BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042807
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SHQ|A Chain A, Crystal Structure Of Ublcp1
Length = 320
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 16/112 (14%)
Query: 161 RPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFL--MGDMKHKLLFCWDLSYCTATSFK 218
RP+ H+FL +E +D+ +WS+ + + +E + L + +K++F Y +T+
Sbjct: 166 RPYLHEFLTSAYEDYDIVIWSATSMRWIEEKMRLLGVASNDNYKVMF-----YLDSTAMI 220
Query: 219 ALENKYKALV-FKELRKVWEISDPNCPWAKGDYNESNTVLLDDSPYKALLNP 269
++ + +V K L +W + YN SNT++ DD L+NP
Sbjct: 221 SVHVPERGVVDVKPLGVIWALY--------KQYNSSNTIMFDDIRRNFLMNP 264
>pdb|3IPT|A Chain A, Crystal Structure Of Ketosteroid Isomerase Y16sD40N FROM
PS Putida With Bound Equilenin
pdb|3IPT|B Chain B, Crystal Structure Of Ketosteroid Isomerase Y16sD40N FROM
PS Putida With Bound Equilenin
pdb|3IPT|C Chain C, Crystal Structure Of Ketosteroid Isomerase Y16sD40N FROM
PS Putida With Bound Equilenin
pdb|3IPT|D Chain D, Crystal Structure Of Ketosteroid Isomerase Y16sD40N FROM
PS Putida With Bound Equilenin
Length = 131
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 293 GDLRVYLEMLAEAENVQRFIQHNPFGQSAITNRSEYWAFYLRAMN 337
GD+ ++M A+ V+ NPFGQ I R + AFY + +
Sbjct: 23 GDIEAIVQMYADDATVE-----NPFGQPPIHGREQIAAFYRQGLG 62
>pdb|1OHO|A Chain A, Crystal Structure Of Ketosteroid Isomerase Y16fD40N MUTANT
Complexed With Equilenin
Length = 131
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 293 GDLRVYLEMLAEAENVQRFIQHNPFGQSAITNRSEYWAFYLRAMN 337
GD+ ++M A+ V+ NPFGQ I R + AFY + +
Sbjct: 23 GDIEAIVQMYADDATVE-----NPFGQPPIHGREQIAAFYRQGLG 62
>pdb|1E3R|A Chain A, Crystal Structure Of Ketosteroid Isomerase Mutant D40n
(D38n Ti Numbering) From Pseudomonas Putida Complexed
With Androsten-3beta-Ol-17-One
pdb|1E3R|B Chain B, Crystal Structure Of Ketosteroid Isomerase Mutant D40n
(D38n Ti Numbering) From Pseudomonas Putida Complexed
With Androsten-3beta-Ol-17-One
pdb|1OGX|A Chain A, High Resolution Crystal Structure Of Ketosteroid Isomerase
Mutant D40n(D38n, Ti Numbering) From Pseudomonas Putida
Complexed With Equilenin At 2.0 A Resolution.
pdb|1OGX|B Chain B, High Resolution Crystal Structure Of Ketosteroid Isomerase
Mutant D40n(D38n, Ti Numbering) From Pseudomonas Putida
Complexed With Equilenin At 2.0 A Resolution.
