Query 042807
Match_columns 343
No_of_seqs 213 out of 1092
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02245 HAD_IIID1 HAD-superf 100.0 1.1E-44 2.4E-49 330.0 15.6 184 107-312 2-188 (195)
2 KOG1605 TFIIF-interacting CTD 100.0 2.6E-37 5.5E-42 292.1 10.5 168 119-314 83-258 (262)
3 PF03031 NIF: NLI interacting 100.0 2.1E-34 4.5E-39 251.1 12.9 155 126-309 1-159 (159)
4 TIGR02251 HIF-SF_euk Dullard-l 100.0 7.2E-34 1.6E-38 251.3 15.2 154 125-307 1-162 (162)
5 TIGR02250 FCP1_euk FCP1-like p 99.9 7.7E-26 1.7E-30 199.5 12.2 134 122-281 3-155 (156)
6 KOG2832 TFIIF-interacting CTD 99.9 7.7E-26 1.7E-30 219.5 11.7 159 119-315 183-343 (393)
7 smart00577 CPDc catalytic doma 99.9 1.6E-21 3.4E-26 169.6 14.9 138 124-286 1-147 (148)
8 COG5190 FCP1 TFIIF-interacting 99.8 3.3E-21 7.3E-26 190.9 8.5 164 120-314 207-380 (390)
9 KOG0323 TFIIF-interacting CTD 99.3 3.8E-12 8.2E-17 133.1 9.7 131 126-281 147-298 (635)
10 TIGR01684 viral_ppase viral ph 97.7 6E-05 1.3E-09 73.3 5.8 60 122-196 123-184 (301)
11 PHA03398 viral phosphatase sup 97.5 0.00012 2.7E-09 71.2 5.7 61 122-197 125-187 (303)
12 TIGR01685 MDP-1 magnesium-depe 97.5 0.00017 3.8E-09 65.0 5.9 132 125-275 2-153 (174)
13 cd01427 HAD_like Haloacid deha 97.3 0.0004 8.6E-09 56.1 5.6 61 127-196 1-62 (139)
14 TIGR01662 HAD-SF-IIIA HAD-supe 97.2 0.00079 1.7E-08 56.5 6.4 62 126-196 1-71 (132)
15 TIGR01681 HAD-SF-IIIC HAD-supe 97.2 0.00049 1.1E-08 58.4 4.5 66 126-196 1-68 (128)
16 PRK08942 D,D-heptose 1,7-bisph 96.7 0.0057 1.2E-07 54.4 7.6 52 125-184 3-55 (181)
17 PF12689 Acid_PPase: Acid Phos 96.7 0.0024 5.3E-08 57.5 5.2 130 124-273 2-145 (169)
18 TIGR01686 FkbH FkbH-like domai 96.7 0.002 4.4E-08 62.8 4.8 65 124-194 2-67 (320)
19 TIGR00213 GmhB_yaeD D,D-heptos 96.6 0.007 1.5E-07 53.7 7.0 51 126-185 2-53 (176)
20 PF05152 DUF705: Protein of un 96.6 0.005 1.1E-07 59.7 6.3 60 123-196 120-180 (297)
21 TIGR01656 Histidinol-ppas hist 96.3 0.011 2.3E-07 51.0 6.6 53 126-185 1-54 (147)
22 COG5190 FCP1 TFIIF-interacting 95.9 0.0074 1.6E-07 60.9 4.0 120 122-265 23-158 (390)
23 TIGR01689 EcbF-BcbF capsule bi 95.9 0.026 5.5E-07 48.5 6.6 52 126-189 2-55 (126)
24 TIGR01664 DNA-3'-Pase DNA 3'-p 95.8 0.045 9.6E-07 48.7 8.0 58 123-185 11-69 (166)
25 TIGR01663 PNK-3'Pase polynucle 95.4 0.046 9.9E-07 57.4 7.8 71 121-196 164-247 (526)
26 TIGR01261 hisB_Nterm histidino 95.3 0.062 1.3E-06 47.6 7.1 65 126-196 2-82 (161)
27 TIGR01672 AphA HAD superfamily 95.2 0.034 7.4E-07 52.6 5.5 72 125-196 63-156 (237)
28 PF08645 PNK3P: Polynucleotide 95.0 0.052 1.1E-06 48.1 5.6 51 126-182 1-53 (159)
29 PRK13582 thrH phosphoserine ph 94.9 0.011 2.5E-07 52.8 1.3 40 157-196 66-105 (205)
30 PLN02954 phosphoserine phospha 94.4 0.03 6.5E-07 50.8 2.8 39 158-196 83-122 (224)
31 TIGR01533 lipo_e_P4 5'-nucleot 94.4 0.063 1.4E-06 51.7 5.1 74 123-196 73-156 (266)
32 KOG1872 Ubiquitin-specific pro 93.6 0.009 1.9E-07 61.1 -2.4 73 107-195 117-190 (473)
33 TIGR01670 YrbI-phosphatas 3-de 93.3 0.26 5.6E-06 42.9 6.5 64 126-196 2-66 (154)
34 COG0560 SerB Phosphoserine pho 93.2 0.086 1.9E-06 48.9 3.6 40 158-197 76-116 (212)
35 PRK06769 hypothetical protein; 93.1 0.21 4.5E-06 44.4 5.8 51 125-185 4-55 (173)
36 TIGR01668 YqeG_hyp_ppase HAD s 93.1 0.18 3.9E-06 44.7 5.3 57 123-195 23-81 (170)
37 PRK10187 trehalose-6-phosphate 92.9 0.18 4E-06 48.0 5.4 66 116-193 5-72 (266)
38 PRK00192 mannosyl-3-phosphogly 92.9 0.14 3.1E-06 48.4 4.6 55 125-196 4-59 (273)
39 COG4996 Predicted phosphatase 92.6 0.43 9.4E-06 41.8 6.7 73 127-199 2-82 (164)
40 COG0561 Cof Predicted hydrolas 92.4 0.25 5.5E-06 46.1 5.6 58 124-198 2-60 (264)
41 PHA02530 pseT polynucleotide k 92.4 0.36 7.8E-06 46.0 6.7 130 122-273 155-290 (300)
42 PRK03669 mannosyl-3-phosphogly 92.3 0.27 5.9E-06 46.4 5.8 58 122-196 4-62 (271)
43 TIGR02463 MPGP_rel mannosyl-3- 91.7 0.27 5.8E-06 44.7 4.7 53 127-196 1-54 (221)
44 PF08282 Hydrolase_3: haloacid 91.6 0.24 5.2E-06 44.4 4.3 52 128-196 1-53 (254)
45 PF13419 HAD_2: Haloacid dehal 91.5 0.29 6.3E-06 41.3 4.4 90 156-266 74-164 (176)
46 smart00775 LNS2 LNS2 domain. T 91.5 0.33 7.1E-06 42.8 4.9 62 127-194 1-66 (157)
47 PF13344 Hydrolase_6: Haloacid 91.4 0.4 8.7E-06 39.1 5.0 50 128-195 1-51 (101)
48 TIGR01487 SPP-like sucrose-pho 91.4 0.32 7E-06 44.1 4.9 56 126-198 2-58 (215)
49 TIGR01484 HAD-SF-IIB HAD-super 91.4 0.27 5.9E-06 43.9 4.4 53 127-195 1-54 (204)
50 PRK11133 serB phosphoserine ph 91.2 0.16 3.5E-06 50.0 3.0 78 119-196 104-219 (322)
51 PRK05446 imidazole glycerol-ph 91.1 0.61 1.3E-05 46.7 6.9 54 124-183 1-55 (354)
52 TIGR02461 osmo_MPG_phos mannos 91.0 0.37 8.1E-06 44.7 5.1 52 127-196 1-53 (225)
53 PRK08238 hypothetical protein; 91.0 0.25 5.5E-06 51.3 4.3 38 159-196 72-110 (479)
54 COG3882 FkbH Predicted enzyme 90.8 0.23 4.9E-06 51.6 3.6 125 121-272 218-347 (574)
55 PTZ00445 p36-lilke protein; Pr 90.5 0.27 5.8E-06 46.1 3.5 135 123-273 41-199 (219)
56 PRK11009 aphA acid phosphatase 90.4 0.37 7.9E-06 45.7 4.4 72 124-195 62-155 (237)
57 PRK12702 mannosyl-3-phosphogly 90.4 0.48 1.1E-05 46.5 5.3 55 125-196 1-56 (302)
58 PRK01158 phosphoglycolate phos 90.2 0.5 1.1E-05 42.9 5.1 55 125-196 3-58 (230)
59 PRK10513 sugar phosphate phosp 89.8 0.61 1.3E-05 43.6 5.4 55 125-196 3-58 (270)
60 PLN02645 phosphoglycolate phos 89.6 0.63 1.4E-05 45.3 5.5 53 125-195 28-81 (311)
61 TIGR02253 CTE7 HAD superfamily 89.5 0.75 1.6E-05 41.4 5.6 84 158-263 93-178 (221)
62 COG1877 OtsB Trehalose-6-phosp 89.2 0.65 1.4E-05 44.8 5.2 61 121-193 14-76 (266)
63 TIGR00099 Cof-subfamily Cof su 89.0 0.57 1.2E-05 43.6 4.5 53 127-196 1-54 (256)
64 TIGR01486 HAD-SF-IIB-MPGP mann 89.0 0.55 1.2E-05 43.8 4.5 53 127-196 1-54 (256)
65 TIGR01459 HAD-SF-IIA-hyp4 HAD- 88.6 0.73 1.6E-05 42.8 5.0 54 125-196 8-64 (242)
66 PRK10530 pyridoxal phosphate ( 88.6 1.1 2.3E-05 41.8 6.0 16 125-140 3-18 (272)
67 PRK10444 UMP phosphatase; Prov 87.9 1.2 2.5E-05 42.2 5.9 53 126-196 2-55 (248)
68 PRK15126 thiamin pyrimidine py 87.1 1.1 2.3E-05 42.2 5.2 16 125-140 2-17 (272)
69 PRK10976 putative hydrolase; P 86.7 1.2 2.6E-05 41.6 5.2 16 125-140 2-17 (266)
70 PLN02423 phosphomannomutase 85.9 1.4 3E-05 41.5 5.2 47 123-186 5-51 (245)
71 PLN02151 trehalose-phosphatase 84.6 1.3 2.9E-05 44.4 4.6 60 122-193 95-154 (354)
72 PRK13222 phosphoglycolate phos 84.4 2.3 4.9E-05 38.2 5.7 95 158-273 92-187 (226)
73 TIGR00685 T6PP trehalose-phosp 84.3 0.81 1.8E-05 42.7 2.8 48 124-183 2-51 (244)
74 COG2503 Predicted secreted aci 83.8 1.2 2.5E-05 42.8 3.6 58 120-177 74-140 (274)
75 PRK09484 3-deoxy-D-manno-octul 83.7 1.5 3.3E-05 39.2 4.2 65 124-196 20-86 (183)
76 PTZ00174 phosphomannomutase; P 83.6 1.8 4E-05 40.4 4.9 52 124-192 4-56 (247)
77 TIGR01428 HAD_type_II 2-haloal 83.6 1.9 4.1E-05 38.3 4.8 93 158-272 91-185 (198)
78 PRK13288 pyrophosphatase PpaX; 83.3 2.3 4.9E-05 38.3 5.3 96 157-273 80-176 (214)
79 TIGR01482 SPP-subfamily Sucros 83.2 1.8 3.9E-05 39.0 4.6 52 128-196 1-53 (225)
80 TIGR01458 HAD-SF-IIA-hyp3 HAD- 83.2 2.1 4.6E-05 40.5 5.2 48 126-187 2-50 (257)
81 TIGR01509 HAD-SF-IA-v3 haloaci 83.2 1.9 4.1E-05 37.2 4.5 86 158-266 84-171 (183)
82 PLN03243 haloacid dehalogenase 83.2 1.5 3.3E-05 41.6 4.2 94 158-273 108-203 (260)
83 TIGR02254 YjjG/YfnB HAD superf 83.1 1.8 3.8E-05 38.8 4.4 94 158-272 96-191 (224)
84 PRK09449 dUMP phosphatase; Pro 82.8 1.8 4E-05 39.1 4.5 38 158-195 94-131 (224)
85 TIGR01449 PGP_bact 2-phosphogl 82.6 1.9 4.1E-05 38.4 4.4 94 158-273 84-179 (213)
86 TIGR01454 AHBA_synth_RP 3-amin 82.5 2.6 5.6E-05 37.7 5.3 95 157-273 73-169 (205)
87 PLN02580 trehalose-phosphatase 82.1 2.1 4.6E-05 43.4 5.0 60 122-193 116-175 (384)
88 TIGR01675 plant-AP plant acid 81.4 1.8 3.9E-05 40.9 4.0 75 122-196 74-158 (229)
89 TIGR01485 SPP_plant-cyano sucr 81.3 1.8 3.9E-05 40.3 3.9 57 125-195 1-58 (249)
90 TIGR01452 PGP_euk phosphoglyco 81.1 3.6 7.8E-05 39.1 6.0 43 126-186 3-46 (279)
91 PRK11587 putative phosphatase; 81.1 3.4 7.4E-05 37.5 5.6 95 157-273 81-176 (218)
92 PRK14502 bifunctional mannosyl 80.5 3 6.4E-05 45.4 5.6 60 120-196 411-471 (694)
93 PHA02597 30.2 hypothetical pro 80.2 1 2.2E-05 40.1 1.8 38 157-194 72-109 (197)
94 PLN02770 haloacid dehalogenase 80.0 2.8 6E-05 39.2 4.7 95 158-273 107-202 (248)
95 TIGR01456 CECR5 HAD-superfamil 79.9 2.5 5.4E-05 41.4 4.5 49 127-193 2-59 (321)
96 TIGR01993 Pyr-5-nucltdase pyri 79.1 1.8 3.8E-05 38.1 3.0 34 160-195 85-118 (184)
97 PRK14501 putative bifunctional 79.1 2.7 5.9E-05 45.7 4.9 60 123-194 490-551 (726)
98 PRK14988 GMP/IMP nucleotidase; 78.8 3.7 8.1E-05 37.8 5.1 94 158-273 92-187 (224)
99 PLN03017 trehalose-phosphatase 78.7 3 6.5E-05 42.1 4.7 59 122-192 108-166 (366)
100 PF11019 DUF2608: Protein of u 78.7 6.7 0.00015 37.4 6.9 127 124-264 19-190 (252)
101 TIGR01544 HAD-SF-IE haloacid d 77.9 2.8 6.2E-05 40.7 4.2 40 156-195 118-158 (277)
102 PRK10725 fructose-1-P/6-phosph 77.7 1.2 2.7E-05 38.9 1.5 90 161-272 90-179 (188)
103 PLN02779 haloacid dehalogenase 77.6 3.9 8.4E-05 39.3 5.0 94 159-273 144-240 (286)
104 PRK11587 putative phosphatase; 77.2 1.2 2.6E-05 40.5 1.3 16 125-140 3-18 (218)
105 TIGR01549 HAD-SF-IA-v1 haloaci 77.1 5.6 0.00012 33.6 5.3 38 158-195 63-101 (154)
106 TIGR01548 HAD-SF-IA-hyp1 haloa 76.9 1.4 2.9E-05 39.4 1.6 81 161-263 108-189 (197)
107 PRK09552 mtnX 2-hydroxy-3-keto 76.7 4.3 9.3E-05 37.0 4.9 39 157-195 72-111 (219)
108 TIGR00338 serB phosphoserine p 76.7 8.3 0.00018 34.6 6.7 40 157-196 83-123 (219)
109 PLN02887 hydrolase family prot 76.7 4.6 0.0001 43.1 5.7 57 123-196 306-363 (580)
110 PLN02575 haloacid dehalogenase 76.4 4.3 9.2E-05 41.2 5.1 95 158-273 215-310 (381)
111 TIGR02252 DREG-2 REG-2-like, H 76.1 1.8 3.8E-05 38.6 2.1 36 159-195 105-141 (203)
112 COG0241 HisB Histidinol phosph 76.0 4 8.7E-05 37.3 4.4 51 124-182 4-55 (181)
113 PRK10725 fructose-1-P/6-phosph 76.0 3.1 6.8E-05 36.3 3.6 17 124-140 4-20 (188)
114 PRK10826 2-deoxyglucose-6-phos 75.8 3.6 7.8E-05 37.3 4.1 95 158-273 91-186 (222)
115 TIGR03351 PhnX-like phosphonat 75.5 1.7 3.6E-05 39.3 1.7 39 158-196 86-125 (220)
116 TIGR01460 HAD-SF-IIA Haloacid 75.3 4.4 9.6E-05 37.7 4.6 48 128-193 1-53 (236)
117 TIGR02009 PGMB-YQAB-SF beta-ph 75.1 1.4 3.1E-05 38.2 1.2 92 158-272 87-179 (185)
118 TIGR01457 HAD-SF-IIA-hyp2 HAD- 74.4 6.6 0.00014 36.9 5.6 39 126-182 2-41 (249)
119 TIGR01422 phosphonatase phosph 74.1 5.7 0.00012 36.8 5.0 96 158-273 98-195 (253)
120 PRK13223 phosphoglycolate phos 74.0 5.4 0.00012 37.9 4.9 95 158-273 100-195 (272)
121 TIGR01993 Pyr-5-nucltdase pyri 73.9 1.7 3.6E-05 38.2 1.3 14 127-140 2-15 (184)
122 TIGR02253 CTE7 HAD superfamily 73.9 1.8 3.9E-05 38.9 1.6 16 126-141 3-18 (221)
123 PRK13226 phosphoglycolate phos 73.8 6.4 0.00014 36.1 5.2 94 157-272 93-188 (229)
124 TIGR03333 salvage_mtnX 2-hydro 73.7 5.5 0.00012 36.2 4.7 40 157-196 68-108 (214)
125 COG4359 Uncharacterized conser 73.3 9.3 0.0002 35.5 5.9 42 157-198 71-113 (220)
126 PRK13288 pyrophosphatase PpaX; 73.1 2 4.4E-05 38.6 1.7 16 125-140 3-18 (214)
127 PRK13226 phosphoglycolate phos 73.0 1.8 3.8E-05 39.9 1.3 16 125-140 12-27 (229)
128 TIGR01691 enolase-ppase 2,3-di 72.4 6 0.00013 36.9 4.7 89 158-267 94-184 (220)
129 TIGR01548 HAD-SF-IA-hyp1 haloa 72.0 7.4 0.00016 34.6 5.1 14 127-140 2-15 (197)
130 COG1011 Predicted hydrolase (H 71.7 6.1 0.00013 35.4 4.5 88 158-266 98-185 (229)
131 PRK13223 phosphoglycolate phos 71.6 2.3 5E-05 40.5 1.8 17 124-140 12-28 (272)
132 PRK11590 hypothetical protein; 71.6 2.2 4.7E-05 38.9 1.6 38 159-196 95-134 (211)
133 PRK13478 phosphonoacetaldehyde 71.0 2.2 4.8E-05 40.1 1.5 97 158-273 100-197 (267)
134 TIGR01422 phosphonatase phosph 71.0 2.4 5.1E-05 39.4 1.7 15 126-140 3-17 (253)
135 TIGR02009 PGMB-YQAB-SF beta-ph 70.9 3.9 8.4E-05 35.5 2.9 15 126-140 2-16 (185)
136 PRK13478 phosphonoacetaldehyde 70.8 11 0.00023 35.4 6.1 16 125-140 4-19 (267)
137 TIGR02247 HAD-1A3-hyp Epoxide 70.7 2.5 5.4E-05 37.9 1.7 95 158-273 93-190 (211)
138 COG2179 Predicted hydrolase of 70.4 7.2 0.00016 35.4 4.5 59 122-196 25-84 (175)
139 PLN02770 haloacid dehalogenase 70.4 2.1 4.6E-05 39.9 1.2 16 125-140 22-37 (248)
140 PRK14988 GMP/IMP nucleotidase; 70.3 2.5 5.3E-05 39.0 1.6 16 124-139 9-24 (224)
141 PLN03243 haloacid dehalogenase 70.3 2.5 5.3E-05 40.2 1.6 18 123-140 22-39 (260)
142 PRK13225 phosphoglycolate phos 70.1 2.3 5E-05 40.8 1.4 91 159-273 142-233 (273)
143 PF09419 PGP_phosphatase: Mito 69.8 6.6 0.00014 35.4 4.2 58 122-195 38-105 (168)
144 TIGR01549 HAD-SF-IA-v1 haloaci 69.5 2 4.4E-05 36.3 0.8 14 127-140 1-14 (154)
145 PRK10748 flavin mononucleotide 69.5 2.2 4.7E-05 39.6 1.1 26 161-186 115-140 (238)
146 COG0546 Gph Predicted phosphat 69.2 3 6.5E-05 38.2 1.9 94 158-272 88-182 (220)
147 TIGR02254 YjjG/YfnB HAD superf 69.0 2.4 5.3E-05 37.9 1.3 16 126-141 2-17 (224)
148 PRK09456 ?-D-glucose-1-phospha 68.9 4.3 9.3E-05 36.3 2.8 95 158-273 83-179 (199)
149 TIGR01428 HAD_type_II 2-haloal 68.3 2.6 5.6E-05 37.4 1.2 15 126-140 2-16 (198)
150 TIGR01491 HAD-SF-IB-PSPlk HAD- 68.3 2.8 6.1E-05 36.8 1.5 39 158-196 79-118 (201)
151 PLN02779 haloacid dehalogenase 68.0 2.9 6.2E-05 40.2 1.6 17 124-140 39-55 (286)
152 TIGR01454 AHBA_synth_RP 3-amin 67.7 2 4.4E-05 38.4 0.5 13 128-140 1-13 (205)
153 TIGR01990 bPGM beta-phosphoglu 67.1 2.4 5.3E-05 36.8 0.8 85 159-267 87-173 (185)
154 PRK09449 dUMP phosphatase; Pro 66.8 2.7 5.9E-05 38.0 1.1 14 126-139 4-17 (224)
155 TIGR01493 HAD-SF-IA-v2 Haloaci 65.7 2.9 6.4E-05 36.1 1.1 80 158-264 89-168 (175)
156 PLN02940 riboflavin kinase 65.7 6.8 0.00015 39.4 3.8 96 158-273 92-188 (382)
157 TIGR02247 HAD-1A3-hyp Epoxide 65.2 3.8 8.2E-05 36.7 1.7 15 126-140 3-17 (211)
158 PRK10563 6-phosphogluconate ph 65.0 3.2 6.9E-05 37.5 1.2 92 158-273 87-180 (221)
159 PRK13222 phosphoglycolate phos 64.9 3.3 7.2E-05 37.1 1.3 16 125-140 6-21 (226)
160 COG4502 5'(3')-deoxyribonucleo 64.6 15 0.00032 32.8 5.1 37 159-195 68-106 (180)
161 TIGR02252 DREG-2 REG-2-like, H 64.4 8.6 0.00019 34.1 3.9 15 126-140 1-15 (203)
162 PRK13225 phosphoglycolate phos 64.3 11 0.00024 36.1 4.8 17 124-140 61-77 (273)
163 KOG3109 Haloacid dehalogenase- 64.1 10 0.00022 36.0 4.3 97 158-269 99-195 (244)
164 TIGR03351 PhnX-like phosphonat 64.0 12 0.00027 33.6 4.8 15 126-140 2-16 (220)
165 TIGR01449 PGP_bact 2-phosphogl 63.9 2.7 5.8E-05 37.5 0.5 13 128-140 1-13 (213)
166 TIGR01680 Veg_Stor_Prot vegeta 63.3 12 0.00026 36.4 4.9 74 124-197 100-184 (275)
167 PLN02382 probable sucrose-phos 63.2 18 0.00038 37.0 6.3 17 123-139 7-23 (413)
168 TIGR01491 HAD-SF-IB-PSPlk HAD- 62.9 13 0.00029 32.4 4.8 16 125-140 4-19 (201)
169 PRK10826 2-deoxyglucose-6-phos 62.8 3.8 8.3E-05 37.1 1.3 17 124-140 6-22 (222)
170 TIGR01488 HAD-SF-IB Haloacid D 62.3 14 0.00031 31.6 4.8 39 157-195 71-110 (177)
171 PF13419 HAD_2: Haloacid dehal 62.3 3.7 8.1E-05 34.4 1.0 13 128-140 1-13 (176)
172 TIGR00338 serB phosphoserine p 62.1 4.5 9.8E-05 36.4 1.6 18 123-140 12-29 (219)
173 TIGR01489 DKMTPPase-SF 2,3-dik 60.8 5 0.00011 34.7 1.6 39 157-195 70-109 (188)
174 PHA02597 30.2 hypothetical pro 60.4 9.9 0.00021 33.7 3.5 22 252-273 145-168 (197)
175 PRK10563 6-phosphogluconate ph 59.8 7.4 0.00016 35.1 2.6 16 125-140 4-19 (221)
176 PRK06698 bifunctional 5'-methy 59.6 16 0.00036 37.3 5.4 92 158-273 329-421 (459)
177 TIGR02137 HSK-PSP phosphoserin 59.4 15 0.00033 33.5 4.6 39 158-196 67-105 (203)
178 COG0647 NagD Predicted sugar p 59.1 16 0.00034 35.4 4.8 54 124-195 7-61 (269)
179 TIGR01509 HAD-SF-IA-v3 haloaci 58.7 4.8 0.0001 34.6 1.1 14 128-141 2-15 (183)
180 COG0637 Predicted phosphatase/ 57.9 5.2 0.00011 36.9 1.3 88 157-265 84-172 (221)
181 PF03767 Acid_phosphat_B: HAD 57.2 5.6 0.00012 37.3 1.4 73 123-196 70-153 (229)
182 PF08235 LNS2: LNS2 (Lipin/Ned 57.0 23 0.0005 31.6 5.2 63 127-195 1-64 (157)
183 PF02358 Trehalose_PPase: Treh 56.3 9 0.00019 35.4 2.6 51 129-191 1-53 (235)
184 TIGR02726 phenyl_P_delta pheny 54.6 39 0.00084 30.2 6.3 66 124-196 6-72 (169)
185 PF05116 S6PP: Sucrose-6F-phos 54.2 9.6 0.00021 35.9 2.4 52 125-194 2-55 (247)
186 PRK06698 bifunctional 5'-methy 53.3 6 0.00013 40.5 1.0 16 125-140 241-256 (459)
187 PLN02575 haloacid dehalogenase 52.3 8 0.00017 39.3 1.6 17 124-140 130-146 (381)
188 PLN02940 riboflavin kinase 50.4 7.6 0.00017 39.0 1.2 16 125-140 11-26 (382)
189 PF06941 NT5C: 5' nucleotidase 50.0 9.4 0.0002 34.1 1.6 29 158-186 72-101 (191)
190 TIGR02471 sucr_syn_bact_C sucr 50.0 7.1 0.00015 35.8 0.8 13 127-139 1-13 (236)
191 COG3769 Predicted hydrolase (H 49.9 50 0.0011 31.7 6.3 57 122-196 4-61 (274)
192 TIGR01545 YfhB_g-proteo haloac 49.5 9.4 0.0002 35.1 1.5 36 159-194 94-131 (210)
193 TIGR02137 HSK-PSP phosphoserin 49.1 8.6 0.00019 35.2 1.2 13 127-139 3-15 (203)
194 COG0637 Predicted phosphatase/ 48.8 16 0.00035 33.6 3.0 15 126-140 3-17 (221)
195 PRK09456 ?-D-glucose-1-phospha 48.6 9.6 0.00021 34.0 1.4 13 127-139 2-14 (199)
196 TIGR01488 HAD-SF-IB Haloacid D 46.3 8.9 0.00019 32.9 0.8 15 127-141 1-15 (177)
197 PRK09552 mtnX 2-hydroxy-3-keto 46.0 11 0.00024 34.2 1.4 16 125-140 3-18 (219)
198 PLN03063 alpha,alpha-trehalose 45.9 31 0.00067 38.3 5.0 63 123-194 505-569 (797)
199 KOG3120 Predicted haloacid deh 45.8 33 0.00072 32.8 4.5 38 157-194 82-121 (256)
200 PLN02919 haloacid dehalogenase 45.8 30 0.00065 39.6 5.1 93 160-273 162-256 (1057)
201 TIGR01990 bPGM beta-phosphoglu 44.7 21 0.00046 30.8 2.9 14 127-140 1-14 (185)
202 TIGR01489 DKMTPPase-SF 2,3-dik 43.8 36 0.00078 29.3 4.3 17 125-141 1-17 (188)
203 COG1011 Predicted hydrolase (H 43.6 14 0.00029 33.2 1.6 18 124-141 3-20 (229)
204 TIGR01490 HAD-SF-IB-hyp1 HAD-s 40.4 12 0.00026 33.1 0.7 39 158-196 86-125 (202)
205 PLN02205 alpha,alpha-trehalose 40.0 40 0.00086 37.8 4.8 58 123-194 594-653 (854)
206 TIGR01493 HAD-SF-IA-v2 Haloaci 39.0 8.4 0.00018 33.3 -0.5 13 128-140 2-14 (175)
207 PLN02811 hydrolase 38.7 37 0.0008 30.7 3.7 96 158-273 77-178 (220)
208 TIGR01511 ATPase-IB1_Cu copper 36.7 74 0.0016 33.7 6.0 61 122-196 382-443 (562)
209 PLN03064 alpha,alpha-trehalose 36.0 59 0.0013 37.0 5.3 70 123-195 589-660 (934)
210 TIGR01490 HAD-SF-IB-hyp1 HAD-s 36.0 45 0.00097 29.4 3.7 14 128-141 2-15 (202)
211 PF05822 UMPH-1: Pyrimidine 5' 35.6 37 0.0008 32.6 3.2 41 155-195 86-127 (246)
212 KOG2134 Polynucleotide kinase 30.9 83 0.0018 32.4 4.9 57 121-182 71-128 (422)
213 PF00702 Hydrolase: haloacid d 30.9 30 0.00065 30.3 1.7 40 157-196 125-165 (215)
214 PF12710 HAD: haloacid dehalog 30.7 62 0.0013 27.9 3.6 36 161-196 87-127 (192)
215 cd06537 CIDE_N_B CIDE_N domain 29.4 1E+02 0.0022 24.7 4.2 16 125-140 39-54 (81)
216 PF06941 NT5C: 5' nucleotidase 29.1 28 0.00062 31.0 1.2 25 256-280 139-166 (191)
217 PRK11590 hypothetical protein; 28.6 1E+02 0.0022 27.9 4.8 16 124-139 5-20 (211)
218 PLN02177 glycerol-3-phosphate 26.6 45 0.00097 35.1 2.3 19 176-194 124-142 (497)
219 PLN02919 haloacid dehalogenase 26.1 52 0.0011 37.8 2.9 17 124-140 74-90 (1057)
220 cd06539 CIDE_N_A CIDE_N domain 26.0 1.3E+02 0.0028 23.9 4.3 27 109-140 29-55 (78)
221 COG0546 Gph Predicted phosphat 25.2 1.5E+02 0.0033 26.9 5.3 17 124-140 3-19 (220)
222 PF06888 Put_Phosphatase: Puta 25.0 28 0.0006 33.0 0.4 15 127-141 2-16 (234)
223 PF00702 Hydrolase: haloacid d 24.7 1E+02 0.0023 26.8 4.1 12 251-262 194-205 (215)
224 PLN02499 glycerol-3-phosphate 24.0 54 0.0012 34.6 2.3 19 176-194 110-128 (498)
225 KOG1615 Phosphoserine phosphat 23.2 90 0.0019 29.4 3.3 131 123-270 14-191 (227)
226 cd06538 CIDE_N_FSP27 CIDE_N do 23.2 1.3E+02 0.0028 24.0 3.8 16 125-140 39-54 (79)
227 PF06888 Put_Phosphatase: Puta 22.7 1.3E+02 0.0028 28.5 4.4 38 157-194 69-109 (234)
228 TIGR02244 HAD-IG-Ncltidse HAD 22.7 1E+02 0.0023 30.9 4.0 40 156-195 181-221 (343)
229 TIGR01545 YfhB_g-proteo haloac 21.7 1.6E+02 0.0036 26.8 4.8 18 124-141 4-21 (210)
230 cd06536 CIDE_N_ICAD CIDE_N dom 20.8 1.7E+02 0.0037 23.4 4.0 17 124-140 41-57 (80)
231 smart00266 CAD Domains present 20.4 1.5E+02 0.0033 23.3 3.6 16 125-140 38-53 (74)
232 COG3700 AphA Acid phosphatase 20.2 1.1E+02 0.0023 28.6 3.1 76 123-212 61-142 (237)
No 1
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=100.00 E-value=1.1e-44 Score=330.01 Aligned_cols=184 Identities=26% Similarity=0.330 Sum_probs=151.4
Q ss_pred hhhhccccCCCC-CCCCCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcCceEEEEcCCch
Q 042807 107 LSRISLSSQFSA-PISRLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQ 185 (343)
Q Consensus 107 ~~~~~~~~~i~~-~~~~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~yEIvIwTSa~~ 185 (343)
+.++++++.++. ++++++|+||||||||||||+.+..+ ..++++||||++||++|+++|||+|||||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~kklLVLDLDeTLvh~~~~~~----------~~~~~kRP~l~eFL~~~~~~feIvVwTAa~~ 71 (195)
T TIGR02245 2 LLRRIEQYKIKLLNPPREGKKLLVLDIDYTLFDHRSPAE----------TGEELMRPYLHEFLTSAYEDYDIVIWSATSM 71 (195)
T ss_pred hhHHHHhcCccccCCCCCCCcEEEEeCCCceEcccccCC----------CceEEeCCCHHHHHHHHHhCCEEEEEecCCH
Confidence 457788888877 77899999999999999999865433 3478999999999999999999999999999
Q ss_pred HHHHHHHHHHcC--CCCceEEEEEecCceeeccccccccccccceeeecccccccCCCCCCCCCCCCCCCcEEEEECCch
Q 042807 186 KNVERVVDFLMG--DMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWEISDPNCPWAKGDYNESNTVLLDDSPY 263 (343)
Q Consensus 186 ~ya~~il~~Ldp--~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~~~~p~~p~~~G~rdl~ntIlIDDsp~ 263 (343)
+||+++++.++. ++.+++.++|++..|...+. ...+..++|||+.+|++++ +.++++|||||||+|.
