999887753
No 455
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.60 E-value=0.088 Score=43.70 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=24.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC
Q 042806 178 LGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQ 217 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 217 (390)
+.|+|.+|+||||+|.++... . . .++|+.-...+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~----~-~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A----P-QVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C----S-SEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHHhc-C----C-CeEEEecCCCC
Confidence 689999999999999999765 2 1 25565554443
No 456
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.59 E-value=0.069 Score=49.44 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.+-..++|+|+.|+|||||++.+.....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3556899999999999999999998864
No 457
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.56 E-value=0.064 Score=44.62 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.-|+|+|.+|+|||||+..+.+..
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998763
No 458
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.55 E-value=0.07 Score=45.09 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.-|+|+|.+|+|||||+..+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 358899999999999999998753
No 459
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.49 E-value=0.059 Score=45.89 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
--|+|+|.+|+|||||+..+.+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 460
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.45 E-value=0.068 Score=46.01 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
+..-|+|+|.+|+|||||+..+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456889999999999999999765
No 461
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.42 E-value=0.074 Score=44.75 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..-|+|+|.+|+|||||+..+.+..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC
Confidence 3458899999999999999997653
No 462
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.41 E-value=0.075 Score=44.85 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..-|+|+|.+|+|||||+..+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3458899999999999999998653
No 463
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.38 E-value=0.076 Score=44.94 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
--|+|+|.+|+|||||+..+.+..
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999998653
No 464
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.35 E-value=0.042 Score=45.21 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=9.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
.-|+|+|.+|+|||||+..+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998754
No 465
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.34 E-value=0.078 Score=44.55 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.-|+|+|.+|+|||||+..+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 347899999999999999998754
No 466
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.29 E-value=0.079 Score=45.12 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
--|+|+|.+|+|||||+..+....
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 347799999999999999998764
No 467
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.28 E-value=0.072 Score=44.41 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..-|+|+|.+|+|||||+..+....
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999997653
No 468
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.26 E-value=0.077 Score=49.21 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.+++|+|++|+|||||++.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 588999999999999999987544
No 469
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.26 E-value=0.068 Score=51.48 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...+++|+|+.|+|||||++.++.-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45689999999999999999998764
No 470
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.24 E-value=0.075 Score=46.16 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...-|+|+|.+|+|||||+..+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 44568899999999999999998653
No 471
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.24 E-value=0.066 Score=50.85 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 042806 178 LGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~ 198 (390)
++|+|+.|+|||||++.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999764
No 472
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.23 E-value=0.14 Score=50.66 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
+..+|.|.|++|+||||+++.+......
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 4568999999999999999999988764
No 473
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.18 E-value=0.088 Score=48.60 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.+..+++|+|.+|+|||||+..+.....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999987654
No 474
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.17 E-value=0.081 Score=47.90 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
+...|+|+|.+|+|||||+..+....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34679999999999999999998753
No 475
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.17 E-value=0.19 Score=42.21 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=30.2
Q ss_pred cEEEEE-cCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 042806 176 NMLGIY-GMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDI 219 (390)
Q Consensus 176 ~vi~I~-G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 219 (390)
++|+|+ +-||+||||++..+.......+ . .+..+......+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g-~-~vlliD~D~~~~~ 44 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSG-Y-NIAVVDTDPQMSL 44 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTT-C-CEEEEECCTTCHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCC-C-eEEEEECCCCCCH
Confidence 577787 6799999999999999876532 3 3566666654433
No 476
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.16 E-value=0.076 Score=44.24 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 042806 177 MLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
-|+|+|..|+|||||+..+....
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999997653
No 477
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.16 E-value=0.21 Score=46.67 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=30.1
Q ss_pred CCccEEEEEc-CCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeC
Q 042806 173 PDVNMLGIYG-MGGIVKTTLAKEVARKAETEKLFDQVIFVEVS 214 (390)
Q Consensus 173 ~~~~vi~I~G-~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~ 214 (390)
.+.++|+|+| -||+||||++..++......+ . .++.+.+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g-~-rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMG-K-KVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHT-C-CEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCC-C-CEEEEECC
Confidence 3578899885 899999999999988876542 2 36667754
No 478
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.10 E-value=0.054 Score=49.80 Aligned_cols=106 Identities=15% Similarity=0.099 Sum_probs=54.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIADKLGLTLHEESDSGRARSLRNRLKKEK 254 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 254 (390)
..+++|+|+.|+|||||++.+...... -...+.+.-......... . +.++.-.. ........+...|.. +
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~---~~g~i~i~~~~e~~~~~~-~---~~i~~~~g--gg~~~r~~la~aL~~-~ 240 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK---EERIISIEDTEEIVFKHH-K---NYTQLFFG--GNITSADCLKSCLRM-R 240 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT---TSCEEEEESSCCCCCSSC-S---SEEEEECB--TTBCHHHHHHHHTTS-C
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC---CCcEEEECCeeccccccc-h---hEEEEEeC--CChhHHHHHHHHhhh-C
Confidence 357999999999999999999876532 234555543221110000 0 00000000 111223344455544 4
Q ss_pred eEEEEEeCCCCCcccccccCCCCCCCCCcEEEEEecchh
Q 042806 255 TILVILDNIWGNLDFQAVGIPHGDDRKGCKVLLTARSLD 293 (390)
Q Consensus 255 ~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~IivTtr~~~ 293 (390)
+=++++|+..+...++.+.. +. ..+..+|+||...+
T Consensus 241 p~ilildE~~~~e~~~~l~~-~~--~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 241 PDRIILGELRSSEAYDFYNV-LC--SGHKGTLTTLHAGS 276 (330)
T ss_dssp CSEEEECCCCSTHHHHHHHH-HH--TTCCCEEEEEECSS
T ss_pred CCEEEEcCCChHHHHHHHHH-Hh--cCCCEEEEEEcccH
Confidence 46889999977544443322 21 11223666666543
No 479
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.08 E-value=0.099 Score=41.93 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..+.+|+|+.|+||||+...++--.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999987644
No 480
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.02 E-value=0.099 Score=50.56 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
...+|.++|++|+||||+++.+.....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456789999999999999999988765
No 481
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=91.98 E-value=0.26 Score=41.82 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=30.2
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 042806 177 MLGIY-GMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIR 220 (390)
Q Consensus 177 vi~I~-G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 220 (390)
+|+|+ +-||+||||++..+.......+ .+..+......+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~ 43 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSAT 43 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHH
Confidence 56664 7799999999999999887542 56777776654443
No 482
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.97 E-value=0.096 Score=46.52 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
..|+|+|.+|+|||||...+....
