BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042811
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K17|A Chain A, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
pdb|3K17|B Chain B, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
pdb|3K17|C Chain C, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
pdb|3K17|D Chain D, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
Length = 365
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 72 DRPVETTKLGDVRRNGNNWPFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDVV 125
+ PV G+++ +G +W F E + T+ FL+ EGI L + V+
Sbjct: 57 ENPVSWPIGGELKPDGEHWTFTAEAINIATT-------FLKSEGIELTPVKXVI 103
>pdb|2WVX|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
Length = 744
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 36 YEFGKKLAK-KLQVLANLKEEENYEDVADRLS-------EDSVDDRPVETTKLGDVRRNG 87
Y K+L + K ++ K NY+++ D+ S ED P K GD G
Sbjct: 456 YRLAKELKRPKKEISLFAKRAXNYKNLFDKESKLXRGRNEDGTFQSPFSPLKWGDAFTEG 515
Query: 88 NNWPF 92
N+W +
Sbjct: 516 NSWHY 520
>pdb|2WVX|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVX|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVX|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
Length = 744
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 36 YEFGKKLAK-KLQVLANLKEEENYEDVADRLS-------EDSVDDRPVETTKLGDVRRNG 87
Y K+L + K ++ K NY+++ D+ S ED P K GD G
Sbjct: 456 YRLAKELKRPKKEISLFAKRAXNYKNLFDKESKLXRGRNEDGTFQSPFSPLKWGDAFTEG 515
Query: 88 NNWPF 92
N+W +
Sbjct: 516 NSWHY 520
>pdb|1CII|A Chain A, Colicin Ia
Length = 602
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 39 GKKLAKKLQ-VLANLKEEENYEDVADRLSEDSVDDRP-----VETTKLGDVRRNGNNWPF 92
G+ KK++ V LK E Y AD + + DR +E+ KL D+ N N +
Sbjct: 458 GQAKGKKIRNVEEALKTYEKYR--ADINKKINAKDRAAIAAALESVKLSDISSNLNRFSR 515
Query: 93 GVEGVGKITSLSKSYPEF 110
G+ GK TSL+ EF
Sbjct: 516 GLGYAGKFTSLADWITEF 533
>pdb|2WZS|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|E Chain E, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|F Chain F, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|G Chain G, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|H Chain H, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
Length = 738
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 40 KKLAKKLQVLANLKEEENYEDVADRLS-------EDSVDDRPVETTKLGDVRRNGNNW 90
K+ K++ + A K NY+++ D+ S ED P K GD GN+W
Sbjct: 463 KRPKKEISLFA--KRAMNYKNLFDKESKLMRGRNEDGTFQSPFSPLKWGDAFTEGNSW 518
>pdb|2WVZ|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVZ|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVZ|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVZ|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|E Chain E, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|F Chain F, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|G Chain G, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|H Chain H, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW1|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW1|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW1|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW1|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|E Chain E, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|F Chain F, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
Length = 744
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 40 KKLAKKLQVLANLKEEENYEDVADRLS-------EDSVDDRPVETTKLGDVRRNGNNW 90
K+ K++ + A K NY+++ D+ S ED P K GD GN+W
Sbjct: 463 KRPKKEISLFA--KRAMNYKNLFDKESKLMRGRNEDGTFQSPFSPLKWGDAFTEGNSW 518
>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 91 PFGVEGVGKITSLSKSYPEFLEDEGIFLIKMHDV 124
PFG+E +I + + YP+ E G F+ K+ +
Sbjct: 282 PFGIELSEEIKNARRLYPDVHETSGFFIAKIRKL 315
>pdb|3URG|A Chain A, The Crystal Structure Of Anabaena Ccbp
Length = 146
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 2 NRLHKIQMGLTRVQALETEVDNLGGYYFMNCKSSYEFGKKLAKK-----------LQVLA 50
R H+I+ + V A + E +G YY+++ + F K KK ++VL
Sbjct: 29 TREHRIETEII-VDAEDKEERAMGWYYYLDDTLEFPFMGKWKKKSRKTSTIEEKTVEVLG 87
Query: 51 NLKEEENYEDVADRLSEDSVDDRPVETTKLGDV 83