T Consensus 72 ~ya~~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~----~~~g~~~vKdL~~lw~~l~-------~~~~~~ntiiVDd~p~ 140 (195)
T TIGR02245 72 KWIEIKMTELGVLTNPNYKITFLLDSTAMITVHT----PRRGKFDVKPLGVIWALLP-------EFYSMKNTIMFDDLRR 140 (195)
T ss_pred HHHHHHHHHhcccCCccceEEEEeccccceeeEe----eccCcEEEeecHHhhhhcc-------cCCCcccEEEEeCCHH
Confidence 999999998853 44567888886555543332 2334457999999998763 2379999999999999
Q ss_pred hcccCCCCceecCCCCCCCCCCCCCCCccchHHHHHHHhhcCcCHHHHH
Q 042807 264 KALLNPPYTAIFPCSYKYQNPSDNSLGAGGDLRVYLEMLAEAENVQRFI 312 (343)
Q Consensus 264 ~~~~qP~NgiiIP~~f~~~~~~D~~L~~L~~L~~yL~~La~~eDVr~~l 312 (343)
+|.+||+|||.|+ +|.+++.+|..+.+|+.|++||+.|+.++|||++.
T Consensus 141 ~~~~~P~N~i~I~-~f~~~~~~~~~D~eL~~L~~yL~~la~~~Dvr~~~ 188 (195)
T TIGR02245 141 NFLMNPQNGLKIR-PFKKAHANRGTDQELLKLTQYLKTIAELEDFSSLD 188 (195)
T ss_pred HHhcCCCCccccC-CccccCCCCcccHHHHHHHHHHHHHhcCcccchhh
Confidence 9999999999995 68876555556667779999999999999999943
No 2
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=2.6e-37 Score=292.13 Aligned_cols=168 Identities=24% Similarity=0.302 Sum_probs=144.1
Q ss_pred CCCCCCCcEEEEeCCCceeeecCCCCCCCCCCce--------ecceeEEeCCChHHHHHHHhcCceEEEEcCCchHHHHH
Q 042807 119 PISRLRKKLLVLDLNGLLADIVSPPPKDCKADKK--------IARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQKNVER 190 (343)
Q Consensus 119 ~~~~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~--------~~~~~v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~ 190 (343)
.....+|++|||||||||+|++...+....+||. ...++|.+|||+++||..+.++||+|||||+.+.||.+
T Consensus 83 ~~~~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~v~FTAs~~~Ya~~ 162 (262)
T KOG1605|consen 83 RLATVGRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKWYELVLFTASLEVYADP 162 (262)
T ss_pred ccccCCCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence 4567899999999999999998422222234543 34689999999999999999999999999999999999
Q ss_pred HHHHHcCCCCceEEEEEecCceeeccccccccccccceeeecccccccCCCCCCCCCCCCCCCcEEEEECCchhcccCCC
Q 042807 191 VVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPP 270 (343)
Q Consensus 191 il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~ 270 (343)
+++.||+.. ..+..+++|++|+...+ .|+|||+.+ | +|+++||||||+|.+|.+||+
T Consensus 163 v~D~LD~~~-~i~~~RlyR~~C~~~~g---------~yvKdls~~------------~-~dL~~viIiDNsP~sy~~~p~ 219 (262)
T KOG1605|consen 163 LLDILDPDR-KIISHRLYRDSCTLKDG---------NYVKDLSVL------------G-RDLSKVIIVDNSPQSYRLQPE 219 (262)
T ss_pred HHHHccCCC-CeeeeeecccceEeECC---------cEEEEccee------------c-cCcccEEEEcCChHHhccCcc
Confidence 999999844 46788999999998765 499999999 5 799999999999999999999
Q ss_pred CceecCCCCCCCCCCCCCCCccchHHHHHHHhhcCcCHHHHHhc
Q 042807 271 YTAIFPCSYKYQNPSDNSLGAGGDLRVYLEMLAEAENVQRFIQH 314 (343)
Q Consensus 271 NgiiIP~~f~~~~~~D~~L~~L~~L~~yL~~La~~eDVr~~lk~ 314 (343)
|||.| ++|.. +..|.+|. +|+|||++|+.++|||.+++.
T Consensus 220 NgIpI-~sw~~-d~~D~eLL---~LlpfLe~L~~~~Dvr~~l~~ 258 (262)
T KOG1605|consen 220 NGIPI-KSWFD-DPTDTELL---KLLPFLEALAFVDDVRPILAR 258 (262)
T ss_pred CCCcc-ccccc-CCChHHHH---HHHHHHHHhcccccHHHHHHH
Confidence 99888 56764 46687666 999999999999999999886
No 3
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=100.00 E-value=2.1e-34 Score=251.12 Aligned_cols=155 Identities=32% Similarity=0.380 Sum_probs=119.0
Q ss_pred cEEEEeCCCceeeecCCCCCCCCCCc----eecceeEEeCCChHHHHHHHhcCceEEEEcCCchHHHHHHHHHHcCCCCc
Q 042807 126 KLLVLDLNGLLADIVSPPPKDCKADK----KIARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFLMGDMKH 201 (343)
Q Consensus 126 klLVLDLDeTLi~~~~~~~~~~~~Df----~~~~~~v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il~~Ldp~~~~ 201 (343)
|||||||||||+|+...... ..|+ ....+++++|||+++||++|+++|||+|||++++.||++|++.|+|++.
T Consensus 1 k~LVlDLD~TLv~~~~~~~~--~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~~- 77 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPL--PYDFKIIDQRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPVLDALDPNGK- 77 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCT--T-SEEEETEEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHHHHHTTTTS-
T ss_pred CEEEEeCCCcEEEEeecCCC--CcccceeccccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhhhHHHHhhhhhcc-
Confidence 69999999999999865432 2333 2457899999999999999999999999999999999999999999643
Q ss_pred eEEEEEecCceeeccccccccccccceeeecccccccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCceecCCCCCC
Q 042807 202 KLLFCWDLSYCTATSFKALENKYKALVFKELRKVWEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTAIFPCSYKY 281 (343)
Q Consensus 202 ~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~NgiiIP~~f~~ 281 (343)
.+.++|+|++|....+ .++|||+++ | +++++||||||+|.++..||+|+|.|| +|.+
T Consensus 78 ~~~~~~~r~~~~~~~~---------~~~KdL~~l------------~-~~~~~vvivDD~~~~~~~~~~N~i~v~-~f~~ 134 (159)
T PF03031_consen 78 LFSRRLYRDDCTFDKG---------SYIKDLSKL------------G-RDLDNVVIVDDSPRKWALQPDNGIPVP-PFFG 134 (159)
T ss_dssp SEEEEEEGGGSEEETT---------EEE--GGGS------------S-S-GGGEEEEES-GGGGTTSGGGEEE-----SS
T ss_pred cccccccccccccccc---------ccccchHHH------------h-hccccEEEEeCCHHHeeccCCceEEec-cccC
Confidence 4789999999985432 257999999 4 899999999999999999999999995 5887
Q ss_pred CCCCCCCCCccchHHHHHHHhhcCcCHH
Q 042807 282 QNPSDNSLGAGGDLRVYLEMLAEAENVQ 309 (343)
Q Consensus 282 ~~~~D~~L~~L~~L~~yL~~La~~eDVr 309 (343)
+..+|++|. .|++||+.|+.++|||
T Consensus 135 ~~~~D~~L~---~l~~~L~~l~~~~Dvr 159 (159)
T PF03031_consen 135 DTPNDRELL---RLLPFLEELAKEDDVR 159 (159)
T ss_dssp CHTT--HHH---HHHHHHHHHHTHS-CH
T ss_pred CCcchhHHH---HHHHHHHHhCcccCCC
Confidence 534576555 9999999999999998
No 4
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=7.2e-34 Score=251.34 Aligned_cols=154 Identities=30% Similarity=0.375 Sum_probs=132.3
Q ss_pred CcEEEEeCCCceeeecCCCCCCCCCCce--------ecceeEEeCCChHHHHHHHhcCceEEEEcCCchHHHHHHHHHHc
Q 042807 125 KKLLVLDLNGLLADIVSPPPKDCKADKK--------IARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 125 KklLVLDLDeTLi~~~~~~~~~~~~Df~--------~~~~~v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il~~Ld 196 (343)
|+||||||||||||+...+.. ...|+. ...+++++|||+++||++|+++|+|+||||+++.||+++++.++
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il~~ld 79 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPK-VDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEYADPVLDILD 79 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCC-CCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHHHHHC
Confidence 689999999999999765432 245553 23689999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEecCceeeccccccccccccceeeecccccccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCceecC
Q 042807 197 GDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTAIFP 276 (343)
Q Consensus 197 p~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~NgiiIP 276 (343)
|... .+.++++|++|....+ .++|||+++ | ++++++|||||+|.++..||+|||.|
T Consensus 80 p~~~-~f~~~l~r~~~~~~~~---------~~~K~L~~l------------~-~~~~~vIiVDD~~~~~~~~~~NgI~i- 135 (162)
T TIGR02251 80 RGGK-VISRRLYRESCVFTNG---------KYVKDLSLV------------G-KDLSKVIIIDNSPYSYSLQPDNAIPI- 135 (162)
T ss_pred cCCC-EEeEEEEccccEEeCC---------CEEeEchhc------------C-CChhhEEEEeCChhhhccCccCEeec-
Confidence 8642 4788999999976432 389999999 4 89999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCccchHHHHHHHhhcCcC
Q 042807 277 CSYKYQNPSDNSLGAGGDLRVYLEMLAEAEN 307 (343)
Q Consensus 277 ~~f~~~~~~D~~L~~L~~L~~yL~~La~~eD 307 (343)
.+|.++ .+|++|. .|++||+.|+.++|
T Consensus 136 ~~f~~~-~~D~~L~---~l~~~L~~l~~~~~ 162 (162)
T TIGR02251 136 KSWFGD-PNDTELL---NLIPFLEGLRFEDD 162 (162)
T ss_pred CCCCCC-CCHHHHH---HHHHHHHHHhccCC
Confidence 468864 6787666 99999999999876
No 5
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.93 E-value=7.7e-26 Score=199.54 Aligned_cols=134 Identities=22% Similarity=0.243 Sum_probs=108.4
Q ss_pred CCCCcEEEEeCCCceeeecCCCCCCC-------------CCC---cee--cceeEEeCCChHHHHHHHhcCceEEEEcCC
Q 042807 122 RLRKKLLVLDLNGLLADIVSPPPKDC-------------KAD---KKI--ARHAVFKRPFCHDFLRFCFERFDVGVWSSR 183 (343)
Q Consensus 122 ~~~KklLVLDLDeTLi~~~~~~~~~~-------------~~D---f~~--~~~~v~~RP~L~eFL~~l~~~yEIvIwTSa 183 (343)
..+|++||||||+||||+...+..+. ..| |.. ...++.+|||+.+||+.|++.|+++|||++
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~T~~ 82 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVYTMG 82 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEEeCC
Confidence 45899999999999999976532111 012 222 346899999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCCCceE-EEEEecCceeeccccccccccccceeeecccccccCCCCCCCCCCCCCCCcEEEEECCc
Q 042807 184 TQKNVERVVDFLMGDMKHKL-LFCWDLSYCTATSFKALENKYKALVFKELRKVWEISDPNCPWAKGDYNESNTVLLDDSP 262 (343)
Q Consensus 184 ~~~ya~~il~~Ldp~~~~~i-~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~~~~p~~p~~~G~rdl~ntIlIDDsp 262 (343)
.+.||+++++.++|...+ + ..+++|++|. + .++|||+.++ ++++++||||||+|
T Consensus 83 ~~~yA~~vl~~ldp~~~~-F~~ri~~rd~~~--~----------~~~KdL~~i~------------~~d~~~vvivDd~~ 137 (156)
T TIGR02250 83 TRAYAQAIAKLIDPDGKY-FGDRIISRDESG--S----------PHTKSLLRLF------------PADESMVVIIDDRE 137 (156)
T ss_pred cHHHHHHHHHHhCcCCCe-eccEEEEeccCC--C----------CccccHHHHc------------CCCcccEEEEeCCH
Confidence 999999999999997532 3 2357899995 1 3789997774 38999999999999
Q ss_pred hhcccCCCCceecCCCCCC
Q 042807 263 YKALLNPPYTAIFPCSYKY 281 (343)
Q Consensus 263 ~~~~~qP~NgiiIP~~f~~ 281 (343)
..|..||+|+|.| ++|..
T Consensus 138 ~~~~~~~~N~i~i-~~~~~ 155 (156)
T TIGR02250 138 DVWPWHKRNLIQI-EPYNY 155 (156)
T ss_pred HHhhcCccCEEEe-CCccc
Confidence 9999999999998 56753
No 6
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.93 E-value=7.7e-26 Score=219.54 Aligned_cols=159 Identities=21% Similarity=0.186 Sum_probs=142.1
Q ss_pred CCCCCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcCceEEEEcCCchHHHHHHHHHHcCC
Q 042807 119 PISRLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFLMGD 198 (343)
Q Consensus 119 ~~~~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il~~Ldp~ 198 (343)
+|..+.++||||||.++|||..++.. .+|.+.+||+++.||..|+++||||||||.+..|+.++++.+||+
T Consensus 183 pPy~Qp~yTLVleledvLVhpdws~~---------tGwRf~kRPgvD~FL~~~a~~yEIVi~sse~gmt~~pl~d~lDP~ 253 (393)
T KOG2832|consen 183 PPYEQPPYTLVLELEDVLVHPDWSYK---------TGWRFKKRPGVDYFLGHLAKYYEIVVYSSEQGMTVFPLLDALDPK 253 (393)
T ss_pred CcccCCCceEEEEeeeeEeccchhhh---------cCceeccCchHHHHHHhhcccceEEEEecCCccchhhhHhhcCCc
Confidence 45568899999999999999876554 368999999999999999999999999999999999999999998
Q ss_pred CCceEEEEEecCceeeccccccccccccceeeecccccccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCceecCCC
Q 042807 199 MKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTAIFPCS 278 (343)
Q Consensus 199 ~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~NgiiIP~~ 278 (343)
+ .|.+.++|++|.+..+ +++|||++| +||++++|+||-.+..+.+||+|++.+ ++
T Consensus 254 g--~IsYkLfr~~t~y~~G---------~HvKdls~L-------------NRdl~kVivVd~d~~~~~l~P~N~l~l-~~ 308 (393)
T KOG2832|consen 254 G--YISYKLFRGATKYEEG---------HHVKDLSKL-------------NRDLQKVIVVDFDANSYKLQPENMLPL-EP 308 (393)
T ss_pred c--eEEEEEecCcccccCc---------cchhhhhhh-------------ccccceeEEEEccccccccCccccccc-Cc
Confidence 4 5889999999986553 579999999 799999999999999999999999988 56
Q ss_pred CCCCCCCCCCCCccchHHHHHHHhh--cCcCHHHHHhcC
Q 042807 279 YKYQNPSDNSLGAGGDLRVYLEMLA--EAENVQRFIQHN 315 (343)
Q Consensus 279 f~~~~~~D~~L~~L~~L~~yL~~La--~~eDVr~~lk~~ 315 (343)
|.|+ .+|..|. +|++||+.|+ +++|||++|+.+
T Consensus 309 W~Gn-~dDt~L~---dL~~FL~~ia~~~~eDvR~vL~~y 343 (393)
T KOG2832|consen 309 WSGN-DDDTSLF---DLLAFLEYIAQQQVEDVRPVLQSY 343 (393)
T ss_pred CCCC-cccchhh---hHHHHHHHHHHccHHHHHHHHHHh
Confidence 8874 6787777 9999999998 568999999983
No 7
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.87 E-value=1.6e-21 Score=169.58 Aligned_cols=138 Identities=26% Similarity=0.265 Sum_probs=111.6
Q ss_pred CCcEEEEeCCCceeeecCCCCCC-CCCCce--------ecceeEEeCCChHHHHHHHhcCceEEEEcCCchHHHHHHHHH
Q 042807 124 RKKLLVLDLNGLLADIVSPPPKD-CKADKK--------IARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDF 194 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~~~~~~~-~~~Df~--------~~~~~v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il~~ 194 (343)
+|++|||||||||+|+......+ ...++. ...+.+..|||+.+||++|.+.|+++|||++.+.|++.+++.
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~~~il~~ 80 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGLRMYADPVLDL 80 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCcHHHHHHHHHH
Confidence 58999999999999986321111 222222 236789999999999999999999999999999999999999
Q ss_pred HcCCCCceEEEEEecCceeeccccccccccccceeeecccccccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCcee
Q 042807 195 LMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTAI 274 (343)
Q Consensus 195 Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngii 274 (343)
++... +.+.+++++++|... |+.+.|+|+++ | .+.+++|+|||++..+..+|.|||.
T Consensus 81 l~~~~-~~f~~i~~~~d~~~~---------KP~~~k~l~~l------------~-~~p~~~i~i~Ds~~~~~aa~~ngI~ 137 (148)
T smart00577 81 LDPKK-YFGYRRLFRDECVFV---------KGKYVKDLSLL------------G-RDLSNVIIIDDSPDSWPFHPENLIP 137 (148)
T ss_pred hCcCC-CEeeeEEECcccccc---------CCeEeecHHHc------------C-CChhcEEEEECCHHHhhcCccCEEE
Confidence 97743 335778999999632 22489999999 3 8999999999999999999999999
Q ss_pred cCCCCCCCCCCC
Q 042807 275 FPCSYKYQNPSD 286 (343)
Q Consensus 275 IP~~f~~~~~~D 286 (343)
| ++|.++ .+|
T Consensus 138 i-~~f~~~-~~d 147 (148)
T smart00577 138 I-KPWFGD-PDD 147 (148)
T ss_pred e-cCcCCC-CCC
Confidence 9 679876 344
No 8
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.84 E-value=3.3e-21 Score=190.95 Aligned_cols=164 Identities=22% Similarity=0.232 Sum_probs=138.8
Q ss_pred CCCCCCcEEEEeCCCceeeecCCCCCCCCCCce--------ecceeEEeCCChHHHHHHHhcCceEEEEcCCchHHHHHH
Q 042807 120 ISRLRKKLLVLDLNGLLADIVSPPPKDCKADKK--------IARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERV 191 (343)
Q Consensus 120 ~~~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~--------~~~~~v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~i 191 (343)
.....+++|++|||+||+|+.+.... ..||. ...+++.+||+|++||..+++.|++++||++.+.|++++
T Consensus 207 ~~~~~~k~L~l~lde~l~~S~~~~~~--~~df~~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v 284 (390)
T COG5190 207 KSTSPKKTLVLDLDETLVHSSFRYIT--LLDFLVKVEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADPV 284 (390)
T ss_pred cCCCCccccccCCCccceeecccccc--ccchhhccccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcchH
Confidence 45678999999999999999865442 22332 356899999999999999999999999999999999999
Q ss_pred HHHHcCCCCceEEEEEecCceeeccccccccccccceeeecccccccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCC
Q 042807 192 VDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPY 271 (343)
Q Consensus 192 l~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~N 271 (343)
++.|++.. .+..+++|++|.... ++ ++|||+++ | +++..||+||++|.++.++|+|
T Consensus 285 ~d~l~~~k--~~~~~lfr~sc~~~~--------G~-~ikDis~i------------~-r~l~~viiId~~p~SY~~~p~~ 340 (390)
T COG5190 285 LDILDSDK--VFSHRLFRESCVSYL--------GV-YIKDISKI------------G-RSLDKVIIIDNSPASYEFHPEN 340 (390)
T ss_pred HHhccccc--eeehhhhcccceecc--------Cc-hhhhHHhh------------c-cCCCceEEeeCChhhhhhCccc
Confidence 99999875 678899999998643 33 89999999 4 9999999999999999999999
Q ss_pred ceecCCCCCCCCCCCCCCCccchHHHHHHHhhc--CcCHHHHHhc
Q 042807 272 TAIFPCSYKYQNPSDNSLGAGGDLRVYLEMLAE--AENVQRFIQH 314 (343)
Q Consensus 272 giiIP~~f~~~~~~D~~L~~L~~L~~yL~~La~--~eDVr~~lk~ 314 (343)
+|+|| +|..+ ..|.+|. .|+++|+.|.. +.||+..+..
T Consensus 341 ~i~i~-~W~~d-~~d~el~---~ll~~le~L~~~~~~d~~~~l~~ 380 (390)
T COG5190 341 AIPIE-KWISD-EHDDELL---NLLPFLEDLPDRDLKDVSSILQS 380 (390)
T ss_pred eeccC-ccccc-ccchhhh---hhcccccccccccchhhhhhhhh
Confidence 99985 48765 4455555 99999999997 7899987654
No 9
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.33 E-value=3.8e-12 Score=133.09 Aligned_cols=131 Identities=19% Similarity=0.169 Sum_probs=99.5
Q ss_pred cEEEEeCCCceeeecCCCCC----------C----CCCCce-e------cceeEEeCCChHHHHHHHhcCceEEEEcCCc
Q 042807 126 KLLVLDLNGLLADIVSPPPK----------D----CKADKK-I------ARHAVFKRPFCHDFLRFCFERFDVGVWSSRT 184 (343)
Q Consensus 126 klLVLDLDeTLi~~~~~~~~----------~----~~~Df~-~------~~~~v~~RP~L~eFL~~l~~~yEIvIwTSa~ 184 (343)
..||+|||.||+|+.-.... . ...|.. + ..+++.+||++++||+++++.|++.|||-|.
T Consensus 147 L~lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~ 226 (635)
T KOG0323|consen 147 LHLVLDLDHTLLHTILKSDLSETEKYLKEEAESVESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGT 226 (635)
T ss_pred ceeehhhhhHHHHhhccchhhhhhhhcccccccccccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccc
Confidence 48999999999998632110 0 111211 1 2489999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeecccccccCCCCCCCCCCCCCCCcEEEEECCchh
Q 042807 185 QKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWEISDPNCPWAKGDYNESNTVLLDDSPYK 264 (343)
Q Consensus 185 ~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~~~~p~~p~~~G~rdl~ntIlIDDsp~~ 264 (343)
..||..|++.|||.+.+.=..++.|+.- . ..-.+||..++ ..+.+++|+|||....
T Consensus 227 R~YA~~i~~liDP~~~lF~dRIisrde~---~---------~~kt~dL~~~~------------p~g~smvvIIDDr~dV 282 (635)
T KOG0323|consen 227 RDYALEIAKLIDPEGKYFGDRIISRDES---P---------FFKTLDLVLLF------------PCGDSMVVIIDDRSDV 282 (635)
T ss_pred hHHHHHHHHHhCCCCccccceEEEecCC---C---------cccccccccCC------------CCCCccEEEEeCcccc
Confidence 9999999999999875432335566541 1 13468888773 4778999999999999
Q ss_pred cccCCCCceecCCCCCC
Q 042807 265 ALLNPPYTAIFPCSYKY 281 (343)
Q Consensus 265 ~~~qP~NgiiIP~~f~~ 281 (343)
|..++.|.|.| .+|.+
T Consensus 283 W~~~~~nLI~i-~~y~y 298 (635)
T KOG0323|consen 283 WPDHKRNLIQI-APYPY 298 (635)
T ss_pred ccCCCcceEEe-eeeec
Confidence 99999998877 55543
No 10
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=97.69 E-value=6e-05 Score=73.29 Aligned_cols=60 Identities=22% Similarity=0.161 Sum_probs=52.4
Q ss_pred CCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeC-CChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 122 RLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKR-PFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 122 ~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~R-P~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
...++++|+||||||+.... .+..| |++.+.|++|.+. +-++|||++...++..+++.+.
T Consensus 123 ~~~~kvIvFDLDgTLi~~~~---------------~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lG 184 (301)
T TIGR01684 123 FEPPHVVVFDLDSTLITDEE---------------PVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVK 184 (301)
T ss_pred cccceEEEEecCCCCcCCCC---------------ccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcC
Confidence 34578999999999999642 46789 9999999999986 8999999999999999999864
No 11
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.55 E-value=0.00012 Score=71.18 Aligned_cols=61 Identities=25% Similarity=0.212 Sum_probs=53.2
Q ss_pred CCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeC-CChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHcC
Q 042807 122 RLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKR-PFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLMG 197 (343)
Q Consensus 122 ~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~R-P~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ldp 197 (343)
...++++|+||||||+.... .+..| |+..+.|+.|.+. +-++|||++...++..+++.+.-
T Consensus 125 ~~~~~~i~~D~D~TL~~~~~---------------~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL 187 (303)
T PHA03398 125 WEIPHVIVFDLDSTLITDEE---------------PVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKL 187 (303)
T ss_pred eeeccEEEEecCCCccCCCC---------------ccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCC
Confidence 35679999999999999742 47789 9999999999985 99999999999999999998653
No 12
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.52 E-value=0.00017 Score=65.02 Aligned_cols=132 Identities=11% Similarity=-0.025 Sum_probs=81.7
Q ss_pred CcEEEEeCCCceeeecCCC---CC-----CCCCCce-ecceeEEeCCChHHHHHHHhc-CceEEEEcCC-chHHHHHHHH
Q 042807 125 KKLLVLDLNGLLADIVSPP---PK-----DCKADKK-IARHAVFKRPFCHDFLRFCFE-RFDVGVWSSR-TQKNVERVVD 193 (343)
Q Consensus 125 KklLVLDLDeTLi~~~~~~---~~-----~~~~Df~-~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTSa-~~~ya~~il~ 193 (343)
++++|+|||+||+.+.-.. +. +...+.. .....+..+|++.++|+.|.+ .+.++|=|++ ...+++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~ 81 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILG 81 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH
Confidence 4789999999999875211 00 1111111 234577889999999999985 5999999988 9999999999
Q ss_pred HHcCC---CCce----EEEEEecCceeeccccccccccccceeeecccccccCCCCCCCCCC--CCCCCcEEEEECCchh
Q 042807 194 FLMGD---MKHK----LLFCWDLSYCTATSFKALENKYKALVFKELRKVWEISDPNCPWAKG--DYNESNTVLLDDSPYK 264 (343)
Q Consensus 194 ~Ldp~---~~~~----i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~~~~p~~p~~~G--~rdl~ntIlIDDsp~~ 264 (343)
.+.-. .++. |..+...+. . ...|....++.... ..+ +.+.+++|+|||++..
T Consensus 82 ~~~l~~~~~~~~~~~~Fd~iv~~~~----------~----~~~kp~~~i~~~~~-----~~~~~gl~p~e~l~VgDs~~d 142 (174)
T TIGR01685 82 TFEITYAGKTVPMHSLFDDRIEIYK----------P----NKAKQLEMILQKVN-----KVDPSVLKPAQILFFDDRTDN 142 (174)
T ss_pred hCCcCCCCCcccHHHhceeeeeccC----------C----chHHHHHHHHHHhh-----hcccCCCCHHHeEEEcChhHh
Confidence 86521 1111 122211110 0 11233323222210 000 2688999999999998
Q ss_pred cccCCCCceec
Q 042807 265 ALLNPPYTAIF 275 (343)
Q Consensus 265 ~~~qP~NgiiI 275 (343)
...--.+|+..