pdb|2PZV|A Chain A, Crystal Structure Of Ketosteroid Isomerase D40n From
Pseudomonas Putida (Pksi) With Bound Phenol
pdb|2PZV|B Chain B, Crystal Structure Of Ketosteroid Isomerase D40n From
Pseudomonas Putida (Pksi) With Bound Phenol
pdb|2PZV|C Chain C, Crystal Structure Of Ketosteroid Isomerase D40n From
Pseudomonas Putida (Pksi) With Bound Phenol
pdb|2PZV|D Chain D, Crystal Structure Of Ketosteroid Isomerase D40n From
Pseudomonas Putida (Pksi) With Bound Phenol
pdb|2INX|A Chain A, Crystal Structure Of Ketosteroid Isomerase D40n From
Pseudomonas Putida (Pksi) With Bound 2,6-Difluorophenol
pdb|3CPO|A Chain A, Crystal Structure Of Ketosteroid Isomerase D40n With Bound
2-Fluorophenol
pdb|3VGN|A Chain A, Crystal Structure Of Ketosteroid Isomerase D40n From
Pseudomonas Putida (Pksi) With Bound
3-Fluoro-4-Nitrophenol
pdb|3VGN|B Chain B, Crystal Structure Of Ketosteroid Isomerase D40n From
Pseudomonas Putida (Pksi) With Bound
3-Fluoro-4-Nitrophenol
Length = 131
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 293 GDLRVYLEMLAEAENVQRFIQHNPFGQSAITNRSEYWAFYLRAMN 337
GD+ ++M A+ V+ NPFGQ I R + AFY + +
Sbjct: 23 GDIEAIVQMYADDATVE-----NPFGQPPIHGREQIAAFYRQGLG 62
>pdb|3OWY|A Chain A, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM105C- Cn From P. Putida With Bound
Equilenin
pdb|3OWY|B Chain B, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM105C- Cn From P. Putida With Bound
Equilenin
pdb|3OWY|C Chain C, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM105C- Cn From P. Putida With Bound
Equilenin
pdb|3OWY|D Chain D, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM105C- Cn From P. Putida With Bound
Equilenin
pdb|3OWY|E Chain E, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM105C- Cn From P. Putida With Bound
Equilenin
pdb|3OWY|F Chain F, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM105C- Cn From P. Putida With Bound
Equilenin
pdb|3OWY|G Chain G, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM105C- Cn From P. Putida With Bound
Equilenin
pdb|3OWY|H Chain H, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM105C- Cn From P. Putida With Bound
Equilenin
Length = 131
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 293 GDLRVYLEMLAEAENVQRFIQHNPFGQSAITNRSEYWAFYLRAMN 337
GD+ ++M A+ V+ NPFGQ I R + AFY + +
Sbjct: 23 GDIEAIVQMYADDATVE-----NPFGQPPIHGREQIAAFYRQGLG 62
>pdb|3OWS|A Chain A, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM116C- Cn From P. Putida With Bound
Equilenin
pdb|3OWS|B Chain B, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM116C- Cn From P. Putida With Bound
Equilenin
pdb|3OWS|C Chain C, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM116C- Cn From P. Putida With Bound
Equilenin
pdb|3OWS|D Chain D, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM116C- Cn From P. Putida With Bound
Equilenin
pdb|3OXA|A Chain A, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM116C- Cn From P. Putida
pdb|3OXA|B Chain B, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM116C- Cn From P. Putida
pdb|3OXA|C Chain C, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM116C- Cn From P. Putida
pdb|3OXA|D Chain D, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM116C- Cn From P. Putida
Length = 131
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 293 GDLRVYLEMLAEAENVQRFIQHNPFGQSAITNRSEYWAFYLRAMN 337
GD+ ++M A+ V+ NPFGQ I R + AFY + +
Sbjct: 23 GDIEAIVQMYADDATVE-----NPFGQPPIHGREQIAAFYRQGLG 62
>pdb|3OWU|A Chain A, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SF86C-Cn From P. Putida With Bound
Equilenin
pdb|3OWU|B Chain B, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SF86C-Cn From P. Putida With Bound
Equilenin
pdb|3OWU|C Chain C, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SF86C-Cn From P. Putida With Bound
Equilenin
pdb|3OWU|D Chain D, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SF86C-Cn From P. Putida With Bound
Equilenin