++E +D+ +++ D V T KL D+
Sbjct: 88 MAPDDECLKDMYVEVADIGGKDDDVYTAKLSDI 120
>pdb|1R42|A Chain A, Native Human Angiotensin Converting Enzyme-related
Carboxypeptidase (ace2)
pdb|1R4L|A Chain A, Inhibitor Bound Human Angiotensin Converting
Enzyme-Related Carboxypeptidase (Ace2)
Length = 615
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 85 RNGNNWPFGVEGVGKITSLSKSYPEFLEDEGIF 117
RNG N F E VG+I SLS + P+ L+ G+
Sbjct: 393 RNGANEGFH-EAVGEIMSLSAATPKHLKSIGLL 424
>pdb|2AJF|A Chain A, Structure Of Sars Coronavirus Spike Receptor-Binding
Domain Complexed With Its Receptor
pdb|2AJF|B Chain B, Structure Of Sars Coronavirus Spike Receptor-Binding
Domain Complexed With Its Receptor
pdb|3KBH|A Chain A, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
pdb|3KBH|B Chain B, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
pdb|3KBH|C Chain C, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
pdb|3KBH|D Chain D, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
Length = 597
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 85 RNGNNWPFGVEGVGKITSLSKSYPEFLEDEGIF 117
RNG N F E VG+I SLS + P+ L+ G+
Sbjct: 375 RNGANEGFH-EAVGEIMSLSAATPKHLKSIGLL 406
>pdb|3SCI|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Human Strain Complexed
With Human Receptor Ace2
pdb|3SCI|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Human Strain Complexed
With Human Receptor Ace2
pdb|3SCJ|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human Receptor Ace2
pdb|3SCJ|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human Receptor Ace2
Length = 603
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 85 RNGNNWPFGVEGVGKITSLSKSYPEFLEDEGIF 117
RNG N F E VG+I SLS + P+ L+ G+
Sbjct: 375 RNGANEGFH-EAVGEIMSLSAATPKHLKSIGLL 406
>pdb|3D0G|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Human Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0G|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Human Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0H|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0H|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0I|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2005-2006 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0I|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2005-2006 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
Length = 597
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 85 RNGNNWPFGVEGVGKITSLSKSYPEFLEDEGIF 117
RNG N F E VG+I SLS + P+ L+ G+
Sbjct: 375 RNGANEGFH-EAVGEIMSLSAATPKHLKSIGLL 406
>pdb|3SCK|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human-Civet Chimeric Receptor Ace2
pdb|3SCK|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human-Civet Chimeric Receptor Ace2
pdb|3SCL|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From Sars Coronavirus Epidemic Strain Complexed With
Human-Civet Chimeric Receptor Ace2
pdb|3SCL|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From Sars Coronavirus Epidemic Strain Complexed With
Human-Civet Chimeric Receptor Ace2
Length = 603
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 85 RNGNNWPFGVEGVGKITSLSKSYPEFLEDEGIF 117
RNG N F E VG+I SLS + P+ L+ G+
Sbjct: 375 RNGANEGFH-EAVGEIMSLSAATPKHLKSIGLL 406
>pdb|2P0P|A Chain A, Calcium Binding Protein In The Free Form
pdb|2P0Q|A Chain A, Calcium Binding Protein In The Calcium-Binding Form
pdb|2K2V|A Chain A, Anabaena Ccbp In The Calcium-Bound Form
Length = 126
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 2 NRLHKIQMGLTRVQALETEVDNLGGYYFMNCKSSYEFGKKLAKK-----------LQVLA 50
R H+I+ + V A + E +G YY+++ + F K KK ++VL
Sbjct: 9 TREHRIETEII-VDAEDKEERAMGWYYYLDDTLEFPFMGKWKKKSRKTSTIEEKTVEVLG 67
Query: 51 NLKEEENYEDVADRLSEDSVDDRPVETTKLGDV 83
++E +D+ +++ D V T KL D+
Sbjct: 68 MAPDDECLKDMYVEVADIGGKDDDVYTAKLSDI 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,767,950
Number of Sequences: 62578
Number of extensions: 152459
Number of successful extensions: 299
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 22
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)