Query         042809
Match_columns 241
No_of_seqs    159 out of 1329
Neff          11.0
Searched_HMMs 13730
Date          Mon Mar 25 17:00:13 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042809.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042809hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2j4za1 d.144.1.7 (A:126-388)  100.0 4.7E-56 3.4E-60  337.2  17.8  218    2-232    27-260 (263)
  2 d1nvra_ d.144.1.7 (A:) Cell cy 100.0 2.9E-56 2.1E-60  339.6  16.4  231    2-238    26-271 (271)
  3 d1yhwa1 d.144.1.7 (A:249-541)  100.0 8.7E-55 6.3E-59  334.8  20.5  223    2-233    41-276 (293)
  4 d1a06a_ d.144.1.7 (A:) Calmodu 100.0 1.1E-54 7.8E-59  336.8  18.8  226    2-235    30-272 (307)
  5 d2jfla1 d.144.1.7 (A:21-308) S 100.0 8.6E-55 6.2E-59  334.4  17.6  227    2-235    33-277 (288)
  6 d1t4ha_ d.144.1.7 (A:) Protein 100.0 7.6E-54 5.5E-58  326.3  20.9  218    2-231    30-270 (270)
  7 d1koaa2 d.144.1.7 (A:5915-6264 100.0 4.3E-54 3.2E-58  338.7  19.9  227    2-235    47-288 (350)
  8 d1uu3a_ d.144.1.7 (A:) 3-phosp 100.0 1.9E-54 1.4E-58  332.3  17.2  223    2-233    29-273 (288)
  9 d1koba_ d.144.1.7 (A:) Twitchi 100.0 5.5E-54   4E-58  338.3  20.1  226    2-234    50-290 (352)
 10 d2java1 d.144.1.7 (A:3-271) Se 100.0 2.8E-54   2E-58  328.7  17.4  220    2-230    25-269 (269)
 11 d1s9ja_ d.144.1.7 (A:) Dual sp 100.0 2.5E-54 1.8E-58  337.5  13.6  225    2-235    27-306 (322)
 12 d1o6la_ d.144.1.7 (A:) Pkb kin 100.0 5.2E-53 3.8E-57  330.7  20.3  221    2-233    26-267 (337)
 13 d1fota_ d.144.1.7 (A:) cAMP-de 100.0   1E-52 7.4E-57  326.9  19.8  218    2-233    25-263 (316)
 14 d1u5ra_ d.144.1.7 (A:) Serine/ 100.0 8.2E-53   6E-57  326.3  18.8  220    2-234    36-274 (309)
 15 d1jksa_ d.144.1.7 (A:) Death-a 100.0 3.4E-53 2.4E-57  327.2  16.1  226    2-235    31-279 (293)
 16 d1phka_ d.144.1.7 (A:) gamma-s 100.0 6.3E-52 4.6E-56  316.7  20.1  224    2-233    24-276 (277)
 17 d1tkia_ d.144.1.7 (A:) Titin,  100.0 1.3E-52 9.4E-57  327.2  14.3  230    2-238    26-269 (321)
 18 d1rdqe_ d.144.1.7 (E:) cAMP-de 100.0 1.1E-51 8.1E-56  325.1  18.6  218    2-233    62-300 (350)
 19 d1omwa3 d.144.1.7 (A:186-549)  100.0 5.2E-51 3.8E-55  322.9  20.6  222    2-233    25-271 (364)
 20 d1xjda_ d.144.1.7 (A:) Protein 100.0 3.7E-51 2.7E-55  318.6  18.0  221    2-233    23-261 (320)
 21 d2ozaa1 d.144.1.7 (A:51-385) M 100.0 2.2E-51 1.6E-55  321.8  15.7  224    2-235    33-280 (335)
 22 d1ua2a_ d.144.1.7 (A:) Cell di 100.0 1.8E-50 1.3E-54  313.0  18.7  227    2-235    19-288 (299)
 23 d1xbba_ d.144.1.7 (A:) Tyrosin 100.0 8.7E-51 6.3E-55  310.7  16.5  223    2-231    30-270 (277)
 24 d1u59a_ d.144.1.7 (A:) Tyrosin 100.0   6E-51 4.4E-55  312.5  15.4  223    3-231    33-272 (285)
 25 d1uwha_ d.144.1.7 (A:) B-Raf k 100.0 3.2E-50 2.3E-54  307.3  18.5  218    7-228    31-267 (276)
 26 d1opja_ d.144.1.7 (A:) Abelson 100.0   2E-49 1.4E-53  304.7  18.3  218    2-226    38-268 (287)
 27 d1jpaa_ d.144.1.7 (A:) ephb2 r 100.0 5.2E-49 3.8E-53  304.0  20.2  217    7-227    55-286 (299)
 28 d1sm2a_ d.144.1.7 (A:) Tyrosin 100.0 3.2E-49 2.3E-53  300.2  18.2  216    4-227    27-255 (263)
 29 d1gz8a_ d.144.1.7 (A:) Cyclin- 100.0 8.3E-49   6E-53  303.3  20.3  228    2-236    23-292 (298)
 30 d1qpca_ d.144.1.7 (A:) Lymphoc 100.0 2.4E-49 1.7E-53  302.2  14.2  220    4-231    35-269 (272)
 31 d1xwsa_ d.144.1.7 (A:) Proto-o 100.0   6E-50 4.4E-54  305.8   9.8  214    2-234    25-262 (273)
 32 d1blxa_ d.144.1.7 (A:) Cyclin- 100.0 2.4E-48 1.7E-52  302.1  18.4  226    2-234    28-300 (305)
 33 d1rjba_ d.144.1.7 (A:) Fl cyto 100.0 1.6E-48 1.2E-52  304.9  17.1  216    6-227    67-320 (325)
 34 d1k2pa_ d.144.1.7 (A:) Bruton' 100.0 3.4E-48 2.4E-52  293.3  18.2  216    4-227    26-254 (258)
 35 d1o6ya_ d.144.1.7 (A:) Mycobac 100.0 1.1E-48 7.9E-53  299.8  14.8  226    2-231    28-273 (277)
 36 d1mp8a_ d.144.1.7 (A:) Focal a 100.0 8.1E-48 5.9E-52  294.2  17.8  216    4-227    33-262 (273)
 37 d3blha1 d.144.1.7 (A:8-325) Ce 100.0 8.4E-48 6.1E-52  300.6  18.1  231    2-235    31-313 (318)
 38 d1mqba_ d.144.1.7 (A:) epha2 r 100.0 4.4E-47 3.2E-51  291.4  20.9  214    7-226    37-265 (283)
 39 d1fmka3 d.144.1.7 (A:249-533)  100.0 3.3E-47 2.4E-51  291.4  18.9  222    5-234    40-276 (285)
 40 d1cm8a_ d.144.1.7 (A:) MAP kin 100.0 3.9E-47 2.8E-51  299.9  19.8  221    2-234    39-308 (346)
 41 d1ob3a_ d.144.1.7 (A:) Cyclin- 100.0 2.3E-47 1.7E-51  293.8  17.6  222    4-232    24-286 (286)
 42 d1vzoa_ d.144.1.7 (A:) Ribosom 100.0 8.5E-48 6.2E-52  299.9  14.6  226    2-233    48-298 (322)
 43 d1byga_ d.144.1.7 (A:) Carboxy 100.0 1.8E-47 1.3E-51  289.7  15.5  211    5-227    29-253 (262)
 44 d1pmea_ d.144.1.7 (A:) MAP kin 100.0 1.9E-46 1.4E-50  295.6  20.9  229    2-236    29-304 (345)
 45 d1ywna1 d.144.1.7 (A:818-1166) 100.0 1.4E-46   1E-50  291.1  18.7  219    3-227    40-290 (299)
 46 d1u46a_ d.144.1.7 (A:) Activat 100.0 1.2E-46   9E-51  287.0  17.7  217    5-226    35-267 (273)
 47 d1lufa_ d.144.1.7 (A:) Musk ty 100.0 4.4E-46 3.2E-50  288.3  20.8  217    3-226    40-294 (301)
 48 d1xkka_ d.144.1.7 (A:) EGF rec 100.0 1.5E-46 1.1E-50  292.7  18.3  213    8-227    40-266 (317)
 49 d1r0pa_ d.144.1.7 (A:) Hepatoc 100.0 8.5E-46 6.2E-50  287.3  21.0  218    6-227    55-287 (311)
 50 d3bqca1 d.144.1.7 (A:3-330) Pr 100.0 1.8E-46 1.3E-50  294.1  17.2  222    2-235    56-327 (328)
 51 d1q5ka_ d.144.1.7 (A:) Glycoge 100.0 1.9E-46 1.4E-50  296.1  17.3  224    2-234    41-310 (350)
 52 d2b1pa1 d.144.1.7 (A:46-400) c 100.0 6.5E-46 4.7E-50  293.6  18.5  220    2-232    38-316 (355)
 53 d1unla_ d.144.1.7 (A:) Cyclin- 100.0 2.2E-45 1.6E-49  283.7  19.3  224    2-232    23-288 (292)
 54 d1fgka_ d.144.1.7 (A:) Fibrobl 100.0 3.8E-45 2.7E-49  282.7  20.5  216    4-226    43-289 (299)
 55 d2gfsa1 d.144.1.7 (A:5-352) MA 100.0 8.4E-46 6.1E-50  292.7  16.6  223    2-235    39-309 (348)
 56 d1p4oa_ d.144.1.7 (A:) Insulin 100.0   8E-45 5.9E-49  281.8  19.3  222    4-232    48-299 (308)
 57 d1fvra_ d.144.1.7 (A:) Tie2 ki 100.0 2.8E-45   2E-49  284.6  15.7  215    3-227    32-279 (309)
 58 d1t46a_ d.144.1.7 (A:) c-KIT r 100.0 2.1E-44 1.5E-48  279.9  19.8  219    2-226    49-300 (311)
 59 d1ckia_ d.144.1.7 (A:) Casein  100.0 1.9E-44 1.4E-48  279.1  12.4  232    2-234    28-282 (299)
 60 d1vjya_ d.144.1.7 (A:) Type I  100.0 8.2E-43   6E-47  269.7  18.7  220    4-227    24-291 (303)
 61 d1csna_ d.144.1.7 (A:) Casein  100.0 1.3E-42 9.3E-47  267.7  15.8  223    2-225    26-270 (293)
 62 d1q8ya_ d.144.1.7 (A:) Sky1p { 100.0 1.6E-39 1.1E-43  258.0  16.2  228    2-238    34-339 (362)
 63 d1zara2 d.144.1.9 (A:91-281) R  99.7 6.2E-19 4.5E-23  126.3   3.4  111    4-117    22-153 (191)
 64 d1j7la_ d.144.1.6 (A:) Type II  98.0 4.3E-06 3.1E-10   61.3   6.0   57    5-61     36-100 (263)
 65 d1nd4a_ d.144.1.6 (A:) Aminogl  97.9 5.8E-06 4.3E-10   60.2   5.2   54    4-58     33-93  (255)
 66 d1zyla1 d.144.1.6 (A:4-328) Rd  97.5  0.0001 7.5E-09   55.6   6.7   54    3-56     43-109 (325)
 67 d2pula1 d.144.1.6 (A:5-396) Me  97.1 0.00044 3.2E-08   53.4   6.7   30   85-115   223-252 (392)
 68 d1nw1a_ d.144.1.8 (A:) Choline  96.4  0.0015 1.1E-07   50.4   4.8   53    6-58     74-128 (395)
 69 d2ppqa1 d.144.1.6 (A:5-320) Ho  96.1 0.00072 5.3E-08   50.5   1.3   31   84-114   182-212 (316)
 70 d1kq8a_ a.4.5.14 (A:) HFH-1 (H  64.4       3 0.00022   23.0   2.8   29  205-233     3-36  (75)
 71 d3bpya1 a.4.5.14 (A:93-177) Af  57.9     5.8 0.00042   22.4   3.4   33  203-235    10-47  (85)
 72 d1e7ua4 d.144.1.4 (A:726-1094)  48.5     4.9 0.00036   29.8   2.5   26   90-115   220-245 (369)
 73 d1cjaa_ d.144.1.3 (A:) Actin-f  46.9      43  0.0031   24.0   7.2  106    7-113    92-235 (342)
 74 d2c6ya1 a.4.5.14 (A:1-98) Inte  43.1     8.5 0.00062   22.3   2.5   31  203-233     8-43  (98)
 75 d2dw4a1 a.4.1.18 (A:172-273) L  41.2     7.2 0.00053   22.8   2.0   28  200-227    39-66  (102)
 76 d2fq3a1 a.4.1.18 (A:311-395) T  38.6      27   0.002   19.4   4.2   31  197-227    30-60  (85)
 77 d2e74f1 f.23.25.1 (F:1-32) Pet  24.9      24  0.0018   14.9   1.7   10  156-165    20-29  (32)
 78 d1d5va_ a.4.5.14 (A:) Adipocyt  22.9      31  0.0022   19.6   2.6   30  203-232     9-43  (94)
 79 d2hdca_ a.4.5.14 (A:) Genesis   20.7      35  0.0025   19.5   2.5   30  203-232     7-41  (97)

No 1  
>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=4.7e-56  Score=337.24  Aligned_cols=218  Identities=27%  Similarity=0.471  Sum_probs=185.5

Q ss_pred             CCCCCcEEEEEeccch-----HHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCH
Q 042809            2 NKGTGALFVVKSAESE-----AGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDA   71 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~   71 (241)
                      |+.+|+.||+|++...     ...+.+.+|+.++++++||||++     .+++.+|+|||||++|+|.+++... ..+++
T Consensus        27 ~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivmEy~~~g~L~~~l~~~-~~l~e  105 (263)
T d2j4za1          27 EKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDE  105 (263)
T ss_dssp             ETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SSCCH
T ss_pred             ECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHhhc-CCCCH
Confidence            6789999999997632     23567899999999999999998     7788999999999999999999874 56888


Q ss_pred             HHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCccccc
Q 042809           72 GVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLR  145 (241)
Q Consensus        72 ~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~  145 (241)
                      ..+..++.|+      ||++|++||||||+||+++.++.+||+|||++.....        .......||+.|+|||.+.
T Consensus       106 ~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~--------~~~~~~~Gt~~Y~APE~~~  177 (263)
T d2j4za1         106 QRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS--------SRRTTLCGTLDYLPPEMIE  177 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCC--------CCCEETTEEGGGCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccceeeecCC--------CcccccCCCCcccCHHHHc
Confidence            8888887765      7999999999999999999999999999999975433        1123456899999999999


Q ss_pred             ccCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHh
Q 042809          146 NEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELL  225 (241)
Q Consensus       146 ~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l  225 (241)
                      +..++.++|||||||++|+|++|+.||.+..........    ....+.+|..+++++.+|+.+||+.||.+|||+++++
T Consensus       178 ~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i----~~~~~~~p~~~s~~~~~li~~~L~~dp~~R~t~~eil  253 (263)
T d2j4za1         178 GRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRI----SRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVL  253 (263)
T ss_dssp             TCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHH----HTTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHHHHHHH----HcCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHH
Confidence            999999999999999999999999999775443332222    2344566777889999999999999999999999999


Q ss_pred             cCCCCCC
Q 042809          226 NHTFISG  232 (241)
Q Consensus       226 ~~p~~~~  232 (241)
                      +||||..
T Consensus       254 ~hp~~~~  260 (263)
T d2j4za1         254 EHPWITA  260 (263)
T ss_dssp             TCHHHHH
T ss_pred             cCcCcCC
Confidence            9999964


No 2  
>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.9e-56  Score=339.62  Aligned_cols=231  Identities=23%  Similarity=0.367  Sum_probs=185.8

Q ss_pred             CCCCCcEEEEEeccch---HHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHH
Q 042809            2 NKGTGALFVVKSAESE---AGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGV   73 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~---~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~   73 (241)
                      |+.||+.||||.+..+   ...+.+.+|+.++++++||||++     ..++.+|+|||||+||+|.+++.. ...+++..
T Consensus        26 ~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~l~~-~~~l~e~~  104 (271)
T d1nvra_          26 NRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEP-DIGMPEPD  104 (271)
T ss_dssp             ETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSBT-TTBCCHHH
T ss_pred             ECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEeccCCCcHHHHHhc-CCCCCHHH
Confidence            6789999999997643   23467899999999999999998     677899999999999999999976 46788888


Q ss_pred             HHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCccccccc
Q 042809           74 IRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRNE  147 (241)
Q Consensus        74 ~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~  147 (241)
                      ++.++.|+      ||++|++||||||+||+++.++.+||+|||++........    ........||+.|+|||++.+.
T Consensus       105 ~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~----~~~~~~~~GT~~Y~APE~~~~~  180 (271)
T d1nvra_         105 AQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR----ERLLNKMCGTLPYVAPELLKRR  180 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTE----ECCBCCCCSCGGGSCTHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheeeccCCc----cccccceeeCcCccCHhHhcCC
Confidence            88887766      7999999999999999999999999999999986543211    1222345799999999999887


Q ss_pred             CC-CchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhc
Q 042809          148 GL-DFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLN  226 (241)
Q Consensus       148 ~~-~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~  226 (241)
                      .+ +.++||||+||++|+|++|+.||......... ................+++++.+|+.+||+.||.+|||++++++
T Consensus       181 ~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         181 EFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQE-YSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKK  259 (271)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHH-HHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHH-HHHHhcCCCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            76 57899999999999999999999765433222 22222222223334567889999999999999999999999999


Q ss_pred             CCCCCCCCccCC
Q 042809          227 HTFISGNAKKNS  238 (241)
Q Consensus       227 ~p~~~~~~~~~~  238 (241)
                      ||||+...++.|
T Consensus       260 hpwf~~~l~kg~  271 (271)
T d1nvra_         260 DRWYNKPLKKGA  271 (271)
T ss_dssp             CTTTTCCCCCCC
T ss_pred             CHhhCcCCCCCC
Confidence            999998777654


No 3  
>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.7e-55  Score=334.77  Aligned_cols=223  Identities=34%  Similarity=0.550  Sum_probs=185.2

Q ss_pred             CCCCCcEEEEEeccch--HHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHHH
Q 042809            2 NKGTGALFVVKSAESE--AGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGVI   74 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~--~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~   74 (241)
                      |+.+|+.||||.+...  ...+.+.+|+.++++++||||++     ..++.+|+|||||+||+|.+++..  ..+++..+
T Consensus        41 ~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~~~~--~~l~~~~~  118 (293)
T d1yhwa1          41 DVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE--TCMDEGQI  118 (293)
T ss_dssp             BTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHH--SCCCHHHH
T ss_pred             ECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEecCCCcHHHHhhc--cCCCHHHH
Confidence            6789999999997632  34577999999999999999998     667889999999999999998876  46888888


Q ss_pred             HHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccccC
Q 042809           75 RLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRNEG  148 (241)
Q Consensus        75 ~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~  148 (241)
                      +.++.|+      ||++|++||||||+||+++.+|.+||+|||++.......      .......||+.|+|||++.+..
T Consensus       119 ~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~------~~~~~~~gt~~Y~aPE~~~~~~  192 (293)
T d1yhwa1         119 AAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ------SKRSTMVGTPYWMAPEVVTRKA  192 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTT------CCBCCCCSCGGGCCHHHHSSSC
T ss_pred             HHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeecccc------ccccccccCCCccChhhhcCCC
Confidence            8887766      799999999999999999999999999999997653311      1223456999999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhcCC
Q 042809          149 LDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLNHT  228 (241)
Q Consensus       149 ~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~p  228 (241)
                      ++.++||||+||++|+|++|..||.+........... .........+..+++++.+||.+||+.||.+|||++++++||
T Consensus       193 ~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~Hp  271 (293)
T d1yhwa1         193 YGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIA-TNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQ  271 (293)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHH-HHCSCCCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHTTCG
T ss_pred             CCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHH-hCCCCCCCCcccCCHHHHHHHHHHccCChhHCcCHHHHhcCH
Confidence            9999999999999999999999997654333222221 122223345677889999999999999999999999999999


Q ss_pred             CCCCC
Q 042809          229 FISGN  233 (241)
Q Consensus       229 ~~~~~  233 (241)
                      ||+..
T Consensus       272 ~~~~~  276 (293)
T d1yhwa1         272 FLKIA  276 (293)
T ss_dssp             GGGGC
T ss_pred             hhCCC
Confidence            99753


No 4  
>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00  E-value=1.1e-54  Score=336.78  Aligned_cols=226  Identities=25%  Similarity=0.400  Sum_probs=172.7

Q ss_pred             CCCCCcEEEEEeccch---HHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHH
Q 042809            2 NKGTGALFVVKSAESE---AGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGV   73 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~---~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~   73 (241)
                      |+.+|+.||||.+...   .....+.+|+.++++++||||++     .+++.+|+|||||+||+|.+++.. ...+++..
T Consensus        30 ~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE~~~gg~L~~~l~~-~~~l~e~~  108 (307)
T d1a06a_          30 DKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVE-KGFYTERD  108 (307)
T ss_dssp             ETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHT-CSCCCHHH
T ss_pred             ECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHhhhc-ccCCCHHH
Confidence            5789999999998743   23456789999999999999998     678899999999999999999987 56789999


Q ss_pred             HHHHHHHH------hhcCCccccCCCCCcEEee---cCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccc
Q 042809           74 IRLYTKEI------LHGNGILHCDLKCNNVLLG---SHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVL  144 (241)
Q Consensus        74 ~~~~~~~~------Lh~~~~vH~dl~p~Nil~~---~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~  144 (241)
                      +..++.|+      ||++|++||||||+||+++   .++.+||+|||++......       .......||+.|+|||++
T Consensus       109 ~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~-------~~~~~~~GT~~y~APE~~  181 (307)
T d1a06a_         109 ASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPG-------SVLSTACGTPGYVAPEVL  181 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC-------------------------CTTSCHHHH
T ss_pred             HHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccCC-------CeeeeeeeCccccCcHHH
Confidence            88888766      7999999999999999995   4688999999999755431       122345699999999999


Q ss_pred             cccCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHH
Q 042809          145 RNEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEEL  224 (241)
Q Consensus       145 ~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~  224 (241)
                      .+..++.++||||+||++|+|++|..||.+.....................+..+++++.+||.+||+.||.+|||++|+
T Consensus       182 ~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~ei  261 (307)
T d1a06a_         182 AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQA  261 (307)
T ss_dssp             TTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred             cCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCCCccccCCCHHHHHHHHHHccCCHhHCcCHHHH
Confidence            99999999999999999999999999998754443333222222222333446788999999999999999999999999


Q ss_pred             hcCCCCCCCCc
Q 042809          225 LNHTFISGNAK  235 (241)
Q Consensus       225 l~~p~~~~~~~  235 (241)
                      ++||||++...
T Consensus       262 l~hp~~~~~~~  272 (307)
T d1a06a_         262 LQHPWIAGDTA  272 (307)
T ss_dssp             HHSTTTTSSCC
T ss_pred             hcCHhhCCCCc
Confidence            99999986543


No 5  
>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.6e-55  Score=334.44  Aligned_cols=227  Identities=33%  Similarity=0.538  Sum_probs=186.6

Q ss_pred             CCCCCcEEEEEeccc--hHHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHHH
Q 042809            2 NKGTGALFVVKSAES--EAGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGVI   74 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~--~~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~   74 (241)
                      |+.+|+.||+|.+..  ....+.+.+|++++++++||||++     ..++.+|+|||||+||+|.+++...+..+++..+
T Consensus        33 ~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~~~g~L~~~~~~~~~~l~e~~~  112 (288)
T d2jfla1          33 NKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQI  112 (288)
T ss_dssp             ETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHHTSCCCHHHH
T ss_pred             ECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecCCCCcHHHHHHhcCCCCCHHHH
Confidence            678999999999864  345678999999999999999998     6778899999999999999998877778999988


Q ss_pred             HHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCccccc---
Q 042809           75 RLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLR---  145 (241)
Q Consensus        75 ~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~---  145 (241)
                      ..++.|+      ||++|++||||||+||+++.+|.+||+|||++.......      .......||+.|+|||++.   
T Consensus       113 ~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~------~~~~~~~Gt~~y~APE~l~~~~  186 (288)
T d2jfla1         113 QVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTI------QRRDSFIGTPYWMAPEVVMCET  186 (288)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHH------HHHTCCCSCCTTCCHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhccCCCc------ccccccccccccCCHHHHhhcc
Confidence            8888766      799999999999999999999999999999986543311      1123456899999999984   


Q ss_pred             --ccCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHH
Q 042809          146 --NEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEE  223 (241)
Q Consensus       146 --~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~  223 (241)
                        +..++.++|||||||++|+|++|+.||.+............ ........+..+++++.+||++||+.||.+|||+++
T Consensus       187 ~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~~~i~~-~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e  265 (288)
T d2jfla1         187 SKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAK-SEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQ  265 (288)
T ss_dssp             TTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHH-SCCCCCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             cCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHc-CCCCCCCccccCCHHHHHHHHHHccCChhHCcCHHH
Confidence              45678999999999999999999999987544433222221 111223345678899999999999999999999999


Q ss_pred             HhcCCCCCCCCc
Q 042809          224 LLNHTFISGNAK  235 (241)
Q Consensus       224 ~l~~p~~~~~~~  235 (241)
                      +++||||+....
T Consensus       266 ll~hp~~~~~~~  277 (288)
T d2jfla1         266 LLQHPFVTVDSN  277 (288)
T ss_dssp             HTTSGGGCCCCC
T ss_pred             HhcCcccCCCCC
Confidence            999999986543


