Query 042810
Match_columns 230
No_of_seqs 192 out of 1525
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 09:43:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.6 1.3E-16 2.9E-21 142.2 5.2 78 134-227 203-281 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 2E-16 4.4E-21 101.2 2.3 44 166-220 1-44 (44)
3 KOG1734 Predicted RING-contain 99.5 3.1E-15 6.8E-20 127.7 -1.4 152 54-230 133-287 (328)
4 PF12678 zf-rbx1: RING-H2 zinc 99.5 2.1E-14 4.6E-19 101.8 2.8 59 161-220 15-73 (73)
5 COG5243 HRD1 HRD ubiquitin lig 99.5 1.3E-14 2.8E-19 128.7 2.1 84 135-226 264-347 (491)
6 PHA02929 N1R/p28-like protein; 99.4 2.9E-13 6.2E-18 115.9 4.4 79 136-224 148-227 (238)
7 COG5540 RING-finger-containing 99.3 2.2E-12 4.8E-17 112.0 3.4 54 161-225 319-373 (374)
8 PF12861 zf-Apc11: Anaphase-pr 99.3 1.9E-12 4.2E-17 93.3 2.6 64 163-227 19-85 (85)
9 PF13920 zf-C3HC4_3: Zinc fing 99.2 6.5E-12 1.4E-16 82.4 2.1 46 165-224 2-48 (50)
10 PLN03208 E3 ubiquitin-protein 99.2 8.7E-12 1.9E-16 103.0 2.6 53 163-229 16-84 (193)
11 KOG0317 Predicted E3 ubiquitin 99.1 5E-11 1.1E-15 103.2 3.4 53 163-229 237-289 (293)
12 PF13923 zf-C3HC4_2: Zinc fing 99.1 7.3E-11 1.6E-15 73.4 2.5 39 168-219 1-39 (39)
13 COG5194 APC11 Component of SCF 99.1 7E-11 1.5E-15 83.4 2.0 67 161-227 16-84 (88)
14 cd00162 RING RING-finger (Real 99.0 1.4E-10 3.1E-15 72.8 3.2 44 167-223 1-45 (45)
15 KOG0802 E3 ubiquitin ligase [P 99.0 9.4E-11 2E-15 111.9 2.9 56 161-225 287-342 (543)
16 smart00504 Ubox Modified RING 99.0 2.2E-10 4.7E-15 78.2 2.8 50 166-229 2-51 (63)
17 PHA02926 zinc finger-like prot 99.0 2E-10 4.3E-15 96.3 2.2 57 162-224 167-230 (242)
18 KOG0320 Predicted E3 ubiquitin 99.0 2.1E-10 4.5E-15 93.0 1.8 54 164-229 130-183 (187)
19 PF15227 zf-C3HC4_4: zinc fing 98.9 4.5E-10 9.7E-15 71.1 2.3 38 168-219 1-42 (42)
20 KOG1493 Anaphase-promoting com 98.9 1.2E-10 2.6E-15 81.6 -1.3 66 160-227 15-84 (84)
21 KOG0823 Predicted E3 ubiquitin 98.9 4.9E-10 1.1E-14 94.4 2.0 53 163-229 45-100 (230)
22 PF14634 zf-RING_5: zinc-RING 98.9 1.1E-09 2.3E-14 70.0 2.5 44 167-221 1-44 (44)
23 KOG2930 SCF ubiquitin ligase, 98.9 8.8E-10 1.9E-14 81.5 2.4 67 160-226 41-110 (114)
24 smart00184 RING Ring finger. E 98.8 1.5E-09 3.3E-14 65.7 2.1 38 168-219 1-39 (39)
25 PF00097 zf-C3HC4: Zinc finger 98.8 1.4E-09 3E-14 68.1 1.6 39 168-219 1-41 (41)
26 TIGR00599 rad18 DNA repair pro 98.8 3.8E-09 8.2E-14 96.7 3.2 53 162-228 23-75 (397)
27 PF13445 zf-RING_UBOX: RING-ty 98.6 2.5E-08 5.4E-13 63.3 2.1 39 168-217 1-43 (43)
28 COG5574 PEX10 RING-finger-cont 98.6 2E-08 4.3E-13 86.2 1.2 53 163-229 213-267 (271)
29 PF04564 U-box: U-box domain; 98.5 5.5E-08 1.2E-12 68.8 2.5 51 165-229 4-55 (73)
30 KOG0287 Postreplication repair 98.5 3.8E-08 8.3E-13 87.0 0.9 51 164-228 22-72 (442)
31 KOG2164 Predicted E3 ubiquitin 98.4 6.2E-08 1.3E-12 89.9 1.6 51 165-229 186-241 (513)
32 smart00744 RINGv The RING-vari 98.3 2.3E-07 5E-12 60.6 1.9 42 167-220 1-49 (49)
33 COG5219 Uncharacterized conser 98.3 2.1E-07 4.5E-12 91.4 2.3 57 160-224 1464-1523(1525)
34 KOG0828 Predicted E3 ubiquitin 98.3 1.5E-07 3.3E-12 86.8 0.2 63 163-225 569-635 (636)
35 PF11793 FANCL_C: FANCL C-term 98.2 2.9E-07 6.3E-12 64.6 -0.2 53 165-225 2-67 (70)
36 KOG0804 Cytoplasmic Zn-finger 98.1 1.5E-06 3.2E-11 79.6 3.2 51 162-224 172-222 (493)
37 KOG2177 Predicted E3 ubiquitin 98.1 8.6E-07 1.9E-11 76.1 1.6 47 161-221 9-55 (386)
38 COG5432 RAD18 RING-finger-cont 98.1 9.6E-07 2.1E-11 76.9 1.4 47 165-225 25-71 (391)
39 KOG4265 Predicted E3 ubiquitin 98.1 1.2E-06 2.5E-11 78.4 1.7 48 163-224 288-336 (349)
40 PF14835 zf-RING_6: zf-RING of 98.1 1.4E-06 3.1E-11 59.5 1.3 49 165-228 7-55 (65)
41 KOG1571 Predicted E3 ubiquitin 97.9 3.5E-05 7.5E-10 69.1 6.5 54 32-85 173-229 (355)
42 KOG1785 Tyrosine kinase negati 97.8 2.3E-06 4.9E-11 77.4 -1.7 56 158-227 362-419 (563)
43 KOG1039 Predicted E3 ubiquitin 97.8 8.2E-06 1.8E-10 73.6 1.5 54 163-223 159-220 (344)
44 KOG0978 E3 ubiquitin ligase in 97.7 6.7E-06 1.5E-10 79.7 0.2 51 164-228 642-693 (698)
45 KOG0825 PHD Zn-finger protein 97.7 6.4E-06 1.4E-10 79.9 0.0 50 165-225 123-172 (1134)
46 KOG4172 Predicted E3 ubiquitin 97.7 3.8E-06 8.3E-11 55.4 -1.0 46 165-224 7-54 (62)
47 KOG1645 RING-finger-containing 97.5 3.9E-05 8.4E-10 69.8 1.2 52 165-225 4-57 (463)
48 KOG0311 Predicted E3 ubiquitin 97.4 2.1E-05 4.6E-10 70.3 -1.4 49 163-225 41-91 (381)
49 KOG0297 TNF receptor-associate 97.4 7E-05 1.5E-09 69.1 1.6 54 162-229 18-72 (391)
50 KOG1941 Acetylcholine receptor 97.3 5E-05 1.1E-09 68.7 -0.1 47 165-221 365-413 (518)
51 KOG4159 Predicted E3 ubiquitin 97.3 0.00013 2.9E-09 67.1 2.5 49 163-225 82-130 (398)
52 KOG4445 Uncharacterized conser 97.2 6.6E-05 1.4E-09 65.8 -0.7 52 164-226 114-188 (368)
53 KOG1428 Inhibitor of type V ad 96.9 0.0005 1.1E-08 70.8 2.4 52 162-224 3483-3544(3738)
54 PF11789 zf-Nse: Zinc-finger o 96.7 0.0012 2.6E-08 44.4 2.4 42 164-218 10-53 (57)
55 KOG4692 Predicted E3 ubiquitin 96.6 0.0013 2.8E-08 59.1 2.5 50 162-225 419-468 (489)
56 PF14570 zf-RING_4: RING/Ubox 96.5 0.0012 2.6E-08 42.8 1.4 46 168-223 1-47 (48)
57 PF14447 Prok-RING_4: Prokaryo 96.3 0.0023 5.1E-08 42.4 1.8 38 189-228 17-54 (55)
58 COG5152 Uncharacterized conser 96.3 0.0014 3E-08 54.6 0.7 44 165-222 196-239 (259)
59 PF14369 zf-RING_3: zinc-finge 96.2 0.0029 6.3E-08 38.2 1.8 29 4-33 7-35 (35)
60 KOG2660 Locus-specific chromos 96.2 0.00071 1.5E-08 60.2 -1.5 48 163-224 13-61 (331)
61 KOG3039 Uncharacterized conser 96.2 0.0037 8E-08 53.7 2.8 56 164-230 220-276 (303)
62 PHA03096 p28-like protein; Pro 96.2 0.0023 4.9E-08 56.6 1.5 49 166-221 179-231 (284)
63 KOG4275 Predicted E3 ubiquitin 96.1 0.0011 2.3E-08 58.2 -1.0 42 165-224 300-342 (350)
64 KOG3268 Predicted E3 ubiquitin 96.1 0.0027 5.9E-08 52.0 1.4 64 163-226 146-230 (234)
65 KOG2879 Predicted E3 ubiquitin 96.1 0.0048 1E-07 53.8 2.9 51 160-224 234-287 (298)
66 PF12906 RINGv: RING-variant d 96.1 0.0037 8.1E-08 40.3 1.7 40 168-219 1-47 (47)
67 PF10367 Vps39_2: Vacuolar sor 96.0 0.0055 1.2E-07 45.5 2.7 35 161-207 74-108 (109)
68 PF05883 Baculo_RING: Baculovi 96.0 0.0036 7.9E-08 49.1 1.6 36 165-211 26-67 (134)
69 KOG1814 Predicted E3 ubiquitin 95.8 0.0036 7.8E-08 57.3 1.0 46 164-220 183-236 (445)
70 KOG1952 Transcription factor N 95.7 0.0052 1.1E-07 60.7 1.8 49 162-221 188-244 (950)
71 PHA02862 5L protein; Provision 95.7 0.0046 9.9E-08 49.0 1.1 47 165-226 2-55 (156)
72 KOG1813 Predicted E3 ubiquitin 95.6 0.0039 8.4E-08 54.8 0.7 45 165-223 241-285 (313)
73 KOG1002 Nucleotide excision re 95.5 0.0051 1.1E-07 58.0 0.8 52 161-226 532-588 (791)
74 KOG0801 Predicted E3 ubiquitin 95.5 0.0043 9.3E-08 50.1 0.2 32 161-203 173-204 (205)
75 KOG3970 Predicted E3 ubiquitin 95.4 0.0089 1.9E-07 50.7 2.1 48 164-223 49-104 (299)
76 KOG0827 Predicted E3 ubiquitin 95.4 0.0013 2.8E-08 59.7 -3.3 52 164-225 195-246 (465)
77 COG5236 Uncharacterized conser 95.2 0.0086 1.9E-07 53.9 1.4 51 160-224 56-108 (493)
78 PHA02825 LAP/PHD finger-like p 95.2 0.014 3.1E-07 47.0 2.4 48 163-225 6-60 (162)
79 KOG4185 Predicted E3 ubiquitin 95.0 0.012 2.5E-07 52.1 1.6 50 166-223 4-54 (296)
80 PF04641 Rtf2: Rtf2 RING-finge 94.9 0.02 4.4E-07 49.9 2.9 55 163-229 111-166 (260)
81 KOG2114 Vacuolar assembly/sort 94.5 0.03 6.4E-07 55.6 3.0 43 165-223 840-882 (933)
82 COG5222 Uncharacterized conser 94.2 0.024 5.2E-07 50.1 1.7 47 166-226 275-324 (427)
83 KOG1940 Zn-finger protein [Gen 94.2 0.022 4.8E-07 50.1 1.4 47 165-221 158-204 (276)
84 KOG1001 Helicase-like transcri 93.9 0.013 2.9E-07 57.6 -0.5 49 166-229 455-505 (674)
85 PF10272 Tmpp129: Putative tra 93.6 0.052 1.1E-06 49.5 2.7 31 197-227 311-354 (358)
86 PF08746 zf-RING-like: RING-li 93.0 0.034 7.3E-07 35.1 0.4 24 196-219 18-43 (43)
87 PF03854 zf-P11: P-11 zinc fin 92.7 0.051 1.1E-06 34.9 0.8 33 194-226 15-48 (50)
88 KOG2034 Vacuolar sorting prote 92.3 0.085 1.8E-06 52.7 2.3 38 161-210 813-850 (911)
89 KOG0826 Predicted E3 ubiquitin 92.1 0.051 1.1E-06 48.6 0.5 52 163-228 298-350 (357)
90 KOG1100 Predicted E3 ubiquitin 91.8 0.097 2.1E-06 44.3 1.8 39 168-224 161-200 (207)
91 COG5175 MOT2 Transcriptional r 91.7 0.086 1.9E-06 47.4 1.4 55 163-227 12-67 (480)
92 KOG2932 E3 ubiquitin ligase in 91.5 0.07 1.5E-06 47.4 0.6 33 191-225 103-135 (389)
93 KOG0309 Conserved WD40 repeat- 90.3 0.11 2.3E-06 51.3 0.7 30 189-218 1040-1069(1081)
94 KOG2817 Predicted E3 ubiquitin 89.3 0.25 5.4E-06 45.3 2.2 48 165-223 334-384 (394)
95 COG5220 TFB3 Cdk activating ki 88.8 0.15 3.4E-06 43.8 0.5 49 164-221 9-61 (314)
96 KOG0298 DEAD box-containing he 88.1 0.14 3E-06 53.1 -0.2 45 164-221 1152-1196(1394)
97 COG5183 SSM4 Protein involved 87.8 0.22 4.8E-06 49.5 0.9 57 162-230 9-72 (1175)
98 KOG3161 Predicted E3 ubiquitin 87.7 0.22 4.9E-06 48.3 0.9 44 165-221 11-54 (861)
99 PF14446 Prok-RING_1: Prokaryo 87.1 0.83 1.8E-05 30.3 3.1 43 165-222 5-50 (54)
100 KOG3899 Uncharacterized conser 86.8 0.26 5.6E-06 43.6 0.7 31 197-227 325-368 (381)
101 KOG3053 Uncharacterized conser 85.5 0.22 4.8E-06 43.2 -0.3 50 163-223 18-81 (293)
102 PF07800 DUF1644: Protein of u 85.0 0.54 1.2E-05 38.0 1.7 13 165-177 2-14 (162)
103 KOG3002 Zn finger protein [Gen 83.8 0.68 1.5E-05 41.3 2.0 45 164-224 47-91 (299)
104 PF05290 Baculo_IE-1: Baculovi 83.4 0.67 1.4E-05 36.4 1.5 51 164-227 79-135 (140)
105 PF02891 zf-MIZ: MIZ/SP-RING z 81.9 0.45 9.8E-06 30.9 0.1 42 167-222 4-50 (50)
106 KOG0802 E3 ubiquitin ligase [P 81.8 0.7 1.5E-05 44.6 1.3 47 163-227 477-523 (543)
107 KOG4362 Transcriptional regula 81.6 0.32 6.9E-06 47.7 -1.0 47 165-225 21-70 (684)
108 KOG1609 Protein involved in mR 81.2 0.61 1.3E-05 41.1 0.7 50 165-224 78-134 (323)
109 KOG1812 Predicted E3 ubiquitin 80.4 0.62 1.3E-05 43.0 0.5 39 164-212 145-183 (384)
110 KOG4718 Non-SMC (structural ma 77.2 1.4 3.1E-05 37.2 1.6 46 165-223 181-226 (235)
111 KOG0269 WD40 repeat-containing 76.5 2 4.3E-05 42.7 2.6 22 197-218 799-820 (839)
112 PF13465 zf-H2C2_2: Zinc-finge 76.4 1.5 3.2E-05 24.3 1.1 15 16-30 11-25 (26)
113 KOG3113 Uncharacterized conser 74.0 2.5 5.4E-05 36.8 2.3 53 165-229 111-163 (293)
114 KOG2066 Vacuolar assembly/sort 72.6 1.5 3.2E-05 43.7 0.7 52 162-221 781-832 (846)
115 KOG3842 Adaptor protein Pellin 67.3 4 8.6E-05 36.7 2.1 56 163-223 288-351 (429)
116 PF10571 UPF0547: Uncharacteri 66.8 2.6 5.7E-05 23.6 0.6 11 167-177 2-12 (26)
117 PF04710 Pellino: Pellino; In 66.4 2 4.4E-05 39.6 0.2 60 163-225 275-340 (416)
118 PF13901 DUF4206: Domain of un 63.4 4.4 9.6E-05 34.0 1.7 45 165-221 152-197 (202)
119 smart00132 LIM Zinc-binding do 61.6 7.6 0.00017 22.5 2.1 20 197-224 19-38 (39)
120 KOG3842 Adaptor protein Pellin 60.9 7.9 0.00017 34.9 2.8 60 164-226 340-416 (429)
121 PF00628 PHD: PHD-finger; Int 60.4 4.3 9.3E-05 25.7 0.8 43 168-221 2-50 (51)
122 KOG1815 Predicted E3 ubiquitin 60.4 4.1 8.9E-05 38.3 1.0 52 163-227 68-129 (444)
123 PF07975 C1_4: TFIIH C1-like d 59.6 8.8 0.00019 25.1 2.2 29 192-220 21-50 (51)
124 PF01363 FYVE: FYVE zinc finge 58.7 5 0.00011 27.2 1.0 38 163-211 7-45 (69)
125 smart00249 PHD PHD zinc finger 58.0 5.3 0.00011 24.1 0.9 17 192-208 15-31 (47)
126 KOG1812 Predicted E3 ubiquitin 57.0 8.4 0.00018 35.6 2.5 48 163-219 304-351 (384)
127 PF11023 DUF2614: Protein of u 56.0 11 0.00023 28.8 2.4 21 207-227 79-99 (114)
128 KOG1829 Uncharacterized conser 55.0 3.7 8E-05 39.9 -0.2 28 191-221 531-558 (580)
129 PF04423 Rad50_zn_hook: Rad50 53.3 3 6.4E-05 27.2 -0.9 13 214-226 21-33 (54)
130 KOG2113 Predicted RNA binding 52.6 13 0.00028 33.5 2.8 43 165-223 343-386 (394)
131 KOG0825 PHD Zn-finger protein 51.2 6 0.00013 39.7 0.5 49 165-223 96-153 (1134)
132 PF13719 zinc_ribbon_5: zinc-r 47.2 13 0.00028 22.3 1.4 33 167-202 4-36 (37)
133 cd00350 rubredoxin_like Rubred 46.9 8 0.00017 22.6 0.4 19 197-221 7-25 (33)
134 smart00064 FYVE Protein presen 46.6 8.7 0.00019 25.9 0.6 38 164-211 9-46 (68)
135 PF09889 DUF2116: Uncharacteri 46.0 11 0.00023 25.5 1.0 18 212-229 2-19 (59)
136 PF04216 FdhE: Protein involve 45.8 4.4 9.6E-05 35.7 -1.2 49 164-221 171-219 (290)
137 PF07191 zinc-ribbons_6: zinc- 45.5 3.2 7E-05 29.0 -1.6 40 166-224 2-41 (70)
138 PF00412 LIM: LIM domain; Int 44.9 17 0.00037 23.3 1.9 24 196-227 17-40 (58)
139 PF04710 Pellino: Pellino; In 43.8 7.7 0.00017 35.9 0.0 61 165-225 328-402 (416)
140 PF06844 DUF1244: Protein of u 43.7 11 0.00023 26.1 0.7 11 201-211 12-22 (68)
141 KOG2068 MOT2 transcription fac 42.3 18 0.00039 32.7 2.1 50 165-224 249-298 (327)
142 KOG0824 Predicted E3 ubiquitin 41.4 8.4 0.00018 34.4 -0.1 47 163-223 103-150 (324)
143 KOG2807 RNA polymerase II tran 41.2 18 0.00039 32.7 1.9 34 189-222 343-376 (378)
144 PF00096 zf-C2H2: Zinc finger, 41.1 11 0.00024 19.5 0.4 12 20-31 1-12 (23)
145 smart00647 IBR In Between Ring 41.1 12 0.00027 24.4 0.7 21 190-210 38-59 (64)
146 TIGR00622 ssl1 transcription f 40.9 26 0.00057 26.7 2.5 55 165-221 55-111 (112)
147 PF14311 DUF4379: Domain of un 40.0 18 0.00039 23.5 1.4 22 197-219 34-55 (55)
148 COG4068 Uncharacterized protei 40.0 15 0.00033 24.7 1.0 18 212-229 7-24 (64)
149 COG5109 Uncharacterized conser 38.9 22 0.00048 32.1 2.1 47 165-222 336-385 (396)
150 PHA00616 hypothetical protein 38.5 9.7 0.00021 24.1 -0.1 14 19-32 1-14 (44)
151 cd00065 FYVE FYVE domain; Zinc 37.1 20 0.00044 23.0 1.2 36 166-211 3-38 (57)
