BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042810
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P30631|YOUD_CAEEL Uncharacterized RING finger protein ZK637.14 OS=Caenorhabditis
elegans GN=ZK637.14 PE=4 SV=2
Length = 161
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 143 VEMLSRKQRRVLDLDFNKLVKAGDNCAVCLEEL----------IAKEEIKGQTTEKKTQL 192
++ S K R++D + K CA+CL+ L + KEE+K T T +
Sbjct: 47 IDKKSYKALRLMDRETTDQQKEDATCAICLDNLQNNVDIPEDHVIKEELKIDPTTFGTTV 106
Query: 193 ITMPCHHIFHASCISRWLEEQNSCPMCRRQIQ 224
I MPC H FH C++ WLE Q +CP CR++++
Sbjct: 107 IVMPCKHRFHYFCLTLWLEAQQTCPTCRQKVK 138
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 24/129 (18%)
Query: 99 QGAFYLSSGGLTGFHLSADVEVVEIEVVEDEIERSERKEASRFVVEMLSRKQRRVLDLDF 158
+GA+ + GG + F+ D E + + E + A++ VVE L R
Sbjct: 32 RGAWSWAPGGRSLFN-RMDFEDLGLVDWEHHLP----PPAAKAVVESLPRT--------V 78
Query: 159 NKLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPM 218
KA C VCL E A+E + I MPCHH+FH++CI WL + NSCP+
Sbjct: 79 ISSAKADLKCPVCLLEFEAEETV-----------IEMPCHHLFHSNCILPWLSKTNSCPL 127
Query: 219 CRRQIQYED 227
CR ++ +D
Sbjct: 128 CRHELPTDD 136
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 29/128 (22%)
Query: 111 GFHLSADV---------EVVEIEVVEDEIERSERKEASRFVVEMLS--RKQRRVLDLDFN 159
GF L A++ E + ++ E++ R AS+ +E L + L+ +FN
Sbjct: 163 GFRLPANIGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFN 222
Query: 160 KLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMC 219
+ CAVC+++ E+ T+ MPC H++H C+ WLE NSCP+C
Sbjct: 223 Q-------CAVCMDDF-----------EEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVC 264
Query: 220 RRQIQYED 227
R ++ +D
Sbjct: 265 RHELPTDD 272
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 20/123 (16%)
Query: 107 GGLTGFHLSADVEVVEIEVVEDEIERSERKEASRFVVEMLS--RKQRRVLDLDFNKLVKA 164
G + +E + ++ E++ R AS+ ++ L + + +L + N+
Sbjct: 160 GNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQ---- 215
Query: 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQ 224
CAVC++E ++K MPC H+FH C+ WLE NSCP+CR ++
Sbjct: 216 ---CAVCMDEFEDGSDVK-----------QMPCKHVFHQDCLLPWLELHNSCPVCRFELP 261
Query: 225 YED 227
+D
Sbjct: 262 TDD 264
>sp|Q9M0R6|ATL35_ARATH Putative RING-H2 finger protein ATL35 OS=Arabidopsis thaliana
GN=ATL35 PE=3 SV=1
Length = 302
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 18/106 (16%)
Query: 116 ADVEVVEIEVVEDEIERSERKE-ASRFVVEMLSRKQRRVLDLDFNKLVKAGDNCAVCLEE 174
A+VE EV R KE F + + S ++ K+ K G CA+CL E
Sbjct: 77 AEVEAASQEVFHSRARRGLEKELVESFPIFLYS-------EVKGLKIGKGGVECAICLSE 129
Query: 175 LIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCR 220
+ KE ++ PC H FHA+CI WL Q++CP CR
Sbjct: 130 FVDKETLRWMP----------PCSHTFHANCIDVWLSSQSTCPACR 165
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 11/66 (16%)
Query: 162 VKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRR 221
V G C VC E+ +EE++ +PC+H FH+SCI WLE ++CP+CR+
Sbjct: 222 VDMGLECPVCKEDYTVEEEVR-----------QLPCNHFFHSSCIVPWLELHDTCPVCRK 270