No 6  
>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=7.6e-54  Score=326.25  Aligned_cols=218  Identities=28%  Similarity=0.511  Sum_probs=176.3

Q ss_pred             CCCCCcEEEEEeccc----hHHHHHHHHHHHHHhhcCCCcccc---------cCCceeeeeecccCCCCHHHHHHHhCCC
Q 042809            2 NKGTGALFVVKSAES----EAGVQALRNEAEIRQSLNSPNIGR---------NGEKTVNIFMEYMAGGSLLDVAEKFGGT   68 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~----~~~~~~~~~e~~~l~~l~h~~i~~---------~~~~~~~lv~e~~~~~~L~~~l~~~~~~   68 (241)
                      |+.+|..||+|.+..    ....+.+.+|+++|++++||||++         ..+..+|+|||||++|+|.+++... ..
T Consensus        30 ~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~-~~  108 (270)
T d1t4ha_          30 DTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF-KV  108 (270)
T ss_dssp             ETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHH-SS
T ss_pred             ECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEEeCCCCCcHHHHHhcc-cc
Confidence            678899999998763    334567899999999999999998         2356789999999999999999874 56


Q ss_pred             CCHHHHHHHHHHH------hhcCC--ccccCCCCCcEEee-cCCCeeecCCCcchhhcccccCCccccccccccCccccc
Q 042809           69 LDAGVIRLYTKEI------LHGNG--ILHCDLKCNNVLLG-SHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWM  139 (241)
Q Consensus        69 ~~~~~~~~~~~~~------Lh~~~--~vH~dl~p~Nil~~-~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (241)
                      +++..+..++.|+      ||+++  ++||||||+||+++ .++.+||+|||++.....        .......||+.|+
T Consensus       109 ~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~--------~~~~~~~GT~~Y~  180 (270)
T d1t4ha_         109 MKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA--------SFAKAVIGTPEFM  180 (270)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCT--------TSBEESCSSCCCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccC--------CccCCcccCcccc
Confidence            8888877776655      79998  99999999999996 478999999999974322        1123457999999


Q ss_pred             CcccccccCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcC-CCCCCChhhHHHHHHHHHHhhccCCCCC
Q 042809          140 APEVLRNEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSN-EKPHFPTQFFKKVLDFLAKCLERKPEKR  218 (241)
Q Consensus       140 aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~R  218 (241)
                      |||.+.+ .++.++|||||||++|+|++|+.||.+....  ..+....... .+...+...++++.+||.+||+.+|++|
T Consensus       181 aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R  257 (270)
T d1t4ha_         181 APEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNA--AQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDER  257 (270)
T ss_dssp             CGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH--HHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGS
T ss_pred             CHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCcccH--HHHHHHHHcCCCCcccCccCCHHHHHHHHHHccCCHhHC
Confidence            9999876 5899999999999999999999999754322  2222222222 2233455567889999999999999999


Q ss_pred             CChHHHhcCCCCC
Q 042809          219 WSAEELLNHTFIS  231 (241)
Q Consensus       219 ps~~~~l~~p~~~  231 (241)
                      ||++|+++||||+
T Consensus       258 ~s~~ell~Hp~fk  270 (270)
T d1t4ha_         258 YSIKDLLNHAFFQ  270 (270)
T ss_dssp             CCHHHHHTSGGGC
T ss_pred             cCHHHHhCCcccC
Confidence            9999999999996


No 7  
>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}
Probab=100.00  E-value=4.3e-54  Score=338.68  Aligned_cols=227  Identities=23%  Similarity=0.406  Sum_probs=188.2

Q ss_pred             CCCCCcEEEEEeccc--hHHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHHH
Q 042809            2 NKGTGALFVVKSAES--EAGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGVI   74 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~--~~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~   74 (241)
                      ++.+|+.||||++..  ....+.+.+|+.++++++||||++     ..++.+|+|||||+||+|.+++....+.+++..+
T Consensus        47 ~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~l~~~~~~l~e~~~  126 (350)
T d1koaa2          47 ERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEA  126 (350)
T ss_dssp             ETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTCTTSCBCHHHH
T ss_pred             ECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCCHHHHHHhhcCCCCHHHH
Confidence            578999999999864  344577899999999999999998     6788999999999999999999766678999999


Q ss_pred             HHHHHHH------hhcCCccccCCCCCcEEeec--CCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccc
Q 042809           75 RLYTKEI------LHGNGILHCDLKCNNVLLGS--HGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRN  146 (241)
Q Consensus        75 ~~~~~~~------Lh~~~~vH~dl~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~  146 (241)
                      ..++.|+      ||++|++||||||+||+++.  ++.+||+|||++......       .......||+.|+|||++.+
T Consensus       127 ~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~-------~~~~~~~gT~~Y~aPEv~~~  199 (350)
T d1koaa2         127 VEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK-------QSVKVTTGTAEFAAPEVAEG  199 (350)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTT-------SCEEEECSCTTTCCHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheecccc-------cccceecCcccccCHHHHcC
Confidence            9888866      79999999999999999964  578999999999765431       22234678999999999999


Q ss_pred             cCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhc
Q 042809          147 EGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLN  226 (241)
Q Consensus       147 ~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~  226 (241)
                      ..++.++|||||||++|+|++|..||.+.........+..............+++++.+||++||+.||.+|||++++++
T Consensus       200 ~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~  279 (350)
T d1koaa2         200 KPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALE  279 (350)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCCGGGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             CCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            99999999999999999999999999876544433333322222223333567889999999999999999999999999


Q ss_pred             CCCCCCCCc
Q 042809          227 HTFISGNAK  235 (241)
Q Consensus       227 ~p~~~~~~~  235 (241)
                      ||||+....
T Consensus       280 hp~~~~~~~  288 (350)
T d1koaa2         280 HPWLTPGNA  288 (350)
T ss_dssp             STTTSCTTC
T ss_pred             CcccCCCCC
Confidence            999986543


No 8  
>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.9e-54  Score=332.30  Aligned_cols=223  Identities=28%  Similarity=0.506  Sum_probs=183.4

Q ss_pred             CCCCCcEEEEEeccch-----HHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCH
Q 042809            2 NKGTGALFVVKSAESE-----AGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDA   71 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~   71 (241)
                      ++.||+.||||++...     ...+.+.+|++++++++||||++     .+++.+|+|||||+||+|.+++... +.+++
T Consensus        29 ~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~~~~~-~~l~e  107 (288)
T d1uu3a_          29 ELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI-GSFDE  107 (288)
T ss_dssp             ETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH-SSCCH
T ss_pred             ECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEEEccCCCCHHHhhhcc-CCCCH
Confidence            5789999999998743     33467899999999999999998     6788999999999999999998874 67888


Q ss_pred             HHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCccccc
Q 042809           72 GVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLR  145 (241)
Q Consensus        72 ~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~  145 (241)
                      ..++.++.|+      ||++|++||||||+||+++.+|.+||+|||++........    ........||+.|+|||++.
T Consensus       108 ~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~----~~~~~~~~GT~~Y~APE~~~  183 (288)
T d1uu3a_         108 TCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK----QARANSFVGTAQYVSPELLT  183 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECC--------------CCCCGGGCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEecccccceecccCCc----ccccccccCCccccCceeec
Confidence            8888777755      7999999999999999999999999999999976533111    11223456999999999999


Q ss_pred             ccCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHH--
Q 042809          146 NEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEE--  223 (241)
Q Consensus       146 ~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~--  223 (241)
                      +..++.++||||+||++|+|++|..||.+.........+    ......+|..+++++.+||++||+.||.+|||++|  
T Consensus       184 ~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i----~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~e~~  259 (288)
T d1uu3a_         184 EKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKI----IKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEME  259 (288)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH----HTTCCCCCTTCCHHHHHHHHTTSCSSGGGSTTSGGGT
T ss_pred             cCCCCcccceehhhHHHHHHhhCCCCCCCcCHHHHHHHH----HcCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHc
Confidence            999999999999999999999999999875433322221    23445677788999999999999999999999988  


Q ss_pred             ----HhcCCCCCCC
Q 042809          224 ----LLNHTFISGN  233 (241)
Q Consensus       224 ----~l~~p~~~~~  233 (241)
                          +++||||++-
T Consensus       260 ~~~~i~~Hpff~~i  273 (288)
T d1uu3a_         260 GYGPLKAHPFFESV  273 (288)
T ss_dssp             CHHHHHTSGGGTTC
T ss_pred             CCHHHHcCCccCCC
Confidence                5889999764


No 9  
>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}
Probab=100.00  E-value=5.5e-54  Score=338.31  Aligned_cols=226  Identities=23%  Similarity=0.411  Sum_probs=189.6

Q ss_pred             CCCCCcEEEEEeccch--HHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHHH
Q 042809            2 NKGTGALFVVKSAESE--AGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGVI   74 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~--~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~   74 (241)
                      |+.+|+.||||++...  .....+.+|+.++++++||||++     ..++.+|+|||||+||+|.+++...+.++++..+
T Consensus        50 ~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~~~~~~~~l~e~~~  129 (352)
T d1koba_          50 EKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEV  129 (352)
T ss_dssp             ETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHH
T ss_pred             ECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCChHHHHHHhcCCCCCHHHH
Confidence            6789999999998743  34567889999999999999998     6788999999999999999998876778999999


Q ss_pred             HHHHHHH------hhcCCccccCCCCCcEEee--cCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccc
Q 042809           75 RLYTKEI------LHGNGILHCDLKCNNVLLG--SHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRN  146 (241)
Q Consensus        75 ~~~~~~~------Lh~~~~vH~dl~p~Nil~~--~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~  146 (241)
                      +.++.|+      ||++|++||||||+|||++  .++.+||+|||++.....       ........|++.|+|||++.+
T Consensus       130 ~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~-------~~~~~~~~gt~~y~aPE~~~~  202 (352)
T d1koba_         130 INYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNP-------DEIVKVTTATAEFAAPEIVDR  202 (352)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCT-------TSCEEEECSSGGGCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCC-------CCceeeccCcccccCHHHHcC
Confidence            8888766      7999999999999999997  568899999999976543       122334568999999999999


Q ss_pred             cCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhc
Q 042809          147 EGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLN  226 (241)
Q Consensus       147 ~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~  226 (241)
                      ..++.++|||||||++|+|++|..||.+........................+++++.+||++||+.||.+|||++++++
T Consensus       203 ~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  282 (352)
T d1koba_         203 EPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE  282 (352)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            99999999999999999999999999876554443333332223334445678899999999999999999999999999


Q ss_pred             CCCCCCCC
Q 042809          227 HTFISGNA  234 (241)
Q Consensus       227 ~p~~~~~~  234 (241)
                      ||||++..
T Consensus       283 Hp~~~~~~  290 (352)
T d1koba_         283 HPWLKGDH  290 (352)
T ss_dssp             STTTSSCC
T ss_pred             CHhhCCCc
Confidence            99998654


No 10 
>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.8e-54  Score=328.70  Aligned_cols=220  Identities=31%  Similarity=0.453  Sum_probs=172.6

Q ss_pred             CCCCCcEEEEEeccc----hHHHHHHHHHHHHHhhcCCCcccc-------cCCceeeeeecccCCCCHHHHHHH---hCC
Q 042809            2 NKGTGALFVVKSAES----EAGVQALRNEAEIRQSLNSPNIGR-------NGEKTVNIFMEYMAGGSLLDVAEK---FGG   67 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~----~~~~~~~~~e~~~l~~l~h~~i~~-------~~~~~~~lv~e~~~~~~L~~~l~~---~~~   67 (241)
                      ++.||+.||+|.+..    +...+.+.+|++++++++||||++       ..++.+|+|||||++|+|.+++..   .+.
T Consensus        25 ~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~ivmEy~~~g~L~~~i~~~~~~~~  104 (269)
T d2java1          25 RKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQ  104 (269)
T ss_dssp             ETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEEEECCTTEEHHHHHHHHHHHTC
T ss_pred             ECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEEEecCCCCcHHHHHHhccccCC
Confidence            678999999998763    344677899999999999999998       235678999999999999999875   256


Q ss_pred             CCCHHHHHHHHHHH------hhcCC-----ccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcc
Q 042809           68 TLDAGVIRLYTKEI------LHGNG-----ILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQ  136 (241)
Q Consensus        68 ~~~~~~~~~~~~~~------Lh~~~-----~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  136 (241)
                      .+++..++.++.|+      ||++|     ++||||||+||+++.++.+||+|||++.......      .......||+
T Consensus       105 ~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~------~~~~~~~gt~  178 (269)
T d2java1         105 YLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDT------SFAKAFVGTP  178 (269)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHHC-----------------CCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeecccCC------CccccCCCCc
Confidence            78998888887765      79866     9999999999999999999999999998654311      1123456899


Q ss_pred             cccCcccccccCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCC
Q 042809          137 LWMAPEVLRNEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPE  216 (241)
Q Consensus       137 ~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  216 (241)
                      .|+|||.+.+..++.++|||||||++|+|++|+.||.+.......   ........+..+..+++++.+|+++||+.||.
T Consensus       179 ~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~~~---~~i~~~~~~~~~~~~s~~l~~li~~~L~~dp~  255 (269)
T d2java1         179 YYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELA---GKIREGKFRRIPYRYSDELNEIITRMLNLKDY  255 (269)
T ss_dssp             SCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH---HHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             ccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHHHH---HHHHcCCCCCCCcccCHHHHHHHHHHcCCChh
Confidence            999999999999999999999999999999999999875443332   22223444556778889999999999999999


Q ss_pred             CCCChHHHhcCCCC
Q 042809          217 KRWSAEELLNHTFI  230 (241)
Q Consensus       217 ~Rps~~~~l~~p~~  230 (241)
                      +|||++++++|||+
T Consensus       256 ~Rps~~ell~hp~i  269 (269)
T d2java1         256 HRPSVEEILENPLI  269 (269)
T ss_dssp             GSCCHHHHHTSTTC
T ss_pred             HCcCHHHHHhCCcC
Confidence            99999999999996


No 11 
>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.5e-54  Score=337.54  Aligned_cols=225  Identities=30%  Similarity=0.469  Sum_probs=180.7

Q ss_pred             CCCCCcEEEEEeccc---hHHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHH
Q 042809            2 NKGTGALFVVKSAES---EAGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGV   73 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~---~~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~   73 (241)
                      ++.||+.||+|+++.   +.....+.+|+.++++++||||++     ..++++|+|||||+||+|.+++... ..+++..
T Consensus        27 ~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmEy~~gg~L~~~l~~~-~~l~~~~  105 (322)
T d1s9ja_          27 HKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA-GRIPEQI  105 (322)
T ss_dssp             ETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHHHH-SSCCHHH
T ss_pred             ECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHhhc-CCCCHHH
Confidence            578999999999763   344577899999999999999999     6788999999999999999999874 5688888


Q ss_pred             HHHHHHHH------hhc-CCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccc
Q 042809           74 IRLYTKEI------LHG-NGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRN  146 (241)
Q Consensus        74 ~~~~~~~~------Lh~-~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~  146 (241)
                      ++.++.|+      ||+ +|++||||||+||+++.+|.+||+|||++....+.        ......||+.|+|||++.+
T Consensus       106 ~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~--------~~~~~~GT~~Y~APEvl~~  177 (322)
T d1s9ja_         106 LGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS--------MANSFVGTRSYMSPERLQG  177 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH--------TC---CCSSCCCCHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccccCCC--------ccccccCCccccCchHHcC
Confidence            88877765      797 59999999999999999999999999999865441        1124579999999999999


Q ss_pred             cCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHH---------------------------------------HHHH
Q 042809          147 EGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATL---------------------------------------LKIA  187 (241)
Q Consensus       147 ~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~---------------------------------------~~~~  187 (241)
                      ..++.++||||+||++|+|++|+.||.+.........                                       ....
T Consensus       178 ~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (322)
T d1s9ja_         178 THYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYI  257 (322)
T ss_dssp             SCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC------------------------------CCCCHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHHHhhh
Confidence            9999999999999999999999999976433221111                                       0111


Q ss_pred             hcCCCCCCC-hhhHHHHHHHHHHhhccCCCCCCChHHHhcCCCCCCCCc
Q 042809          188 CSNEKPHFP-TQFFKKVLDFLAKCLERKPEKRWSAEELLNHTFISGNAK  235 (241)
Q Consensus       188 ~~~~~~~~~-~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~p~~~~~~~  235 (241)
                      .....+..+ ...+.++.+|+.+||..||.+|||++|+++||||+....
T Consensus       258 ~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~Hpf~~~~~~  306 (322)
T d1s9ja_         258 VNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDA  306 (322)
T ss_dssp             HTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHHHH
T ss_pred             hccCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCHhhCcCCc
Confidence            111112222 235678999999999999999999999999999976443


No 12 
>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=5.2e-53  Score=330.67  Aligned_cols=221  Identities=27%  Similarity=0.446  Sum_probs=187.3

Q ss_pred             CCCCCcEEEEEeccch-----HHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCH
Q 042809            2 NKGTGALFVVKSAESE-----AGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDA   71 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~   71 (241)
                      ++.||+.||||++.+.     ...+.+.+|+.+|++++||||++     .+.+.+|+|||||+||+|.+++... ..+++
T Consensus        26 ~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~ey~~gg~L~~~~~~~-~~~~e  104 (337)
T d1o6la_          26 EKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE-RVFTE  104 (337)
T ss_dssp             ETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SCCCH
T ss_pred             ECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccceeccCCCchhhhhhcc-cCCcH
Confidence            6789999999998743     23567889999999999999998     7888999999999999999999884 57888


Q ss_pred             HHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCccccc
Q 042809           72 GVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLR  145 (241)
Q Consensus        72 ~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~  145 (241)
                      ..++.++.|+      ||++|++||||||+||+++.+|.+||+|||++.......      ......+||+.|+|||++.
T Consensus       105 ~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~------~~~~~~~GT~~Y~aPE~~~  178 (337)
T d1o6la_         105 ERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG------ATMKTFCGTPEYLAPEVLE  178 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT------CCBCCCEECGGGCCGGGGS
T ss_pred             HHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeecccccccccCC------cccccceeCHHHhhhhhcc
Confidence            8888887765      799999999999999999999999999999997543211      1223456999999999999


Q ss_pred             ccCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCC-----
Q 042809          146 NEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWS-----  220 (241)
Q Consensus       146 ~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-----  220 (241)
                      +..++.++|+||+||++|+|++|+.||.+...........    .....+|..+++++.+||++||++||.+|++     
T Consensus       179 ~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i~----~~~~~~p~~~s~~~~dli~~~L~~dP~~R~~~~~~~  254 (337)
T d1o6la_         179 DNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELIL----MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSD  254 (337)
T ss_dssp             SSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH----HCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTT
T ss_pred             CCCCChhhcccchhhHHHHHHHCCCCCCCcCHHHHHHHHh----cCCCCCCccCCHHHHHHHHhhccCCchhhccccccc
Confidence            9999999999999999999999999998765544333222    2345677888999999999999999999994     


Q ss_pred             hHHHhcCCCCCCC
Q 042809          221 AEELLNHTFISGN  233 (241)
Q Consensus       221 ~~~~l~~p~~~~~  233 (241)
                      ++++++||||++.
T Consensus       255 ~~eil~Hp~f~~i  267 (337)
T d1o6la_         255 AKEVMEHRFFLSI  267 (337)
T ss_dssp             HHHHHTSGGGTTC
T ss_pred             HHHHHcCcccccC
Confidence            8999999999763


No 13 
>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=1e-52  Score=326.90  Aligned_cols=218  Identities=28%  Similarity=0.497  Sum_probs=184.0

Q ss_pred             CCCCCcEEEEEeccch-----HHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCH
Q 042809            2 NKGTGALFVVKSAESE-----AGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDA   71 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~   71 (241)
                      |+.+|+.||||++..+     ...+.+.+|+.++++++||||++     ..++.+|+|||||+||+|..++.. ...+++
T Consensus        25 ~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~l~~~~~~-~~~~~~  103 (316)
T d1fota_          25 SRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRK-SQRFPN  103 (316)
T ss_dssp             ETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-TSSCCH
T ss_pred             ECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEeeecCCccccccccc-cccccc
Confidence            5789999999998743     23567899999999999999998     778899999999999999999987 566777


Q ss_pred             HHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCccccc
Q 042809           72 GVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLR  145 (241)
Q Consensus        72 ~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~  145 (241)
                      ..++.++.|+      ||++|++||||||+||+++.+|.+||+|||++......         ....+||+.|+|||.+.
T Consensus       104 ~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~---------~~~~~Gt~~Y~APE~l~  174 (316)
T d1fota_         104 PVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV---------TYTLCGTPDYIAPEVVS  174 (316)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC---------BCCCCSCTTTCCHHHHT
T ss_pred             cHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCccceEeccc---------cccccCcccccCHHHHc
Confidence            7777666655      79999999999999999999999999999999765431         22456999999999999


Q ss_pred             ccCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCC-----C
Q 042809          146 NEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRW-----S  220 (241)
Q Consensus       146 ~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s  220 (241)
                      +..++.++||||+||++|+|++|+.||.+...........    ......+..+++++.+++.+||..+|.+|+     |
T Consensus       175 ~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~----~~~~~~p~~~s~~~~~li~~~L~~dp~~R~~~~r~t  250 (316)
T d1fota_         175 TKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKIL----NAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNG  250 (316)
T ss_dssp             TCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHH----HCCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTT
T ss_pred             CCCCCchhhccccchhHHHHHhCCCCCCCcCHHHHHHHHH----cCCCCCCCCCCHHHHHHHHHHhhhCHHhccccchhh
Confidence            9999999999999999999999999998754433322222    223456677889999999999999999996     9


Q ss_pred             hHHHhcCCCCCCC
Q 042809          221 AEELLNHTFISGN  233 (241)
Q Consensus       221 ~~~~l~~p~~~~~  233 (241)
                      ++++++||||++-
T Consensus       251 ~~~il~Hp~f~~i  263 (316)
T d1fota_         251 TEDVKNHPWFKEV  263 (316)
T ss_dssp             THHHHTSGGGSSC
T ss_pred             HHHHHcCcccccC
Confidence            9999999999874


No 14 
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00  E-value=8.2e-53  Score=326.26  Aligned_cols=220  Identities=29%  Similarity=0.416  Sum_probs=181.1

Q ss_pred             CCCCCcEEEEEeccc-----hHHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCH
Q 042809            2 NKGTGALFVVKSAES-----EAGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDA   71 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~   71 (241)
                      ++.||+.||||.+..     ....+.+.+|+.++++++||||++     ..++..|+|||||.+|+|..++.. ..++++
T Consensus        36 ~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~~~~-~~~l~e  114 (309)
T d1u5ra_          36 DVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVH-KKPLQE  114 (309)
T ss_dssp             ETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHH-TSCCCH
T ss_pred             ECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEEecCCCchHHHHHh-CCCCCH
Confidence            578999999998762     344567899999999999999998     567889999999999998777665 577899


Q ss_pred             HHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCccccc
Q 042809           72 GVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLR  145 (241)
Q Consensus        72 ~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~  145 (241)
                      ..+..++.|+      ||++|++||||||+||+++.++.+||+|||++.....          .....||+.|+|||++.
T Consensus       115 ~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~----------~~~~~GT~~Y~APE~~~  184 (309)
T d1u5ra_         115 VEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP----------ANSFVGTPYWMAPEVIL  184 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS----------BCCCCSCGGGCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccccccCC----------CCccccCccccCHHHHh
Confidence            9888888766      7999999999999999999999999999999975432          12346999999999986


Q ss_pred             c---cCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChH
Q 042809          146 N---EGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAE  222 (241)
Q Consensus       146 ~---~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  222 (241)
                      +   ..++.++|||||||++|+|++|..||.+.....  ..........+...+..+++.+.+||.+||+.||.+|||++
T Consensus       185 ~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~--~~~~i~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~  262 (309)
T d1u5ra_         185 AMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS--ALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSE  262 (309)
T ss_dssp             TTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH--HHHHHHHSCCCCCSCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHH--HHHHHHhCCCCCCCCCCCCHHHHHHHHHHCcCChhHCcCHH
Confidence            4   458899999999999999999999997653322  22222223333334556788999999999999999999999


Q ss_pred             HHhcCCCCCCCC
Q 042809          223 ELLNHTFISGNA  234 (241)
Q Consensus       223 ~~l~~p~~~~~~  234 (241)
                      ++++||||....
T Consensus       263 ell~Hp~~~~~~  274 (309)
T d1u5ra_         263 VLLKHRFVLRER  274 (309)
T ss_dssp             HHTTCHHHHSCC
T ss_pred             HHHhCHHhcCCC
Confidence            999999997643


No 15 
>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.4e-53  Score=327.23  Aligned_cols=226  Identities=24%  Similarity=0.415  Sum_probs=181.9

Q ss_pred             CCCCCcEEEEEeccch--------HHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCC
Q 042809            2 NKGTGALFVVKSAESE--------AGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGT   68 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~--------~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~   68 (241)
                      ++.||+.||||++...        ...+.+.+|+.++++++||||++     .+.+.+|+|||||+||+|.+++... ..
T Consensus        31 ~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~gg~L~~~i~~~-~~  109 (293)
T d1jksa_          31 EKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK-ES  109 (293)
T ss_dssp             ETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-SS
T ss_pred             ECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCccccchhccc-cc
Confidence            5789999999987532        23577999999999999999999     7888999999999999999999874 57