152 KOG3579 Predicted E3 ubiquitin 37.1 19 0.00041 32.0 1.4 36 165-214 268-307 (352)
153 PF13912 zf-C2H2_6: C2H2-type 36.1 16 0.00035 19.7 0.5 14 19-32 1-14 (27)
154 PF06906 DUF1272: Protein of u 35.2 27 0.00058 23.3 1.5 46 166-225 6-53 (57)
155 PF07649 C1_3: C1-like domain; 34.7 23 0.00051 20.0 1.1 29 167-206 2-30 (30)
156 KOG4185 Predicted E3 ubiquitin 33.3 6.5 0.00014 34.5 -2.1 49 165-221 207-264 (296)
157 PF13894 zf-C2H2_4: C2H2-type 32.7 20 0.00044 18.1 0.6 11 20-30 1-11 (24)
158 KOG2071 mRNA cleavage and poly 32.6 20 0.00043 34.9 0.8 44 163-209 511-556 (579)
159 KOG1729 FYVE finger containing 31.9 11 0.00024 33.5 -0.9 38 165-213 214-251 (288)
160 PF13717 zinc_ribbon_4: zinc-r 31.1 23 0.00051 21.1 0.7 33 167-202 4-36 (36)
161 PLN02189 cellulose synthase 30.4 43 0.00093 34.9 2.8 52 165-224 34-87 (1040)
162 PF09723 Zn-ribbon_8: Zinc rib 30.3 17 0.00038 22.4 0.0 27 194-221 8-34 (42)
163 KOG3005 GIY-YIG type nuclease 30.3 13 0.00029 32.6 -0.6 50 165-224 182-243 (276)
164 KOG2041 WD40 repeat protein [G 30.0 32 0.00069 34.6 1.8 29 191-223 1154-1184(1189)
165 smart00734 ZnF_Rad18 Rad18-lik 29.4 16 0.00034 20.3 -0.3 11 215-225 3-13 (26)
166 PF10146 zf-C4H2: Zinc finger- 28.2 33 0.00071 29.5 1.4 24 201-224 196-219 (230)
167 PF02318 FYVE_2: FYVE-type zin 27.5 35 0.00076 25.9 1.3 48 164-221 53-102 (118)
168 PF06750 DiS_P_DiS: Bacterial 27.0 40 0.00086 24.6 1.5 40 164-226 32-71 (92)
169 PRK03564 formate dehydrogenase 26.8 39 0.00084 30.4 1.6 49 164-221 186-234 (309)
170 KOG3039 Uncharacterized conser 25.9 36 0.00078 29.7 1.2 35 162-210 40-74 (303)
171 KOG4218 Nuclear hormone recept 25.7 37 0.0008 31.1 1.3 16 161-176 11-26 (475)
172 COG3369 Zinc finger domain con 25.6 68 0.0015 22.8 2.3 23 5-28 29-51 (78)
173 PF14169 YdjO: Cold-inducible 24.7 40 0.00086 22.7 1.0 30 192-225 16-51 (59)
174 PLN02195 cellulose synthase A 24.7 74 0.0016 33.0 3.4 56 164-227 5-62 (977)
175 PF05353 Atracotoxin: Delta At 24.0 13 0.00028 23.0 -1.3 15 203-217 18-32 (42)
176 PF13240 zinc_ribbon_2: zinc-r 23.8 25 0.00055 18.9 -0.1 7 215-221 15-21 (23)
177 PLN02436 cellulose synthase A 23.2 67 0.0014 33.7 2.7 52 165-224 36-89 (1094)
178 PLN02248 cellulose synthase-li 22.0 60 0.0013 34.2 2.1 39 189-227 142-180 (1135)
179 PF03119 DNA_ligase_ZBD: NAD-d 21.4 34 0.00073 19.3 0.1 10 215-224 1-10 (28)
180 KOG4451 Uncharacterized conser 20.7 59 0.0013 28.1 1.5 22 202-223 252-273 (286)
181 COG3492 Uncharacterized protei 20.3 40 0.00086 24.8 0.3 11 201-211 43-53 (104)
182 PRK11827 hypothetical protein; 20.3 38 0.00083 22.9 0.2 19 208-226 3-21 (60)
183 KOG2169 Zn-finger transcriptio 20.3 1.7E+02 0.0037 29.0 4.8 37 193-229 316-361 (636)
184 PF13832 zf-HC5HC2H_2: PHD-zin 20.3 81 0.0018 23.2 2.1 32 165-209 55-88 (110)
185 PLN02638 cellulose synthase A 20.2 88 0.0019 32.9 2.9 52 165-224 17-70 (1079)
186 PF05605 zf-Di19: Drought indu 20.1 51 0.0011 21.2 0.8 8 166-173 32-39 (54)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.3e-16 Score=142.18 Aligned_cols=78 Identities=31% Similarity=0.715 Sum_probs=64.1
Q ss_pred ccccccHHHHHhccccccchhhhhhhhcccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccC
Q 042810 134 ERKEASRFVVEMLSRKQRRVLDLDFNKLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQ 213 (230)
Q Consensus 134 ~~~~~s~~~i~~l~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~ 213 (230)
+..++.++.+++++...+...+ +.... ..|+||+|+|.. |+.++.|||+|.||..||++||.+.
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~----~~~~~-~~CaIClEdY~~-----------GdklRiLPC~H~FH~~CIDpWL~~~ 266 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGD----DEDAT-DTCAICLEDYEK-----------GDKLRILPCSHKFHVNCIDPWLTQT 266 (348)
T ss_pred hhhhhHHHHHhhCCcEEecccc----ccCCC-ceEEEeeccccc-----------CCeeeEecCCCchhhccchhhHhhc
Confidence 5567888999999998885422 22222 599999999998 9999999999999999999999887
Q ss_pred Cc-ccccccCccccC
Q 042810 214 NS-CPMCRRQIQYED 227 (230)
Q Consensus 214 ~t-CP~CR~~i~~~~ 227 (230)
++ ||+||+++.+..
T Consensus 267 r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 267 RTFCPVCKRDIRTDS 281 (348)
T ss_pred CccCCCCCCcCCCCC
Confidence 55 999999886653
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.61 E-value=2e-16 Score=101.25 Aligned_cols=44 Identities=50% Similarity=1.294 Sum_probs=40.0
Q ss_pred CccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccc
Q 042810 166 DNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCR 220 (230)
Q Consensus 166 ~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR 220 (230)
++|+||++++.. ++.++.++|||.||.+||.+|++++++||+||
T Consensus 1 d~C~IC~~~~~~-----------~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFED-----------GEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHT-----------TSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcC-----------CCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 479999999988 78899999999999999999999999999998
No 3
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.1e-15 Score=127.66 Aligned_cols=152 Identities=18% Similarity=0.345 Sum_probs=110.5
Q ss_pred ccccCCCceeecCCCCCC-ChHHHHHHHHhcCCCcceeeeehhhcccCceeeccCCeeeEEEechhHHHHHHHHHHHHHh
Q 042810 54 TRSVNRFPVIQIPANALT-SPMYLFRELVTLNLDHMLCVFLHQHLAQGAFYLSSGGLTGFHLSADVEVVEIEVVEDEIER 132 (230)
Q Consensus 54 ~~~~~s~~~~~i~~~~~~-~~~~l~~lL~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~v~~v~~~~~~~~~~~ 132 (230)
++.+++++.+.-+.+... .-+|+..+...+++ +..+..+....-+.++++.++|+.-..+.+|+..+..+.+...+..
T Consensus 133 pRlVYkwFl~lyklSy~~g~vGyl~im~~~~g~-n~~F~~~~~~~md~gi~~lfyglYyGvlgRdfa~icsd~mAs~iGf 211 (328)
T KOG1734|consen 133 PRLVYKWFLFLYKLSYLLGVVGYLAIMFAQFGL-NFTFFYLKTTYMDFGISFLFYGLYYGVLGRDFAEICSDYMASTIGF 211 (328)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhce-eeEEeecchhHhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Confidence 444555543333332222 44777777777777 4455566666668888888888888889999999888888777777
Q ss_pred hccccccHHHHHhccccccchhhhhhhhcccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHh--h
Q 042810 133 SERKEASRFVVEMLSRKQRRVLDLDFNKLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRW--L 210 (230)
Q Consensus 133 ~~~~~~s~~~i~~l~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~W--l 210 (230)
+.+.+.+ +.-. ++..|+||-..+..+.++++. -++..+|.|+|+||+.||+.| +
T Consensus 212 Ys~~glP--------tkhl------------~d~vCaVCg~~~~~s~~eegv----ienty~LsCnHvFHEfCIrGWciv 267 (328)
T KOG1734|consen 212 YSPSGLP--------TKHL------------SDSVCAVCGQQIDVSVDEEGV----IENTYKLSCNHVFHEFCIRGWCIV 267 (328)
T ss_pred cCCCCCC--------CCCC------------CcchhHhhcchheeecchhhh----hhhheeeecccchHHHhhhhheee
Confidence 6664443 2222 378999999888775554443 467889999999999999999 4
Q ss_pred ccCCcccccccCccccCCCC
Q 042810 211 EEQNSCPMCRRQIQYEDLVG 230 (230)
Q Consensus 211 ~~~~tCP~CR~~i~~~~l~~ 230 (230)
.++++||.|+.++..+.+++
T Consensus 268 GKkqtCPYCKekVdl~rmfs 287 (328)
T KOG1734|consen 268 GKKQTCPYCKEKVDLKRMFS 287 (328)
T ss_pred cCCCCCchHHHHhhHhhhcc
Confidence 68999999999998887753
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.47 E-value=2.1e-14 Score=101.80 Aligned_cols=59 Identities=41% Similarity=0.843 Sum_probs=42.1
Q ss_pred cccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccc
Q 042810 161 LVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCR 220 (230)
Q Consensus 161 ~~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR 220 (230)
....++.|+||++.+.+....... ......+...+|||.||..||.+|++++++||+||
T Consensus 15 ~~~~~d~C~IC~~~l~~~~~~~~~-~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 15 WDIADDNCAICREPLEDPCPECQA-PQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp ESSCCSBETTTTSBTTSTTCCHHH-CTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred ecCcCCcccccChhhhChhhhhcC-CccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 333466799999999653321111 11245566778999999999999999999999998
No 5
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.3e-14 Score=128.75 Aligned_cols=84 Identities=25% Similarity=0.675 Sum_probs=60.3
Q ss_pred cccccHHHHHhccccccchhhhhhhhcccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCC
Q 042810 135 RKEASRFVVEMLSRKQRRVLDLDFNKLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQN 214 (230)
Q Consensus 135 ~~~~s~~~i~~l~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~ 214 (230)
...+.++..+.++.+..+ +...+|..|.||||++-..+...-+ -..+..+++|||||.||.+|++-|+++++
T Consensus 264 ~~r~~kdl~~~~~t~t~e-------ql~n~D~~C~ICmde~~h~~~~~~~-~~~~~~pKrLpCGHilHl~CLknW~ERqQ 335 (491)
T COG5243 264 FRRATKDLNAMYPTATEE-------QLTNSDRTCTICMDEMFHPDHEPLP-RGLDMTPKRLPCGHILHLHCLKNWLERQQ 335 (491)
T ss_pred HHHHhhHHHhhcchhhhh-------hhcCCCCeEEEecccccCCCCccCc-ccccCCcccccccceeeHHHHHHHHHhcc
Confidence 345566666666665553 3456789999999995442221111 12245688999999999999999999999
Q ss_pred cccccccCcccc
Q 042810 215 SCPMCRRQIQYE 226 (230)
Q Consensus 215 tCP~CR~~i~~~ 226 (230)
|||+||.++-.+
T Consensus 336 TCPICr~p~ifd 347 (491)
T COG5243 336 TCPICRRPVIFD 347 (491)
T ss_pred CCCcccCccccc
Confidence 999999996443
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.38 E-value=2.9e-13 Score=115.88 Aligned_cols=79 Identities=25% Similarity=0.543 Sum_probs=55.7
Q ss_pred ccccHHHHHhccccccchhhhhhhhcccCCCccccCchhhhhhhhhhccccccCcee-EEeCCCCccchhhHHHhhccCC
Q 042810 136 KEASRFVVEMLSRKQRRVLDLDFNKLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQL-ITMPCHHIFHASCISRWLEEQN 214 (230)
Q Consensus 136 ~~~s~~~i~~l~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v-~~LpC~H~FH~~CI~~Wl~~~~ 214 (230)
.+.++..++.+|....+.. .......+.+|+||++.+.+.+ ...... ...+|+|.||..||.+|++++.
T Consensus 148 ~~~~~~~i~~lp~vl~~~e---~~~~~~~~~eC~ICle~~~~~~-------~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~ 217 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYE---KLYNRSKDKECAICMEKVYDKE-------IKNMYFGILSNCNHVFCIECIDIWKKEKN 217 (238)
T ss_pred cchhHHHHHhcchhhhhhh---hhhcCCCCCCCccCCcccccCc-------cccccceecCCCCCcccHHHHHHHHhcCC
Confidence 4557888888888765321 1123345789999999976510 001112 3346999999999999999999
Q ss_pred cccccccCcc
Q 042810 215 SCPMCRRQIQ 224 (230)
Q Consensus 215 tCP~CR~~i~ 224 (230)
+||+||.++.
T Consensus 218 tCPlCR~~~~ 227 (238)
T PHA02929 218 TCPVCRTPFI 227 (238)
T ss_pred CCCCCCCEee
Confidence 9999999774
No 7
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.2e-12 Score=112.02 Aligned_cols=54 Identities=37% Similarity=0.957 Sum_probs=47.6
Q ss_pred cccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhc-cCCcccccccCccc
Q 042810 161 LVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLE-EQNSCPMCRRQIQY 225 (230)
Q Consensus 161 ~~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~-~~~tCP~CR~~i~~ 225 (230)
+...+-+|+|||++|-- +++.+.+||.|.||..|++.|+. -++.||+||.++++
T Consensus 319 ea~~GveCaICms~fiK-----------~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 319 EADKGVECAICMSNFIK-----------NDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred hcCCCceEEEEhhhhcc-----------cceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 33446899999999954 88899999999999999999987 78899999999875
No 8
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.27 E-value=1.9e-12 Score=93.31 Aligned_cols=64 Identities=27% Similarity=0.612 Sum_probs=47.7
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhcc---CCcccccccCccccC
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEE---QNSCPMCRRQIQYED 227 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~---~~tCP~CR~~i~~~~ 227 (230)
..++.|+||+..|....+....++ .+..++...|+|.||..||.+|+.+ +++||+||+++..++
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pg-d~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k~ 85 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPG-DDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFKE 85 (85)
T ss_pred CCCCceeeEecccccCCCCccCCC-CCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeCC
Confidence 458999999999986443222222 2334555569999999999999985 468999999987654
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.20 E-value=6.5e-12 Score=82.42 Aligned_cols=46 Identities=33% Similarity=1.000 Sum_probs=40.0
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCc-cchhhHHHhhccCCcccccccCcc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHI-FHASCISRWLEEQNSCPMCRRQIQ 224 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~-FH~~CI~~Wl~~~~tCP~CR~~i~ 224 (230)
+..|.||++.... +..+||||. ||..|+.+|++++.+||+||++|.
T Consensus 2 ~~~C~iC~~~~~~--------------~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD--------------VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS--------------EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc--------------eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4689999998654 889999999 999999999999999999999885
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.18 E-value=8.7e-12 Score=103.03 Aligned_cols=53 Identities=26% Similarity=0.758 Sum_probs=44.4
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhcc----------------CCcccccccCcccc
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEE----------------QNSCPMCRRQIQYE 226 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~----------------~~tCP~CR~~i~~~ 226 (230)
.++.+|+||++.+.+ ++.++|||.||..||.+|+.. +.+||+||..+...