Query: 222 QIQYED 227
+ ED
Sbjct: 271 SLNGED 276
>sp|Q8BP31|RN122_MOUSE RING finger protein 122 OS=Mus musculus GN=Rnf122 PE=2 SV=1
Length = 155
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 153 VLDLDFNKLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEE 212
VL D KL G CAVCLE+ K+E+ +PC H FH C+ +WLE
Sbjct: 78 VLKGDAKKLQLYGQTCAVCLEDFKGKDELG-----------VLPCQHAFHRKCLVKWLEV 126
Query: 213 QNSCPMCRRQI 223
+ CPMC + I
Sbjct: 127 RCVCPMCNKPI 137
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 11/66 (16%)
Query: 162 VKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRR 221
V G C VC E+ +E+++ +PC+H FH+SCI WLE ++CP+CR+
Sbjct: 223 VNTGLECPVCKEDYTVEEKVR-----------QLPCNHFFHSSCIVPWLELHDTCPVCRK 271
Query: 222 QIQYED 227
+ ED
Sbjct: 272 SLNGED 277
>sp|Q9H9V4|RN122_HUMAN RING finger protein 122 OS=Homo sapiens GN=RNF122 PE=2 SV=2
Length = 155
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 153 VLDLDFNKLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEE 212
VL D KL G CAVCLE+ K+E+ +PC H FH C+ +WLE
Sbjct: 78 VLKGDAKKLQLYGQTCAVCLEDFKGKDELG-----------VLPCQHAFHRKCLVKWLEV 126
Query: 213 QNSCPMCRRQI 223
+ CPMC + I
Sbjct: 127 RCVCPMCNKPI 137
>sp|Q6NRX0|RN149_XENLA E3 ubiquitin-protein ligase RNF149 OS=Xenopus laevis GN=rnf149 PE=2
SV=1
Length = 397
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 21/95 (22%)
Query: 132 RSERKEASRFVVEML---SRKQRRVLDLDFNKLVKAGDNCAVCLEELIAKEEIKGQTTEK 188
+S RKE + + ++ +K + +D+D +NCAVC+E K+ ++
Sbjct: 232 QSNRKETKKAISQLQLHRVKKGEKGIDID-------AENCAVCIENYKTKDLVR------ 278
Query: 189 KTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQI 223
+PC HIFH CI WL E +CPMC+ +
Sbjct: 279 -----ILPCKHIFHRLCIDPWLIEHRTCPMCKLDV 308
>sp|Q6AXU4|RN181_RAT E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181
PE=1 SV=1
Length = 165
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 24/129 (18%)
Query: 99 QGAFYLSSGGLTGFHLSADVEVVEIEVVEDEIERSERKEASRFVVEMLSRKQRRVLDLDF 158
+GA+ + G + F+ D E + + E + A++ VVE L R R
Sbjct: 32 RGAWSWAPGSRSLFN-RMDFEDLGLVDWEHHLP----PPAAKAVVESLPRTVIRS----- 81
Query: 159 NKLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPM 218
KA C VCL E++ +I MPCHH+FH++CI WL + NSCP+
Sbjct: 82 ---SKAELKCPVCL-----------LEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPL 127
Query: 219 CRRQIQYED 227
CR ++ +D
Sbjct: 128 CRHELPTDD 136
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Query: 166 DNCAVCLEELIAKEEIKGQTTEKKTQLITMP-CHHIFHASCISRWLEEQNSCPMCRRQI 223
D+C+VCL++ E ++ ++P CHH+FH CI WL SCPMCRR I
Sbjct: 194 DSCSVCLQDFQLGETVR-----------SLPHCHHMFHLPCIDNWLLRHGSCPMCRRDI 241
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 13/69 (18%)
Query: 159 NKLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPM 218
++L + D CA+C E I PC+H FHA C+ +WL Q++CPM
Sbjct: 538 SRLQEINDVCAICYHEFTTSARIT-------------PCNHYFHALCLRKWLYIQDTCPM 584
Query: 219 CRRQIQYED 227
C +++ ED
Sbjct: 585 CHQKVYIED 593