T Consensus 143 i~aA~~aGi~~ 153 (174)
T TIGR01685 143 VREVWGYGVTS 153 (174)
T ss_pred HHHHHHhCCEE
Confidence 88777777633
No 13
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.34 E-value=0.0004 Score=56.08 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=50.3
Q ss_pred EEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 127 LLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 127 lLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
++|||+||||+...+.... ......+|++.++|+.+.++ +.++|.|++...++..+++.+.
T Consensus 1 ~~vfD~D~tl~~~~~~~~~---------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~ 62 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE---------IEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELG 62 (139)
T ss_pred CeEEccCCceEccCccccc---------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcC
Confidence 5899999999997532111 22467899999999999986 9999999999999999998753
No 14
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.24 E-value=0.00079 Score=56.47 Aligned_cols=62 Identities=31% Similarity=0.312 Sum_probs=47.4
Q ss_pred cEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCc--------hHHHHHHHHHHc
Q 042807 126 KLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRT--------QKNVERVVDFLM 196 (343)
Q Consensus 126 klLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~--------~~ya~~il~~Ld 196 (343)
++|+||+||||++.. ....+ .......|++.++|++|.+. +.++|-|.+. ..++..+++.+.
T Consensus 1 k~~~~D~dgtL~~~~-~~~~~--------~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~ 71 (132)
T TIGR01662 1 KGVVLDLDGTLTDDV-PYVDD--------EDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELG 71 (132)
T ss_pred CEEEEeCCCceecCC-CCCCC--------HHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCC
Confidence 579999999999631 11100 12456789999999999864 9999999998 778888888764
No 15
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=97.17 E-value=0.00049 Score=58.41 Aligned_cols=66 Identities=17% Similarity=0.065 Sum_probs=47.5
Q ss_pred cEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc-CceEEEEcCC-chHHHHHHHHHHc
Q 042807 126 KLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE-RFDVGVWSSR-TQKNVERVVDFLM 196 (343)
Q Consensus 126 klLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTSa-~~~ya~~il~~Ld 196 (343)
++||+||||||+....... ..+..+.. . ...|++.++|+.+.+ .+.++|.|++ .+.++..+++...
T Consensus 1 kli~~DlD~Tl~~~~~~~~---~~~~~~~~-~-~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVV---GEDPIIDL-E-VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred CEEEEeCCCCCCCCCcccc---cCCcchhh-H-HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence 5899999999998731100 00000000 0 467999999999976 6999999999 8999999988753
No 16
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.73 E-value=0.0057 Score=54.35 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=39.5
Q ss_pred CcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCc
Q 042807 125 KKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRT 184 (343)
Q Consensus 125 KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~ 184 (343)
.|.|+||+||||+....... .........|++.++|++|.+. |.++|-|+++
T Consensus 3 ~~~~~~d~~~t~~~~~~~~~--------~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDGYV--------KSPDEWIPIPGSIEAIARLKQAGYRVVVATNQS 55 (181)
T ss_pred ccEEEEECCCCcccCCcccc--------CCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 58899999999977642111 1112456789999999999985 9999999876
No 17
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=96.72 E-value=0.0024 Score=57.46 Aligned_cols=130 Identities=17% Similarity=0.108 Sum_probs=67.3
Q ss_pred CCcEEEEeCCCceeeecCCCC--CC---CCCC-ce--ecceeEEeCCChHHHHHHHhc-CceEEEEcC-CchHHHHHHHH
Q 042807 124 RKKLLVLDLNGLLADIVSPPP--KD---CKAD-KK--IARHAVFKRPFCHDFLRFCFE-RFDVGVWSS-RTQKNVERVVD 193 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~~~~~--~~---~~~D-f~--~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTS-a~~~ya~~il~ 193 (343)
-++++|+|||+||....-.-. .| ...+ -. ..+..+..-|.+.+.|+.|.+ ...+++=|. ..+++|..+|+
T Consensus 2 ~PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~ 81 (169)
T PF12689_consen 2 LPKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLK 81 (169)
T ss_dssp S-SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHH
T ss_pred CCcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHH
Confidence 468999999999998742111 01 1111 11 246788999999999999996 699999884 57899999999
Q ss_pred HHcCC---CCc-eEEEEEecCceeeccccccccccccceeeecccccccCCCCCCCCCCCCCCCcEEEEECCchhcccCC
Q 042807 194 FLMGD---MKH-KLLFCWDLSYCTATSFKALENKYKALVFKELRKVWEISDPNCPWAKGDYNESNTVLLDDSPYKALLNP 269 (343)
Q Consensus 194 ~Ldp~---~~~-~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP 269 (343)
.+.-. ... ....+++ . .... .+.|..+++.|.+=- | .+-+.++.+||...+...--
T Consensus 82 ~l~i~~~~~~~~~~~~~F~--~-~eI~-----~gsK~~Hf~~i~~~t-----------g-I~y~eMlFFDDe~~N~~~v~ 141 (169)
T PF12689_consen 82 LLEIDDADGDGVPLIEYFD--Y-LEIY-----PGSKTTHFRRIHRKT-----------G-IPYEEMLFFDDESRNIEVVS 141 (169)
T ss_dssp HTT-C----------CCEC--E-EEES-----SS-HHHHHHHHHHHH---------------GGGEEEEES-HHHHHHHH
T ss_pred hcCCCccccccccchhhcc--h-hhee-----cCchHHHHHHHHHhc-----------C-CChhHEEEecCchhcceeeE
Confidence 86532 000 0000110 0 1111 123334566666531 4 78888999999998865533
Q ss_pred CCce
Q 042807 270 PYTA 273 (343)
Q Consensus 270 ~Ngi 273 (343)
.=|+
T Consensus 142 ~lGV 145 (169)
T PF12689_consen 142 KLGV 145 (169)
T ss_dssp TTT-
T ss_pred ecCc
Confidence 3343
No 18
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=96.68 E-value=0.002 Score=62.80 Aligned_cols=65 Identities=17% Similarity=0.091 Sum_probs=47.6
Q ss_pred CCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHH
Q 042807 124 RKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDF 194 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~ 194 (343)
.+|+||+|||+||+...- .+.+ ..+-...-..|++.++|+.+.+ .+-++|=|+..+..|..+++.
T Consensus 2 ~~k~~v~DlDnTlw~gv~-~e~g-----~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~ 67 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVL-GEDG-----IDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFER 67 (320)
T ss_pred CeEEEEEcCCCCCCCCEE-ccCC-----ccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHh
Confidence 589999999999997531 1111 0000011236789999999986 489999999999999999987
No 19
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=96.57 E-value=0.007 Score=53.70 Aligned_cols=51 Identities=14% Similarity=-0.050 Sum_probs=38.0
Q ss_pred cEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCch
Q 042807 126 KLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQ 185 (343)
Q Consensus 126 klLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~ 185 (343)
+.|.||+||||+-.. .+. .....+..-|++.++|++|.+. |.++|-|+...
T Consensus 2 ~~~~~D~Dgtl~~~~-~~~--------~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 2 KAIFLDRDGTINIDH-GYV--------HEIDNFEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred CEEEEeCCCCEeCCC-CCC--------CCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 689999999999421 111 1112345669999999999965 99999999885
No 20
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=96.55 E-value=0.005 Score=59.68 Aligned_cols=60 Identities=22% Similarity=0.222 Sum_probs=48.7
Q ss_pred CCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcCc-eEEEEcCCchHHHHHHHHHHc
Q 042807 123 LRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFERF-DVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 123 ~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~y-EIvIwTSa~~~ya~~il~~Ld 196 (343)
..+-++|+|||.|||..... ....=|.+-+-|..+.+.+ -+++||.|.+++|..-|+.+.
T Consensus 120 ~~phVIVfDlD~TLItd~~~--------------v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~ 180 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEGD--------------VRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELK 180 (297)
T ss_pred CCCcEEEEECCCcccccCCc--------------cccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhC
Confidence 45669999999999986431 1123378889999999876 788999999999999999875
No 21
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=96.33 E-value=0.011 Score=51.01 Aligned_cols=53 Identities=17% Similarity=0.091 Sum_probs=39.9
Q ss_pred cEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc-CceEEEEcCCch
Q 042807 126 KLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE-RFDVGVWSSRTQ 185 (343)
Q Consensus 126 klLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTSa~~ 185 (343)
++|+||+||||+...+..... ........|++.++|++|.+ .|.++|-|+...
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~-------~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~ 54 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPR-------SLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSG 54 (147)
T ss_pred CeEEEeCCCceeccCCcccCC-------CHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCc
Confidence 578999999999986522110 11234568999999999985 599999999863
No 22
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=95.92 E-value=0.0074 Score=60.93 Aligned_cols=120 Identities=19% Similarity=0.217 Sum_probs=86.5
Q ss_pred CCCCcEEEEeCCCceeeecCCC--CCCC------------CCCce--ecceeEEeCCChHHHHHHHhcCceEEEEcCCch
Q 042807 122 RLRKKLLVLDLNGLLADIVSPP--PKDC------------KADKK--IARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQ 185 (343)
Q Consensus 122 ~~~KklLVLDLDeTLi~~~~~~--~~~~------------~~Df~--~~~~~v~~RP~L~eFL~~l~~~yEIvIwTSa~~ 185 (343)
.+.+..||.|+|.|.+|+.... +++. .-++. ...+++..||.+..|+....+.|++-+++.++.
T Consensus 23 q~~~~~l~~~~~~~~~h~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~~~~~~~~~ 102 (390)
T COG5190 23 QDKKLILVVDLDQTIIHTTVDPNDPNNVNQSLERTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLYELHIYTMGTR 102 (390)
T ss_pred cCcccccccccccceecccccCCCCCchhhhhhccccchhccccccccccceeeecccccchhhhhchhcceeeEeeccc
Confidence 3456679999999999987443 1100 00111 235799999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeecccccccCCCCCCCCCCCCCCCcEEEEECCchhc
Q 042807 186 KNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWEISDPNCPWAKGDYNESNTVLLDDSPYKA 265 (343)
Q Consensus 186 ~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~~~~p~~p~~~G~rdl~ntIlIDDsp~~~ 265 (343)
.|++.+.+.+||.+++.=.-...++ .. +....|-+++++ ..+.+.++++||.+..+
T Consensus 103 ~~~~~~~~i~d~~g~~~~d~~~~~~-----------~~-~~~~~~s~~~l~------------p~~~n~~vi~~d~~~~~ 158 (390)
T COG5190 103 AYAERIAKIIDPTGKLFNDRILSRD-----------ES-GSLSQKSLSRLF------------PKDQNMVVIIDDRGDVW 158 (390)
T ss_pred cchhhhhhccccccccccccccccc-----------cc-ccchhhhhhhcC------------ccccccccccccccccC
Confidence 9999999999986542101111111 11 114678888885 36889999999999888
No 23
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=95.86 E-value=0.026 Score=48.54 Aligned_cols=52 Identities=25% Similarity=0.200 Sum_probs=38.6
Q ss_pred cEEEEeCCCceeeecCCCCCCCCCCceecce-eEEeCCChHHHHHHH-hcCceEEEEcCCchHHHH
Q 042807 126 KLLVLDLNGLLADIVSPPPKDCKADKKIARH-AVFKRPFCHDFLRFC-FERFDVGVWSSRTQKNVE 189 (343)
Q Consensus 126 klLVLDLDeTLi~~~~~~~~~~~~Df~~~~~-~v~~RP~L~eFL~~l-~~~yEIvIwTSa~~~ya~ 189 (343)
|++++||||||+..... .+ .....+...+.|+.+ .+.+.|++.|+.......
T Consensus 2 K~i~~DiDGTL~~~~~~------------~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~ 55 (126)
T TIGR01689 2 KRLVMDLDNTITLTENG------------DYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYE 55 (126)
T ss_pred CEEEEeCCCCcccCCCC------------cccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhh
Confidence 58999999999764210 01 134567778888888 457999999999988877
No 24
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=95.77 E-value=0.045 Score=48.67 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=39.9
Q ss_pred CCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc-CceEEEEcCCch
Q 042807 123 LRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE-RFDVGVWSSRTQ 185 (343)
Q Consensus 123 ~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTSa~~ 185 (343)
...++++||+||||+...+.......+ .. ....-|++.+.|+.|.+ .|.++|-|+...
T Consensus 11 ~~~k~~~~D~Dgtl~~~~~~~~~~~~~----~~-~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~ 69 (166)
T TIGR01664 11 PQSKVAAFDLDGTLITTRSGKVFPTSA----SD-WRFLYPEIPAKLQELDDEGYKIVIFTNQSG 69 (166)
T ss_pred CcCcEEEEeCCCceEecCCCCcccCCh----HH-eEEecCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 356889999999999864321110000 00 12235999999999975 699999999765
No 25
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.42 E-value=0.046 Score=57.42 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=49.3
Q ss_pred CCCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCch------------HH
Q 042807 121 SRLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQ------------KN 187 (343)
Q Consensus 121 ~~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~------------~y 187 (343)
..+..|++.||+||||+...+....+..+ .-..+.-|++.+.|+.|.+. |.|+|+|.... ..
T Consensus 164 ~~~~~Kia~fD~DGTLi~t~sg~~~~~~~-----~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~k 238 (526)
T TIGR01663 164 VKGQEKIAGFDLDGTIIKTKSGKVFPKGP-----DDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAK 238 (526)
T ss_pred cCccCcEEEEECCCCccccCCCccCCCCH-----HHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHH
Confidence 34567999999999999865421111111 11234569999999999975 99999999766 35
Q ss_pred HHHHHHHHc
Q 042807 188 VERVVDFLM 196 (343)
Q Consensus 188 a~~il~~Ld 196 (343)
+..+++.+.
T Consensus 239 i~~iL~~lg 247 (526)
T TIGR01663 239 IEAIVAKLG 247 (526)
T ss_pred HHHHHHHcC
Confidence 666666654
No 26
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=95.26 E-value=0.062 Score=47.60 Aligned_cols=65 Identities=11% Similarity=-0.023 Sum_probs=46.7
Q ss_pred cEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc-CceEEEEcCC---------------chHHHH
Q 042807 126 KLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE-RFDVGVWSSR---------------TQKNVE 189 (343)
Q Consensus 126 klLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTSa---------------~~~ya~ 189 (343)
+.|.||.||||++..+... +......+..=|++.++|++|.+ .|.++|-|+. ...++.
T Consensus 2 ~~~~~d~dg~l~~~~~~~~------~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~ 75 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDF------QVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLML 75 (161)
T ss_pred CEEEEeCCCCccccCCCcc------ccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHH
Confidence 6799999999999543110 01112256778999999999997 5999999996 355667
Q ss_pred HHHHHHc
Q 042807 190 RVVDFLM 196 (343)
Q Consensus 190 ~il~~Ld 196 (343)
.+++.+.
T Consensus 76 ~~l~~~g 82 (161)
T TIGR01261 76 QIFRSQG 82 (161)
T ss_pred HHHHHCC
Confidence 7776654
No 27
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=95.19 E-value=0.034 Score=52.56 Aligned_cols=72 Identities=10% Similarity=0.002 Sum_probs=48.1
Q ss_pred CcEEEEeCCCceeeecCCCCCCC---CC---Cc------e---ecceeEEeCCC--hHHHHHHHhcC-ceEEEEcCC---
Q 042807 125 KKLLVLDLNGLLADIVSPPPKDC---KA---DK------K---IARHAVFKRPF--CHDFLRFCFER-FDVGVWSSR--- 183 (343)
Q Consensus 125 KklLVLDLDeTLi~~~~~~~~~~---~~---Df------~---~~~~~v~~RP~--L~eFL~~l~~~-yEIvIwTSa--- 183 (343)
+..++|||||||+++......+. .+ ++ . .....-...|+ ..+||+++.+. +.++|=|+.
T Consensus 63 p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~ 142 (237)
T TIGR01672 63 PIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPG 142 (237)
T ss_pred CeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 44999999999999864100110 11 11 0 01112333566 99999999875 899999998
Q ss_pred -chHHHHHHHHHHc
Q 042807 184 -TQKNVERVVDFLM 196 (343)
Q Consensus 184 -~~~ya~~il~~Ld 196 (343)
...+++.+++.+.
T Consensus 143 k~~~~a~~ll~~lG 156 (237)
T TIGR01672 143 KTDTVSKTLAKNFH 156 (237)
T ss_pred cCHHHHHHHHHHhC
Confidence 6678889888764
No 28
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=94.96 E-value=0.052 Score=48.06 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=35.6
Q ss_pred cEEEEeCCCceeeecCCCCCCC-CCCceecceeEEeCCChHHHHHHHhc-CceEEEEcC
Q 042807 126 KLLVLDLNGLLADIVSPPPKDC-KADKKIARHAVFKRPFCHDFLRFCFE-RFDVGVWSS 182 (343)
Q Consensus 126 klLVLDLDeTLi~~~~~~~~~~-~~Df~~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTS 182 (343)
|++.+||||||+...+...-+. ..| ..+.-|++.+-|+.+.+ .|.|||+|-
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D------~~~~~~~v~~~L~~l~~~Gy~IvIvTN 53 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDD------WKFFPPGVPEALRELHKKGYKIVIVTN 53 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCG------GEEC-TTHHHHHHHHHHTTEEEEEEEE
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHH------hhhcchhHHHHHHHHHhcCCeEEEEeC
Confidence 5789999999999865322111 122 46778899999999997 599999984
No 29
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=94.90 E-value=0.011 Score=52.77 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=35.4
Q ss_pred eEEeCCChHHHHHHHhcCceEEEEcCCchHHHHHHHHHHc
Q 042807 157 AVFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 157 ~v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il~~Ld 196 (343)
.+..+||+.+||+.+.+.+.++|-|++...+++.+++.+.
T Consensus 66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~g 105 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLG 105 (205)
T ss_pred hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcC
Confidence 3445899999999999889999999999999999999864
No 30
>PLN02954 phosphoserine phosphatase
Probab=94.39 E-value=0.03 Score=50.85 Aligned_cols=39 Identities=18% Similarity=0.062 Sum_probs=34.5
Q ss_pred EEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 158 VFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
...+|++.++|+.+.+. +.++|=|++...+++.+++.+.
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~g 122 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILG 122 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhC
Confidence 44689999999999764 8999999999999999999863
No 31
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=94.39 E-value=0.063 Score=51.68 Aligned_cols=74 Identities=18% Similarity=0.122 Sum_probs=49.5
Q ss_pred CCCcEEEEeCCCceeeecCC----CCCCCCC---Cce--ecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHH
Q 042807 123 LRKKLLVLDLNGLLADIVSP----PPKDCKA---DKK--IARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVV 192 (343)
Q Consensus 123 ~~KklLVLDLDeTLi~~~~~----~~~~~~~---Df~--~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il 192 (343)
.+++.+|||||||+++.... ..++... ++. +.......-|+..+||+++.+. ..++|-|.....+.+..+
T Consensus 73 ~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~ 152 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATL 152 (266)
T ss_pred CCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHH
Confidence 45789999999999986521 0111111 110 1223444679999999999765 889999999877777666
Q ss_pred HHHc
Q 042807 193 DFLM 196 (343)
Q Consensus 193 ~~Ld 196 (343)
+.|.
T Consensus 153 ~~Lk 156 (266)
T TIGR01533 153 KNLK 156 (266)
T ss_pred HHHH
Confidence 5553
No 32
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.009 Score=61.12 Aligned_cols=73 Identities=5% Similarity=-0.109 Sum_probs=60.7
Q ss_pred hhhhccccCCCC-CCCCCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcCceEEEEcCCch
Q 042807 107 LSRISLSSQFSA-PISRLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQ 185 (343)
Q Consensus 107 ~~~~~~~~~i~~-~~~~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~yEIvIwTSa~~ 185 (343)
.++.++.++..+ .++...++.+++|.|+|+.++. ...+.+||++++|++. .-+..+||+++.+
T Consensus 117 mnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~--------------~i~~~mR~~f~~~~~~--~~v~pi~llqtl~ 180 (473)
T KOG1872|consen 117 MNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRR--------------RISIETRTCFRPLCEK--GAVAPINLLQTLS 180 (473)
T ss_pred hhhhhhhhhcCccCcchhhccchhccCCchhhhhh--------------hHHHHHHHHHHhhhcc--CCcchHHHHHHHH
Confidence 677777666655 5677889999999999999853 2367899999999999 9999999999999
Q ss_pred HHHHHHHHHH
Q 042807 186 KNVERVVDFL 195 (343)
Q Consensus 186 ~ya~~il~~L 195 (343)
++....++.+
T Consensus 181 ~~~Pqfa~~~ 190 (473)
T KOG1872|consen 181 SQYPQFAEWV 190 (473)
T ss_pred HHhHHHHHHh
Confidence 9888877754
No 33
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=93.27 E-value=0.26 Score=42.95 Aligned_cols=64 Identities=25% Similarity=0.260 Sum_probs=44.4
Q ss_pred cEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHc
Q 042807 126 KLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 126 klLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ld 196 (343)
++++||+||||+...-... .+-+ ....++.+|+. -|++|.+ .+.++|-|+.....+..+++.+.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~----~~~~-~~~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~g 66 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYYT----NNGE-EIKAFNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLG 66 (154)
T ss_pred eEEEEeCceeEEcCeEEEC----CCCc-EEEEEechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcC
Confidence 5789999999997421000 0000 11234667765 6888876 59999999999999999888764
No 34
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=93.21 E-value=0.086 Score=48.86 Aligned_cols=40 Identities=15% Similarity=-0.037 Sum_probs=37.0
Q ss_pred EEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHcC
Q 042807 158 VFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLMG 197 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ldp 197 (343)
...+|+..+.++.+.+. +.++|-|++-..+++++.+.+--
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~ 116 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGI 116 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCC
Confidence 78899999999999986 99999999999999999998743
No 35
>PRK06769 hypothetical protein; Validated
Probab=93.13 E-value=0.21 Score=44.44 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=37.0
Q ss_pred CcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc-CceEEEEcCCch
Q 042807 125 KKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE-RFDVGVWSSRTQ 185 (343)
Q Consensus 125 KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTSa~~ 185 (343)
=+.|.||+||||.-... . ...-.+..-|++.++|++|.+ .|.++|-|+...
T Consensus 4 ~~~~~~d~d~~~~~~~~-~---------~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 4 IQAIFIDRDGTIGGDTT-I---------HYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPG 55 (173)
T ss_pred CcEEEEeCCCcccCCCC-C---------CCHHHeEECCCHHHHHHHHHHCCCEEEEEECCch
Confidence 36799999999954321 0 011134567999999999986 599999998764
No 36
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=93.06 E-value=0.18 Score=44.72 Aligned_cols=57 Identities=18% Similarity=0.070 Sum_probs=44.7
Q ss_pred CCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCc-hHHHHHHHHHH
Q 042807 123 LRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRT-QKNVERVVDFL 195 (343)
Q Consensus 123 ~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~-~~ya~~il~~L 195 (343)
.+-+.+|+|+||||..... ...-|++.++|+.|.+. +.++|-|++. ...+..+++.+
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~----------------~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~ 81 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH----------------NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKAL 81 (170)
T ss_pred CCCCEEEEecCCccccCCC----------------CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHc
Confidence 3568999999999997532 23458999999999875 9999999998 56666666544
No 37
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=92.87 E-value=0.18 Score=47.99 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=39.2
Q ss_pred CCCCCCCCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc--CceEEEEcCCchHHHHHHHH
Q 042807 116 FSAPISRLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE--RFDVGVWSSRTQKNVERVVD 193 (343)
Q Consensus 116 i~~~~~~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~--~yEIvIwTSa~~~ya~~il~ 193 (343)
+...|....+.+|++|+||||+.....+.. ...-|.+.+-|+.|.+ ...++|=|..+..-+..+++
T Consensus 5 ~~~~~~~~~~~li~~D~DGTLl~~~~~p~~------------~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~ 72 (266)
T PRK10187 5 LTVPPELSANYAWFFDLDGTLAEIKPHPDQ------------VVVPDNILQGLQLLATANDGALALISGRSMVELDALAK 72 (266)
T ss_pred CCCCCCCCCCEEEEEecCCCCCCCCCCccc------------ccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcC
Confidence 333444455789999999999985432221 1223555666666664 35566666666665555543
No 38
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=92.86 E-value=0.14 Score=48.39 Aligned_cols=55 Identities=27% Similarity=0.228 Sum_probs=44.4
Q ss_pred CcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 125 KKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 125 KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
.+++++||||||+.... ...|...+.|+.+.+. +.++|=|......+..+++.+.
T Consensus 4 ~kli~~DlDGTLl~~~~-----------------~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~ 59 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT-----------------YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELG 59 (273)
T ss_pred ceEEEEcCcccCcCCCC-----------------cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcC
Confidence 57999999999998521 1235677889998875 8999999998999999998875
No 39
>COG4996 Predicted phosphatase [General function prediction only]
Probab=92.61 E-value=0.43 Score=41.81 Aligned_cols=73 Identities=14% Similarity=0.074 Sum_probs=52.3
Q ss_pred EEEEeCCCceeeecC--CCCCCC---CCCce--ecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHcCC
Q 042807 127 LLVLDLNGLLADIVS--PPPKDC---KADKK--IARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLMGD 198 (343)
Q Consensus 127 lLVLDLDeTLi~~~~--~~~~~~---~~Df~--~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ldp~ 198 (343)
++|||+|+||.++.. ..+.|. ++... ..+..+..+|++.+||+.+... |=+..+|=.-+.-|-+.+.+++-.
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~ 81 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLL 81 (164)
T ss_pred cEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchh
Confidence 689999999999742 111110 00000 2467899999999999999975 777788888888888888888754
Q ss_pred C
Q 042807 199 M 199 (343)
Q Consensus 199 ~ 199 (343)
+
T Consensus 82 ~ 82 (164)
T COG4996 82 Q 82 (164)
T ss_pred h
Confidence 3
No 40
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=92.40 E-value=0.25 Score=46.14 Aligned_cols=58 Identities=26% Similarity=0.204 Sum_probs=47.5
Q ss_pred CCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHh-cCceEEEEcCCchHHHHHHHHHHcCC
Q 042807 124 RKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCF-ERFDVGVWSSRTQKNVERVVDFLMGD 198 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~-~~yEIvIwTSa~~~ya~~il~~Ldp~ 198 (343)
..++|++||||||+.... ...|...+-|+.+. +.+.++|=|......+..+++.|.-.
T Consensus 2 ~~kli~~DlDGTLl~~~~-----------------~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~ 60 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNK-----------------TISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLD 60 (264)
T ss_pred CeeEEEEcCCCCccCCCC-----------------ccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCC
Confidence 368999999999999753 26778888888774 56999999999999999999987643
No 41
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=92.39 E-value=0.36 Score=46.00 Aligned_cols=130 Identities=12% Similarity=0.025 Sum_probs=79.8
Q ss_pred CCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHcCCCC
Q 042807 122 RLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLMGDMK 200 (343)
Q Consensus 122 ~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ldp~~~ 200 (343)
..+++.+++|+||||.......+ .|+. ........|+..++|+.+.+. +.++|-|+.....++.+++.+.....
T Consensus 155 ~~~~~~~~~D~dgtl~~~~~~~~----~~~~-~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~ 229 (300)
T PHA02530 155 PGLPKAVIFDIDGTLAKMGGRSP----YDWT-KVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDI 229 (300)
T ss_pred CCCCCEEEEECCCcCcCCCCCCc----cchh-hcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCC
Confidence 34568999999999998653211 0111 111335689999999999875 99999999999999999998865431
Q ss_pred ceEEEEEecCceee-cccccccccccc---ceeeecccccccCCCCCCCCCCCC-CCCcEEEEECCchhcccCCCCce
Q 042807 201 HKLLFCWDLSYCTA-TSFKALENKYKA---LVFKELRKVWEISDPNCPWAKGDY-NESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 201 ~~i~~vl~Rd~C~~-~~~~~~e~~~k~---~~vKDL~~Lw~~~~p~~p~~~G~r-dl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
.+..+...+.+.. ... ....++ ...+-|..+ + . +.+.+++|||++.-...--.+|+
T Consensus 230 -~f~~i~~~~~~~~~~~~---~~~~kp~p~~~~~~l~~~------------~-~~~~~~~~~vgD~~~d~~~a~~~Gi 290 (300)
T PHA02530 230 -WFDDLIGRPPDMHFQRE---QGDKRPDDVVKEEIFWEK------------I-APKYDVLLAVDDRDQVVDMWRRIGL 290 (300)
T ss_pred -chhhhhCCcchhhhccc---CCCCCCcHHHHHHHHHHH------------h-ccCceEEEEEcCcHHHHHHHHHhCC
Confidence 1222222221100 000 000010 111222222 3 4 56899999999988877667775
No 42
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=92.32 E-value=0.27 Score=46.44 Aligned_cols=58 Identities=22% Similarity=0.163 Sum_probs=43.6
Q ss_pred CCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 122 RLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 122 ~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
.+.++++++||||||++... ..-|-..+-|+.+.+. ..++|=|......+..+++.+.
T Consensus 4 ~~~~~lI~~DlDGTLL~~~~-----------------~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~ 62 (271)
T PRK03669 4 LQDPLLIFTDLDGTLLDSHT-----------------YDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLG 62 (271)
T ss_pred cCCCeEEEEeCccCCcCCCC-----------------cCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhC
Confidence 45689999999999998522 1112345667777754 8899999999999999998874
No 43
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=91.66 E-value=0.27 Score=44.65 Aligned_cols=53 Identities=28% Similarity=0.236 Sum_probs=41.5
Q ss_pred EEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 127 LLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 127 lLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
++++||||||+.... .. .-+ ..+.|+.+.+. ..++|-|......+..+++.+.
T Consensus 1 ~i~~DlDGTLL~~~~---------------~~-~~~-~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~ 54 (221)
T TIGR02463 1 WVFSDLDGTLLDSHS---------------YD-WQP-AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALG 54 (221)
T ss_pred CEEEeCCCCCcCCCC---------------CC-cHH-HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC
Confidence 489999999998532 11 112 56888888764 8999999999999999999875
No 44
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=91.59 E-value=0.24 Score=44.42 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=41.1
Q ss_pred EEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHh-cCceEEEEcCCchHHHHHHHHHHc
Q 042807 128 LVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCF-ERFDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 128 LVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~-~~yEIvIwTSa~~~ya~~il~~Ld 196 (343)
|++||||||++.... .-|...+.|+.+. +.+.++|-|......+..++..+.