T Consensus 16 ~~~~~CpICld~~~d--------------PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 16 GGDFDCNICLDQVRD--------------PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCccCCccCCCcCCC--------------cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 357899999998765 677899999999999999842 34799999999887
Q ss_pred CCC
Q 042810 227 DLV 229 (230)
Q Consensus 227 ~l~ 229 (230)
+++
T Consensus 82 ~Lv 84 (193)
T PLN03208 82 TLV 84 (193)
T ss_pred cEE
Confidence 764
No 11
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=5e-11 Score=103.15 Aligned_cols=53 Identities=38% Similarity=0.873 Sum_probs=47.5
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCccccCCC
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQYEDLV 229 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~~~l~ 229 (230)
.....|.+|+|..+. +..+||||+||-.||..|...+..||+||..+...+++
T Consensus 237 ~a~~kC~LCLe~~~~--------------pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 237 EATRKCSLCLENRSN--------------PSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCceEEEecCCCC--------------CCcCcCcchHHHHHHHHHHccccCCCcccccCCCccee
Confidence 346899999998654 88899999999999999999999999999999988875
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.07 E-value=7.3e-11 Score=73.43 Aligned_cols=39 Identities=41% Similarity=1.134 Sum_probs=32.8
Q ss_pred cccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCccccc
Q 042810 168 CAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMC 219 (230)
Q Consensus 168 C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~C 219 (230)
|+||++.+.+ .++.++|||.||..|+.+|++.+.+||+|
T Consensus 1 C~iC~~~~~~-------------~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-------------PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-------------EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC-------------cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998743 34788999999999999999999999998
No 13
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.05 E-value=7e-11 Score=83.40 Aligned_cols=67 Identities=27% Similarity=0.530 Sum_probs=48.6
Q ss_pred cccCCCccccCchhhhhhhhhhccc-cccCc-eeEEeCCCCccchhhHHHhhccCCcccccccCccccC
Q 042810 161 LVKAGDNCAVCLEELIAKEEIKGQT-TEKKT-QLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQYED 227 (230)
Q Consensus 161 ~~~~~~~C~ICle~~~~~~~~~~~~-~~~~~-~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~~~ 227 (230)
.+..-+.|+||...+..-+.+.... ...++ .+..--|+|.||..||.+||.+++.||++|+++...+
T Consensus 16 wdi~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~ 84 (88)
T COG5194 16 WDIPIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLAD 84 (88)
T ss_pred cccccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEec
Confidence 3334678999999887755433321 11233 4444559999999999999999999999999876543
No 14
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.05 E-value=1.4e-10 Score=72.84 Aligned_cols=44 Identities=45% Similarity=1.250 Sum_probs=36.0
Q ss_pred ccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhcc-CCcccccccCc
Q 042810 167 NCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEE-QNSCPMCRRQI 223 (230)
Q Consensus 167 ~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~-~~tCP~CR~~i 223 (230)
.|+||++.+.. .....+|+|.||..|+..|++. +..||+||..+
T Consensus 1 ~C~iC~~~~~~-------------~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE-------------PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC-------------ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 49999998733 2444559999999999999987 77899999864
No 15
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=9.4e-11 Score=111.95 Aligned_cols=56 Identities=39% Similarity=0.909 Sum_probs=46.3
Q ss_pred cccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCccc
Q 042810 161 LVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQY 225 (230)
Q Consensus 161 ~~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~ 225 (230)
....++.|+||+|.+...+ +..+++|||+|+||..|+..|++++++||+||..+..
T Consensus 287 ~~~~~~~C~IC~e~l~~~~---------~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGH---------NITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred hhhcCCeeeeechhhcccc---------ccccceeecccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 3345889999999997711 2348899999999999999999999999999995543
No 16
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.00 E-value=2.2e-10 Score=78.19 Aligned_cols=50 Identities=22% Similarity=0.508 Sum_probs=44.8
Q ss_pred CccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCccccCCC
Q 042810 166 DNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQYEDLV 229 (230)
Q Consensus 166 ~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~~~l~ 229 (230)
-.|+||.+.+.+ ++.+||||+|+..||.+|++.+.+||+|+..+..++++
T Consensus 2 ~~Cpi~~~~~~~--------------Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~ 51 (63)
T smart00504 2 FLCPISLEVMKD--------------PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLI 51 (63)
T ss_pred cCCcCCCCcCCC--------------CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhce
Confidence 369999999866 67889999999999999999889999999999888775
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.98 E-value=2e-10 Score=96.30 Aligned_cols=57 Identities=30% Similarity=0.814 Sum_probs=39.9
Q ss_pred ccCCCccccCchhhhhhhhhhccccccCceeEEe-CCCCccchhhHHHhhccC------CcccccccCcc
Q 042810 162 VKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITM-PCHHIFHASCISRWLEEQ------NSCPMCRRQIQ 224 (230)
Q Consensus 162 ~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~~Wl~~~------~tCP~CR~~i~ 224 (230)
.+.+.+|+||+|..-.... .+...-..| +|+|.||..||..|.+.+ ++||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~------~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRL------ENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccc------cccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3457899999998644100 002223455 599999999999998753 46999999764
No 18
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.1e-10 Score=93.00 Aligned_cols=54 Identities=28% Similarity=0.747 Sum_probs=45.8
Q ss_pred CCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCccccCCC
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQYEDLV 229 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~~~l~ 229 (230)
....|+|||+.+.. ..+.-..|||+||..||+.-++..+.||+||+.|..++++
T Consensus 130 ~~~~CPiCl~~~se------------k~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 130 GTYKCPICLDSVSE------------KVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFH 183 (187)
T ss_pred cccCCCceecchhh------------ccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhhe
Confidence 35789999999855 1234467999999999999999999999999999988775
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.94 E-value=4.5e-10 Score=71.12 Aligned_cols=38 Identities=39% Similarity=1.002 Sum_probs=30.1
Q ss_pred cccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccC----Cccccc
Q 042810 168 CAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQ----NSCPMC 219 (230)
Q Consensus 168 C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~----~tCP~C 219 (230)
|+||++.|.+ ++.|+|||.|+..||.+|.+.. ..||.|
T Consensus 1 CpiC~~~~~~--------------Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD--------------PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS--------------EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC--------------ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999977 8999999999999999998754 369987
No 20
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.2e-10 Score=81.58 Aligned_cols=66 Identities=27% Similarity=0.602 Sum_probs=47.6
Q ss_pred hcccCCCccccCchhhhhhhhhhccccccCceeEEeC-CCCccchhhHHHhhcc---CCcccccccCccccC
Q 042810 160 KLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMP-CHHIFHASCISRWLEE---QNSCPMCRRQIQYED 227 (230)
Q Consensus 160 ~~~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~Wl~~---~~tCP~CR~~i~~~~ 227 (230)
.....+++|.||.-.|...+....-++ ++-+.++- |.|.||..||..|+.. +..||+||+++..+|
T Consensus 15 tW~~~~e~CGiCRm~Fdg~Cp~Ck~Pg--DdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~e 84 (84)
T KOG1493|consen 15 TWDAPDETCGICRMPFDGCCPDCKLPG--DDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFKE 84 (84)
T ss_pred EEcCCCCccceEecccCCcCCCCcCCC--CCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEecC
Confidence 456678899999999977443332222 33333444 9999999999999975 457999999886553
No 21
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=4.9e-10 Score=94.42 Aligned_cols=53 Identities=25% Similarity=0.746 Sum_probs=45.4
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhcc---CCcccccccCccccCCC
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEE---QNSCPMCRRQIQYEDLV 229 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~---~~tCP~CR~~i~~~~l~ 229 (230)
...-+|-||+|.-++ +++..|||.||-.||.+||.. ++.||+||..|..++++
T Consensus 45 ~~~FdCNICLd~akd--------------PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv 100 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKD--------------PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV 100 (230)
T ss_pred CCceeeeeeccccCC--------------CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE
Confidence 446789999998544 888899999999999999975 35799999999998875
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.88 E-value=1.1e-09 Score=69.99 Aligned_cols=44 Identities=27% Similarity=0.814 Sum_probs=37.9
Q ss_pred ccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCccccccc
Q 042810 167 NCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRR 221 (230)
Q Consensus 167 ~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~ 221 (230)
.|+||++.|.+ ......++|||+||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~-----------~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSE-----------ERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccC-----------CCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 48999999944 556888899999999999999866779999985
No 23
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=8.8e-10 Score=81.53 Aligned_cols=67 Identities=28% Similarity=0.577 Sum_probs=50.9
Q ss_pred hcccCCCccccCchhhhhhhhhhccc---cccCceeEEeCCCCccchhhHHHhhccCCcccccccCcccc
Q 042810 160 KLVKAGDNCAVCLEELIAKEEIKGQT---TEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQYE 226 (230)
Q Consensus 160 ~~~~~~~~C~ICle~~~~~~~~~~~~---~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 226 (230)
..+-.-+.|+||...+-+.+-+.... .+....+...-|+|.||..||.+||++++.||+|.+++..+
T Consensus 41 aWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~q 110 (114)
T KOG2930|consen 41 AWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVFQ 110 (114)
T ss_pred eeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeEe
Confidence 44556789999999988866433322 23334555666999999999999999999999999887544
No 24
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.84 E-value=1.5e-09 Score=65.74 Aligned_cols=38 Identities=50% Similarity=1.304 Sum_probs=32.5
Q ss_pred cccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhc-cCCccccc
Q 042810 168 CAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLE-EQNSCPMC 219 (230)
Q Consensus 168 C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~-~~~tCP~C 219 (230)
|+||++.... ...++|+|.||..|++.|++ .+.+||+|
T Consensus 1 C~iC~~~~~~--------------~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD--------------PVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCC--------------cEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899887433 78889999999999999998 66789987
No 25
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.83 E-value=1.4e-09 Score=68.13 Aligned_cols=39 Identities=41% Similarity=1.164 Sum_probs=33.0
Q ss_pred cccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhc--cCCccccc
Q 042810 168 CAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLE--EQNSCPMC 219 (230)
Q Consensus 168 C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~--~~~tCP~C 219 (230)
|+||++.+.. ....++|||.||.+|+.+|++ ....||+|
T Consensus 1 C~iC~~~~~~-------------~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED-------------PVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS-------------EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC-------------CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999998855 235789999999999999998 55689998
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.77 E-value=3.8e-09 Score=96.66 Aligned_cols=53 Identities=30% Similarity=0.671 Sum_probs=45.6
Q ss_pred ccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCccccCC
Q 042810 162 VKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQYEDL 228 (230)
Q Consensus 162 ~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~~~l 228 (230)
.+....|+||++.|.. ++.++|||.||..||..|+..+..||+||..+...++
T Consensus 23 Le~~l~C~IC~d~~~~--------------PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 23 LDTSLRCHICKDFFDV--------------PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKL 75 (397)
T ss_pred cccccCCCcCchhhhC--------------ccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccC
Confidence 3456799999999866 6678999999999999999988899999998876554
No 27
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.59 E-value=2.5e-08 Score=63.35 Aligned_cols=39 Identities=26% Similarity=0.855 Sum_probs=23.2
Q ss_pred cccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccC----Cccc
Q 042810 168 CAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQ----NSCP 217 (230)
Q Consensus 168 C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~----~tCP 217 (230)
|+||.| |... ...+++|+|||+|+.+|+.+|+++. -.||
T Consensus 1 CpIc~e-~~~~----------~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTE----------ENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TT----------SS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCC----------CCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 7441 5567889999999999999999753 2576
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2e-08 Score=86.18 Aligned_cols=53 Identities=32% Similarity=0.764 Sum_probs=44.5
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHH-hhccCC-cccccccCccccCCC
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISR-WLEEQN-SCPMCRRQIQYEDLV 229 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~-Wl~~~~-tCP~CR~~i~~~~l~ 229 (230)
..+..|+||++.... +..+||||+||-.||.. |-.++- .||+||+.+..++++
T Consensus 213 ~~d~kC~lC~e~~~~--------------ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~vi 267 (271)
T COG5574 213 LADYKCFLCLEEPEV--------------PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKVI 267 (271)
T ss_pred ccccceeeeecccCC--------------cccccccchhhHHHHHHHHHhhccccCchhhhhccchhhh
Confidence 347889999998655 88899999999999999 976665 499999998877653
No 29
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.52 E-value=5.5e-08 Score=68.79 Aligned_cols=51 Identities=27% Similarity=0.537 Sum_probs=41.5
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhcc-CCcccccccCccccCCC
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEE-QNSCPMCRRQIQYEDLV 229 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~-~~tCP~CR~~i~~~~l~ 229 (230)
...|+|+.+-|.+ ++.+|+||+|.+.||..|+++ ..+||+|+.++..++++
T Consensus 4 ~f~CpIt~~lM~d--------------PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~ 55 (73)
T PF04564_consen 4 EFLCPITGELMRD--------------PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLI 55 (73)
T ss_dssp GGB-TTTSSB-SS--------------EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSE
T ss_pred ccCCcCcCcHhhC--------------ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccce
Confidence 3579999999877 889999999999999999998 88999999999988774
No 30
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.47 E-value=3.8e-08 Score=87.04 Aligned_cols=51 Identities=29% Similarity=0.696 Sum_probs=46.1
Q ss_pred CCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCccccCC
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQYEDL 228 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~~~l 228 (230)
.-..|.||.|.|.. +..+||+|.||.-||+..|..+..||.|+.++.+.+|
T Consensus 22 ~lLRC~IC~eyf~i--------------p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 22 DLLRCGICFEYFNI--------------PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHHHhHHHHHhcC--------------ceeccccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence 35689999999988 8889999999999999999999999999999887654
No 31
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=6.2e-08 Score=89.85 Aligned_cols=51 Identities=35% Similarity=0.804 Sum_probs=42.6
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhcc-----CCcccccccCccccCCC
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEE-----QNSCPMCRRQIQYEDLV 229 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~-----~~tCP~CR~~i~~~~l~ 229 (230)
+..|+||++.... +..+.|||+||..||-+.+.. ...||+||..|..+||.
T Consensus 186 ~~~CPICL~~~~~--------------p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~ 241 (513)
T KOG2164|consen 186 DMQCPICLEPPSV--------------PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLL 241 (513)
T ss_pred CCcCCcccCCCCc--------------ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccccee
Confidence 7899999998655 666779999999999987754 35899999999988763
No 32
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.34 E-value=2.3e-07 Score=60.59 Aligned_cols=42 Identities=26% Similarity=0.893 Sum_probs=32.4
Q ss_pred ccccCchhhhhhhhhhccccccCceeEEeCCC-----CccchhhHHHhhccC--Ccccccc
Q 042810 167 NCAVCLEELIAKEEIKGQTTEKKTQLITMPCH-----HIFHASCISRWLEEQ--NSCPMCR 220 (230)
Q Consensus 167 ~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~-----H~FH~~CI~~Wl~~~--~tCP~CR 220 (230)
.|.||++ ..+ ++.+...||. |.+|..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~-~~~-----------~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGD-----------EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCC-----------CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 222 4446678985 899999999999654 4899995
No 33
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.33 E-value=2.1e-07 Score=91.38 Aligned_cols=57 Identities=25% Similarity=0.739 Sum_probs=42.9
Q ss_pred hcccCCCccccCchhhhhhhhhhccccccCceeEEeC-CCCccchhhHHHhhcc--CCcccccccCcc
Q 042810 160 KLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMP-CHHIFHASCISRWLEE--QNSCPMCRRQIQ 224 (230)
Q Consensus 160 ~~~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~Wl~~--~~tCP~CR~~i~ 224 (230)
...++-++|+||+..+..-++ .-.-++-| |.|-||..|+..|++. +++||+||.+++
T Consensus 1464 ~~fsG~eECaICYsvL~~vdr--------~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1464 EKFSGHEECAICYSVLDMVDR--------SLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhcCCcchhhHHHHHHHHHhc--------cCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 456678899999998875221 11122334 9999999999999986 468999999876
No 34
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.5e-07 Score=86.75 Aligned_cols=63 Identities=24% Similarity=0.748 Sum_probs=43.2
Q ss_pred cCCCccccCchhhhhhh---hhhccccccCceeEEeCCCCccchhhHHHhhc-cCCcccccccCccc
Q 042810 163 KAGDNCAVCLEELIAKE---EIKGQTTEKKTQLITMPCHHIFHASCISRWLE-EQNSCPMCRRQIQY 225 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~---~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~-~~~tCP~CR~~i~~ 225 (230)
.....|+|||.+...-. ++..........-...||.|+||..|+.+|.. .+-.||+||.+++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 34678999999875511 00000011112344579999999999999998 56699999999864
No 35
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.19 E-value=2.9e-07 Score=64.62 Aligned_cols=53 Identities=25% Similarity=0.718 Sum_probs=24.1
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEe--CCCCccchhhHHHhhcc----C-------CcccccccCccc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITM--PCHHIFHASCISRWLEE----Q-------NSCPMCRRQIQY 225 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~L--pC~H~FH~~CI~~Wl~~----~-------~tCP~CR~~i~~ 225 (230)
+..|+||++.+.+.++ ...+..- .|++.||..|+.+||.. + .+||.|+++|.-
T Consensus 2 ~~~C~IC~~~~~~~~~--------~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGE--------IPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-------------B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCC--------cCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 4579999998753110 1112222 49999999999999863 1 259999998864
No 36
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.14 E-value=1.5e-06 Score=79.63 Aligned_cols=51 Identities=37% Similarity=0.907 Sum_probs=40.2
Q ss_pred ccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCcc
Q 042810 162 VKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQ 224 (230)
Q Consensus 162 ~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~ 224 (230)
..+-.+|+||+|.+.++ -..+..+.|.|.||..|+..|- -.+||+||.-..
T Consensus 172 ~tELPTCpVCLERMD~s----------~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSS----------TTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCcc----------ccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 34578999999999652 2336667799999999999994 568999998554
No 37
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=8.6e-07 Score=76.05 Aligned_cols=47 Identities=34% Similarity=0.818 Sum_probs=39.9
Q ss_pred cccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCccccccc
Q 042810 161 LVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRR 221 (230)
Q Consensus 161 ~~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~ 221 (230)
...+...|+||++.|.. +..+||+|.||..|+..|....-.||.||.
T Consensus 9 ~~~~~~~C~iC~~~~~~--------------p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFRE--------------PVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred hccccccChhhHHHhhc--------------CccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 33457899999999977 488999999999999999875568999993
No 38
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.11 E-value=9.6e-07 Score=76.89 Aligned_cols=47 Identities=30% Similarity=0.567 Sum_probs=42.0
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCccc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQY 225 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~ 225 (230)
-..|-||-+.+.. +...+|||.||.-||+..|..+.-||+||.+..+
T Consensus 25 ~lrC~IC~~~i~i--------------p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 25 MLRCRICDCRISI--------------PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred HHHhhhhhheeec--------------ceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 5689999999877 7778899999999999999999999999987644
No 39
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.2e-06 Score=78.37 Aligned_cols=48 Identities=31% Similarity=0.909 Sum_probs=41.5
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeCCCCc-cchhhHHHhhccCCcccccccCcc
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHI-FHASCISRWLEEQNSCPMCRRQIQ 224 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~-FH~~CI~~Wl~~~~tCP~CR~~i~ 224 (230)
+...+|.||+.+-.+ ..+|||.|. .|.+|.+.---+++.||+||++|.