Q ss_pred             CCHHHHHHHHHHH------hhcCCccccCCCCCcEEeecCC----CeeecCCCcchhhcccccCCccccccccccCcccc
Q 042809           69 LDAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHG----DVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLW  138 (241)
Q Consensus        69 ~~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (241)
                      +++..++.++.|+      ||++|++||||||+||+++.++    .+|++|||++......       .......|++.|
T Consensus       110 l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~-------~~~~~~~~t~~y  182 (293)
T d1jksa_         110 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFG-------NEFKNIFGTPEF  182 (293)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTS-------CBCSCCCCCGGG
T ss_pred             cchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhcCCC-------ccccccCCCCcc
Confidence            8888888887765      7999999999999999998876    4999999999765431       122345689999


Q ss_pred             cCcccccccCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCC
Q 042809          139 MAPEVLRNEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKR  218 (241)
Q Consensus       139 ~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  218 (241)
                      +|||.+.+..++.++||||+||++|+|++|..||.+.....................+...+.++.+||++||+.||.+|
T Consensus       183 ~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  262 (293)
T d1jksa_         183 VAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKR  262 (293)
T ss_dssp             CCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGS
T ss_pred             cCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCCCchhcCCCCHHHHHHHHHHccCChhHC
Confidence            99999999999999999999999999999999998754433322222111111112224567889999999999999999


Q ss_pred             CChHHHhcCCCCCCCCc
Q 042809          219 WSAEELLNHTFISGNAK  235 (241)
Q Consensus       219 ps~~~~l~~p~~~~~~~  235 (241)
                      ||++++++||||++...
T Consensus       263 ~s~~eil~hp~~~~~~~  279 (293)
T d1jksa_         263 MTIQDSLQHPWIKPKDT  279 (293)
T ss_dssp             CCHHHHHHSTTTCC---
T ss_pred             cCHHHHhcCcccCCCCh
Confidence            99999999999986443


No 16 
>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=100.00  E-value=6.3e-52  Score=316.72  Aligned_cols=224  Identities=25%  Similarity=0.386  Sum_probs=183.4

Q ss_pred             CCCCCcEEEEEeccch-----------HHHHHHHHHHHHHhhcC-CCcccc-----cCCceeeeeecccCCCCHHHHHHH
Q 042809            2 NKGTGALFVVKSAESE-----------AGVQALRNEAEIRQSLN-SPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEK   64 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~-----------~~~~~~~~e~~~l~~l~-h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~   64 (241)
                      ++.+|+.||||++...           ...+.+.+|+.+++++. ||||++     .+++.+|+|||||+||+|.+++..
T Consensus        24 ~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~  103 (277)
T d1phka_          24 HKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTE  103 (277)
T ss_dssp             ETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH
T ss_pred             ECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccCcceEEEEEcCCCchHHHHHHh
Confidence            5678999999997532           23456889999999997 999998     788899999999999999999987


Q ss_pred             hCCCCCHHHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccc
Q 042809           65 FGGTLDAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLW  138 (241)
Q Consensus        65 ~~~~~~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (241)
                      . +++++..++.++.|+      ||++|++||||||+||+++.++.+||+|||++......       .......||+.|
T Consensus       104 ~-~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~-------~~~~~~~gt~~y  175 (277)
T d1phka_         104 K-VTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPG-------EKLREVCGTPSY  175 (277)
T ss_dssp             H-SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTT-------CCBCCCCSCGGG
T ss_pred             c-CCCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccchheeEccCC-------CceeeeeccCCC
Confidence            4 578999999888866      79999999999999999999999999999999865441       112335689999


Q ss_pred             cCcccccc------cCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhc
Q 042809          139 MAPEVLRN------EGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLE  212 (241)
Q Consensus       139 ~aPE~~~~------~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  212 (241)
                      +|||.+.+      ..++.++||||+||++|+|++|+.||.+........................+++++.+|+++||+
T Consensus       176 ~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  255 (277)
T d1phka_         176 LAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLV  255 (277)
T ss_dssp             CCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCC
T ss_pred             CCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHcc
Confidence            99999864      346789999999999999999999998765444333322222222223335788999999999999


Q ss_pred             cCCCCCCChHHHhcCCCCCCC
Q 042809          213 RKPEKRWSAEELLNHTFISGN  233 (241)
Q Consensus       213 ~~p~~Rps~~~~l~~p~~~~~  233 (241)
                      .+|.+|||++++++||||+..
T Consensus       256 ~~p~~R~s~~eil~h~~~~~~  276 (277)
T d1phka_         256 VQPQKRYTAEEALAHPFFQQY  276 (277)
T ss_dssp             SSGGGSCCHHHHTTSGGGCTT
T ss_pred             CChhHCcCHHHHHcCHHHHHh
Confidence            999999999999999999863


No 17 
>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.3e-52  Score=327.15  Aligned_cols=230  Identities=19%  Similarity=0.327  Sum_probs=185.7

Q ss_pred             CCCCCcEEEEEeccchH-HHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHHHH
Q 042809            2 NKGTGALFVVKSAESEA-GVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGVIR   75 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~~-~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~   75 (241)
                      |+.||+.||+|.++... ....+.+|+++|++++||||++     .+++.+|+|||||+||+|.+++...+..+++..++
T Consensus        26 ~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~~gg~L~~~i~~~~~~l~e~~~~  105 (321)
T d1tkia_          26 ETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIV  105 (321)
T ss_dssp             ETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHH
T ss_pred             ECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecCCCCcHHHHHHhcCCCCCHHHHH
Confidence            67899999999988543 3456889999999999999998     67789999999999999999998766689999988


Q ss_pred             HHHHHH------hhcCCccccCCCCCcEEeecC--CCeeecCCCcchhhcccccCCccccccccccCcccccCccccccc
Q 042809           76 LYTKEI------LHGNGILHCDLKCNNVLLGSH--GDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRNE  147 (241)
Q Consensus        76 ~~~~~~------Lh~~~~vH~dl~p~Nil~~~~--~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~  147 (241)
                      .++.|+      ||++|++||||||+||+++.+  +.++|+|||++.....       ........+++.|+|||.+.+.
T Consensus       106 ~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~-------~~~~~~~~~t~~y~ape~~~~~  178 (321)
T d1tkia_         106 SYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKP-------GDNFRLLFTAPEYYAPEVHQHD  178 (321)
T ss_dssp             HHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCT-------TCEEEEEESCGGGSCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhcccc-------CCcccccccccccccchhccCC
Confidence            887765      799999999999999999865  4799999999875433       1222345689999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhcC
Q 042809          148 GLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLNH  227 (241)
Q Consensus       148 ~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~  227 (241)
                      .++.++||||+||++|+|++|..||.+.........+..............+++++.+||++||..||.+|||++++++|
T Consensus       179 ~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~h  258 (321)
T d1tkia_         179 VVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQH  258 (321)
T ss_dssp             EECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             CCCchhhcccHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCChhhccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            99999999999999999999999998765444333322211111111113467889999999999999999999999999


Q ss_pred             CCCCCCCccCC
Q 042809          228 TFISGNAKKNS  238 (241)
Q Consensus       228 p~~~~~~~~~~  238 (241)
                      |||+......+
T Consensus       259 p~~~~~~~~~~  269 (321)
T d1tkia_         259 PWLKQKIERVS  269 (321)
T ss_dssp             HHHHSCGGGSC
T ss_pred             HhhccCccccC
Confidence            99987654433


No 18 
>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=1.1e-51  Score=325.08  Aligned_cols=218  Identities=28%  Similarity=0.507  Sum_probs=184.8

Q ss_pred             CCCCCcEEEEEeccch-----HHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCH
Q 042809            2 NKGTGALFVVKSAESE-----AGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDA   71 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~   71 (241)
                      |+.||+.||||++...     ...+.+.+|+.+|+.++||||++     ......++||||+.+|+|..++... ..+++
T Consensus        62 ~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~l~~~-~~l~e  140 (350)
T d1rdqe_          62 HKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRI-GRFSE  140 (350)
T ss_dssp             ETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-CCCCH
T ss_pred             ECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccccccccccccccchhhhHhhc-CCCCH
Confidence            6789999999998643     23466899999999999999998     6788899999999999999999874 57889


Q ss_pred             HHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCccccc
Q 042809           72 GVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLR  145 (241)
Q Consensus        72 ~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~  145 (241)
                      ..++.++.|+      ||++|++||||||+|||++.+|.+||+|||++.....         ......||+.|+|||++.
T Consensus       141 ~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~---------~~~~~~Gt~~Y~APE~~~  211 (350)
T d1rdqe_         141 PHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---------RTWTLCGTPEALAPEIIL  211 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSS---------CBCCCEECGGGCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeeeeccc---------ccccccCccccCCHHHHc
Confidence            8888887766      7999999999999999999999999999999976533         112356899999999999


Q ss_pred             ccCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCC-----C
Q 042809          146 NEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRW-----S  220 (241)
Q Consensus       146 ~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s  220 (241)
                      +..++.++|||||||++|+|+||+.||.+.........+.    ......+..+++++.+||++||..||.+|+     |
T Consensus       212 ~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~----~~~~~~p~~~s~~~~~li~~~L~~dP~kR~~~~r~t  287 (350)
T d1rdqe_         212 SKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV----SGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNG  287 (350)
T ss_dssp             TCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH----HCCCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTT
T ss_pred             CCCCCccccccchhHHHHHHHhCCCCCCCcCHHHHHHHHh----cCCCCCCccCCHHHHHHHHHHhhhCHHhcccccccc
Confidence            9999999999999999999999999998754333222222    233455677889999999999999999995     9


Q ss_pred             hHHHhcCCCCCCC
Q 042809          221 AEELLNHTFISGN  233 (241)
Q Consensus       221 ~~~~l~~p~~~~~  233 (241)
                      ++++++||||++.
T Consensus       288 ~~ell~Hp~f~~~  300 (350)
T d1rdqe_         288 VNDIKNHKWFATT  300 (350)
T ss_dssp             THHHHTSGGGTTC
T ss_pred             HHHHHcCccccCC
Confidence            9999999999764


No 19 
>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00  E-value=5.2e-51  Score=322.85  Aligned_cols=222  Identities=25%  Similarity=0.417  Sum_probs=180.6

Q ss_pred             CCCCCcEEEEEeccchH-----HHHHHH---HHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCC
Q 042809            2 NKGTGALFVVKSAESEA-----GVQALR---NEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGT   68 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~~-----~~~~~~---~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~   68 (241)
                      ++.||+.||||++....     ....+.   +++.+++.++||||++     ...+.+|+|||||+||+|.+++... ..
T Consensus        25 ~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~ivmE~~~gg~L~~~l~~~-~~  103 (364)
T d1omwa3          25 KADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH-GV  103 (364)
T ss_dssp             ETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-CS
T ss_pred             ECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEEEEEEecCCCcHHHHHHhc-cc
Confidence            57899999999986332     122233   4466777788999998     6778999999999999999999874 56


Q ss_pred             CCHHHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcc
Q 042809           69 LDAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPE  142 (241)
Q Consensus        69 ~~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE  142 (241)
                      +++..++.++.|+      ||++|++||||||+||+++.+|.+||+|||++......        ......||+.|+|||
T Consensus       104 ~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~--------~~~~~~GT~~y~APE  175 (364)
T d1omwa3         104 FSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK--------KPHASVGTHGYMAPE  175 (364)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSS--------CCCSCCSCGGGCCHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeeceeeecCCC--------cccccccccccchhH
Confidence            7888877777655      79999999999999999999999999999999755431        123456999999999


Q ss_pred             cccc-cCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCC-
Q 042809          143 VLRN-EGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWS-  220 (241)
Q Consensus       143 ~~~~-~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-  220 (241)
                      .+.+ ..++.++|||||||++|+|+||+.||.+........... .........+..+++++.+||.+||+.||.+||| 
T Consensus       176 ~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~  254 (364)
T d1omwa3         176 VLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDR-MTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGC  254 (364)
T ss_dssp             HHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHH-HSSSCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTT
T ss_pred             HhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-hcccCCCCCCCCCCHHHHHHHHHHcccCHHHhCCC
Confidence            9964 568999999999999999999999997755444433333 3334555667788999999999999999999999 


Q ss_pred             ----hHHHhcCCCCCCC
Q 042809          221 ----AEELLNHTFISGN  233 (241)
Q Consensus       221 ----~~~~l~~p~~~~~  233 (241)
                          ++++++||||++-
T Consensus       255 ~~~~a~eil~Hp~f~~i  271 (364)
T d1omwa3         255 LGRGAQEVKESPFFRSL  271 (364)
T ss_dssp             SSSTHHHHHTSGGGTTC
T ss_pred             cccCHHHHHcCccccCC
Confidence                7999999999864


No 20 
>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.7e-51  Score=318.61  Aligned_cols=221  Identities=26%  Similarity=0.468  Sum_probs=183.0

Q ss_pred             CCCCCcEEEEEeccch-----HHHHHHHHHHHHHh-hcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCC
Q 042809            2 NKGTGALFVVKSAESE-----AGVQALRNEAEIRQ-SLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLD   70 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~-----~~~~~~~~e~~~l~-~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~   70 (241)
                      ++.||+.||||++...     ...+.+.+|..++. .++||||++     ..++.+|+|||||++|+|.+++... ..++
T Consensus        23 ~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yivmEy~~~g~L~~~i~~~-~~~~  101 (320)
T d1xjda_          23 FKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC-HKFD  101 (320)
T ss_dssp             ETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SSCC
T ss_pred             ECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEEEeecCCCcHHHHhhcc-CCCC
Confidence            6789999999998743     23445677777665 689999998     7788999999999999999999874 5688


Q ss_pred             HHHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccc
Q 042809           71 AGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVL  144 (241)
Q Consensus        71 ~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~  144 (241)
                      +..++.++.|+      ||++|++||||||+||+++.++.+||+|||++.......      .......||+.|+|||.+
T Consensus       102 e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~------~~~~~~~gt~~y~aPE~~  175 (320)
T d1xjda_         102 LSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGD------AKTNTFCGTPDYIAPEIL  175 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT------CCBCCCCSCGGGCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchhhhccccc------ccccccCCCCCcCCHHHH
Confidence            88888777655      799999999999999999999999999999997543211      122345689999999999


Q ss_pred             cccCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChH-H
Q 042809          145 RNEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAE-E  223 (241)
Q Consensus       145 ~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~-~  223 (241)
                      .+..++.++||||+||++|+|++|+.||.+...........    ...+.+|..+++++.+||++||..||.+|||+. +
T Consensus       176 ~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~----~~~~~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~  251 (320)
T d1xjda_         176 LGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIR----MDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGD  251 (320)
T ss_dssp             TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH----HCCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSC
T ss_pred             cCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHH----cCCCCCCccCCHHHHHHHHHhcccCCCCCcCHHHH
Confidence            99999999999999999999999999998765444333322    234567778899999999999999999999995 8


Q ss_pred             HhcCCCCCCC
Q 042809          224 LLNHTFISGN  233 (241)
Q Consensus       224 ~l~~p~~~~~  233 (241)
                      +++||||++-
T Consensus       252 l~~hpff~~~  261 (320)
T d1xjda_         252 IRQHPLFREI  261 (320)
T ss_dssp             GGGSGGGTTC
T ss_pred             HHhCchhccC
Confidence            9999999763


No 21 
>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.2e-51  Score=321.82  Aligned_cols=224  Identities=29%  Similarity=0.425  Sum_probs=177.9

Q ss_pred             CCCCCcEEEEEeccchHHHHHHHHHHHHHhhc-CCCcccc---------cCCceeeeeecccCCCCHHHHHHHhC-CCCC
Q 042809            2 NKGTGALFVVKSAESEAGVQALRNEAEIRQSL-NSPNIGR---------NGEKTVNIFMEYMAGGSLLDVAEKFG-GTLD   70 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l-~h~~i~~---------~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~   70 (241)
                      |+.||+.||||+++..   ..+.+|+.++.++ +||||++         ..+..+|+|||||+||+|.+++...+ ..++
T Consensus        33 ~~~~~~~vAiK~i~~~---~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~  109 (335)
T d2ozaa1          33 NKRTQEKFALKMLQDC---PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFT  109 (335)
T ss_dssp             ETTTCCEEEEEEEECS---HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHSCSCCCEE
T ss_pred             ECCCCCEEEEEEECCc---HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEEECCCCCcHHHHHHhcCCCCcC
Confidence            6789999999998754   4567899987655 7999998         23577999999999999999998753 4689


Q ss_pred             HHHHHHHHHHH------hhcCCccccCCCCCcEEeec---CCCeeecCCCcchhhcccccCCccccccccccCcccccCc
Q 042809           71 AGVIRLYTKEI------LHGNGILHCDLKCNNVLLGS---HGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAP  141 (241)
Q Consensus        71 ~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~---~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aP  141 (241)
                      +..++.++.|+      ||++|++||||||+||+++.   ++.+||+|||++......       .......||+.|+||
T Consensus       110 e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~-------~~~~~~~gt~~y~aP  182 (335)
T d2ozaa1         110 EREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSH-------NSLTTPCYTPYYVAP  182 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCC-------CCCCCCSCCCSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccccccccccccccccccccccccccceeeeccCC-------CccccccCCcccCCc
Confidence            99988887765      79999999999999999976   457999999999755431       122345699999999


Q ss_pred             ccccccCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCC----hhhHHHHHHHHHHhhccCCCC
Q 042809          142 EVLRNEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFP----TQFFKKVLDFLAKCLERKPEK  217 (241)
Q Consensus       142 E~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~l~~~p~~  217 (241)
                      |++.+..++.++|||||||++|+|+||+.||.+....................++    ..+++++.+||++||+.||.+
T Consensus       183 E~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~  262 (335)
T d2ozaa1         183 EVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQ  262 (335)
T ss_dssp             CCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTT
T ss_pred             HHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHHHccCChhH
Confidence            9999999999999999999999999999999776544333333322222333333    346789999999999999999


Q ss_pred             CCChHHHhcCCCCCCCCc
Q 042809          218 RWSAEELLNHTFISGNAK  235 (241)
Q Consensus       218 Rps~~~~l~~p~~~~~~~  235 (241)
                      |||++++++||||.....
T Consensus       263 R~s~~eil~hp~~~~~~~  280 (335)
T d2ozaa1         263 RMTITEFMNHPWIMQSTK  280 (335)
T ss_dssp             SCCHHHHHHSHHHHTTTS
T ss_pred             CcCHHHHHcCHHhhCCCC
Confidence            999999999999976554


No 22 
>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.8e-50  Score=313.00  Aligned_cols=227  Identities=22%  Similarity=0.317  Sum_probs=175.1

Q ss_pred             CCCCCcEEEEEeccchH-------HHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCC
Q 042809            2 NKGTGALFVVKSAESEA-------GVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTL   69 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~~-------~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~   69 (241)
                      |+.+|+.||||+++...       ..+.+.+|+.++++++||||++     ..++++|+||||+.++++..+.. .+..+
T Consensus        19 ~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~~~~~~~~~~~-~~~~l   97 (299)
T d1ua2a_          19 DKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKD-NSLVL   97 (299)
T ss_dssp             CSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECCSEEHHHHHTT-CCSSC
T ss_pred             ECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhhcchHHhhhhh-cccCC
Confidence            67899999999986332       1245889999999999999998     77888999999998766655544 35667


Q ss_pred             CHHHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCccc
Q 042809           70 DAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEV  143 (241)
Q Consensus        70 ~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~  143 (241)
                      ++..+..++.|+      ||++|++||||||+||+++.++.+||+|||++.......      .......||+.|+|||.
T Consensus        98 ~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~------~~~~~~~gt~~y~aPE~  171 (299)
T d1ua2a_          98 TPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPN------RAYTHQVVTRWYRAPEL  171 (299)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCC------CCCCCSCCCCTTCCHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCccccccCCCc------ccccceecChhhccHHH
Confidence            777777776655      799999999999999999999999999999997554311      12233568999999999


Q ss_pred             ccc-cCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCC-------------------CCC-----Chh
Q 042809          144 LRN-EGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEK-------------------PHF-----PTQ  198 (241)
Q Consensus       144 ~~~-~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-------------------~~~-----~~~  198 (241)
                      +.+ ..++.++||||+||++|+|++|..||.+.........+........                   +..     ...
T Consensus       172 ~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (299)
T d1ua2a_         172 LFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSA  251 (299)
T ss_dssp             HTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTT
T ss_pred             HccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhccc
Confidence            865 4579999999999999999999999977554433322222211100                   000     123


Q ss_pred             hHHHHHHHHHHhhccCCCCCCChHHHhcCCCCCCCCc
Q 042809          199 FFKKVLDFLAKCLERKPEKRWSAEELLNHTFISGNAK  235 (241)
Q Consensus       199 ~~~~~~~li~~~l~~~p~~Rps~~~~l~~p~~~~~~~  235 (241)
                      .++++.+|+++||+.||++|||++|+++||||++.+.
T Consensus       252 ~s~~~~dll~~~L~~dP~~R~sa~e~L~Hp~f~~~p~  288 (299)
T d1ua2a_         252 AGDDLLDLIQGLFLFNPCARITATQALKMKYFSNRPG  288 (299)
T ss_dssp             CCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSSC
T ss_pred             CCHHHHHHHHHHccCChhhCcCHHHHhCCHhhCCCCC
Confidence            4678999999999999999999999999999987765


No 23 
>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.7e-51  Score=310.74  Aligned_cols=223  Identities=22%  Similarity=0.302  Sum_probs=179.3

Q ss_pred             CCCCCcEEEEEeccch----HHHHHHHHHHHHHhhcCCCcccc----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHH
Q 042809            2 NKGTGALFVVKSAESE----AGVQALRNEAEIRQSLNSPNIGR----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGV   73 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~----~~~~~~~~e~~~l~~l~h~~i~~----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~   73 (241)
                      ++++++.||||++..+    ...+.+.+|+++|++++||||++    ..++..++|||||++|+|.+++.. ...+++..
T Consensus        30 ~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~~~~lvmE~~~~g~L~~~l~~-~~~l~~~~  108 (277)
T d1xbba_          30 MKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQ-NRHVKDKN  108 (277)
T ss_dssp             CSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHHHH-CTTCCHHH
T ss_pred             cCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccCCEEEEEEcCCCCcHHHHHhh-ccCCCHHH
Confidence            3567789999997632    33567999999999999999998    334567899999999999999987 56788888


Q ss_pred             HHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCccccccc
Q 042809           74 IRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRNE  147 (241)
Q Consensus        74 ~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~  147 (241)
                      +..++.|+      ||+++++||||||+||+++.++.+||+|||++.......   ..........||+.|+|||.+.+.
T Consensus       109 ~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~---~~~~~~~~~~gt~~y~APE~l~~~  185 (277)
T d1xbba_         109 IIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADE---NYYKAQTHGKWPVKWYAPECINYY  185 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTC---SEEEC----CCCGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhhccccc---cccccccccCCCceecCchhhcCC
Confidence            88777765      799999999999999999999999999999997543311   111222345689999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHHh-CCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHH--
Q 042809          148 GLDFATDIWSLGCMVIEMAT-GRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEEL--  224 (241)
Q Consensus       148 ~~~~~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~--  224 (241)
                      .++.++||||||+++|||++ |+.||.+.....   .......+..+..|..+++++.+|+.+||+.+|.+|||++++  
T Consensus       186 ~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~---~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~  262 (277)
T d1xbba_         186 KFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE---VTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVEL  262 (277)
T ss_dssp             EEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH---HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             CCCchhhhccchhhhhHHhhCCCCCCCCCCHHH---HHHHHHcCCCCCCCcccCHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence            99999999999999999998 899998754433   333333456677788889999999999999999999999998  


Q ss_pred             -hcCCCCC
Q 042809          225 -LNHTFIS  231 (241)
Q Consensus       225 -l~~p~~~  231 (241)
                       |+|+|+.
T Consensus       263 ~L~~~~~~  270 (277)
T d1xbba_         263 RLRNYYYD  270 (277)
T ss_dssp             HHHHHHHH
T ss_pred             HhhCHHhh
Confidence             4666653


No 24 
>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=6e-51  Score=312.51  Aligned_cols=223  Identities=19%  Similarity=0.298  Sum_probs=182.2

Q ss_pred             CCCCcEEEEEecc---chHHHHHHHHHHHHHhhcCCCcccc----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHHHH
Q 042809            3 KGTGALFVVKSAE---SEAGVQALRNEAEIRQSLNSPNIGR----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGVIR   75 (241)
Q Consensus         3 ~~~~~~vaiK~~~---~~~~~~~~~~e~~~l~~l~h~~i~~----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~   75 (241)
                      .+++..||||.+.   .+...+.+.+|+++|++++||||++    ...+.+|+|||||++|+|.+++...+..+++..+.
T Consensus        33 ~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~lvmE~~~~g~L~~~l~~~~~~l~~~~~~  112 (285)
T d1u59a_          33 RKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVA  112 (285)
T ss_dssp             --CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHHTTCTTTSCHHHHH
T ss_pred             CCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccCeEEEEEEeCCCCcHHHHhhccccCCCHHHHH
Confidence            3456689999976   2445678999999999999999998    33456899999999999999988766788988888


Q ss_pred             HHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccccCC
Q 042809           76 LYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRNEGL  149 (241)
Q Consensus        76 ~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~  149 (241)
                      .++.|+      ||++|++||||||+||+++.++.+||+|||++........   .........||+.|+|||.+.+..+
T Consensus       113 ~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~  189 (285)
T d1u59a_         113 ELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDS---YYTARSAGKWPLKWYAPECINFRKF  189 (285)
T ss_dssp             HHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSC---EECCCCSSCCCGGGCCHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhhccccccc---ccccccccccCccccChHHHhCCCC
Confidence            887765      7999999999999999999999999999999976543211   1112233458899999999999999