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999997653
No 483
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.96 E-value=0.05 Score=45.19 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
.-|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998765
No 484
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.94 E-value=0.097 Score=43.05 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
+-+.|.|++|+||||||..+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 56889999999999999999874
No 485
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.72 E-value=0.095 Score=44.50 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
--|+|+|.+|+|||||+..+...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35789999999999999998764
No 486
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=91.70 E-value=0.1 Score=44.71 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
--|+|+|.+|+|||||+..+....
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 357899999999999999998753
No 487
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.69 E-value=0.11 Score=51.79 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
+..+|.|.|++|+||||+++.+.....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998874
No 488
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.69 E-value=0.48 Score=41.66 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=31.3
Q ss_pred CCccEEEEE-cCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 042806 173 PDVNMLGIY-GMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQD 218 (390)
Q Consensus 173 ~~~~vi~I~-G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 218 (390)
...++|+|+ |-||+||||++..+..... ++ + .+.-|......+
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g-~-~VlliD~D~~~~ 68 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KN-N-KVLLIDMDTQAS 68 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TT-S-CEEEEEECTTCH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CC-C-CEEEEECCCCCC
Confidence 456788885 5699999999999999887 42 3 466667765443
No 489
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.65 E-value=0.19 Score=49.50 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=30.6
Q ss_pred chhHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 042806 158 SRMSTLNDILDALK--NPDVNMLGIYGMGGIVKTTLAKEVARKAET 201 (390)
Q Consensus 158 gR~~~~~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 201 (390)
.|.+-...+.+... .....+|.+.|++|+||||+++.+......
T Consensus 353 ~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 353 TRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 34333444444442 234578999999999999999999887654
No 490
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.64 E-value=0.1 Score=49.96 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
..-..++|+|+.|+|||||++.+.....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4557899999999999999999988764
No 491
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.60 E-value=0.077 Score=50.39 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 042806 178 LGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (390)
|+|+|+.|+|||||++.++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5899999999999999998653
No 492
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.55 E-value=0.1 Score=50.47 Aligned_cols=25 Identities=16% Similarity=0.040 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAE 200 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~ 200 (390)
.+++|+|+.|+|||||++.+.--..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 7899999999999999999986543
No 493
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.52 E-value=0.31 Score=49.12 Aligned_cols=60 Identities=20% Similarity=0.161 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 042806 163 LNDILDALKNPDVNMLGIYGMGGIVKTTLAKEVARKAETEKLFDQVIFVEVSKIQDIRKIQGEIA 227 (390)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~l~~~i~ 227 (390)
.+.+...|.. ..+..|+||+|.|||+.+..+....-.. ...+.++........+++..+.
T Consensus 195 ~~AV~~al~~--~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 195 KEAVLFALSQ--KELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHC--SSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHH
Confidence 3445555543 2467899999999996655555444322 1246666666555666666553
No 494
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.32 E-value=0.076 Score=45.29 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
+...|+|+|..|+|||||+..+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999998764
No 495
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.29 E-value=0.14 Score=42.34 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=20.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHH
Q 042806 173 PDVNMLGIYGMGGIVKTTLAKEVAR 197 (390)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~ 197 (390)
.+..-|+|+|.+|+|||||+..+..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 3445688999999999999999854
No 496
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.22 E-value=0.11 Score=47.22 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
....|+|+|.+|+|||||...+...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3568999999999999999999865
No 497
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.16 E-value=0.059 Score=48.92 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042806 175 VNMLGIYGMGGIVKTTLAKEVARK 198 (390)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~ 198 (390)
..+++|.|++|+|||||++.+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHhccc
Confidence 358999999999999999998644
No 498
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.13 E-value=0.37 Score=43.99 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 042806 176 NMLGIYGMGGIVKTTLAKEVARKAETE 202 (390)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~ 202 (390)
.++...|.||+||||+|..+.......
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~ 41 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARS 41 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHC
Confidence 566667999999999999998887543
No 499
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.12 E-value=0.11 Score=51.03 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=0.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 042806 177 MLGIYGMGGIVKTTLAKEVA 196 (390)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~ 196 (390)
+++|+|+.|+|||||++.+.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
No 500
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.10 E-value=0.25 Score=44.23 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 042806 174 DVNMLGIYGMGGIVKTTLAKEVARKA 199 (390)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (390)
...-|+|+|.+|+|||||...+....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 35679999999999999999997653
Done!