pdb|3OX9|A Chain A, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SF86C-Cn From P. Putida
pdb|3OX9|B Chain B, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SF86C-Cn From P. Putida
pdb|3OX9|C Chain C, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SF86C-Cn From P. Putida
pdb|3OX9|D Chain D, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SF86C-Cn From P. Putida
Length = 131
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 293 GDLRVYLEMLAEAENVQRFIQHNPFGQSAITNRSEYWAFYLRAMN 337
GD+ ++M A+ V+ NPFGQ I R + AFY + +
Sbjct: 23 GDIEAIVQMYADDATVE-----NPFGQPPIHGREQIAAFYRQGLG 62
>pdb|1CQS|A Chain A, Crystal Structure Of D103e Mutant With Equilenineof Ksi In
Pseudomonas Putida
pdb|1CQS|B Chain B, Crystal Structure Of D103e Mutant With Equilenineof Ksi In
Pseudomonas Putida
Length = 131
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 293 GDLRVYLEMLAEAENVQRFIQHNPFGQSAITNRSEYWAFYLRAMN 337
GD+ ++M A+ V+ NPFGQ I R + AFY + +
Sbjct: 23 GDIEAIVQMYADDATVE-----NPFGQPPIHGREQIAAFYRQGLG 62
>pdb|3FZW|A Chain A, Crystal Structure Of Ketosteroid Isomerase D40n-D103n From
Pseudomonas Putida (Pksi) With Bound Equilenin
pdb|3FZW|B Chain B, Crystal Structure Of Ketosteroid Isomerase D40n-D103n From
Pseudomonas Putida (Pksi) With Bound Equilenin
Length = 131
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 293 GDLRVYLEMLAEAENVQRFIQHNPFGQSAITNRSEYWAFYLRAMN 337
GD+ ++M A+ V+ NPFGQ I R + AFY + +
Sbjct: 23 GDIEAIVQMYADDATVE-----NPFGQPPIHGREQIAAFYRQGLG 62
>pdb|1GS3|A Chain A, High Resolution Crystal Structure Of Pi Delta-5-3-
Ketosteroid Isomerase Mutants Y30fY55FY115F D38N
(Y32fY57FY119FD40N, PI NUMBERING)COMPLEXED WITH
Equilenin At 2.1 A Resolution
Length = 131
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 293 GDLRVYLEMLAEAENVQRFIQHNPFGQSAITNRSEYWAFYLRAMN 337
GD+ ++M A+ V+ NPFGQ I R + AF+ + +
Sbjct: 23 GDIEAIVQMFADDATVE-----NPFGQPPIHGREQIAAFFRQGLG 62
>pdb|1DMQ|A Chain A, Crystal Structure Of Mutant Enzyme Y32f Of Ketosteroid
Isomerase From Pseudomonas Putida Biotype B
Length = 131
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 293 GDLRVYLEMLAEAENVQRFIQHNPFGQSAITNRSEYWAFYLRAMN 337
GD+ ++M A+ V+ +PFGQ I R + AFY + +
Sbjct: 23 GDIEAIVQMFADDATVE-----DPFGQPPIHGREQIAAFYRQGLG 62
>pdb|1VZZ|A Chain A, Crystal Structure Of Mutant Enzyme Y32fD103L OF
Ketosteroid Isomerase From Pseudomonas Putida Biotype B
pdb|1VZZ|B Chain B, Crystal Structure Of Mutant Enzyme Y32fD103L OF
Ketosteroid Isomerase From Pseudomonas Putida Biotype B
Length = 131
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 293 GDLRVYLEMLAEAENVQRFIQHNPFGQSAITNRSEYWAFYLRAMN 337
GD+ ++M A+ V+ +PFGQ I R + AFY + +
Sbjct: 23 GDIEAIVQMFADDATVE-----DPFGQPPIHGREQIAAFYRQGLG 62
>pdb|1TA0|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein With Associated Ligand
Length = 197
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 76/194 (39%), Gaps = 51/194 (26%)
Query: 137 ADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFLM 196
AD + P + D + + V KRP +FL+ E F+ ++++ K + V D
Sbjct: 37 ADFIIP----VEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVAD--- 89
Query: 197 GDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWEISDPNCPWAKGDY------ 250
LL W ++A +F+E +C + +G+Y
Sbjct: 90 ------LLDKW--------------GAFRARLFRE----------SCVFHRGNYVKDLSR 119
Query: 251 ---NESNTVLLDDSPYKALLNPPYTAIFPCSYKYQNPSDNSLGAGGDLRVYLEMLAEAEN 307
+ ++LD+SP + +P P + + N SD L DL + E L+ ++
Sbjct: 120 LGRDLRRVLILDNSPASYVFHPDNAV--PVASWFDNMSDTEL---HDLLPFFEQLSRVDD 174
Query: 308 VQRFIQHNPFGQSA 321
V ++ G +A
Sbjct: 175 VYSVLRQPRPGSAA 188
>pdb|3C1U|A Chain A, D192n Mutant Of Rhamnogalacturonan Acetylesterase
Length = 233
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 20/86 (23%)
Query: 220 LENKYKALVFKELRKVWEISDPNCPWAKGDYNESNTVLLD-------------------- 259
LEN K K + + PN PW G + S T ++
Sbjct: 114 LENAAKLFTAKGAKVILSSQTPNNPWETGTFVNSPTRFVEYAELAAEVAGVEYVDHWSYV 173