Q ss_pred             CchhhHHHHHHHHHHHHh-CCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHH---h
Q 042809          150 DFATDIWSLGCMVIEMAT-GRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEEL---L  225 (241)
Q Consensus       150 ~~~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~---l  225 (241)
                      +.++||||||+++|||+| |+.||.+......   ......+..+..|..+++++.+||++||+.+|.+|||+.++   |
T Consensus       190 ~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~---~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L  266 (285)
T d1u59a_         190 SSRSDVWSYGVTMWEALSYGQKPYKKMKGPEV---MAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRM  266 (285)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHH---HHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             CccchhhcchHHHHHHHhCCCCCCCCCCHHHH---HHHHHcCCCCCCCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence            999999999999999998 9999987544332   33334456677788899999999999999999999999888   5


Q ss_pred             cCCCCC
Q 042809          226 NHTFIS  231 (241)
Q Consensus       226 ~~p~~~  231 (241)
                      +++|+.
T Consensus       267 ~~~~~~  272 (285)
T d1u59a_         267 RACYYS  272 (285)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            677764


No 25 
>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.2e-50  Score=307.29  Aligned_cols=218  Identities=23%  Similarity=0.372  Sum_probs=170.6

Q ss_pred             cEEEEEecc----chHHHHHHHHHHHHHhhcCCCcccc----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHHHHHHH
Q 042809            7 ALFVVKSAE----SEAGVQALRNEAEIRQSLNSPNIGR----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGVIRLYT   78 (241)
Q Consensus         7 ~~vaiK~~~----~~~~~~~~~~e~~~l~~l~h~~i~~----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~   78 (241)
                      ..||||+++    ++...+.+.+|+.++.+++||||++    ..++.+++|||||++|+|.+++...+..+++..+..++
T Consensus        31 ~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~  110 (276)
T d1uwha_          31 GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIA  110 (276)
T ss_dssp             SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCCEEEHHHHHHTSCCCCCHHHHHHHH
T ss_pred             CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEeccEEEEEEecCCCCCHHHHHhhccCCCCHHHHHHHH
Confidence            459999976    3455788999999999999999998    45667899999999999999998877789998888877


Q ss_pred             HHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccc---cCC
Q 042809           79 KEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRN---EGL  149 (241)
Q Consensus        79 ~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~---~~~  149 (241)
                      .|+      ||++|++||||||+||+++.++.+||+|||++........    ........||+.|+|||++.+   ..+
T Consensus       111 ~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~----~~~~~~~~gt~~y~APE~l~~~~~~~~  186 (276)
T d1uwha_         111 RQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSG----SHQFEQLSGSILWMAPEVIRMQDKNPY  186 (276)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSCC----------------CCCCGGGCCHHHHTTCSSCCC
T ss_pred             HHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEccccceeeccccCC----cccccccccCcccCCHHHHhcccCCCC
Confidence            755      7999999999999999999999999999999976543211    122234568999999999964   347


Q ss_pred             CchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcC--CCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhcC
Q 042809          150 DFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSN--EKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLNH  227 (241)
Q Consensus       150 ~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~  227 (241)
                      +.++||||||+++|||+||+.||.+................  .....+..+++.+.+|+.+||+.+|.+|||+++++++
T Consensus       187 ~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~  266 (276)
T d1uwha_         187 SFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILAS  266 (276)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTSCCCCGGGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCcchhccccchHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence            89999999999999999999999765433222221111111  1123456678899999999999999999999999986


Q ss_pred             C
Q 042809          228 T  228 (241)
Q Consensus       228 p  228 (241)
                      .
T Consensus       267 L  267 (276)
T d1uwha_         267 I  267 (276)
T ss_dssp             H
T ss_pred             H
Confidence            3


No 26 
>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=2e-49  Score=304.68  Aligned_cols=218  Identities=23%  Similarity=0.347  Sum_probs=177.4

Q ss_pred             CCCCCcEEEEEeccch-HHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHh-CCCCCHHHH
Q 042809            2 NKGTGALFVVKSAESE-AGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKF-GGTLDAGVI   74 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~-~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~   74 (241)
                      ++.+|+.||||++... ...+.+.+|+.+|++++||||++     ..++..++|||||++|+|.+++... ...+++..+
T Consensus        38 ~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~  117 (287)
T d1opja_          38 WKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVL  117 (287)
T ss_dssp             EGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHH
T ss_pred             ECCCCeEEEEEEECCccchHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeecccCcchHHHhhhccccchHHHHH
Confidence            4678999999998743 34677999999999999999998     6778899999999999999999864 456788777


Q ss_pred             HHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccccC
Q 042809           75 RLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRNEG  148 (241)
Q Consensus        75 ~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~  148 (241)
                      ..++.|+      ||++|++||||||+||+++.++.+||+|||++.......     ........|++.|+|||.+.+..
T Consensus       118 ~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~-----~~~~~~~~g~~~y~aPE~~~~~~  192 (287)
T d1opja_         118 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT-----YTAHAGAKFPIKWTAPESLAYNK  192 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSS-----SEEETTEEECGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccceeecCCCC-----ceeeccccccccccChHHHcCCC
Confidence            7666654      899999999999999999999999999999997654311     11222344788999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhc
Q 042809          149 LDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLN  226 (241)
Q Consensus       149 ~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~  226 (241)
                      ++.++||||||+++|+|++|..|+.....  .............+..+..+++++.+|+.+||+.+|.+|||++++++
T Consensus       193 ~~~k~DiwS~Gv~l~ell~~~~p~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei~~  268 (287)
T d1opja_         193 FSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ  268 (287)
T ss_dssp             CSHHHHHHHHHHHHHHHHTTSCCSSTTCC--HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCchhhhhhHHHHHHHHHhCCCCCCCcch--HHHHHHHHhcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence            99999999999999999996666543222  22233333445566777888999999999999999999999999976


No 27 
>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=5.2e-49  Score=303.97  Aligned_cols=217  Identities=22%  Similarity=0.326  Sum_probs=168.6

Q ss_pred             cEEEEEeccc---hHHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHHHHHHH
Q 042809            7 ALFVVKSAES---EAGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGVIRLYT   78 (241)
Q Consensus         7 ~~vaiK~~~~---~~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~   78 (241)
                      ..||||.+..   +...+.+.+|+.+|++++||||++     ..++.+++|||||++|+|.+++......+++..+..++
T Consensus        55 ~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~  134 (299)
T d1jpaa_          55 IFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGML  134 (299)
T ss_dssp             EEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHH
T ss_pred             EEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEecCCCcceeeeccccCCCCHHHHHHHH
Confidence            4689998753   445678999999999999999998     66788999999999999999999877788988888777


Q ss_pred             HHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccccCCCch
Q 042809           79 KEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRNEGLDFA  152 (241)
Q Consensus        79 ~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~  152 (241)
                      .|+      ||++|++||||||+||+++.++.+||+|||++............ .......||+.|+|||.+.+..++.+
T Consensus       135 ~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~  213 (299)
T d1jpaa_         135 RGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTY-TSALGGKIPIRWTAPEAIQYRKFTSA  213 (299)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC------------------------CGGGSCHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHhhCCCccCccccceEEECCCCcEEECCcccceEccCCCCccee-eecccccCCccccCHHHHhcCCCCcc
Confidence            755      79999999999999999999999999999999865442221111 11122347899999999999999999


Q ss_pred             hhHHHHHHHHHHHHh-CCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhcC
Q 042809          153 TDIWSLGCMVIEMAT-GRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLNH  227 (241)
Q Consensus       153 ~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~  227 (241)
                      +|||||||++|||+| |..||.+......   ......+..+..+..++..+.+|+.+||+.+|.+|||++++++.
T Consensus       214 sDvwS~Gvvl~el~t~g~~Pf~~~~~~~~---~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~  286 (299)
T d1jpaa_         214 SDVWSYGIVMWEVMSYGERPYWDMTNQDV---INAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNT  286 (299)
T ss_dssp             HHHHHHHHHHHHHHTTSCCTTTTCCHHHH---HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             cccccchHHHHHHHhCCCCCCCCCCHHHH---HHHHHcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence            999999999999998 8999987644333   33333455566777888999999999999999999999998765


No 28 
>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.2e-49  Score=300.25  Aligned_cols=216  Identities=21%  Similarity=0.350  Sum_probs=168.9

Q ss_pred             CCCcEEEEEeccch-HHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHHHHHH
Q 042809            4 GTGALFVVKSAESE-AGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGVIRLY   77 (241)
Q Consensus         4 ~~~~~vaiK~~~~~-~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~   77 (241)
                      .++..||||.++.. ...+.+.+|++++++++||||++     ..++..++||||+++|+|.+++......+++..+..+
T Consensus        27 ~~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~i  106 (263)
T d1sm2a_          27 LNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGM  106 (263)
T ss_dssp             TTTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCCCHHHHHHH
T ss_pred             CCCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecCCCcHHHHhhccccCCCHHHHHHH
Confidence            35778999998743 34577999999999999999998     5678899999999999999999887777888877777


Q ss_pred             HHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccccCCCc
Q 042809           78 TKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRNEGLDF  151 (241)
Q Consensus        78 ~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~  151 (241)
                      +.|+      ||+++++||||||+||+++.++.+||+|||++........     .......||+.|+|||++.+..++.
T Consensus       107 ~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~-----~~~~~~~gt~~y~aPE~l~~~~~~~  181 (263)
T d1sm2a_         107 CLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY-----TSSTGTKFPVKWASPEVFSFSRYSS  181 (263)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC-----------------------CTTSCCHHHHTTCCCCH
T ss_pred             HHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchheeccCCCc-----eeecceecCcccCChHHhcCCCCCc
Confidence            7655      7999999999999999999999999999999976543211     1122345889999999999999999


Q ss_pred             hhhHHHHHHHHHHHHh-CCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhcC
Q 042809          152 ATDIWSLGCMVIEMAT-GRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLNH  227 (241)
Q Consensus       152 ~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~  227 (241)
                      ++||||||+++|||+| |.+||........   ......+.....|...++++.+|+.+||+.+|.+|||+++++++
T Consensus       182 k~DVwS~Gvil~el~t~~~~~~~~~~~~~~---~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~Rps~~~il~~  255 (263)
T d1sm2a_         182 KSDVWSFGVLMWEVFSEGKIPYENRSNSEV---VEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQ  255 (263)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCTTCSCCHHHH---HHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             hhhhcchHHHHHHHHHCCCCCCCCCCHHHH---HHHHHhcCCCCCccccCHHHHHHHHHHccCCHhHCcCHHHHHHH
Confidence            9999999999999999 5666655433332   22333345556677788899999999999999999999999875


No 29 
>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.3e-49  Score=303.33  Aligned_cols=228  Identities=26%  Similarity=0.369  Sum_probs=176.2

Q ss_pred             CCCCCcEEEEEeccchH----HHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHH-HhCCCCCH
Q 042809            2 NKGTGALFVVKSAESEA----GVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAE-KFGGTLDA   71 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~~----~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~   71 (241)
                      |+.+|+.||||++..+.    ..+.+.+|++++++++||||++     ..++++|+||||+.+ ++.+++. .....+++
T Consensus        23 ~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e~~~~-~~~~~~~~~~~~~l~e  101 (298)
T d1gz8a_          23 NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPL  101 (298)
T ss_dssp             ETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSE-EHHHHHHHTTTTCCCH
T ss_pred             ECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEeecCC-chhhhhhhhcccCCCH
Confidence            67899999999986432    3467889999999999999998     678899999999975 5555554 44567899


Q ss_pred             HHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCccccc
Q 042809           72 GVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLR  145 (241)
Q Consensus        72 ~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~  145 (241)
                      ..++.++.|+      ||++|++||||||+||+++.++.+||+|||.+.......      .......|++.|+|||.+.
T Consensus       102 ~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~------~~~~~~~gt~~y~apE~~~  175 (298)
T d1gz8a_         102 PLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV------RTYTHEVVTLWYRAPEILL  175 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCS------BCTTCCBCCCTTCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcceeccCCc------ccceeecccceeeehhhhc
Confidence            9998888766      799999999999999999999999999999997654311      1223346899999999987


Q ss_pred             ccC-CCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCC--------------CC-----------Chhh
Q 042809          146 NEG-LDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKP--------------HF-----------PTQF  199 (241)
Q Consensus       146 ~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~--------------~~-----------~~~~  199 (241)
                      ... ++.++|+||+|+++|+|++|+.||.+...................              ..           ....
T Consensus       176 ~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (298)
T d1gz8a_         176 GCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPL  255 (298)
T ss_dssp             TCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTC
T ss_pred             cccCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhccccccccccccccccccccchhhhccCC
Confidence            655 478999999999999999999999765433322222111111000              00           1234


Q ss_pred             HHHHHHHHHHhhccCCCCCCChHHHhcCCCCCCCCcc
Q 042809          200 FKKVLDFLAKCLERKPEKRWSAEELLNHTFISGNAKK  236 (241)
Q Consensus       200 ~~~~~~li~~~l~~~p~~Rps~~~~l~~p~~~~~~~~  236 (241)
                      +.++.+|+++||..||.+|||++|+++||||++-.+.
T Consensus       256 s~~~~dll~~mL~~dP~~R~t~~ell~H~ff~~~~~p  292 (298)
T d1gz8a_         256 DEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKP  292 (298)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTCCCC
T ss_pred             CHHHHHHHHHHccCChhHCcCHHHHhCCHhhccCCCC
Confidence            5789999999999999999999999999999876543


No 30 
>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.4e-49  Score=302.23  Aligned_cols=220  Identities=22%  Similarity=0.361  Sum_probs=176.6

Q ss_pred             CCCcEEEEEeccch-HHHHHHHHHHHHHhhcCCCcccc----cCCceeeeeecccCCCCHHHHHHHh-CCCCCHHHHHHH
Q 042809            4 GTGALFVVKSAESE-AGVQALRNEAEIRQSLNSPNIGR----NGEKTVNIFMEYMAGGSLLDVAEKF-GGTLDAGVIRLY   77 (241)
Q Consensus         4 ~~~~~vaiK~~~~~-~~~~~~~~e~~~l~~l~h~~i~~----~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~   77 (241)
                      .++..||||.++.. ...+.+.+|+.++.+++||||++    ..++..++||||+++|+|.+++... +..+++..+..+
T Consensus        35 ~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i  114 (272)
T d1qpca_          35 NGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDM  114 (272)
T ss_dssp             TTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHH
T ss_pred             CCCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeeccCCeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHH
Confidence            35788999998743 34577999999999999999999    4456789999999999999977543 235788777777


Q ss_pred             HHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccccCCCc
Q 042809           78 TKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRNEGLDF  151 (241)
Q Consensus        78 ~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~  151 (241)
                      +.|+      ||+++++||||||+||+++.++.+||+|||++.......     ........|++.|+|||.+.+..++.
T Consensus       115 ~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~-----~~~~~~~~gt~~y~APE~~~~~~~~~  189 (272)
T d1qpca_         115 AAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE-----YTAREGAKFPIKWTAPEAINYGTFTI  189 (272)
T ss_dssp             HHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC-----EECCTTCCCCTTTSCHHHHHHCEECH
T ss_pred             HHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceEEccCCc-----cccccccCCcccccChHHHhCCCCCc
Confidence            6655      799999999999999999999999999999997654311     11223345889999999999888999


Q ss_pred             hhhHHHHHHHHHHHHhCC-CCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhc--CC
Q 042809          152 ATDIWSLGCMVIEMATGR-PPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLN--HT  228 (241)
Q Consensus       152 ~~Di~slG~~l~~l~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~--~p  228 (241)
                      ++||||||+++|||+||. +|+.....   .........+..+..|..+++++.+|+++||+.+|++|||++++++  ++
T Consensus       190 ~sDvwS~Gvvl~ellt~~~~~~~~~~~---~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~  266 (272)
T d1qpca_         190 KSDVWSFGILLTEIVTHGRIPYPGMTN---PEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLED  266 (272)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCSSTTCCH---HHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHhCCCCCCCCCCH---HHHHHHHHhcCCCCCcccChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhh
Confidence            999999999999999954 55544322   2233333445666677888999999999999999999999999988  67


Q ss_pred             CCC
Q 042809          229 FIS  231 (241)
Q Consensus       229 ~~~  231 (241)
                      ||.
T Consensus       267 ~ft  269 (272)
T d1qpca_         267 FFT  269 (272)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            774


No 31 
>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=6e-50  Score=305.85  Aligned_cols=214  Identities=21%  Similarity=0.404  Sum_probs=175.2

Q ss_pred             CCCCCcEEEEEeccchH--------HHHHHHHHHHHHhhcC--CCcccc-----cCCceeeeeecccCC-CCHHHHHHHh
Q 042809            2 NKGTGALFVVKSAESEA--------GVQALRNEAEIRQSLN--SPNIGR-----NGEKTVNIFMEYMAG-GSLLDVAEKF   65 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~~--------~~~~~~~e~~~l~~l~--h~~i~~-----~~~~~~~lv~e~~~~-~~L~~~l~~~   65 (241)
                      ++.||+.||||.+....        ...++.+|+.+++++.  ||||++     ...+..++||||+.+ +++.+++.. 
T Consensus        25 ~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~~~lv~e~~~~~~~l~~~~~~-  103 (273)
T d1xwsa_          25 RVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITE-  103 (273)
T ss_dssp             ETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEEEECCSSEEEHHHHHHH-
T ss_pred             ECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCeEEEEEEeccCcchHHHHHhc-
Confidence            67899999999976432        1234679999999997  899998     678899999999975 688888876 


Q ss_pred             CCCCCHHHHHHHHHHH------hhcCCccccCCCCCcEEeecC-CCeeecCCCcchhhcccccCCccccccccccCcccc
Q 042809           66 GGTLDAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSH-GDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLW  138 (241)
Q Consensus        66 ~~~~~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~-~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (241)
                      ...+++..++.++.|+      ||++|++||||||+||+++.+ +.+||+|||++.....        .......||+.|
T Consensus       104 ~~~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~--------~~~~~~~GT~~y  175 (273)
T d1xwsa_         104 RGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKD--------TVYTDFDGTRVY  175 (273)
T ss_dssp             HCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCS--------SCBCCCCSCGGG
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccccceeccc--------ccccccccCCCc
Confidence            4678888888887765      799999999999999999865 7899999999975433        122345699999


Q ss_pred             cCcccccccCC-CchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCC
Q 042809          139 MAPEVLRNEGL-DFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEK  217 (241)
Q Consensus       139 ~aPE~~~~~~~-~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  217 (241)
                      +|||.+.+..+ +.++||||+||++|+|++|+.||....     ...     .....++..+++++.+||++||+.||.+
T Consensus       176 ~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~-----~i~-----~~~~~~~~~~s~~~~~li~~~L~~dp~~  245 (273)
T d1xwsa_         176 SPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE-----EII-----RGQVFFRQRVSSECQHLIRWCLALRPSD  245 (273)
T ss_dssp             SCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-----HHH-----HCCCCCSSCCCHHHHHHHHHHTCSSGGG
T ss_pred             CCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCch-----HHh-----hcccCCCCCCCHHHHHHHHHHccCCHhH
Confidence            99999987665 567899999999999999999997632     111     1234456678899999999999999999


Q ss_pred             CCChHHHhcCCCCCCCC
Q 042809          218 RWSAEELLNHTFISGNA  234 (241)
Q Consensus       218 Rps~~~~l~~p~~~~~~  234 (241)
                      |||++|+++||||++..
T Consensus       246 R~s~~eil~hp~~~~~~  262 (273)
T d1xwsa_         246 RPTFEEIQNHPWMQDVL  262 (273)
T ss_dssp             SCCHHHHHTSGGGSSCC
T ss_pred             CcCHHHHhcCHhhCCCC
Confidence            99999999999998754


No 32 
>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.4e-48  Score=302.08  Aligned_cols=226  Identities=24%  Similarity=0.328  Sum_probs=174.1

Q ss_pred             CCCC-CcEEEEEeccch----HHHHHHHHHHHHHhhc---CCCcccc----------cCCceeeeeecccCCCCHHHHHH
Q 042809            2 NKGT-GALFVVKSAESE----AGVQALRNEAEIRQSL---NSPNIGR----------NGEKTVNIFMEYMAGGSLLDVAE   63 (241)
Q Consensus         2 ~~~~-~~~vaiK~~~~~----~~~~~~~~e~~~l~~l---~h~~i~~----------~~~~~~~lv~e~~~~~~L~~~l~   63 (241)
                      |+++ ++.||||.+...    .....+.+|+.+++.|   +||||++          ......++++||+.++++.....
T Consensus        28 ~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  107 (305)
T d1blxa_          28 DLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDK  107 (305)
T ss_dssp             ETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCSCBHHHHHHH
T ss_pred             EECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccccCceEEEEEEeccCCchhhhhh
Confidence            4444 678999997632    2233466777777666   7999987          24568999999998877766666


Q ss_pred             HhCCCCCHHHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCccc
Q 042809           64 KFGGTLDAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQL  137 (241)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (241)
                      .....+++..++.++.|+      ||++|++||||||+||+++.++.+||+|||.+......       .......||+.
T Consensus       108 ~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~~~-------~~~~~~~gT~~  180 (305)
T d1blxa_         108 VPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ-------MALTSVVVTLW  180 (305)
T ss_dssp             SCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGG-------GGGCCCCCCCT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecchhhhhhhccc-------ccCCCcccChh
Confidence            556778888887777655      79999999999999999999999999999998754331       22345668999


Q ss_pred             ccCcccccccCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCC-----------------------CCC
Q 042809          138 WMAPEVLRNEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNE-----------------------KPH  194 (241)
Q Consensus       138 ~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~-----------------------~~~  194 (241)
                      |+|||.+.+..++.++||||+||++|+|++|+.||.+.................                       ...
T Consensus       181 Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (305)
T d1blxa_         181 YRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEK  260 (305)
T ss_dssp             TCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGG
T ss_pred             hcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhh
Confidence            999999999999999999999999999999999998765433332222211100                       001


Q ss_pred             CChhhHHHHHHHHHHhhccCCCCCCChHHHhcCCCCCCCC
Q 042809          195 FPTQFFKKVLDFLAKCLERKPEKRWSAEELLNHTFISGNA  234 (241)
Q Consensus       195 ~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~p~~~~~~  234 (241)
                      .....++.+.+|+++||+.||.+|||++|+++||||++-.
T Consensus       261 ~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~Hpff~~i~  300 (305)
T d1blxa_         261 FVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLE  300 (305)
T ss_dssp             TCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCC
T ss_pred             ccccCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhcCch
Confidence            2334567899999999999999999999999999998653


No 33 
>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.6e-48  Score=304.86  Aligned_cols=216  Identities=23%  Similarity=0.280  Sum_probs=173.5

Q ss_pred             CcEEEEEeccch---HHHHHHHHHHHHHhhc-CCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCC---------
Q 042809            6 GALFVVKSAESE---AGVQALRNEAEIRQSL-NSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGG---------   67 (241)
Q Consensus         6 ~~~vaiK~~~~~---~~~~~~~~e~~~l~~l-~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~---------   67 (241)
                      +..||+|.+...   .....+.+|+.++.++ +|||||+     ...+.+|+|||||++|+|.+++.....         
T Consensus        67 ~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~  146 (325)
T d1rjba_          67 SIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEY  146 (325)
T ss_dssp             EEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC-------
T ss_pred             eeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhh
Confidence            347899987532   3345688999999998 7999998     677889999999999999999986432         


Q ss_pred             -------------CCCHHHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccc
Q 042809           68 -------------TLDAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQS  128 (241)
Q Consensus        68 -------------~~~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  128 (241)
                                   .+++..+..++.|+      ||+++++||||||+||+++.++.+||+|||++........    ...
T Consensus       147 ~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~----~~~  222 (325)
T d1rjba_         147 ENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSN----YVV  222 (325)
T ss_dssp             --------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTT----SEE
T ss_pred             ccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCchhccccccCCeEEEeeccccccccCCCc----eee
Confidence                         36777777776655      7999999999999999999999999999999976544211    112


Q ss_pred             cccccCcccccCcccccccCCCchhhHHHHHHHHHHHHh-CCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHH
Q 042809          129 WQSIGGTQLWMAPEVLRNEGLDFATDIWSLGCMVIEMAT-GRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFL  207 (241)
Q Consensus       129 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  207 (241)
                      .....||+.|+|||.+.+..++.++|||||||++|||+| |..||.+......  ..........+..|...++++.+||
T Consensus       223 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~~--~~~~~~~~~~~~~p~~~~~~l~~li  300 (325)
T d1rjba_         223 RGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDAN--FYKLIQNGFKMDQPFYATEEIYIIM  300 (325)
T ss_dssp             ETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH--HHHHHHTTCCCCCCTTCCHHHHHHH
T ss_pred             eccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCHHHH--HHHHHhcCCCCCCCCcCCHHHHHHH
Confidence            234457999999999999999999999999999999998 8999976543332  2223334456677788899999999


Q ss_pred             HHhhccCCCCCCChHHHhcC
Q 042809          208 AKCLERKPEKRWSAEELLNH  227 (241)
Q Consensus       208 ~~~l~~~p~~Rps~~~~l~~  227 (241)
                      .+||+.+|.+|||++++++|
T Consensus       301 ~~cl~~dP~~RPt~~ei~~~  320 (325)
T d1rjba_         301 QSCWAFDSRKRPSFPNLTSF  320 (325)
T ss_dssp             HHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHcCCChhHCcCHHHHHHH
Confidence            99999999999999999876