T Consensus 288 ~~gkeCVIClse~rd--------------t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRD--------------TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcc--------------eEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 447899999998665 899999999 999999887557889999999874
No 40
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.07 E-value=1.4e-06 Score=59.47 Aligned_cols=49 Identities=29% Similarity=0.693 Sum_probs=25.6
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCccccCC
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQYEDL 228 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~~~l 228 (230)
-..|++|.+.+.. .+....|.|+||..||.+-+.. .||+|+.+--.+|+
T Consensus 7 lLrCs~C~~~l~~-------------pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~ 55 (65)
T PF14835_consen 7 LLRCSICFDILKE-------------PVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDI 55 (65)
T ss_dssp TTS-SSS-S--SS--------------B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS-
T ss_pred hcCCcHHHHHhcC-------------CceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHH
Confidence 4579999999855 2344559999999999997664 49999998877775
No 41
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=3.5e-05 Score=69.12 Aligned_cols=54 Identities=11% Similarity=-0.041 Sum_probs=39.6
Q ss_pred eeeccccccccc-CceeEEEeecccccCCCceeecCCCCCC--ChHHHHHHHHhcCC
Q 042810 32 KQRCQKVNRSPS-NGQQFILRDYTRSVNRFPVIQIPANALT--SPMYLFRELVTLNL 85 (230)
Q Consensus 32 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~s~~~~~i~~~~~~--~~~~l~~lL~~~~~ 85 (230)
.-..|.++|+++ ++..+.+++...-.+-....|-|+.+.. +..-+..++++++.
T Consensus 173 ~~~~~~~~~~l~~~~~~t~l~e~v~d~~~~~r~~~~~~g~~~v~~s~~d~LIsr~g~ 229 (355)
T KOG1571|consen 173 RGGFRETERVLPLGTRLTALGELVRDGYCGVRVQPPMQGPLYVTKSAADRLISREGD 229 (355)
T ss_pred eecccceEEeeccccceeeeehheecCCCceEecCCccCcceeeccchhhHHHhhcc
Confidence 445678888888 8889999998777766677777777754 22237777887776
No 42
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.81 E-value=2.3e-06 Score=77.44 Aligned_cols=56 Identities=25% Similarity=0.767 Sum_probs=45.2
Q ss_pred hhhcccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhcc--CCcccccccCccccC
Q 042810 158 FNKLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEE--QNSCPMCRRQIQYED 227 (230)
Q Consensus 158 ~~~~~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~--~~tCP~CR~~i~~~~ 227 (230)
+.+..+.-+.|-||-|. ...++.-||||..|..|+..|... .++||.||.+|..-+
T Consensus 362 YceMgsTFeLCKICaen--------------dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 362 YCEMGSTFELCKICAEN--------------DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHccchHHHHHHhhcc--------------CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 44556667889999997 344888899999999999999753 589999999986544
No 43
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=8.2e-06 Score=73.60 Aligned_cols=54 Identities=30% Similarity=0.850 Sum_probs=38.8
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeC-CCCccchhhHHHhh--cc-----CCcccccccCc
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMP-CHHIFHASCISRWL--EE-----QNSCPMCRRQI 223 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~Wl--~~-----~~tCP~CR~~i 223 (230)
..+.+|+||++..-+.. .....-..+| |.|.||..||+.|- ++ ...||.||...
T Consensus 159 s~~k~CGICme~i~ek~-------~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKA-------ASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccc-------hhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45889999999875521 0011233456 99999999999996 33 46899999854
No 44
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=6.7e-06 Score=79.69 Aligned_cols=51 Identities=25% Similarity=0.610 Sum_probs=43.0
Q ss_pred CCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhc-cCCcccccccCccccCC
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLE-EQNSCPMCRRQIQYEDL 228 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~-~~~tCP~CR~~i~~~~l 228 (230)
+-..|++|-..+.+ .+...|+|+||..||.+-+. +++.||.|.+.+..-|+
T Consensus 642 ~~LkCs~Cn~R~Kd--------------~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKD--------------AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred hceeCCCccCchhh--------------HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 45689999988877 55556999999999999987 56789999999987775
No 45
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.74 E-value=6.4e-06 Score=79.86 Aligned_cols=50 Identities=20% Similarity=0.501 Sum_probs=41.1
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCccc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQY 225 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~ 225 (230)
...|++|+..+.+ +......+|+|.||..||..|-+..++||+||..+..
T Consensus 123 ~~~CP~Ci~s~~D-----------qL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCND-----------QLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHH-----------HhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 4567777777766 5555667899999999999999999999999997643
No 46
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=3.8e-06 Score=55.37 Aligned_cols=46 Identities=28% Similarity=0.725 Sum_probs=35.3
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCc-cchhhHHH-hhccCCcccccccCcc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHI-FHASCISR-WLEEQNSCPMCRRQIQ 224 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~-FH~~CI~~-Wl~~~~tCP~CR~~i~ 224 (230)
+++|.||+|.-.+ .+.--|||. .|.+|-.+ |-..+..||+||++|.
T Consensus 7 ~dECTICye~pvd--------------sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVD--------------SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcch--------------HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 4789999998544 334459999 88898655 4447889999999874
No 47
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=3.9e-05 Score=69.75 Aligned_cols=52 Identities=27% Similarity=0.922 Sum_probs=40.7
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhcc--CCcccccccCccc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEE--QNSCPMCRRQIQY 225 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~--~~tCP~CR~~i~~ 225 (230)
..+|+||++.+... ....+..+.|||.|...||..||.+ +..||.|..+-..
T Consensus 4 g~tcpiclds~~~~---------g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 4 GTTCPICLDSYTTA---------GNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred cccCceeeeeeeec---------CceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 56899999998772 2455666779999999999999963 3479999875443
No 48
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=2.1e-05 Score=70.28 Aligned_cols=49 Identities=33% Similarity=0.686 Sum_probs=39.5
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeC-CCCccchhhHHHhhcc-CCcccccccCccc
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMP-CHHIFHASCISRWLEE-QNSCPMCRRQIQY 225 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~Wl~~-~~tCP~CR~~i~~ 225 (230)
..+..|+||++.+.- .+..+ |.|.||..||..-++. .++||.||+.+..
T Consensus 41 ~~~v~c~icl~llk~--------------tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 41 DIQVICPICLSLLKK--------------TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhhccHHHHHHHHh--------------hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 347789999999866 44445 9999999999888875 5789999997644
No 49
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.38 E-value=7e-05 Score=69.09 Aligned_cols=54 Identities=24% Similarity=0.656 Sum_probs=45.3
Q ss_pred ccCCCccccCchhhhhhhhhhccccccCceeEE-eCCCCccchhhHHHhhccCCcccccccCccccCCC
Q 042810 162 VKAGDNCAVCLEELIAKEEIKGQTTEKKTQLIT-MPCHHIFHASCISRWLEEQNSCPMCRRQIQYEDLV 229 (230)
Q Consensus 162 ~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~-LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~~~l~ 229 (230)
.+.+..|++|...+.+ +.. ..|||.||..|+..|+..+..||.|+..+...+.+
T Consensus 18 ~~~~l~C~~C~~vl~~--------------p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRD--------------PVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred CcccccCccccccccC--------------CCCCCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 3457899999999866 444 57999999999999999999999999988766554
No 50
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.32 E-value=5e-05 Score=68.74 Aligned_cols=47 Identities=40% Similarity=0.904 Sum_probs=39.1
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccC--Cccccccc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQ--NSCPMCRR 221 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~--~tCP~CR~ 221 (230)
+.-|..|-+.+-. +.+..--|||.|+||..|+...|.++ ++||-||+
T Consensus 365 ~L~Cg~CGe~~Gl----------k~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGL----------KNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcC----------CcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 6679999887744 36678889999999999999999754 68999994
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00013 Score=67.07 Aligned_cols=49 Identities=31% Similarity=0.817 Sum_probs=42.5
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCccc
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQY 225 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~ 225 (230)
..+-.|.||+..+.. ++.+||||.||..||.+-+.+...||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~--------------pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP--------------PVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCC--------------CccccccccccHHHHHHHhccCCCCccccccccc
Confidence 457799999888755 7788999999999999988888899999998753
No 52
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.19 E-value=6.6e-05 Score=65.83 Aligned_cols=52 Identities=31% Similarity=0.862 Sum_probs=42.7
Q ss_pred CCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhcc-----------------------CCcccccc
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEE-----------------------QNSCPMCR 220 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~-----------------------~~tCP~CR 220 (230)
....|.||+--|.+ ++...+.+|-|.||..|+.+.|.. +..||+||
T Consensus 114 p~gqCvICLygfa~-----------~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcr 182 (368)
T KOG4445|consen 114 PNGQCVICLYGFAS-----------SPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCR 182 (368)
T ss_pred CCCceEEEEEeecC-----------CCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhh
Confidence 46689999999988 777899999999999999887621 23599999
Q ss_pred cCcccc
Q 042810 221 RQIQYE 226 (230)
Q Consensus 221 ~~i~~~ 226 (230)
..|..+
T Consensus 183 e~i~~e 188 (368)
T KOG4445|consen 183 ERIKIE 188 (368)
T ss_pred hhcccc
Confidence 988654
No 53
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.90 E-value=0.0005 Score=70.78 Aligned_cols=52 Identities=38% Similarity=0.896 Sum_probs=41.2
Q ss_pred ccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccC----------CcccccccCcc
Q 042810 162 VKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQ----------NSCPMCRRQIQ 224 (230)
Q Consensus 162 ~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~----------~tCP~CR~~i~ 224 (230)
.+.|+.|-||+.+-.. ....++|.|+|+||..|.+.-|+++ -+||+|+.+|.
T Consensus 3483 QD~DDmCmICFTE~L~-----------AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALS-----------AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cccCceEEEEehhhhC-----------CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 3458899999887655 6668899999999999997755432 26999998874
No 54
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.72 E-value=0.0012 Score=44.39 Aligned_cols=42 Identities=19% Similarity=0.565 Sum_probs=27.5
Q ss_pred CCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhcc--CCcccc
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEE--QNSCPM 218 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~--~~tCP~ 218 (230)
....|+|.+..|.+ .++...|+|+|-+..|.+|+++ ...||+
T Consensus 10 ~~~~CPiT~~~~~~-------------PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED-------------PVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS-------------EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC-------------CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 46789999999855 3555579999999999999943 457998
No 55
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0013 Score=59.14 Aligned_cols=50 Identities=22% Similarity=0.531 Sum_probs=42.7
Q ss_pred ccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCccc
Q 042810 162 VKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQY 225 (230)
Q Consensus 162 ~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~ 225 (230)
+.+++.|+||.-.-.. .+..||+|.-|.+||.+-+...+.|=.|+..+..
T Consensus 419 ~sEd~lCpICyA~pi~--------------Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPIN--------------AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CcccccCcceecccch--------------hhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 3568999999876333 6678999999999999999999999999998764
No 56
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.55 E-value=0.0012 Score=42.76 Aligned_cols=46 Identities=30% Similarity=0.614 Sum_probs=22.2
Q ss_pred cccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhc-cCCcccccccCc
Q 042810 168 CAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLE-EQNSCPMCRRQI 223 (230)
Q Consensus 168 C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~-~~~tCP~CR~~i 223 (230)
|++|.+++.. ++....--+|++.++..|...-++ ....||-||++-
T Consensus 1 cp~C~e~~d~----------~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDE----------TDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--C----------CCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCccccccc----------CCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7899998833 122232234899999999988876 478999999863
No 57
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.31 E-value=0.0023 Score=42.41 Aligned_cols=38 Identities=26% Similarity=0.717 Sum_probs=31.0
Q ss_pred CceeEEeCCCCccchhhHHHhhccCCcccccccCccccCC
Q 042810 189 KTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQYEDL 228 (230)
Q Consensus 189 ~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~~~l 228 (230)
+..-.++||+|+.+..|..-| +-+-||+|-+++...+.
T Consensus 17 ~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 17 GTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDDP 54 (55)
T ss_pred ccccccccccceeeccccChh--hccCCCCCCCcccCCCC
Confidence 444677899999999997765 67789999999987764
No 58
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.28 E-value=0.0014 Score=54.56 Aligned_cols=44 Identities=20% Similarity=0.571 Sum_probs=38.7
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccC
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQ 222 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~ 222 (230)
.-.|.||.++|++ ++...|||.||..|.-.-++...+|-+|-+.
T Consensus 196 PF~C~iCKkdy~s--------------pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYES--------------PVVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred ceeehhchhhccc--------------hhhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 4489999999987 7788899999999998888888899999664
No 59
>PF14369 zf-RING_3: zinc-finger
Probab=96.24 E-value=0.0029 Score=38.24 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=21.0
Q ss_pred eEEEEEeeeeccCCCCccccccccceeeee
Q 042810 4 RVNLHLEGTGSCSNNPLMCPVGNIGIVLKQ 33 (230)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (230)
.||-.|+.......++ .||.||.|||+++
T Consensus 7 ~C~~~V~~~~~~~~~~-~CP~C~~gFvEei 35 (35)
T PF14369_consen 7 QCNRFVRIAPSPDSDV-ACPRCHGGFVEEI 35 (35)
T ss_pred cCCCEeEeCcCCCCCc-CCcCCCCcEeEeC
Confidence 3556666665555555 4999999999985
No 60
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.21 E-value=0.00071 Score=60.18 Aligned_cols=48 Identities=38% Similarity=0.755 Sum_probs=39.5
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeC-CCCccchhhHHHhhccCCcccccccCcc
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMP-CHHIFHASCISRWLEEQNSCPMCRRQIQ 224 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~Wl~~~~tCP~CR~~i~ 224 (230)
..--+|.+|...|-+ .-.+. |-|.||..||-..|...++||.|...|-
T Consensus 13 n~~itC~LC~GYliD--------------ATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih 61 (331)
T KOG2660|consen 13 NPHITCRLCGGYLID--------------ATTITECLHTFCKSCIVKYLEESKYCPTCDIVIH 61 (331)
T ss_pred ccceehhhccceeec--------------chhHHHHHHHHHHHHHHHHHHHhccCCccceecc
Confidence 345689999988866 33444 9999999999999999999999987663
No 61
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.0037 Score=53.68 Aligned_cols=56 Identities=18% Similarity=0.446 Sum_probs=47.9
Q ss_pred CCCccccCchhhhhhhhhhccccccCceeEEe-CCCCccchhhHHHhhccCCcccccccCccccCCCC
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITM-PCHHIFHASCISRWLEEQNSCPMCRRQIQYEDLVG 230 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~~~l~~ 230 (230)
....|+||.+.+.. ......| ||||+|+.+|+...++.-..||+|-.++..+|+|+
T Consensus 220 ~ryiCpvtrd~LtN-----------t~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTN-----------TTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcC-----------ccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEe
Confidence 45689999999876 4445555 69999999999999888889999999999999874
No 62
>PHA03096 p28-like protein; Provisional
Probab=96.17 E-value=0.0023 Score=56.60 Aligned_cols=49 Identities=33% Similarity=0.589 Sum_probs=34.0
Q ss_pred CccccCchhhhhhhhhhccccccCceeEEeC-CCCccchhhHHHhhcc---CCccccccc
Q 042810 166 DNCAVCLEELIAKEEIKGQTTEKKTQLITMP-CHHIFHASCISRWLEE---QNSCPMCRR 221 (230)
Q Consensus 166 ~~C~ICle~~~~~~~~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~Wl~~---~~tCP~CR~ 221 (230)
..|.||++....... ....-..|+ |.|.||..||+.|-.. +.+||.||.
T Consensus 179 k~c~ic~e~~~~k~~-------~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYI-------IKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhcc-------ccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 689999999876221 133345577 9999999999999643 234555543
No 63
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.0011 Score=58.20 Aligned_cols=42 Identities=31% Similarity=0.770 Sum_probs=34.3
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCc-cchhhHHHhhccCCcccccccCcc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHI-FHASCISRWLEEQNSCPMCRRQIQ 224 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~-FH~~CI~~Wl~~~~tCP~CR~~i~ 224 (230)
+..|+|||+.-.+ ...|+|||. -|.+|-... +.||+||+.|.
T Consensus 300 ~~LC~ICmDaP~D--------------CvfLeCGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRD--------------CVFLECGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcc--------------eEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence 6789999998555 889999998 788887653 48999998763
No 64
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.0027 Score=51.99 Aligned_cols=64 Identities=25% Similarity=0.634 Sum_probs=41.1
Q ss_pred cCCCccccCchhhhhhhhhhccc----------cccCceeEEeCCCCccchhhHHHhhcc----CC-------ccccccc
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQT----------TEKKTQLITMPCHHIFHASCISRWLEE----QN-------SCPMCRR 221 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~----------~~~~~~v~~LpC~H~FH~~CI~~Wl~~----~~-------tCP~CR~ 221 (230)
++..+|.+|...|.+.++..+.- ..+.+..--..||.-||.-|+..||+. ++ .||.|..
T Consensus 146 kd~lE~df~a~a~Lekdd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~ 225 (234)
T KOG3268|consen 146 KDQLECDFCAAAFLEKDDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSD 225 (234)
T ss_pred cceeeeCccHHHhcCcchhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCC
Confidence 44566777776666654433321 111223334569999999999999862 22 5999999
Q ss_pred Ccccc
Q 042810 222 QIQYE 226 (230)
Q Consensus 222 ~i~~~ 226 (230)
++..+
T Consensus 226 PialK 230 (234)
T KOG3268|consen 226 PIALK 230 (234)
T ss_pred cceee
Confidence 88654
No 65
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.0048 Score=53.75 Aligned_cols=51 Identities=24% Similarity=0.506 Sum_probs=38.5
Q ss_pred hcccCCCccccCchhhhhhhhhhccccccCceeEEe-CCCCccchhhHHHhhcc--CCcccccccCcc
Q 042810 160 KLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITM-PCHHIFHASCISRWLEE--QNSCPMCRRQIQ 224 (230)
Q Consensus 160 ~~~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~~Wl~~--~~tCP~CR~~i~ 224 (230)
...+.+.+|++|-+.-.. +..+ +|+|+||..||..=+.. .-+||.|..++.