Query: 260 DSPYKALLNPPYTAIFPCSYKYQNPS 285
DS Y+ L N + FP ++ + +P+
Sbjct: 174 DSIYETLGNATVNSYFPINHTHTSPA 199
>pdb|1DEO|A Chain A, Rhamnogalacturonan Acetylesterase From Aspergillus
Aculeatus At 1.55 A Resolution With So4 In The Active
Site
pdb|1DEX|A Chain A, Rhamnogalacturonan Acetylesterase From Aspergillus
Aculeatus At 1.9 A Resolution
pdb|1K7C|A Chain A, Rhamnogalacturonan Acetylesterase With Seven N-Linked
Carbohydrate Residues Distributed At Two N-Glycosylation
Sites Refined At 1.12 A Resolution
pdb|1PP4|A Chain A, The Crystal Structure Of Rhamnogalacturonan Acetylesterase
In Space Group P3121
pdb|1PP4|B Chain B, The Crystal Structure Of Rhamnogalacturonan Acetylesterase
In Space Group P3121
Length = 233
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 20/86 (23%)
Query: 220 LENKYKALVFKELRKVWEISDPNCPWAKGDYNESNTVLLD-------------------- 259
LEN K K + + PN PW G + S T ++
Sbjct: 114 LENAAKLFTAKGAKVILSSQTPNNPWETGTFVNSPTRFVEYAELAAEVAGVEYVDHWSYV 173
Query: 260 DSPYKALLNPPYTAIFPCSYKYQNPS 285
DS Y+ L N + FP + + +P+
Sbjct: 174 DSIYETLGNATVNSYFPIDHTHTSPA 199
>pdb|3L0Y|A Chain A, Crystal Structure Of Scp1 Phosphatase D98a Mutant
pdb|3L0Y|B Chain B, Crystal Structure Of Scp1 Phosphatase D98a Mutant
Length = 184
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 51/181 (28%)
Query: 137 ADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFLM 196
AD + P + D + + V KRP +FL+ E F+ ++++ K + V D
Sbjct: 40 ADFIIP----VEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVAD--- 92
Query: 197 GDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWEISDPNCPWAKGDY------ 250
LL W ++A +F+E +C + +G+Y
Sbjct: 93 ------LLDKW--------------GAFRARLFRE----------SCVFHRGNYVKDLSR 122
Query: 251 ---NESNTVLLDDSPYKALLNPPYTAIFPCSYKYQNPSDNSLGAGGDLRVYLEMLAEAEN 307
+ ++LD+SP + +P P + + N SD L DL + E L+ ++
Sbjct: 123 LGRDLRRVLILDNSPASYVFHPDNAV--PVASWFDNMSDTEL---HDLLPFFEQLSRVDD 177
Query: 308 V 308
V
Sbjct: 178 V 178
>pdb|2GHQ|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHQ|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
Length = 181
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 51/181 (28%)
Query: 137 ADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFLM 196
AD + P + D + + V KRP +FL+ E F+ ++++ K + V D
Sbjct: 37 ADFIIP----VEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVAD--- 89
Query: 197 GDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWEISDPNCPWAKGDY------ 250
LL W ++A +F+E +C + +G+Y
Sbjct: 90 ------LLDKW--------------GAFRARLFRE----------SCVFHRGNYVKDLSR 119
Query: 251 ---NESNTVLLDDSPYKALLNPPYTAIFPCSYKYQNPSDNSLGAGGDLRVYLEMLAEAEN 307
+ ++LD+SP + +P P + + N SD L DL + E L+ ++
Sbjct: 120 LGRDLRRVLILDNSPASYVFHPDNAV--PVASWFDNMSDTEL---HDLLPFFEQLSRVDD 174
Query: 308 V 308
V
Sbjct: 175 V 175
>pdb|3PGL|A Chain A, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
pdb|3PGL|B Chain B, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
Length = 180
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 51/181 (28%)
Query: 137 ADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFLM 196
AD + P + D + + V KRP +FL+ E F+ ++++ K + V D
Sbjct: 36 ADFIIP----VEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVAD--- 88
Query: 197 GDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWEISDPNCPWAKGDY------ 250
LL W ++A +F+E +C + +G+Y
Sbjct: 89 ------LLDKW--------------GAFRARLFRE----------SCVFHRGNYVKDLSR 118
Query: 251 ---NESNTVLLDDSPYKALLNPPYTAIFPCSYKYQNPSDNSLGAGGDLRVYLEMLAEAEN 307
+ ++LD+SP + +P P + + N SD L DL + E L+ ++
Sbjct: 119 LGRDLRRVLILDNSPASYVFHPDNAV--PVASWFDNMSDTEL---HDLLPFFEQLSRVDD 173
Query: 308 V 308
V
Sbjct: 174 V 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,489,449
Number of Sequences: 62578
Number of extensions: 358258
Number of successful extensions: 797
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 795
Number of HSP's gapped (non-prelim): 18
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)