No 34 
>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.4e-48  Score=293.26  Aligned_cols=216  Identities=23%  Similarity=0.346  Sum_probs=180.9

Q ss_pred             CCCcEEEEEeccch-HHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHHHHHH
Q 042809            4 GTGALFVVKSAESE-AGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGVIRLY   77 (241)
Q Consensus         4 ~~~~~vaiK~~~~~-~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~   77 (241)
                      +++..||||.++.. ...+.+.+|+.++.+++||||++     ..++.+++||||+++|+|.+++......+++..+..+
T Consensus        26 ~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~g~l~~~~~~~~~~~~~~~~~~i  105 (258)
T d1k2pa_          26 RGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEM  105 (258)
T ss_dssp             TTTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCTTEEHHHHHHSGGGCCCHHHHHHH
T ss_pred             CCCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccCCCcHHHhhhccccCCcHHHHHHH
Confidence            36788999998743 34577999999999999999998     6678899999999999999998887777888887777


Q ss_pred             HHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccccCCCc
Q 042809           78 TKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRNEGLDF  151 (241)
Q Consensus        78 ~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~  151 (241)
                      +.|+      ||++|++||||||+||+++.++.+||+|||++........     .......+|+.|+|||.+.+..++.
T Consensus       106 ~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~  180 (258)
T d1k2pa_         106 CKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY-----TSSVGSKFPVRWSPPEVLMYSKFSS  180 (258)
T ss_dssp             HHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSC-----CCCCCSCCCGGGCCHHHHHHCCCCH
T ss_pred             HHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhheeccCCCc-----eeecccCCCCCcCCcHHhcCCCCCc
Confidence            7655      7999999999999999999999999999999975543211     1122345889999999999999999


Q ss_pred             hhhHHHHHHHHHHHHh-CCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhcC
Q 042809          152 ATDIWSLGCMVIEMAT-GRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLNH  227 (241)
Q Consensus       152 ~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~  227 (241)
                      ++||||||+++|||+| |+.||.+.......   .....+.....|...++.+.+||++||+.+|.+|||++++++|
T Consensus       181 ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~---~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  254 (258)
T d1k2pa_         181 KSDIWAFGVLMWEIYSLGKMPYERFTNSETA---EHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSN  254 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCTTTTSCHHHHH---HHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             ceeecccchhhHhHHhcCCCCCCCCCHHHHH---HHHHhCCCCCCcccccHHHHHHHHHHccCCHhHCcCHHHHHHH
Confidence            9999999999999998 89999876544333   3333455666777888999999999999999999999999986


No 35 
>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00  E-value=1.1e-48  Score=299.79  Aligned_cols=226  Identities=24%  Similarity=0.345  Sum_probs=169.8

Q ss_pred             CCCCCcEEEEEeccc-----hHHHHHHHHHHHHHhhcCCCcccc---------cCCceeeeeecccCCCCHHHHHHHhCC
Q 042809            2 NKGTGALFVVKSAES-----EAGVQALRNEAEIRQSLNSPNIGR---------NGEKTVNIFMEYMAGGSLLDVAEKFGG   67 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~---------~~~~~~~lv~e~~~~~~L~~~l~~~~~   67 (241)
                      |+.+|+.||||++..     ......+.+|+++++.++||||++         .....+|+||||++|++|.+++... +
T Consensus        28 ~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~~lvmE~~~g~~L~~~~~~~-~  106 (277)
T d1o6ya_          28 DLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-G  106 (277)
T ss_dssp             ETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEEEEEEECCCEEEHHHHHHHH-C
T ss_pred             ECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceEEEEEECCCCCEehhhhccc-C
Confidence            678999999999752     344567999999999999999998         1234589999999999999999874 5


Q ss_pred             CCCHHHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCc
Q 042809           68 TLDAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAP  141 (241)
Q Consensus        68 ~~~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aP  141 (241)
                      .+++..+..++.|+      ||++|++||||||+||+++.++..+++|||.+........   .........||+.|+||
T Consensus       107 ~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~---~~~~~~~~~Gt~~Y~aP  183 (277)
T d1o6ya_         107 PMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGN---SVTQTAAVIGTAQYLSP  183 (277)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTCEECC-------------------TTCCH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhhhhhhhccccc---cccccccccCcccccCH
Confidence            78888888888766      7999999999999999999999999999998865433211   11223445689999999


Q ss_pred             ccccccCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCCh
Q 042809          142 EVLRNEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSA  221 (241)
Q Consensus       142 E~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  221 (241)
                      |.+.+..++.++||||+|+++|+|+||+.||.+........................+++++.++|++||+.||.+||+.
T Consensus       184 E~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~s  263 (277)
T d1o6ya_         184 EQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQT  263 (277)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCSS
T ss_pred             HHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHccCCHhHCHhH
Confidence            99999999999999999999999999999998754433222221111111123345678899999999999999999955


Q ss_pred             HHHhcCCCCC
Q 042809          222 EELLNHTFIS  231 (241)
Q Consensus       222 ~~~l~~p~~~  231 (241)
                      .+.+.|+|.+
T Consensus       264 a~~l~~~l~r  273 (277)
T d1o6ya_         264 AAEMRADLVR  273 (277)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555566654


No 36 
>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.1e-48  Score=294.22  Aligned_cols=216  Identities=24%  Similarity=0.342  Sum_probs=170.3

Q ss_pred             CCCcEEEEEecc---chHHHHHHHHHHHHHhhcCCCcccc----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHHHHH
Q 042809            4 GTGALFVVKSAE---SEAGVQALRNEAEIRQSLNSPNIGR----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGVIRL   76 (241)
Q Consensus         4 ~~~~~vaiK~~~---~~~~~~~~~~e~~~l~~l~h~~i~~----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~   76 (241)
                      +++..||||.++   .+...+.+.+|+.++++++||||++    ..++.+|+||||+++|+|.+++......+++..+..
T Consensus        33 ~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~  112 (273)
T d1mp8a_          33 NPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLIL  112 (273)
T ss_dssp             -CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHH
T ss_pred             ceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCeEEEEEEeccCCcHHhhhhccCCCCCHHHHHH
Confidence            345679999876   3445677999999999999999998    456789999999999999999888777889988888


Q ss_pred             HHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccccCCC
Q 042809           77 YTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRNEGLD  150 (241)
Q Consensus        77 ~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~  150 (241)
                      ++.|+      ||++|++||||||+||+++.++.+||+|||++........     .......||+.|+|||.+.+..++
T Consensus       113 ~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~-----~~~~~~~gt~~y~apE~l~~~~~~  187 (273)
T d1mp8a_         113 YAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTY-----YKASKGKLPIKWMAPESINFRRFT  187 (273)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC------------------------CCGGGCCHHHHHHCCCS
T ss_pred             HHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhheeccCCcc-----eeccceecCcccchhhHhccCCCC
Confidence            87765      7999999999999999999999999999999976543211     112334578999999999999999


Q ss_pred             chhhHHHHHHHHHHHHh-CCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhcC
Q 042809          151 FATDIWSLGCMVIEMAT-GRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLNH  227 (241)
Q Consensus       151 ~~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~  227 (241)
                      .++||||||+++|||++ |.+||.+.........   ...+..+..+..+++.+.+||.+||+.+|.+|||+++++++
T Consensus       188 ~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~---i~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~  262 (273)
T d1mp8a_         188 SASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGR---IENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ  262 (273)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHH---HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CccccccchHHHHHHHhcCCCCCCCCCHHHHHHH---HHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence            99999999999999998 8999987655443322   23355567788899999999999999999999999999876


No 37 
>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.4e-48  Score=300.57  Aligned_cols=231  Identities=24%  Similarity=0.321  Sum_probs=173.0

Q ss_pred             CCCCCcEEEEEeccch----HHHHHHHHHHHHHhhcCCCcccc-------------cCCceeeeeecccCCCCHHHHHHH
Q 042809            2 NKGTGALFVVKSAESE----AGVQALRNEAEIRQSLNSPNIGR-------------NGEKTVNIFMEYMAGGSLLDVAEK   64 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~----~~~~~~~~e~~~l~~l~h~~i~~-------------~~~~~~~lv~e~~~~~~L~~~l~~   64 (241)
                      |+.+|+.||||++..+    .....+.+|+.+|++++||||++             ...++.|+||||+.++.+. ....
T Consensus        31 ~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~~~-~~~~  109 (318)
T d3blha1          31 HRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAG-LLSN  109 (318)
T ss_dssp             ETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC----------CEEEEEECCCEEHHH-HHTC
T ss_pred             ECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccCceEEEEEeccCCCccc-hhhh
Confidence            6789999999997633    23466889999999999999987             2246789999999766554 4444


Q ss_pred             hCCCCCHHHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccc
Q 042809           65 FGGTLDAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLW  138 (241)
Q Consensus        65 ~~~~~~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (241)
                      ....+.+..++.++.|+      ||++|++||||||+||+++.++.+||+|||++..........  ........||+.|
T Consensus       110 ~~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~~--~~~~~~~~gT~~Y  187 (318)
T d3blha1         110 VLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQ--PNRYTNRVVTLWY  187 (318)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCC-------CCCCCSCCSCGGG
T ss_pred             cccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEeeecceeeecccccccc--cccccceecCHHH
Confidence            45678888888777765      799999999999999999999999999999997554322111  1222345689999


Q ss_pred             cCccccccc-CCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCC---------------------
Q 042809          139 MAPEVLRNE-GLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFP---------------------  196 (241)
Q Consensus       139 ~aPE~~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  196 (241)
                      +|||.+.+. .++.++||||+||++|+|++|+.||.+..................+...                     
T Consensus       188 ~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (318)
T d3blha1         188 RPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRK  267 (318)
T ss_dssp             CCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSCCBC
T ss_pred             hhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCChhhccccchhhhhhhhccccccccc
Confidence            999998765 5889999999999999999999999876554444443333222211110                     


Q ss_pred             -------hhhHHHHHHHHHHhhccCCCCCCChHHHhcCCCCCCCCc
Q 042809          197 -------TQFFKKVLDFLAKCLERKPEKRWSAEELLNHTFISGNAK  235 (241)
Q Consensus       197 -------~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~p~~~~~~~  235 (241)
                             ...++++.+||.+||+.||++|||++|+++||||+....
T Consensus       268 ~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~Hpff~~~p~  313 (318)
T d3blha1         268 VKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPM  313 (318)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGSSSSC
T ss_pred             chhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcChhhccCCC
Confidence                   012457789999999999999999999999999986554


No 38 
>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=4.4e-47  Score=291.37  Aligned_cols=214  Identities=21%  Similarity=0.268  Sum_probs=168.6

Q ss_pred             cEEEEEeccc---hHHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHHHHHHH
Q 042809            7 ALFVVKSAES---EAGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGVIRLYT   78 (241)
Q Consensus         7 ~~vaiK~~~~---~~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~   78 (241)
                      ..||||.+..   +.....+.+|+.++++++||||++     ...+..++||||+.+++|.+++......+++..+..++
T Consensus        37 ~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~  116 (283)
T d1mqba_          37 VPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGML  116 (283)
T ss_dssp             EEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHH
T ss_pred             EEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEEEEEecccCcchhhhhcccccccHHHHHHHH
Confidence            5799998763   344567899999999999999998     56788999999999999999998877888888887777


Q ss_pred             HHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccccCCCch
Q 042809           79 KEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRNEGLDFA  152 (241)
Q Consensus        79 ~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~  152 (241)
                      .|+      ||+++++||||||+||+++.++.+||+|||++..........   .......||+.|+|||.+.+..++.+
T Consensus       117 ~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~---~~~~~~~gt~~Y~APE~l~~~~~~~~  193 (283)
T d1mqba_         117 RGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAT---YTTSGGKIPIRWTAPEAISYRKFTSA  193 (283)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC--------------------CCCGGGSCHHHHHSCCCCHH
T ss_pred             HHHHHhhhhccccccccCccccceEEECCCCeEEEcccchhhcccCCCccc---eEeccCCCCccccCHHHHccCCCCCc
Confidence            655      799999999999999999999999999999997654321111   11223457899999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCC-ccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhc
Q 042809          153 TDIWSLGCMVIEMATGRPPW-GDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLN  226 (241)
Q Consensus       153 ~Di~slG~~l~~l~~g~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~  226 (241)
                      +||||||+++|||+++..|+ .....   .........+..+..+...+..+.+|+.+||+.+|.+|||+.++++
T Consensus       194 sDI~S~Gvil~el~t~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~  265 (283)
T d1mqba_         194 SDVWSFGIVMWEVMTYGERPYWELSN---HEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVS  265 (283)
T ss_dssp             HHHHHHHHHHHHHHTTSCCTTTTCCH---HHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             ccccccHHHHHHHHhCCCCccccCCH---HHHHHHHhccCCCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHH
Confidence            99999999999999965554 43322   2333444455666777888899999999999999999999999976


No 39 
>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.3e-47  Score=291.44  Aligned_cols=222  Identities=23%  Similarity=0.363  Sum_probs=173.9

Q ss_pred             CCcEEEEEeccch-HHHHHHHHHHHHHhhcCCCcccc----cCCceeeeeecccCCCCHHHHHHHh-CCCCCHHHHHHHH
Q 042809            5 TGALFVVKSAESE-AGVQALRNEAEIRQSLNSPNIGR----NGEKTVNIFMEYMAGGSLLDVAEKF-GGTLDAGVIRLYT   78 (241)
Q Consensus         5 ~~~~vaiK~~~~~-~~~~~~~~e~~~l~~l~h~~i~~----~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~   78 (241)
                      ++..||||.+... ...+.+.+|+.++.+++||||++    ..++..++||||+++|+|..++... ...+++..+..++
T Consensus        40 ~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~  119 (285)
T d1fmka3          40 GTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMA  119 (285)
T ss_dssp             TTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHH
T ss_pred             CCCEEEEEEECcccCCHHHHHHHHHHHHhcccCCEeEEEEEEecCCeEEEEEecCCCchhhhhhhcccccchHHHHHHHH
Confidence            3467999998743 33567999999999999999998    4456689999999999999988753 3568888888877


Q ss_pred             HHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccccCCCch
Q 042809           79 KEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRNEGLDFA  152 (241)
Q Consensus        79 ~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~  152 (241)
                      .|+      ||++|++||||||+||+++.++++||+|||++........     .......|++.|+|||.+.+..++.+
T Consensus       120 ~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~k  194 (285)
T d1fmka3         120 AQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY-----TARQGAKFPIKWTAPEAALYGRFTIK  194 (285)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC-------------------CCGGGSCHHHHHHCCCCHH
T ss_pred             HHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhhccCCCc-----eeeccccccccccChHHHhCCCCCcH
Confidence            765      7999999999999999999999999999999976543211     11223458999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCC-CccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhc--CCC
Q 042809          153 TDIWSLGCMVIEMATGRPP-WGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLN--HTF  229 (241)
Q Consensus       153 ~Di~slG~~l~~l~~g~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~--~p~  229 (241)
                      +||||||+++|||++|..| +......   ............+.+..+++.+.+++.+||+.+|++|||+++++.  ++|
T Consensus       195 sDI~S~Giil~el~t~~~p~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~  271 (285)
T d1fmka3         195 SDVWSFGILLTELTTKGRVPYPGMVNR---EVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY  271 (285)
T ss_dssp             HHHHHHHHHHHHHHTTTCCSSTTCCHH---HHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTT
T ss_pred             HhhhcchHHHHHHHhCCCCCCCCCCHH---HHHHHHHhcCCCCCCcccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhh
Confidence            9999999999999996555 4443322   223333345556678888999999999999999999999999988  889


Q ss_pred             CCCCC
Q 042809          230 ISGNA  234 (241)
Q Consensus       230 ~~~~~  234 (241)
                      |+...
T Consensus       272 ~~~~~  276 (285)
T d1fmka3         272 FTSTE  276 (285)
T ss_dssp             TSCSC
T ss_pred             hcCCC
Confidence            97654


No 40 
>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.9e-47  Score=299.91  Aligned_cols=221  Identities=24%  Similarity=0.347  Sum_probs=175.6

Q ss_pred             CCCCCcEEEEEeccc----hHHHHHHHHHHHHHhhcCCCcccc-----------cCCceeeeeecccCCCCHHHHHHHhC
Q 042809            2 NKGTGALFVVKSAES----EAGVQALRNEAEIRQSLNSPNIGR-----------NGEKTVNIFMEYMAGGSLLDVAEKFG   66 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~----~~~~~~~~~e~~~l~~l~h~~i~~-----------~~~~~~~lv~e~~~~~~L~~~l~~~~   66 (241)
                      |+.||+.||||++..    +...+.+.+|+.+|++++||||++           ....++|+||||+ +.+|..+.+.  
T Consensus        39 ~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~--  115 (346)
T d1cm8a_          39 DGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKH--  115 (346)
T ss_dssp             ETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHHH--
T ss_pred             ECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccceEEEEEecc-cccHHHHHHh--
Confidence            678999999999863    344677899999999999999998           1234689999999 6788888775  


Q ss_pred             CCCCHHHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccC
Q 042809           67 GTLDAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMA  140 (241)
Q Consensus        67 ~~~~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  140 (241)
                      ..+++..++.++.|+      ||++|++||||||+||+++.++.+|++|||++.....         ......|++.|+|
T Consensus       116 ~~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~---------~~~~~~~t~~y~a  186 (346)
T d1cm8a_         116 EKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADS---------EMTGYVVTRWYRA  186 (346)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCS---------SCCSSCSCGGGCC
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcccccccccccccceeccCC---------ccccccccccccC
Confidence            578999988888766      7999999999999999999999999999999975433         1234568999999


Q ss_pred             ccccccc-CCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcC------------------------CC---
Q 042809          141 PEVLRNE-GLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSN------------------------EK---  192 (241)
Q Consensus       141 PE~~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~------------------------~~---  192 (241)
                      ||.+.+. .++.++||||+||++|+|++|..||.+................                        ..   
T Consensus       187 PE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (346)
T d1cm8a_         187 PEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDF  266 (346)
T ss_dssp             THHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCG
T ss_pred             HHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccch
Confidence            9998764 5689999999999999999999999775433322221111110                        00   


Q ss_pred             CCCChhhHHHHHHHHHHhhccCCCCCCChHHHhcCCCCCCCC
Q 042809          193 PHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLNHTFISGNA  234 (241)
Q Consensus       193 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~p~~~~~~  234 (241)
                      .......++++.+||.+||..||.+|||++++|+||||+.-.
T Consensus       267 ~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~  308 (346)
T d1cm8a_         267 ASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLH  308 (346)
T ss_dssp             GGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC
T ss_pred             HHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcCC
Confidence            012234567899999999999999999999999999998644


No 41 
>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}
Probab=100.00  E-value=2.3e-47  Score=293.79  Aligned_cols=222  Identities=23%  Similarity=0.350  Sum_probs=171.6

Q ss_pred             CCCcEEEEEeccch----HHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHHH
Q 042809            4 GTGALFVVKSAESE----AGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGVI   74 (241)
Q Consensus         4 ~~~~~vaiK~~~~~----~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~   74 (241)
                      .+|+.||||++...    ...+.+.+|+.+|++++||||++     ..++..++++||+.++.+..+.. ....+++..+
T Consensus        24 ~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~~~~~~~~~~~~-~~~~l~~~~~  102 (286)
T d1ob3a_          24 NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDV-CEGGLESVTA  102 (286)
T ss_dssp             TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSEEHHHHHHT-STTCCCHHHH
T ss_pred             CCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEeehhhhHHHHHh-hcCCcchhhh
Confidence            47899999998642    23567999999999999999998     78889999999997655555544 4678999998


Q ss_pred             HHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCccccccc-
Q 042809           75 RLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRNE-  147 (241)
Q Consensus        75 ~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-  147 (241)
                      ..++.|+      ||+.|++||||||+||+++.++.+|++|||.+........      ......+++.|+|||.+.+. 
T Consensus       103 ~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~------~~~~~~~~~~y~~pE~~~~~~  176 (286)
T d1ob3a_         103 KSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR------KYTHEIVTLWYRAPDVLMGSK  176 (286)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------------CCCTTCCHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccceecccCcc------ccceecccchhhhHHHHhCCC
Confidence            8888765      7999999999999999999999999999999986543211      12234578999999999764 


Q ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCC-------------------------CCCChhhHHH
Q 042809          148 GLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEK-------------------------PHFPTQFFKK  202 (241)
Q Consensus       148 ~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~  202 (241)
                      .++.++||||+|+++|+|++|+.||.+..................                         .......++.
T Consensus       177 ~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  256 (286)
T d1ob3a_         177 KYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDES  256 (286)
T ss_dssp             SCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHH
T ss_pred             CCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhcccCCHH
Confidence            468999999999999999999999976543332222111111100                         0112345678


Q ss_pred             HHHHHHHhhccCCCCCCChHHHhcCCCCCC
Q 042809          203 VLDFLAKCLERKPEKRWSAEELLNHTFISG  232 (241)
Q Consensus       203 ~~~li~~~l~~~p~~Rps~~~~l~~p~~~~  232 (241)
                      +.+|+++||+.||++|||++|+++||||++
T Consensus       257 ~~dli~~~L~~dP~~R~s~~ell~Hp~f~~  286 (286)
T d1ob3a_         257 GIDLLSKMLKLDPNQRITAKQALEHAYFKE  286 (286)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHTSGGGGC
T ss_pred             HHHHHHHHccCChhHCcCHHHHhcCcccCc
Confidence            999999999999999999999999999974


No 42 
>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.5e-48  Score=299.94  Aligned_cols=226  Identities=26%  Similarity=0.477  Sum_probs=181.5

Q ss_pred             CCCCCcEEEEEeccch------HHHHHHHHHHHHHhhcCC-Ccccc-----cCCceeeeeecccCCCCHHHHHHHhCCCC
Q 042809            2 NKGTGALFVVKSAESE------AGVQALRNEAEIRQSLNS-PNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTL   69 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~------~~~~~~~~e~~~l~~l~h-~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~   69 (241)
                      ++.+|+.||||.+...      ...+.+.+|++++++++| |||++     ......++||||+.+|+|.+++... ..+
T Consensus        48 ~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~-~~~  126 (322)
T d1vzoa_          48 GHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQR-ERF  126 (322)
T ss_dssp             STTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHHH-SCC
T ss_pred             cCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCceeeeeecccccHHHHHHHhc-ccc
Confidence            4678999999987632      235678899999999987 79988     6778999999999999999999885 455


Q ss_pred             CHHHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCccc
Q 042809           70 DAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEV  143 (241)
Q Consensus        70 ~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~  143 (241)
                      .+..+..++.|+      ||++|++||||||+||+++.+|.+||+|||++........     .......|++.|+|||.
T Consensus       127 ~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~~-----~~~~~~~g~~~~~~pe~  201 (322)
T d1vzoa_         127 TEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADET-----ERAYDFCGTIEYMAPDI  201 (322)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGG-----GGGCGGGSCCTTCCHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeeccchhhhccccc-----ccccccccccccchhHH
Confidence            666666666544      7999999999999999999999999999999975533211     12234568999999999


Q ss_pred             cccc--CCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCC--
Q 042809          144 LRNE--GLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRW--  219 (241)
Q Consensus       144 ~~~~--~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp--  219 (241)
                      +.+.  .++.++|||||||++|+|++|..||.+..................+..+...++++.+|+.+||..||.+||  
T Consensus       202 ~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~l~~dP~~R~s~  281 (322)
T d1vzoa_         202 VRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGC  281 (322)
T ss_dssp             HTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTS
T ss_pred             hhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcccCCCCCcccCCHHHHHHHHHHcccCHHHcCCC
Confidence            9764  467899999999999999999999977654444444433343455667778899999999999999999999  


Q ss_pred             ---ChHHHhcCCCCCCC
Q 042809          220 ---SAEELLNHTFISGN  233 (241)
Q Consensus       220 ---s~~~~l~~p~~~~~  233 (241)
                         |++|+++||||++-
T Consensus       282 ~~~t~~eil~Hpff~~i  298 (322)
T d1vzoa_         282 GPRDADEIKEHLFFQKI  298 (322)
T ss_dssp             STTTHHHHHTSGGGTTC
T ss_pred             CcccHHHHHcCHhhcCC
Confidence               58999999999863


No 43 
>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.8e-47  Score=289.71  Aligned_cols=211  Identities=26%  Similarity=0.391  Sum_probs=169.6

Q ss_pred             CCcEEEEEeccchHHHHHHHHHHHHHhhcCCCcccc------cCCceeeeeecccCCCCHHHHHHHhC-CCCCHHHHHHH
Q 042809            5 TGALFVVKSAESEAGVQALRNEAEIRQSLNSPNIGR------NGEKTVNIFMEYMAGGSLLDVAEKFG-GTLDAGVIRLY   77 (241)
Q Consensus         5 ~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~------~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~   77 (241)
                      +|..||||+++++...+.+.+|++++++++||||++      ...+.+|+||||+++|+|.+++...+ ..+++..+..+
T Consensus        29 ~~~~vAvK~i~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i  108 (262)
T d1byga_          29 RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF  108 (262)
T ss_dssp             TTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHH
T ss_pred             CCeEEEEEEECcHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHH
Confidence            578899999998877888999999999999999998      34566899999999999999997642 34777777777


Q ss_pred             HHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccccCCCc
Q 042809           78 TKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRNEGLDF  151 (241)
Q Consensus        78 ~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~  151 (241)
                      +.|+      ||+++++||||+|+||+++.++.+|++|||++......         .....++..|+|||.+.+..++.
T Consensus       109 ~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~---------~~~~~~~~~y~aPE~l~~~~~t~  179 (262)
T d1byga_         109 SLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST---------QDTGKLPVKWTAPEALREKKFST  179 (262)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC---------------------CCTTTSCHHHHHHCCCCH
T ss_pred             HHHHHhhccccccCceeccccchHhheecCCCCEeecccccceecCCC---------CccccccccCCChHHHhCCCCCh
Confidence            6654      79999999999999999999999999999999754331         12234788999999999999999