T Consensus 234 s~~t~~~~C~~Cg~~Pti--------------P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTI--------------PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccccCCceeeccCCCCCC--------------CeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 344568899999986322 4444 59999999999886543 468999988775
No 66
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.06 E-value=0.0037 Score=40.27 Aligned_cols=40 Identities=35% Similarity=0.977 Sum_probs=25.6
Q ss_pred cccCchhhhhhhhhhccccccCceeEEeCCC--C---ccchhhHHHhhcc--CCccccc
Q 042810 168 CAVCLEELIAKEEIKGQTTEKKTQLITMPCH--H---IFHASCISRWLEE--QNSCPMC 219 (230)
Q Consensus 168 C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~--H---~FH~~CI~~Wl~~--~~tCP~C 219 (230)
|-||++.-.+ .. ....||+ = ..|.+|+.+|+.. +.+|++|
T Consensus 1 CrIC~~~~~~-----------~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEE-----------DE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SS-----------SS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCC-----------CC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6688887543 22 4556854 3 6899999999974 4679987
No 67
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.99 E-value=0.0055 Score=45.54 Aligned_cols=35 Identities=31% Similarity=0.804 Sum_probs=27.9
Q ss_pred cccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHH
Q 042810 161 LVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCIS 207 (230)
Q Consensus 161 ~~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~ 207 (230)
..+++..|++|...+.. ......||||+||..|++
T Consensus 74 ~i~~~~~C~vC~k~l~~------------~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGN------------SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCC------------ceEEEeCCCeEEeccccc
Confidence 34567889999998733 447778999999999985
No 68
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.96 E-value=0.0036 Score=49.08 Aligned_cols=36 Identities=19% Similarity=0.585 Sum_probs=30.0
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCC------CccchhhHHHhhc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCH------HIFHASCISRWLE 211 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~------H~FH~~CI~~Wl~ 211 (230)
.-+|.||++.+.. ...++.++|| |+||.+|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~-----------~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDN-----------NDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred Ceeehhhhhhhhc-----------CCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 5689999999866 4568888887 8999999999943
No 69
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.0036 Score=57.29 Aligned_cols=46 Identities=26% Similarity=0.683 Sum_probs=36.6
Q ss_pred CCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhcc--------CCcccccc
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEE--------QNSCPMCR 220 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~--------~~tCP~CR 220 (230)
.--.|.||+++..- ....+.+||+|+||..|.+..+.. .-.||-+.
T Consensus 183 slf~C~ICf~e~~G-----------~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 183 SLFDCCICFEEQMG-----------QHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred hcccceeeehhhcC-----------cceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 35689999998754 578999999999999999999853 23587654
No 70
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.70 E-value=0.0052 Score=60.71 Aligned_cols=49 Identities=27% Similarity=0.792 Sum_probs=36.1
Q ss_pred ccCCCccccCchhhhhhhhhhccccccCceeEEe-CCCCccchhhHHHhhccC-------Cccccccc
Q 042810 162 VKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITM-PCHHIFHASCISRWLEEQ-------NSCPMCRR 221 (230)
Q Consensus 162 ~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~~Wl~~~-------~tCP~CR~ 221 (230)
.....+|.||.+.+.. ...+..- .|-|+||..||..|-++. -.||-|..
T Consensus 188 ~~~~yeCmIC~e~I~~-----------t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 188 SNRKYECMICTERIKR-----------TAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred hcCceEEEEeeeeccc-----------cCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 3457799999999865 3333333 389999999999997532 15999983
No 71
>PHA02862 5L protein; Provisional
Probab=95.67 E-value=0.0046 Score=49.01 Aligned_cols=47 Identities=19% Similarity=0.650 Sum_probs=34.2
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCC-----CccchhhHHHhhcc--CCcccccccCcccc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCH-----HIFHASCISRWLEE--QNSCPMCRRQIQYE 226 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~-----H~FH~~CI~~Wl~~--~~tCP~CR~~i~~~ 226 (230)
++.|-||.++-.+ . .-||. ..-|+.|+.+|+.. +.+||+|+.+..-+
T Consensus 2 ~diCWIC~~~~~e-------------~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCDE-------------R--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCCC-------------C--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 4679999997322 1 24654 56899999999974 45899999876543
No 72
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.0039 Score=54.81 Aligned_cols=45 Identities=20% Similarity=0.514 Sum_probs=39.5
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQI 223 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i 223 (230)
...|-||...|.. +++..|+|.||..|...=+++...|++|-+..
T Consensus 241 Pf~c~icr~~f~~--------------pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYR--------------PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred Ccccccccccccc--------------chhhcCCceeehhhhccccccCCcceeccccc
Confidence 4569999999977 78889999999999988888889999997754
No 73
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.48 E-value=0.0051 Score=58.05 Aligned_cols=52 Identities=27% Similarity=0.671 Sum_probs=40.4
Q ss_pred cccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhcc-----CCcccccccCcccc
Q 042810 161 LVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEE-----QNSCPMCRRQIQYE 226 (230)
Q Consensus 161 ~~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~-----~~tCP~CR~~i~~~ 226 (230)
+..+...|.+|-+.-++ .+...|.|.||+.||.+++.. .-+||.|-..+.-+
T Consensus 532 enk~~~~C~lc~d~aed--------------~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAED--------------YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cccCceeecccCChhhh--------------hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 44557799999997555 677789999999999888642 35899998766543
No 74
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.0043 Score=50.10 Aligned_cols=32 Identities=34% Similarity=0.799 Sum_probs=28.1
Q ss_pred cccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccch
Q 042810 161 LVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHA 203 (230)
Q Consensus 161 ~~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~ 203 (230)
..++..+|.||+|+++. ++.+.+|||--+||+
T Consensus 173 L~ddkGECvICLEdL~~-----------GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 173 LKDDKGECVICLEDLEA-----------GDTIARLPCLCIYHK 204 (205)
T ss_pred hcccCCcEEEEhhhccC-----------CCceeccceEEEeec
Confidence 34557799999999998 999999999999996
No 75
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.0089 Score=50.75 Aligned_cols=48 Identities=27% Similarity=0.697 Sum_probs=38.6
Q ss_pred CCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhcc--------CCcccccccCc
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEE--------QNSCPMCRRQI 223 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~--------~~tCP~CR~~i 223 (230)
-...|..|-..+.. ++.+ +|-|-|+||-+|+++|-.. .-.||-|..+|
T Consensus 49 Y~pNC~LC~t~La~-----------gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 49 YNPNCRLCNTPLAS-----------GDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCCceeCCcccc-----------Ccce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 36789999998876 5555 4679999999999999653 23699999877
No 76
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.0013 Score=59.75 Aligned_cols=52 Identities=27% Similarity=0.668 Sum_probs=43.9
Q ss_pred CCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCccc
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQY 225 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~ 225 (230)
....|+||.+.+... -+++..+-|||.+|.+|+..||.++..||.||++++.
T Consensus 195 lv~sl~I~~~slK~~----------y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 195 LVGSLSICFESLKQN----------YDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HHhhhHhhHHHHHHH----------HHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 367899999998771 1456667899999999999999999999999998864
No 77
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.23 E-value=0.0086 Score=53.85 Aligned_cols=51 Identities=27% Similarity=0.623 Sum_probs=39.4
Q ss_pred hcccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHh--hccCCcccccccCcc
Q 042810 160 KLVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRW--LEEQNSCPMCRRQIQ 224 (230)
Q Consensus 160 ~~~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~W--l~~~~tCP~CR~~i~ 224 (230)
+.+++...|-||.+.+. ...++||+|..|-.|-.+- |=.+..||+||.++.
T Consensus 56 dtDEen~~C~ICA~~~T--------------Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 56 DTDEENMNCQICAGSTT--------------YSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccccccceeEEecCCce--------------EEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 34456778999998743 3788999999999998654 345778999998763
No 78
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.17 E-value=0.014 Score=46.97 Aligned_cols=48 Identities=25% Similarity=0.675 Sum_probs=34.0
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeCC--CC---ccchhhHHHhhccC--CcccccccCccc
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPC--HH---IFHASCISRWLEEQ--NSCPMCRRQIQY 225 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC--~H---~FH~~CI~~Wl~~~--~tCP~CR~~i~~ 225 (230)
..+..|-||.++-.+ . .-|| .. .-|..|+.+|+..+ .+|++|+.+..-
T Consensus 6 ~~~~~CRIC~~~~~~-------------~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYDV-------------V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCCC-------------c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 347789999886311 1 2364 44 46999999999754 579999987643
No 79
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.012 Score=52.07 Aligned_cols=50 Identities=24% Similarity=0.638 Sum_probs=38.9
Q ss_pred CccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhcc-CCcccccccCc
Q 042810 166 DNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEE-QNSCPMCRRQI 223 (230)
Q Consensus 166 ~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~-~~tCP~CR~~i 223 (230)
..|-||-++|+..+ +...++.|.|||.|+..|+..-+.. ...||.||...
T Consensus 4 ~~c~~c~~~~s~~~--------~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSED--------GDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccC--------cccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57999999998732 1345777779999999999776654 35799999974
No 80
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.92 E-value=0.02 Score=49.93 Aligned_cols=55 Identities=22% Similarity=0.546 Sum_probs=43.3
Q ss_pred cCCCccccCchhhhhhhhhhccccccCce-eEEeCCCCccchhhHHHhhccCCcccccccCccccCCC
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQ-LITMPCHHIFHASCISRWLEEQNSCPMCRRQIQYEDLV 229 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~-v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~~~l~ 229 (230)
...-.|||...+|.. ... +...||||+|-..++.+- .....||+|-.++..+|+|
T Consensus 111 ~~~~~CPvt~~~~~~-----------~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 111 EGRFICPVTGKEFNG-----------KHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CceeECCCCCcccCC-----------ceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCEE
Confidence 456789999998844 333 444589999999999996 3356899999999988876
No 81
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=0.03 Score=55.60 Aligned_cols=43 Identities=23% Similarity=0.770 Sum_probs=33.3
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQI 223 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i 223 (230)
...|..|--.++. ..+---|||.||.+|+. +....||-|+.+.
T Consensus 840 ~skCs~C~~~Ldl-------------P~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDL-------------PFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCcccc-------------ceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 4689999888744 24445699999999998 4567899998743
No 82
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.22 E-value=0.024 Score=50.08 Aligned_cols=47 Identities=30% Similarity=0.721 Sum_probs=35.9
Q ss_pred CccccCchhhhhhhhhhccccccCceeEEeC-CCCccchhhHHHhh-ccCCccccc-ccCcccc
Q 042810 166 DNCAVCLEELIAKEEIKGQTTEKKTQLITMP-CHHIFHASCISRWL-EEQNSCPMC-RRQIQYE 226 (230)
Q Consensus 166 ~~C~ICle~~~~~~~~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~Wl-~~~~tCP~C-R~~i~~~ 226 (230)
..|+.|..-+.. +.+.| |+|.||..||..-| .....||.| |++|-.+
T Consensus 275 LkCplc~~Llrn--------------p~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld 324 (427)
T COG5222 275 LKCPLCHCLLRN--------------PMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLD 324 (427)
T ss_pred ccCcchhhhhhC--------------cccCccccchHHHHHHhhhhhhccccCCCcccccchhh
Confidence 689999887755 55667 99999999998765 456789999 4454443
No 83
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=94.22 E-value=0.022 Score=50.06 Aligned_cols=47 Identities=28% Similarity=0.679 Sum_probs=38.9
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCccccccc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRR 221 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~ 221 (230)
...|+||.+.+-.. ...+..++|||..|..|........-+||+|.+
T Consensus 158 ~~ncPic~e~l~~s----------~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLS----------FEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccc----------cccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34499999988662 556788999999999999988776789999987
No 84
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.93 E-value=0.013 Score=57.56 Aligned_cols=49 Identities=24% Similarity=0.749 Sum_probs=39.7
Q ss_pred CccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccC--CcccccccCccccCCC
Q 042810 166 DNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQ--NSCPMCRRQIQYEDLV 229 (230)
Q Consensus 166 ~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~--~tCP~CR~~i~~~~l~ 229 (230)
..|.||++ ... ....+|+|.||..|+..-+... ..||.||..+..++++
T Consensus 455 ~~c~ic~~-~~~--------------~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~ 505 (674)
T KOG1001|consen 455 HWCHICCD-LDS--------------FFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLL 505 (674)
T ss_pred cccccccc-ccc--------------ceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHh
Confidence 78999999 322 6778899999999998877543 3699999998887765
No 85
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.61 E-value=0.052 Score=49.52 Aligned_cols=31 Identities=26% Similarity=0.901 Sum_probs=23.2
Q ss_pred CCCccchhhHHHhhccC-------------CcccccccCccccC
Q 042810 197 CHHIFHASCISRWLEEQ-------------NSCPMCRRQIQYED 227 (230)
Q Consensus 197 C~H~FH~~CI~~Wl~~~-------------~tCP~CR~~i~~~~ 227 (230)
|.-..|.+|+-+|+..+ -+||+||+++.--|
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 44566889999998643 26999999886544
No 86
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.03 E-value=0.034 Score=35.11 Aligned_cols=24 Identities=25% Similarity=0.956 Sum_probs=16.0
Q ss_pred CCCCccchhhHHHhhccCC--ccccc
Q 042810 196 PCHHIFHASCISRWLEEQN--SCPMC 219 (230)
Q Consensus 196 pC~H~FH~~CI~~Wl~~~~--tCP~C 219 (230)
.|+=.+|..|+..+++.+. .||.|
T Consensus 18 ~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 18 DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 3888899999999998765 79987
No 87
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=92.65 E-value=0.051 Score=34.94 Aligned_cols=33 Identities=21% Similarity=0.742 Sum_probs=23.4
Q ss_pred EeCCC-CccchhhHHHhhccCCcccccccCcccc
Q 042810 194 TMPCH-HIFHASCISRWLEEQNSCPMCRRQIQYE 226 (230)
Q Consensus 194 ~LpC~-H~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 226 (230)
.+.|+ |..|..|+...+.+...||+|..+++++
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 34575 9999999999999999999999998764
No 88
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.32 E-value=0.085 Score=52.72 Aligned_cols=38 Identities=29% Similarity=0.775 Sum_probs=30.1
Q ss_pred cccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhh
Q 042810 161 LVKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWL 210 (230)
Q Consensus 161 ~~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl 210 (230)
..+.++.|.+|.-.+.. ..-.+-||||.||.+|+-+-.
T Consensus 813 v~ep~d~C~~C~~~ll~------------~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLI------------KPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred EecCccchHHhcchhhc------------CcceeeeccchHHHHHHHHHH
Confidence 45678999999988865 345667999999999997653
No 89
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=0.051 Score=48.57 Aligned_cols=52 Identities=19% Similarity=0.441 Sum_probs=40.3
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeC-CCCccchhhHHHhhccCCcccccccCccccCC
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMP-CHHIFHASCISRWLEEQNSCPMCRRQIQYEDL 228 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~Wl~~~~tCP~CR~~i~~~~l 228 (230)
.+.+.|+||+..... ...+. -|-+||-.||.+.+.+.++||+=..+..-+++
T Consensus 298 ~~~~~CpvClk~r~N--------------ptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l 350 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQN--------------PTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHL 350 (357)
T ss_pred CccccChhHHhccCC--------------CceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHH
Confidence 457899999987543 44444 69999999999999999999987666554443
No 90
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=0.097 Score=44.26 Aligned_cols=39 Identities=28% Similarity=0.820 Sum_probs=29.7
Q ss_pred cccCchhhhhhhhhhccccccCceeEEeCCCCc-cchhhHHHhhccCCcccccccCcc
Q 042810 168 CAVCLEELIAKEEIKGQTTEKKTQLITMPCHHI-FHASCISRWLEEQNSCPMCRRQIQ 224 (230)
Q Consensus 168 C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~-FH~~CI~~Wl~~~~tCP~CR~~i~ 224 (230)
|-.|.+. ...+..+||.|. +|..|=.. -++||+|+....
T Consensus 161 Cr~C~~~--------------~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER--------------EATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC--------------CceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 7777775 444888999988 88899754 456999998653
No 91
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.68 E-value=0.086 Score=47.44 Aligned_cols=55 Identities=24% Similarity=0.594 Sum_probs=38.1
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhc-cCCcccccccCccccC
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLE-EQNSCPMCRRQIQYED 227 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~-~~~tCP~CR~~i~~~~ 227 (230)
++++-|+.|+|.+... +..-.--|||-..|+.|....-+ ....||-||+....+.
T Consensus 12 deed~cplcie~mdit----------dknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 12 DEEDYCPLCIEPMDIT----------DKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cccccCcccccccccc----------cCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 3455699999998662 33344457999999988655422 3468999999766554
No 92
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.47 E-value=0.07 Score=47.43 Aligned_cols=33 Identities=27% Similarity=0.791 Sum_probs=24.9
Q ss_pred eeEEeCCCCccchhhHHHhhccCCcccccccCccc
Q 042810 191 QLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQY 225 (230)
Q Consensus 191 ~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~ 225 (230)
.-+.+||+|+||.+|... ..-+.||.|-.+|..
T Consensus 103 YGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 103 YGRMIPCKHVFCLECARS--DSDKICPLCDDRVQR 135 (389)
T ss_pred eecccccchhhhhhhhhc--CccccCcCcccHHHH
Confidence 356689999999999754 334589999776643
No 93
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.25 E-value=0.11 Score=51.28 Aligned_cols=30 Identities=27% Similarity=0.721 Sum_probs=25.7
Q ss_pred CceeEEeCCCCccchhhHHHhhccCCcccc
Q 042810 189 KTQLITMPCHHIFHASCISRWLEEQNSCPM 218 (230)
Q Consensus 189 ~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~ 218 (230)
+.......|+|+.|..|...|++....||.
T Consensus 1040 gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1040 GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 344566779999999999999999999984
No 94
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.27 E-value=0.25 Score=45.30 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=37.4
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccC---CcccccccCc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQ---NSCPMCRRQI 223 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~---~tCP~CR~~i 223 (230)
--.|||=.+.-.+ ...+..|.|||+...+-+++.-+.. -.||.|=.+.
T Consensus 334 vF~CPVlKeqtsd-----------eNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 334 VFICPVLKEQTSD-----------ENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eeecccchhhccC-----------CCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 4578987776555 6779999999999999999976543 3699995543
No 95
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=88.81 E-value=0.15 Score=43.78 Aligned_cols=49 Identities=24% Similarity=0.676 Sum_probs=34.5
Q ss_pred CCCccccCchhhhhhhhhhccccccCceeEEeC-CCCccchhhHHHhhccC-Cccc--cccc
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITMP-CHHIFHASCISRWLEEQ-NSCP--MCRR 221 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~Wl~~~-~tCP--~CR~ 221 (230)
.+..||||..+--. .+.-.+-.-| |-|..|..|+++-+.+. ..|| -|.+
T Consensus 9 ~d~~CPvCksDrYL---------nPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYL---------NPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCcccccccc---------CCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 36689999765433 1123333447 99999999999998764 5899 7754
No 96
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.13 E-value=0.14 Score=53.14 Aligned_cols=45 Identities=27% Similarity=0.592 Sum_probs=37.2
Q ss_pred CCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCccccccc
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRR 221 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~ 221 (230)
.--.|.||++.+.. . -....|||.+|..|...|+..+..||+|+.