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 13/69 (18%)
Query: 159 NKLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPM 218
++L + D CA+C E I PC+H FHA C+ +WL Q++CPM
Sbjct: 538 SRLQEINDVCAICYHEFTTSARIT-------------PCNHYFHALCLRKWLYIQDTCPM 584
Query: 219 CRRQIQYED 227
C +++ ED
Sbjct: 585 CHQKVYIED 593
>sp|Q8NC42|RN149_HUMAN E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens GN=RNF149 PE=2
SV=2
Length = 400
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 21/95 (22%)
Query: 132 RSERKEASRFVVEML---SRKQRRVLDLDFNKLVKAGDNCAVCLEELIAKEEIKGQTTEK 188
+S RKE + + ++L + + +D+D +NCAVC+E K+ I+
Sbjct: 237 QSHRKETKKVIGQLLLHTVKHGEKGIDVD-------AENCAVCIENFKVKDIIR------ 283
Query: 189 KTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQI 223
+PC HIFH CI WL + +CPMC+ +
Sbjct: 284 -----ILPCKHIFHRICIDPWLLDHRTCPMCKLDV 313
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 15/91 (16%)
Query: 143 VEMLSRKQRRVLDLDFNKLVKA---GD-NCAVCLEELIAKEEIKGQTTEKKTQLITMPCH 198
+E+ +R +L+L +++VK+ GD C+VC E E+ + +PC
Sbjct: 41 IEVPEASKRAILELPVHEIVKSDEGGDLECSVCKE-----------PAEEGQKYRILPCK 89
Query: 199 HIFHASCISRWLEEQNSCPMCRRQIQYEDLV 229
H FH CI WL++ NSCP+CR +++ +D V
Sbjct: 90 HEFHEECILLWLKKTNSCPLCRYELETDDPV 120
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Query: 160 KLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMC 219
K+ K G CA+CL E +E ++ + PC H FHASCI WL +++CP+C
Sbjct: 120 KIGKGGVECAICLNEFEDEETLR----------LMPPCSHAFHASCIDVWLSSRSTCPVC 169
Query: 220 RRQI 223
R +
Sbjct: 170 RASL 173
>sp|Q9P0P0|RN181_HUMAN E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1
SV=1
Length = 153
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 193 ITMPCHHIFHASCISRWLEEQNSCPMCRRQIQYED 227
I MPCHH+FH+SCI WL + NSCP+CR ++ +D
Sbjct: 90 IEMPCHHLFHSSCILPWLSKTNSCPLCRYELPTDD 124
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 27/149 (18%)
Query: 79 ELVTLNLDHMLCVFLHQHLAQGAFYLSSGGLTGFHLSADVEVVEIEVVEDEIERSERKEA 138
EL L+LD M + + L G +LS L F +++ + E++R R+
Sbjct: 265 ELTLLSLDLMHHIHM---LLFGNIWLSMASLVIF--------MQLRYLFHEVQRRIRRHK 313
Query: 139 SRFVVEMLSRKQRRVLDLDFNKLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCH 198
+ + ++ + R +L D+CA+C + + A + +PC
Sbjct: 314 N--YLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARK--------------LPCG 357
Query: 199 HIFHASCISRWLEEQNSCPMCRRQIQYED 227
H+FH SC+ WLE+ SCP CR + D
Sbjct: 358 HLFHNSCLRSWLEQDTSCPTCRMSLNIAD 386
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 17/71 (23%)
Query: 154 LDLDFNKLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMP-CHHIFHASCISRWLEE 212
LD NK D+C+VCL++ E ++ ++P CHH+FH CI WL
Sbjct: 182 LDASGNK-----DSCSVCLQDFQLGETVR-----------SLPHCHHMFHLPCIDNWLFR 225
Query: 213 QNSCPMCRRQI 223
SCPMCRR +
Sbjct: 226 HGSCPMCRRDL 236
>sp|Q9R049|AMFR_MOUSE E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2
Length = 643
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 27/149 (18%)