Q ss_pred             hhhHHHHHHHHHHHHh-CCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhcC
Q 042809          152 ATDIWSLGCMVIEMAT-GRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLNH  227 (241)
Q Consensus       152 ~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~  227 (241)
                      ++||||||+++|||+| |..||...........   ...+..+..+...++.+.+|+++||..||.+|||+.+++++
T Consensus       180 ~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~---i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~~  253 (262)
T d1byga_         180 KSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPR---VEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQ  253 (262)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHH---HTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHH---HHcCCCCCCCccCCHHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence            9999999999999998 7888877654443332   33456677788889999999999999999999999999874


No 44 
>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.9e-46  Score=295.56  Aligned_cols=229  Identities=25%  Similarity=0.338  Sum_probs=173.5

Q ss_pred             CCCCCcEEEEEeccc---hHHHHHHHHHHHHHhhcCCCcccc-----c-----CCceeeeeecccCCCCHHHHHHHhCCC
Q 042809            2 NKGTGALFVVKSAES---EAGVQALRNEAEIRQSLNSPNIGR-----N-----GEKTVNIFMEYMAGGSLLDVAEKFGGT   68 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~---~~~~~~~~~e~~~l~~l~h~~i~~-----~-----~~~~~~lv~e~~~~~~L~~~l~~~~~~   68 (241)
                      |+.+|+.||||++..   +...+.+.+|+.+|++++||||++     .     .....+++ +|+.+|+|.+++..  ..
T Consensus        29 ~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~l~-~~~~~g~L~~~l~~--~~  105 (345)
T d1pmea_          29 DNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLV-THLMGADLYKLLKT--QH  105 (345)
T ss_dssp             ETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEE-EECCCEEHHHHHHH--CC
T ss_pred             ECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEEEE-EeecCCchhhhhhc--CC
Confidence            678999999999863   344567899999999999999987     1     12234554 56668999999986  46


Q ss_pred             CCHHHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcc
Q 042809           69 LDAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPE  142 (241)
Q Consensus        69 ~~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE  142 (241)
                      +++..++.++.|+      ||++|++||||||+||+++.++.+||+|||++..........   .......|++.|+|||
T Consensus       106 l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~---~~~~~~~gt~~y~aPE  182 (345)
T d1pmea_         106 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHT---GFLTEYVATRWYRAPE  182 (345)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBC---CTTCCCCSCGGGCCGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCceeeccCCCccc---eeeccccccceechHH
Confidence            8888888887766      799999999999999999999999999999997654422211   1223456899999999


Q ss_pred             ccc-ccCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcC--------------------C--CCC-----
Q 042809          143 VLR-NEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSN--------------------E--KPH-----  194 (241)
Q Consensus       143 ~~~-~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~--------------------~--~~~-----  194 (241)
                      .+. +..++.++||||+|+++|+|++|+.||.+................                    .  ...     
T Consensus       183 ~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (345)
T d1pmea_         183 IMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNR  262 (345)
T ss_dssp             GTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHH
T ss_pred             HhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHHH
Confidence            985 456788999999999999999999999765432222211111000                    0  000     


Q ss_pred             CChhhHHHHHHHHHHhhccCCCCCCChHHHhcCCCCCCCCcc
Q 042809          195 FPTQFFKKVLDFLAKCLERKPEKRWSAEELLNHTFISGNAKK  236 (241)
Q Consensus       195 ~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~p~~~~~~~~  236 (241)
                      .....+.++.+|+.+||..||.+|||++++++||||+.....
T Consensus       263 ~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~hpf~~~~~~~  304 (345)
T d1pmea_         263 LFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDP  304 (345)
T ss_dssp             HCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTTCCG
T ss_pred             hCCCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccCCCC
Confidence            112345689999999999999999999999999999865543


No 45 
>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.4e-46  Score=291.14  Aligned_cols=219  Identities=20%  Similarity=0.283  Sum_probs=166.9

Q ss_pred             CCCCcEEEEEeccc---hHHHHHHHHHHHHHhhcC-CCcccc------cCCceeeeeecccCCCCHHHHHHHhC------
Q 042809            3 KGTGALFVVKSAES---EAGVQALRNEAEIRQSLN-SPNIGR------NGEKTVNIFMEYMAGGSLLDVAEKFG------   66 (241)
Q Consensus         3 ~~~~~~vaiK~~~~---~~~~~~~~~e~~~l~~l~-h~~i~~------~~~~~~~lv~e~~~~~~L~~~l~~~~------   66 (241)
                      ..+++.||||.+..   ....+.+.+|...+.++. |+||+.      ..+..+++|||||++|+|.+++....      
T Consensus        40 ~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~  119 (299)
T d1ywna1          40 TATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPY  119 (299)
T ss_dssp             SSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-
T ss_pred             ccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCeEEEEEEecCCCcHHHHHHhcccccccc
Confidence            45678999999863   334566788888888775 888877      45667999999999999999997642      


Q ss_pred             ---------CCCCHHHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCcccccccc
Q 042809           67 ---------GTLDAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQS  131 (241)
Q Consensus        67 ---------~~~~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~  131 (241)
                               ..+++..+..++.|+      ||++|++||||||+||+++.++.+||+|||++........    ......
T Consensus       120 ~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~----~~~~~~  195 (299)
T d1ywna1         120 KVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD----YVRKGD  195 (299)
T ss_dssp             ----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECC------CCSCTT----SCCTTS
T ss_pred             ccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCccceeECCCCcEEEccCcchhhcccccc----ccccCc
Confidence                     347777777777655      7999999999999999999999999999999975433211    112234


Q ss_pred             ccCcccccCcccccccCCCchhhHHHHHHHHHHHHhC-CCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHh
Q 042809          132 IGGTQLWMAPEVLRNEGLDFATDIWSLGCMVIEMATG-RPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKC  210 (241)
Q Consensus       132 ~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  210 (241)
                      ..||+.|+|||.+.+..++.++|||||||++|||++| ..||.+.....  ........+..+..+...++++.+++.+|
T Consensus       196 ~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~li~~c  273 (299)
T d1ywna1         196 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE--EFCRRLKEGTRMRAPDYTTPEMYQTMLDC  273 (299)
T ss_dssp             CCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSH--HHHHHHHHTCCCCCCTTCCHHHHHHHHHH
T ss_pred             eeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHH--HHHHHHhcCCCCCCCccCCHHHHHHHHHH
Confidence            5689999999999999999999999999999999986 56776543322  22222233455667778889999999999


Q ss_pred             hccCCCCCCChHHHhcC
Q 042809          211 LERKPEKRWSAEELLNH  227 (241)
Q Consensus       211 l~~~p~~Rps~~~~l~~  227 (241)
                      |+.+|.+|||++++++|
T Consensus       274 l~~dP~~Rpt~~eil~~  290 (299)
T d1ywna1         274 WHGEPSQRPTFSELVEH  290 (299)
T ss_dssp             TCSSGGGSCCHHHHHHH
T ss_pred             cCCChhHCcCHHHHHHH
Confidence            99999999999999986


No 46 
>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.2e-46  Score=287.03  Aligned_cols=217  Identities=25%  Similarity=0.372  Sum_probs=173.0

Q ss_pred             CCcEEEEEeccc-----hHHHHHHHHHHHHHhhcCCCcccc----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHHHH
Q 042809            5 TGALFVVKSAES-----EAGVQALRNEAEIRQSLNSPNIGR----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGVIR   75 (241)
Q Consensus         5 ~~~~vaiK~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~   75 (241)
                      .+..||||++..     +...+.+.+|+.++++++||||++    ..+...++||||+++|+|.+++......++...+.
T Consensus        35 ~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~  114 (273)
T d1u46a_          35 KTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLS  114 (273)
T ss_dssp             CEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHHHHHHHGGGSCHHHHH
T ss_pred             cEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeecchheeeeeecCcchhhhhhcccCCCCHHHHH
Confidence            445789998763     344578999999999999999998    33467899999999999999988877789998888


Q ss_pred             HHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccccCC
Q 042809           76 LYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRNEGL  149 (241)
Q Consensus        76 ~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~  149 (241)
                      .++.|+      ||++|++||||||+||+++.++.+||+|||++.........   ........++..|+|||.+.+..+
T Consensus       115 ~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~---~~~~~~~~~~~~~~aPE~~~~~~~  191 (273)
T d1u46a_         115 RYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH---YVMQEHRKVPFAWCAPESLKTRTF  191 (273)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCE---EEC-----CCGGGCCHHHHHHCEE
T ss_pred             HHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhhhhcccCCCc---ceecCccccCcccCCHHHHhCCCC
Confidence            887764      89999999999999999999999999999999865432111   112233457889999999999999


Q ss_pred             CchhhHHHHHHHHHHHHh-CCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhc
Q 042809          150 DFATDIWSLGCMVIEMAT-GRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLN  226 (241)
Q Consensus       150 ~~~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~  226 (241)
                      +.++||||||+++|||+| |..||.+.......  .........++.+..++..+.+|+++||+.+|++|||++++++
T Consensus       192 ~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~--~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~  267 (273)
T d1u46a_         192 SHASDTWMFGVTLWEMFTYGQEPWIGLNGSQIL--HKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRD  267 (273)
T ss_dssp             EHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHH--HHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHH--HHHHhCCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            999999999999999998 89999775443332  2223344555667788899999999999999999999999864


No 47 
>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00  E-value=4.4e-46  Score=288.27  Aligned_cols=217  Identities=19%  Similarity=0.280  Sum_probs=175.2

Q ss_pred             CCCCcEEEEEeccc---hHHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCC-------
Q 042809            3 KGTGALFVVKSAES---EAGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGG-------   67 (241)
Q Consensus         3 ~~~~~~vaiK~~~~---~~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~-------   67 (241)
                      ..+++.||||++..   ....+.+.+|+.++++++||||++     ......++||||+++|+|.+++.....       
T Consensus        40 ~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~  119 (301)
T d1lufa_          40 YEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLS  119 (301)
T ss_dssp             TSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC-------
T ss_pred             CCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeeccCCceEEEEEecCCCcHHHHHHhcCcccccccc
Confidence            46778999999863   344677999999999999999998     677889999999999999999976321       


Q ss_pred             ----------------CCCHHHHHHHHHH------HhhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCcc
Q 042809           68 ----------------TLDAGVIRLYTKE------ILHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNL  125 (241)
Q Consensus        68 ----------------~~~~~~~~~~~~~------~Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  125 (241)
                                      .++...+..++.|      +||+++++||||||+||+++.++.+||+|||++........    
T Consensus       120 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~----  195 (301)
T d1lufa_         120 HSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADY----  195 (301)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGC----
T ss_pred             ccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEEcccceEECCCCcEEEccchhheeccCCcc----
Confidence                            3666667766665      48999999999999999999999999999999976543211    


Q ss_pred             ccccccccCcccccCcccccccCCCchhhHHHHHHHHHHHHhCC-CCCccchhchHHHHHHHHhcCCCCCCChhhHHHHH
Q 042809          126 KQSWQSIGGTQLWMAPEVLRNEGLDFATDIWSLGCMVIEMATGR-PPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVL  204 (241)
Q Consensus       126 ~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (241)
                      ........+++.|+|||.+.+..++.++||||||+++|||++|. .||.+......   ......+..+..+..+++++.
T Consensus       196 ~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e~---~~~v~~~~~~~~p~~~~~~~~  272 (301)
T d1lufa_         196 YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEV---IYYVRDGNILACPENCPLELY  272 (301)
T ss_dssp             BC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHH---HHHHHTTCCCCCCTTCCHHHH
T ss_pred             ccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCCHHHH---HHHHHcCCCCCCCccchHHHH
Confidence            11223456789999999999999999999999999999999975 67776544333   233334556667788899999


Q ss_pred             HHHHHhhccCCCCCCChHHHhc
Q 042809          205 DFLAKCLERKPEKRWSAEELLN  226 (241)
Q Consensus       205 ~li~~~l~~~p~~Rps~~~~l~  226 (241)
                      +|+.+||+.+|++|||+.++++
T Consensus       273 ~li~~cl~~~P~~RPt~~ev~~  294 (301)
T d1lufa_         273 NLMRLCWSKLPADRPSFCSIHR  294 (301)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHcCCChhHCcCHHHHHH
Confidence            9999999999999999999965


No 48 
>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.5e-46  Score=292.73  Aligned_cols=213  Identities=23%  Similarity=0.340  Sum_probs=173.8

Q ss_pred             EEEEEeccc---hHHHHHHHHHHHHHhhcCCCcccc----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHHHHHHHHH
Q 042809            8 LFVVKSAES---EAGVQALRNEAEIRQSLNSPNIGR----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGVIRLYTKE   80 (241)
Q Consensus         8 ~vaiK~~~~---~~~~~~~~~e~~~l~~l~h~~i~~----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~   80 (241)
                      .||+|.+..   ....+.+.+|++++++++||||++    ..++..++++||+.+++|.+++......+++..+..++.|
T Consensus        40 ~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~q  119 (317)
T d1xkka_          40 PVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQ  119 (317)
T ss_dssp             EEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred             EEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeeEEEEeccCCcccccccccccCCCHHHHHHHHHH
Confidence            688888753   334678999999999999999999    3345678889999999999999987788998888877775


Q ss_pred             H------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccccCCCchhh
Q 042809           81 I------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRNEGLDFATD  154 (241)
Q Consensus        81 ~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~D  154 (241)
                      +      ||++|++||||||+||+++.++.+||+|||++........    ........||+.|+|||.+.+..++.++|
T Consensus       120 i~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~----~~~~~~~~gt~~y~APE~l~~~~~~~~sD  195 (317)
T d1xkka_         120 IAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK----EYHAEGGKVPIKWMALESILHRIYTHQSD  195 (317)
T ss_dssp             HHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC------------CCTTTSCHHHHHHCCCCHHHH
T ss_pred             HHHHHHHHHHcCcccCcchhhcceeCCCCCeEeeccccceecccccc----cccccccccCccccChHHHhcCCCChhhh
Confidence            5      7999999999999999999999999999999986543211    11122345799999999999999999999


Q ss_pred             HHHHHHHHHHHHh-CCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhcC
Q 042809          155 IWSLGCMVIEMAT-GRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLNH  227 (241)
Q Consensus       155 i~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~  227 (241)
                      |||||+++|||+| |..||.+...........   .+..+..|..+++.+.+|+.+||+.+|.+|||+.+++.|
T Consensus       196 vwS~Gvil~el~t~g~~p~~~~~~~~~~~~i~---~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~  266 (317)
T d1xkka_         196 VWSYGVTVWELMTFGSKPYDGIPASEISSILE---KGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE  266 (317)
T ss_dssp             HHHHHHHHHHHHTTSCCTTTTSCGGGHHHHHH---HTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             hhhHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---cCCCCCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHH
Confidence            9999999999998 899998765555443333   345566777888999999999999999999999999876


No 49 
>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.5e-46  Score=287.29  Aligned_cols=218  Identities=22%  Similarity=0.287  Sum_probs=174.6

Q ss_pred             CcEEEEEecc---chHHHHHHHHHHHHHhhcCCCcccc------cCCceeeeeecccCCCCHHHHHHHhCCCCCHHHHHH
Q 042809            6 GALFVVKSAE---SEAGVQALRNEAEIRQSLNSPNIGR------NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGVIRL   76 (241)
Q Consensus         6 ~~~vaiK~~~---~~~~~~~~~~e~~~l~~l~h~~i~~------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~   76 (241)
                      ...||||.++   +....+.+.+|++++++++||||++      ..++..++|||||++|+|.+++.......+...+..
T Consensus        55 ~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~~~g~l~~~~~~~~~~~~~~~~~~  134 (311)
T d1r0pa_          55 KIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIG  134 (311)
T ss_dssp             CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECCTTCBHHHHHHCTTCCCBHHHHHH
T ss_pred             EEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEeecCchhhhhccccccchHHHHHH
Confidence            4468999875   4455688999999999999999998      456789999999999999999998777777777776


Q ss_pred             HHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccccCCC
Q 042809           77 YTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRNEGLD  150 (241)
Q Consensus        77 ~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~  150 (241)
                      ++.|+      ||+.+++||||||+||+++.++.+||+|||++..........  ........|++.|+|||.+.+..++
T Consensus       135 i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~  212 (311)
T d1r0pa_         135 FGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDS--VHNKTGAKLPVKWMALESLQTQKFT  212 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCC--TTCTTCSSCCGGGSCHHHHHHCCCC
T ss_pred             HHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhcccccccc--ceecccccccccccChHHHhcCCCC
Confidence            66654      799999999999999999999999999999998654422111  1122234689999999999999999


Q ss_pred             chhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhcC
Q 042809          151 FATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLNH  227 (241)
Q Consensus       151 ~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~  227 (241)
                      .++||||||+++|||++|..||......  .........+..+..|...++.+.+|+.+||+.+|++|||+.|++++
T Consensus       213 ~ksDI~SfGivl~El~t~~~p~~~~~~~--~~~~~~i~~g~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~  287 (311)
T d1r0pa_         213 TKSDVWSFGVLLWELMTRGAPPYPDVNT--FDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  287 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSCC--------CHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ChhHhhhhHHHHHHHHHCCCCCCCCCCH--HHHHHHHHcCCCCCCcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence            9999999999999999977777543221  12222333445666777788999999999999999999999999988


No 50 
>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}
Probab=100.00  E-value=1.8e-46  Score=294.10  Aligned_cols=222  Identities=26%  Similarity=0.370  Sum_probs=172.4

Q ss_pred             CCCCCcEEEEEeccchHHHHHHHHHHHHHhhcC-CCcccc-------cCCceeeeeecccCCCCHHHHHHHhCCCCCHHH
Q 042809            2 NKGTGALFVVKSAESEAGVQALRNEAEIRQSLN-SPNIGR-------NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGV   73 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~-h~~i~~-------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~   73 (241)
                      |+.+|+.||||++.... .+.+.+|+.+|+.+. ||||++       .....+++|||||.+++|..+.    ..+++..
T Consensus        56 ~~~~~~~vAiK~i~~~~-~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~----~~l~e~~  130 (328)
T d3bqca1          56 NITNNEKVVVKILKPVK-KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLY----QTLTDYD  130 (328)
T ss_dssp             ETTTTEEEEEEEECSSC-HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEECCCSCBGGGTT----TSCCHHH
T ss_pred             ECCCCCEEEEEEECHHH-HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEeecCCCcHHHHh----cCCCHHH
Confidence            67899999999987543 567899999999996 999988       3456799999999999997663    3588888


Q ss_pred             HHHHHHHH------hhcCCccccCCCCCcEEeecCC-CeeecCCCcchhhcccccCCccccccccccCcccccCcccccc
Q 042809           74 IRLYTKEI------LHGNGILHCDLKCNNVLLGSHG-DVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRN  146 (241)
Q Consensus        74 ~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~-~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~  146 (241)
                      ++.++.|+      ||++|++||||||+||+++.++ .++|+|||++......       .......+|+.|+|||.+.+
T Consensus       131 i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~-------~~~~~~~~t~~y~aPE~~~~  203 (328)
T d3bqca1         131 IRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG-------QEYNVRVASRYFKGPELLVD  203 (328)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTT-------CCCCSCCSCGGGCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccceeccCC-------CcccccccCccccCcccccC
Confidence            88887766      7999999999999999998765 5899999999765431       12234568999999999876


Q ss_pred             cC-CCchhhHHHHHHHHHHHHhCCCCCccchhchHH--HHHHHH----------h--cC--------------------C
Q 042809          147 EG-LDFATDIWSLGCMVIEMATGRPPWGDKISNAAA--TLLKIA----------C--SN--------------------E  191 (241)
Q Consensus       147 ~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~--~~~~~~----------~--~~--------------------~  191 (241)
                      .. ++.++||||+|+++|++++|..||.........  .+....          .  ..                    .
T Consensus       204 ~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (328)
T d3bqca1         204 YQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFV  283 (328)
T ss_dssp             CCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCGGGGC
T ss_pred             CCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhcccccccchhhcc
Confidence            54 789999999999999999999999654322111  110000          0  00                    0


Q ss_pred             CCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhcCCCCCCCCc
Q 042809          192 KPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLNHTFISGNAK  235 (241)
Q Consensus       192 ~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~p~~~~~~~  235 (241)
                      .......+++++.+||++||..||.+|||++|+|+||||+...+
T Consensus       284 ~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~Hp~F~~v~~  327 (328)
T d3bqca1         284 HSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVK  327 (328)
T ss_dssp             CTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTSCC
T ss_pred             cccccccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCCCC
Confidence            00112345678999999999999999999999999999987544


No 51 
>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.9e-46  Score=296.14  Aligned_cols=224  Identities=23%  Similarity=0.339  Sum_probs=169.2

Q ss_pred             CCCCCcEEEEEeccchHHHHHHHHHHHHHhhcCCCcccc-----------cCCceeeeeecccCCCCHHHHHH--HhCCC
Q 042809            2 NKGTGALFVVKSAESEAGVQALRNEAEIRQSLNSPNIGR-----------NGEKTVNIFMEYMAGGSLLDVAE--KFGGT   68 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~-----------~~~~~~~lv~e~~~~~~L~~~l~--~~~~~   68 (241)
                      |+.+|+.||||++..+.  ..+.+|+.+|++++||||++           .+..++|+|||||+++.+..+..  .....
T Consensus        41 ~~~~~~~vAiK~i~~~~--~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~~~~~~~~l~~~~~~~~~  118 (350)
T d1q5ka_          41 LCDSGELVAIKKVLQDK--RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQT  118 (350)
T ss_dssp             ETTTCCEEEEEEEECCS--SSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEECCSEEHHHHHHHHHHTTCC
T ss_pred             ECCCCCEEEEEEECccc--hHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEeccCCccHHHHHhhhhccCC
Confidence            67899999999987543  33458999999999999988           23446899999997654333322  23567


Q ss_pred             CCHHHHHHHHHHH------hhcCCccccCCCCCcEEeecCC-CeeecCCCcchhhcccccCCccccccccccCcccccCc
Q 042809           69 LDAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHG-DVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAP  141 (241)
Q Consensus        69 ~~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~-~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aP  141 (241)
                      +++..++.++.|+      ||++|++||||||+||+++.++ .+||+|||++......       .......|++.|+||
T Consensus       119 l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~-------~~~~~~~gt~~y~aP  191 (350)
T d1q5ka_         119 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG-------EPNVSYICSRYYRAP  191 (350)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTT-------SCCCSCCSCTTSCCH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccchhhccCC-------cccccccccccccCh
Confidence            8888888777765      7999999999999999999875 7999999998755331       112335689999999


Q ss_pred             ccccc-cCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcC----------------CCC---------CC
Q 042809          142 EVLRN-EGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSN----------------EKP---------HF  195 (241)
Q Consensus       142 E~~~~-~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~----------------~~~---------~~  195 (241)
                      |.+.+ ..++.++||||+||++|+|++|..||..................                ..+         ..
T Consensus       192 E~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (350)
T d1q5ka_         192 ELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVF  271 (350)
T ss_dssp             HHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTS
T ss_pred             HHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhc
Confidence            98865 56899999999999999999999999765433322211111000                000         11


Q ss_pred             ChhhHHHHHHHHHHhhccCCCCCCChHHHhcCCCCCCCC
Q 042809          196 PTQFFKKVLDFLAKCLERKPEKRWSAEELLNHTFISGNA  234 (241)
Q Consensus       196 ~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~p~~~~~~  234 (241)
                      ....++++.+|+.+||..||.+|||++|+++||||+.-.
T Consensus       272 ~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~  310 (350)
T d1q5ka_         272 RPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELR  310 (350)
T ss_dssp             CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGG
T ss_pred             ccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhcccc
Confidence            234677899999999999999999999999999997643


No 52 
>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=6.5e-46  Score=293.58  Aligned_cols=220  Identities=24%  Similarity=0.303  Sum_probs=166.0

Q ss_pred             CCCCCcEEEEEeccc----hHHHHHHHHHHHHHhhcCCCcccc-----------cCCceeeeeecccCCCCHHHHHHHhC
Q 042809            2 NKGTGALFVVKSAES----EAGVQALRNEAEIRQSLNSPNIGR-----------NGEKTVNIFMEYMAGGSLLDVAEKFG   66 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~----~~~~~~~~~e~~~l~~l~h~~i~~-----------~~~~~~~lv~e~~~~~~L~~~l~~~~   66 (241)
                      |+.||+.||||++..    ......+.+|+.++++++||||++           ....++|+|||||.+ ++.+.+.   
T Consensus        38 d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~~~iv~Ey~~~-~l~~~~~---  113 (355)
T d2b1pa1          38 DAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDA-NLCQVIQ---  113 (355)
T ss_dssp             ETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSE-EHHHHHT---
T ss_pred             ECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCceeEEEEeccch-HHHHhhh---
Confidence            678999999999863    344567899999999999999988           245789999999975 4544443   


Q ss_pred             CCCCHHHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccC
Q 042809           67 GTLDAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMA  140 (241)
Q Consensus        67 ~~~~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  140 (241)
                      ..+++..++.++.|+      ||++|++||||||+||+++.++.++++|||++......       .......+|+.|+|
T Consensus       114 ~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~-------~~~~~~~~t~~y~a  186 (355)
T d2b1pa1         114 MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS-------FMMTPYVVTRYYRA  186 (355)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC----------------------CCTTCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechhhhhccccc-------cccccccccccccC
Confidence            457888888888766      79999999999999999999999999999998765441       22234568999999