T Consensus 1152 ~~~~c~ic~dil~~-----------~--~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRN-----------Q--GGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHh-----------c--CCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 34589999999865 1 223459999999999999999999999974
No 97
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=87.75 E-value=0.22 Score=49.50 Aligned_cols=57 Identities=23% Similarity=0.690 Sum_probs=41.2
Q ss_pred ccCCCccccCchhhhhhhhhhccccccCceeEEeCCC-----CccchhhHHHhhcc--CCcccccccCccccCCCC
Q 042810 162 VKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCH-----HIFHASCISRWLEE--QNSCPMCRRQIQYEDLVG 230 (230)
Q Consensus 162 ~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~-----H~FH~~CI~~Wl~~--~~tCP~CR~~i~~~~l~~ 230 (230)
.+++..|-||..+=.. +.+-.=||+ ...|+.|+-+|++- ...|-+|..++.-+++.+
T Consensus 9 N~d~~~CRICr~e~~~------------d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~ 72 (1175)
T COG5183 9 NEDKRSCRICRTEDIR------------DDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYK 72 (1175)
T ss_pred CccchhceeecCCCCC------------CCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecc
Confidence 3456899999886433 223344665 34899999999974 457999999998887653
No 98
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.74 E-value=0.22 Score=48.28 Aligned_cols=44 Identities=23% Similarity=0.661 Sum_probs=33.0
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCccccccc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRR 221 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~ 221 (230)
-..|.||+..|... .-.++.+-|||+.|.+|+..-. +.+|| |+.
T Consensus 11 ~l~c~ic~n~f~~~----------~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQ----------RLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred HhhchHHHHHHHHH----------hcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 34699998888762 4456778899999999998764 45788 543
No 99
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=87.05 E-value=0.83 Score=30.28 Aligned_cols=43 Identities=23% Similarity=0.681 Sum_probs=33.0
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeC-CCCccchhhHHHhhccCCcccc--cccC
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMP-CHHIFHASCISRWLEEQNSCPM--CRRQ 222 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~Wl~~~~tCP~--CR~~ 222 (230)
...|.+|-+.|.+ ++.+++-| ||=.+|+.|... ...|-. |...
T Consensus 5 ~~~C~~Cg~~~~~-----------~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 5 GCKCPVCGKKFKD-----------GDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred CccChhhCCcccC-----------CCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 5689999999987 66688888 999999999644 455654 5443
No 100
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.82 E-value=0.26 Score=43.58 Aligned_cols=31 Identities=26% Similarity=0.779 Sum_probs=22.9
Q ss_pred CCCccchhhHHHhhc-------------cCCcccccccCccccC
Q 042810 197 CHHIFHASCISRWLE-------------EQNSCPMCRRQIQYED 227 (230)
Q Consensus 197 C~H~FH~~CI~~Wl~-------------~~~tCP~CR~~i~~~~ 227 (230)
|....|..|+.+|+. .+-+||+||+++.-.|
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 455677889999874 3457999999876544
No 101
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.51 E-value=0.22 Score=43.21 Aligned_cols=50 Identities=30% Similarity=0.771 Sum_probs=34.6
Q ss_pred cCCCccccCchhhhhhhhhhccccccCcee-EEeCC-----CCccchhhHHHhhccCC--------cccccccCc
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQL-ITMPC-----HHIFHASCISRWLEEQN--------SCPMCRRQI 223 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v-~~LpC-----~H~FH~~CI~~Wl~~~~--------tCP~CR~~i 223 (230)
+.+.-|=||+..=++ .... -+-|| .|.-|..|+..|+..++ +||-|+.+-
T Consensus 18 e~eR~CWiCF~TdeD-----------n~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 18 ELERCCWICFATDED-----------NRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccceeEEEEeccCcc-----------cchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 346788999986443 2212 33465 38899999999996443 599998753
No 102
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=84.99 E-value=0.54 Score=37.96 Aligned_cols=13 Identities=23% Similarity=0.669 Sum_probs=9.9
Q ss_pred CCccccCchhhhh
Q 042810 165 GDNCAVCLEELIA 177 (230)
Q Consensus 165 ~~~C~ICle~~~~ 177 (230)
+..|+||||.-..
T Consensus 2 d~~CpICme~PHN 14 (162)
T PF07800_consen 2 DVTCPICMEHPHN 14 (162)
T ss_pred CccCceeccCCCc
Confidence 5689999997433
No 103
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=83.77 E-value=0.68 Score=41.33 Aligned_cols=45 Identities=29% Similarity=0.606 Sum_probs=32.9
Q ss_pred CCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCcc
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQ 224 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~ 224 (230)
+-.+|+||.+.+.. .+.+-+=||.-|..|=. +..+.||.||.++.
T Consensus 47 ~lleCPvC~~~l~~-------------Pi~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSP-------------PIFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCcc-------------cceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 45689999998855 23332237888888865 45788999999886
No 104
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=83.37 E-value=0.67 Score=36.40 Aligned_cols=51 Identities=18% Similarity=0.468 Sum_probs=36.4
Q ss_pred CCCccccCchhhhhhhhhhccccccCceeEEeC---CCCccchhhHHHhhc---cCCcccccccCccccC
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITMP---CHHIFHASCISRWLE---EQNSCPMCRRQIQYED 227 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~Lp---C~H~FH~~CI~~Wl~---~~~tCP~CR~~i~~~~ 227 (230)
.--+|-||.|.-.+ +--.-| ||-..|..|.....+ ....||+|+..+....
T Consensus 79 ~lYeCnIC~etS~e-------------e~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAE-------------ERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccch-------------hhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 45689999997544 122223 999999998866444 4578999999886543
No 105
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=81.95 E-value=0.45 Score=30.89 Aligned_cols=42 Identities=19% Similarity=0.604 Sum_probs=18.7
Q ss_pred ccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccC-----CcccccccC
Q 042810 167 NCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQ-----NSCPMCRRQ 222 (230)
Q Consensus 167 ~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~-----~tCP~CR~~ 222 (230)
.|+|-...+.. .++-..|.|.-+.+ +..|+... =.||+|.++
T Consensus 4 ~CPls~~~i~~-------------P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI-------------PVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS-------------EEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe-------------CccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 57777776633 34444599986544 45666432 269999864
No 106
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.81 E-value=0.7 Score=44.55 Aligned_cols=47 Identities=36% Similarity=0.966 Sum_probs=38.5
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCccccC
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQYED 227 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~~~ 227 (230)
+..+.|.||+.+. . .+..+|. |..|...|+..+..||+|+..+..++
T Consensus 477 ~~~~~~~~~~~~~-~--------------~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-S--------------ARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred cccCcchHHHHHH-H--------------hcccccc---chhHHHhhhhhccccCCCchhhhccc
Confidence 4577899999987 3 4556677 89999999999999999998776655
No 107
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=81.62 E-value=0.32 Score=47.73 Aligned_cols=47 Identities=28% Similarity=0.750 Sum_probs=37.6
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccC---CcccccccCccc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQ---NSCPMCRRQIQY 225 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~---~tCP~CR~~i~~ 225 (230)
..+|+||...+.. ...+.|.|.|+..|+..-|..+ ..||+|+..+..
T Consensus 21 ~lEc~ic~~~~~~--------------p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVKE--------------PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEeec--------------cchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 5689999999866 4677899999999997766544 479999976643
No 108
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=81.18 E-value=0.61 Score=41.06 Aligned_cols=50 Identities=28% Similarity=0.743 Sum_probs=35.6
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCC-----CccchhhHHHhhc--cCCcccccccCcc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCH-----HIFHASCISRWLE--EQNSCPMCRRQIQ 224 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~-----H~FH~~CI~~Wl~--~~~tCP~CR~~i~ 224 (230)
+..|-||.++.... .......||. +..|..|+..|+. ....|.+|.....
T Consensus 78 ~~~cRIc~~~~~~~----------~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEES----------NGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccc----------cccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 57899999976541 1114556764 5579999999997 4567999987543
No 109
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.42 E-value=0.62 Score=43.03 Aligned_cols=39 Identities=21% Similarity=0.583 Sum_probs=27.2
Q ss_pred CCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhcc
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEE 212 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~ 212 (230)
...+|.||+.+.... .+.-....|+|.||.+|..+-++.
T Consensus 145 ~~~~C~iC~~e~~~~----------~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEA----------EDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccH----------hhhHHHhcccchhhhHHhHHHhhh
Confidence 467899999444331 122334569999999999988764
No 110
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=77.22 E-value=1.4 Score=37.22 Aligned_cols=46 Identities=26% Similarity=0.651 Sum_probs=36.9
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQI 223 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i 223 (230)
-..|-+|.+-.-. .++.-.|+-.+|..|+...+.+...||.|..-+
T Consensus 181 lk~Cn~Ch~LvIq-------------g~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w 226 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQ-------------GIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLW 226 (235)
T ss_pred HHHHhHhHHHhhe-------------eeccCcccchhhhHHHHHHhcccCcCCchhccc
Confidence 4689999987633 355566888899999999999999999995433
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.46 E-value=2 Score=42.66 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=20.2
Q ss_pred CCCccchhhHHHhhccCCcccc
Q 042810 197 CHHIFHASCISRWLEEQNSCPM 218 (230)
Q Consensus 197 C~H~FH~~CI~~Wl~~~~tCP~ 218 (230)
|||.-|..|+.+|+.....||.
T Consensus 799 C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 799 CGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred ccccccHHHHHHHHhcCCCCcc
Confidence 9999999999999988887766
No 112
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=76.36 E-value=1.5 Score=24.26 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=13.0
Q ss_pred CCCCcccccccccee
Q 042810 16 SNNPLMCPVGNIGIV 30 (230)
Q Consensus 16 ~~~~~~~~~~~~~~~ 30 (230)
...||.||+|...|.
T Consensus 11 ~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 11 GEKPYKCPYCGKSFS 25 (26)
T ss_dssp SSSSEEESSSSEEES
T ss_pred CCCCCCCCCCcCeeC
Confidence 568999999999885
No 113
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.03 E-value=2.5 Score=36.78 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=37.5
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCccccCCC
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQYEDLV 229 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~~~l~ 229 (230)
.-.|+|=.-+|.. ...-....+|||+|-..-+.+- ...+|++|.+....+|+|
T Consensus 111 ~fiCPvtgleMng----------~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 111 RFICPVTGLEMNG----------KYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVI 163 (293)
T ss_pred eeecccccceecc----------eEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeE
Confidence 4568876555433 1223445579999998877764 367899999999988875
No 114
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.58 E-value=1.5 Score=43.67 Aligned_cols=52 Identities=17% Similarity=0.491 Sum_probs=35.5
Q ss_pred ccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCccccccc
Q 042810 162 VKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRR 221 (230)
Q Consensus 162 ~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~ 221 (230)
..-++.|.-|.+....+. ..-..++++.|+|+||..|+..-..+.+ |-.|..
T Consensus 781 v~~e~rc~~c~~~~l~~~-------~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~~ 832 (846)
T KOG2066|consen 781 VSVEERCSSCFEPNLPSG-------AAFDSVVVFHCGHMYHKECLMMESLRNA-CNIESG 832 (846)
T ss_pred EeehhhhhhhcccccccC-------cccceeeEEEccchhhhcccccHHHhcc-cChhhc
Confidence 344678999998876521 1125688899999999999976654443 655533
No 115
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=67.28 E-value=4 Score=36.72 Aligned_cols=56 Identities=27% Similarity=0.616 Sum_probs=37.4
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeCCCCc--cchhhHHHhhcc------CCcccccccCc
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHI--FHASCISRWLEE------QNSCPMCRRQI 223 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~--FH~~CI~~Wl~~------~~tCP~CR~~i 223 (230)
..-.+|++=+..+.......+.-....+.-+-|.|||+ +| .|=.+ .+.||+||..-
T Consensus 288 A~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H-----~WG~~e~~g~~~r~CPmC~~~g 351 (429)
T KOG3842|consen 288 AARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYH-----NWGVRENTGQRERECPMCRVVG 351 (429)
T ss_pred ccCCCCCcccceeecccccccccccccCCeEEEecccccccc-----ccccccccCcccCcCCeeeeec
Confidence 34678999998887654444433444566677899998 44 67422 35799999743
No 116
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=66.78 E-value=2.6 Score=23.58 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=6.6
Q ss_pred ccccCchhhhh
Q 042810 167 NCAVCLEELIA 177 (230)
Q Consensus 167 ~C~ICle~~~~ 177 (230)
.|+-|...+..
T Consensus 2 ~CP~C~~~V~~ 12 (26)
T PF10571_consen 2 TCPECGAEVPE 12 (26)
T ss_pred cCCCCcCCchh
Confidence 46667666533
No 117
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=66.41 E-value=2 Score=39.56 Aligned_cols=60 Identities=20% Similarity=0.573 Sum_probs=0.0
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhc------cCCcccccccCccc
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLE------EQNSCPMCRRQIQY 225 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~------~~~tCP~CR~~i~~ 225 (230)
..-.+|++=+..+..............+.-+-|.|||++.. ..|-. +.++||+||..-+.
T Consensus 275 a~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 275 AGRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp ---------------------------------------------------------------------
T ss_pred hcCCCCCcCCCccccccccccccccccCceeeccccceeee---cccccccccccccccCCCccccCCc
Confidence 34678998877776533222222223444555779998763 37853 24689999985443
No 118
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=63.45 E-value=4.4 Score=33.97 Aligned_cols=45 Identities=31% Similarity=0.719 Sum_probs=27.8
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeC-CCCccchhhHHHhhccCCccccccc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMP-CHHIFHASCISRWLEEQNSCPMCRR 221 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~Wl~~~~tCP~CR~ 221 (230)
+..|-+|-++ +. --... .+.+..-+ |+-+||..|.. +..||-|-+
T Consensus 152 GfiCe~C~~~-~~----IfPF~--~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSD-DI----IFPFQ--IDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCccCCCC-CC----CCCCC--CCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 6788888653 10 00000 12344445 99999999976 267999954
No 119
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=61.56 E-value=7.6 Score=22.46 Aligned_cols=20 Identities=20% Similarity=0.813 Sum_probs=14.6
Q ss_pred CCCccchhhHHHhhccCCcccccccCcc
Q 042810 197 CHHIFHASCISRWLEEQNSCPMCRRQIQ 224 (230)
Q Consensus 197 C~H~FH~~CI~~Wl~~~~tCP~CR~~i~ 224 (230)
=+..||..|. .|..|+..+.
T Consensus 19 ~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 19 LGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred CCccccccCC--------CCcccCCcCc
Confidence 4678888886 6888877653
No 120
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=60.93 E-value=7.9 Score=34.88 Aligned_cols=60 Identities=18% Similarity=0.393 Sum_probs=37.1
Q ss_pred CCCccccCchhhhhhhhhhccc--------cccCceeEEeCCCCccchhhHHHhhcc---------CCcccccccCcccc
Q 042810 164 AGDNCAVCLEELIAKEEIKGQT--------TEKKTQLITMPCHHIFHASCISRWLEE---------QNSCPMCRRQIQYE 226 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~--------~~~~~~v~~LpC~H~FH~~CI~~Wl~~---------~~tCP~CR~~i~~~ 226 (230)
.+.+|++|+..=.- +.-+. +...-.-..-||||+--++-..-|-+. +..||.|-..+..+
T Consensus 340 ~~r~CPmC~~~gp~---V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 340 RERECPMCRVVGPY---VPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred ccCcCCeeeeecce---eeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 47899999875211 00000 111122334689999999999999643 34699998776544
No 121
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=60.40 E-value=4.3 Score=25.72 Aligned_cols=43 Identities=23% Similarity=0.533 Sum_probs=27.4
Q ss_pred cccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhc------cCCccccccc
Q 042810 168 CAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLE------EQNSCPMCRR 221 (230)
Q Consensus 168 C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~------~~~tCP~CR~ 221 (230)
|.||...-.. ++.+.--.|+..||..|+..=.. ..=.||.|+.
T Consensus 2 C~vC~~~~~~-----------~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDD-----------GDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTT-----------SSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCC-----------CCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 7788773222 34444445999999999976432 1236888864
No 122
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.39 E-value=4.1 Score=38.27 Aligned_cols=52 Identities=23% Similarity=0.594 Sum_probs=36.2
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccC--------Ccc--cccccCccccC
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQ--------NSC--PMCRRQIQYED 227 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~--------~tC--P~CR~~i~~~~ 227 (230)
....+|.||.+.+.. ....+.|+|.|+..|...-+.++ -+| +-|++.+..+.
T Consensus 68 ~~~~~c~ic~~~~~~-------------~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~ 129 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG-------------EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDT 129 (444)
T ss_pred CccccCCcccCCCcc-------------hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCce
Confidence 345789999998731 36677899999999998877642 145 45666554443
No 123
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=59.63 E-value=8.8 Score=25.11 Aligned_cols=29 Identities=28% Similarity=0.591 Sum_probs=15.9
Q ss_pred eEEeC-CCCccchhhHHHhhccCCcccccc
Q 042810 192 LITMP-CHHIFHASCISRWLEEQNSCPMCR 220 (230)
Q Consensus 192 v~~Lp-C~H~FH~~CI~~Wl~~~~tCP~CR 220 (230)
...-| |++.|+.+|=.---+.=..||-|-
T Consensus 21 ~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 21 RYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp EE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred eEECCCCCCccccCcChhhhccccCCcCCC
Confidence 44556 999999999544445557899984
No 124
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=58.69 E-value=5 Score=27.22 Aligned_cols=38 Identities=18% Similarity=0.422 Sum_probs=20.0
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEE-eCCCCccchhhHHHhhc
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLIT-MPCHHIFHASCISRWLE 211 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~-LpC~H~FH~~CI~~Wl~ 211 (230)
.+...|.+|...|.. -..-.. --||++|+.+|......
T Consensus 7 ~~~~~C~~C~~~F~~-----------~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 7 SEASNCMICGKKFSL-----------FRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp GG-SB-TTT--B-BS-----------SS-EEE-TTT--EEECCCS-EEEE
T ss_pred CCCCcCcCcCCcCCC-----------ceeeEccCCCCCEECCchhCCEEc
Confidence 446789999999965 222333 34999999999987653
No 125
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.00 E-value=8.4 Score=35.61 Aligned_cols=48 Identities=23% Similarity=0.475 Sum_probs=34.2
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCccccc
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMC 219 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~C 219 (230)
+....|+.|.-.++-. .|.....-.|||.||..|..+|...+..|..|
T Consensus 304 ~~wr~CpkC~~~ie~~---------~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELS---------EGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred HhcCcCcccceeeeec---------CCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 4467899997776441 14444444599999999999998777666444
No 127
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=55.97 E-value=11 Score=28.81 Aligned_cols=21 Identities=14% Similarity=0.566 Sum_probs=16.1
Q ss_pred HHhhccCCcccccccCccccC
Q 042810 207 SRWLEEQNSCPMCRRQIQYED 227 (230)
Q Consensus 207 ~~Wl~~~~tCP~CR~~i~~~~ 227 (230)
...+.+...|+.|+++++.|.