Query: 79 ELVTLNLDHMLCVFLHQHLAQGAFYLSSGGLTGFHLSADVEVVEIEVVEDEIERSERKEA 138
EL L+LD M + + L G +LS L F +++ + E++R R+
Sbjct: 265 ELALLSLDLMHHIHM---LLFGNIWLSMASLVIF--------MQLRYLFHEVQRRIRRHK 313
Query: 139 SRFVVEMLSRKQRRVLDLDFNKLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCH 198
+ V + + R +L D+CA+C + + A + +PC
Sbjct: 314 NYLRV--VGNMEARFAVATPEELAVNNDDCAICWDSMQAARK--------------LPCG 357
Query: 199 HIFHASCISRWLEEQNSCPMCRRQIQYED 227
H+FH SC+ WLE+ SCP CR + D
Sbjct: 358 HLFHNSCLRSWLEQDTSCPTCRMSLNIAD 386
>sp|Q3T0W3|RN181_BOVIN E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2
SV=1
Length = 153
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 193 ITMPCHHIFHASCISRWLEEQNSCPMCRRQIQYED 227
I MPCHH+FH++CI WL + NSCP+CR ++ +D
Sbjct: 90 IEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDD 124
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 11/62 (17%)
Query: 162 VKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRR 221
V +G C VC E+ E ++ +PC+H+FH SCI WLE+ +SCP+CR+
Sbjct: 225 VGSGLECPVCKEDYALGESVR-----------QLPCNHLFHDSCIVPWLEQHDSCPVCRK 273
Query: 222 QI 223
+
Sbjct: 274 SL 275
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Query: 166 DNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQY 225
D CA+C E I PC+H FHA C+ +WL Q++CPMC +++
Sbjct: 545 DVCAICYHEFTTSARIT-------------PCNHYFHALCLRKWLYIQDTCPMCHQKVYI 591
Query: 226 ED 227
ED
Sbjct: 592 ED 593
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 24/99 (24%)
Query: 131 ERSERK--EASRFVVEMLS----RKQRRVLDLDFNKLVKAGDNCAVCLEELIAKEEIKGQ 184
+R++R+ +A++ + L+ +K + D DF D+CAVC+E + ++
Sbjct: 228 DRNQRRLGDAAKKAISKLTTRTVKKGDKETDPDF-------DHCAVCIESYKQNDVVR-- 278
Query: 185 TTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQI 223
+PC H+FH SC+ WL E +CPMC+ I
Sbjct: 279 ---------VLPCKHVFHKSCVDPWLSEHCTCPMCKLNI 308
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 132 RSERKEASRFVVEMLSRKQRRVLDLDFNKLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQ 191
+S R F+ +LSR+ ++ F +V A D A+ +I +EE+ + K+
Sbjct: 251 QSVRALHKAFLDVILSRRAINAMNSQF-PVVSAEDLAAMDATCIICREEMTVDASPKR-- 307
Query: 192 LITMPCHHIFHASCISRWLEEQNSCPMCRRQI 223
+PC H+FHA C+ W + Q +CP CR I
Sbjct: 308 ---LPCSHVFHAHCLRSWFQRQQTCPTCRTDI 336
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 24/99 (24%)
Query: 131 ERSERK--EASRFVVEMLS----RKQRRVLDLDFNKLVKAGDNCAVCLEELIAKEEIKGQ 184
+R++R+ +A++ + L+ +K + D DF D+CAVC+E + ++
Sbjct: 228 DRNQRRLGDAAKKAISKLTTRTVKKGDKETDPDF-------DHCAVCIESYKQNDVVR-- 278
Query: 185 TTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQI 223
+PC H+FH SC+ WL E +CPMC+ I
Sbjct: 279 ---------VLPCKHVFHKSCVDPWLSEHCTCPMCKLNI 308
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 24/99 (24%)
Query: 131 ERSERK--EASRFVVEMLS----RKQRRVLDLDFNKLVKAGDNCAVCLEELIAKEEIKGQ 184
+R++R+ +A++ + L+ +K + D DF D+CAVC+E + ++
Sbjct: 228 DRNQRRLGDAAKKAISKLTTRTVKKGDKETDPDF-------DHCAVCIESYKQNDVVR-- 278
Query: 185 TTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQI 223