Q ss_pred             cccccccCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcC-------------------CCC--------
Q 042809          141 PEVLRNEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSN-------------------EKP--------  193 (241)
Q Consensus       141 PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~-------------------~~~--------  193 (241)
                      ||.+.+..+++++||||+||++|+|++|+.||.+................                   ...        
T Consensus       187 PE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (355)
T d2b1pa1         187 PEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPK  266 (355)
T ss_dssp             HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHH
T ss_pred             hhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCcccccccccc
Confidence            99999999999999999999999999999999765433222221111100                   000        


Q ss_pred             -----------CCChhhHHHHHHHHHHhhccCCCCCCChHHHhcCCCCCC
Q 042809          194 -----------HFPTQFFKKVLDFLAKCLERKPEKRWSAEELLNHTFISG  232 (241)
Q Consensus       194 -----------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~p~~~~  232 (241)
                                 ......++++.+|+++||..||.+|||++|+|+||||+.
T Consensus       267 ~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~Hpw~~~  316 (355)
T d2b1pa1         267 LFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV  316 (355)
T ss_dssp             HSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGG
T ss_pred             ccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcCcccCC
Confidence                       001234678999999999999999999999999999976


No 53 
>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.2e-45  Score=283.74  Aligned_cols=224  Identities=23%  Similarity=0.338  Sum_probs=175.5

Q ss_pred             CCCCCcEEEEEeccc----hHHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCHH
Q 042809            2 NKGTGALFVVKSAES----EAGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAG   72 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~----~~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~   72 (241)
                      |+.+|+.||||+++.    +.....+.+|+.+++.++||||++     ......++|++++.+++|..++.. ...++..
T Consensus        23 ~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~~~~~~~l~~~~~~-~~~~~~~  101 (292)
T d1unla_          23 NRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSC-NGDLDPE  101 (292)
T ss_dssp             ETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSEEHHHHHHHT-TTCCCHH
T ss_pred             ECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEeeecccccccccccc-ccccchh
Confidence            678999999999752    345678999999999999999998     788899999999998888887765 5677888


Q ss_pred             HHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCcccccc
Q 042809           73 VIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAPEVLRN  146 (241)
Q Consensus        73 ~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~  146 (241)
                      .++.++.|+      ||++|++||||||+||+++.++.+||+|||.+........      ......+++.|.|||.+.+
T Consensus       102 ~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~------~~~~~~~~~~~~~pe~~~~  175 (292)
T d1unla_         102 IVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVR------CYSAEVVTLWYRPPDVLFG  175 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCS------CCCSCCSCGGGCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhcccCCCc------cceeeccccchhhhhHhcc
Confidence            877777655      7999999999999999999999999999999976543211      1123346788999999876


Q ss_pred             cC-CCchhhHHHHHHHHHHHHhCCCCCccchh-chHHHHHHHHhcC-------------------------CCCCCChhh
Q 042809          147 EG-LDFATDIWSLGCMVIEMATGRPPWGDKIS-NAAATLLKIACSN-------------------------EKPHFPTQF  199 (241)
Q Consensus       147 ~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~-~~~~~~~~~~~~~-------------------------~~~~~~~~~  199 (241)
                      .. ++.++||||+||++|+|++|..||..... .............                         .........
T Consensus       176 ~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (292)
T d1unla_         176 AKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKL  255 (292)
T ss_dssp             CSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTC
T ss_pred             CCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccccC
Confidence            55 68999999999999999999998744322 2222221111111                         111123445


Q ss_pred             HHHHHHHHHHhhccCCCCCCChHHHhcCCCCCC
Q 042809          200 FKKVLDFLAKCLERKPEKRWSAEELLNHTFISG  232 (241)
Q Consensus       200 ~~~~~~li~~~l~~~p~~Rps~~~~l~~p~~~~  232 (241)
                      ++.+.+|+++||+.||++|||++|+++||||++
T Consensus       256 s~~~~dll~~mL~~dP~~R~sa~e~L~Hp~f~~  288 (292)
T d1unla_         256 NATGRDLLQNLLKCNPVQRISAEEALQHPYFSD  288 (292)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGSS
T ss_pred             CHHHHHHHHHHccCChhHCcCHHHHhcChhhcC
Confidence            678999999999999999999999999999975


No 54 
>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.8e-45  Score=282.66  Aligned_cols=216  Identities=21%  Similarity=0.345  Sum_probs=179.1

Q ss_pred             CCCcEEEEEeccc---hHHHHHHHHHHHHHhhc-CCCcccc-----cCCceeeeeecccCCCCHHHHHHHhC--------
Q 042809            4 GTGALFVVKSAES---EAGVQALRNEAEIRQSL-NSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFG--------   66 (241)
Q Consensus         4 ~~~~~vaiK~~~~---~~~~~~~~~e~~~l~~l-~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~--------   66 (241)
                      .++..||||++..   +.....+.+|...+.++ +||||++     ..++.+++||||+++|+|.+++....        
T Consensus        43 ~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~  122 (299)
T d1fgka_          43 NRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSY  122 (299)
T ss_dssp             CCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHTTSCC------
T ss_pred             cCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCCeEEEEEEccCCCcHHHHHHhhcCCcccccc
Confidence            3456899999863   34567789999999888 7999998     66788999999999999999998643        


Q ss_pred             -------CCCCHHHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCcccccccccc
Q 042809           67 -------GTLDAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIG  133 (241)
Q Consensus        67 -------~~~~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~  133 (241)
                             ..+++..+..++.|+      ||+++++||||||+||+++.++.+||+|||.+.........    .......
T Consensus       123 ~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~----~~~~~~~  198 (299)
T d1fgka_         123 NPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYY----KKTTNGR  198 (299)
T ss_dssp             ------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTT----CCCTTSC
T ss_pred             ccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeecccceeecCCCCeEeccchhhccccccccc----cccccCC
Confidence                   347888888887764      89999999999999999999999999999999866542221    2233456


Q ss_pred             CcccccCcccccccCCCchhhHHHHHHHHHHHHh-CCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhc
Q 042809          134 GTQLWMAPEVLRNEGLDFATDIWSLGCMVIEMAT-GRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLE  212 (241)
Q Consensus       134 ~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  212 (241)
                      +++.|+|||.+.+..++.++||||||+++|+|++ |..||.+......   ......+..+..+..+++.+.+||.+||+
T Consensus       199 ~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~~---~~~i~~~~~~~~p~~~~~~l~~li~~cl~  275 (299)
T d1fgka_         199 LPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEEL---FKLLKEGHRMDKPSNCTNELYMMMRDCWH  275 (299)
T ss_dssp             CGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHH---HHHHHTTCCCCCCSSCCHHHHHHHHHHTC
T ss_pred             CChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHHH---HHHHHcCCCCCCCccchHHHHHHHHHHcc
Confidence            8899999999999999999999999999999998 7899976554433   33333456677788889999999999999


Q ss_pred             cCCCCCCChHHHhc
Q 042809          213 RKPEKRWSAEELLN  226 (241)
Q Consensus       213 ~~p~~Rps~~~~l~  226 (241)
                      .+|.+|||+.++++
T Consensus       276 ~dP~~Rps~~eil~  289 (299)
T d1fgka_         276 AVPSQRPTFKQLVE  289 (299)
T ss_dssp             SSGGGSCCHHHHHH
T ss_pred             CCHhHCcCHHHHHH
Confidence            99999999999986


No 55 
>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.4e-46  Score=292.65  Aligned_cols=223  Identities=22%  Similarity=0.324  Sum_probs=171.7

Q ss_pred             CCCCCcEEEEEeccc----hHHHHHHHHHHHHHhhcCCCcccc----------cCCceeeeeecccCCCCHHHHHHHhCC
Q 042809            2 NKGTGALFVVKSAES----EAGVQALRNEAEIRQSLNSPNIGR----------NGEKTVNIFMEYMAGGSLLDVAEKFGG   67 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~----~~~~~~~~~e~~~l~~l~h~~i~~----------~~~~~~~lv~e~~~~~~L~~~l~~~~~   67 (241)
                      |+.+|+.||||++..    ....+.+.+|+.++++++||||++          ..+...+++++|+.+|+|.+++..  .
T Consensus        39 ~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~~~~~--~  116 (348)
T d2gfsa1          39 DTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKC--Q  116 (348)
T ss_dssp             ETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHTT--C
T ss_pred             ECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCceEEEEEeecCCchhhhccc--c
Confidence            678999999999863    344567899999999999999987          123445666778889999999964  5


Q ss_pred             CCCHHHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccCc
Q 042809           68 TLDAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMAP  141 (241)
Q Consensus        68 ~~~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~aP  141 (241)
                      ++++..++.++.|+      ||++|++||||||+||+++.+|.+|++|||.+.....         ......|++.|+||
T Consensus       117 ~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~---------~~~~~~g~~~y~ap  187 (348)
T d2gfsa1         117 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDD---------EMTGYVATRWYRAP  187 (348)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC----CCTG---------GGSSSCHHHHTSCH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccchhcccCc---------ccccccccccccCc
Confidence            78999988888766      7999999999999999999999999999999875433         12345588999999


Q ss_pred             ccccccC-CCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHHHHHhcCC----------------------CCCC---
Q 042809          142 EVLRNEG-LDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLLKIACSNE----------------------KPHF---  195 (241)
Q Consensus       142 E~~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~----------------------~~~~---  195 (241)
                      |.+.+.. ++.++||||+|+++|+|++|+.||.+.................                      .+..   
T Consensus       188 E~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (348)
T d2gfsa1         188 EIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFA  267 (348)
T ss_dssp             HHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHH
T ss_pred             hhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchh
Confidence            9877654 5889999999999999999999997654433333222221110                      0000   


Q ss_pred             --ChhhHHHHHHHHHHhhccCCCCCCChHHHhcCCCCCCCCc
Q 042809          196 --PTQFFKKVLDFLAKCLERKPEKRWSAEELLNHTFISGNAK  235 (241)
Q Consensus       196 --~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~p~~~~~~~  235 (241)
                        ....++++.+||++||..||.+|||++|+++||||+....
T Consensus       268 ~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~Hp~f~~~~~  309 (348)
T d2gfsa1         268 NVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHD  309 (348)
T ss_dssp             HHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCC
T ss_pred             hhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhcCHhhCCCCC
Confidence              1235678999999999999999999999999999986543


No 56 
>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8e-45  Score=281.80  Aligned_cols=222  Identities=19%  Similarity=0.281  Sum_probs=177.5

Q ss_pred             CCCcEEEEEeccc---hHHHHHHHHHHHHHhhcCCCcccc-----cCCceeeeeecccCCCCHHHHHHHhC---------
Q 042809            4 GTGALFVVKSAES---EAGVQALRNEAEIRQSLNSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFG---------   66 (241)
Q Consensus         4 ~~~~~vaiK~~~~---~~~~~~~~~e~~~l~~l~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~---------   66 (241)
                      .++..||||+++.   ......+.+|+.++++++||||++     ..+...++||||+++|+|.+++....         
T Consensus        48 ~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~  127 (308)
T d1p4oa_          48 EPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVL  127 (308)
T ss_dssp             EEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTC
T ss_pred             CCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCceeEEEeecCCCCHHHHHHhccccccccccc
Confidence            3467899999873   344556899999999999999998     66778999999999999999987532         


Q ss_pred             CCCCHHHHHHHHHH------HhhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCcccccC
Q 042809           67 GTLDAGVIRLYTKE------ILHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWMA  140 (241)
Q Consensus        67 ~~~~~~~~~~~~~~------~Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  140 (241)
                      ..++...+..++.+      +||+++++||||||+||+++.++++||+|||++........    ........+++.|+|
T Consensus       128 ~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~----~~~~~~~~~t~~y~a  203 (308)
T d1p4oa_         128 APPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDY----YRKGGKGLLPVRWMS  203 (308)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGC----EEGGGSSEECGGGCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCceEEEeecccceeccCCcc----eeeccceecccccCC
Confidence            23566666666554      48999999999999999999999999999999976544221    111223457899999


Q ss_pred             cccccccCCCchhhHHHHHHHHHHHHhC-CCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCC
Q 042809          141 PEVLRNEGLDFATDIWSLGCMVIEMATG-RPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRW  219 (241)
Q Consensus       141 PE~~~~~~~~~~~Di~slG~~l~~l~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  219 (241)
                      ||.+.+..++.++||||||+++|||+|| ..||.+.......   .....+..+..+..+++.+.+++.+||+.+|.+||
T Consensus       204 Pe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~~---~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RP  280 (308)
T d1p4oa_         204 PESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVL---RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRP  280 (308)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHH---HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             HHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHHHH---HHHHhCCCCCCcccchHHHHHHHHHHcCCChhHCc
Confidence            9999999999999999999999999997 5778665443332   33334555667778889999999999999999999


Q ss_pred             ChHHHhc------CCCCCC
Q 042809          220 SAEELLN------HTFISG  232 (241)
Q Consensus       220 s~~~~l~------~p~~~~  232 (241)
                      |++++++      +|+|+.
T Consensus       281 s~~~il~~L~~~~~~~~~~  299 (308)
T d1p4oa_         281 SFLEIISSIKEEMEPGFRE  299 (308)
T ss_dssp             CHHHHHHHHGGGSCTTHHH
T ss_pred             CHHHHHHHHHHhcCCCCcC
Confidence            9999997      677754


No 57 
>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.8e-45  Score=284.63  Aligned_cols=215  Identities=24%  Similarity=0.336  Sum_probs=171.3

Q ss_pred             CCCCc--EEEEEecc---chHHHHHHHHHHHHHhhc-CCCcccc-----cCCceeeeeecccCCCCHHHHHHHh------
Q 042809            3 KGTGA--LFVVKSAE---SEAGVQALRNEAEIRQSL-NSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKF------   65 (241)
Q Consensus         3 ~~~~~--~vaiK~~~---~~~~~~~~~~e~~~l~~l-~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~------   65 (241)
                      +.+|.  .||||.+.   .....+.+.+|+++|.++ +||||++     ...+.+++||||+++|+|.+++...      
T Consensus        32 ~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~  111 (309)
T d1fvra_          32 KKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETD  111 (309)
T ss_dssp             EETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHC
T ss_pred             CCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEEEEecCCCcHHHHHhhccccccc
Confidence            34554  46778765   233456799999999999 6999999     5678899999999999999999753      


Q ss_pred             ---------CCCCCHHHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccc
Q 042809           66 ---------GGTLDAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQ  130 (241)
Q Consensus        66 ---------~~~~~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  130 (241)
                               ...+++.....++.|+      ||+++++||||||+||+++.++.+||+|||++.......       ...
T Consensus       112 ~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~~-------~~~  184 (309)
T d1fvra_         112 PAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYV-------KKT  184 (309)
T ss_dssp             HHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEESSCEEC-------CC-
T ss_pred             hhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEEcCCCceEEccccccccccccc-------ccc
Confidence                     3568888887777765      799999999999999999999999999999997544321       112


Q ss_pred             cccCcccccCcccccccCCCchhhHHHHHHHHHHHHhCC-CCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHHH
Q 042809          131 SIGGTQLWMAPEVLRNEGLDFATDIWSLGCMVIEMATGR-PPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLAK  209 (241)
Q Consensus       131 ~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  209 (241)
                      ...||..|+|||.+.+..++.++||||||+++|+|++|. +||.+...   .........+..+..+..+++++.+||.+
T Consensus       185 ~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~li~~  261 (309)
T d1fvra_         185 MGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC---AELYEKLPQGYRLEKPLNCDDEVYDLMRQ  261 (309)
T ss_dssp             ---CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCH---HHHHHHGGGTCCCCCCTTBCHHHHHHHHH
T ss_pred             ceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCH---HHHHHHHHhcCCCCCCccCCHHHHHHHHH
Confidence            345889999999999999999999999999999999965 57765433   23333444456677788899999999999


Q ss_pred             hhccCCCCCCChHHHhcC
Q 042809          210 CLERKPEKRWSAEELLNH  227 (241)
Q Consensus       210 ~l~~~p~~Rps~~~~l~~  227 (241)
                      ||+.+|++|||+++++++
T Consensus       262 cl~~dP~~RPs~~eil~~  279 (309)
T d1fvra_         262 CWREKPYERPSFAQILVS  279 (309)
T ss_dssp             HTCSSGGGSCCHHHHHHH
T ss_pred             HcCCChhHCcCHHHHHHH
Confidence            999999999999999976


No 58 
>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.1e-44  Score=279.90  Aligned_cols=219  Identities=23%  Similarity=0.312  Sum_probs=176.1

Q ss_pred             CCCCCcEEEEEeccc---hHHHHHHHHHHHHHhhc-CCCcccc-----cCCceeeeeecccCCCCHHHHHHHhC------
Q 042809            2 NKGTGALFVVKSAES---EAGVQALRNEAEIRQSL-NSPNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFG------   66 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~---~~~~~~~~~e~~~l~~l-~h~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~------   66 (241)
                      +..+++.||||.++.   ......+.+|+.+++++ +||||++     ......++|||||++|+|.+++....      
T Consensus        49 ~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~  128 (311)
T d1t46a_          49 KSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICS  128 (311)
T ss_dssp             STTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC---
T ss_pred             cCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEEEEEEEcCCCCCHHHHHHhcccccccc
Confidence            356788999999863   33456789999999999 5999998     66778999999999999999998642      


Q ss_pred             -----------CCCCHHHHHHHHHHH------hhcCCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCcccccc
Q 042809           67 -----------GTLDAGVIRLYTKEI------LHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSW  129 (241)
Q Consensus        67 -----------~~~~~~~~~~~~~~~------Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  129 (241)
                                 ..+++..+..++.|+      ||++|++||||||+||+++.++.++++|||.+........    ....
T Consensus       129 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~----~~~~  204 (311)
T d1t46a_         129 KTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSN----YVVK  204 (311)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTT----SEEC
T ss_pred             ccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeecccccccccccccCcccccccchheeccCCCc----ceEe
Confidence                       247777877777765      7999999999999999999999999999999986544221    1222


Q ss_pred             ccccCcccccCcccccccCCCchhhHHHHHHHHHHHHh-CCCCCccchhchHHHHHHHHhcCCCCCCChhhHHHHHHHHH
Q 042809          130 QSIGGTQLWMAPEVLRNEGLDFATDIWSLGCMVIEMAT-GRPPWGDKISNAAATLLKIACSNEKPHFPTQFFKKVLDFLA  208 (241)
Q Consensus       130 ~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  208 (241)
                      ....||+.|+|||.+.+..++.++||||||+++|+|+| |.+||.........  ......+..+..+...+..+.+||.
T Consensus       205 ~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~l~~Li~  282 (311)
T d1t46a_         205 GNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKF--YKMIKEGFRMLSPEHAPAEMYDIMK  282 (311)
T ss_dssp             SSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHH--HHHHHHTCCCCCCTTSCHHHHHHHH
T ss_pred             eecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHHH--HHHHhcCCCCCCcccccHHHHHHHH
Confidence            34568999999999999999999999999999999999 66666554333222  2222234555666778899999999


Q ss_pred             HhhccCCCCCCChHHHhc
Q 042809          209 KCLERKPEKRWSAEELLN  226 (241)
Q Consensus       209 ~~l~~~p~~Rps~~~~l~  226 (241)
                      +||+.+|++|||++++++
T Consensus       283 ~cl~~dP~~RPs~~~il~  300 (311)
T d1t46a_         283 TCWDADPLKRPTFKQIVQ  300 (311)
T ss_dssp             HHTCSSGGGSCCHHHHHH
T ss_pred             HHcCCChhHCcCHHHHHH
Confidence            999999999999999985


No 59 
>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00  E-value=1.9e-44  Score=279.08  Aligned_cols=232  Identities=16%  Similarity=0.207  Sum_probs=176.6

Q ss_pred             CCCCCcEEEEEeccchHHHHHHHHHHHHHhhcCCCcccc------cCCceeeeeecccCCCCHHHHHHHhCCCCCHHHHH
Q 042809            2 NKGTGALFVVKSAESEAGVQALRNEAEIRQSLNSPNIGR------NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGVIR   75 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~   75 (241)
                      |+.+|+.||||++..+...+.+.+|+++++.++|+|++.      ...+..++||||+ +++|...+......++...+.
T Consensus        28 ~~~~~~~vAvK~~~~~~~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~-~~~l~~~~~~~~~~~~~~~~~  106 (299)
T d1ckia_          28 DIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVL  106 (299)
T ss_dssp             ETTTTEEEEEEEEESCTTSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHH
T ss_pred             ECCCCCEEEEEEEchhccCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEc-CCchhhhhhhccCCCcHHHHH
Confidence            578899999999886655677899999999999887765      5667899999999 568888887777889999988


Q ss_pred             HHHHHH------hhcCCccccCCCCCcEEeec---CCCeeecCCCcchhhcccccCCc-cccccccccCcccccCccccc
Q 042809           76 LYTKEI------LHGNGILHCDLKCNNVLLGS---HGDVKLPDLGCARRVNDLKNNGN-LKQSWQSIGGTQLWMAPEVLR  145 (241)
Q Consensus        76 ~~~~~~------Lh~~~~vH~dl~p~Nil~~~---~~~~kl~dfg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~aPE~~~  145 (241)
                      .++.|+      ||++|++||||||+||+++.   +..++|+|||++........... .........||+.|+|||.+.
T Consensus       107 ~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  186 (299)
T d1ckia_         107 LLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHL  186 (299)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHh
Confidence            887765      79999999999999999854   45699999999987654322221 112334567999999999999


Q ss_pred             ccCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHH----HHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCCCh
Q 042809          146 NEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLL----KIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRWSA  221 (241)
Q Consensus       146 ~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  221 (241)
                      +..++.++|||||||++|+|++|..||............    ........+..+..+++++.+++.+||+.+|.+||++
T Consensus       187 ~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~~cl~~~p~~RP~~  266 (299)
T d1ckia_         187 GIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDY  266 (299)
T ss_dssp             TBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHSCTTCCCCH
T ss_pred             CCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhHhccCCCHHHHHHHHHHccCChhHCcCH
Confidence            999999999999999999999999999764333222111    1111111122334567889999999999999999998


Q ss_pred             H---HHhcCCCCCCCC
Q 042809          222 E---ELLNHTFISGNA  234 (241)
Q Consensus       222 ~---~~l~~p~~~~~~  234 (241)
                      +   ++++++|.+...
T Consensus       267 ~~i~~~l~~~~~~~~~  282 (299)
T d1ckia_         267 SYLRQLFRNLFHRQGF  282 (299)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            7   457777765443


No 60 
>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.2e-43  Score=269.75  Aligned_cols=220  Identities=22%  Similarity=0.251  Sum_probs=157.3

Q ss_pred             CCCcEEEEEeccchHHHH-HHHHHHHHHhhcCCCcccc---------cCCceeeeeecccCCCCHHHHHHHhCCCCCHHH
Q 042809            4 GTGALFVVKSAESEAGVQ-ALRNEAEIRQSLNSPNIGR---------NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGV   73 (241)
Q Consensus         4 ~~~~~vaiK~~~~~~~~~-~~~~e~~~l~~l~h~~i~~---------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~   73 (241)
                      .+|+.||||++..+.... ....|+..+.+++||||++         .....+|+|||||++|+|.++++.  ..+++..
T Consensus        24 ~~g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~--~~l~~~~  101 (303)
T d1vjya_          24 WRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR--YTVTVEG  101 (303)
T ss_dssp             ETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHH--CCBCHHH
T ss_pred             ECCEEEEEEEECccchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEecccCCCHHHHHhc--CCCCHHH
Confidence            368899999987654322 2334555667889999998         122478999999999999999987  3577766


Q ss_pred             HHHHHHHH------hhc--------CCccccCCCCCcEEeecCCCeeecCCCcchhhcccccCCccccccccccCccccc
Q 042809           74 IRLYTKEI------LHG--------NGILHCDLKCNNVLLGSHGDVKLPDLGCARRVNDLKNNGNLKQSWQSIGGTQLWM  139 (241)
Q Consensus        74 ~~~~~~~~------Lh~--------~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (241)
                      ...++.++      ||+        +|++||||||+||+++.++.+||+|||++........  ..........||+.|+
T Consensus       102 ~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~--~~~~~~~~~~gt~~y~  179 (303)
T d1vjya_         102 MIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATD--TIDIAPNHRVGTKRYM  179 (303)
T ss_dssp             HHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTT--EECC----CCSCGGGC
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccccCCCc--ceeccccceecccCcC
Confidence            66666544      564        6999999999999999999999999999976543211  1111223456899999


Q ss_pred             CcccccccC------CCchhhHHHHHHHHHHHHhCCCCCccchh------------chHHHHHHHH-hcCCCCCCCh---
Q 042809          140 APEVLRNEG------LDFATDIWSLGCMVIEMATGRPPWGDKIS------------NAAATLLKIA-CSNEKPHFPT---  197 (241)
Q Consensus       140 aPE~~~~~~------~~~~~Di~slG~~l~~l~~g~~p~~~~~~------------~~~~~~~~~~-~~~~~~~~~~---  197 (241)
                      |||++.+..      ++.++||||||+++|||+||..||.....            .......... .....+..+.   
T Consensus       180 aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  259 (303)
T d1vjya_         180 APEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQ  259 (303)
T ss_dssp             CHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGG
T ss_pred             ChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhccccCCCCCcccC
Confidence            999987643      56789999999999999999887643211            1111122211 2223333333   