T Consensus 79 TKmLGr~D~CM~C~~pLTLd~ 99 (114)
T PF11023_consen 79 TKMLGRVDACMHCKEPLTLDP 99 (114)
T ss_pred HhhhchhhccCcCCCcCccCc
Confidence 345667778999999987664
No 128
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=55.02 E-value=3.7 Score=39.88 Aligned_cols=28 Identities=32% Similarity=0.852 Sum_probs=20.2
Q ss_pred eeEEeCCCCccchhhHHHhhccCCccccccc
Q 042810 191 QLITMPCHHIFHASCISRWLEEQNSCPMCRR 221 (230)
Q Consensus 191 ~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~ 221 (230)
..+..-|+++||.+|... .+.-||.|-+
T Consensus 531 ~~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 531 TRRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred ceeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 344556999999999655 3445999943
No 129
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=53.28 E-value=3 Score=27.25 Aligned_cols=13 Identities=38% Similarity=1.076 Sum_probs=7.0
Q ss_pred CcccccccCcccc
Q 042810 214 NSCPMCRRQIQYE 226 (230)
Q Consensus 214 ~tCP~CR~~i~~~ 226 (230)
..||+|.+++..+
T Consensus 21 ~~CPlC~r~l~~e 33 (54)
T PF04423_consen 21 GCCPLCGRPLDEE 33 (54)
T ss_dssp EE-TTT--EE-HH
T ss_pred CcCCCCCCCCCHH
Confidence 3899999988754
No 130
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=52.61 E-value=13 Score=33.49 Aligned_cols=43 Identities=12% Similarity=-0.055 Sum_probs=34.2
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCc-cchhhHHHhhccCCcccccccCc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHI-FHASCISRWLEEQNSCPMCRRQI 223 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~-FH~~CI~~Wl~~~~tCP~CR~~i 223 (230)
..+|..|-+.+.. ..+.||+|. |+..|.. +-...+||+|....
T Consensus 343 ~~~~~~~~~~~~s--------------t~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 343 SLKGTSAGFGLLS--------------TIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hcccccccCceee--------------eEeecCCcccChhhhhh--cccCCccccccccc
Confidence 5678888887655 778899997 9999987 55678999997754
No 131
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=51.21 E-value=6 Score=39.72 Aligned_cols=49 Identities=14% Similarity=0.265 Sum_probs=33.8
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeC---CCCccchhhHHHhhcc------CCcccccccCc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMP---CHHIFHASCISRWLEE------QNSCPMCRRQI 223 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~Lp---C~H~FH~~CI~~Wl~~------~~tCP~CR~~i 223 (230)
...|.||.-++..++ +.....| |+|.||-.||..|..+ +-.|++|..-|
T Consensus 96 s~Ss~~C~~E~S~~~----------ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDV----------DSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccchhheecCCcc----------cccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 567888877776522 1122344 9999999999999753 34588887644
No 132
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=47.20 E-value=13 Score=22.35 Aligned_cols=33 Identities=15% Similarity=0.413 Sum_probs=19.6
Q ss_pred ccccCchhhhhhhhhhccccccCceeEEeCCCCccc
Q 042810 167 NCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFH 202 (230)
Q Consensus 167 ~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH 202 (230)
+|+-|...|..+++.-+ ..+..++.-.|+|+|.
T Consensus 4 ~CP~C~~~f~v~~~~l~---~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLP---AGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcc---cCCcEEECCCCCcEee
Confidence 58888888877543211 1234455445888885
No 133
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=46.88 E-value=8 Score=22.62 Aligned_cols=19 Identities=32% Similarity=1.036 Sum_probs=11.9
Q ss_pred CCCccchhhHHHhhccCCccccccc
Q 042810 197 CHHIFHASCISRWLEEQNSCPMCRR 221 (230)
Q Consensus 197 C~H~FH~~CI~~Wl~~~~tCP~CR~ 221 (230)
|||++-..- .+| .||+|..
T Consensus 7 CGy~y~~~~-~~~-----~CP~Cg~ 25 (33)
T cd00350 7 CGYIYDGEE-APW-----VCPVCGA 25 (33)
T ss_pred CCCEECCCc-CCC-----cCcCCCC
Confidence 666654432 344 8999976
No 134
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=45.98 E-value=11 Score=25.48 Aligned_cols=18 Identities=22% Similarity=0.724 Sum_probs=14.2
Q ss_pred cCCcccccccCccccCCC
Q 042810 212 EQNSCPMCRRQIQYEDLV 229 (230)
Q Consensus 212 ~~~tCP~CR~~i~~~~l~ 229 (230)
.+..||.|-.+++.++.+
T Consensus 2 ~HkHC~~CG~~Ip~~~~f 19 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPDESF 19 (59)
T ss_pred CCCcCCcCCCcCCcchhh
Confidence 467899999999887643
No 136
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=45.84 E-value=4.4 Score=35.74 Aligned_cols=49 Identities=16% Similarity=0.436 Sum_probs=20.2
Q ss_pred CCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCccccccc
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRR 221 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~ 221 (230)
....||||-..-..+. .. +...+.. .|.+|.-|-.+|--.+..||.|-.
T Consensus 171 ~~g~CPvCGs~P~~s~-l~---~~~~~G~-----R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSV-LR---GGEREGK-----RYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp T-SS-TTT---EEEEE-EE---------E-----EEEEETTT--EEE--TTS-TTT--
T ss_pred cCCcCCCCCCcCceEE-Ee---cCCCCcc-----EEEEcCCCCCeeeecCCCCcCCCC
Confidence 3579999987643210 00 0000011 345778899999877889999954
No 137
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=45.55 E-value=3.2 Score=28.96 Aligned_cols=40 Identities=23% Similarity=0.580 Sum_probs=21.2
Q ss_pred CccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCcc
Q 042810 166 DNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQ 224 (230)
Q Consensus 166 ~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~ 224 (230)
..|+.|..++.. .. +|.+|..|-.. +.....||-|..++.
T Consensus 2 ~~CP~C~~~L~~-----------------~~-~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEW-----------------QG-GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEE-----------------ET-TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEE-----------------eC-CEEECcccccc-ceecccCCCcccHHH
Confidence 468888887543 11 67777777665 455677888887663
No 138
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=44.90 E-value=17 Score=23.26 Aligned_cols=24 Identities=21% Similarity=0.700 Sum_probs=19.2
Q ss_pred CCCCccchhhHHHhhccCCcccccccCccccC
Q 042810 196 PCHHIFHASCISRWLEEQNSCPMCRRQIQYED 227 (230)
Q Consensus 196 pC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~~~ 227 (230)
.-+..||..|. +|-.|++++...+
T Consensus 17 ~~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 17 AMGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp ETTEEEETTTS--------BETTTTCBTTTSS
T ss_pred eCCcEEEcccc--------ccCCCCCccCCCe
Confidence 47788999886 7999998887664
No 139
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=43.77 E-value=7.7 Score=35.91 Aligned_cols=61 Identities=15% Similarity=0.372 Sum_probs=0.0
Q ss_pred CCccccCchhhhhhh---hhhcc--ccccCceeEEeCCCCccchhhHHHhhcc---------CCcccccccCccc
Q 042810 165 GDNCAVCLEELIAKE---EIKGQ--TTEKKTQLITMPCHHIFHASCISRWLEE---------QNSCPMCRRQIQY 225 (230)
Q Consensus 165 ~~~C~ICle~~~~~~---~~~~~--~~~~~~~v~~LpC~H~FH~~CI~~Wl~~---------~~tCP~CR~~i~~ 225 (230)
..+|++|+..-.--. ..+.. -+...-.-.--||||+-=++...-|-+. +.-||.|-..+..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 678999986522100 00000 0111122344689999999999999642 3469999887764
No 140
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=43.66 E-value=11 Score=26.06 Aligned_cols=11 Identities=36% Similarity=1.204 Sum_probs=8.2
Q ss_pred cchhhHHHhhc
Q 042810 201 FHASCISRWLE 211 (230)
Q Consensus 201 FH~~CI~~Wl~ 211 (230)
||+.|+..|+.
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 141
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=42.31 E-value=18 Score=32.69 Aligned_cols=50 Identities=22% Similarity=0.618 Sum_probs=35.2
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCcc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQ 224 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~ 224 (230)
...|+||.+.... ......-.||++..|..|...-.....+||.||++..
T Consensus 249 ~~s~p~~~~~~~~----------~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 249 PPSCPICYEDLDL----------TDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCCcccc----------cccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 4789999997633 0122222348888888888877777889999997653
No 142
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.43 E-value=8.4 Score=34.41 Aligned_cols=47 Identities=30% Similarity=0.648 Sum_probs=37.2
Q ss_pred cCCCccccCchhhhhhhhhhccccccCceeEEeC-CCCccchhhHHHhhccCCcccccccCc
Q 042810 163 KAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMP-CHHIFHASCISRWLEEQNSCPMCRRQI 223 (230)
Q Consensus 163 ~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~Wl~~~~tCP~CR~~i 223 (230)
...+.|-||...+.. +.+.. |+|.|+..|-..|.+..+-||.||...
T Consensus 103 ~~~~~~~~~~g~l~v--------------pt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 103 QDHDICYICYGKLTV--------------PTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred CCccceeeeeeeEEe--------------cccccCceeeeeecCCchhhhhhhccchhhcCc
Confidence 346689999887755 22222 999999999999999999999998754
No 143
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=41.18 E-value=18 Score=32.75 Aligned_cols=34 Identities=21% Similarity=0.502 Sum_probs=24.0
Q ss_pred CceeEEeCCCCccchhhHHHhhccCCcccccccC
Q 042810 189 KTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQ 222 (230)
Q Consensus 189 ~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~ 222 (230)
+...+.-.|.|+||.+|=.--.+.=..||.|..+
T Consensus 343 ~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh~ 376 (378)
T KOG2807|consen 343 SGRYRCESCKNVFCLDCDVFIHESLHNCPGCEHK 376 (378)
T ss_pred CCcEEchhccceeeccchHHHHhhhhcCCCcCCC
Confidence 3344444599999999965555555689999753
No 144
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=41.13 E-value=11 Score=19.46 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=9.1
Q ss_pred ccccccccceee
Q 042810 20 LMCPVGNIGIVL 31 (230)
Q Consensus 20 ~~~~~~~~~~~~ 31 (230)
|.||.|...|-.
T Consensus 1 y~C~~C~~~f~~ 12 (23)
T PF00096_consen 1 YKCPICGKSFSS 12 (23)
T ss_dssp EEETTTTEEESS
T ss_pred CCCCCCCCccCC
Confidence 578888888754
No 145
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=41.06 E-value=12 Score=24.39 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=16.4
Q ss_pred ceeEEe-CCCCccchhhHHHhh
Q 042810 190 TQLITM-PCHHIFHASCISRWL 210 (230)
Q Consensus 190 ~~v~~L-pC~H~FH~~CI~~Wl 210 (230)
...+.- .|+|.||..|-.+|.
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~H 59 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPWH 59 (64)
T ss_pred CCeeECCCCCCeECCCCCCcCC
Confidence 344555 499999999999994
No 146
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.94 E-value=26 Score=26.74 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=34.9
Q ss_pred CCccccCchhhhhhhh-hhccccccCceeEEeC-CCCccchhhHHHhhccCCccccccc
Q 042810 165 GDNCAVCLEELIAKEE-IKGQTTEKKTQLITMP-CHHIFHASCISRWLEEQNSCPMCRR 221 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~-~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~Wl~~~~tCP~CR~ 221 (230)
...|--|+..|..... ..+. ........-+ |++.|+.+|=.-|.+.=+.||-|-.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~--~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDE--LKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CCcccCcCCCCCCcccccccc--cccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 3469999998854110 0000 0011123334 9999999998888888888999963
No 147
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=40.01 E-value=18 Score=23.49 Aligned_cols=22 Identities=32% Similarity=0.824 Sum_probs=14.8
Q ss_pred CCCccchhhHHHhhccCCccccc
Q 042810 197 CHHIFHASCISRWLEEQNSCPMC 219 (230)
Q Consensus 197 C~H~FH~~CI~~Wl~~~~tCP~C 219 (230)
|||.|-.. |..-......||.|
T Consensus 34 Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCeeEcc-HhhhccCCCCCCCC
Confidence 77877544 44444567789988
No 148
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=39.95 E-value=15 Score=24.70 Aligned_cols=18 Identities=22% Similarity=0.612 Sum_probs=14.7
Q ss_pred cCCcccccccCccccCCC
Q 042810 212 EQNSCPMCRRQIQYEDLV 229 (230)
Q Consensus 212 ~~~tCP~CR~~i~~~~l~ 229 (230)
-++.||+|-+.|+.++.+
T Consensus 7 PH~HC~VCg~aIp~de~~ 24 (64)
T COG4068 7 PHRHCVVCGKAIPPDEQV 24 (64)
T ss_pred CCccccccCCcCCCccch
Confidence 367899999999988753
No 149
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=38.89 E-value=22 Score=32.08 Aligned_cols=47 Identities=19% Similarity=0.366 Sum_probs=32.1
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhcc---CCcccccccC
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEE---QNSCPMCRRQ 222 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~---~~tCP~CR~~ 222 (230)
--.||+=.+.-.+ ...+..|.|||+.-..-++..-+. .-.||.|-..
T Consensus 336 ~FiCPVlKe~~t~-----------ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 336 LFICPVLKELCTD-----------ENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred eeeccccHhhhcc-----------cCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 4468776555433 556788899999988888775432 2369999543
No 150
>PHA00616 hypothetical protein
Probab=38.48 E-value=9.7 Score=24.14 Aligned_cols=14 Identities=14% Similarity=-0.157 Sum_probs=11.2
Q ss_pred Cccccccccceeee
Q 042810 19 PLMCPVGNIGIVLK 32 (230)
Q Consensus 19 ~~~~~~~~~~~~~~ 32 (230)
||+||.|...|...
T Consensus 1 pYqC~~CG~~F~~~ 14 (44)
T PHA00616 1 MYQCLRCGGIFRKK 14 (44)
T ss_pred CCccchhhHHHhhH
Confidence 78899998888653
No 151
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=37.14 E-value=20 Score=23.05 Aligned_cols=36 Identities=19% Similarity=0.448 Sum_probs=24.4
Q ss_pred CccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhc
Q 042810 166 DNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLE 211 (230)
Q Consensus 166 ~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~ 211 (230)
..|.+|...|... ......-.||++|+.+|......
T Consensus 3 ~~C~~C~~~F~~~----------~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLT----------RRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCC----------ccccccCcCcCCcChHHcCCeee
Confidence 5688998887551 11222334999999999977654
No 152
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.12 E-value=19 Score=31.99 Aligned_cols=36 Identities=25% Similarity=0.475 Sum_probs=28.2
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCC----CCccchhhHHHhhccCC
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPC----HHIFHASCISRWLEEQN 214 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC----~H~FH~~CI~~Wl~~~~ 214 (230)
...|.+|.|.+++ .....| .|.||..|-++-++++.
T Consensus 268 pLcCTLC~ERLED--------------THFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 268 PLCCTLCHERLED--------------THFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred ceeehhhhhhhcc--------------CceeecCCCcccceecccCHHHHHhhc
Confidence 5789999999977 333444 69999999999987653
No 153
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=36.06 E-value=16 Score=19.69 Aligned_cols=14 Identities=14% Similarity=0.181 Sum_probs=10.7
Q ss_pred Cccccccccceeee
Q 042810 19 PLMCPVGNIGIVLK 32 (230)
Q Consensus 19 ~~~~~~~~~~~~~~ 32 (230)
||.|.+|...|-..
T Consensus 1 ~~~C~~C~~~F~~~ 14 (27)
T PF13912_consen 1 PFECDECGKTFSSL 14 (27)
T ss_dssp SEEETTTTEEESSH
T ss_pred CCCCCccCCccCCh
Confidence 68899998888543
No 154
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.24 E-value=27 Score=23.33 Aligned_cols=46 Identities=26% Similarity=0.639 Sum_probs=30.1
Q ss_pred CccccCchhhhhhhhhhccccccCceeEEeCCCC--ccchhhHHHhhccCCcccccccCccc
Q 042810 166 DNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHH--IFHASCISRWLEEQNSCPMCRRQIQY 225 (230)
Q Consensus 166 ~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H--~FH~~CI~~Wl~~~~tCP~CR~~i~~ 225 (230)
..|-.|-.++..+ ...... |++ .||.+|....| ++.||-|-..+..
T Consensus 6 pnCE~C~~dLp~~----------s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPD----------SPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCC----------CCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 3566676666551 112222 543 49999999876 7799999877643
No 155
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=34.69 E-value=23 Score=19.96 Aligned_cols=29 Identities=17% Similarity=0.390 Sum_probs=10.0
Q ss_pred ccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhH
Q 042810 167 NCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCI 206 (230)
Q Consensus 167 ~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI 206 (230)
.|.+|.+.... +..-.-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-----------~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-----------GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S-------------EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-----------CceEECccCCCccChhcC
Confidence 47777776532 234455569999999885
No 156
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.29 E-value=6.5 Score=34.53 Aligned_cols=49 Identities=20% Similarity=0.490 Sum_probs=37.2
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeC--------CCCccchhhHHHhhccC-Cccccccc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMP--------CHHIFHASCISRWLEEQ-NSCPMCRR 221 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~Lp--------C~H~FH~~CI~~Wl~~~-~tCP~CR~ 221 (230)
+..|.||...+...+ ....++++. |+|..+..|+..-+.+. ..||.||.
T Consensus 207 ~~~c~ic~~~~~~n~--------~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~ 264 (296)
T KOG4185|consen 207 EKLCEICERIYSEND--------EKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTW 264 (296)
T ss_pred HHHHHHHHHHhhccc--------cccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccc
Confidence 467999999887411 134566667 99999999999987654 48999986
No 157
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=32.69 E-value=20 Score=18.09 Aligned_cols=11 Identities=18% Similarity=0.573 Sum_probs=6.1
Q ss_pred cccccccccee
Q 042810 20 LMCPVGNIGIV 30 (230)
Q Consensus 20 ~~~~~~~~~~~ 30 (230)
|.||+|...|-
T Consensus 1 ~~C~~C~~~~~ 11 (24)
T PF13894_consen 1 FQCPICGKSFR 11 (24)
T ss_dssp EE-SSTS-EES
T ss_pred CCCcCCCCcCC
Confidence 56888877664
No 158
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=32.62 E-value=20 Score=34.88 Aligned_cols=44 Identities=23% Similarity=0.446 Sum_probs=26.6
Q ss_pred cCCCccccCchhhhh--hhhhhccccccCceeEEeCCCCccchhhHHHh
Q 042810 163 KAGDNCAVCLEELIA--KEEIKGQTTEKKTQLITMPCHHIFHASCISRW 209 (230)
Q Consensus 163 ~~~~~C~ICle~~~~--~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~W 209 (230)
+....|+||.|.|+. +++.+.|-. .+ .+.+.=|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~--kd-aV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMY--KD-AVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheee--cc-eeeeccCceeeccccchH
Confidence 446789999999977 212222211 11 222325788999999764
No 159
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=31.88 E-value=11 Score=33.49 Aligned_cols=38 Identities=26% Similarity=0.537 Sum_probs=27.1
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccC
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQ 213 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~ 213 (230)
-..|.+|+++|.. +.......|--+||..|+..|+...