T Consensus 1 i~~DlDGTLl~~~~~-----------------i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 53 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK-----------------ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELG 53 (254)
T ss_dssp EEEECCTTTCSTTSS-----------------SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTT
T ss_pred cEEEECCceecCCCe-----------------eCHHHHHHHHhhcccceEEEEEccCccccccccccccc
Confidence 689999999995421 3356677788777 579999999999999999998653
No 45
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=91.48 E-value=0.29 Score=41.26 Aligned_cols=90 Identities=16% Similarity=0.109 Sum_probs=60.0
Q ss_pred eeEEeCCChHHHHHHHh-cCceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeeccc
Q 042807 156 HAVFKRPFCHDFLRFCF-ERFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRK 234 (343)
Q Consensus 156 ~~v~~RP~L~eFL~~l~-~~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~ 234 (343)
......|++.++|+.+. ..+.++|.|.+...++..+++.+.-.. .+..++..+.+.... .....+.+=++.
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~--~f~~i~~~~~~~~~K------p~~~~~~~~~~~ 145 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDD--YFDEIISSDDVGSRK------PDPDAYRRALEK 145 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGG--GCSEEEEGGGSSSST------TSHHHHHHHHHH
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCccccccccccccccc--ccccccccchhhhhh------hHHHHHHHHHHH
Confidence 57889999999999999 789999999999999999999863221 123344444332110 000012222223
Q ss_pred ccccCCCCCCCCCCCCCCCcEEEEECCchhcc
Q 042807 235 VWEISDPNCPWAKGDYNESNTVLLDDSPYKAL 266 (343)
Q Consensus 235 Lw~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~ 266 (343)
+ | .+.+++|+|||++....
T Consensus 146 ~------------~-~~p~~~~~vgD~~~d~~ 164 (176)
T PF13419_consen 146 L------------G-IPPEEILFVGDSPSDVE 164 (176)
T ss_dssp H------------T-SSGGGEEEEESSHHHHH
T ss_pred c------------C-CCcceEEEEeCCHHHHH
Confidence 3 3 68899999999996543
No 46
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=91.46 E-value=0.33 Score=42.83 Aligned_cols=62 Identities=10% Similarity=0.156 Sum_probs=40.0
Q ss_pred EEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHH---HHHHH
Q 042807 127 LLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVE---RVVDF 194 (343)
Q Consensus 127 lLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~---~il~~ 194 (343)
++++|+||||+.+..... ..+. .+. -+..|+..++++.+.+. |.+++-|+.....+. ..++.
T Consensus 1 iVisDIDGTL~~sd~~~~---~~~~-~~~--~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~ 66 (157)
T smart00775 1 IVISDIDGTITKSDVLGH---VVPI-IGK--DWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQ 66 (157)
T ss_pred CEEEecCCCCcccccccc---cccc-ccc--CcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHH
Confidence 478999999998641100 0000 000 14579999999999975 777777777766664 45555
No 47
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=91.41 E-value=0.4 Score=39.13 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=38.3
Q ss_pred EEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHH
Q 042807 128 LVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFL 195 (343)
Q Consensus 128 LVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~L 195 (343)
+++||||||.+.. ..=|+..+||+.+.+. ..+++.|-++..-.+.+++.+
T Consensus 1 ~l~D~dGvl~~g~------------------~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 1 FLFDLDGVLYNGN------------------EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp EEEESTTTSEETT------------------EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CEEeCccEeEeCC------------------CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 5899999999842 2248999999999985 999999999866666666655
No 48
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=91.40 E-value=0.32 Score=44.08 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=43.3
Q ss_pred cEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHcCC
Q 042807 126 KLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLMGD 198 (343)
Q Consensus 126 klLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ldp~ 198 (343)
+++++||||||+.... ..-|...+-|+.+.+. ..++|=|......+..+.+.+..+
T Consensus 2 k~v~~DlDGTLl~~~~-----------------~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNR-----------------MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred cEEEEecCCCcCCCCc-----------------ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC
Confidence 6899999999997421 2345566777777765 889999999999999998887543
No 49
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=91.40 E-value=0.27 Score=43.93 Aligned_cols=53 Identities=25% Similarity=0.253 Sum_probs=42.6
Q ss_pred EEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHH
Q 042807 127 LLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFL 195 (343)
Q Consensus 127 lLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~L 195 (343)
+|++|+||||+.... ....|.+.+.|+.+.+. ..++|=|.....++..+++.+
T Consensus 1 li~~D~DgTL~~~~~----------------~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 1 LLFFDLDGTLLDPNA----------------HELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred CEEEeCcCCCcCCCC----------------CcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 589999999997421 12347788888888876 889999999999999998873
No 50
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=91.19 E-value=0.16 Score=50.04 Aligned_cols=78 Identities=15% Similarity=0.040 Sum_probs=55.1
Q ss_pred CCCCCCCcEEEEeCCCceeeecCC------CCC------------CCCCCcee-------------------cceeEEeC
Q 042807 119 PISRLRKKLLVLDLNGLLADIVSP------PPK------------DCKADKKI-------------------ARHAVFKR 161 (343)
Q Consensus 119 ~~~~~~KklLVLDLDeTLi~~~~~------~~~------------~~~~Df~~-------------------~~~~v~~R 161 (343)
.+.+..++++|+||||||+....- ... ....||.. ....+-.+
T Consensus 104 ~~~~~~~~LvvfDmDGTLI~~e~i~eia~~~g~~~~v~~it~~~m~Geldf~esl~~rv~~l~g~~~~il~~v~~~l~l~ 183 (322)
T PRK11133 104 IPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEEVAEVTERAMRGELDFEASLRQRVATLKGADANILQQVRENLPLM 183 (322)
T ss_pred cccccCCCEEEEECCCCCcchHHHHHHHHHhCCchHHHHHHHHHHcCCcCHHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 455677899999999999975310 000 01122210 01235579
Q ss_pred CChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 162 PFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 162 P~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
|++.++|+.|.+. +.++|-|++...+++.+.+.+.
T Consensus 184 pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lg 219 (322)
T PRK11133 184 PGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLR 219 (322)
T ss_pred hhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcC
Confidence 9999999999975 9999999999999999888753
No 51
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=91.07 E-value=0.61 Score=46.74 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=41.0
Q ss_pred CCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc-CceEEEEcCC
Q 042807 124 RKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE-RFDVGVWSSR 183 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTSa 183 (343)
.+++|+||-||||+....... . ......+...|++.++|++|.+ .|.++|-|+.
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y---~---~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq 55 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDF---Q---VDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQ 55 (354)
T ss_pred CCcEEEEeCCCCccCCCCccc---c---ccCcccceECcCHHHHHHHHHhCCCeEEEEECC
Confidence 478999999999999743110 0 0112357889999999999986 5999999994
No 52
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=91.03 E-value=0.37 Score=44.72 Aligned_cols=52 Identities=21% Similarity=0.119 Sum_probs=41.1
Q ss_pred EEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 127 LLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 127 lLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
++++||||||++... .-|...++|+.+.+. ..+++-|+.+...+..+++.+.
T Consensus 1 li~~DlDGTLl~~~~------------------~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg 53 (225)
T TIGR02461 1 VIFTDLDGTLLPPGY------------------EPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELG 53 (225)
T ss_pred CEEEeCCCCCcCCCC------------------CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcC
Confidence 478999999999421 124578999999875 8899999998898888888764
No 53
>PRK08238 hypothetical protein; Validated
Probab=91.03 E-value=0.25 Score=51.30 Aligned_cols=38 Identities=13% Similarity=-0.000 Sum_probs=33.8
Q ss_pred EeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHc
Q 042807 159 FKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 159 ~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ld 196 (343)
-.+|++.++|+.+.+ .+.++|=|++.+.+++++++++.
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lG 110 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLG 110 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcC
Confidence 368999999999976 59999999999999999999863
No 54
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.78 E-value=0.23 Score=51.62 Aligned_cols=125 Identities=20% Similarity=0.133 Sum_probs=64.3
Q ss_pred CCCCCcEEEEeCCCceeeecCCCCCCCCCCc-eecceeEEeCCChHHHHHHHhcCc----eEEEEcCCchHHHHHHHHHH
Q 042807 121 SRLRKKLLVLDLNGLLADIVSPPPKDCKADK-KIARHAVFKRPFCHDFLRFCFERF----DVGVWSSRTQKNVERVVDFL 195 (343)
Q Consensus 121 ~~~~KklLVLDLDeTLi~~~~~~~~~~~~Df-~~~~~~v~~RP~L~eFL~~l~~~y----EIvIwTSa~~~ya~~il~~L 195 (343)
..+.++.||||||+||.--.- .+.| -|. +.+ ...-=|-.-+|-+++...+ =++|=|--..+.| +.+
T Consensus 218 ~g~~kK~LVLDLDNTLWGGVI-GedG--v~GI~Ls--~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da----~ev 288 (574)
T COG3882 218 SGKSKKALVLDLDNTLWGGVI-GEDG--VDGIRLS--NSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEKDA----KEV 288 (574)
T ss_pred hCcccceEEEecCCccccccc-cccc--ccceeec--CCCCchhHHHHHHHHHHHHhccEEEEEecCCchhhH----HHH
Confidence 566899999999999997531 1111 000 000 0011122345555555444 4455444444444 444
Q ss_pred cCCCCceEEEEEecCceeeccccccccccccceeeecccccccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCc
Q 042807 196 MGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYT 272 (343)
Q Consensus 196 dp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ng 272 (343)
+..+.+- .-.+..-.|.... +..| .-+++++-+++ +-.++-.|.|||+|.....--.++
T Consensus 289 F~khp~M-iLkeedfa~~~iN-----W~~K---~eNirkIAkkl---------Nlg~dSmvFiDD~p~ErE~vk~~~ 347 (574)
T COG3882 289 FRKHPDM-ILKEEDFAVFQIN-----WDPK---AENIRKIAKKL---------NLGLDSMVFIDDNPAERELVKREL 347 (574)
T ss_pred HhhCCCe-EeeHhhhhhheec-----CCcc---hhhHHHHHHHh---------CCCccceEEecCCHHHHHHHHhcC
Confidence 4322222 2223333343322 1222 35666676665 478999999999998765544443
No 55
>PTZ00445 p36-lilke protein; Provisional
Probab=90.50 E-value=0.27 Score=46.09 Aligned_cols=135 Identities=12% Similarity=0.022 Sum_probs=74.4
Q ss_pred CCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc-CceEEEEcCCchHH-----------HHH
Q 042807 123 LRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE-RFDVGVWSSRTQKN-----------VER 190 (343)
Q Consensus 123 ~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~y-----------a~~ 190 (343)
.+=+++++|+|.|||...+..-. .++.......-..||.+..+++.|.+ .+.|+|=|=+.+.- .+.
T Consensus 41 ~GIk~Va~D~DnTlI~~HsgG~~--~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~ 118 (219)
T PTZ00445 41 CGIKVIASDFDLTMITKHSGGYI--DPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDR 118 (219)
T ss_pred cCCeEEEecchhhhhhhhccccc--CCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHH
Confidence 35688999999999984432110 01100112345679999999999986 68888877776644 355
Q ss_pred HHHHHcCC--CCceEEEEEecCceeeccc--cccccccccceeee------c--ccccccCCCCCCCCCCCCCCCcEEEE
Q 042807 191 VVDFLMGD--MKHKLLFCWDLSYCTATSF--KALENKYKALVFKE------L--RKVWEISDPNCPWAKGDYNESNTVLL 258 (343)
Q Consensus 191 il~~Ldp~--~~~~i~~vl~Rd~C~~~~~--~~~e~~~k~~~vKD------L--~~Lw~~~~p~~p~~~G~rdl~ntIlI 258 (343)
++++...+ ....+..+ .|-+.+. +..+|.. ....|+ - ..+.+++ | .+.+.++.|
T Consensus 119 li~~~lk~s~~~~~i~~~----~~yyp~~w~~p~~y~~-~gl~KPdp~iK~yHle~ll~~~--------g-l~peE~LFI 184 (219)
T PTZ00445 119 MVEAALKKSKCDFKIKKV----YAYYPKFWQEPSDYRP-LGLDAPMPLDKSYHLKQVCSDF--------N-VNPDEILFI 184 (219)
T ss_pred HHHHHHHhcCccceeeee----eeeCCcccCChhhhhh-hcccCCCccchHHHHHHHHHHc--------C-CCHHHeEee
Confidence 66654322 11222222 1111110 0000100 012232 2 3344443 3 789999999
Q ss_pred ECCchhcccCCCCce
Q 042807 259 DDSPYKALLNPPYTA 273 (343)
Q Consensus 259 DDsp~~~~~qP~Ngi 273 (343)
||++.++..--.-|+
T Consensus 185 DD~~~NVeaA~~lGi 199 (219)
T PTZ00445 185 DDDMNNCKNALKEGY 199 (219)
T ss_pred cCCHHHHHHHHHCCC
Confidence 999998876555554
No 56
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=90.40 E-value=0.37 Score=45.65 Aligned_cols=72 Identities=11% Similarity=0.042 Sum_probs=45.3
Q ss_pred CCcEEEEeCCCceeeecCC--CCC----CCCCCc------e---ecceeEEeCCC--hHHHHHHHh-cCceEEEEcCCc-
Q 042807 124 RKKLLVLDLNGLLADIVSP--PPK----DCKADK------K---IARHAVFKRPF--CHDFLRFCF-ERFDVGVWSSRT- 184 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~~~--~~~----~~~~Df------~---~~~~~v~~RP~--L~eFL~~l~-~~yEIvIwTSa~- 184 (343)
++..+|+|+|||+++++.. ..+ +...+| . .......-+|+ ..+||+.+. +.+.|++=|+..
T Consensus 62 ~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~ 141 (237)
T PRK11009 62 PPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTA 141 (237)
T ss_pred CCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4559999999999986421 111 001112 1 11123345566 999999995 569999999854
Q ss_pred ---hHHHHHHHHHH
Q 042807 185 ---QKNVERVVDFL 195 (343)
Q Consensus 185 ---~~ya~~il~~L 195 (343)
..+++.+++.+
T Consensus 142 ~k~~~t~~~Llk~~ 155 (237)
T PRK11009 142 TKTETVSKTLADDF 155 (237)
T ss_pred cccHHHHHHHHHHc
Confidence 55777777744
No 57
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=90.37 E-value=0.48 Score=46.49 Aligned_cols=55 Identities=22% Similarity=0.274 Sum_probs=41.6
Q ss_pred CcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 125 KKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 125 KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
++++++||||||+++.. +++ +-..+-|+.+.+. ..||+-|+-+..-+..+++.+.
T Consensus 1 ~KLIftDLDGTLLd~~~---------------~~~--~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lg 56 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEF---------------NSY--GAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLR 56 (302)
T ss_pred CcEEEEeCCCCCcCCCC---------------cCC--HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 47899999999999642 222 2356677788765 8888888888888888888775
No 58
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=90.22 E-value=0.5 Score=42.92 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=40.5
Q ss_pred CcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 125 KKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 125 KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
.+++++||||||+.... ...|...+-|+.+.+. ..++|=|......+..+++.+.
T Consensus 3 ~kli~~DlDGTLl~~~~-----------------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~ 58 (230)
T PRK01158 3 IKAIAIDIDGTITDKDR-----------------RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIG 58 (230)
T ss_pred eeEEEEecCCCcCCCCC-----------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhC
Confidence 37999999999997532 2345566677777754 7788888888888888887764
No 59
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=89.79 E-value=0.61 Score=43.56 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=39.9
Q ss_pred CcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 125 KKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 125 KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
.+++++||||||+.... ..-|...+-|+.+.+. ..++|=|......+..+++.+.
T Consensus 3 ~kli~~DlDGTLl~~~~-----------------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~ 58 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH-----------------TISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELH 58 (270)
T ss_pred eEEEEEecCCcCcCCCC-----------------ccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhC
Confidence 47999999999998532 1223345677777765 7788878877777888887764
No 60
>PLN02645 phosphoglycolate phosphatase
Probab=89.56 E-value=0.63 Score=45.28 Aligned_cols=53 Identities=8% Similarity=0.022 Sum_probs=40.9
Q ss_pred CcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHH
Q 042807 125 KKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFL 195 (343)
Q Consensus 125 KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~L 195 (343)
-+++++|+||||+... .++ |+..++|+.+.+ ...+++-|..+.+....+++.+
T Consensus 28 ~~~~~~D~DGtl~~~~----------------~~~--~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l 81 (311)
T PLN02645 28 VETFIFDCDGVIWKGD----------------KLI--EGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF 81 (311)
T ss_pred CCEEEEeCcCCeEeCC----------------ccC--cCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 4689999999998852 122 889999999985 5889999988866666666544
No 61
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=89.47 E-value=0.75 Score=41.39 Aligned_cols=84 Identities=13% Similarity=0.064 Sum_probs=54.9
Q ss_pred EEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeecccccccccccc-ceeeecccc
Q 042807 158 VFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKA-LVFKELRKV 235 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~-~~vKDL~~L 235 (343)
+...|++.+||++|.+. +.++|-|++...++...++.+.-.. .+.+++..+..... +..+ .+.+=++.+
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~--~f~~i~~~~~~~~~-------KP~~~~~~~~~~~~ 163 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD--FFDAVITSEEEGVE-------KPHPKIFYAALKRL 163 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH--hccEEEEeccCCCC-------CCCHHHHHHHHHHc
Confidence 46789999999999876 9999999999999999888764221 23334333322100 0000 122223333
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEECCch
Q 042807 236 WEISDPNCPWAKGDYNESNTVLLDDSPY 263 (343)
Q Consensus 236 w~~~~p~~p~~~G~rdl~ntIlIDDsp~ 263 (343)
| .+.+++|+|.|++.
T Consensus 164 ------------~-~~~~~~~~igDs~~ 178 (221)
T TIGR02253 164 ------------G-VKPEEAVMVGDRLD 178 (221)
T ss_pred ------------C-CChhhEEEECCChH
Confidence 3 78899999999984
No 62
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=89.18 E-value=0.65 Score=44.83 Aligned_cols=61 Identities=30% Similarity=0.372 Sum_probs=50.3
Q ss_pred CCCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcCce--EEEEcCCchHHHHHHHH
Q 042807 121 SRLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFERFD--VGVWSSRTQKNVERVVD 193 (343)
Q Consensus 121 ~~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~yE--IvIwTSa~~~ya~~il~ 193 (343)
...++.+++||.||||......+. ....=+.+-+.|+.|...+. ++|.|..+..-.+..+.
T Consensus 14 ~~a~~~~~~lDyDGTl~~i~~~p~------------~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 14 LNARKRLLFLDYDGTLTEIVPHPE------------AAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFG 76 (266)
T ss_pred ccccceEEEEeccccccccccCcc------------ccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcC
Confidence 456789999999999999864332 35556789999999999999 88999999988888776
No 63
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=88.99 E-value=0.57 Score=43.56 Aligned_cols=53 Identities=25% Similarity=0.268 Sum_probs=36.6
Q ss_pred EEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 127 LLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 127 lLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
++++||||||+.... ..-|...+.|+.+.+. +.++|=|..+...+..+++.+.
T Consensus 1 li~~DlDGTLl~~~~-----------------~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~ 54 (256)
T TIGR00099 1 LIFIDLDGTLLNDDH-----------------TISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELG 54 (256)
T ss_pred CEEEeCCCCCCCCCC-----------------ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcC
Confidence 579999999998532 1234455666666654 7777777777777777776653
No 64
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=88.98 E-value=0.55 Score=43.84 Aligned_cols=53 Identities=25% Similarity=0.139 Sum_probs=41.6
Q ss_pred EEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 127 LLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 127 lLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
++++||||||++... . .-+...++++.+.+. ..++|=|..+...+..+++.+.
T Consensus 1 li~~DlDGTll~~~~---------------~--~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~ 54 (256)
T TIGR01486 1 WIFTDLDGTLLDPHG---------------Y--DWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELG 54 (256)
T ss_pred CEEEcCCCCCcCCCC---------------c--CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC
Confidence 579999999998632 0 112368899998875 8888889999999999998874
No 65
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=88.58 E-value=0.73 Score=42.85 Aligned_cols=54 Identities=19% Similarity=0.105 Sum_probs=42.4
Q ss_pred CcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc-CceEEEEcCCchHHHH--HHHHHHc
Q 042807 125 KKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVE--RVVDFLM 196 (343)
Q Consensus 125 KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~--~il~~Ld 196 (343)
-.++++|+||||.+.. ..-|+..++|+.+.+ .+.++|-|++.+..++ ..++.+.
T Consensus 8 ~~~~~~D~dG~l~~~~------------------~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~g 64 (242)
T TIGR01459 8 YDVFLLDLWGVIIDGN------------------HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLG 64 (242)
T ss_pred CCEEEEecccccccCC------------------ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCC
Confidence 4588999999998752 235999999999986 5999999998877665 5555543
No 66
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=88.55 E-value=1.1 Score=41.79 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.9
Q ss_pred CcEEEEeCCCceeeec
Q 042807 125 KKLLVLDLNGLLADIV 140 (343)
Q Consensus 125 KklLVLDLDeTLi~~~ 140 (343)
.+++++||||||+...
T Consensus 3 ~kli~~DlDGTLl~~~ 18 (272)
T PRK10530 3 YRVIALDLDGTLLTPK 18 (272)
T ss_pred ccEEEEeCCCceECCC
Confidence 4799999999999764
No 67
>PRK10444 UMP phosphatase; Provisional
Probab=87.86 E-value=1.2 Score=42.19 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=42.7
Q ss_pred cEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHc
Q 042807 126 KLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 126 klLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ld 196 (343)
+++++||||||+... ..=|+..+||+.+.+ ...+++-|..+..-...+++.+.
T Consensus 2 ~~v~~DlDGtL~~~~------------------~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~ 55 (248)
T PRK10444 2 KNVICDIDGVLMHDN------------------VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFA 55 (248)
T ss_pred cEEEEeCCCceEeCC------------------eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 478999999999863 124889999999986 58899999888877777777763
No 68
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=87.10 E-value=1.1 Score=42.18 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.7
Q ss_pred CcEEEEeCCCceeeec
Q 042807 125 KKLLVLDLNGLLADIV 140 (343)
Q Consensus 125 KklLVLDLDeTLi~~~ 140 (343)
.+++++||||||+...
T Consensus 2 ~kli~~DlDGTLl~~~ 17 (272)
T PRK15126 2 ARLAAFDMDGTLLMPD 17 (272)
T ss_pred ccEEEEeCCCcCcCCC
Confidence 4799999999999853
No 69
>PRK10976 putative hydrolase; Provisional
Probab=86.68 E-value=1.2 Score=41.58 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=13.8
Q ss_pred CcEEEEeCCCceeeec
Q 042807 125 KKLLVLDLNGLLADIV 140 (343)
Q Consensus 125 KklLVLDLDeTLi~~~ 140 (343)
.|++++||||||+...
T Consensus 2 ikli~~DlDGTLl~~~ 17 (266)
T PRK10976 2 YQVVASDLDGTLLSPD 17 (266)
T ss_pred ceEEEEeCCCCCcCCC
Confidence 3799999999999864
No 70
>PLN02423 phosphomannomutase
Probab=85.90 E-value=1.4 Score=41.49 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=31.4
Q ss_pred CCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcCceEEEEcCCchH
Q 042807 123 LRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQK 186 (343)
Q Consensus 123 ~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ 186 (343)
+.+.++++||||||+.... ..-|...+-++.+.+...++|-|.....
T Consensus 5 ~~~~i~~~D~DGTLl~~~~-----------------~i~~~~~~ai~~l~~~i~fviaTGR~~~ 51 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPRK-----------------EATPEMLEFMKELRKVVTVGVVGGSDLS 51 (245)
T ss_pred ccceEEEEeccCCCcCCCC-----------------cCCHHHHHHHHHHHhCCEEEEECCcCHH
Confidence 3455666999999997632 1235556778888888666666665333
No 71
>PLN02151 trehalose-phosphatase
Probab=84.58 E-value=1.3 Score=44.41 Aligned_cols=60 Identities=23% Similarity=0.344 Sum_probs=47.0
Q ss_pred CCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcCceEEEEcCCchHHHHHHHH
Q 042807 122 RLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVD 193 (343)
Q Consensus 122 ~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il~ 193 (343)
..++.+|+||+||||+-....+. .+.+-|.+.+-|+.|++.+.++|=|-....-++.++.
T Consensus 95 ~~~~~ll~lDyDGTL~PIv~~P~------------~A~~~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 95 EGKQIVMFLDYDGTLSPIVDDPD------------RAFMSKKMRNTVRKLAKCFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred cCCceEEEEecCccCCCCCCCcc------------cccCCHHHHHHHHHHhcCCCEEEEECCCHHHHHHHcC
Confidence 34578899999999996543221 4567788999999999999999999988888877664
No 72
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=84.42 E-value=2.3 Score=38.23 Aligned_cols=95 Identities=11% Similarity=-0.031 Sum_probs=60.1
Q ss_pred EEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeeccccc
Q 042807 158 VFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVW 236 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw 236 (343)
...+|++.+||+.+.+ .+.++|.|++...++..+++.+.-.. .+..++..+.+.. .+.++.. +..+.
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~--~f~~~~~~~~~~~-------~kp~~~~---~~~~~ 159 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD--YFSVVIGGDSLPN-------KKPDPAP---LLLAC 159 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc--CccEEEcCCCCCC-------CCcChHH---HHHHH
Confidence 5689999999999986 59999999999999999998763211 1233333332210 0111111 22232
Q ss_pred ccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 237 EISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 237 ~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
+++ +.+.+++|+|+|++.....--..|+
T Consensus 160 ~~~---------~~~~~~~i~igD~~~Di~~a~~~g~ 187 (226)
T PRK13222 160 EKL---------GLDPEEMLFVGDSRNDIQAARAAGC 187 (226)
T ss_pred HHc---------CCChhheEEECCCHHHHHHHHHCCC
Confidence 222 3678999999999876655444443
No 73
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=84.29 E-value=0.81 Score=42.71 Aligned_cols=48 Identities=27% Similarity=0.338 Sum_probs=32.3
Q ss_pred CCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcCceEE--EEcCC
Q 042807 124 RKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFERFDVG--VWSSR 183 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~yEIv--IwTSa 183 (343)
++.+|+||+||||+.....+. ....=|.+.+.|+.|.+....+ |=|..
T Consensus 2 ~~~~l~lD~DGTL~~~~~~p~------------~~~~~~~~~~~L~~L~~~~~~~v~ivSGR 51 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPDPD------------AAVVSDRLLTILQKLAARPHNAIWIISGR 51 (244)
T ss_pred CcEEEEEecCccccCCcCCCc------------ccCCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 578899999999997533221 2344577888888888875543 44444
No 74
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=83.76 E-value=1.2 Score=42.77 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=34.0
Q ss_pred CCCCCCcEEEEeCCCceeeecCCC----CC--CCCC---CceecceeEEeCCChHHHHHHHhcCceE
Q 042807 120 ISRLRKKLLVLDLNGLLADIVSPP----PK--DCKA---DKKIARHAVFKRPFCHDFLRFCFERFDV 177 (343)
Q Consensus 120 ~~~~~KklLVLDLDeTLi~~~~~~----~~--~~~~---Df~~~~~~v~~RP~L~eFL~~l~~~yEI 177 (343)
+..-+++.+|||||||+++-+.-. .+ +..| |.-+.-..-..=||.-|||+|+-++=-.
T Consensus 74 ~~k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ 140 (274)
T COG2503 74 KKKGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGK 140 (274)
T ss_pred cccCCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcE
Confidence 345567799999999999965211 01 1111 1001122334459999999888765433
No 75
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=83.67 E-value=1.5 Score=39.19 Aligned_cols=65 Identities=22% Similarity=0.268 Sum_probs=40.0
Q ss_pred CCcEEEEeCCCceeeecC-CCCCCCCCCceecceeEEeCCChHHHHHHHh-cCceEEEEcCCchHHHHHHHHHHc
Q 042807 124 RKKLLVLDLNGLLADIVS-PPPKDCKADKKIARHAVFKRPFCHDFLRFCF-ERFDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~~-~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~-~~yEIvIwTSa~~~ya~~il~~Ld 196 (343)
+.+++|+|+||||+...- .... +-....+.. |.+ .=++.+. +.+.++|=|+.....+..+++.+.
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~----~~~~~~~~~--~d~--~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lg 86 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNN----GEELKAFNV--RDG--YGIRCLLTSGIEVAIITGRKSKLVEDRMTTLG 86 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCC----CCEEEEEec--cch--HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcC
Confidence 578999999999997520 0000 000111111 221 1223333 569999999999999999998863
No 76
>PTZ00174 phosphomannomutase; Provisional
Probab=83.62 E-value=1.8 Score=40.40 Aligned_cols=52 Identities=21% Similarity=0.358 Sum_probs=33.2
Q ss_pred CCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHH
Q 042807 124 RKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVV 192 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il 192 (343)
..+++++||||||++.... .-|...+-|+.+.+. ..++|=|.....-+...+
T Consensus 4 ~~klia~DlDGTLL~~~~~-----------------is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l 56 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRNP-----------------ITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQL 56 (247)
T ss_pred CCeEEEEECcCCCcCCCCC-----------------CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 3689999999999986421 223455667777765 666666665555444433
No 77
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=83.62 E-value=1.9 Score=38.31 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=58.2
Q ss_pred EEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeecccccccccccc-ceeeecccc
Q 042807 158 VFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKA-LVFKELRKV 235 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~-~~vKDL~~L 235 (343)
+...|++.++|+.+.+. |.++|-|.+...++..+++.+.=. ..+.+++..+.... . +-.. .+.+=++.+
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~--~~fd~i~~s~~~~~--~-----KP~~~~~~~~~~~~ 161 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD--DPFDAVLSADAVRA--Y-----KPAPQVYQLALEAL 161 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh--hhhheeEehhhcCC--C-----CCCHHHHHHHHHHh
Confidence 34579999999999986 999999999999999998875311 12334444333210 0 0000 111222223
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCc
Q 042807 236 WEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYT 272 (343)
Q Consensus 236 w~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ng 272 (343)
| .+.+++|+|+|++.....--..|
T Consensus 162 ------------~-~~p~~~~~vgD~~~Di~~A~~~G 185 (198)
T TIGR01428 162 ------------G-VPPDEVLFVASNPWDLGGAKKFG 185 (198)
T ss_pred ------------C-CChhhEEEEeCCHHHHHHHHHCC
Confidence 3 68899999999986554433444
No 78
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=83.35 E-value=2.3 Score=38.32 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=63.2
Q ss_pred eEEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeecccc
Q 042807 157 AVFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKV 235 (343)
Q Consensus 157 ~v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~L 235 (343)
.+...|++.++|+.+.+ .+.++|-|++...++..+++.+.=.. .+..++..+.+... +-++.. +..+
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~--~f~~i~~~~~~~~~-------Kp~p~~---~~~~ 147 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE--FFDVVITLDDVEHA-------KPDPEP---VLKA 147 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh--ceeEEEecCcCCCC-------CCCcHH---HHHH
Confidence 34567999999999986 59999999999999999998864221 24445554444211 111111 1222
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 236 WEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 236 w~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
.+++ | .+.+++++|+|++.-...--..|+
T Consensus 148 ~~~~--------~-~~~~~~~~iGDs~~Di~aa~~aG~ 176 (214)
T PRK13288 148 LELL--------G-AKPEEALMVGDNHHDILAGKNAGT 176 (214)
T ss_pred HHHc--------C-CCHHHEEEECCCHHHHHHHHHCCC
Confidence 2222 3 678999999999977666556665
No 79
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=83.22 E-value=1.8 Score=39.01 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=35.1
Q ss_pred EEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 128 LVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 128 LVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
+++||||||+.... ...|-..+-|+.+.+. ..+++=|......+..+++.+.