+PC H+FH SC+ WL E +CPMC+ I
Sbjct: 279 ---------ILPCKHVFHKSCVDPWLSEHCTCPMCKLNI 308
>sp|Q5DTZ6|RN150_MOUSE RING finger protein 150 OS=Mus musculus GN=Rnf150 PE=2 SV=2
Length = 437
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 19/91 (20%)
Query: 133 SERKEASRFVVEMLSRKQRRVLDLDFNKLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQL 192
+ +K S+ V + RK + + DF DNCAVC+E + ++
Sbjct: 250 AAKKAISKLQVRTI-RKGDKETESDF-------DNCAVCIEGYKPNDVVR---------- 291
Query: 193 ITMPCHHIFHASCISRWLEEQNSCPMCRRQI 223
+PC H+FH SC+ WL + +CPMC+ I
Sbjct: 292 -ILPCRHLFHKSCVDPWLLDHRTCPMCKMNI 321
>sp|Q8TEB7|RN128_HUMAN E3 ubiquitin-protein ligase RNF128 OS=Homo sapiens GN=RNF128 PE=1
SV=1
Length = 428
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 101 AFYLSSGGLTGFHLSADVEVVEIEVVEDEIERSERKEASRFVVEMLSRKQRRVLDLDFNK 160
+F++ + G+ + + + +R + +A + + R Q R L +
Sbjct: 214 SFFIITAATVGYFIFYSARRLRNARAQSRKQRQLKADAKK----AIGRLQLRTLKQGDKE 269
Query: 161 LVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCR 220
+ GD+CAVC+E + ++ + C+HIFH +C+ WL E +CPMC+
Sbjct: 270 IGPDGDSCAVCIELYKPNDLVR-----------ILTCNHIFHKTCVDPWLLEHRTCPMCK 318
>sp|Q5RF74|RN128_PONAB E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii GN=RNF128 PE=2
SV=1
Length = 428
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 101 AFYLSSGGLTGFHLSADVEVVEIEVVEDEIERSERKEASRFVVEMLSRKQRRVLDLDFNK 160
+F++ + G+ + + + +R + +A + + R Q R L +
Sbjct: 214 SFFIITAATVGYFIFYSARRLRNARAQSRKQRQLKADAKK----AIGRLQLRTLKQGDRE 269
Query: 161 LVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCR 220
+ GD+CAVC+E + ++ + C+HIFH +C+ WL E +CPMC+
Sbjct: 270 IGPDGDSCAVCIELYKPNDLVR-----------ILTCNHIFHKTCVDPWLLEHRTCPMCK 318
>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9
PE=1 SV=1
Length = 378
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 160 KLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMC 219
++ K G CAVCL E E ++ + PC H+FHA C+ WL E ++CP+C
Sbjct: 127 RIGKGGVECAVCLCEFEDDETLR----------LMPPCCHVFHADCVDVWLSEHSTCPLC 176
Query: 220 RRQI 223
R +
Sbjct: 177 RADL 180
>sp|Q9M0R5|ATL36_ARATH Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana
GN=ATL36 PE=3 SV=1
Length = 345
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 160 KLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMC 219
K+ K G CA+CL E +E ++ PC H FHA+CI WL ++CP+C
Sbjct: 115 KIGKGGVECAICLSEFEDQETLRWMP----------PCSHTFHANCIDVWLSSWSTCPVC 164
Query: 220 R 220
R
Sbjct: 165 R 165
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 14/90 (15%)
Query: 138 ASRFVVEMLSRKQRRVLDLDFNKLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPC 197
AS+ VVE L + + K A C +C E L+ ++++ +PC
Sbjct: 203 ASKEVVEKLPV---IIFTEELLKKFGAEAECCICKENLVIGDKMQ-----------ELPC 248
Query: 198 HHIFHASCISRWLEEQNSCPMCRRQIQYED 227
H FH C+ WL+E NSCP+CR ++ +D
Sbjct: 249 KHTFHPPCLKPWLDEHNSCPICRHELPTDD 278
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 14/63 (22%)