T Consensus 214 ~rvC~~CF~el~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 214 IRVCDICFEELEK-----------GARGDREDSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred ceecHHHHHHHhc-----------ccccchhhccccccccccccccccc
Confidence 3489999999975 2223334444499999999998753
No 160
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=31.10 E-value=23 Score=21.13 Aligned_cols=33 Identities=21% Similarity=0.451 Sum_probs=19.5
Q ss_pred ccccCchhhhhhhhhhccccccCceeEEeCCCCccc
Q 042810 167 NCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFH 202 (230)
Q Consensus 167 ~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH 202 (230)
+|+=|.-.|..+++.-. ..+..++.-.|+|+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip---~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIP---PKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCC---CCCcEEECCCCCCEeC
Confidence 57888887777543221 2244455555888874
No 161
>PLN02189 cellulose synthase
Probab=30.37 E-value=43 Score=34.94 Aligned_cols=52 Identities=19% Similarity=0.500 Sum_probs=34.8
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeC-CCCccchhhHHHhh-ccCCcccccccCcc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMP-CHHIFHASCISRWL-EEQNSCPMCRRQIQ 224 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~Lp-C~H~FH~~CI~~Wl-~~~~tCP~CR~~i~ 224 (230)
...|.||-+++... ..|+.-+--. |+--.|..|..-=- +-++.||.|+.+..
T Consensus 34 ~~~C~iCgd~vg~~--------~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLT--------VDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcC--------CCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 56899999998642 1144333333 88889999994322 23568999998765
No 162
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=30.30 E-value=17 Score=22.40 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=15.9
Q ss_pred EeCCCCccchhhHHHhhccCCccccccc
Q 042810 194 TMPCHHIFHASCISRWLEEQNSCPMCRR 221 (230)
Q Consensus 194 ~LpC~H~FH~~CI~~Wl~~~~tCP~CR~ 221 (230)
...|||.|-..--..= .....||.|..
T Consensus 8 C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 8 CEECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred eCCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 3458888764421111 23457999988
No 163
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=30.28 E-value=13 Score=32.59 Aligned_cols=50 Identities=24% Similarity=0.636 Sum_probs=32.9
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEe--C-CCCccchhhHHHhhc---------cCCcccccccCcc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITM--P-CHHIFHASCISRWLE---------EQNSCPMCRRQIQ 224 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~L--p-C~H~FH~~CI~~Wl~---------~~~tCP~CR~~i~ 224 (230)
..+|-+|.+++... +.....- | |.-.+|..|+..-+. ....||.|++...
T Consensus 182 ~~~celc~~ei~e~----------~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 182 NVECELCEKEILET----------DWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred chhhHHHHHHhccc----------cceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 36899999998541 1111111 2 888999999988432 1346999988543
No 164
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=30.00 E-value=32 Score=34.62 Aligned_cols=29 Identities=34% Similarity=0.788 Sum_probs=21.0
Q ss_pred eeEEe-C-CCCccchhhHHHhhccCCcccccccCc
Q 042810 191 QLITM-P-CHHIFHASCISRWLEEQNSCPMCRRQI 223 (230)
Q Consensus 191 ~v~~L-p-C~H~FH~~CI~~Wl~~~~tCP~CR~~i 223 (230)
.+.++ | |.|.-|..=|.. .+.||+|...+
T Consensus 1154 ~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1154 NIFWLCPRCKHRAHQHEISK----YNCCPLCHSME 1184 (1189)
T ss_pred ceEEEccccccccccccccc----cccCccccChh
Confidence 34555 5 999888776643 68999998754
No 165
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=29.39 E-value=16 Score=20.30 Aligned_cols=11 Identities=36% Similarity=1.084 Sum_probs=8.5
Q ss_pred cccccccCccc
Q 042810 215 SCPMCRRQIQY 225 (230)
Q Consensus 215 tCP~CR~~i~~ 225 (230)
.||+|.+.++.
T Consensus 3 ~CPiC~~~v~~ 13 (26)
T smart00734 3 QCPVCFREVPE 13 (26)
T ss_pred cCCCCcCcccH
Confidence 59999887743
No 166
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=28.24 E-value=33 Score=29.50 Aligned_cols=24 Identities=21% Similarity=0.569 Sum_probs=18.1
Q ss_pred cchhhHHHhhccCCcccccccCcc
Q 042810 201 FHASCISRWLEEQNSCPMCRRQIQ 224 (230)
Q Consensus 201 FH~~CI~~Wl~~~~tCP~CR~~i~ 224 (230)
-|..|-.+-.+....||+|++.-.
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsR 219 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSR 219 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccc
Confidence 356777777777889999987543
No 167
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=27.50 E-value=35 Score=25.90 Aligned_cols=48 Identities=17% Similarity=0.394 Sum_probs=30.4
Q ss_pred CCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCC--ccccccc
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQN--SCPMCRR 221 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~--tCP~CR~ 221 (230)
.+..|++|...|... .+.......|+|.+|..|-.. ..... .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l---------~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFL---------FNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCT---------STTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCccccc---------CCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 578999999877441 133455666999999999755 21122 4888865
No 168
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=27.03 E-value=40 Score=24.61 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=29.6
Q ss_pred CCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCcccccccCcccc
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQYE 226 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 226 (230)
....|.-|...+.- -+ .+| |-.|+..+..|..|+++++..
T Consensus 32 ~rS~C~~C~~~L~~-----------~~---lIP---------i~S~l~lrGrCr~C~~~I~~~ 71 (92)
T PF06750_consen 32 PRSHCPHCGHPLSW-----------WD---LIP---------ILSYLLLRGRCRYCGAPIPPR 71 (92)
T ss_pred CCCcCcCCCCcCcc-----------cc---cch---------HHHHHHhCCCCcccCCCCChH
Confidence 35678888887755 11 222 779999999999999998753
No 169
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=26.75 E-value=39 Score=30.41 Aligned_cols=49 Identities=18% Similarity=0.414 Sum_probs=29.7
Q ss_pred CCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhhccCCccccccc
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWLEEQNSCPMCRR 221 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~ 221 (230)
....|+||-..-..+- +. ....+..+. .+|.-|-..|--.+-.||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~-v~---~~~~~G~Ry-----L~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSV-VQ---IGTTQGLRY-----LHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhhe-ee---ccCCCCceE-----EEcCCCCCcccccCccCCCCCC
Confidence 4689999987643210 00 000122333 3566688899878889999965
No 170
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.90 E-value=36 Score=29.73 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=29.7
Q ss_pred ccCCCccccCchhhhhhhhhhccccccCceeEEeCCCCccchhhHHHhh
Q 042810 162 VKAGDNCAVCLEELIAKEEIKGQTTEKKTQLITMPCHHIFHASCISRWL 210 (230)
Q Consensus 162 ~~~~~~C~ICle~~~~~~~~~~~~~~~~~~v~~LpC~H~FH~~CI~~Wl 210 (230)
.++.+-|+.|+..+.+ ++..|=||+|++.||-+.+
T Consensus 40 iK~FdcCsLtLqPc~d--------------Pvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRD--------------PVITPDGYLFDREAILEYI 74 (303)
T ss_pred cCCcceeeeecccccC--------------CccCCCCeeeeHHHHHHHH
Confidence 3457789999998866 7888999999999999875
No 171
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=25.70 E-value=37 Score=31.08 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=12.1
Q ss_pred cccCCCccccCchhhh
Q 042810 161 LVKAGDNCAVCLEELI 176 (230)
Q Consensus 161 ~~~~~~~C~ICle~~~ 176 (230)
....++-|++|-+.++
T Consensus 11 dedl~ElCPVCGDkVS 26 (475)
T KOG4218|consen 11 DEDLGELCPVCGDKVS 26 (475)
T ss_pred ccccccccccccCccc
Confidence 3445789999999863
No 172
>COG3369 Zinc finger domain containing protein (CDGSH-type) [Function unknown]
Probab=25.64 E-value=68 Score=22.80 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=18.2
Q ss_pred EEEEEeeeeccCCCCccccccccc
Q 042810 5 VNLHLEGTGSCSNNPLMCPVGNIG 28 (230)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (230)
.-.||=.-|.++|.|| |.=.|+-
T Consensus 29 ~~~~LCrCG~S~NKPf-CDGtH~k 51 (78)
T COG3369 29 EQAALCRCGHSENKPF-CDGTHKK 51 (78)
T ss_pred eEEEEEeccCcCCCCc-cCCcccc
Confidence 3456777899999999 9888863
No 173
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=24.69 E-value=40 Score=22.74 Aligned_cols=30 Identities=20% Similarity=0.808 Sum_probs=18.2
Q ss_pred eEEeCCCCccchhhHHHhhcc------CCcccccccCccc
Q 042810 192 LITMPCHHIFHASCISRWLEE------QNSCPMCRRQIQY 225 (230)
Q Consensus 192 v~~LpC~H~FH~~CI~~Wl~~------~~tCP~CR~~i~~ 225 (230)
..+-.|.- .+| ..|.+. ..+||+|..+...
T Consensus 16 t~VW~Ct~---e~C-~gWmR~nFs~~~~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 16 TKVWECTS---EDC-NGWMRDNFSFEEEPVCPLCKSPMVS 51 (59)
T ss_pred eeeEEeCC---CCC-CcccccccccCCCccCCCcCCcccc
Confidence 44445655 334 257543 4689999987643
No 174
>PLN02195 cellulose synthase A
Probab=24.69 E-value=74 Score=33.04 Aligned_cols=56 Identities=20% Similarity=0.392 Sum_probs=36.5
Q ss_pred CCCccccCchhhhhhhhhhccccccCce-eEEeCCCCccchhhHHHhh-ccCCcccccccCccccC
Q 042810 164 AGDNCAVCLEELIAKEEIKGQTTEKKTQ-LITMPCHHIFHASCISRWL-EEQNSCPMCRRQIQYED 227 (230)
Q Consensus 164 ~~~~C~ICle~~~~~~~~~~~~~~~~~~-v~~LpC~H~FH~~CI~~Wl-~~~~tCP~CR~~i~~~~ 227 (230)
....|.||-+++.... .|+. +..--|+---|+.|..-=- +-++.||.|+.+..+++
T Consensus 5 ~~~~c~~cgd~~~~~~--------~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~~~ 62 (977)
T PLN02195 5 GAPICATCGEEVGVDS--------NGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDAEN 62 (977)
T ss_pred CCccceecccccCcCC--------CCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccccc
Confidence 4568999999875521 1333 3333488889999983211 12468999998876443
No 175
>PF05353 Atracotoxin: Delta Atracotoxin; InterPro: IPR008017 Delta atracotoxin produces potentially fatal neurotoxic symptoms in primates by slowing the inactivation of voltage-gated sodium channels []. The structure of atracotoxin comprises a core beta region containing a triple-stranded a thumb-like extension protruding from the beta region and a C-terminal helix. The beta region contains a cystine knot motif, a feature seen in other neurotoxic polypeptides [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2ROO_A 1VTX_A 1QDP_A.
Probab=23.99 E-value=13 Score=22.98 Aligned_cols=15 Identities=40% Similarity=1.028 Sum_probs=11.5
Q ss_pred hhhHHHhhccCCccc
Q 042810 203 ASCISRWLEEQNSCP 217 (230)
Q Consensus 203 ~~CI~~Wl~~~~tCP 217 (230)
.+||..|+.++.+|-
T Consensus 18 mkCiyAWYnqq~sCq 32 (42)
T PF05353_consen 18 MKCIYAWYNQQSSCQ 32 (42)
T ss_dssp EEEEE-SSGSTEEEE
T ss_pred HHHHHHHHccCCchH
Confidence 479999999888874
No 176
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=23.80 E-value=25 Score=18.86 Aligned_cols=7 Identities=43% Similarity=1.160 Sum_probs=3.1
Q ss_pred ccccccc
Q 042810 215 SCPMCRR 221 (230)
Q Consensus 215 tCP~CR~ 221 (230)
.||.|-+
T Consensus 15 fC~~CG~ 21 (23)
T PF13240_consen 15 FCPNCGT 21 (23)
T ss_pred chhhhCC
Confidence 3444443
No 177
>PLN02436 cellulose synthase A
Probab=23.20 E-value=67 Score=33.72 Aligned_cols=52 Identities=19% Similarity=0.547 Sum_probs=34.3
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEe-CCCCccchhhHHHhh-ccCCcccccccCcc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITM-PCHHIFHASCISRWL-EEQNSCPMCRRQIQ 224 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~L-pC~H~FH~~CI~~Wl-~~~~tCP~CR~~i~ 224 (230)
...|-||-+++... ..|+.=+-- -|+--.|..|..-=- +-++.||.|+.+..
T Consensus 36 ~~iCqICGD~Vg~t--------~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELT--------VDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcC--------CCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 56899999997542 114433333 377779999994322 23568999998765
No 178
>PLN02248 cellulose synthase-like protein
Probab=22.04 E-value=60 Score=34.19 Aligned_cols=39 Identities=18% Similarity=0.453 Sum_probs=29.8
Q ss_pred CceeEEeCCCCccchhhHHHhhccCCcccccccCccccC
Q 042810 189 KTQLITMPCHHIFHASCISRWLEEQNSCPMCRRQIQYED 227 (230)
Q Consensus 189 ~~~v~~LpC~H~FH~~CI~~Wl~~~~tCP~CR~~i~~~~ 227 (230)
++.+.--.|++..|++|...-++....||-|+.+....|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1135)
T PLN02248 142 GEDLLPCECGFKICRDCYIDAVKSGGICPGCKEPYKVTD 180 (1135)
T ss_pred cccCCcccccchhHHhHhhhhhhcCCCCCCCcccccccc
Confidence 334433348899999999999999899999998765433
No 179
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=21.38 E-value=34 Score=19.30 Aligned_cols=10 Identities=30% Similarity=1.175 Sum_probs=5.5
Q ss_pred cccccccCcc
Q 042810 215 SCPMCRRQIQ 224 (230)
Q Consensus 215 tCP~CR~~i~ 224 (230)
+||.|...+.
T Consensus 1 ~CP~C~s~l~ 10 (28)
T PF03119_consen 1 TCPVCGSKLV 10 (28)
T ss_dssp B-TTT--BEE
T ss_pred CcCCCCCEeE
Confidence 5999988875
No 180
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=20.69 E-value=59 Score=28.07 Aligned_cols=22 Identities=23% Similarity=0.616 Sum_probs=16.5
Q ss_pred chhhHHHhhccCCcccccccCc
Q 042810 202 HASCISRWLEEQNSCPMCRRQI 223 (230)
Q Consensus 202 H~~CI~~Wl~~~~tCP~CR~~i 223 (230)
|..|-.+-.+...+||+|+..-
T Consensus 252 ClsChqqIHRNAPiCPlCKaKs 273 (286)
T KOG4451|consen 252 CLSCHQQIHRNAPICPLCKAKS 273 (286)
T ss_pred HHHHHHHHhcCCCCCcchhhcc
Confidence 4567667667778999998754
No 181
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.32 E-value=40 Score=24.83 Aligned_cols=11 Identities=36% Similarity=1.132 Sum_probs=10.2
Q ss_pred cchhhHHHhhc
Q 042810 201 FHASCISRWLE 211 (230)
Q Consensus 201 FH~~CI~~Wl~ 211 (230)
||+.|+..|++
T Consensus 43 FCRNCLs~Wy~ 53 (104)
T COG3492 43 FCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 182
>PRK11827 hypothetical protein; Provisional
Probab=20.30 E-value=38 Score=22.88 Aligned_cols=19 Identities=32% Similarity=0.737 Sum_probs=12.0
Q ss_pred HhhccCCcccccccCcccc
Q 042810 208 RWLEEQNSCPMCRRQIQYE 226 (230)
Q Consensus 208 ~Wl~~~~tCP~CR~~i~~~ 226 (230)
+||..---||+|+.++..+
T Consensus 3 ~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 3 HRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred hHHHhheECCCCCCcCeEc
Confidence 4444445688888877543
No 183
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=20.30 E-value=1.7e+02 Score=28.98 Aligned_cols=37 Identities=19% Similarity=0.610 Sum_probs=23.4
Q ss_pred EEeCCCCccch--hhHHH-hhcc----CC--cccccccCccccCCC
Q 042810 193 ITMPCHHIFHA--SCISR-WLEE----QN--SCPMCRRQIQYEDLV 229 (230)
Q Consensus 193 ~~LpC~H~FH~--~CI~~-Wl~~----~~--tCP~CR~~i~~~~l~ 229 (230)
..+||.+..|. .|.+. |+-. +. .||+|.+....++|+
T Consensus 316 m~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~ 361 (636)
T KOG2169|consen 316 MSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLI 361 (636)
T ss_pred eecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchh
Confidence 34566555554 56654 4321 22 599999999888875
No 184
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=20.29 E-value=81 Score=23.17 Aligned_cols=32 Identities=19% Similarity=0.469 Sum_probs=23.0
Q ss_pred CCccccCchhhhhhhhhhccccccCceeEEeC--CCCccchhhHHHh
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQLITMP--CHHIFHASCISRW 209 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~v~~Lp--C~H~FH~~CI~~W 209 (230)
...|.||.... |-.+..-. |...||-.|...+
T Consensus 55 ~~~C~iC~~~~-------------G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKSG-------------GACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCCC-------------ceeEEcCCCCCCcCCCHHHHHHC
Confidence 56899999863 33344443 8889999998764
No 185
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=20.15 E-value=88 Score=32.90 Aligned_cols=52 Identities=17% Similarity=0.464 Sum_probs=34.2
Q ss_pred CCccccCchhhhhhhhhhccccccCce-eEEeCCCCccchhhHHH-hhccCCcccccccCcc
Q 042810 165 GDNCAVCLEELIAKEEIKGQTTEKKTQ-LITMPCHHIFHASCISR-WLEEQNSCPMCRRQIQ 224 (230)
Q Consensus 165 ~~~C~ICle~~~~~~~~~~~~~~~~~~-v~~LpC~H~FH~~CI~~-Wl~~~~tCP~CR~~i~ 224 (230)
...|-||-+++... ..|+. +..--|+-=-|+.|..- .=+-++.||.|+.+..
T Consensus 17 ~qiCqICGD~vg~~--------~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKT--------VDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcC--------CCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 56899999997552 11443 33334777799999832 1223568999998665
No 186
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=20.13 E-value=51 Score=21.22 Aligned_cols=8 Identities=25% Similarity=0.808 Sum_probs=4.4
Q ss_pred CccccCch
Q 042810 166 DNCAVCLE 173 (230)
Q Consensus 166 ~~C~ICle 173 (230)
..||||-.
T Consensus 32 v~CPiC~~ 39 (54)
T PF05605_consen 32 VVCPICSS 39 (54)
T ss_pred ccCCCchh
Confidence 45666654
Done!