T Consensus 1 i~~DlDGTLl~~~~-----------------~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~ 53 (225)
T TIGR01482 1 IASDIDGTLTDPNR-----------------AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIG 53 (225)
T ss_pred CeEeccCccCCCCc-----------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhC
Confidence 58999999998632 1223344556666654 6777777777777777777664
No 80
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=83.21 E-value=2.1 Score=40.45 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=34.9
Q ss_pred cEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHH
Q 042807 126 KLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKN 187 (343)
Q Consensus 126 klLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~y 187 (343)
+++++||||||++..... -..=|+..++|+.+.+. ..+++-|..+..-
T Consensus 2 k~i~~D~DGtl~~~~~~~--------------~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~ 50 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKS--------------GVAVPGSQEAVKRLRGASVKVRFVTNTTKES 50 (257)
T ss_pred CEEEEeCCCeEEeCCCcc--------------cCcCCCHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 579999999999863210 01347899999999975 8888888654443
No 81
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=83.18 E-value=1.9 Score=37.16 Aligned_cols=86 Identities=14% Similarity=0.027 Sum_probs=52.2
Q ss_pred EEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccc-eeeecccc
Q 042807 158 VFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKAL-VFKELRKV 235 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~-~vKDL~~L 235 (343)
+...|++.+||+.+.+ .+.++|.|++...+ ..++..+.-.. .+..++..+.+.. . +-.+. +.+=++.+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~--~f~~i~~~~~~~~--~-----KP~~~~~~~~~~~~ 153 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD--LFDVVIFSGDVGR--G-----KPDPDIYLLALKKL 153 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH--HCCEEEEcCCCCC--C-----CCCHHHHHHHHHHc
Confidence 4678999999999986 59999999999988 66555432111 2333333222210 0 00011 11112222
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEECCchhcc
Q 042807 236 WEISDPNCPWAKGDYNESNTVLLDDSPYKAL 266 (343)
Q Consensus 236 w~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~ 266 (343)
| .+.+++|+|||++....
T Consensus 154 ------------~-~~~~~~~~vgD~~~di~ 171 (183)
T TIGR01509 154 ------------G-LKPEECLFVDDSPAGIE 171 (183)
T ss_pred ------------C-CCcceEEEEcCCHHHHH
Confidence 3 68899999999987543
No 82
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=83.15 E-value=1.5 Score=41.64 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=63.6
Q ss_pred EEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeecccccccccccc-ceeeecccc
Q 042807 158 VFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKA-LVFKELRKV 235 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~-~~vKDL~~L 235 (343)
+...|++.++|+.|.+. +-++|-|+++..++..+++.+.=.. .+..++..+.+.. .+ -.+ .+.+=+.++
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~--~Fd~ii~~~d~~~--~K-----P~Pe~~~~a~~~l 178 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG--FFSVVLAAEDVYR--GK-----PDPEMFMYAAERL 178 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh--hCcEEEecccCCC--CC-----CCHHHHHHHHHHh
Confidence 44689999999999964 9999999999999999999863211 2344554444321 11 011 122333444
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 236 WEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 236 w~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
| .+.+++|+|+|+..-...--..|+
T Consensus 179 ------------~-~~p~~~l~IgDs~~Di~aA~~aG~ 203 (260)
T PLN03243 179 ------------G-FIPERCIVFGNSNSSVEAAHDGCM 203 (260)
T ss_pred ------------C-CChHHeEEEcCCHHHHHHHHHcCC
Confidence 3 788999999999887666555665
No 83
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=83.06 E-value=1.8 Score=38.82 Aligned_cols=94 Identities=6% Similarity=-0.075 Sum_probs=58.6
Q ss_pred EEeCCChHHHHHHHhcCceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccc-eeeeccccc
Q 042807 158 VFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKAL-VFKELRKVW 236 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~-~vKDL~~Lw 236 (343)
+..+|+..++|+.+.+.+.++|=|++....+..+++.+.=.. .|.+++..+.+.. .+.++. +.+=++.+
T Consensus 96 ~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~--~fd~i~~~~~~~~-------~KP~~~~~~~~~~~~- 165 (224)
T TIGR02254 96 HQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP--FFDDIFVSEDAGI-------QKPDKEIFNYALERM- 165 (224)
T ss_pred CeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh--hcCEEEEcCccCC-------CCCCHHHHHHHHHHh-
Confidence 567999999999999889999999999999999988753211 2334444333321 011111 11112222
Q ss_pred ccCCCCCCCCCCCCCCCcEEEEECCc-hhcccCCCCc
Q 042807 237 EISDPNCPWAKGDYNESNTVLLDDSP-YKALLNPPYT 272 (343)
Q Consensus 237 ~~~~p~~p~~~G~rdl~ntIlIDDsp-~~~~~qP~Ng 272 (343)
++.+.+++|+|+|++ .....--..|
T Consensus 166 -----------~~~~~~~~v~igD~~~~di~~A~~~G 191 (224)
T TIGR02254 166 -----------PKFSKEEVLMIGDSLTADIKGGQNAG 191 (224)
T ss_pred -----------cCCCchheEEECCCcHHHHHHHHHCC
Confidence 126788999999997 3444333444
No 84
>PRK09449 dUMP phosphatase; Provisional
Probab=82.80 E-value=1.8 Score=39.09 Aligned_cols=38 Identities=8% Similarity=0.033 Sum_probs=34.1
Q ss_pred EEeCCChHHHHHHHhcCceEEEEcCCchHHHHHHHHHH
Q 042807 158 VFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFL 195 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il~~L 195 (343)
....|++.++|+.|.+.|-++|-|++...++..+++.+
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~ 131 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERT 131 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhC
Confidence 34689999999999989999999999999999988874
No 85
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=82.63 E-value=1.9 Score=38.44 Aligned_cols=94 Identities=10% Similarity=0.022 Sum_probs=59.4
Q ss_pred EEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeecccccccccccc-ceeeecccc
Q 042807 158 VFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKA-LVFKELRKV 235 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~-~~vKDL~~L 235 (343)
+...|++.++|+.+.+. +.++|-|++...+++.+++.+.=.. .+..+...+... . .+.++ .+.+=+..+
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~--~f~~~~~~~~~~--~-----~Kp~p~~~~~~~~~~ 154 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK--YFSVLIGGDSLA--Q-----RKPHPDPLLLAAERL 154 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh--hCcEEEecCCCC--C-----CCCChHHHHHHHHHc
Confidence 56799999999999864 9999999999999999999853211 122233322211 0 01011 122222333
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 236 WEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 236 w~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
| .+.+++++|+|++.-...--..|+
T Consensus 155 ------------~-~~~~~~~~igDs~~d~~aa~~aG~ 179 (213)
T TIGR01449 155 ------------G-VAPQQMVYVGDSRVDIQAARAAGC 179 (213)
T ss_pred ------------C-CChhHeEEeCCCHHHHHHHHHCCC
Confidence 3 678999999999876655444554
No 86
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=82.53 E-value=2.6 Score=37.70 Aligned_cols=95 Identities=9% Similarity=-0.029 Sum_probs=61.5
Q ss_pred eEEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeecccccccccccccee-eeccc
Q 042807 157 AVFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVF-KELRK 234 (343)
Q Consensus 157 ~v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~v-KDL~~ 234 (343)
.+...|++.++|++|.+ .+.++|-|++...++..+++.+.-.. .+..+++.+++.. . +.+...+ +=++.
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~--~f~~i~~~~~~~~--~-----KP~~~~~~~~~~~ 143 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP--LFDHVIGSDEVPR--P-----KPAPDIVREALRL 143 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh--heeeEEecCcCCC--C-----CCChHHHHHHHHH
Confidence 35568999999999976 59999999999999999998764221 2344444444321 0 1111111 11222
Q ss_pred ccccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 235 VWEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 235 Lw~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
+ | .+.+++|+|+|++.-...--..|+
T Consensus 144 ~------------~-~~~~~~l~igD~~~Di~aA~~~Gi 169 (205)
T TIGR01454 144 L------------D-VPPEDAVMVGDAVTDLASARAAGT 169 (205)
T ss_pred c------------C-CChhheEEEcCCHHHHHHHHHcCC
Confidence 2 3 678999999999876655445554
No 87
>PLN02580 trehalose-phosphatase
Probab=82.08 E-value=2.1 Score=43.43 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=49.2
Q ss_pred CCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcCceEEEEcCCchHHHHHHHH
Q 042807 122 RLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVD 193 (343)
Q Consensus 122 ~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il~ 193 (343)
..++.+|.||.||||.-....+. .+.+=|.+.+-|+.|++++-++|=|-....-++.++.
T Consensus 116 ~~k~~~LfLDyDGTLaPIv~~Pd------------~A~~s~~~~~aL~~La~~~~VAIVSGR~~~~L~~~l~ 175 (384)
T PLN02580 116 KGKKIALFLDYDGTLSPIVDDPD------------RALMSDAMRSAVKNVAKYFPTAIISGRSRDKVYELVG 175 (384)
T ss_pred hcCCeEEEEecCCccCCCCCCcc------------cccCCHHHHHHHHHHhhCCCEEEEeCCCHHHHHHHhC
Confidence 34677899999999987653322 4677789999999999999999999999988888775
No 88
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=81.43 E-value=1.8 Score=40.89 Aligned_cols=75 Identities=15% Similarity=0.057 Sum_probs=49.3
Q ss_pred CCCCcEEEEeCCCceeeecCCC----CCCCCCC---ce--ecceeEEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHH
Q 042807 122 RLRKKLLVLDLNGLLADIVSPP----PKDCKAD---KK--IARHAVFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERV 191 (343)
Q Consensus 122 ~~~KklLVLDLDeTLi~~~~~~----~~~~~~D---f~--~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~i 191 (343)
..+|..+|||+|+|++....-. -.+...| +. +....--.-|+..+|++++.+ -+.|++-|...+...+..
T Consensus 74 ~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T 153 (229)
T TIGR01675 74 GDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNAT 153 (229)
T ss_pred CCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHH
Confidence 4588999999999999964210 0011111 10 111223456889999999876 599999999988876666
Q ss_pred HHHHc
Q 042807 192 VDFLM 196 (343)
Q Consensus 192 l~~Ld 196 (343)
++.|.
T Consensus 154 ~~nL~ 158 (229)
T TIGR01675 154 LDNLI 158 (229)
T ss_pred HHHHH
Confidence 66654
No 89
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=81.31 E-value=1.8 Score=40.29 Aligned_cols=57 Identities=18% Similarity=0.063 Sum_probs=35.9
Q ss_pred CcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcCceEEEEcCCch-HHHHHHHHHH
Q 042807 125 KKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQ-KNVERVVDFL 195 (343)
Q Consensus 125 KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~yEIvIwTSa~~-~ya~~il~~L 195 (343)
+.+++.||||||+.+... .....|.+.+.++.+.+.--.+|+.||.. .-+..+++.+
T Consensus 1 ~~li~tDlDGTLl~~~~~--------------~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~ 58 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTDG--------------DNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQK 58 (249)
T ss_pred CeEEEEcCCCcCcCCCCC--------------ChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcC
Confidence 468899999999975311 11234777777877777764555555544 4455555544
No 90
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=81.10 E-value=3.6 Score=39.14 Aligned_cols=43 Identities=14% Similarity=0.008 Sum_probs=32.5
Q ss_pred cEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc-CceEEEEcCCchH
Q 042807 126 KLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE-RFDVGVWSSRTQK 186 (343)
Q Consensus 126 klLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ 186 (343)
+++++||||||+... ..=|+..++|+.+.+ ...+++-|+.+..
T Consensus 3 ~~~~~D~DGtl~~~~------------------~~~~ga~e~l~~L~~~g~~~~~~Tnns~~ 46 (279)
T TIGR01452 3 QGFIFDCDGVLWLGE------------------RVVPGAPELLDRLARAGKAALFVTNNSTK 46 (279)
T ss_pred cEEEEeCCCceEcCC------------------eeCcCHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 578999999998742 123778999999986 4788888875433
No 91
>PRK11587 putative phosphatase; Provisional
Probab=81.08 E-value=3.4 Score=37.50 Aligned_cols=95 Identities=9% Similarity=-0.032 Sum_probs=59.1
Q ss_pred eEEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeecccc
Q 042807 157 AVFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKV 235 (343)
Q Consensus 157 ~v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~L 235 (343)
.+...|++.++|++|.+ .+.++|-|++...++..+++...-. .+..++..+++... + .....+.+-+..+
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~---~~~~i~~~~~~~~~--K----P~p~~~~~~~~~~ 151 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP---APEVFVTAERVKRG--K----PEPDAYLLGAQLL 151 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC---CccEEEEHHHhcCC--C----CCcHHHHHHHHHc
Confidence 34568999999999975 5999999999998887777653211 11223333332110 0 0001233333444
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 236 WEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 236 w~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
| ...+++|+|+|++.....--..|+
T Consensus 152 ------------g-~~p~~~l~igDs~~di~aA~~aG~ 176 (218)
T PRK11587 152 ------------G-LAPQECVVVEDAPAGVLSGLAAGC 176 (218)
T ss_pred ------------C-CCcccEEEEecchhhhHHHHHCCC
Confidence 4 788999999999976655445554
No 92
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=80.47 E-value=3 Score=45.41 Aligned_cols=60 Identities=22% Similarity=0.213 Sum_probs=44.4
Q ss_pred CCCCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 120 ISRLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 120 ~~~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
.....++++++||||||++... ++.. ...+-|+.+.+. ..++|=|+.+...+..+++.+.
T Consensus 411 ~~~~~~KLIfsDLDGTLLd~d~---------------~i~~--~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lg 471 (694)
T PRK14502 411 SSGQFKKIVYTDLDGTLLNPLT---------------YSYS--TALDALRLLKDKELPLVFCSAKTMGEQDLYRNELG 471 (694)
T ss_pred CcCceeeEEEEECcCCCcCCCC---------------ccCH--HHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcC
Confidence 4556789999999999998642 1221 234567777654 8889999999888888888875
No 93
>PHA02597 30.2 hypothetical protein; Provisional
Probab=80.23 E-value=1 Score=40.05 Aligned_cols=38 Identities=8% Similarity=-0.135 Sum_probs=26.6
Q ss_pred eEEeCCChHHHHHHHhcCceEEEEcCCchHHHHHHHHH
Q 042807 157 AVFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDF 194 (343)
Q Consensus 157 ~v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il~~ 194 (343)
.+...||+.++|+.|.+.+.+++=|++.......+++.
T Consensus 72 ~~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~ 109 (197)
T PHA02597 72 YLSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQ 109 (197)
T ss_pred hccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhh
Confidence 35579999999999998887766666555444434443
No 94
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=79.98 E-value=2.8 Score=39.15 Aligned_cols=95 Identities=12% Similarity=0.007 Sum_probs=62.2
Q ss_pred EEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeeccccc
Q 042807 158 VFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVW 236 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw 236 (343)
+...|++.++|++|.+ .+.++|=|++...+++.+++.+.-.. .|..+...+.+.. .++ ....+.+=+..+
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~--~Fd~iv~~~~~~~--~KP----~p~~~~~a~~~~- 177 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD--FFQAVIIGSECEH--AKP----HPDPYLKALEVL- 177 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh--hCcEEEecCcCCC--CCC----ChHHHHHHHHHh-
Confidence 4567999999999965 59999999999999999999864221 2334444444321 110 000122323333
Q ss_pred ccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 237 EISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 237 ~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
| .+.+++|+|.|++.-...--..|+
T Consensus 178 -----------~-~~~~~~l~vgDs~~Di~aA~~aGi 202 (248)
T PLN02770 178 -----------K-VSKDHTFVFEDSVSGIKAGVAAGM 202 (248)
T ss_pred -----------C-CChhHEEEEcCCHHHHHHHHHCCC
Confidence 3 678999999999976655555565
No 95
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=79.87 E-value=2.5 Score=41.37 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=36.7
Q ss_pred EEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc-----CceEEEEcCCc----hHHHHHHHH
Q 042807 127 LLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE-----RFDVGVWSSRT----QKNVERVVD 193 (343)
Q Consensus 127 lLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~-----~yEIvIwTSa~----~~ya~~il~ 193 (343)
.+++|+||||++... .=|+..++++.+.. ...+++.|..+ ..+++.+.+
T Consensus 2 ~~ifD~DGvL~~g~~------------------~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~ 59 (321)
T TIGR01456 2 GFAFDIDGVLFRGKK------------------PIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISS 59 (321)
T ss_pred EEEEeCcCceECCcc------------------ccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHH
Confidence 589999999998632 16888999999997 68888888654 345555533
No 96
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=79.15 E-value=1.8 Score=38.07 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=30.6
Q ss_pred eCCChHHHHHHHhcCceEEEEcCCchHHHHHHHHHH
Q 042807 160 KRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFL 195 (343)
Q Consensus 160 ~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il~~L 195 (343)
..|++.++|+.|. +.++|.|++...++..+++.+
T Consensus 85 ~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~ 118 (184)
T TIGR01993 85 PDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRL 118 (184)
T ss_pred CCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHc
Confidence 4688999999997 689999999999999999886
No 97
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=79.13 E-value=2.7 Score=45.68 Aligned_cols=60 Identities=27% Similarity=0.354 Sum_probs=43.8
Q ss_pred CCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc--CceEEEEcCCchHHHHHHHHH
Q 042807 123 LRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE--RFDVGVWSSRTQKNVERVVDF 194 (343)
Q Consensus 123 ~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~--~yEIvIwTSa~~~ya~~il~~ 194 (343)
..++++++|+||||+.....+. ....-|.+.+.|+.|.+ ...|+|=|..+...++.++..
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~~~------------~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~ 551 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPDPE------------LAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGD 551 (726)
T ss_pred ccceEEEEecCccccCCCCCcc------------cCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCC
Confidence 4678999999999997532211 12334677888999987 688899999888877766543
No 98
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=78.80 E-value=3.7 Score=37.81 Aligned_cols=94 Identities=14% Similarity=-0.003 Sum_probs=59.4
Q ss_pred EEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeecccccccccccc-ceeeecccc
Q 042807 158 VFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKA-LVFKELRKV 235 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~-~~vKDL~~L 235 (343)
+...|++.++|+.+.+ .+-++|=|++...++..+++.+.-.. .+..++..+... ..+ -.+ .+.+=++++
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~--~fd~iv~s~~~~--~~K-----P~p~~~~~~~~~~ 162 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDA--HLDLLLSTHTFG--YPK-----EDQRLWQAVAEHT 162 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHH--HCCEEEEeeeCC--CCC-----CCHHHHHHHHHHc
Confidence 4468999999999997 49999999999999999988742111 122333222211 000 000 122223333
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 236 WEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 236 w~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
| .+.+++++|+|++.....--..|+
T Consensus 163 ------------~-~~p~~~l~igDs~~di~aA~~aG~ 187 (224)
T PRK14988 163 ------------G-LKAERTLFIDDSEPILDAAAQFGI 187 (224)
T ss_pred ------------C-CChHHEEEEcCCHHHHHHHHHcCC
Confidence 3 789999999999987655445554
No 99
>PLN03017 trehalose-phosphatase
Probab=78.75 E-value=3 Score=42.11 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=44.2
Q ss_pred CCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcCceEEEEcCCchHHHHHHH
Q 042807 122 RLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVV 192 (343)
Q Consensus 122 ~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il 192 (343)
..++.+|+||+||||+-....+. ...+=|.+.+-|+.|.+.+.++|=|-....-+..++
T Consensus 108 ~~k~~llflD~DGTL~Piv~~p~------------~a~i~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 108 RGKQIVMFLDYDGTLSPIVDDPD------------KAFMSSKMRRTVKKLAKCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred cCCCeEEEEecCCcCcCCcCCcc------------cccCCHHHHHHHHHHhcCCcEEEEeCCCHHHHHHhh
Confidence 34678899999999994332111 224557788889999988999999998888888774
No 100
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=78.66 E-value=6.7 Score=37.37 Aligned_cols=127 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred CCcEEEEeCCCceeeecCCCCCCCCCCce-----------------------------ecceeEEeCCChHHHHHHHhcC
Q 042807 124 RKKLLVLDLNGLLADIVSPPPKDCKADKK-----------------------------IARHAVFKRPFCHDFLRFCFER 174 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~~~~~~~~~~Df~-----------------------------~~~~~v~~RP~L~eFL~~l~~~ 174 (343)
...++|+|+|+||+-.. ...+....+. ........=|...++++.+.+.
T Consensus 19 ~~tLvvfDiDdTLi~~~--~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~ 96 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPK--QPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNK 96 (252)
T ss_pred CCeEEEEEcchhhhcCc--cccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHC
Q ss_pred -ceEEEEcCCchHHHHHHHHHH------cCCCC---------ceEEEEEecCceeeccccccccccccceeeeccccccc
Q 042807 175 -FDVGVWSSRTQKNVERVVDFL------MGDMK---------HKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWEI 238 (343)
Q Consensus 175 -yEIvIwTSa~~~ya~~il~~L------dp~~~---------~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~~ 238 (343)
.-++..|+..+.+...-++.| +.+.. ..+..-..+......|.-...+..|....+.+-.--
T Consensus 97 ~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~fL~~~-- 174 (252)
T PF11019_consen 97 GIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKYFLDKI-- 174 (252)
T ss_pred CCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHHHHHHc--
Q ss_pred CCCCCCCCCCCCCCCcEEEEECCchh
Q 042807 239 SDPNCPWAKGDYNESNTVLLDDSPYK 264 (343)
Q Consensus 239 ~~p~~p~~~G~rdl~ntIlIDDsp~~ 264 (343)
++..+++|+|||+..+
T Consensus 175 ----------~~~pk~IIfIDD~~~n 190 (252)
T PF11019_consen 175 ----------NQSPKKIIFIDDNKEN 190 (252)
T ss_pred ----------CCCCCeEEEEeCCHHH
No 101
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=77.93 E-value=2.8 Score=40.69 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=36.4
Q ss_pred eeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHH
Q 042807 156 HAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFL 195 (343)
Q Consensus 156 ~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~L 195 (343)
..+..|||+.+|++.|.++ +.++|+|+|...+++.+++.+
T Consensus 118 ~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~l 158 (277)
T TIGR01544 118 SDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQA 158 (277)
T ss_pred cCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHc
Confidence 4688899999999999765 999999999999999999974
No 102
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=77.69 E-value=1.2 Score=38.90 Aligned_cols=90 Identities=10% Similarity=0.064 Sum_probs=55.8
Q ss_pred CCChHHHHHHHhcCceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeecccccccCC
Q 042807 161 RPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWEISD 240 (343)
Q Consensus 161 RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~~~~ 240 (343)
-|+ .+.|..+.+.+.++|=|++...+++.+++.+.=.. .+..+...+++... +..+ .-+.....++
T Consensus 90 ~~~-~e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~--~fd~i~~~~~~~~~-------KP~p---~~~~~~~~~~- 155 (188)
T PRK10725 90 LPL-IEVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR--YFDAVVAADDVQHH-------KPAP---DTFLRCAQLM- 155 (188)
T ss_pred ccH-HHHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh--HceEEEehhhccCC-------CCCh---HHHHHHHHHc-
Confidence 455 48888888778999999999999999999863211 24455555443210 0010 1122222222
Q ss_pred CCCCCCCCCCCCCcEEEEECCchhcccCCCCc
Q 042807 241 PNCPWAKGDYNESNTVLLDDSPYKALLNPPYT 272 (343)
Q Consensus 241 p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ng 272 (343)
| .+.+++|+|+|++.-+..--..|
T Consensus 156 -------~-~~~~~~l~igDs~~di~aA~~aG 179 (188)
T PRK10725 156 -------G-VQPTQCVVFEDADFGIQAARAAG 179 (188)
T ss_pred -------C-CCHHHeEEEeccHhhHHHHHHCC
Confidence 3 67889999999987665444444
No 103
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=77.61 E-value=3.9 Score=39.32 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=59.3
Q ss_pred EeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCCCce-EEEEEecCceeecccccccccccc-ceeeecccc
Q 042807 159 FKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDMKHK-LLFCWDLSYCTATSFKALENKYKA-LVFKELRKV 235 (343)
Q Consensus 159 ~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~~~~-i~~vl~Rd~C~~~~~~~~e~~~k~-~~vKDL~~L 235 (343)
...||+.++|+++.+ .+.++|-|++...++..+++.+....... +.++ ..+.|.. . +-.+ .+.+=++.+
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v-~~~~~~~--~-----KP~p~~~~~a~~~~ 215 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVF-AGDDVPK--K-----KPDPDIYNLAAETL 215 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEE-eccccCC--C-----CCCHHHHHHHHHHh
Confidence 568999999999986 59999999999999999998763211111 1222 3333210 0 0011 122222333
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 236 WEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 236 w~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
| .+.+++|+|+|++.-...--..|+
T Consensus 216 ------------~-~~p~~~l~IGDs~~Di~aA~~aG~ 240 (286)
T PLN02779 216 ------------G-VDPSRCVVVEDSVIGLQAAKAAGM 240 (286)
T ss_pred ------------C-cChHHEEEEeCCHHhHHHHHHcCC
Confidence 3 788999999999976665555554
No 104
>PRK11587 putative phosphatase; Provisional
Probab=77.19 E-value=1.2 Score=40.51 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=14.2
Q ss_pred CcEEEEeCCCceeeec
Q 042807 125 KKLLVLDLNGLLADIV 140 (343)
Q Consensus 125 KklLVLDLDeTLi~~~ 140 (343)
-+.+++||||||+++.
T Consensus 3 ~k~viFDlDGTL~Ds~ 18 (218)
T PRK11587 3 CKGFLFDLDGTLVDSL 18 (218)
T ss_pred CCEEEEcCCCCcCcCH
Confidence 4689999999999985
No 105
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=77.07 E-value=5.6 Score=33.62 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=33.1
Q ss_pred EEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHH
Q 042807 158 VFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFL 195 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~L 195 (343)
....|++.++|+.+.+ .+.++|.|++....+..+++..
T Consensus 63 ~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~ 101 (154)
T TIGR01549 63 EAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH 101 (154)
T ss_pred heeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH
Confidence 3446999999999964 5999999999999999999984
No 106
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=76.95 E-value=1.4 Score=39.40 Aligned_cols=81 Identities=11% Similarity=0.104 Sum_probs=50.7
Q ss_pred CCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeecccccccC
Q 042807 161 RPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWEIS 239 (343)
Q Consensus 161 RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~~~ 239 (343)
.|+..++|+.+.+. +.++|-|++...+++.+++.+.-.. .+.++...+.... +. .. ..+.+=++.+
T Consensus 108 ~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~--~f~~~~~~~~~~~---KP---~p-~~~~~~~~~~---- 174 (197)
T TIGR01548 108 LLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEI--LFPVQIWMEDCPP---KP---NP-EPLILAAKAL---- 174 (197)
T ss_pred ccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchh--hCCEEEeecCCCC---Cc---CH-HHHHHHHHHh----
Confidence 34558999999864 9999999999999999999863221 1233433333211 10 00 0122222333
Q ss_pred CCCCCCCCCCCCCCcEEEEECCch
Q 042807 240 DPNCPWAKGDYNESNTVLLDDSPY 263 (343)
Q Consensus 240 ~p~~p~~~G~rdl~ntIlIDDsp~ 263 (343)
| .+.+++|+|.|++.
T Consensus 175 --------~-~~~~~~i~vGD~~~ 189 (197)
T TIGR01548 175 --------G-VEACHAAMVGDTVD 189 (197)
T ss_pred --------C-cCcccEEEEeCCHH
Confidence 3 67889999999985
No 107
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=76.75 E-value=4.3 Score=36.97 Aligned_cols=39 Identities=23% Similarity=0.133 Sum_probs=35.7
Q ss_pred eEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHH
Q 042807 157 AVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFL 195 (343)
Q Consensus 157 ~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~L 195 (343)
.+..+||..+||+++.+. +.++|-|++...|++++++.+
T Consensus 72 ~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 72 TAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 467899999999999864 999999999999999999986
No 108
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=76.73 E-value=8.3 Score=34.63 Aligned_cols=40 Identities=20% Similarity=0.081 Sum_probs=35.4
Q ss_pred eEEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHc
Q 042807 157 AVFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 157 ~v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ld 196 (343)
.+..+|++.+||+.+.+ .+.++|-|++...++..+++.+.
T Consensus 83 ~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~ 123 (219)
T TIGR00338 83 NLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLG 123 (219)
T ss_pred cCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcC
Confidence 34579999999999997 59999999999999999998863
No 109
>PLN02887 hydrolase family protein
Probab=76.65 E-value=4.6 Score=43.13 Aligned_cols=57 Identities=14% Similarity=0.178 Sum_probs=40.1
Q ss_pred CCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 123 LRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 123 ~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
+.-|++++||||||+..... .-|.-.+-|+.+.+. ..++|=|......+..+++.+.