Query: 162 VKAGDN-CAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCR 220
++A DN C +C EE++ T KK +PC+HIFH+SC+ W + Q +CP CR
Sbjct: 284 LQATDNVCIICREEMV--------TGAKK-----LPCNHIFHSSCLRSWFQRQQTCPTCR 330
Query: 221 RQI 223
+
Sbjct: 331 MDV 333
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 12/58 (20%)
Query: 167 NCAVCLEELIAKEEIKGQTTEKKTQLITMP-CHHIFHASCISRWLEEQNSCPMCRRQI 223
+C+VCL++ E ++ ++P CHH+FH CI +WL SCP+CRR +
Sbjct: 175 SCSVCLQDFQVGETVR-----------SLPHCHHMFHLPCIDKWLRRHASCPLCRRHL 221
>sp|Q9ULK6|RN150_HUMAN RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2
Length = 438
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
Query: 166 DNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQI 223
DNCAVC+E + ++ +PC H+FH SC+ WL + +CPMC+ I
Sbjct: 276 DNCAVCIEGYKPNDVVR-----------ILPCRHLFHKSCVDPWLLDHRTCPMCKMNI 322
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 134 ERKEASRFVVEMLSRKQRRVLDLDFNKLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLI 193
E+ E +F + R++ LD D CA+CLE+ I EE++
Sbjct: 257 EKMETRKFNSKSKGRREGSCGALDTLSSGSTSD-CAICLEKYIDGEELR----------- 304
Query: 194 TMPCHHIFHASCISRWLEEQNSCPMCRRQI 223
+PC H FH C+ WL + ++CP CR I
Sbjct: 305 VIPCTHRFHRKCVDPWLLQHHTCPHCRHNI 334
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Query: 162 VKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRR 221
V +G C VC E+ E ++ +PC+H+FH CI WLE+ ++CP+CR+
Sbjct: 221 VGSGLECPVCKEDYTVGESVR-----------QLPCNHLFHNDCIIPWLEQHDTCPVCRK 269
Query: 222 QIQYEDLV 229
+ ++
Sbjct: 270 SLSGQNTA 277
>sp|Q6NQG7|ATL78_ARATH RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2
SV=1
Length = 219
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 168 CAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCR 220
CA+CL E +A+E +K T CHH FH CI +WL +SCP CR
Sbjct: 131 CAICLSEFVAEERVKLLPT----------CHHGFHVRCIDKWLSSHSSCPTCR 173
>sp|Q9LQM2|ATL81_ARATH RING-H2 finger protein ATL81 OS=Arabidopsis thaliana GN=ATL81 PE=2
SV=1
Length = 332
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQI 223
D C++CL E + + I+ +T C+H FH CI W E +CP+CRR++
Sbjct: 150 GTDQCSICLTEFMDDDTIRLIST----------CNHSFHTICIDLWFEGHKTCPVCRREL 199
Query: 224 QYED 227
ED
Sbjct: 200 DVED 203
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 168 CAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQYE 226
C +C +++ +E Q MPC HIF +C+ +WLE +CP+CR+++ +E
Sbjct: 107 CPICYDDMNENDE---------KQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVPHE 156
>sp|Q3U2C5|RN149_MOUSE E3 ubiquitin-protein ligase RNF149 OS=Mus musculus GN=Rnf149 PE=2
SV=3
Length = 394
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 21/95 (22%)
Query: 132 RSERKEASRFVVEM---LSRKQRRVLDLDFNKLVKAGDNCAVCLEELIAKEEIKGQTTEK 188
++ RKE + + ++ + + +D+D +NCAVC+E K+ I+
Sbjct: 233 QNHRKETKKVIGQLPLHTVKHGEKGIDVD-------AENCAVCIENFKVKDVIR------ 279
Query: 189 KTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQI 223
+PC HIFH CI WL + +CPMC+ +
Sbjct: 280 -----ILPCKHIFHRICIDPWLLDHRTCPMCKLDV 309