Q ss_pred             --hhHHHHHHHHHHhhccCCCCCCChHHHhcC
Q 042809          198 --QFFKKVLDFLAKCLERKPEKRWSAEELLNH  227 (241)
Q Consensus       198 --~~~~~~~~li~~~l~~~p~~Rps~~~~l~~  227 (241)
                        ..+..+.+|+.+||+.||++|||+.+++++
T Consensus       260 ~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~  291 (303)
T d1vjya_         260 SCEALRVMAKIMRECWYANGAARLTALRIKKT  291 (303)
T ss_dssp             GCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence              234568999999999999999999999763


No 61 
>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=100.00  E-value=1.3e-42  Score=267.67  Aligned_cols=223  Identities=15%  Similarity=0.205  Sum_probs=173.4

Q ss_pred             CCCCCcEEEEEeccchHHHHHHHHHHHHHhhcCC-Ccccc-----cCCceeeeeecccCCCCHHHHHHHhCCCCCHHHHH
Q 042809            2 NKGTGALFVVKSAESEAGVQALRNEAEIRQSLNS-PNIGR-----NGEKTVNIFMEYMAGGSLLDVAEKFGGTLDAGVIR   75 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h-~~i~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~   75 (241)
                      |+.+|+.||||+.......+.+.+|++.+..+.| +|++.     ..+...++||||+ +++|.+++...+..++...+.
T Consensus        26 ~~~~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~-~~~l~~~~~~~~~~~~~~~~~  104 (293)
T d1csna_          26 NLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLCGRKFSVKTVA  104 (293)
T ss_dssp             ETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHH
T ss_pred             ECCCCCEEEEEEEccccCcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEec-CCCHHHHHHhhccchhhHHHH
Confidence            6788999999998766556678899999999985 77765     6778899999999 689999998877788888888


Q ss_pred             HHHHHH------hhcCCccccCCCCCcEEeec-----CCCeeecCCCcchhhcccccCCc-cccccccccCcccccCccc
Q 042809           76 LYTKEI------LHGNGILHCDLKCNNVLLGS-----HGDVKLPDLGCARRVNDLKNNGN-LKQSWQSIGGTQLWMAPEV  143 (241)
Q Consensus        76 ~~~~~~------Lh~~~~vH~dl~p~Nil~~~-----~~~~kl~dfg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~aPE~  143 (241)
                      .++.|+      ||++|++||||||+||+++.     ++.++|+|||++........... .........||+.|+|||.
T Consensus       105 ~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~  184 (293)
T d1csna_         105 MAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINT  184 (293)
T ss_dssp             HHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHH
Confidence            777655      79999999999999999974     56799999999987654322221 1123345679999999999


Q ss_pred             ccccCCCchhhHHHHHHHHHHHHhCCCCCccchhchHHHHH----HHHhcCCCCCCChhhHHHHHHHHHHhhccCCCCCC
Q 042809          144 LRNEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAAATLL----KIACSNEKPHFPTQFFKKVLDFLAKCLERKPEKRW  219 (241)
Q Consensus       144 ~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  219 (241)
                      +.+..++.++||||||+++|+|++|..||.+..........    ...........+..+|+++.+++..|+..+|.+||
T Consensus       185 ~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii~~~~~~~~~~rP  264 (293)
T d1csna_         185 HLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATP  264 (293)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCC
T ss_pred             hcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHhcCCCCHHHHHHHHHHhcCCcccCc
Confidence            99999999999999999999999999999754333222111    11111112223345677899999999999999999


Q ss_pred             ChHHHh
Q 042809          220 SAEELL  225 (241)
Q Consensus       220 s~~~~l  225 (241)
                      +.+.+.
T Consensus       265 ~y~~l~  270 (293)
T d1csna_         265 DYDYLQ  270 (293)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            876654


No 62 
>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=1.6e-39  Score=257.95  Aligned_cols=228  Identities=25%  Similarity=0.379  Sum_probs=163.1

Q ss_pred             CCCCCcEEEEEeccchH-HHHHHHHHHHHHhhcCC-----------Ccccc-------cCCceeeeeecccCCCC-HHHH
Q 042809            2 NKGTGALFVVKSAESEA-GVQALRNEAEIRQSLNS-----------PNIGR-------NGEKTVNIFMEYMAGGS-LLDV   61 (241)
Q Consensus         2 ~~~~~~~vaiK~~~~~~-~~~~~~~e~~~l~~l~h-----------~~i~~-------~~~~~~~lv~e~~~~~~-L~~~   61 (241)
                      |+.+|+.||||+++.+. ..+.+.+|+.+++.+.|           +||++       ......+++++++..+. ....
T Consensus        34 ~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (362)
T d1q8ya_          34 DMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLAL  113 (362)
T ss_dssp             ETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCCCEEHHHH
T ss_pred             ECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccccceeeeeeecccccccccc
Confidence            67899999999988653 35678899999988865           45555       23344556666654433 3333


Q ss_pred             HH-HhCCCCCHHHHHHHHHHH------hhc-CCccccCCCCCcEEeecCCC------eeecCCCcchhhcccccCCcccc
Q 042809           62 AE-KFGGTLDAGVIRLYTKEI------LHG-NGILHCDLKCNNVLLGSHGD------VKLPDLGCARRVNDLKNNGNLKQ  127 (241)
Q Consensus        62 l~-~~~~~~~~~~~~~~~~~~------Lh~-~~~vH~dl~p~Nil~~~~~~------~kl~dfg~~~~~~~~~~~~~~~~  127 (241)
                      .. .....+++..+..++.|+      ||+ .|++||||||+||+++.++.      ++++|||.+......        
T Consensus       114 ~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~--------  185 (362)
T d1q8ya_         114 IKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEH--------  185 (362)
T ss_dssp             HHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBC--------
T ss_pred             cccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCcccccceeeEeecccccccccc--------
Confidence            33 234678888888777765      687 99999999999999987654      899999998754331        


Q ss_pred             ccccccCcccccCcccccccCCCchhhHHHHHHHHHHHHhCCCCCccchhchH-------HHHHHHHh------------
Q 042809          128 SWQSIGGTQLWMAPEVLRNEGLDFATDIWSLGCMVIEMATGRPPWGDKISNAA-------ATLLKIAC------------  188 (241)
Q Consensus       128 ~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~-------~~~~~~~~------------  188 (241)
                       .....|++.|+|||.+.+..++.++|+||+|++++++++|+.||........       ........            
T Consensus       186 -~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~  264 (362)
T d1q8ya_         186 -YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKY  264 (362)
T ss_dssp             -CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTT
T ss_pred             -cccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccc
Confidence             1335689999999999999999999999999999999999999964322110       00000000            


Q ss_pred             ----c---------------------CCCCCCChhhHHHHHHHHHHhhccCCCCCCChHHHhcCCCCCCCCccCC
Q 042809          189 ----S---------------------NEKPHFPTQFFKKVLDFLAKCLERKPEKRWSAEELLNHTFISGNAKKNS  238 (241)
Q Consensus       189 ----~---------------------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~p~~~~~~~~~~  238 (241)
                          .                     ......+...++.+.+|+.+||..||.+|||++|+|+||||++....++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~Hp~f~~~~~~~~  339 (362)
T d1q8ya_         265 TRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGMEE  339 (362)
T ss_dssp             HHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCTTCTT
T ss_pred             cccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcCcccCCCCCccc
Confidence                0                     0011234556788999999999999999999999999999996654433


No 63 
>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.72  E-value=6.2e-19  Score=126.34  Aligned_cols=111  Identities=21%  Similarity=0.182  Sum_probs=74.6

Q ss_pred             CCCcEEEEEeccch--------------------HHHHHHHHHHHHHhhcCCCcccc-cCCceeeeeecccCCCCHHHHH
Q 042809            4 GTGALFVVKSAESE--------------------AGVQALRNEAEIRQSLNSPNIGR-NGEKTVNIFMEYMAGGSLLDVA   62 (241)
Q Consensus         4 ~~~~~vaiK~~~~~--------------------~~~~~~~~e~~~l~~l~h~~i~~-~~~~~~~lv~e~~~~~~L~~~l   62 (241)
                      .+|+.||||+++..                    .......+|...+.++.|.++.. ......+++|||++++.+.++.
T Consensus        22 ~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~~~~lvme~~~~~~~~~l~  101 (191)
T d1zara2          22 EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWEGNAVLMELIDAKELYRVR  101 (191)
T ss_dssp             TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEETTEEEEECCCCEEGGGCC
T ss_pred             CCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEecCCEEEEEeeccccccchh
Confidence            47899999975421                    11233567888999999999877 2223347999999887654321


Q ss_pred             HHhCCCCCHHHHHHHHHHHhhcCCccccCCCCCcEEeecCCCeeecCCCcchhhc
Q 042809           63 EKFGGTLDAGVIRLYTKEILHGNGILHCDLKCNNVLLGSHGDVKLPDLGCARRVN  117 (241)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~Lh~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~~~  117 (241)
                      ..  ...........+.++||++|++||||||+||+++.+ .++|+|||.+....
T Consensus       102 ~~--~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~-~~~liDFG~a~~~~  153 (191)
T d1zara2         102 VE--NPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEE-GIWIIDFPQSVEVG  153 (191)
T ss_dssp             CS--CHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEETT-EEEECCCTTCEETT
T ss_pred             hH--HHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeCC-CEEEEECCCcccCC
Confidence            10  101111122223356899999999999999999854 58999999986543


No 64 
>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}
Probab=98.01  E-value=4.3e-06  Score=61.26  Aligned_cols=57  Identities=14%  Similarity=0.131  Sum_probs=37.9

Q ss_pred             CCcEEEEEeccchH--HHHHHHHHHHHHhhcC----CCcccc--cCCceeeeeecccCCCCHHHH
Q 042809            5 TGALFVVKSAESEA--GVQALRNEAEIRQSLN----SPNIGR--NGEKTVNIFMEYMAGGSLLDV   61 (241)
Q Consensus         5 ~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~----h~~i~~--~~~~~~~lv~e~~~~~~L~~~   61 (241)
                      ++..+++|......  ....+.+|...+..+.    -|.++.  ..++..++||++++|.++.+.
T Consensus        36 ~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~~~l~G~~~~~~  100 (263)
T d1j7la_          36 ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEE  100 (263)
T ss_dssp             SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEEHHHH
T ss_pred             CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEEEeccccccccc
Confidence            45667788765432  2345678888877664    344444  456788999999998877543


No 65 
>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}
Probab=97.91  E-value=5.8e-06  Score=60.23  Aligned_cols=54  Identities=19%  Similarity=0.190  Sum_probs=37.5

Q ss_pred             CCCcEEEEEeccchHHHHHHHHHHHHHhhcCCCcc-----cc--cCCceeeeeecccCCCCH
Q 042809            4 GTGALFVVKSAESEAGVQALRNEAEIRQSLNSPNI-----GR--NGEKTVNIFMEYMAGGSL   58 (241)
Q Consensus         4 ~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~--~~~~~~~lv~e~~~~~~L   58 (241)
                      ..+..+++|...... ...+..|+..++.+....+     +.  ..++..++||++++|.++
T Consensus        33 ~~~~~~vlK~~~~~~-~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          33 QGRPVLFVKTDLSGA-LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             TTSCCEEEEEECSCT-TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred             CCCCEEEEEeCCccC-HhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccc
Confidence            456778899866443 3457788888877753333     32  566788999999988665


No 66 
>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}
Probab=97.50  E-value=0.0001  Score=55.60  Aligned_cols=54  Identities=17%  Similarity=0.115  Sum_probs=37.1

Q ss_pred             CCCCcEEEEEeccch-HHHHHHHHHHHHHhhcCCCcc-----cc-------cCCceeeeeecccCCC
Q 042809            3 KGTGALFVVKSAESE-AGVQALRNEAEIRQSLNSPNI-----GR-------NGEKTVNIFMEYMAGG   56 (241)
Q Consensus         3 ~~~~~~vaiK~~~~~-~~~~~~~~e~~~l~~l~h~~i-----~~-------~~~~~~~lv~e~~~~~   56 (241)
                      .++|..||+|+.+.. ...+++..|...+..|....+     +.       ..++..+.+++++.|.
T Consensus        43 ~~dg~~~VlK~~rp~~~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~  109 (325)
T d1zyla1          43 DEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGR  109 (325)
T ss_dssp             CTTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCE
T ss_pred             cCCCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCCc
Confidence            467889999998743 245668888888887753222     11       3455678889999764


No 67 
>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}
Probab=97.13  E-value=0.00044  Score=53.44  Aligned_cols=30  Identities=23%  Similarity=0.371  Sum_probs=25.3

Q ss_pred             CCccccCCCCCcEEeecCCCeeecCCCcchh
Q 042809           85 NGILHCDLKCNNVLLGSHGDVKLPDLGCARR  115 (241)
Q Consensus        85 ~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~~  115 (241)
                      ..++|||+++.||+++.+ .++|+||..+..
T Consensus       223 ~~LiHGDl~~gNIlv~~~-~~~vID~E~a~~  252 (392)
T d2pula1         223 ETLIHGDLHTGSIFASEH-ETKVIDPEFAFY  252 (392)
T ss_dssp             CEEECSCCCGGGEEECSS-CEEECCCTTCEE
T ss_pred             cceeccCCcCCceeEcCC-ceEEechhhccc
Confidence            358999999999999765 489999988753


No 68 
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}
Probab=96.44  E-value=0.0015  Score=50.37  Aligned_cols=53  Identities=17%  Similarity=0.144  Sum_probs=31.4

Q ss_pred             CcEEEEEeccchHHHHHHHHHHHHHhhcCCCcccc--cCCceeeeeecccCCCCH
Q 042809            6 GALFVVKSAESEAGVQALRNEAEIRQSLNSPNIGR--NGEKTVNIFMEYMAGGSL   58 (241)
Q Consensus         6 ~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~--~~~~~~~lv~e~~~~~~L   58 (241)
                      .+.|++.+...........+|..+++.+.-.++++  ..-..-..|+||++|.+|
T Consensus        74 ~~~vllRi~g~~~~~idr~~E~~i~~~ls~~gl~Pkll~~~~~g~I~efi~g~~l  128 (395)
T d1nw1a_          74 PNKVLLRVYFNPETESHLVAESVIFTLLSERHLGPKLYGIFSGGRLEEYIPSRPL  128 (395)
T ss_dssp             CSEEEEEEECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETTEEEECCCCEEEC
T ss_pred             CCcEEEEecCCcchhhHHHHHHHHHHHHHhCCCCCeEEEEcCCceEEEEeccccC
Confidence            45566776654333445668888888876445544  111112578899987544


No 69 
>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}
Probab=96.12  E-value=0.00072  Score=50.46  Aligned_cols=31  Identities=29%  Similarity=0.286  Sum_probs=27.4

Q ss_pred             cCCccccCCCCCcEEeecCCCeeecCCCcch
Q 042809           84 GNGILHCDLKCNNVLLGSHGDVKLPDLGCAR  114 (241)
Q Consensus        84 ~~~~vH~dl~p~Nil~~~~~~~kl~dfg~~~  114 (241)
                      ..|++|+|+.++||+++.+...-|+||+.+.
T Consensus       182 ~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         182 PAGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             CEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             ccccccCCcchhhhhcccccceeEecccccc
Confidence            3679999999999999988777899999885


No 70 
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=64.45  E-value=3  Score=23.04  Aligned_cols=29  Identities=14%  Similarity=0.339  Sum_probs=23.7

Q ss_pred             HHHHHhhccCCCCCCChHHHh-----cCCCCCCC
Q 042809          205 DFLAKCLERKPEKRWSAEELL-----NHTFISGN  233 (241)
Q Consensus       205 ~li~~~l~~~p~~Rps~~~~l-----~~p~~~~~  233 (241)
                      .||..++...|.+|.|+.|+.     ..|||+..
T Consensus         3 ~LI~~Ai~~sp~~~ltL~eIy~~i~~~fpy~r~~   36 (75)
T d1kq8a_           3 ALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGS   36 (75)
T ss_dssp             HHHHHHHTTSSSSCBCHHHHHHHHHHHCTTGGGT
T ss_pred             HHHHHHHHhCCCCCccHHHHHHHHHHhCcccccC
Confidence            578888888999999999985     46998754


No 71 
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.90  E-value=5.8  Score=22.38  Aligned_cols=33  Identities=15%  Similarity=0.445  Sum_probs=26.5

Q ss_pred             HHHHHHHhhccCCCCCCChHHHh-----cCCCCCCCCc
Q 042809          203 VLDFLAKCLERKPEKRWSAEELL-----NHTFISGNAK  235 (241)
Q Consensus       203 ~~~li~~~l~~~p~~Rps~~~~l-----~~p~~~~~~~  235 (241)
                      ...||...+.-.|..|.|+.||-     ..|||+....
T Consensus        10 Y~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fPyyr~~~~   47 (85)
T d3bpya1          10 YAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGD   47 (85)
T ss_dssp             HHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTT
T ss_pred             HHHHHHHHHHhCCCCCccHHHHHHHHHHhChhhhccCc
Confidence            55788888888899999999984     4699986643


No 72 
>d1e7ua4 d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (PI3K), catalytic domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=48.46  E-value=4.9  Score=29.81  Aligned_cols=26  Identities=19%  Similarity=0.323  Sum_probs=22.2

Q ss_pred             cCCCCCcEEeecCCCeeecCCCcchh
Q 042809           90 CDLKCNNVLLGSHGDVKLPDLGCARR  115 (241)
Q Consensus        90 ~dl~p~Nil~~~~~~~kl~dfg~~~~  115 (241)
                      ||=+++||+++.+|.+.=+|||....
T Consensus       220 gDRH~~NILi~~~G~l~HIDFG~il~  245 (369)
T d1e7ua4         220 GDRHNDNIMISETGNLFHIDFGHILG  245 (369)
T ss_dssp             CCCCGGGEEEETTCCEEECCCCCC--
T ss_pred             CCCCCCeeEEeCCCCEEecchhhhhc
Confidence            58889999999999999999998864


No 73 
>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain {Physarum polycephalum [TaxId: 5791]}
Probab=46.86  E-value=43  Score=23.99  Aligned_cols=106  Identities=17%  Similarity=0.253  Sum_probs=58.2

Q ss_pred             cEEEEEeccchHHHHHHHHHHHHHhhcCCCcccc---------------------------cCCceeeeeecccCCCCHH
Q 042809            7 ALFVVKSAESEAGVQALRNEAEIRQSLNSPNIGR---------------------------NGEKTVNIFMEYMAGGSLL   59 (241)
Q Consensus         7 ~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~---------------------------~~~~~~~lv~e~~~~~~L~   59 (241)
                      ..+++|.-. ....+.+..++...-.+..|...-                           .......++|||.+|.+|.
T Consensus        92 gaiVlK~s~-tta~E~y~~eLAr~LGvpvPqmRvI~~~~~E~~~~~~~~l~~~e~d~~I~sel~~A~~liMeYvpG~~l~  170 (342)
T d1cjaa_          92 GVFIVKRST-NIESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAIDKSFRVITTLANQANILLMELVRGITLN  170 (342)
T ss_dssp             CEEEEECCT-THHHHHHHHHHHHHHTCCCCCEEEEESSSHHHHHHHHHHHHHCSSSCHHHHHTTCSEEEEEECCCEEEST
T ss_pred             ceEEEecCC-chHHHHHHHHHHHHhCCCCCceEEecCCCHHHHHHHHHHhcCCChhHHHHHHHhcccceeeeccCCcccc
Confidence            445566533 344566777776666676666411                           2334577899999988775


Q ss_pred             HHHHHh-CCCCCHHHHH----HHHHHH-hhc---CCccccC-CCCCcEEeecCC-CeeecCCCcc
Q 042809           60 DVAEKF-GGTLDAGVIR----LYTKEI-LHG---NGILHCD-LKCNNVLLGSHG-DVKLPDLGCA  113 (241)
Q Consensus        60 ~~l~~~-~~~~~~~~~~----~~~~~~-Lh~---~~~vH~d-l~p~Nil~~~~~-~~kl~dfg~~  113 (241)
                      +.-... ...+....+.    .++.++ ++.   -.+.+++ =++.|++++.++ .+..+|=+..
T Consensus       171 e~~~~~a~~~fs~~~l~~LGkIiaFDifInN~DR~PL~Wrn~GN~~Niml~~n~~~~~~IDs~i~  235 (342)
T d1cjaa_         171 KLTTTSAPEVLTKSTMQQLGSLMALDVIVNNSDRLPIAWTNEGNLDNIMLSERGATVVPIDSKII  235 (342)
T ss_dssp             TCCSSSHHHHSCHHHHHHHHHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEESBTTCEEECSCCCC
T ss_pred             ccccccchhhhcHHHHHHhhhHHHHHHHHcCCccccccccCCCCccceEEecCCcEEEEecCCcc
Confidence            432110 0012233332    233344 343   2344442 289999998877 4677774443


No 74 
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.14  E-value=8.5  Score=22.33  Aligned_cols=31  Identities=10%  Similarity=0.304  Sum_probs=24.8

Q ss_pred             HHHHHHHhhccCCCCCCChHHHh-----cCCCCCCC
Q 042809          203 VLDFLAKCLERKPEKRWSAEELL-----NHTFISGN  233 (241)
Q Consensus       203 ~~~li~~~l~~~p~~Rps~~~~l-----~~p~~~~~  233 (241)
                      ...||..++.-.|..|.|+.||-     ..|||+..
T Consensus         8 Y~~LI~~Ai~~sp~~~ltL~eIy~~i~~~fpyfr~~   43 (98)
T d2c6ya1           8 YAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTA   43 (98)
T ss_dssp             HHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTT
T ss_pred             HHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccC
Confidence            45778888888999999999983     56899765


No 75 
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.18  E-value=7.2  Score=22.83  Aligned_cols=28  Identities=14%  Similarity=0.132  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHhhccCCCCCCChHHHhcC
Q 042809          200 FKKVLDFLAKCLERKPEKRWSAEELLNH  227 (241)
Q Consensus       200 ~~~~~~li~~~l~~~p~~Rps~~~~l~~  227 (241)
                      -..+++.|..+|..+|....|.+++..+
T Consensus        39 Yl~iRN~Il~~w~~np~~~Lt~~~~~~~   66 (102)
T d2dw4a1          39 FLFIRNRTLQLWLDNPKIQLTFEATLQQ   66 (102)
T ss_dssp             HHHHHHHHHHHHHHCTTBCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCeeeeHHHHHhh
Confidence            4578999999999999999999998654


No 76 
>d2fq3a1 a.4.1.18 (A:311-395) Transcription regulatory protein swi3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.59  E-value=27  Score=19.39  Aligned_cols=31  Identities=10%  Similarity=0.310  Sum_probs=26.2

Q ss_pred             hhhHHHHHHHHHHhhccCCCCCCChHHHhcC
Q 042809          197 TQFFKKVLDFLAKCLERKPEKRWSAEELLNH  227 (241)
Q Consensus       197 ~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~  227 (241)
                      +..-..+++.|-++|..+|....|.+++..+
T Consensus        30 ~~~Yl~iRN~Il~~w~~np~~~Lt~~~~~~~   60 (85)
T d2fq3a1          30 PEVYMRYRNFMVNSYRLNPNEYFSVTTARRN   60 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCeeeeHHHHHhh
Confidence            3455689999999999999999999998753


No 77 
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=24.90  E-value=24  Score=14.88  Aligned_cols=10  Identities=30%  Similarity=1.208  Sum_probs=5.5

Q ss_pred             HHHHHHHHHH
Q 042809          156 WSLGCMVIEM  165 (241)
Q Consensus       156 ~slG~~l~~l  165 (241)
                      |.+|.++..+
T Consensus        20 wglgalllki   29 (32)
T d2e74f1          20 WGLGVLLLKI   29 (32)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHhhh
Confidence            5566655443


No 78 
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.90  E-value=31  Score=19.62  Aligned_cols=30  Identities=13%  Similarity=0.383  Sum_probs=23.6

Q ss_pred             HHHHHHHhhccCCCCCCChHHHh-----cCCCCCC
Q 042809          203 VLDFLAKCLERKPEKRWSAEELL-----NHTFISG  232 (241)
Q Consensus       203 ~~~li~~~l~~~p~~Rps~~~~l-----~~p~~~~  232 (241)
                      ...||..++.-.|..|.|+.|+-     ..|||+.
T Consensus         9 Ya~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyfr~   43 (94)
T d1d5va_           9 YIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRE   43 (94)
T ss_dssp             HHHHHHHHHHTCSSSSBCHHHHHHHHHHHCTHHHH
T ss_pred             HHHHHHHHHHhCCCCCccHHHHHHHHHHHCCccCc
Confidence            45788888888999999999985     4477764


No 79 
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.71  E-value=35  Score=19.51  Aligned_cols=30  Identities=7%  Similarity=0.298  Sum_probs=23.1

Q ss_pred             HHHHHHHhhccCCCCCCChHHHh-----cCCCCCC
Q 042809          203 VLDFLAKCLERKPEKRWSAEELL-----NHTFISG  232 (241)
Q Consensus       203 ~~~li~~~l~~~p~~Rps~~~~l-----~~p~~~~  232 (241)
                      ...||..++.-.|..|.|+.||-     ..|||+.
T Consensus         7 Y~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyfr~   41 (97)
T d2hdca_           7 YIALITMAILQSPQKKLTLSGICEFISNRFPYYRE   41 (97)
T ss_dssp             HHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHhCCCcCccHHHHHHHHHHhCccccC
Confidence            45788888888999999999983     4466654


Done!