T Consensus 306 ~~iKLIa~DLDGTLLn~d~~-----------------Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~ 363 (580)
T PLN02887 306 PKFSYIFCDMDGTLLNSKSQ-----------------ISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVD 363 (580)
T ss_pred cCccEEEEeCCCCCCCCCCc-----------------cCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhC
Confidence 35689999999999986321 223344566666654 7788888777777778887764
No 110
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=76.38 E-value=4.3 Score=41.21 Aligned_cols=95 Identities=8% Similarity=0.029 Sum_probs=64.1
Q ss_pred EEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeeccccc
Q 042807 158 VFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVW 236 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw 236 (343)
....||+.+||++|.+ .+.++|=|++...+++.+++.+.=.. .|..++..+.+.. .+. .-..+.+=++.+
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~--yFd~Iv~sddv~~--~KP----~Peifl~A~~~l- 285 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG--FFSVIVAAEDVYR--GKP----DPEMFIYAAQLL- 285 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH--HceEEEecCcCCC--CCC----CHHHHHHHHHHc-
Confidence 3457999999999986 49999999999999999999864221 2455666555421 110 000233334444
Q ss_pred ccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 237 EISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 237 ~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
| .+.+++|+|.|++.-...--..|+
T Consensus 286 -----------g-l~Peecl~IGDS~~DIeAAk~AGm 310 (381)
T PLN02575 286 -----------N-FIPERCIVFGNSNQTVEAAHDARM 310 (381)
T ss_pred -----------C-CCcccEEEEcCCHHHHHHHHHcCC
Confidence 3 789999999999876655444454
No 111
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=76.06 E-value=1.8 Score=38.56 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=28.5
Q ss_pred EeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHH
Q 042807 159 FKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFL 195 (343)
Q Consensus 159 ~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~L 195 (343)
..-|++.++|++|.+. +.++|-|++... +..+++.+
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~ 141 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEAL 141 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHC
Confidence 4579999999999874 999999998764 46666654
No 112
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=75.99 E-value=4 Score=37.28 Aligned_cols=51 Identities=16% Similarity=-0.025 Sum_probs=38.5
Q ss_pred CCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc-CceEEEEcC
Q 042807 124 RKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE-RFDVGVWSS 182 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTS 182 (343)
..+.|+||.||||+--... +....--....|++-+=|..+.+ .|-+||+|-
T Consensus 4 ~~k~lflDRDGtin~d~~~--------yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTN 55 (181)
T COG0241 4 DQKALFLDRDGTINIDKGD--------YVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTN 55 (181)
T ss_pred CCcEEEEcCCCceecCCCc--------ccCcHHHhccCccHHHHHHHHHhCCCeEEEEEC
Confidence 3789999999999984321 22122346778999999999976 599999997
No 113
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=75.99 E-value=3.1 Score=36.33 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=14.6
Q ss_pred CCcEEEEeCCCceeeec
Q 042807 124 RKKLLVLDLNGLLADIV 140 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~ 140 (343)
+-+.+++|+||||+++.
T Consensus 4 ~~~~viFD~DGTLiDs~ 20 (188)
T PRK10725 4 RYAGLIFDMDGTILDTE 20 (188)
T ss_pred cceEEEEcCCCcCccCH
Confidence 35789999999999975
No 114
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=75.84 E-value=3.6 Score=37.31 Aligned_cols=95 Identities=14% Similarity=0.008 Sum_probs=59.6
Q ss_pred EEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeeccccc
Q 042807 158 VFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVW 236 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw 236 (343)
....|++.++|+.+.+ .+.++|-|++...+++.+++.+.=.. .+..++..+.... . +.++ .-+..+.
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~--~f~~~~~~~~~~~--~-----Kp~~---~~~~~~~ 158 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD--YFDALASAEKLPY--S-----KPHP---EVYLNCA 158 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh--cccEEEEcccCCC--C-----CCCH---HHHHHHH
Confidence 3467999999999986 59999999999999999998753211 2233333332210 0 1111 1122222
Q ss_pred ccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 237 EISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 237 ~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
+.+ | .+.+++++|+|++.-...--..|+
T Consensus 159 ~~~--------~-~~~~~~~~igDs~~Di~aA~~aG~ 186 (222)
T PRK10826 159 AKL--------G-VDPLTCVALEDSFNGMIAAKAARM 186 (222)
T ss_pred HHc--------C-CCHHHeEEEcCChhhHHHHHHcCC
Confidence 222 3 788999999999976555444443
No 115
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=75.49 E-value=1.7 Score=39.26 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=34.8
Q ss_pred EEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHc
Q 042807 158 VFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ld 196 (343)
....|++.+||+.+.+ .+.++|-|++...++..+++.+.
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~ 125 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLG 125 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhh
Confidence 4578999999999974 69999999999999999999764
No 116
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=75.25 E-value=4.4 Score=37.66 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=33.8
Q ss_pred EEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCc----hHHHHHHHH
Q 042807 128 LVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRT----QKNVERVVD 193 (343)
Q Consensus 128 LVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~----~~ya~~il~ 193 (343)
++||+||||+.... . =|+..++|..+.+. +.+++-|..+ ..+++.+.+
T Consensus 1 ~lfD~DGvL~~~~~----------------~--~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~ 53 (236)
T TIGR01460 1 FLFDIDGVLWLGHK----------------P--IPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSS 53 (236)
T ss_pred CEEeCcCccCcCCc----------------c--CcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999642 1 24788999999875 8888887333 445555544
No 117
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=75.13 E-value=1.4 Score=38.22 Aligned_cols=92 Identities=18% Similarity=0.092 Sum_probs=54.3
Q ss_pred EEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeeccccc
Q 042807 158 VFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVW 236 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw 236 (343)
+...|++.++|+.+.+. +.++|=|++ .+++.+++.+.=.. .+..++..+.+... +..+.. ...+.
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~--~f~~v~~~~~~~~~-------kp~~~~---~~~~~ 152 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD--YFDAIVDADEVKEG-------KPHPET---FLLAA 152 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH--HCCEeeehhhCCCC-------CCChHH---HHHHH
Confidence 56799999999999864 889888887 77888888642111 13334443332110 000001 11222
Q ss_pred ccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCc
Q 042807 237 EISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYT 272 (343)
Q Consensus 237 ~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ng 272 (343)
+++ | .+.+++|+|+|++.....--..|
T Consensus 153 ~~~--------~-~~~~~~v~IgD~~~di~aA~~~G 179 (185)
T TIGR02009 153 ELL--------G-VSPNECVVFEDALAGVQAARAAG 179 (185)
T ss_pred HHc--------C-CCHHHeEEEeCcHhhHHHHHHCC
Confidence 222 3 67899999999986654433333
No 118
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=74.42 E-value=6.6 Score=36.86 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=29.2
Q ss_pred cEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcC
Q 042807 126 KLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSS 182 (343)
Q Consensus 126 klLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTS 182 (343)
+++++||||||+.... . =|+..++|+.+.+. ..+++-|.
T Consensus 2 ~~~~~D~DGtl~~~~~----------------~--i~~a~~~l~~l~~~g~~~~~~Tn 41 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKE----------------R--IPEAETFVHELQKRDIPYLFVTN 41 (249)
T ss_pred CEEEEeCCCceEcCCe----------------e--CcCHHHHHHHHHHCCCeEEEEeC
Confidence 4789999999998531 1 25778889888864 77777774
No 119
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=74.07 E-value=5.7 Score=36.80 Aligned_cols=96 Identities=10% Similarity=-0.003 Sum_probs=60.6
Q ss_pred EEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeeccccc
Q 042807 158 VFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVW 236 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw 236 (343)
+...|++.++|++|.+. +.++|=|++...+++.+++.+.-.. +.+.+++..+.... .++ ....+.+=+..+
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f~d~ii~~~~~~~--~KP----~p~~~~~a~~~l- 169 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG-YRPDYNVTTDDVPA--GRP----APWMALKNAIEL- 169 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC-CCCceEEccccCCC--CCC----CHHHHHHHHHHc-
Confidence 45679999999999864 9999999999999999998764221 11234444443211 010 000122333333
Q ss_pred ccCCCCCCCCCCCC-CCCcEEEEECCchhcccCCCCce
Q 042807 237 EISDPNCPWAKGDY-NESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 237 ~~~~p~~p~~~G~r-dl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
| . +.+++|+|.|++.-...--..|+
T Consensus 170 -----------~-~~~~~~~l~IGDs~~Di~aA~~aGi 195 (253)
T TIGR01422 170 -----------G-VYDVAACVKVGDTVPDIEEGRNAGM 195 (253)
T ss_pred -----------C-CCCchheEEECCcHHHHHHHHHCCC
Confidence 3 4 47899999999976655545554
No 120
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=74.00 E-value=5.4 Score=37.93 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=60.2
Q ss_pred EEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeeccccc
Q 042807 158 VFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVW 236 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw 236 (343)
...+|++.++|+.+.+ .+.++|-|++...++..+++.+.-.. .+..+.+.+.+. . .+.++.. +..+.
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~--~f~~i~~~d~~~--~-----~Kp~p~~---~~~~~ 167 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR--YFRWIIGGDTLP--Q-----KKPDPAA---LLFVM 167 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh--hCeEEEecCCCC--C-----CCCCcHH---HHHHH
Confidence 4468999999999975 69999999999999999988753211 122333333221 0 0111111 12222
Q ss_pred ccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 237 EISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 237 ~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
+++ | .+.+++|+|+|++.-...--.+|+
T Consensus 168 ~~~--------g-~~~~~~l~IGD~~~Di~aA~~aGi 195 (272)
T PRK13223 168 KMA--------G-VPPSQSLFVGDSRSDVLAAKAAGV 195 (272)
T ss_pred HHh--------C-CChhHEEEECCCHHHHHHHHHCCC
Confidence 222 3 788999999999887666555664
No 121
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=73.90 E-value=1.7 Score=38.25 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=12.4
Q ss_pred EEEEeCCCceeeec
Q 042807 127 LLVLDLNGLLADIV 140 (343)
Q Consensus 127 lLVLDLDeTLi~~~ 140 (343)
++++||||||+++.
T Consensus 2 ~viFDlDGTL~ds~ 15 (184)
T TIGR01993 2 VWFFDLDNTLYPHS 15 (184)
T ss_pred eEEEeCCCCCCCCc
Confidence 58999999999874
No 122
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=73.88 E-value=1.8 Score=38.90 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=13.9
Q ss_pred cEEEEeCCCceeeecC
Q 042807 126 KLLVLDLNGLLADIVS 141 (343)
Q Consensus 126 klLVLDLDeTLi~~~~ 141 (343)
+.+++||||||+++..
T Consensus 3 ~~viFDlDGTL~ds~~ 18 (221)
T TIGR02253 3 KAIFFDLDDTLIDTSG 18 (221)
T ss_pred eEEEEeCCCCCcCCCC
Confidence 5799999999999753
No 123
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=73.82 E-value=6.4 Score=36.14 Aligned_cols=94 Identities=9% Similarity=-0.039 Sum_probs=58.9
Q ss_pred eEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeecccccccccccc-ceeeeccc
Q 042807 157 AVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKA-LVFKELRK 234 (343)
Q Consensus 157 ~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~-~~vKDL~~ 234 (343)
.....|++.++|+.|.+. +-++|-|++...++..+++.+.-.. .+..+...+.+.. . +-.+ .+.+=+++
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~--~f~~i~~~~~~~~--~-----KP~p~~~~~~~~~ 163 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ--RCAVLIGGDTLAE--R-----KPHPLPLLVAAER 163 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh--cccEEEecCcCCC--C-----CCCHHHHHHHHHH
Confidence 356789999999999865 8999999999999998888753211 1233333333211 0 0011 12222233
Q ss_pred ccccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCc
Q 042807 235 VWEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYT 272 (343)
Q Consensus 235 Lw~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ng 272 (343)
+ | .+.+++|+|+|++.-...--..|
T Consensus 164 l------------~-~~p~~~l~IGDs~~Di~aA~~aG 188 (229)
T PRK13226 164 I------------G-VAPTDCVYVGDDERDILAARAAG 188 (229)
T ss_pred h------------C-CChhhEEEeCCCHHHHHHHHHCC
Confidence 3 3 78899999999987554433344
No 124
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=73.66 E-value=5.5 Score=36.19 Aligned_cols=40 Identities=18% Similarity=0.087 Sum_probs=36.7
Q ss_pred eEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 157 AVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 157 ~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
.+..||++.+||+.+.+. +.++|-|++...|++++++.+.
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~ 108 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIV 108 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhC
Confidence 467899999999999985 9999999999999999999874
No 125
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=73.30 E-value=9.3 Score=35.47 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=38.5
Q ss_pred eEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHcCC
Q 042807 157 AVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLMGD 198 (343)
Q Consensus 157 ~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ldp~ 198 (343)
-+..|||..+|.+++.++ -.++|-|||+.-|+.++++.+-+.
T Consensus 71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgk 113 (220)
T COG4359 71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGK 113 (220)
T ss_pred hcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccc
Confidence 588999999999999986 899999999999999999998753
No 126
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=73.05 E-value=2 Score=38.64 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=14.3
Q ss_pred CcEEEEeCCCceeeec
Q 042807 125 KKLLVLDLNGLLADIV 140 (343)
Q Consensus 125 KklLVLDLDeTLi~~~ 140 (343)
.+++++|+||||+++.
T Consensus 3 ~~~viFD~DGTL~ds~ 18 (214)
T PRK13288 3 INTVLFDLDGTLINTN 18 (214)
T ss_pred ccEEEEeCCCcCccCH
Confidence 4789999999999975
No 127
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=72.97 E-value=1.8 Score=39.89 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=14.3
Q ss_pred CcEEEEeCCCceeeec
Q 042807 125 KKLLVLDLNGLLADIV 140 (343)
Q Consensus 125 KklLVLDLDeTLi~~~ 140 (343)
.+.+++|+||||+++.
T Consensus 12 ~k~viFD~DGTL~Ds~ 27 (229)
T PRK13226 12 PRAVLFDLDGTLLDSA 27 (229)
T ss_pred CCEEEEcCcCccccCH
Confidence 4789999999999984
No 128
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=72.35 E-value=6 Score=36.88 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=55.9
Q ss_pred EEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcC-CCCceEEEEEecCceeeccccccccccccceeeecccc
Q 042807 158 VFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMG-DMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKV 235 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp-~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~L 235 (343)
....|++.++|+.+.+ .+.++|.|+++......+++.... +-...+..+++ +. .+.+. ....+.+=++.+
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd---~~-~g~KP----~p~~y~~i~~~l 165 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFD---TT-VGLKT----EAQSYVKIAGQL 165 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEE---eC-cccCC----CHHHHHHHHHHh
Confidence 4568999999999976 599999999999998888877531 11111333332 21 12111 001233333444
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEECCchhccc
Q 042807 236 WEISDPNCPWAKGDYNESNTVLLDDSPYKALL 267 (343)
Q Consensus 236 w~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~ 267 (343)
| .+.+++++|+|++.....
T Consensus 166 ------------g-v~p~e~lfVgDs~~Di~A 184 (220)
T TIGR01691 166 ------------G-SPPREILFLSDIINELDA 184 (220)
T ss_pred ------------C-cChhHEEEEeCCHHHHHH
Confidence 3 788999999999865433
No 129
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=72.00 E-value=7.4 Score=34.62 Aligned_cols=14 Identities=50% Similarity=0.959 Sum_probs=12.5
Q ss_pred EEEEeCCCceeeec
Q 042807 127 LLVLDLNGLLADIV 140 (343)
Q Consensus 127 lLVLDLDeTLi~~~ 140 (343)
.+++||||||+++.
T Consensus 2 ~viFD~DGTLiDs~ 15 (197)
T TIGR01548 2 ALVLDMDGVMADVS 15 (197)
T ss_pred ceEEecCceEEech
Confidence 58999999999985
No 130
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=71.73 E-value=6.1 Score=35.41 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=58.5
Q ss_pred EEeCCChHHHHHHHhcCceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeecccccc
Q 042807 158 VFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWE 237 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~ 237 (343)
.-.-|.+.++|+.+...|.++|.|-+...++...+..+- -...|..++..+... ..|+-..+|.
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~g--l~~~Fd~v~~s~~~g--------------~~KP~~~~f~ 161 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLG--LLDYFDAVFISEDVG--------------VAKPDPEIFE 161 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcC--ChhhhheEEEecccc--------------cCCCCcHHHH
Confidence 566788999999999889999999999999999988753 111234444433331 3343333332
Q ss_pred cCCCCCCCCCCCCCCCcEEEEECCchhcc
Q 042807 238 ISDPNCPWAKGDYNESNTVLLDDSPYKAL 266 (343)
Q Consensus 238 ~~~p~~p~~~G~rdl~ntIlIDDsp~~~~ 266 (343)
..- ...| -+.+++++|||+..+-.
T Consensus 162 ~~~----~~~g-~~p~~~l~VgD~~~~di 185 (229)
T COG1011 162 YAL----EKLG-VPPEEALFVGDSLENDI 185 (229)
T ss_pred HHH----HHcC-CCcceEEEECCChhhhh
Confidence 210 0003 67899999999998873
No 131
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=71.63 E-value=2.3 Score=40.46 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=14.7
Q ss_pred CCcEEEEeCCCceeeec
Q 042807 124 RKKLLVLDLNGLLADIV 140 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~ 140 (343)
-.+++++||||||+++.
T Consensus 12 ~~k~viFDlDGTL~Ds~ 28 (272)
T PRK13223 12 LPRLVMFDLDGTLVDSV 28 (272)
T ss_pred cCCEEEEcCCCccccCH
Confidence 35699999999999984
No 132
>PRK11590 hypothetical protein; Provisional
Probab=71.61 E-value=2.2 Score=38.86 Aligned_cols=38 Identities=21% Similarity=0.113 Sum_probs=32.9
Q ss_pred EeCCChHHHH-HHHh-cCceEEEEcCCchHHHHHHHHHHc
Q 042807 159 FKRPFCHDFL-RFCF-ERFDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 159 ~~RP~L~eFL-~~l~-~~yEIvIwTSa~~~ya~~il~~Ld 196 (343)
..+|+..+.| +.+. +.+.++|=|++...|+++++..+-
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 4589999999 5676 479999999999999999998753
No 133
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=70.97 E-value=2.2 Score=40.08 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=58.7
Q ss_pred EEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeeccccc
Q 042807 158 VFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVW 236 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw 236 (343)
...-|++.++|+.|.+ .+.++|=|++....+..+++.+.-.. +.+.+++..+++... ++ ....+.+=++.+
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~d~i~~~~~~~~~--KP----~p~~~~~a~~~l- 171 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQG-YRPDHVVTTDDVPAG--RP----YPWMALKNAIEL- 171 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCceEEEcCCcCCCC--CC----ChHHHHHHHHHc-
Confidence 3457999999999976 59999999999999999998653211 112334444432110 00 000122223333
Q ss_pred ccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 237 EISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 237 ~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
|..+.+++|+|.|++.-...--..|+
T Consensus 172 -----------~~~~~~e~l~IGDs~~Di~aA~~aG~ 197 (267)
T PRK13478 172 -----------GVYDVAACVKVDDTVPGIEEGLNAGM 197 (267)
T ss_pred -----------CCCCCcceEEEcCcHHHHHHHHHCCC
Confidence 31236889999999976555445554
No 134
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=70.95 E-value=2.4 Score=39.38 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=13.4
Q ss_pred cEEEEeCCCceeeec
Q 042807 126 KLLVLDLNGLLADIV 140 (343)
Q Consensus 126 klLVLDLDeTLi~~~ 140 (343)
+++++|+||||+++.
T Consensus 3 k~viFD~DGTLiDs~ 17 (253)
T TIGR01422 3 EAVIFDWAGTTVDFG 17 (253)
T ss_pred eEEEEeCCCCeecCC
Confidence 589999999999974
No 135
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=70.94 E-value=3.9 Score=35.50 Aligned_cols=15 Identities=27% Similarity=0.758 Sum_probs=13.5
Q ss_pred cEEEEeCCCceeeec
Q 042807 126 KLLVLDLNGLLADIV 140 (343)
Q Consensus 126 klLVLDLDeTLi~~~ 140 (343)
+++++|+||||+++.
T Consensus 2 ~~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 2 KAVIFDMDGVIVDTA 16 (185)
T ss_pred CeEEEcCCCcccCCh
Confidence 578999999999985
No 136
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=70.81 E-value=11 Score=35.45 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=13.8
Q ss_pred CcEEEEeCCCceeeec
Q 042807 125 KKLLVLDLNGLLADIV 140 (343)
Q Consensus 125 KklLVLDLDeTLi~~~ 140 (343)
-++++||+||||+++.
T Consensus 4 ~k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 4 IQAVIFDWAGTTVDFG 19 (267)
T ss_pred eEEEEEcCCCCeecCC
Confidence 3689999999999974
No 137
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=70.66 E-value=2.5 Score=37.93 Aligned_cols=95 Identities=12% Similarity=-0.013 Sum_probs=52.5
Q ss_pred EEeCCChHHHHHHHhc-CceEEEEcCCchHH--HHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeeccc
Q 042807 158 VFKRPFCHDFLRFCFE-RFDVGVWSSRTQKN--VERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRK 234 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~y--a~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~ 234 (343)
+...|++.++|+.|.+ .+.++|-|++...+ ....+.... -...+..++..+.+.. .++ ....+.+=+++
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~--l~~~fd~v~~s~~~~~--~KP----~p~~~~~~~~~ 164 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGD--IMALFDAVVESCLEGL--RKP----DPRIYQLMLER 164 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhh--hHhhCCEEEEeeecCC--CCC----CHHHHHHHHHH
Confidence 4568999999999986 59999999987654 222221110 0011233332222210 000 00012232333
Q ss_pred ccccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 235 VWEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 235 Lw~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
+ | .+.+++|+|||++.....--..|+
T Consensus 165 ~------------g-~~~~~~l~i~D~~~di~aA~~aG~ 190 (211)
T TIGR02247 165 L------------G-VAPEECVFLDDLGSNLKPAAALGI 190 (211)
T ss_pred c------------C-CCHHHeEEEcCCHHHHHHHHHcCC
Confidence 3 4 688999999999887655445554
No 138
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=70.39 E-value=7.2 Score=35.44 Aligned_cols=59 Identities=25% Similarity=0.195 Sum_probs=46.7
Q ss_pred CCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 122 RLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 122 ~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
..+-+.+|+|||+|||--... ..=|-+.+-+..+.+. --++|.|-.++.=+...+..++
T Consensus 25 ~~Gikgvi~DlDNTLv~wd~~----------------~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~ 84 (175)
T COG2179 25 AHGIKGVILDLDNTLVPWDNP----------------DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLG 84 (175)
T ss_pred HcCCcEEEEeccCceecccCC----------------CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcC
Confidence 457899999999999985321 1235677778888876 8899999999999998888876
No 139
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=70.38 E-value=2.1 Score=39.92 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=14.2
Q ss_pred CcEEEEeCCCceeeec
Q 042807 125 KKLLVLDLNGLLADIV 140 (343)
Q Consensus 125 KklLVLDLDeTLi~~~ 140 (343)
-+.++|||||||+++.
T Consensus 22 ~k~viFDlDGTLiDs~ 37 (248)
T PLN02770 22 LEAVLFDVDGTLCDSD 37 (248)
T ss_pred cCEEEEcCCCccCcCH
Confidence 4689999999999975
No 140
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=70.34 E-value=2.5 Score=39.00 Aligned_cols=16 Identities=31% Similarity=0.628 Sum_probs=14.2
Q ss_pred CCcEEEEeCCCceeee
Q 042807 124 RKKLLVLDLNGLLADI 139 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~ 139 (343)
.-+.++|||||||+++
T Consensus 9 ~~k~vIFDlDGTL~d~ 24 (224)
T PRK14988 9 DVDTVLLDMDGTLLDL 24 (224)
T ss_pred cCCEEEEcCCCCccch
Confidence 4678999999999995
No 141
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=70.28 E-value=2.5 Score=40.24 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=15.3
Q ss_pred CCCcEEEEeCCCceeeec
Q 042807 123 LRKKLLVLDLNGLLADIV 140 (343)
Q Consensus 123 ~~KklLVLDLDeTLi~~~ 140 (343)
..-+.++|||||||+++.
T Consensus 22 ~~~k~vIFDlDGTLvDS~ 39 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDD 39 (260)
T ss_pred CCceEEEEeCCCceeCCc
Confidence 356789999999999984
No 142
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=70.11 E-value=2.3 Score=40.77 Aligned_cols=91 Identities=12% Similarity=0.034 Sum_probs=56.8
Q ss_pred EeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeecccccc
Q 042807 159 FKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWE 237 (343)
Q Consensus 159 ~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~ 237 (343)
..-|++.++|+.|.+ .+.++|-|++...+++.+++.+.-.. .+..+...+.. ..+. ..+..+.+
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~--~F~~vi~~~~~----------~~k~---~~~~~~l~ 206 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS--LFSVVQAGTPI----------LSKR---RALSQLVA 206 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh--heEEEEecCCC----------CCCH---HHHHHHHH
Confidence 446999999999985 58999999999999999998864221 23333221110 0011 11222222
Q ss_pred cCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 238 ISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 238 ~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
++ +.+.+++++|+|++.-...--..|+
T Consensus 207 ~~---------~~~p~~~l~IGDs~~Di~aA~~AG~ 233 (273)
T PRK13225 207 RE---------GWQPAAVMYVGDETRDVEAARQVGL 233 (273)
T ss_pred Hh---------CcChhHEEEECCCHHHHHHHHHCCC
Confidence 22 2577899999999875544434444
No 143
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=69.78 E-value=6.6 Score=35.40 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=41.3
Q ss_pred CCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcCc---eEEEEcCCc-------hHHHHHH
Q 042807 122 RLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFERF---DVGVWSSRT-------QKNVERV 191 (343)
Q Consensus 122 ~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~y---EIvIwTSa~-------~~ya~~i 191 (343)
..+=+.||+|+|+||..... -..-|-+.+.++.|.+.| .|+|.|-+. ..-|+.+
T Consensus 38 ~~Gik~li~DkDNTL~~~~~----------------~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~ 101 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPYE----------------DEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEAL 101 (168)
T ss_pred hcCceEEEEcCCCCCCCCCc----------------CcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHH
Confidence 45678999999999987532 234567788888998765 389999873 4555555
Q ss_pred HHHH
Q 042807 192 VDFL 195 (343)
Q Consensus 192 l~~L 195 (343)
-+.+
T Consensus 102 ~~~l 105 (168)
T PF09419_consen 102 EKAL 105 (168)
T ss_pred HHhh
Confidence 5554
No 144
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=69.49 E-value=2 Score=36.34 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=12.4
Q ss_pred EEEEeCCCceeeec
Q 042807 127 LLVLDLNGLLADIV 140 (343)
Q Consensus 127 lLVLDLDeTLi~~~ 140 (343)
++++|+||||+++.
T Consensus 1 ~iifD~DGTL~d~~ 14 (154)
T TIGR01549 1 AILFDIDGTLVDSS 14 (154)
T ss_pred CeEecCCCcccccH
Confidence 47999999999985
No 145
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=69.48 E-value=2.2 Score=39.56 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=22.7
Q ss_pred CCChHHHHHHHhcCceEEEEcCCchH
Q 042807 161 RPFCHDFLRFCFERFDVGVWSSRTQK 186 (343)
Q Consensus 161 RP~L~eFL~~l~~~yEIvIwTSa~~~ 186 (343)
-|++.++|+.|.+.|-++|-|++...
T Consensus 115 ~~gv~~~L~~L~~~~~l~i~Tn~~~~ 140 (238)
T PRK10748 115 PQATHDTLKQLAKKWPLVAITNGNAQ 140 (238)
T ss_pred CccHHHHHHHHHcCCCEEEEECCCch
Confidence 38899999999988999999998765
No 146
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=69.22 E-value=3 Score=38.22 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=60.8
Q ss_pred EEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeeccccc
Q 042807 158 VFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVW 236 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw 236 (343)
...=|++.+.|..+.+ .|.++|-|+.....++.+++.+.-.. .|..+...+.+. ..|+ .-..|..+.
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~--~F~~i~g~~~~~---------~~KP-~P~~l~~~~ 155 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD--YFDVIVGGDDVP---------PPKP-DPEPLLLLL 155 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc--ccceEEcCCCCC---------CCCc-CHHHHHHHH
Confidence 3568999999999997 58999999999999999999865332 233333322221 1111 122333333
Q ss_pred ccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCc
Q 042807 237 EISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYT 272 (343)
Q Consensus 237 ~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ng 272 (343)
+++ | .+.+++|||=|+..-...--..|
T Consensus 156 ~~~--------~-~~~~~~l~VGDs~~Di~aA~~Ag 182 (220)
T COG0546 156 EKL--------G-LDPEEALMVGDSLNDILAAKAAG 182 (220)
T ss_pred HHh--------C-CChhheEEECCCHHHHHHHHHcC
Confidence 332 2 44569999999988766655554
No 147
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=68.99 E-value=2.4 Score=37.89 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.8
Q ss_pred cEEEEeCCCceeeecC
Q 042807 126 KLLVLDLNGLLADIVS 141 (343)
Q Consensus 126 klLVLDLDeTLi~~~~ 141 (343)
+++++|+||||+++..
T Consensus 2 k~viFD~DGTL~d~~~ 17 (224)
T TIGR02254 2 KTLLFDLDDTILDFQA 17 (224)
T ss_pred CEEEEcCcCcccccch
Confidence 5799999999999753
No 148
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=68.89 E-value=4.3 Score=36.27 Aligned_cols=95 Identities=15% Similarity=0.060 Sum_probs=56.8
Q ss_pred EEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeecccccccccccc-ceeeecccc
Q 042807 158 VFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKA-LVFKELRKV 235 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~-~~vKDL~~L 235 (343)
...+|++.++|+.+.+ .+.++|-|++....+..++..... -...+..++..+.+... +-.+ .+..=++.+
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~-l~~~fd~v~~s~~~~~~-------KP~p~~~~~~~~~~ 154 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPE-VRAAADHIYLSQDLGMR-------KPEARIYQHVLQAE 154 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchh-HHHhcCEEEEecccCCC-------CCCHHHHHHHHHHc
Confidence 3468999999999986 599999999988776655432111 00113334433333210 1111 122223333
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 236 WEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 236 w~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
| .+.+++|+|||++.....--..|+
T Consensus 155 ------------~-~~p~~~l~vgD~~~di~aA~~aG~ 179 (199)
T PRK09456 155 ------------G-FSAADAVFFDDNADNIEAANALGI 179 (199)
T ss_pred ------------C-CChhHeEEeCCCHHHHHHHHHcCC
Confidence 3 789999999999987655445554
No 149
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=68.33 E-value=2.6 Score=37.42 Aligned_cols=15 Identities=47% Similarity=0.651 Sum_probs=13.3
Q ss_pred cEEEEeCCCceeeec
Q 042807 126 KLLVLDLNGLLADIV 140 (343)
Q Consensus 126 klLVLDLDeTLi~~~ 140 (343)
+.++||+||||++..