>sp|Q9D304|RN128_MOUSE E3 ubiquitin-protein ligase RNF128 OS=Mus musculus GN=Rnf128 PE=1
SV=1
Length = 428
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 101 AFYLSSGGLTGFHLSADVEVVEIEVVEDEIERSERKEASRFVVEMLSRKQRRVLDLDFNK 160
+F++ + G+ + + + +R + +A + + + Q R L +
Sbjct: 214 SFFIITAATVGYFIFYSARRLRNARAQSRKQRQLKADAKK----AIGKLQLRTLKQGDKE 269
Query: 161 LVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCR 220
+ GD+CAVC+E + ++ + C+HIFH +C+ WL E +CPMC+
Sbjct: 270 IGPDGDSCAVCIELYKPNDLVR-----------ILTCNHIFHKTCVDPWLLEHRTCPMCK 318
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 11/54 (20%)
Query: 167 NCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCR 220
C+VCLE++ E ++ T+PC H FHA CI WL +Q +CP+C+
Sbjct: 210 TCSVCLEQVTVGEIVR-----------TLPCLHQFHAGCIDPWLRQQGTCPVCK 252
>sp|Q8AWW4|RN128_XENLA E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2
SV=2
Length = 404
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 101 AFYLSSGGLTGFHLSADVEVVEIEVVEDEIERSERKEASRFVVEMLSRKQRRVLDLDFNK 160
+F++ + G+ + + +++ ++ + EA + + + Q R +
Sbjct: 197 SFFIVTAATVGYFIFYSARRWRLTRAQNKKQKRLKAEAKK----AIGKLQLRTIKQGDKV 252
Query: 161 LVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCR 220
L GD+CAVC+E + ++ + C+H FH +CI WL E +CPMC+
Sbjct: 253 LGPDGDSCAVCIEPYKPSDVVR-----------ILTCNHFFHKNCIDPWLLEHRTCPMCK 301
>sp|Q9ULT6|ZNRF3_HUMAN E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1
SV=3
Length = 936
Score = 51.6 bits (122), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 11/56 (19%)
Query: 168 CAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQI 223
CA+CLE+ I EE++ +PC H FH C+ WL + ++CP CR I
Sbjct: 293 CAICLEKYIDGEELR-----------VIPCTHRFHRKCVDPWLLQHHTCPHCRHNI 337
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 11/56 (19%)
Query: 168 CAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQI 223
C+VC+ E + +L +PC H +H CI RWL E ++CP+CRR +
Sbjct: 570 CSVCITEYT-----------EGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 614
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 11/56 (19%)
Query: 168 CAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQI 223
C+VC+ E + +L +PC H +H CI RWL E ++CP+CRR +
Sbjct: 585 CSVCITEYT-----------EGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 629
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 162 VKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRR 221
V +G C VC ++ E ++ +PC+H+FH CI WLE+ +SCP+CR+
Sbjct: 223 VGSGLECPVCKDDYALGERVR-----------QLPCNHLFHDGCIVPWLEQHDSCPVCRK 271
Query: 222 QI 223
+
Sbjct: 272 SL 273
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,954,680
Number of Sequences: 539616
Number of extensions: 3263753
Number of successful extensions: 10195
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 181
Number of HSP's that attempted gapping in prelim test: 9666
Number of HSP's gapped (non-prelim): 583
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)