T Consensus 2 k~viFD~dgTLiD~~ 16 (198)
T TIGR01428 2 KALVFDVYGTLFDVH 16 (198)
T ss_pred cEEEEeCCCcCccHH
Confidence 479999999999975
No 150
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=68.28 E-value=2.8 Score=36.81 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=34.9
Q ss_pred EEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHc
Q 042807 158 VFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ld 196 (343)
+..+|++.++|+.+.+ .+.++|-|++...+++.+++.+.
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g 118 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLN 118 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhC
Confidence 4568999999999986 59999999999999999998874
No 151
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=67.96 E-value=2.9 Score=40.21 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=15.0
Q ss_pred CCcEEEEeCCCceeeec
Q 042807 124 RKKLLVLDLNGLLADIV 140 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~ 140 (343)
.-+++|+||||||+++.
T Consensus 39 ~~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 39 LPEALLFDCDGVLVETE 55 (286)
T ss_pred CCcEEEEeCceeEEccc
Confidence 45789999999999986
No 152
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=67.67 E-value=2 Score=38.37 Aligned_cols=13 Identities=46% Similarity=0.861 Sum_probs=11.7
Q ss_pred EEEeCCCceeeec
Q 042807 128 LVLDLNGLLADIV 140 (343)
Q Consensus 128 LVLDLDeTLi~~~ 140 (343)
+++||||||+++.
T Consensus 1 iiFDlDGTL~Ds~ 13 (205)
T TIGR01454 1 VVFDLDGVLVDSF 13 (205)
T ss_pred CeecCcCccccCH
Confidence 5899999999985
No 153
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=67.12 E-value=2.4 Score=36.79 Aligned_cols=85 Identities=13% Similarity=0.001 Sum_probs=48.5
Q ss_pred EeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeecccccccccccc-ceeeeccccc
Q 042807 159 FKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKA-LVFKELRKVW 236 (343)
Q Consensus 159 ~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~-~~vKDL~~Lw 236 (343)
...|++.++|+.|.+ .+.++|=|++. .+..+++.+.=.. .+.+++..+.- +. .+..+ .+.+=++.+
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~--~f~~~~~~~~~---~~----~kp~p~~~~~~~~~~- 154 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLID--YFDAIVDPAEI---KK----GKPDPEIFLAAAEGL- 154 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHh--hCcEEEehhhc---CC----CCCChHHHHHHHHHc-
Confidence 457999999999985 48898888753 4566666643111 23333332211 00 01111 122223333
Q ss_pred ccCCCCCCCCCCCCCCCcEEEEECCchhccc
Q 042807 237 EISDPNCPWAKGDYNESNTVLLDDSPYKALL 267 (343)
Q Consensus 237 ~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~ 267 (343)
| .+.+++|+|+|++..+..
T Consensus 155 -----------~-~~~~~~v~vgD~~~di~a 173 (185)
T TIGR01990 155 -----------G-VSPSECIGIEDAQAGIEA 173 (185)
T ss_pred -----------C-CCHHHeEEEecCHHHHHH
Confidence 3 678999999999865543
No 154
>PRK09449 dUMP phosphatase; Provisional
Probab=66.81 E-value=2.7 Score=37.96 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=12.5
Q ss_pred cEEEEeCCCceeee
Q 042807 126 KLLVLDLNGLLADI 139 (343)
Q Consensus 126 klLVLDLDeTLi~~ 139 (343)
+++++||||||++.
T Consensus 4 k~iiFDlDGTLid~ 17 (224)
T PRK09449 4 DWILFDADETLFHF 17 (224)
T ss_pred cEEEEcCCCchhcc
Confidence 68999999999974
No 155
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=65.75 E-value=2.9 Score=36.14 Aligned_cols=80 Identities=10% Similarity=0.064 Sum_probs=47.9
Q ss_pred EEeCCChHHHHHHHhcCceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeecccccc
Q 042807 158 VFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWE 237 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~ 237 (343)
+...|++.++|+. ++|-|++...++..+++.+.-.. .+..++..+.+.. .++ ....+.+=++++
T Consensus 89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~~--~fd~v~~~~~~~~--~KP----~p~~f~~~~~~~-- 152 (175)
T TIGR01493 89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLPW--YFDRAFSVDTVRA--YKP----DPVVYELVFDTV-- 152 (175)
T ss_pred CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCHH--HHhhhccHhhcCC--CCC----CHHHHHHHHHHH--
Confidence 3468899999983 78999999999999998753111 1222333332211 000 000123333444
Q ss_pred cCCCCCCCCCCCCCCCcEEEEECCchh
Q 042807 238 ISDPNCPWAKGDYNESNTVLLDDSPYK 264 (343)
Q Consensus 238 ~~~p~~p~~~G~rdl~ntIlIDDsp~~ 264 (343)
| .+.+.+|+|+|++..
T Consensus 153 ----------~-~~p~~~l~vgD~~~D 168 (175)
T TIGR01493 153 ----------G-LPPDRVLMVAAHQWD 168 (175)
T ss_pred ----------C-CCHHHeEeEecChhh
Confidence 3 788999999999743
No 156
>PLN02940 riboflavin kinase
Probab=65.74 E-value=6.8 Score=39.40 Aligned_cols=96 Identities=11% Similarity=0.123 Sum_probs=60.2
Q ss_pred EEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeeccccc
Q 042807 158 VFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVW 236 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw 236 (343)
+...|++.++|++|.+. +.++|=|++...++..+++...+- ...+.+++..+++... +. ....+..=++.+
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl-~~~Fd~ii~~d~v~~~--KP----~p~~~~~a~~~l- 163 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGW-KESFSVIVGGDEVEKG--KP----SPDIFLEAAKRL- 163 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccCh-HhhCCEEEehhhcCCC--CC----CHHHHHHHHHHc-
Confidence 34579999999999765 999999999999999888732111 1123455555554211 00 000122333333
Q ss_pred ccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 237 EISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 237 ~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
| .+.+++|+|+|++.....--..|+
T Consensus 164 -----------g-v~p~~~l~VGDs~~Di~aA~~aGi 188 (382)
T PLN02940 164 -----------N-VEPSNCLVIEDSLPGVMAGKAAGM 188 (382)
T ss_pred -----------C-CChhHEEEEeCCHHHHHHHHHcCC
Confidence 3 678999999999976644444443
No 157
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=65.23 E-value=3.8 Score=36.73 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=13.1
Q ss_pred cEEEEeCCCceeeec
Q 042807 126 KLLVLDLNGLLADIV 140 (343)
Q Consensus 126 klLVLDLDeTLi~~~ 140 (343)
+.+++||||||+++.
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 579999999999863
No 158
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=65.02 E-value=3.2 Score=37.51 Aligned_cols=92 Identities=14% Similarity=0.005 Sum_probs=55.2
Q ss_pred EEeCCChHHHHHHHhcCceEEEEcCCchHHHHHHHHHHcCCCCceEE-EEEecCceeecccccccccccc-ceeeecccc
Q 042807 158 VFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFLMGDMKHKLL-FCWDLSYCTATSFKALENKYKA-LVFKELRKV 235 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~-~vl~Rd~C~~~~~~~~e~~~k~-~~vKDL~~L 235 (343)
....|++.++|+.+. +-++|-|++...+++.+++...-.. .+. .+...++.. .. +-.+ .+..=++.+
T Consensus 87 ~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~--~F~~~v~~~~~~~--~~-----KP~p~~~~~a~~~~ 155 (221)
T PRK10563 87 LEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH--YFPDKLFSGYDIQ--RW-----KPDPALMFHAAEAM 155 (221)
T ss_pred CCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH--hCcceEeeHHhcC--CC-----CCChHHHHHHHHHc
Confidence 456789999999993 8999999999999999887642111 121 222222221 00 0000 122222333
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 236 WEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 236 w~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
| .+.+++|+|+|++.....--..|+
T Consensus 156 ------------~-~~p~~~l~igDs~~di~aA~~aG~ 180 (221)
T PRK10563 156 ------------N-VNVENCILVDDSSAGAQSGIAAGM 180 (221)
T ss_pred ------------C-CCHHHeEEEeCcHhhHHHHHHCCC
Confidence 3 678899999999976544334443
No 159
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=64.95 E-value=3.3 Score=37.13 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=13.9
Q ss_pred CcEEEEeCCCceeeec
Q 042807 125 KKLLVLDLNGLLADIV 140 (343)
Q Consensus 125 KklLVLDLDeTLi~~~ 140 (343)
-+++++|+||||+++.
T Consensus 6 ~~~iiFD~DGTL~d~~ 21 (226)
T PRK13222 6 IRAVAFDLDGTLVDSA 21 (226)
T ss_pred CcEEEEcCCcccccCH
Confidence 4689999999999874
No 160
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=64.64 E-value=15 Score=32.83 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=28.6
Q ss_pred EeCCChHHHHHHHhcCceEEEEcCCch--HHHHHHHHHH
Q 042807 159 FKRPFCHDFLRFCFERFDVGVWSSRTQ--KNVERVVDFL 195 (343)
Q Consensus 159 ~~RP~L~eFL~~l~~~yEIvIwTSa~~--~ya~~il~~L 195 (343)
-.-||.++-++.+-++|+|.|=||++- .-.+...+-|
T Consensus 68 ~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl 106 (180)
T COG4502 68 GVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWL 106 (180)
T ss_pred CccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHH
Confidence 346899999999999999999999944 4445555544
No 161
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=64.40 E-value=8.6 Score=34.10 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=13.1
Q ss_pred cEEEEeCCCceeeec
Q 042807 126 KLLVLDLNGLLADIV 140 (343)
Q Consensus 126 klLVLDLDeTLi~~~ 140 (343)
+++++||||||+.+.
T Consensus 1 k~viFDlDGTL~d~~ 15 (203)
T TIGR02252 1 KLITFDAVGTLLALK 15 (203)
T ss_pred CeEEEecCCceeeeC
Confidence 478999999999974
No 162
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=64.30 E-value=11 Score=36.08 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=14.9
Q ss_pred CCcEEEEeCCCceeeec
Q 042807 124 RKKLLVLDLNGLLADIV 140 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~ 140 (343)
.-+.+++||||||+++.
T Consensus 61 ~~k~vIFDlDGTLiDS~ 77 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSL 77 (273)
T ss_pred hcCEEEECCcCccccCH
Confidence 46789999999999985
No 163
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=64.11 E-value=10 Score=36.01 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=63.8
Q ss_pred EEeCCChHHHHHHHhcCceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeecccccc
Q 042807 158 VFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVWE 237 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw~ 237 (343)
+..=|-|.+||-.|.+.+ .+|||-|.+.-|..+++.|- |.-|+..=-|...- ....+...+|+...-++
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LG------ieDcFegii~~e~~----np~~~~~vcKP~~~afE 167 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLG------IEDCFEGIICFETL----NPIEKTVVCKPSEEAFE 167 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhC------hHHhccceeEeecc----CCCCCceeecCCHHHHH
Confidence 455677899999999888 99999999999999999863 11122222232111 11123468898887766
Q ss_pred cCCCCCCCCCCCCCCCcEEEEECCchhcccCC
Q 042807 238 ISDPNCPWAKGDYNESNTVLLDDSPYKALLNP 269 (343)
Q Consensus 238 ~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP 269 (343)
+--. ..|--+..||+.+|||..+...--
T Consensus 168 ~a~k----~agi~~p~~t~FfDDS~~NI~~ak 195 (244)
T KOG3109|consen 168 KAMK----VAGIDSPRNTYFFDDSERNIQTAK 195 (244)
T ss_pred HHHH----HhCCCCcCceEEEcCchhhHHHHH
Confidence 4210 014234999999999998765443
No 164
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=64.01 E-value=12 Score=33.56 Aligned_cols=15 Identities=40% Similarity=0.527 Sum_probs=13.4
Q ss_pred cEEEEeCCCceeeec
Q 042807 126 KLLVLDLNGLLADIV 140 (343)
Q Consensus 126 klLVLDLDeTLi~~~ 140 (343)
+++++|+||||+++.
T Consensus 2 k~iiFD~DGTL~ds~ 16 (220)
T TIGR03351 2 SLVVLDMAGTTVDED 16 (220)
T ss_pred cEEEEecCCCeeccC
Confidence 689999999999975
No 165
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=63.90 E-value=2.7 Score=37.47 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=11.5
Q ss_pred EEEeCCCceeeec
Q 042807 128 LVLDLNGLLADIV 140 (343)
Q Consensus 128 LVLDLDeTLi~~~ 140 (343)
+++|+||||+++.
T Consensus 1 viFD~DGTL~Ds~ 13 (213)
T TIGR01449 1 VLFDLDGTLVDSA 13 (213)
T ss_pred CeecCCCccccCH
Confidence 5899999999974
No 166
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=63.34 E-value=12 Score=36.40 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=45.8
Q ss_pred CCcEEEEeCCCceeeecCCC-CC--C-CCCC---ce---ecceeEEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHH
Q 042807 124 RKKLLVLDLNGLLADIVSPP-PK--D-CKAD---KK---IARHAVFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVV 192 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~~~~-~~--~-~~~D---f~---~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il 192 (343)
++..+|||+|||++...... .. + ...| +. +.....-.=|+.-+|++++.+ .+.|++-|...+..-+.=+
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~ 179 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTE 179 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHH
Confidence 67899999999999643110 00 0 1111 11 111111224688899999976 5999999999887766666
Q ss_pred HHHcC
Q 042807 193 DFLMG 197 (343)
Q Consensus 193 ~~Ldp 197 (343)
+.|..
T Consensus 180 ~NL~k 184 (275)
T TIGR01680 180 ANLKK 184 (275)
T ss_pred HHHHH
Confidence 66643
No 167
>PLN02382 probable sucrose-phosphatase
Probab=63.18 E-value=18 Score=36.98 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.5
Q ss_pred CCCcEEEEeCCCceeee
Q 042807 123 LRKKLLVLDLNGLLADI 139 (343)
Q Consensus 123 ~~KklLVLDLDeTLi~~ 139 (343)
+.+.+||.||||||+.+
T Consensus 7 ~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 7 SPRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCCEEEEEcCCCcCcCC
Confidence 34789999999999975
No 168
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=62.85 E-value=13 Score=32.44 Aligned_cols=16 Identities=44% Similarity=0.899 Sum_probs=13.8
Q ss_pred CcEEEEeCCCceeeec
Q 042807 125 KKLLVLDLNGLLADIV 140 (343)
Q Consensus 125 KklLVLDLDeTLi~~~ 140 (343)
.+++|+|+||||+...
T Consensus 4 ~k~viFD~DGTLid~~ 19 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVM 19 (201)
T ss_pred ceEEEEeCCCCCcCCc
Confidence 4689999999999854
No 169
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=62.78 E-value=3.8 Score=37.13 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=14.7
Q ss_pred CCcEEEEeCCCceeeec
Q 042807 124 RKKLLVLDLNGLLADIV 140 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~ 140 (343)
.-+.++||+||||+++.
T Consensus 6 ~~k~iiFD~DGTL~d~~ 22 (222)
T PRK10826 6 QILAAIFDMDGLLIDSE 22 (222)
T ss_pred cCcEEEEcCCCCCCcCH
Confidence 35789999999999974
No 170
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=62.32 E-value=14 Score=31.60 Aligned_cols=39 Identities=28% Similarity=0.268 Sum_probs=34.6
Q ss_pred eEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHH
Q 042807 157 AVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFL 195 (343)
Q Consensus 157 ~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~L 195 (343)
.+..+|++.++|+.+.+. +.++|-|++...+++++++.+
T Consensus 71 ~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~ 110 (177)
T TIGR01488 71 QVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKL 110 (177)
T ss_pred cCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 345789999999999764 899999999999999999986
No 171
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=62.27 E-value=3.7 Score=34.37 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=11.7
Q ss_pred EEEeCCCceeeec
Q 042807 128 LVLDLNGLLADIV 140 (343)
Q Consensus 128 LVLDLDeTLi~~~ 140 (343)
++||+||||++..
T Consensus 1 iifD~dgtL~d~~ 13 (176)
T PF13419_consen 1 IIFDLDGTLVDTD 13 (176)
T ss_dssp EEEESBTTTEEHH
T ss_pred cEEECCCCcEeCH
Confidence 6899999999975
No 172
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=62.13 E-value=4.5 Score=36.38 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=15.4
Q ss_pred CCCcEEEEeCCCceeeec
Q 042807 123 LRKKLLVLDLNGLLADIV 140 (343)
Q Consensus 123 ~~KklLVLDLDeTLi~~~ 140 (343)
..++.+++|+||||++..
T Consensus 12 ~~~k~iiFD~DGTL~~~~ 29 (219)
T TIGR00338 12 RSKKLVVFDMDSTLINAE 29 (219)
T ss_pred ccCCEEEEeCcccCCCch
Confidence 456799999999999974
No 173
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=60.76 E-value=5 Score=34.73 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=34.8
Q ss_pred eEEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHH
Q 042807 157 AVFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFL 195 (343)
Q Consensus 157 ~v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~L 195 (343)
.+..+|++.++|+.+.+ .+.++|-|++...+++.+++.+
T Consensus 70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~ 109 (188)
T TIGR01489 70 SAPIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGI 109 (188)
T ss_pred hCCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHc
Confidence 35789999999999976 4999999999999999999875
No 174
>PHA02597 30.2 hypothetical protein; Provisional
Probab=60.41 E-value=9.9 Score=33.68 Aligned_cols=22 Identities=9% Similarity=-0.019 Sum_probs=17.1
Q ss_pred CCcEEEEECCchhcccCCCC--ce
Q 042807 252 ESNTVLLDDSPYKALLNPPY--TA 273 (343)
Q Consensus 252 l~ntIlIDDsp~~~~~qP~N--gi 273 (343)
.+.+|+|||++.....--.. |+
T Consensus 145 ~~~~v~vgDs~~di~aA~~a~~Gi 168 (197)
T PHA02597 145 DRVVCFVDDLAHNLDAAHEALSQL 168 (197)
T ss_pred CCcEEEeCCCHHHHHHHHHHHcCC
Confidence 56799999999987665555 65
No 175
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=59.80 E-value=7.4 Score=35.10 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.5
Q ss_pred CcEEEEeCCCceeeec
Q 042807 125 KKLLVLDLNGLLADIV 140 (343)
Q Consensus 125 KklLVLDLDeTLi~~~ 140 (343)
-+++++|+||||+.+.
T Consensus 4 ~~~viFD~DGTL~d~~ 19 (221)
T PRK10563 4 IEAVFFDCDGTLVDSE 19 (221)
T ss_pred CCEEEECCCCCCCCCh
Confidence 4688999999999974
No 176
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=59.56 E-value=16 Score=37.32 Aligned_cols=92 Identities=9% Similarity=0.086 Sum_probs=58.2
Q ss_pred EEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeeccccc
Q 042807 158 VFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKVW 236 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~Lw 236 (343)
+...|++.++|+++.+ .+.++|-|++...++..+++.+.=.. .+.+++..+... .+.++.. +...-
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~--~f~~i~~~d~v~--------~~~kP~~---~~~al 395 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ--WVTETFSIEQIN--------SLNKSDL---VKSIL 395 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh--hcceeEecCCCC--------CCCCcHH---HHHHH
Confidence 3457999999999975 59999999999999999999864221 233344333221 0111111 11111
Q ss_pred ccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 237 EISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 237 ~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
+ ..+.+++|+|.|++.-...--..|+
T Consensus 396 ~-----------~l~~~~~v~VGDs~~Di~aAk~AG~ 421 (459)
T PRK06698 396 N-----------KYDIKEAAVVGDRLSDINAAKDNGL 421 (459)
T ss_pred H-----------hcCcceEEEEeCCHHHHHHHHHCCC
Confidence 1 2356789999999976655445554
No 177
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=59.42 E-value=15 Score=33.53 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=36.0
Q ss_pred EEeCCChHHHHHHHhcCceEEEEcCCchHHHHHHHHHHc
Q 042807 158 VFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il~~Ld 196 (343)
+..+|+..+||+.+.+.+.++|=|++...+++++++.+.
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lg 105 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLG 105 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcC
Confidence 467999999999999889999999999999999999864
No 178
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=59.07 E-value=16 Score=35.41 Aligned_cols=54 Identities=19% Similarity=0.127 Sum_probs=39.7
Q ss_pred CCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHH
Q 042807 124 RKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFL 195 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~L 195 (343)
......+||||||++-.. .=|+..+||+.+.+. --+++-|-.+.+-.+.+.++|
T Consensus 7 ~y~~~l~DlDGvl~~G~~------------------~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L 61 (269)
T COG0647 7 KYDGFLFDLDGVLYRGNE------------------AIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARL 61 (269)
T ss_pred hcCEEEEcCcCceEeCCc------------------cCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 456789999999998542 237899999999976 777777777666555555544
No 179
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=58.71 E-value=4.8 Score=34.61 Aligned_cols=14 Identities=43% Similarity=0.840 Sum_probs=12.3
Q ss_pred EEEeCCCceeeecC
Q 042807 128 LVLDLNGLLADIVS 141 (343)
Q Consensus 128 LVLDLDeTLi~~~~ 141 (343)
+++||||||++..+
T Consensus 2 vlFDlDgtLv~~~~ 15 (183)
T TIGR01509 2 ILFDLDGVLVDTSS 15 (183)
T ss_pred eeeccCCceechHH
Confidence 79999999999853
No 180
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=57.94 E-value=5.2 Score=36.90 Aligned_cols=88 Identities=18% Similarity=0.115 Sum_probs=61.8
Q ss_pred eEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeeccccccccccccceeeecccc
Q 042807 157 AVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKALVFKELRKV 235 (343)
Q Consensus 157 ~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~~~vKDL~~L 235 (343)
.+...||+.+||+.|... .-+++=|++....+..+++.+.-.. .+..+.+.++... .++ .-..|.+=.++|
T Consensus 84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~--~f~~~v~~~dv~~--~KP----~Pd~yL~Aa~~L 155 (221)
T COG0637 84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD--YFDVIVTADDVAR--GKP----APDIYLLAAERL 155 (221)
T ss_pred CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh--hcchhccHHHHhc--CCC----CCHHHHHHHHHc
Confidence 457899999999999987 9999999999999999998754221 2333344444431 111 011355666666
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEECCchhc
Q 042807 236 WEISDPNCPWAKGDYNESNTVLLDDSPYKA 265 (343)
Q Consensus 236 w~~~~p~~p~~~G~rdl~ntIlIDDsp~~~ 265 (343)
| .+..+.|.|+|++.-.
T Consensus 156 ------------g-v~P~~CvviEDs~~Gi 172 (221)
T COG0637 156 ------------G-VDPEECVVVEDSPAGI 172 (221)
T ss_pred ------------C-CChHHeEEEecchhHH
Confidence 5 8999999999998644
No 181
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=57.22 E-value=5.6 Score=37.26 Aligned_cols=73 Identities=14% Similarity=0.053 Sum_probs=43.6
Q ss_pred CCCcEEEEeCCCceeeecCCC----CCC---CCCCc---eecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHH
Q 042807 123 LRKKLLVLDLNGLLADIVSPP----PKD---CKADK---KIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERV 191 (343)
Q Consensus 123 ~~KklLVLDLDeTLi~~~~~~----~~~---~~~Df---~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~i 191 (343)
.+++.+|||||||++...... ..+ ...++ ...... ..=|+.-+|++++.+. +.|++=|...+..-+.-
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~-~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T 148 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKA-PAIPGALELYNYARSRGVKVFFITGRPESQREAT 148 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGG-EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHH
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccC-cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHH
Confidence 578899999999999653210 000 01111 111122 4457788999999986 77777776666655555
Q ss_pred HHHHc
Q 042807 192 VDFLM 196 (343)
Q Consensus 192 l~~Ld 196 (343)
++.|.
T Consensus 149 ~~nL~ 153 (229)
T PF03767_consen 149 EKNLK 153 (229)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 182
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=57.02 E-value=23 Score=31.63 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=39.5
Q ss_pred EEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHH
Q 042807 127 LLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFL 195 (343)
Q Consensus 127 lLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~L 195 (343)
.+|-|+||||--+--... - ....+.- +.|||+.++.+.+.++ |.++-=||..-..+...-+.|
T Consensus 1 VVvsDIDGTiT~SD~~G~---i--~~~~G~d-~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L 64 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGH---I--LPILGKD-WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWL 64 (157)
T ss_pred CEEEeccCCcCccchhhh---h--hhccCch-hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHH
Confidence 378999999988631000 0 0011222 8899999999999987 776666666544444444444
No 183
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=56.35 E-value=9 Score=35.37 Aligned_cols=51 Identities=33% Similarity=0.465 Sum_probs=32.2
Q ss_pred EEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcCce--EEEEcCCchHHHHHH
Q 042807 129 VLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFERFD--VGVWSSRTQKNVERV 191 (343)
Q Consensus 129 VLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~yE--IvIwTSa~~~ya~~i 191 (343)
.||.||||.-....+ .....-|.+.+.|+.|+.... |+|-|.......+.+
T Consensus 1 ~lDyDGTL~p~~~~p------------~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~ 53 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDP------------DAAVPPPELRELLRALAADPNNTVAIVSGRSLDDLERF 53 (235)
T ss_dssp EEE-TTTSS---S-G------------GG----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH
T ss_pred CcccCCccCCCCCCc------------cccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHh
Confidence 489999999876432 246777899999999999877 999998888774443
No 184
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=54.61 E-value=39 Score=30.19 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=43.4
Q ss_pred CCcEEEEeCCCceeeecCCC-CCCCCCCceecceeEEeCCChHHHHHHHhcCceEEEEcCCchHHHHHHHHHHc
Q 042807 124 RKKLLVLDLNGLLADIVSPP-PKDCKADKKIARHAVFKRPFCHDFLRFCFERFDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~~~~-~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~yEIvIwTSa~~~ya~~il~~Ld 196 (343)
.=+++|+|+||+|-+-+-.. +.+. ....+..|-+.--.+=. ...+.++|-|+....++..+++.+.
T Consensus 6 ~i~~~v~d~dGv~tdg~~~~~~~g~------~~~~~~~~D~~~~~~L~-~~Gi~laIiT~k~~~~~~~~l~~lg 72 (169)
T TIGR02726 6 NIKLVILDVDGVMTDGRIVINDEGI------ESRNFDIKDGMGVIVLQ-LCGIDVAIITSKKSGAVRHRAEELK 72 (169)
T ss_pred cCeEEEEeCceeeECCeEEEcCCCc------EEEEEecchHHHHHHHH-HCCCEEEEEECCCcHHHHHHHHHCC
Confidence 36899999999998853111 1110 12244555544322211 3569999999999999999999874
No 185
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=54.24 E-value=9.6 Score=35.86 Aligned_cols=52 Identities=19% Similarity=0.114 Sum_probs=33.1
Q ss_pred CcEEEEeCCCcee-eecCCCCCCCCCCceecceeEEeCCChHHHHH-HHhcCceEEEEcCCchHHHHHHHHH
Q 042807 125 KKLLVLDLNGLLA-DIVSPPPKDCKADKKIARHAVFKRPFCHDFLR-FCFERFDVGVWSSRTQKNVERVVDF 194 (343)
Q Consensus 125 KklLVLDLDeTLi-~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~-~l~~~yEIvIwTSa~~~ya~~il~~ 194 (343)
+.+||-||||||+ ... ..+.-+.++|+ ......-+++=|..+..-+..++..
T Consensus 2 ~~ll~sDlD~Tl~~~~~------------------~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~ 55 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGDD------------------EALARLEELLEQQARPEILFVYVTGRSLESVLRLLRE 55 (247)
T ss_dssp SEEEEEETBTTTBHCHH------------------HHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHH
T ss_pred CEEEEEECCCCCcCCCH------------------HHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHh
Confidence 6899999999999 211 12334455666 3334566777777777778888775
No 186
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=53.25 E-value=6 Score=40.50 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=14.1
Q ss_pred CcEEEEeCCCceeeec
Q 042807 125 KKLLVLDLNGLLADIV 140 (343)
Q Consensus 125 KklLVLDLDeTLi~~~ 140 (343)
-+.++|||||||+++.
T Consensus 241 ~k~vIFDlDGTLiDs~ 256 (459)
T PRK06698 241 LQALIFDMDGTLFQTD 256 (459)
T ss_pred hhheeEccCCceecch
Confidence 3689999999999985
No 187
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=52.30 E-value=8 Score=39.29 Aligned_cols=17 Identities=6% Similarity=0.059 Sum_probs=15.0
Q ss_pred CCcEEEEeCCCceeeec
Q 042807 124 RKKLLVLDLNGLLADIV 140 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~ 140 (343)
+-+.+++||||||+++.
T Consensus 130 ~~~~VIFDlDGTLIDS~ 146 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDN 146 (381)
T ss_pred CCCEEEEcCcCcceeCH
Confidence 67889999999999864
No 188
>PLN02940 riboflavin kinase
Probab=50.39 E-value=7.6 Score=39.05 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.7
Q ss_pred CcEEEEeCCCceeeec
Q 042807 125 KKLLVLDLNGLLADIV 140 (343)
Q Consensus 125 KklLVLDLDeTLi~~~ 140 (343)
-+.+++|+||||+++.
T Consensus 11 ik~VIFDlDGTLvDt~ 26 (382)
T PLN02940 11 VSHVILDLDGTLLNTD 26 (382)
T ss_pred CCEEEECCcCcCCcCH
Confidence 4579999999999974
No 189
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=50.03 E-value=9.4 Score=34.13 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=20.7
Q ss_pred EEeCCChHHHHHHHhcC-ceEEEEcCCchH
Q 042807 158 VFKRPFCHDFLRFCFER-FDVGVWSSRTQK 186 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ 186 (343)
.-.=||+.|.|+.|.+. +++++-||+.+.
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 44558999999999987 588877777654
No 190
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=49.96 E-value=7.1 Score=35.85 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=11.5
Q ss_pred EEEEeCCCceeee
Q 042807 127 LLVLDLNGLLADI 139 (343)
Q Consensus 127 lLVLDLDeTLi~~ 139 (343)
++++||||||++.
T Consensus 1 li~~DlDgTLl~~ 13 (236)
T TIGR02471 1 LIITDLDNTLLGD 13 (236)
T ss_pred CeEEeccccccCC
Confidence 5789999999984
No 191
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=49.91 E-value=50 Score=31.67 Aligned_cols=57 Identities=19% Similarity=0.011 Sum_probs=35.0
Q ss_pred CCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHh-cCceEEEEcCCchHHHHHHHHHHc
Q 042807 122 RLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCF-ERFDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 122 ~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~-~~yEIvIwTSa~~~ya~~il~~Ld 196 (343)
.+...++.+|||+||+.+...+.. ...-+.++. ..|+||.=||-+.--....-+.|.
T Consensus 4 ~~~~~lIFtDlD~TLl~~~ye~~p------------------A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~ 61 (274)
T COG3769 4 IQMPLLIFTDLDGTLLPHSYEWQP------------------AAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLG 61 (274)
T ss_pred cccceEEEEcccCcccCCCCCCCc------------------cchHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Confidence 345788999999999995433221 122344444 468888887766544444444454
No 192
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=49.51 E-value=9.4 Score=35.06 Aligned_cols=36 Identities=22% Similarity=0.121 Sum_probs=32.2
Q ss_pred EeCCChHHHHH-HHh-cCceEEEEcCCchHHHHHHHHH
Q 042807 159 FKRPFCHDFLR-FCF-ERFDVGVWSSRTQKNVERVVDF 194 (343)
Q Consensus 159 ~~RP~L~eFL~-~l~-~~yEIvIwTSa~~~ya~~il~~ 194 (343)
..+|++.+.|+ .+. +.+.++|=|++...|++++++.
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHh
Confidence 46899999995 777 5899999999999999999976
No 193
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=49.07 E-value=8.6 Score=35.20 Aligned_cols=13 Identities=38% Similarity=0.623 Sum_probs=11.6
Q ss_pred EEEEeCCCceeee
Q 042807 127 LLVLDLNGLLADI 139 (343)
Q Consensus 127 lLVLDLDeTLi~~ 139 (343)
+.|+||||||+..
T Consensus 3 la~FDlD~TLi~~ 15 (203)
T TIGR02137 3 IACLDLEGVLVPE 15 (203)
T ss_pred EEEEeCCcccHHH
Confidence 6899999999974
No 194
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=48.79 E-value=16 Score=33.60 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=13.4
Q ss_pred cEEEEeCCCceeeec
Q 042807 126 KLLVLDLNGLLADIV 140 (343)
Q Consensus 126 klLVLDLDeTLi~~~ 140 (343)
+.+++|||||||++.
T Consensus 3 ~avIFD~DGvLvDse 17 (221)
T COG0637 3 KAVIFDMDGTLVDSE 17 (221)
T ss_pred cEEEEcCCCCcCcch
Confidence 578999999999984
No 195
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=48.60 E-value=9.6 Score=34.01 Aligned_cols=13 Identities=38% Similarity=0.820 Sum_probs=12.1
Q ss_pred EEEEeCCCceeee
Q 042807 127 LLVLDLNGLLADI 139 (343)
Q Consensus 127 lLVLDLDeTLi~~ 139 (343)
++|+||||||++.
T Consensus 2 ~viFDldgvL~d~ 14 (199)
T PRK09456 2 LYIFDLGNVIVDI 14 (199)
T ss_pred EEEEeCCCccccC
Confidence 7899999999996
No 196
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=46.29 E-value=8.9 Score=32.95 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=12.6
Q ss_pred EEEEeCCCceeeecC
Q 042807 127 LLVLDLNGLLADIVS 141 (343)
Q Consensus 127 lLVLDLDeTLi~~~~ 141 (343)
++|+|+||||+...+
T Consensus 1 l~~fD~DgTl~~~~s 15 (177)
T TIGR01488 1 LAIFDFDGTLTRQDS 15 (177)
T ss_pred CEEecCccccccchh
Confidence 479999999998754
No 197
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=45.97 E-value=11 Score=34.24 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=14.1
Q ss_pred CcEEEEeCCCceeeec
Q 042807 125 KKLLVLDLNGLLADIV 140 (343)
Q Consensus 125 KklLVLDLDeTLi~~~ 140 (343)
++++++|+||||+...
T Consensus 3 ~~~vifDfDgTi~~~d 18 (219)
T PRK09552 3 SIQIFCDFDGTITNND 18 (219)
T ss_pred CcEEEEcCCCCCCcch
Confidence 5689999999999875
No 198
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=45.87 E-value=31 Score=38.33 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=43.8
Q ss_pred CCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC--ceEEEEcCCchHHHHHHHHH
Q 042807 123 LRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER--FDVGVWSSRTQKNVERVVDF 194 (343)
Q Consensus 123 ~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~--yEIvIwTSa~~~ya~~il~~ 194 (343)
.++.+|+||.||||+........ +..+..-|.+.+-|+.|++. -.|+|-|.....-.+..+..
T Consensus 505 a~~rll~LDyDGTL~~~~~~~~~---------p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~ 569 (797)
T PLN03063 505 SNNRLLILGFYGTLTEPRNSQIK---------EMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGE 569 (797)
T ss_pred ccCeEEEEecCccccCCCCCccc---------cccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCC
Confidence 45689999999999954321111 11234457888889999874 67888888888777776643
No 199
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=45.79 E-value=33 Score=32.77 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=33.5
Q ss_pred eEEeCCChHHHHHHHhc--CceEEEEcCCchHHHHHHHHH
Q 042807 157 AVFKRPFCHDFLRFCFE--RFDVGVWSSRTQKNVERVVDF 194 (343)
Q Consensus 157 ~v~~RP~L~eFL~~l~~--~yEIvIwTSa~~~ya~~il~~ 194 (343)
.+-.-||.-+.++++++ .||++|=|-+..-+++.++++
T Consensus 82 ~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea 121 (256)
T KOG3120|consen 82 SIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEA 121 (256)
T ss_pred cCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHH
Confidence 45567999999999996 489999999999999999996
No 200
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=45.78 E-value=30 Score=39.64 Aligned_cols=93 Identities=13% Similarity=0.074 Sum_probs=60.6
Q ss_pred eCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCCCceEEEEEecCceeecccccccccccc-ceeeecccccc
Q 042807 160 KRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDMKHKLLFCWDLSYCTATSFKALENKYKA-LVFKELRKVWE 237 (343)
Q Consensus 160 ~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~~~~i~~vl~Rd~C~~~~~~~~e~~~k~-~~vKDL~~Lw~ 237 (343)
.-|++.++|++|.+ .+.++|-|++...+++.+++.+.-.. ..|..+...+.+.. .+ -.+ .+.+=++.+
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~-~~Fd~iv~~~~~~~--~K-----P~Pe~~~~a~~~l-- 231 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPL-SMFDAIVSADAFEN--LK-----PAPDIFLAAAKIL-- 231 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCCh-hHCCEEEECccccc--CC-----CCHHHHHHHHHHc--
Confidence 47999999999986 59999999999999999998863211 12344444444421 11 011 233333444
Q ss_pred cCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 238 ISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 238 ~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
| .+.+++|+|+|++.-+..--..|+
T Consensus 232 ----------g-v~p~e~v~IgDs~~Di~AA~~aGm 256 (1057)
T PLN02919 232 ----------G-VPTSECVVIEDALAGVQAARAAGM 256 (1057)
T ss_pred ----------C-cCcccEEEEcCCHHHHHHHHHcCC
Confidence 3 688999999999876554444443
No 201
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=44.65 E-value=21 Score=30.81 Aligned_cols=14 Identities=29% Similarity=0.776 Sum_probs=12.4
Q ss_pred EEEEeCCCceeeec
Q 042807 127 LLVLDLNGLLADIV 140 (343)
Q Consensus 127 lLVLDLDeTLi~~~ 140 (343)
.+++|+||||+++.
T Consensus 1 ~iiFD~DGTL~ds~ 14 (185)
T TIGR01990 1 AVIFDLDGVITDTA 14 (185)
T ss_pred CeEEcCCCccccCh
Confidence 47999999999985
No 202
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=43.79 E-value=36 Score=29.28 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=14.3
Q ss_pred CcEEEEeCCCceeeecC
Q 042807 125 KKLLVLDLNGLLADIVS 141 (343)
Q Consensus 125 KklLVLDLDeTLi~~~~ 141 (343)
|.++|+|+||||+...+
T Consensus 1 ~~~iiFD~dgTL~~~~~ 17 (188)
T TIGR01489 1 KVVVVSDFDGTITLNDS 17 (188)
T ss_pred CeEEEEeCCCcccCCCc
Confidence 46899999999999753
No 203
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=43.56 E-value=14 Score=33.15 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=15.0
Q ss_pred CCcEEEEeCCCceeeecC
Q 042807 124 RKKLLVLDLNGLLADIVS 141 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~~ 141 (343)
.-+.+++|+||||++..+
T Consensus 3 ~~k~i~FD~d~TL~d~~~ 20 (229)
T COG1011 3 MIKAILFDLDGTLLDFDS 20 (229)
T ss_pred ceeEEEEecCCcccccch
Confidence 457899999999999753
No 204
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=40.38 E-value=12 Score=33.06 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=34.3
Q ss_pred EEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHc
Q 042807 158 VFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ld 196 (343)
...+|+..++|+.+.+ .+.++|-|++...+++++++.+.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg 125 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILG 125 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcC
Confidence 3579999999999876 58999999999999999998764
No 205
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=39.98 E-value=40 Score=37.84 Aligned_cols=58 Identities=19% Similarity=0.116 Sum_probs=39.5
Q ss_pred CCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc--CceEEEEcCCchHHHHHHHHH
Q 042807 123 LRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE--RFDVGVWSSRTQKNVERVVDF 194 (343)
Q Consensus 123 ~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~--~yEIvIwTSa~~~ya~~il~~ 194 (343)
..+++|+||+||||+..... ....-|.+.+-|+.|+. .-.++|=|.....-++..+..
T Consensus 594 ~~~rlI~LDyDGTLlp~~~~--------------~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~ 653 (854)
T PLN02205 594 TTTRAILLDYDGTLMPQASI--------------DKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSP 653 (854)
T ss_pred hcCeEEEEecCCcccCCccc--------------cCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCC
Confidence 35789999999999965321 01123577788888754 467788888777777666643
No 206
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=39.04 E-value=8.4 Score=33.25 Aligned_cols=13 Identities=38% Similarity=0.731 Sum_probs=11.9
Q ss_pred EEEeCCCceeeec
Q 042807 128 LVLDLNGLLADIV 140 (343)
Q Consensus 128 LVLDLDeTLi~~~ 140 (343)
+++||||||+++.
T Consensus 2 viFD~DGTL~D~~ 14 (175)
T TIGR01493 2 MVFDVYGTLVDVH 14 (175)
T ss_pred eEEecCCcCcccH
Confidence 7899999999975
No 207
>PLN02811 hydrolase
Probab=38.70 E-value=37 Score=30.75 Aligned_cols=96 Identities=8% Similarity=0.074 Sum_probs=54.3
Q ss_pred EEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHH---HcCCCCceEEEEEecC--ceeeccccccccccccceeee
Q 042807 158 VFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDF---LMGDMKHKLLFCWDLS--YCTATSFKALENKYKALVFKE 231 (343)
Q Consensus 158 v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~---Ldp~~~~~i~~vl~Rd--~C~~~~~~~~e~~~k~~~vKD 231 (343)
....||+.++|+.|.+ .+.++|=|++...++...+.. +.. .+.+++..+ .+.. .+. .-..+.+=
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~----~f~~i~~~~~~~~~~--~KP----~p~~~~~a 146 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFS----LMHHVVTGDDPEVKQ--GKP----APDIFLAA 146 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHh----hCCEEEECChhhccC--CCC----CcHHHHHH
Confidence 3457999999999987 599999999988766543321 221 122333334 3321 010 00012222
Q ss_pred cccccccCCCCCCCCCCCCCCCcEEEEECCchhcccCCCCce
Q 042807 232 LRKVWEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPPYTA 273 (343)
Q Consensus 232 L~~Lw~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~Ngi 273 (343)
+..+- .++.+.+++|+|+|++.-+..--..|+
T Consensus 147 ~~~~~----------~~~~~~~~~v~IgDs~~di~aA~~aG~ 178 (220)
T PLN02811 147 ARRFE----------DGPVDPGKVLVFEDAPSGVEAAKNAGM 178 (220)
T ss_pred HHHhC----------CCCCCccceEEEeccHhhHHHHHHCCC
Confidence 22220 013678999999999986655445554
No 208
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=36.70 E-value=74 Score=33.70 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=49.9
Q ss_pred CCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhc-CceEEEEcCCchHHHHHHHHHHc
Q 042807 122 RLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 122 ~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ld 196 (343)
.++...++++.|++++.... ..-..||+..++++.|.+ .+.++|-|+..+.+++.+++.+.
T Consensus 382 ~~g~~~~~~~~~~~~~g~~~--------------~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lg 443 (562)
T TIGR01511 382 EQGSTSVLVAVNGELAGVFA--------------LEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELG 443 (562)
T ss_pred hCCCEEEEEEECCEEEEEEE--------------ecccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcC
Confidence 34566778899999887632 234679999999999987 49999999999999999999863
No 209
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=36.00 E-value=59 Score=36.95 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=46.3
Q ss_pred CCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHhcC--ceEEEEcCCchHHHHHHHHHH
Q 042807 123 LRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCFER--FDVGVWSSRTQKNVERVVDFL 195 (343)
Q Consensus 123 ~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~~~--yEIvIwTSa~~~ya~~il~~L 195 (343)
.++.+|+||.||||+.....+... .+. +....+..-|.+.+-|+.|+.. -.|+|-|.....-.+..+..+
T Consensus 589 a~~RLlfLDyDGTLap~~~~P~~~--~~~-~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~ 660 (934)
T PLN03064 589 SNNRLLILGFNATLTEPVDTPGRR--GDQ-IKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEF 660 (934)
T ss_pred ccceEEEEecCceeccCCCCcccc--ccc-ccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCC
Confidence 457899999999999864332200 000 0111223346688899999974 779999999888888777543
No 210
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=36.00 E-value=45 Score=29.38 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=12.1
Q ss_pred EEEeCCCceeeecC
Q 042807 128 LVLDLNGLLADIVS 141 (343)
Q Consensus 128 LVLDLDeTLi~~~~ 141 (343)
.++|+||||+...+
T Consensus 2 a~FD~DgTL~~~~s 15 (202)
T TIGR01490 2 AFFDFDGTLTAKDT 15 (202)
T ss_pred eEEccCCCCCCCch
Confidence 68999999999754
No 211
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=35.57 E-value=37 Score=32.56 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=31.9
Q ss_pred ceeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHH
Q 042807 155 RHAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFL 195 (343)
Q Consensus 155 ~~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~L 195 (343)
...+..|.+.++|++.|.++ -=+.|||||--.-++.++++-
T Consensus 86 ~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~ 127 (246)
T PF05822_consen 86 ESDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA 127 (246)
T ss_dssp CS---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT
T ss_pred hcchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc
Confidence 45789999999999999986 789999999999999999974
No 212
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=30.89 E-value=83 Score=32.35 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=34.4
Q ss_pred CCCCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHHHHHh-cCceEEEEcC
Q 042807 121 SRLRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFLRFCF-ERFDVGVWSS 182 (343)
Q Consensus 121 ~~~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL~~l~-~~yEIvIwTS 182 (343)
.....+.+.+|||||||+..+..-.+.. ...+.+..++.-.. |+.++ +.|-++|||-
T Consensus 71 v~~~~K~i~FD~dgtlI~t~sg~vf~~~----~~dw~~l~~~vp~K-lktl~~~g~~l~iftn 128 (422)
T KOG2134|consen 71 VNGGSKIIMFDYDGTLIDTKSGKVFPKG----SMDWRILFPEVPSK-LKTLYQDGIKLFIFTN 128 (422)
T ss_pred cCCCcceEEEecCCceeecCCcceeecc----Cccceeeccccchh-hhhhccCCeEEEEEec
Confidence 3446889999999999998753211100 01234444444444 44444 4588888874
No 213
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=30.86 E-value=30 Score=30.26 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=35.6
Q ss_pred eEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHHc
Q 042807 157 AVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 157 ~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~Ld 196 (343)
.-..||++.++|+.|.+. +.++|-|......+..+.+.+.
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lg 165 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLG 165 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT
T ss_pred cCcchhhhhhhhhhhhccCcceeeeeccccccccccccccc
Confidence 335699999999999986 9999999999999999999864
No 214
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=30.67 E-value=62 Score=27.89 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=31.0
Q ss_pred CCChH----HHHHHH-hcCceEEEEcCCchHHHHHHHHHHc
Q 042807 161 RPFCH----DFLRFC-FERFDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 161 RP~L~----eFL~~l-~~~yEIvIwTSa~~~ya~~il~~Ld 196 (343)
+|++. +||+.+ ...++++|=|++...+++++++.+.
T Consensus 87 ~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~ 127 (192)
T PF12710_consen 87 FPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLG 127 (192)
T ss_dssp CTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTT
T ss_pred CcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcC
Confidence 46666 999998 4689999999999999999998654
No 215
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=29.45 E-value=1e+02 Score=24.74 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=14.1
Q ss_pred CcEEEEeCCCceeeec
Q 042807 125 KKLLVLDLNGLLADIV 140 (343)
Q Consensus 125 KklLVLDLDeTLi~~~ 140 (343)
..+|||+=|||.|...
T Consensus 39 ~~~lvLeeDGT~Vd~E 54 (81)
T cd06537 39 VLTLVLEEDGTAVDSE 54 (81)
T ss_pred ceEEEEecCCCEEccH
Confidence 4899999999999864
No 216
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=29.12 E-value=28 Score=30.99 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=17.5
Q ss_pred EEEECCchhcccCCCCc---eecCCCCC
Q 042807 256 VLLDDSPYKALLNPPYT---AIFPCSYK 280 (343)
Q Consensus 256 IlIDDsp~~~~~qP~Ng---iiIP~~f~ 280 (343)
|||||+|.++..-...| |++..||.
T Consensus 139 vlIDD~~~n~~~~~~~g~~~iLfd~p~N 166 (191)
T PF06941_consen 139 VLIDDRPHNLEQFANAGIPVILFDQPYN 166 (191)
T ss_dssp EEEESSSHHHSS-SSESSEEEEE--GGG
T ss_pred EEecCChHHHHhccCCCceEEEEcCCCC
Confidence 89999999998766677 66655553
No 217
>PRK11590 hypothetical protein; Provisional
Probab=28.64 E-value=1e+02 Score=27.89 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=13.9
Q ss_pred CCcEEEEeCCCceeee
Q 042807 124 RKKLLVLDLNGLLADI 139 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~ 139 (343)
.++++++|+||||++.
T Consensus 5 ~~k~~iFD~DGTL~~~ 20 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQ 20 (211)
T ss_pred cceEEEEecCCCCccc
Confidence 5679999999999964
No 218
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=26.62 E-value=45 Score=35.08 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=16.8
Q ss_pred eEEEEcCCchHHHHHHHHH
Q 042807 176 DVGVWSSRTQKNVERVVDF 194 (343)
Q Consensus 176 EIvIwTSa~~~ya~~il~~ 194 (343)
+.+|=||+...|++++++.
T Consensus 124 ~~vvVSASp~~~Vepfa~~ 142 (497)
T PLN02177 124 KRYIITASPRIMVEPFVKT 142 (497)
T ss_pred CEEEEECCcHHHHHHHHHH
Confidence 4599999999999999975
No 219
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=26.13 E-value=52 Score=37.78 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=14.6
Q ss_pred CCcEEEEeCCCceeeec
Q 042807 124 RKKLLVLDLNGLLADIV 140 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~ 140 (343)
.-+.+++||||||+++.
T Consensus 74 ~ikaVIFDlDGTLiDS~ 90 (1057)
T PLN02919 74 KVSAVLFDMDGVLCNSE 90 (1057)
T ss_pred CCCEEEECCCCCeEeCh
Confidence 35679999999999985
No 220
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=26.00 E-value=1.3e+02 Score=23.93 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=19.0
Q ss_pred hhccccCCCCCCCCCCCcEEEEeCCCceeeec
Q 042807 109 RISLSSQFSAPISRLRKKLLVLDLNGLLADIV 140 (343)
Q Consensus 109 ~~~~~~~i~~~~~~~~KklLVLDLDeTLi~~~ 140 (343)
+..+.+.++. ...+|||+=|||.|...
T Consensus 29 K~~~~l~~~~-----~~~~lvL~eDGT~Vd~E 55 (78)
T cd06539 29 KTLDALVITS-----GLVTLVLEEDGTVVDTE 55 (78)
T ss_pred HHHHHhCCCC-----CCcEEEEeCCCCEEccH
Confidence 3344555543 35899999999999864
No 221
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=25.21 E-value=1.5e+02 Score=26.93 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=14.9
Q ss_pred CCcEEEEeCCCceeeec
Q 042807 124 RKKLLVLDLNGLLADIV 140 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~ 140 (343)
..+++++||||||+++.
T Consensus 3 ~~~~iiFDlDGTL~Ds~ 19 (220)
T COG0546 3 MIKAILFDLDGTLVDSA 19 (220)
T ss_pred CCCEEEEeCCCccccCh
Confidence 45789999999999985
No 222
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=25.00 E-value=28 Score=33.01 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=13.3
Q ss_pred EEEEeCCCceeeecC
Q 042807 127 LLVLDLNGLLADIVS 141 (343)
Q Consensus 127 lLVLDLDeTLi~~~~ 141 (343)
++|+|-|+||+...+
T Consensus 2 LvvfDFD~TIvd~ds 16 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDS 16 (234)
T ss_pred EEEEeCCCCccCCcc
Confidence 789999999999754
No 223
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=24.66 E-value=1e+02 Score=26.76 Aligned_cols=12 Identities=8% Similarity=0.271 Sum_probs=5.6
Q ss_pred CCCcEEEEECCc
Q 042807 251 NESNTVLLDDSP 262 (343)
Q Consensus 251 dl~ntIlIDDsp 262 (343)
+.+.|+||=|..
T Consensus 194 ~~~~v~~vGDg~ 205 (215)
T PF00702_consen 194 KPGEVAMVGDGV 205 (215)
T ss_dssp TGGGEEEEESSG
T ss_pred CCCEEEEEccCH
Confidence 334555555543
No 224
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=24.03 E-value=54 Score=34.61 Aligned_cols=19 Identities=21% Similarity=0.034 Sum_probs=18.0
Q ss_pred eEEEEcCCchHHHHHHHHH
Q 042807 176 DVGVWSSRTQKNVERVVDF 194 (343)
Q Consensus 176 EIvIwTSa~~~ya~~il~~ 194 (343)
.++|-||+-..|+++.++.
T Consensus 110 ~~vVVTAsPrvmVEpFake 128 (498)
T PLN02499 110 KRVVVTRMPRVMVERFAKE 128 (498)
T ss_pred eEEEEeCCHHHHHHHHHHH
Confidence 8999999999999999997
No 225
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=23.25 E-value=90 Score=29.39 Aligned_cols=131 Identities=18% Similarity=0.141 Sum_probs=79.1
Q ss_pred CCCcEEEEeCCCceeeecCC--------C----------CCCCCCCcee--------------------cceeEEeCCCh
Q 042807 123 LRKKLLVLDLNGLLADIVSP--------P----------PKDCKADKKI--------------------ARHAVFKRPFC 164 (343)
Q Consensus 123 ~~KklLVLDLDeTLi~~~~~--------~----------~~~~~~Df~~--------------------~~~~v~~RP~L 164 (343)
..+.++|+|+|-|+|+-.-- . ..+-..||+- .......-|+.
T Consensus 14 ~~~~aVcFDvDSTvi~eEgIdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~qv~~~v~~~k~~lT~Gi 93 (227)
T KOG1615|consen 14 RSADAVCFDVDSTVIQEEGIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQPLQVQVEQFVIKQKPTLTPGI 93 (227)
T ss_pred HhcCeEEEecCcchhHHhhHHHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcccHHHHHHHHhcCCCccCCCH
Confidence 45789999999999985310 0 0122345530 11244556899
Q ss_pred HHHHHHHhc-CceEEEEcCCchHHHHHHHHHHcCCC----CceEEEEEecCceeecccc----ccccccccceeeecccc
Q 042807 165 HDFLRFCFE-RFDVGVWSSRTQKNVERVVDFLMGDM----KHKLLFCWDLSYCTATSFK----ALENKYKALVFKELRKV 235 (343)
Q Consensus 165 ~eFL~~l~~-~yEIvIwTSa~~~ya~~il~~Ldp~~----~~~i~~vl~Rd~C~~~~~~----~~e~~~k~~~vKDL~~L 235 (343)
.||...|.+ ...|++-|-+=...+.+|.+.|.=.. ...+.|-.+- .+.++. +.+...|... |..+
T Consensus 94 ~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~G---k~~gfd~~~ptsdsggKa~~---i~~l 167 (227)
T KOG1615|consen 94 RELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDG---KYLGFDTNEPTSDSGGKAEV---IALL 167 (227)
T ss_pred HHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCC---cccccccCCccccCCccHHH---HHHH
Confidence 999999996 59999999999999999999875221 1123332111 111211 1233333223 3333
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEECCchhcccCCC
Q 042807 236 WEISDPNCPWAKGDYNESNTVLLDDSPYKALLNPP 270 (343)
Q Consensus 236 w~~~~p~~p~~~G~rdl~ntIlIDDsp~~~~~qP~ 270 (343)
.. +++-+.++||=|-..-...-|.
T Consensus 168 rk-----------~~~~~~~~mvGDGatDlea~~p 191 (227)
T KOG1615|consen 168 RK-----------NYNYKTIVMVGDGATDLEAMPP 191 (227)
T ss_pred Hh-----------CCChheeEEecCCccccccCCc
Confidence 21 3788999999987766555554
No 226
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=23.18 E-value=1.3e+02 Score=23.99 Aligned_cols=16 Identities=38% Similarity=0.306 Sum_probs=14.0
Q ss_pred CcEEEEeCCCceeeec
Q 042807 125 KKLLVLDLNGLLADIV 140 (343)
Q Consensus 125 KklLVLDLDeTLi~~~ 140 (343)
..+|||+-|||.|...
T Consensus 39 ~~~lvL~eDGT~Vd~E 54 (79)
T cd06538 39 ISSLVLDEDGTGVDTE 54 (79)
T ss_pred ccEEEEecCCcEEccH
Confidence 4899999999999864
No 227
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=22.74 E-value=1.3e+02 Score=28.54 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=34.3
Q ss_pred eEEeCCChHHHHHHHhc---CceEEEEcCCchHHHHHHHHH
Q 042807 157 AVFKRPFCHDFLRFCFE---RFDVGVWSSRTQKNVERVVDF 194 (343)
Q Consensus 157 ~v~~RP~L~eFL~~l~~---~yEIvIwTSa~~~ya~~il~~ 194 (343)
.+-.-|+..+|++++.+ .+|++|=|-|..-|++.++++
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~ 109 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEH 109 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHh
Confidence 56678999999999953 799999999999999999996
No 228
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=22.72 E-value=1e+02 Score=30.88 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=37.2
Q ss_pred eeEEeCCChHHHHHHHhcC-ceEEEEcCCchHHHHHHHHHH
Q 042807 156 HAVFKRPFCHDFLRFCFER-FDVGVWSSRTQKNVERVVDFL 195 (343)
Q Consensus 156 ~~v~~RP~L~eFL~~l~~~-yEIvIwTSa~~~ya~~il~~L 195 (343)
.++.+=|++.++|+.+.+. ..++|=|++...|++.+|+.+
T Consensus 181 ~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l 221 (343)
T TIGR02244 181 KYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYL 221 (343)
T ss_pred HHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Confidence 5788899999999999875 899999999999999999997
No 229
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=21.66 E-value=1.6e+02 Score=26.82 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=15.6
Q ss_pred CCcEEEEeCCCceeeecC
Q 042807 124 RKKLLVLDLNGLLADIVS 141 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~~ 141 (343)
.+++.++|+||||.+..+
T Consensus 4 ~~~la~FDfDgTLt~~ds 21 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQDM 21 (210)
T ss_pred cCcEEEEcCCCCCccCcc
Confidence 578999999999999753
No 230
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=20.81 E-value=1.7e+02 Score=23.39 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=14.6
Q ss_pred CCcEEEEeCCCceeeec
Q 042807 124 RKKLLVLDLNGLLADIV 140 (343)
Q Consensus 124 ~KklLVLDLDeTLi~~~ 140 (343)
...+|||+-|||.|...
T Consensus 41 ~~~~lvL~eDGT~VddE 57 (80)
T cd06536 41 APITLVLAEDGTIVEDE 57 (80)
T ss_pred CceEEEEecCCcEEccH
Confidence 46899999999999864
No 231
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=20.42 E-value=1.5e+02 Score=23.31 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=14.1
Q ss_pred CcEEEEeCCCceeeec
Q 042807 125 KKLLVLDLNGLLADIV 140 (343)
Q Consensus 125 KklLVLDLDeTLi~~~ 140 (343)
..+|||+=|||.|...
T Consensus 38 ~~~l~L~eDGT~VddE 53 (74)
T smart00266 38 PVTLVLEEDGTIVDDE 53 (74)
T ss_pred CcEEEEecCCcEEccH
Confidence 6899999999999864
No 232
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=20.19 E-value=1.1e+02 Score=28.63 Aligned_cols=76 Identities=11% Similarity=0.038 Sum_probs=46.0
Q ss_pred CCCcEEEEeCCCceeeecCCCCCCCCCCceecceeEEeCCChHHHH------HHHhcCceEEEEcCCchHHHHHHHHHHc
Q 042807 123 LRKKLLVLDLNGLLADIVSPPPKDCKADKKIARHAVFKRPFCHDFL------RFCFERFDVGVWSSRTQKNVERVVDFLM 196 (343)
Q Consensus 123 ~~KklLVLDLDeTLi~~~~~~~~~~~~Df~~~~~~v~~RP~L~eFL------~~l~~~yEIvIwTSa~~~ya~~il~~Ld 196 (343)
+.+..+-+|+|.|++.++...-.+ .-+.-|+-++|| +.+...+|=. |-.+++|..+++-=-
T Consensus 61 ~~Pi~VsFDIDDTvLFsSp~F~~G----------k~~~sPgs~DyLknq~FW~~vn~g~D~~---SIPKevA~qLI~MHq 127 (237)
T COG3700 61 RPPIAVSFDIDDTVLFSSPGFWRG----------KKYFSPGSEDYLKNQVFWEKVNNGWDEF---SIPKEVARQLIDMHQ 127 (237)
T ss_pred CCCeeEeeccCCeeEecccccccC----------ccccCCChHHhhcCHHHHHHHhcCCccc---cchHHHHHHHHHHHH
Confidence 345678899999999986322111 234556666655 4455544421 346788888877433
Q ss_pred CCCCceEEEEEecCce
Q 042807 197 GDMKHKLLFCWDLSYC 212 (343)
Q Consensus 197 p~~~~~i~~vl~Rd~C 212 (343)
..+ ..+.|+-+|..-
T Consensus 128 ~RG-D~i~FvTGRt~g 142 (237)
T COG3700 128 RRG-DAIYFVTGRTPG 142 (237)
T ss_pred hcC-CeEEEEecCCCC
Confidence 322 357788777654
Done!